Citrus Sinensis ID: 036314

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------
Protein Sequence
EKVLEIEYIKAVAPQKEEEPSLHDDWVSAVDGSNPGFILTGCYDNLGRVWKAGGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWPQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKVLCADWWRGDSVISGGVDSKLCVSSGVSIQ
Secondary Structure (PSIPRED)
ccEEEEEEEEccccccccccccccccEEEEEEccccEEEEEEccccEEEEccccEEEEEEEcccccEEEEEEEEcccccEEEEEEccccccEEEEEccccccccccccccccEEEEcccccEEEEEEcccccEEEEEEccccEEEEccccccccccccEEEEcccccEEEcccccccEEEEcccccccEEEEEcccccEEEEEcccccEEEEEcccccEEEEEcccccEEEEEEccccccEEEEEcccccEEEEccccccccccEEEEccccccEEEEEEccccccEEEEEEccccEEEEEcccccccEEEEcccccEEEEEEccccEEEEEcccccEEEEcccccc
Secondary Structure Prediction (SSPRO)
ccEEEcccccccccccEEEEccccccEEEEEEccccEEEEEccccEEEEEEccccEEEEEccccccEEEEEEcccccccccEEEEEccccEEEEEEcccccEEcccccccEEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEcccccccccccEEEccccccEEEEccccccEEEEEEcccccEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEccccEEEEEEcccccEEEEEEccccEEEEEEccccccccEEEEEEcccccEEEEEEcccccEEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEccccEEEEEccccEEEEEEccccc
Coil and Loop (DISEMBL)
EKVLEIEYIKavapqkeeepslhddwvsavdgsnpgfiltGCYDNLGRVWKAGGVCthileghcgavssvniiksdglKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIaaetsgnmvcsgswdCTISLwrtndsdaagnqvsikkrkgnnqveepqlegEAISTLVGhtqcvssvvwpqqetiysaswdhSVRTWdvemgkdlsdifcgkalncidiggEGSALIaaggsdpilriwdprkpgtsapvfqfsshnswISACKWHNKSWFHLISASYDGKVMLWDLrtawplsvidshkdkvlcadwwrgdsvisggvdsklcvssgvsiq
Flexible Loop (DISEMBL)
EKVLEIEYIkavapqkeeepslhdDWVSAVDGSNPGFILTGCYDNLGRVWKAGGVCTHILEGHCGAVSSVNIIKSDGLKYVTVAtaskdqtlRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAaetsgnmvcsgSWDCTISLWRTNDSDAAgnqvsikkrkgnnqveepQLEGEAISTLVGHTQCVSSVVWPQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKVLCADWWRgdsvisggvdsklcvssgvsiq
Low Complexity Region (SEG)
EKVLEIEYIKAVAPQKEEEPSLHDDWVSAVDGSNPGFILTGCYDNLGRVWKAGGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWPQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKVLCADWWRGDSVISGGVDSKLCVSSGVSIQ
Disordered region (IsUnstruct)
*******YI**************DDWVSAVDGSNPGFILTGCYDNLGRVWKAGGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRT*****************************AISTLVGHTQCVSSVVWPQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKVLCADWWRGDSVISGGVDSKLCV*******
Disordered Region (DISOPRED)
EKVLEIEYIKAVAPQKEEEPSLHDDWVSAVDGSNPGFILTGCYDNLGRVWKAGGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTND*****************QVEEPQLEGEAISTLVGHTQCVSSVVWPQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKVLCADWWRGDSVISGGVDSKLCVSSGVSI*
Disordered Region (DISEMBL)
EKVLEIEYIKAVA**********DDWVSAVDGSNPGFILTGCYDNLGRVWKAGGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWPQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKVLCADWWRGDSVISGGVDSKLCVSSGVSIQ
Disordered Region (DISPRO)
*KVLEIEYIKAVAPQKEEEPSLHDDWVSAVDGSNPGFILTGCYDNLGRVWKAGGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWPQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKVLCADWWRGDSVISGGVDSKLCVSSGV***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
EKVLEIEYIKAVAPQKEEEPSLHDDWVSAVDGSNPGFILTGCYDNLGRVWKAGGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWPQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKVLCADWWRGDSVISGGVDSKLCVSSGVSIQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	347	2.2.26 [Sep-21-2011]
Q6NX08	422	Ribosome biogenesis prote	yes	no	0.922	0.758	0.372	3e-54
Q9JJA4	423	Ribosome biogenesis prote	yes	no	0.922	0.756	0.380	7e-53
P61480	423	Ribosome biogenesis prote	yes	no	0.922	0.756	0.374	3e-52
Q0VC24	423	Ribosome biogenesis prote	yes	no	0.922	0.756	0.374	3e-51
B5DG67	423	Ribosome biogenesis prote	N/A	no	0.951	0.780	0.361	4e-51
Q9GZL7	423	Ribosome biogenesis prote	yes	no	0.922	0.756	0.380	1e-50
Q5REE6	423	Ribosome biogenesis prote	yes	no	0.922	0.756	0.377	2e-50
Q5BJ90	423	Ribosome biogenesis prote	yes	no	0.922	0.756	0.380	5e-49
A8IR43	444	Ribosome biogenesis prote	N/A	no	0.965	0.754	0.347	1e-46
Q17BB0	427	Ribosome biogenesis prote	N/A	no	0.942	0.765	0.318	2e-44

>sp|Q6NX08|WDR12_DANRE Ribosome biogenesis protein wdr12 OS=Danio rerio GN=wdr12 PE=2 SV=1

 Score =  212 bits (540), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 123/330 (37%), Positives = 178/330 (53%), Gaps = 10/330 (3%)

Query: 10  KAVAPQKEEEPSLHDDWVSAVDGSNPGFILTGCYDNLGRVWKAGGVCTHILEGHCGAVSS 69
           K  APQ EE   +HDDW+S+V+ ++  +ILTG YD   R+W   G     + GH   V  
Sbjct: 88  KFTAPQPEE-CIMHDDWISSVE-ADSEWILTGSYDKTARIWSMEGKAVMTVAGHADVVKD 145

Query: 70  VNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAET 129
           V  +K DGL  V + TAS DQT+ LW++++E       K+++    RGH  SV +IA + 
Sbjct: 146 VAWVKRDGLNSVLL-TASLDQTVMLWEWNSER-----NKVKARHCCRGHAGSVDTIAVDP 199

Query: 130 SGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCV 189
           +    CSGSWD  + +W    ++         + +   + E+  L    + TL GH + V
Sbjct: 200 TRTKFCSGSWDKMLKIWSAVPTEEEDEIEEPNRPRKKQKTEQMGLTRTPLMTLSGHNEAV 259

Query: 190 SSVVWPQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEGSALIAAGGSDP 249
           SSV+W   + + SASWDH++R WD E G   S +   K  NCI        L A+G +D 
Sbjct: 260 SSVLWMDADELCSASWDHTIRLWDAETGGQKSTLSGSKVFNCISYSPLCRRL-ASGSTDR 318

Query: 250 ILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRT-AWPL 308
            +R+WDPR    S  +   +SHN W++A +W       L+S S D  V LWD R+   PL
Sbjct: 319 HVRLWDPRSKDGSLVLLSLTSHNGWVTAVRWAPSHEHQLVSGSLDNVVKLWDTRSCKAPL 378

Query: 309 SVIDSHKDKVLCADWWRGDSVISGGVDSKL 338
             + +H+DKVLCADW     ++SGG D+KL
Sbjct: 379 YDLAAHEDKVLCADWTENGLILSGGADNKL 408

Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.
Danio rerio (taxid: 7955)

>sp|Q9JJA4|WDR12_MOUSE Ribosome biogenesis protein WDR12 OS=Mus musculus GN=Wdr12 PE=2 SV=1

 Score =  207 bits (528), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 126/331 (38%), Positives = 176/331 (53%), Gaps = 11/331 (3%)

Query: 10  KAVAPQKEEEPSLHDDWVSAVDGSNPGFILTGCYDNLGRVWKAGGVCTHILEGHCGAVSS 69
           K  APQ E+    HDDW+S+++G+   +IL+G YD   R+W   G     + GH   V  
Sbjct: 88  KYTAPQPEQ-CMFHDDWISSIEGAEE-WILSGSYDKTSRIWSLEGKSIMTIVGHTDVVKD 145

Query: 70  VNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAET 129
           V  +K D L  + + TAS DQT+ LW+++ E+      K+++    RGH  SV +IA ++
Sbjct: 146 VAWVKKDSLSCL-LLTASMDQTVLLWEWNVEK-----NKVKALHCCRGHAGSVDAIAVDS 199

Query: 130 SGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQ-VEEPQLEGEAISTLVGHTQC 188
           SG   CSGSWD  + +W T  +D          R    Q  E+  L    + TL GHT+ 
Sbjct: 200 SGAKFCSGSWDKMLKIWSTVPTDEEDEMEEATNRPRKKQKTEQLGLTRTPLVTLSGHTEA 259

Query: 189 VSSVVWPQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEGSALIAAGGSD 248
           +SSV+W   E I SASWDH++R WDVE G   S +   K  NCI        L A+G +D
Sbjct: 260 ISSVLWSDAEEICSASWDHTIRVWDVESGGLKSTLTGNKVFNCISYSPLCKRL-ASGSTD 318

Query: 249 PILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRT-AWP 307
             +R+WDPR    S      +SH  W+++ KW       LIS S D  V LWD R+   P
Sbjct: 319 RHIRLWDPRTKDGSLVSLSLTSHTGWVTSVKWSPTHEQQLISGSLDNIVKLWDTRSCKAP 378

Query: 308 LSVIDSHKDKVLCADWWRGDSVISGGVDSKL 338
           L  + +H+DKVL  DW     ++SGG D+KL
Sbjct: 379 LYDLAAHEDKVLSVDWTDTGLLLSGGADNKL 409

Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.

Mus musculus (taxid: 10090)

>sp|P61480|WDR12_RAT Ribosome biogenesis protein WDR12 OS=Rattus norvegicus GN=Wdr12 PE=2 SV=1

 Score =  206 bits (523), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 124/331 (37%), Positives = 176/331 (53%), Gaps = 11/331 (3%)

Query: 10  KAVAPQKEEEPSLHDDWVSAVDGSNPGFILTGCYDNLGRVWKAGGVCTHILEGHCGAVSS 69
           K  APQ E+    HDDW+S++ G+   +IL+G YD   R+W   G     + GH   V  
Sbjct: 88  KYTAPQPEQ-CMFHDDWISSIKGAEE-WILSGSYDKTSRIWSLEGKSIMTIVGHTDVVKD 145

Query: 70  VNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAET 129
           V  +K D L  + + TAS DQT+ LW+++ E       K+++    RGH  SV +IA ++
Sbjct: 146 VAWVKKDSLSCL-LLTASMDQTILLWEWNIER-----NKVKALHCCRGHAGSVDAIAVDS 199

Query: 130 SGNMVCSGSWDCTISLWRTNDSDAAGN-QVSIKKRKGNNQVEEPQLEGEAISTLVGHTQC 188
           SG   CSGSWD  + +W T  +D     Q    + +   + E+  L    + TL GHT+ 
Sbjct: 200 SGTKFCSGSWDKMLKIWSTVPTDEEDEIQEPTNRPRKKQKTEQLGLTRTPLVTLSGHTEA 259

Query: 189 VSSVVWPQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEGSALIAAGGSD 248
           +SSV+W   + + SASWDH+VR WDVE G   S +   K  NCI        L A+G +D
Sbjct: 260 ISSVLWSDADEVCSASWDHTVRVWDVESGGLKSTLTGNKVFNCISYSPLCKRL-ASGSTD 318

Query: 249 PILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRT-AWP 307
             +R+WDPR    S      +SH  W+++ KW       LIS S D  V LWD R+   P
Sbjct: 319 RHIRLWDPRTKDGSLVSLSLTSHTGWVTSVKWSPTHDQQLISGSLDNMVKLWDTRSCKAP 378

Query: 308 LSVIDSHKDKVLCADWWRGDSVISGGVDSKL 338
           L  + +H+DKVL  DW     ++SGG D+KL
Sbjct: 379 LYDLAAHEDKVLSVDWTDTGLLLSGGADNKL 409

Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.

Rattus norvegicus (taxid: 10116)

>sp|Q0VC24|WDR12_BOVIN Ribosome biogenesis protein WDR12 OS=Bos taurus GN=WDR12 PE=2 SV=1

 Score =  202 bits (514), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 124/331 (37%), Positives = 175/331 (52%), Gaps = 11/331 (3%)

Query: 10  KAVAPQKEEEPSLHDDWVSAVDGSNPGFILTGCYDNLGRVWKAGGVCTHILEGHCGAVSS 69
           K  APQ E+    HDDW+SA++G+   +ILTG YD   R+W   G     + GH   V  
Sbjct: 88  KYTAPQPEQ-CMFHDDWISAIEGTEE-WILTGSYDKTSRIWSLEGKSIMTIVGHTDVVKD 145

Query: 70  VNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAET 129
           V  +K D      + +AS DQT+ LW+++ E       K+++    RGH  SV SIA ++
Sbjct: 146 VAWVKKDS-LSCLLLSASMDQTILLWEWNVER-----NKVKALHCCRGHAGSVDSIAVDS 199

Query: 130 SGNMVCSGSWDCTISLWRTNDSDAAGN-QVSIKKRKGNNQVEEPQLEGEAISTLVGHTQC 188
           +G   CSGSWD  + +W T  +D     + S  + +   + E+  L    I TL GH + 
Sbjct: 200 TGTKFCSGSWDKMLKIWSTVPTDEEDEMEESTNRPRKKQKTEQLGLTRTPIVTLSGHKEA 259

Query: 189 VSSVVWPQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEGSALIAAGGSD 248
           +SSV+W   E I SASWDH+++ WDVE G   S +   K  NCI        L A+G +D
Sbjct: 260 ISSVLWSDAEEICSASWDHTIKVWDVESGSLKSTLTGNKVFNCISYSPLCKRL-ASGSTD 318

Query: 249 PILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRT-AWP 307
             +R+WDPR    S      +SH  W+++ KW       LIS S D  V LWD R+   P
Sbjct: 319 RHIRLWDPRTKDGSLVSLSLTSHTGWVTSVKWSPTHEQQLISGSLDNMVKLWDTRSCKAP 378

Query: 308 LSVIDSHKDKVLCADWWRGDSVISGGVDSKL 338
           L  + +H+DKVL  DW     ++SGG D+KL
Sbjct: 379 LYDLAAHEDKVLSVDWTDSGLLLSGGADNKL 409

Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.

Bos taurus (taxid: 9913)

>sp|B5DG67|WDR12_SALSA Ribosome biogenesis protein wdr12 OS=Salmo salar GN=wdr12 PE=2 SV=1

 Score =  202 bits (513), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 123/340 (36%), Positives = 180/340 (52%), Gaps = 10/340 (2%)

Query: 1   EKVLEIEYIKAVAPQKEEEPSLHDDWVSAVDGSNPGFILTGCYDNLGRVWKAGGVCTHIL 60
           E V+EIEY++     + EE  +HDDW+S+V+ ++  +ILTG YD   ++W   G     +
Sbjct: 78  EDVVEIEYVERFTAPQPEECMMHDDWISSVE-ADSEWILTGSYDKTAKIWSLEGKAVMTV 136

Query: 61  EGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKA 120
            GH   V  V  +K DG     + TAS DQT+ LW++++E       K+++    RGH  
Sbjct: 137 AGHTDVVKDVAWVKRDG-LTSLLLTASLDQTILLWEWNSER-----NKLKARHCCRGHAG 190

Query: 121 SVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQ-VEEPQLEGEAI 179
           SV +IA + +    CSGSWD  + +W    ++    +     R    Q  E+  L    +
Sbjct: 191 SVDTIATDPTRTKFCSGSWDKMLKIWSAVATEEEEEEEEPPSRPRKKQKTEQLGLTRTPL 250

Query: 180 STLVGHTQCVSSVVWPQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEGS 239
            TL GH + VSSV+W   E I SASWDH++R WD E G   + +   K  N I       
Sbjct: 251 MTLSGHNEAVSSVLWLDSEEICSASWDHTIRLWDAETGSVKTSLTGSKVFNHISYSPLCR 310

Query: 240 ALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVML 299
            L A+G +D  +R+WDPR    S  +   +SH+ W++A KW       L+S S D  V L
Sbjct: 311 RL-ASGSTDRHVRLWDPRSKDGSLVLLSLTSHSGWVTAVKWAPSHEHQLVSGSLDNLVKL 369

Query: 300 WDLRT-AWPLSVIDSHKDKVLCADWWRGDSVISGGVDSKL 338
           WD R+   PL  + +H+DKVLC DW     ++SGG D+KL
Sbjct: 370 WDTRSCKAPLYDVSAHEDKVLCVDWTDSRLMLSGGADNKL 409

Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.

Salmo salar (taxid: 8030)

>sp|Q9GZL7|WDR12_HUMAN Ribosome biogenesis protein WDR12 OS=Homo sapiens GN=WDR12 PE=1 SV=2

 Score =  201 bits (510), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 126/331 (38%), Positives = 173/331 (52%), Gaps = 11/331 (3%)

Query: 10  KAVAPQKEEEPSLHDDWVSAVDGSNPGFILTGCYDNLGRVWKAGGVCTHILEGHCGAVSS 69
           K  APQ E+    HDDW+S++ G+   +ILTG YD   R+W   G     + GH   V  
Sbjct: 88  KYTAPQPEQ-CMFHDDWISSIKGAEE-WILTGSYDKTSRIWSLEGKSIMTIVGHTDVVKD 145

Query: 70  VNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAET 129
           V  +K D      + +AS DQT+ LW+++ E       K+++    RGH  SV SIA + 
Sbjct: 146 VAWVKKDS-LSCLLLSASMDQTILLWEWNVER-----NKVKALHCCRGHAGSVDSIAVDG 199

Query: 130 SGNMVCSGSWDCTISLWRTNDSDAAGN-QVSIKKRKGNNQVEEPQLEGEAISTLVGHTQC 188
           SG   CSGSWD  + +W T  +D     + S  + +   + E+  L    I TL GH + 
Sbjct: 200 SGTKFCSGSWDKMLKIWSTVPTDEEDEMEESTNRPRKKQKTEQLGLTRTPIVTLSGHMEA 259

Query: 189 VSSVVWPQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEGSALIAAGGSD 248
           VSSV+W   E I SASWDH++R WDVE G   S +   K  NCI        L A+G +D
Sbjct: 260 VSSVLWSDAEEICSASWDHTIRVWDVESGSLKSTLTGNKVFNCISYSPLCKRL-ASGSTD 318

Query: 249 PILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRT-AWP 307
             +R+WDPR    S      +SH  W+++ KW       LIS S D  V LWD R+   P
Sbjct: 319 RHIRLWDPRTKDGSLVSLSLTSHTGWVTSVKWSPTHEQQLISGSLDNIVKLWDTRSCKAP 378

Query: 308 LSVIDSHKDKVLCADWWRGDSVISGGVDSKL 338
           L  + +H+DKVL  DW     ++SGG D+KL
Sbjct: 379 LYDLAAHEDKVLSVDWTDTGLLLSGGADNKL 409

Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.

Homo sapiens (taxid: 9606)

>sp|Q5REE6|WDR12_PONAB Ribosome biogenesis protein WDR12 OS=Pongo abelii GN=WDR12 PE=2 SV=1

 Score =  200 bits (508), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 125/331 (37%), Positives = 173/331 (52%), Gaps = 11/331 (3%)

Query: 10  KAVAPQKEEEPSLHDDWVSAVDGSNPGFILTGCYDNLGRVWKAGGVCTHILEGHCGAVSS 69
           K  APQ E+    HDDW+S++ G+   +ILTG YD   R+W   G     + GH   V  
Sbjct: 88  KYTAPQPEQ-CMFHDDWISSIKGAEE-WILTGSYDKTSRIWSLEGKSIMTIVGHTDVVKD 145

Query: 70  VNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAET 129
           V  +K D      + +AS DQT+ LW+++ E       K+++    RGH  SV SIA + 
Sbjct: 146 VAWVKKDS-LSCLLLSASMDQTILLWEWNVER-----NKVKALHCCRGHAGSVDSIAVDG 199

Query: 130 SGNMVCSGSWDCTISLWRTNDSDAAGN-QVSIKKRKGNNQVEEPQLEGEAISTLVGHTQC 188
           SG   CSGSWD  + +W T  +D     + S  + +   + E+  L    + TL GH + 
Sbjct: 200 SGTKFCSGSWDKMLKIWSTVPTDEEDEMEESTNRPRKKQKTEQLGLTRTPVVTLSGHMEA 259

Query: 189 VSSVVWPQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEGSALIAAGGSD 248
           VSSV+W   E I SASWDH++R WDVE G   S +   K  NCI        L A+G +D
Sbjct: 260 VSSVLWSDAEEICSASWDHTIRVWDVESGSLKSTLTGNKVFNCISYSPLCKRL-ASGSTD 318

Query: 249 PILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRT-AWP 307
             +R+WDPR    S      +SH  W+++ KW       LIS S D  V LWD R+   P
Sbjct: 319 RHIRLWDPRTKDGSLVSLSLTSHTGWVTSVKWSPTHEQQLISGSLDNIVKLWDTRSCKAP 378

Query: 308 LSVIDSHKDKVLCADWWRGDSVISGGVDSKL 338
           L  + +H+DKVL  DW     ++SGG D+KL
Sbjct: 379 LYDLAAHEDKVLSVDWTDTGLLLSGGADNKL 409

Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.

Pongo abelii (taxid: 9601)

>sp|Q5BJ90|WDR12_XENTR Ribosome biogenesis protein wdr12 OS=Xenopus tropicalis GN=wdr12 PE=2 SV=1

 Score =  195 bits (495), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 126/331 (38%), Positives = 173/331 (52%), Gaps = 11/331 (3%)

Query: 10  KAVAPQKEEEPSLHDDWVSAVDGSNPGFILTGCYDNLGRVWKAGGVCTHILEGHCGAVSS 69
           K  APQ  EE  +HDDWVS++ G+   +ILTG YD   R+W   G     + GH  AV  
Sbjct: 88  KITAPQ-PEECMMHDDWVSSIAGTEE-WILTGSYDKTCRIWSLEGKTIMTITGHTEAVKD 145

Query: 70  VNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAET 129
           V  +K D      + +AS DQT++LW+++ E       KI++    RGH  SV SIA + 
Sbjct: 146 VTWVKKDS-LSCLLLSASIDQTIQLWEWNTER-----NKIKALHCCRGHAGSVDSIAVDA 199

Query: 130 SGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQ-VEEPQLEGEAISTLVGHTQC 188
           S    CSGSWD  + +W    S+          R    Q  E+  L    I TL GH++ 
Sbjct: 200 SRTKFCSGSWDKMLKIWSAVPSEEEDEYEETSDRPRKKQKTEKMGLTRIPIVTLSGHSEA 259

Query: 189 VSSVVWPQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEGSALIAAGGSD 248
           VSSV+W   + I SASWDH+++ WDVE G   S +   K  NCI      S  +A+G +D
Sbjct: 260 VSSVLWSDVDEICSASWDHNIKIWDVETGTVKSTLAGNKVFNCISY-SPLSQRLASGSTD 318

Query: 249 PILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRT-AWP 307
             +R+WDPR    S  +   +SH  W+++ KW       L+S S D  V LWD R+   P
Sbjct: 319 RHIRLWDPRSKDGSLVLCSLTSHTGWVTSVKWSPSHEQQLVSGSLDKLVKLWDTRSCKAP 378

Query: 308 LSVIDSHKDKVLCADWWRGDSVISGGVDSKL 338
           L  + +H DKVL  DW     ++SGG D+KL
Sbjct: 379 LYDLAAHSDKVLSVDWTDAGLILSGGSDNKL 409

Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.

Xenopus tropicalis (taxid: 8364)

>sp|A8IR43|WDR12_CHLRE Ribosome biogenesis protein WDR12 homolog OS=Chlamydomonas reinhardtii GN=CHLREDRAFT_128420 PE=3 SV=2

 Score =  187 bits (475), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 125/360 (34%), Positives = 179/360 (49%), Gaps = 25/360 (6%)

Query: 1   EKVLEIEYIKAVAPQKEEEPSLHDDWVSAVDGSN-----------PGFILTGCYDNLGRV 49
           E  LE+EY+ AV P +++  + HDDWVS+VDGS             G +++G YD L R+
Sbjct: 78  ESTLEVEYVPAVVPPQQKNSTPHDDWVSSVDGSRCAPASSSGGSPSGVVVSGSYDGLLRL 137

Query: 50  WKAGGVCTHILEGHCGAVSSVNII-KSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKK 108
           W         +  H G V+ V  + KS G     + T+ KD+ +++W+  + E  +    
Sbjct: 138 WNGDLEAVASVSAHAGGVNCVRFLPKSQG---DLLLTSGKDRLVKMWQLSSSEEEDAGPS 194

Query: 109 IRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSD--AAGNQVSIKKRKGN 166
            R     RGH+  V ++AA  SG    S  WD  + +W   +    AAG   + KK++  
Sbjct: 195 CRLVATYRGHEDGVEAVAASPSGRRFASCGWDGKLLVWEGGEQLRWAAGTAEASKKKRKT 254

Query: 167 NQVEEPQLEGEAISTLVGHTQCVSSVVWPQQETIYSASWDHSVRTWDVEMGKDLSDIFCG 226
                    G   + L GH  CVSSV WP + +++S  WDHSVR WDV  G         
Sbjct: 255 GTANGSAAAGAGGADLRGHLHCVSSVAWPAENSLFSGGWDHSVRRWDVSSGAAADTYNGS 314

Query: 227 KALNCIDIGGEGSALIAAGGSDPILRIWDPR-KPGTSA-PVFQFSSHNSWISACKWHNKS 284
           KA+ CI       AL+A G SD  LR+WD R K G+ A  V    +H  W++A  W   S
Sbjct: 315 KAVLCIASHAASPALVAFGCSDRALRLWDTRGKAGSDALAVTTQGAHGGWVTAVAWCPSS 374

Query: 285 WFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKVLCADWWRG------DSVISGGVDSKL 338
             H+ SAS+DG + +WD+RT  PL ++  H DKVL   W  G        ++SGG D +L
Sbjct: 375 QHHIASASHDGTIKMWDIRTQIPLGMLSHHTDKVLALGWLGGAEAGHARGLVSGGADCQL 434

Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit.

Chlamydomonas reinhardtii (taxid: 3055)

>sp|Q17BB0|WDR12_AEDAE Ribosome biogenesis protein WDR12 homolog OS=Aedes aegypti GN=AAEL005041 PE=3 SV=1

 Score =  179 bits (455), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 109/342 (31%), Positives = 177/342 (51%), Gaps = 15/342 (4%)

Query: 1   EKVLEIEYIKAVAPQKEEEPSLHDDWVSAVDGSNPGFILTGCYDNLGRVWKAGGVCTHIL 60
           E  +E+EY++     + ++  LHDDWVSAV+  +  +ILTGCYDN   +W   G     +
Sbjct: 88  EDTVELEYVERYPAPEPQDCLLHDDWVSAVEAKD-NWILTGCYDNTLNIWTTKGKHKLTI 146

Query: 61  EGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKA 120
            GH   V  V  I  D  K V  A+AS+DQT+ LW+++ +        +   ++ +GH+ 
Sbjct: 147 PGHIAPVKGVTWISLDEEKGV-FASASQDQTVMLWEWNVK-----ANSVECVQVCKGHER 200

Query: 121 SVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAIS 180
            V  IAA  S   + +GSWD  + +W T+  +   +Q S  KR    Q  + +     + 
Sbjct: 201 GVDCIAANRSKTRMATGSWDTMLKIWSTDVRNDGDSQPSTSKR----QKLDTEKARTPVL 256

Query: 181 TLVGHTQCVSSVVWPQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIG-GEGS 239
           TL GH +C+S V W    T+ ++SWDH+++ WD+ +    S+I CG   +  D+     +
Sbjct: 257 TLAGHRECISGVQWIDDNTLVTSSWDHTIKIWDLALSGIKSEI-CGHK-SFFDLSYSHLN 314

Query: 240 ALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVML 299
            LI A   D  LR++DP+    +     +  H  W+ + +W   + +  +S +YD  V L
Sbjct: 315 GLIIAASPDKNLRLYDPKSNQGTIVKNTYLGHTQWVQSVRWSTTNEYLFVSGAYDNHVKL 374

Query: 300 WDLRTA-WPLSVIDSHKDKVLCADWWRGDSVISGGVDSKLCV 340
           WD R+   P+  +  H+DKVL  DW     ++SGG D+ + V
Sbjct: 375 WDYRSPKAPIFELIGHEDKVLACDWSNPKFILSGGSDNSVRV 416

Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit.

Aedes aegypti (taxid: 7159)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	347
224141499	433	predicted protein [Populus trichocarpa]	0.997	0.799	0.783	1e-161
356512281	427	PREDICTED: ribosome biogenesis protein W	0.997	0.810	0.757	1e-158
225451717	438	PREDICTED: ribosome biogenesis protein W	1.0	0.792	0.765	1e-158
356573379	435	PREDICTED: ribosome biogenesis protein W	0.997	0.795	0.746	1e-155
297811697	433	transducin family protein [Arabidopsis l	0.997	0.799	0.742	1e-155
15242326	433	transducin/WD40 domain-containing protei	0.997	0.799	0.736	1e-155
356495972	435	PREDICTED: ribosome biogenesis protein W	0.997	0.795	0.734	1e-153
356551165	435	PREDICTED: ribosome biogenesis protein W	0.997	0.795	0.731	1e-153
217073462	435	unknown [Medicago truncatula] gi|3885200	0.997	0.795	0.714	1e-153
147784893	427	hypothetical protein VITISV_042345 [Viti	0.976	0.793	0.755	1e-153

>gi|224141499|ref|XP_002324109.1| predicted protein [Populus trichocarpa] gi|222867111|gb|EEF04242.1| predicted protein [Populus trichocarpa]

 Score =  573 bits (1476), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 271/346 (78%), Positives = 309/346 (89%)

Query: 1   EKVLEIEYIKAVAPQKEEEPSLHDDWVSAVDGSNPGFILTGCYDNLGRVWKAGGVCTHIL 60
           EKVLEIEY +AV  QKE+EPSLHDDWVSAVDGS P FILTGCYDNLGRVWKA G CTHIL
Sbjct: 87  EKVLEIEYTRAVVLQKEDEPSLHDDWVSAVDGSCPRFILTGCYDNLGRVWKAAGECTHIL 146

Query: 61  EGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKA 120
           EGH GA++SV+++ S+G   VTVATASKD+TLRLWKFD EE ++ P KIR+FKILRGH A
Sbjct: 147 EGHGGAITSVSVVNSEGTDSVTVATASKDETLRLWKFDTEEHLDQPSKIRAFKILRGHNA 206

Query: 121 SVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAIS 180
            V S+AAE SG+M+CSGSWDCTI+LWRTN+SD   + VSIKKRK  N+  E QLEG A+S
Sbjct: 207 PVQSVAAEASGSMICSGSWDCTINLWRTNESDTESDLVSIKKRKVKNKAGESQLEGGALS 266

Query: 181 TLVGHTQCVSSVVWPQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEGSA 240
           TLVGHTQCVSSV WP+  TIYSASWDHSVR WDVEMGKDLS+IFCGKAL+C+ +GGEGSA
Sbjct: 267 TLVGHTQCVSSVYWPEPNTIYSASWDHSVRRWDVEMGKDLSNIFCGKALHCLHVGGEGSA 326

Query: 241 LIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLW 300
           LIAAGGSDPILR+WDPRKPGTSAP++QFSSHNSWISACKWH++S FHL+SASYDGK+MLW
Sbjct: 327 LIAAGGSDPILRVWDPRKPGTSAPIYQFSSHNSWISACKWHSESLFHLLSASYDGKLMLW 386

Query: 301 DLRTAWPLSVIDSHKDKVLCADWWRGDSVISGGVDSKLCVSSGVSI 346
           DLRTAWPL++IDSH+DKVLCADWW+GDSVISGGVDSKL +SSGVS+
Sbjct: 387 DLRTAWPLAIIDSHEDKVLCADWWKGDSVISGGVDSKLRISSGVSV 432

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356512281|ref|XP_003524849.1| PREDICTED: ribosome biogenesis protein WDR12 homolog [Glycine max]

 Score =  565 bits (1456), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 263/347 (75%), Positives = 307/347 (88%), Gaps = 1/347 (0%)

Query: 1   EKVLEIEYIKAVAPQKEEEPSLHDDWVSAVDGSNPGFILTGCYDNLGRVWKAGGVCTHIL 60
           E++LE+EY +AVAP+KEE+PSLHDDWVSAVDGS+  F LTGCYD LGRVWK  G+CTHIL
Sbjct: 82  ERILEVEYTRAVAPRKEEDPSLHDDWVSAVDGSSSRFFLTGCYDGLGRVWKGAGLCTHIL 141

Query: 61  EGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKA 120
           +GH  AV+SV+II   G + VTVATASKD+TLRLWK + E+ VNHP ++R++KILRGHK+
Sbjct: 142 DGHSDAVTSVSIINPKGAETVTVATASKDRTLRLWKLNTEDPVNHPMRVRAYKILRGHKS 201

Query: 121 SVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAIS 180
           SV S+A +TSG MVCSGSWDCTI+LW+TND +A  +QVS KKRK   QVEE QLEGEA +
Sbjct: 202 SVQSVAVQTSGEMVCSGSWDCTINLWQTNDFNAEDDQVS-KKRKVGGQVEESQLEGEAFT 260

Query: 181 TLVGHTQCVSSVVWPQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEGSA 240
           TLVGHTQCVSSVVWPQ+E IYSASWDHS+R WDVE+GK+L+DIFCGK LNC+DIGGEGSA
Sbjct: 261 TLVGHTQCVSSVVWPQRELIYSASWDHSIRKWDVEIGKNLTDIFCGKVLNCLDIGGEGSA 320

Query: 241 LIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLW 300
           LIAAGGSDP+LRIWDPRKPGTSAPVFQF+SH SW+SACKWH++SWFHL+SASYDGKVMLW
Sbjct: 321 LIAAGGSDPVLRIWDPRKPGTSAPVFQFASHTSWVSACKWHDQSWFHLLSASYDGKVMLW 380

Query: 301 DLRTAWPLSVIDSHKDKVLCADWWRGDSVISGGVDSKLCVSSGVSIQ 347
           DLRTAWPLSVI+SH DKVL ADWW+ DSVISGG DSKLC+SS + +Q
Sbjct: 381 DLRTAWPLSVIESHSDKVLSADWWKSDSVISGGADSKLCISSEIPVQ 427

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225451717|ref|XP_002279575.1| PREDICTED: ribosome biogenesis protein WDR12 homolog [Vitis vinifera] gi|296082215|emb|CBI21220.3| unnamed protein product [Vitis vinifera]

 Score =  563 bits (1450), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 268/350 (76%), Positives = 302/350 (86%), Gaps = 3/350 (0%)

Query: 1   EKVLEIEYIKAVAPQKEEEPSLHDDWVSAVDGSNPGFILTGCYDNLGRVWKAGGVCTHIL 60
           EK+LEIEYIKAVAP+K+EEPSLHDDWVSAVDGSNPGFILTGCYD LGR+WKA G CTHIL
Sbjct: 89  EKILEIEYIKAVAPRKQEEPSLHDDWVSAVDGSNPGFILTGCYDGLGRLWKAAGSCTHIL 148

Query: 61  EGHCGAVSSVNIIKSDGLKYVT---VATASKDQTLRLWKFDAEELVNHPKKIRSFKILRG 117
           EGH  A++SV  I   GL+ V    VATASKD+TLRLWKFDA E  + P KIR+FKIL G
Sbjct: 149 EGHNDAITSVKFIDPKGLESVNNSVVATASKDRTLRLWKFDAGERHDLPLKIRAFKILHG 208

Query: 118 HKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGE 177
           H ASV S+A + +GNMVCSGSWDCTI+LWRT++ D  G+ VS+KKRK NN+ EE Q EGE
Sbjct: 209 HNASVQSVAVQPTGNMVCSGSWDCTINLWRTDEFDVEGDLVSVKKRKVNNEAEESQAEGE 268

Query: 178 AISTLVGHTQCVSSVVWPQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGE 237
           A+ST+VGHTQCVSSV+WPQ ETIYSASWDHSVR WDVE GKD  ++FCGKALNC+D+GGE
Sbjct: 269 AVSTIVGHTQCVSSVIWPQHETIYSASWDHSVRRWDVETGKDSWNLFCGKALNCLDVGGE 328

Query: 238 GSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKV 297
            SALIAAGGSD  LRIWDPRKPGT  PVFQFSSH SWISACKWHNKSWFHL+SASYDGKV
Sbjct: 329 SSALIAAGGSDTTLRIWDPRKPGTLTPVFQFSSHTSWISACKWHNKSWFHLLSASYDGKV 388

Query: 298 MLWDLRTAWPLSVIDSHKDKVLCADWWRGDSVISGGVDSKLCVSSGVSIQ 347
           MLWDLRTAWPL+VIDSH +KVLCADWW+GDSV+SGG DSKLC+SS + +Q
Sbjct: 389 MLWDLRTAWPLAVIDSHNNKVLCADWWKGDSVVSGGADSKLCISSEIPVQ 438

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356573379|ref|XP_003554839.1| PREDICTED: ribosome biogenesis protein WDR12 homolog [Glycine max]

 Score =  554 bits (1428), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 259/347 (74%), Positives = 305/347 (87%), Gaps = 1/347 (0%)

Query: 1   EKVLEIEYIKAVAPQKEEEPSLHDDWVSAVDGSNPGFILTGCYDNLGRVWKAGGVCTHIL 60
           E++LEIEY +AVAP+KEE+PSLHDDWVSAVDGS+  F LTGCYD LGRVWK  G+CTHIL
Sbjct: 90  ERILEIEYTRAVAPRKEEDPSLHDDWVSAVDGSSSRFFLTGCYDGLGRVWKGAGLCTHIL 149

Query: 61  EGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKA 120
           EGH  AV+SV+II   G + +TVATASKD+TLRLWK +AE  VN+P ++R++KI RGHK+
Sbjct: 150 EGHSDAVTSVSIINPKGEETITVATASKDRTLRLWKLNAEGPVNNPMRVRAYKIFRGHKS 209

Query: 121 SVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAIS 180
           SV+ +AA+TSG MVCS SWDCTI+LW+TND +A  + VS KKRK   QVEE QLEGEA +
Sbjct: 210 SVNCVAAQTSGEMVCSASWDCTINLWQTNDFNAEDDLVS-KKRKIGAQVEESQLEGEAFT 268

Query: 181 TLVGHTQCVSSVVWPQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEGSA 240
           TLVGHTQCVS+VVWPQQE+IYSASWDHS+R WDVE GK+L+D+FCGK LNC+DIGGEGSA
Sbjct: 269 TLVGHTQCVSAVVWPQQESIYSASWDHSIRKWDVETGKNLTDLFCGKVLNCLDIGGEGSA 328

Query: 241 LIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLW 300
           LIAAGGSDP++RIWDPRKPGTSAPVFQFSSH SWISACKWH++SWFHL+SASYDGKVMLW
Sbjct: 329 LIAAGGSDPVIRIWDPRKPGTSAPVFQFSSHTSWISACKWHDQSWFHLLSASYDGKVMLW 388

Query: 301 DLRTAWPLSVIDSHKDKVLCADWWRGDSVISGGVDSKLCVSSGVSIQ 347
           DLRTAWPLSVI+SH DKVL ADWW+ +SVISGG DSKLC+SS + ++
Sbjct: 389 DLRTAWPLSVIESHSDKVLSADWWKSNSVISGGADSKLCISSEIPVK 435

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297811697|ref|XP_002873732.1| transducin family protein [Arabidopsis lyrata subsp. lyrata] gi|297319569|gb|EFH49991.1| transducin family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  553 bits (1426), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 257/346 (74%), Positives = 303/346 (87%)

Query: 1   EKVLEIEYIKAVAPQKEEEPSLHDDWVSAVDGSNPGFILTGCYDNLGRVWKAGGVCTHIL 60
           E+ LEIEYI+AV P+KEEEPSLHDDWVSAV+GS+P FILTGCYD LGRVW + G C+HIL
Sbjct: 87  ERTLEIEYIRAVTPRKEEEPSLHDDWVSAVNGSSPRFILTGCYDGLGRVWSSAGSCSHIL 146

Query: 61  EGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKA 120
           EGH GA+SSV ++ S+  + VTVAT+SKD+TLRL+KFD  E V+   K+R++KILRGHKA
Sbjct: 147 EGHSGAISSVALVNSNDAETVTVATSSKDRTLRLFKFDPTESVDSTTKVRAYKILRGHKA 206

Query: 121 SVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAIS 180
           SV S++A+ SGNMVCS SWDCTI+LW TN+S + G  VS+KKRKGNNQ EE Q EGEA++
Sbjct: 207 SVQSVSAQKSGNMVCSSSWDCTINLWNTNESTSEGESVSVKKRKGNNQGEESQSEGEAVT 266

Query: 181 TLVGHTQCVSSVVWPQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEGSA 240
           +LVGHTQCVSSVVWP+ + IYS+SWDHSVR WDVE GKD  ++FCGKALN +D+GGEGSA
Sbjct: 267 SLVGHTQCVSSVVWPEYDVIYSSSWDHSVRRWDVETGKDSLNLFCGKALNTVDVGGEGSA 326

Query: 241 LIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLW 300
           LIAAGGSDPILR+WDPRKPGTSAPVFQFSSH+SWISACKWH  SWFHL+SASYDGK+MLW
Sbjct: 327 LIAAGGSDPILRVWDPRKPGTSAPVFQFSSHSSWISACKWHKSSWFHLLSASYDGKIMLW 386

Query: 301 DLRTAWPLSVIDSHKDKVLCADWWRGDSVISGGVDSKLCVSSGVSI 346
           DLRTAWPLSVID+H DKVL ADWW+G+SVISGG DSKL +SSG++I
Sbjct: 387 DLRTAWPLSVIDTHNDKVLSADWWKGESVISGGADSKLRISSGIAI 432

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15242326|ref|NP_197059.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana] gi|9755810|emb|CAC01754.1| putative protein [Arabidopsis thaliana] gi|17381110|gb|AAL36367.1| unknown protein [Arabidopsis thaliana] gi|20258961|gb|AAM14196.1| unknown protein [Arabidopsis thaliana] gi|332004793|gb|AED92176.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana]

 Score =  552 bits (1423), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 255/346 (73%), Positives = 301/346 (86%)

Query: 1   EKVLEIEYIKAVAPQKEEEPSLHDDWVSAVDGSNPGFILTGCYDNLGRVWKAGGVCTHIL 60
           E+ LEIEYI+AV P+KEEEPSLHDDWVSAV+GS+P FILTGCYD LGRVW + G C+HIL
Sbjct: 87  ERTLEIEYIRAVTPRKEEEPSLHDDWVSAVNGSSPRFILTGCYDGLGRVWSSAGSCSHIL 146

Query: 61  EGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKA 120
           EGH GA+SSV ++ S+  + VTVATASKD+TLRL+KFD  E V+   K+R++KILRGHKA
Sbjct: 147 EGHSGAISSVALVNSNDAETVTVATASKDRTLRLFKFDPAESVDSTTKVRAYKILRGHKA 206

Query: 121 SVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAIS 180
           SV S++A+ SGNMVCS SWDCTI+LW TN+S + G  VS+KKRKGNNQ EE Q EGEA++
Sbjct: 207 SVQSVSAQKSGNMVCSSSWDCTINLWNTNESTSEGESVSVKKRKGNNQAEESQSEGEAVT 266

Query: 181 TLVGHTQCVSSVVWPQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEGSA 240
           +LVGHTQCVSSVVWP+ + IYS+SWDHSVR WDVE GKD  ++FCGKALN +D+GGE SA
Sbjct: 267 SLVGHTQCVSSVVWPEHDVIYSSSWDHSVRRWDVETGKDSLNLFCGKALNTVDVGGESSA 326

Query: 241 LIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLW 300
           LIAAGGSDPILR+WDPRKPGTSAPVFQFSSH+SWISACKWH  SWFHL+SASYDGK+MLW
Sbjct: 327 LIAAGGSDPILRVWDPRKPGTSAPVFQFSSHSSWISACKWHKSSWFHLLSASYDGKIMLW 386

Query: 301 DLRTAWPLSVIDSHKDKVLCADWWRGDSVISGGVDSKLCVSSGVSI 346
           DLRTAWPLSVID+H DKVL ADWW+G+SV+SGG DS L +SSG++I
Sbjct: 387 DLRTAWPLSVIDTHNDKVLSADWWKGESVVSGGADSNLRISSGIAI 432

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356495972|ref|XP_003516844.1| PREDICTED: ribosome biogenesis protein WDR12 homolog [Glycine max]

 Score =  548 bits (1411), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 255/347 (73%), Positives = 303/347 (87%), Gaps = 1/347 (0%)

Query: 1   EKVLEIEYIKAVAPQKEEEPSLHDDWVSAVDGSNPGFILTGCYDNLGRVWKAGGVCTHIL 60
           E++LEIEY +AVAP+KEE+PSLHDDWVSAVDGS+  F LTGCYD LGRVWK  G+CTHIL
Sbjct: 90  ERILEIEYARAVAPRKEEDPSLHDDWVSAVDGSSSRFFLTGCYDGLGRVWKGAGLCTHIL 149

Query: 61  EGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKA 120
           EGH  A++SV+II   G + VTVATASKD+TLRLWK +A + VN+P ++R++KILRGHK+
Sbjct: 150 EGHSDAITSVSIINPKGEETVTVATASKDRTLRLWKLNAGDHVNNPMRVRAYKILRGHKS 209

Query: 121 SVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAIS 180
           SV  +A +T+G MVCS SWDCTI+LW+TND +A  + VS KKRK   QVEE QLEGEA +
Sbjct: 210 SVQCVAVQTAGEMVCSASWDCTINLWQTNDFNAEDDLVS-KKRKIGAQVEESQLEGEAFT 268

Query: 181 TLVGHTQCVSSVVWPQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEGSA 240
           TLVGHTQCVS+VVWPQ+E+IYSASWDHS+R WDVE GK+L+D+FCGK LNC+DIGGEGS 
Sbjct: 269 TLVGHTQCVSAVVWPQRESIYSASWDHSIRKWDVETGKNLTDLFCGKVLNCLDIGGEGST 328

Query: 241 LIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLW 300
           LIAAGGSDP++RIWDPRKPGTSAPVFQFSSH SW+SACKWH++SWFHL+SASYDGKVMLW
Sbjct: 329 LIAAGGSDPVIRIWDPRKPGTSAPVFQFSSHMSWVSACKWHDQSWFHLLSASYDGKVMLW 388

Query: 301 DLRTAWPLSVIDSHKDKVLCADWWRGDSVISGGVDSKLCVSSGVSIQ 347
           DLRTAWPLSVI+SH DKVL ADWW+ +SVISGG DSKLC+SS + +Q
Sbjct: 389 DLRTAWPLSVIESHSDKVLSADWWKSNSVISGGADSKLCISSEIPVQ 435

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356551165|ref|XP_003543948.1| PREDICTED: ribosome biogenesis protein WDR12 homolog [Glycine max]

 Score =  547 bits (1409), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 254/347 (73%), Positives = 303/347 (87%), Gaps = 1/347 (0%)

Query: 1   EKVLEIEYIKAVAPQKEEEPSLHDDWVSAVDGSNPGFILTGCYDNLGRVWKAGGVCTHIL 60
           E++LEIEY +AVAP+KEE+PSLHDDWVSAVDGS+  F LTGCYD LGRVWK  G+CTHIL
Sbjct: 90  ERILEIEYARAVAPRKEEDPSLHDDWVSAVDGSSSRFFLTGCYDGLGRVWKGAGLCTHIL 149

Query: 61  EGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKA 120
           EGH  A++S++II   G + VTVATASKD+TLRLWK +A + VN+P ++R++KILRGHK+
Sbjct: 150 EGHSDAITSISIINPKGEETVTVATASKDRTLRLWKLNAGDHVNNPMRVRAYKILRGHKS 209

Query: 121 SVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAIS 180
           SV  +A +T+G MVCS SWDCTI+LW+TND +A  + VS KKRK   QVEE QLEGEA +
Sbjct: 210 SVQCVAVQTAGEMVCSASWDCTINLWQTNDFNAEDDLVS-KKRKIGAQVEESQLEGEAFT 268

Query: 181 TLVGHTQCVSSVVWPQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEGSA 240
           TLVGHTQCVS+VVWPQ+E+IYSASWDHS+R WDVE GK+L+D+FCGK LNC+DIGGEGS 
Sbjct: 269 TLVGHTQCVSAVVWPQRESIYSASWDHSIRKWDVETGKNLTDLFCGKVLNCLDIGGEGST 328

Query: 241 LIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLW 300
           LIAAGGSDP++RIWDPRKPGTSAPVFQFSSH SW+SACKWH++SWFHL+SASYDGKVMLW
Sbjct: 329 LIAAGGSDPVIRIWDPRKPGTSAPVFQFSSHMSWVSACKWHDQSWFHLLSASYDGKVMLW 388

Query: 301 DLRTAWPLSVIDSHKDKVLCADWWRGDSVISGGVDSKLCVSSGVSIQ 347
           DLRTAWPLSVI+SH DKVL ADWW+ +SVISGG DSKLC+SS + +Q
Sbjct: 389 DLRTAWPLSVIESHSDKVLSADWWKSNSVISGGADSKLCISSEIPVQ 435

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217073462|gb|ACJ85096.1| unknown [Medicago truncatula] gi|388520005|gb|AFK48064.1| unknown [Medicago truncatula]

 Score =  545 bits (1405), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 248/347 (71%), Positives = 304/347 (87%), Gaps = 1/347 (0%)

Query: 1   EKVLEIEYIKAVAPQKEEEPSLHDDWVSAVDGSNPGFILTGCYDNLGRVWKAGGVCTHIL 60
           E++LEIEYI++VAP+KEE+PSLHDDWVSAVDGS+  FILTGCYD  GRVW+  G+CTHIL
Sbjct: 90  ERILEIEYIRSVAPRKEEDPSLHDDWVSAVDGSSSRFILTGCYDGFGRVWEGAGLCTHIL 149

Query: 61  EGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKA 120
           EGH   V+SV++I  +G++ VT+ATASKD+TLRLWK + EE  NHP ++R++KILRGHK+
Sbjct: 150 EGHSDGVTSVSVINPEGVETVTLATASKDRTLRLWKINTEEATNHPARVRAYKILRGHKS 209

Query: 121 SVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAIS 180
           SV S+AA+T+G M+CSGSWDCTI+LW+ ND++A  + VS KKRK + +VE+ QLEGEA +
Sbjct: 210 SVQSVAAQTNGEMICSGSWDCTINLWQINDTNAENDLVS-KKRKVDGRVEDSQLEGEAFT 268

Query: 181 TLVGHTQCVSSVVWPQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEGSA 240
           TLVGHTQCVSSV+WPQ+E+IYSASWDHS+R WDVE GK+++DIFCGKALNC+DIGGE SA
Sbjct: 269 TLVGHTQCVSSVIWPQRESIYSASWDHSIRKWDVEKGKNVTDIFCGKALNCLDIGGESSA 328

Query: 241 LIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLW 300
           LIA GGSDP++RIWDPRKPGTSAPVFQF+SH SW++  KWH+KS FHL+SASYDGKVMLW
Sbjct: 329 LIAVGGSDPVVRIWDPRKPGTSAPVFQFASHTSWVTTVKWHDKSLFHLLSASYDGKVMLW 388

Query: 301 DLRTAWPLSVIDSHKDKVLCADWWRGDSVISGGVDSKLCVSSGVSIQ 347
           DLRTAWPLS I+SH DKV CADWW+ DSVISGG DSKLC+SS + +Q
Sbjct: 389 DLRTAWPLSTIESHSDKVPCADWWKSDSVISGGADSKLCISSQIPLQ 435

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147784893|emb|CAN70824.1| hypothetical protein VITISV_042345 [Vitis vinifera]

 Score =  545 bits (1405), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 262/347 (75%), Positives = 295/347 (85%), Gaps = 8/347 (2%)

Query: 1   EKVLEIEYIKAVAPQKEEEPSLHDDWVSAVDGSNPGFILTGCYDNLGRVWKAGGVCTHIL 60
           EK+LEIEYIKAVAP+K+EEPSLHDDWVSAVDGSNPGFILTGCYD LGR+WKA G CTHIL
Sbjct: 89  EKILEIEYIKAVAPRKQEEPSLHDDWVSAVDGSNPGFILTGCYDGLGRLWKAAGSCTHIL 148

Query: 61  EGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKA 120
           EGH  A++SV  I         VATASKD+TLRLWK  A   +  P KIR+FKIL GH A
Sbjct: 149 EGHNDAITSVKFIDPK-----VVATASKDRTLRLWKGSA---MIFPLKIRAFKILHGHNA 200

Query: 121 SVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAIS 180
           SV S+A + +GNMVCSGSWDCTI+LWRT++ D  G+ VS+KKRK NN+ EE Q EGEA+S
Sbjct: 201 SVQSVAVQPTGNMVCSGSWDCTINLWRTDEFDVEGDLVSVKKRKVNNEAEESQAEGEAVS 260

Query: 181 TLVGHTQCVSSVVWPQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEGSA 240
           T+VGHTQCVSSV+WPQ ETIYSASWDHSVR WDVE GKD  ++FCGKALNC+D+GGE SA
Sbjct: 261 TIVGHTQCVSSVIWPQHETIYSASWDHSVRRWDVETGKDSWNLFCGKALNCLDVGGESSA 320

Query: 241 LIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLW 300
           LIAAGGSD  LRIWDPRKPGT  PVFQFSSH SWISACKWHNKSWFHL+SASYDGKVMLW
Sbjct: 321 LIAAGGSDTTLRIWDPRKPGTLTPVFQFSSHTSWISACKWHNKSWFHLLSASYDGKVMLW 380

Query: 301 DLRTAWPLSVIDSHKDKVLCADWWRGDSVISGGVDSKLCVSSGVSIQ 347
           DLRTAWPL+VIDSH +KVLCADWW+GDSV+SGG DSKLC+SS + +Q
Sbjct: 381 DLRTAWPLAVIDSHNNKVLCADWWKGDSVVSGGADSKLCISSEIPVQ 427

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	347
TAIR|locus:2180952	433	AT5G15550 "AT5G15550" [Arabido	0.997	0.799	0.736	2.7e-148
ZFIN|ZDB-GENE-030131-371	422	wdr12 "WD repeat domain 12" [D	0.948	0.779	0.379	3.1e-60
UNIPROTKB|Q0VC24	423	WDR12 "Ribosome biogenesis pro	0.948	0.777	0.381	2.2e-59
UNIPROTKB|Q9GZL7	423	WDR12 "Ribosome biogenesis pro	0.948	0.777	0.390	5.7e-59
UNIPROTKB|F1SHE8	423	WDR12 "Uncharacterized protein	0.948	0.777	0.381	5.7e-59
UNIPROTKB|F1P2Y8	411	WDR12 "Uncharacterized protein	0.948	0.800	0.375	7.3e-59
UNIPROTKB|Q5REE6	423	WDR12 "Ribosome biogenesis pro	0.948	0.777	0.387	7.3e-59
MGI|MGI:1927241	423	Wdr12 "WD repeat domain 12" [M	0.948	0.777	0.384	7.3e-59
RGD|735072	423	Wdr12 "WD repeat domain 12" [R	0.948	0.777	0.378	2.5e-58
UNIPROTKB|Q5BJ90	423	wdr12 "Ribosome biogenesis pro	0.948	0.777	0.381	3.2e-58

TAIR|locus:2180952 AT5G15550 "AT5G15550" [Arabidopsis thaliana (taxid:3702)]

 Score = 1448 (514.8 bits), Expect = 2.7e-148, P = 2.7e-148
 Identities = 255/346 (73%), Positives = 301/346 (86%)

Query:     1 EKVLEIEYIKAVAPQKEEEPSLHDDWVSAVDGSNPGFILTGCYDNLGRVWKAGGVCTHIL 60
             E+ LEIEYI+AV P+KEEEPSLHDDWVSAV+GS+P FILTGCYD LGRVW + G C+HIL
Sbjct:    87 ERTLEIEYIRAVTPRKEEEPSLHDDWVSAVNGSSPRFILTGCYDGLGRVWSSAGSCSHIL 146

Query:    61 EGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKA 120
             EGH GA+SSV ++ S+  + VTVATASKD+TLRL+KFD  E V+   K+R++KILRGHKA
Sbjct:   147 EGHSGAISSVALVNSNDAETVTVATASKDRTLRLFKFDPAESVDSTTKVRAYKILRGHKA 206

Query:   121 SVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAIS 180
             SV S++A+ SGNMVCS SWDCTI+LW TN+S + G  VS+KKRKGNNQ EE Q EGEA++
Sbjct:   207 SVQSVSAQKSGNMVCSSSWDCTINLWNTNESTSEGESVSVKKRKGNNQAEESQSEGEAVT 266

Query:   181 TLVGHTQCVSSVVWPQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEGSA 240
             +LVGHTQCVSSVVWP+ + IYS+SWDHSVR WDVE GKD  ++FCGKALN +D+GGE SA
Sbjct:   267 SLVGHTQCVSSVVWPEHDVIYSSSWDHSVRRWDVETGKDSLNLFCGKALNTVDVGGESSA 326

Query:   241 LIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLW 300
             LIAAGGSDPILR+WDPRKPGTSAPVFQFSSH+SWISACKWH  SWFHL+SASYDGK+MLW
Sbjct:   327 LIAAGGSDPILRVWDPRKPGTSAPVFQFSSHSSWISACKWHKSSWFHLLSASYDGKIMLW 386

Query:   301 DLRTAWPLSVIDSHKDKVLCADWWRGDSVISGGVDSKLCVSSGVSI 346
             DLRTAWPLSVID+H DKVL ADWW+G+SV+SGG DS L +SSG++I
Sbjct:   387 DLRTAWPLSVIDTHNDKVLSADWWKGESVVSGGADSNLRISSGIAI 432

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0008150 "biological_process" evidence=ND

GO:0005730 "nucleolus" evidence=IDA

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

GO:0005829 "cytosol" evidence=RCA

GO:0009506 "plasmodesma" evidence=IDA

GO:0000478 "endonucleolytic cleavage involved in rRNA processing" evidence=RCA

GO:0001510 "RNA methylation" evidence=RCA

GO:0006606 "protein import into nucleus" evidence=RCA

GO:0006626 "protein targeting to mitochondrion" evidence=RCA

GO:0051604 "protein maturation" evidence=RCA

ZFIN|ZDB-GENE-030131-371 wdr12 "WD repeat domain 12" [Danio rerio (taxid:7955)]

 Score = 617 (222.3 bits), Expect = 3.1e-60, P = 3.1e-60
 Identities = 129/340 (37%), Positives = 186/340 (54%)

Query:     1 EKVLEIEYI-KAVAPQKEEEPSLHDDWVSAVDGSNPGFILTGCYDNLGRVWKAGGVCTHI 59
             E+V+EIEY+ K  APQ EE   +HDDW+S+V+  +  +ILTG YD   R+W   G     
Sbjct:    78 EEVVEIEYVEKFTAPQPEE-CIMHDDWISSVEADSE-WILTGSYDKTARIWSMEGKAVMT 135

Query:    60 LEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHK 119
             + GH   V  V  +K DGL  V + TAS DQT+ LW++++E       K+++    RGH 
Sbjct:   136 VAGHADVVKDVAWVKRDGLNSVLL-TASLDQTVMLWEWNSER-----NKVKARHCCRGHA 189

Query:   120 ASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAI 179
              SV +IA + +    CSGSWD  + +W    ++         + +   + E+  L    +
Sbjct:   190 GSVDTIAVDPTRTKFCSGSWDKMLKIWSAVPTEEEDEIEEPNRPRKKQKTEQMGLTRTPL 249

Query:   180 STLVGHTQCVSSVVWPQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEGS 239
              TL GH + VSSV+W   + + SASWDH++R WD E G   S +   K  NCI       
Sbjct:   250 MTLSGHNEAVSSVLWMDADELCSASWDHTIRLWDAETGGQKSTLSGSKVFNCISYSPLCR 309

Query:   240 ALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVML 299
              L A+G +D  +R+WDPR    S  +   +SHN W++A +W       L+S S D  V L
Sbjct:   310 RL-ASGSTDRHVRLWDPRSKDGSLVLLSLTSHNGWVTAVRWAPSHEHQLVSGSLDNVVKL 368

Query:   300 WDLRTAW-PLSVIDSHKDKVLCADWWRGDSVISGGVDSKL 338
             WD R+   PL  + +H+DKVLCADW     ++SGG D+KL
Sbjct:   369 WDTRSCKAPLYDLAAHEDKVLCADWTENGLILSGGADNKL 408

GO:0000463 "maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=ISS

GO:0000466 "maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=ISS

GO:0005654 "nucleoplasm" evidence=ISS

GO:0005730 "nucleolus" evidence=ISS

GO:0008283 "cell proliferation" evidence=ISS

GO:0030687 "preribosome, large subunit precursor" evidence=ISS

GO:0070545 "PeBoW complex" evidence=ISS

GO:0006364 "rRNA processing" evidence=IEA

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|Q0VC24 WDR12 "Ribosome biogenesis protein WDR12" [Bos taurus (taxid:9913)]

 Score = 609 (219.4 bits), Expect = 2.2e-59, P = 2.2e-59
 Identities = 130/341 (38%), Positives = 186/341 (54%)

Query:     1 EKVLEIEYI-KAVAPQKEEEPSLHDDWVSAVDGSNPGFILTGCYDNLGRVWKAGGVCTHI 59
             E+V+E+EY+ K  APQ E+    HDDW+SA++G+   +ILTG YD   R+W   G     
Sbjct:    78 EEVVELEYVEKYTAPQPEQ-CMFHDDWISAIEGTEE-WILTGSYDKTSRIWSLEGKSIMT 135

Query:    60 LEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHK 119
             + GH   V  V  +K D L  + ++ AS DQT+ LW+++ E       K+++    RGH 
Sbjct:   136 IVGHTDVVKDVAWVKKDSLSCLLLS-ASMDQTILLWEWNVER-----NKVKALHCCRGHA 189

Query:   120 ASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGN-QVSIKKRKGNNQVEEPQLEGEA 178
              SV SIA +++G   CSGSWD  + +W T  +D     + S  + +   + E+  L    
Sbjct:   190 GSVDSIAVDSTGTKFCSGSWDKMLKIWSTVPTDEEDEMEESTNRPRKKQKTEQLGLTRTP 249

Query:   179 ISTLVGHTQCVSSVVWPQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEG 238
             I TL GH + +SSV+W   E I SASWDH+++ WDVE G   S +   K  NCI      
Sbjct:   250 IVTLSGHKEAISSVLWSDAEEICSASWDHTIKVWDVESGSLKSTLTGNKVFNCISYSPLC 309

Query:   239 SALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVM 298
               L A+G +D  +R+WDPR    S      +SH  W+++ KW       LIS S D  V 
Sbjct:   310 KRL-ASGSTDRHIRLWDPRTKDGSLVSLSLTSHTGWVTSVKWSPTHEQQLISGSLDNMVK 368

Query:   299 LWDLRTAW-PLSVIDSHKDKVLCADWWRGDSVISGGVDSKL 338
             LWD R+   PL  + +H+DKVL  DW     ++SGG D+KL
Sbjct:   369 LWDTRSCKAPLYDLAAHEDKVLSVDWTDSGLLLSGGADNKL 409

GO:0000463 "maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=ISS

GO:0030687 "preribosome, large subunit precursor" evidence=ISS

GO:0070545 "PeBoW complex" evidence=ISS

GO:0008283 "cell proliferation" evidence=ISS

GO:0000466 "maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=ISS

GO:0005654 "nucleoplasm" evidence=ISS

GO:0005730 "nucleolus" evidence=ISS

GO:0007219 "Notch signaling pathway" evidence=IEA

UNIPROTKB|Q9GZL7 WDR12 "Ribosome biogenesis protein WDR12" [Homo sapiens (taxid:9606)]

 Score = 605 (218.0 bits), Expect = 5.7e-59, P = 5.7e-59
 Identities = 133/341 (39%), Positives = 184/341 (53%)

Query:     1 EKVLEIEYI-KAVAPQKEEEPSLHDDWVSAVDGSNPGFILTGCYDNLGRVWKAGGVCTHI 59
             E+V+EIEY+ K  APQ E+    HDDW+S++ G+   +ILTG YD   R+W   G     
Sbjct:    78 EEVVEIEYVEKYTAPQPEQ-CMFHDDWISSIKGAEE-WILTGSYDKTSRIWSLEGKSIMT 135

Query:    60 LEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHK 119
             + GH   V  V  +K D L  + ++ AS DQT+ LW+++ E       K+++    RGH 
Sbjct:   136 IVGHTDVVKDVAWVKKDSLSCLLLS-ASMDQTILLWEWNVER-----NKVKALHCCRGHA 189

Query:   120 ASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGN-QVSIKKRKGNNQVEEPQLEGEA 178
              SV SIA + SG   CSGSWD  + +W T  +D     + S  + +   + E+  L    
Sbjct:   190 GSVDSIAVDGSGTKFCSGSWDKMLKIWSTVPTDEEDEMEESTNRPRKKQKTEQLGLTRTP 249

Query:   179 ISTLVGHTQCVSSVVWPQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEG 238
             I TL GH + VSSV+W   E I SASWDH++R WDVE G   S +   K  NCI      
Sbjct:   250 IVTLSGHMEAVSSVLWSDAEEICSASWDHTIRVWDVESGSLKSTLTGNKVFNCISYSPLC 309

Query:   239 SALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVM 298
               L A+G +D  +R+WDPR    S      +SH  W+++ KW       LIS S D  V 
Sbjct:   310 KRL-ASGSTDRHIRLWDPRTKDGSLVSLSLTSHTGWVTSVKWSPTHEQQLISGSLDNIVK 368

Query:   299 LWDLRTAW-PLSVIDSHKDKVLCADWWRGDSVISGGVDSKL 338
             LWD R+   PL  + +H+DKVL  DW     ++SGG D+KL
Sbjct:   369 LWDTRSCKAPLYDLAAHEDKVLSVDWTDTGLLLSGGADNKL 409

GO:0007219 "Notch signaling pathway" evidence=IEA

GO:0005730 "nucleolus" evidence=IDA

GO:0005654 "nucleoplasm" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0000466 "maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP

GO:0042273 "ribosomal large subunit biogenesis" evidence=IC

GO:0008283 "cell proliferation" evidence=IMP

GO:0070545 "PeBoW complex" evidence=IDA

GO:0000463 "maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP

GO:0030687 "preribosome, large subunit precursor" evidence=IDA

UNIPROTKB|F1SHE8 WDR12 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 605 (218.0 bits), Expect = 5.7e-59, P = 5.7e-59
 Identities = 130/341 (38%), Positives = 186/341 (54%)

Query:     1 EKVLEIEYI-KAVAPQKEEEPSLHDDWVSAVDGSNPGFILTGCYDNLGRVWKAGGVCTHI 59
             E+V+E+EY+ K  APQ E+    HDDW+SA++G+   +ILTG YD   R+W + G     
Sbjct:    78 EEVVELEYVEKYTAPQPEQ-CMFHDDWISAIEGAEE-WILTGSYDKTSRIWSSEGKSIMT 135

Query:    60 LEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHK 119
             + GH   V  V  +K D L  + ++ AS DQT+ LW+++ E       K+++    RGH 
Sbjct:   136 IVGHTDVVKDVAWVKKDSLSCLLLS-ASMDQTILLWEWNVER-----NKVKALHCCRGHA 189

Query:   120 ASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGN-QVSIKKRKGNNQVEEPQLEGEA 178
              SV SIA +++G   CSGSWD  + +W T  +D     + S  + +   + E+  L    
Sbjct:   190 GSVDSIAVDSTGTRFCSGSWDKMLKIWSTVPTDEEDEMEESTNRPRKKQKTEQLGLTRTP 249

Query:   179 ISTLVGHTQCVSSVVWPQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEG 238
             I TL GH + +SSV+W   E I SASWDH++  WDVE G   S +   K  NCI      
Sbjct:   250 IVTLSGHKEAISSVLWSDAEEICSASWDHTIGVWDVESGSLKSTLTGNKVFNCISYSPLC 309

Query:   239 SALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVM 298
               L A+G +D  +R+WDPR    S      +SH  W+++ KW       LIS S D  V 
Sbjct:   310 KRL-ASGSTDRHIRLWDPRTKDGSLVSLSLTSHTGWVTSVKWSPTHEQQLISGSLDNIVK 368

Query:   299 LWDLRTAW-PLSVIDSHKDKVLCADWWRGDSVISGGVDSKL 338
             LWD R+   PL  + +H+DKVL  DW     ++SGG D+KL
Sbjct:   369 LWDTRSCKAPLYDLAAHEDKVLSVDWTNTGLLLSGGADNKL 409

GO:0070545 "PeBoW complex" evidence=IEA

GO:0030687 "preribosome, large subunit precursor" evidence=IEA

GO:0008283 "cell proliferation" evidence=IEA

GO:0007219 "Notch signaling pathway" evidence=IEA

GO:0005654 "nucleoplasm" evidence=IEA

GO:0000466 "maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA

GO:0000463 "maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA

UNIPROTKB|F1P2Y8 WDR12 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 604 (217.7 bits), Expect = 7.3e-59, P = 7.3e-59
 Identities = 128/341 (37%), Positives = 183/341 (53%)

Query:     1 EKVLEIEYI-KAVAPQKEEEPSLHDDWVSAVDGSNPGFILTGCYDNLGRVWKAGGVCTHI 59
             E+V+EIEY+ K +APQ EE    HDDW+S+V  +   +ILTGCYD   R+W   G     
Sbjct:    66 EEVVEIEYVEKYMAPQPEE-CIFHDDWISSVQATEE-WILTGCYDQTARIWSLEGKSIMT 123

Query:    60 LEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHK 119
             + GH   V  V  +K D L  + ++ AS DQT+ LW+++ E+      K+++    RGH 
Sbjct:   124 IAGHTEVVKDVAWVKQDSLSCLLIS-ASMDQTILLWEWNVEK-----NKVKALHCCRGHA 177

Query:   120 ASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQ-VEEPQLEGEA 178
              SV S+A + +    CSGSWD  + +W    +D          R    Q  E+  L    
Sbjct:   178 GSVDSVAVDCTRTKFCSGSWDKMLKIWSAVPTDEEDEMEEAANRPRKKQKTEQLGLTRTP 237

Query:   179 ISTLVGHTQCVSSVVWPQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEG 238
             ++TL GHT+ +SSV+W   E I SASWDH+++ WD E G   S +   K  N +      
Sbjct:   238 LATLSGHTEAISSVLWSDAEEICSASWDHTIKLWDAETGGLKSTLTGNKVFNSVSYSPLC 297

Query:   239 SALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVM 298
               L A+G +D  +R+WDPR    S  +   +SH  W+++ KW       LIS S D  V 
Sbjct:   298 RRL-ASGSTDRHIRLWDPRSKDGSLVLLSLTSHTGWVTSVKWSPTHEHQLISGSLDNIVK 356

Query:   299 LWDLRTAW-PLSVIDSHKDKVLCADWWRGDSVISGGVDSKL 338
             LWD R+   PL  + +H+DKVLC DW     ++SGG D+KL
Sbjct:   357 LWDTRSCKAPLYDLAAHEDKVLCVDWTEAGLLLSGGADNKL 397

GO:0000463 "maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA

GO:0000466 "maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA

GO:0005654 "nucleoplasm" evidence=IEA

GO:0007219 "Notch signaling pathway" evidence=IEA

GO:0008283 "cell proliferation" evidence=IEA

GO:0030687 "preribosome, large subunit precursor" evidence=IEA

GO:0070545 "PeBoW complex" evidence=IEA

UNIPROTKB|Q5REE6 WDR12 "Ribosome biogenesis protein WDR12" [Pongo abelii (taxid:9601)]

 Score = 604 (217.7 bits), Expect = 7.3e-59, P = 7.3e-59
 Identities = 132/341 (38%), Positives = 184/341 (53%)

Query:     1 EKVLEIEYI-KAVAPQKEEEPSLHDDWVSAVDGSNPGFILTGCYDNLGRVWKAGGVCTHI 59
             E+V+EIEY+ K  APQ E+    HDDW+S++ G+   +ILTG YD   R+W   G     
Sbjct:    78 EEVVEIEYVEKYTAPQPEQ-CMFHDDWISSIKGAEE-WILTGSYDKTSRIWSLEGKSIMT 135

Query:    60 LEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHK 119
             + GH   V  V  +K D L  + ++ AS DQT+ LW+++ E       K+++    RGH 
Sbjct:   136 IVGHTDVVKDVAWVKKDSLSCLLLS-ASMDQTILLWEWNVER-----NKVKALHCCRGHA 189

Query:   120 ASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGN-QVSIKKRKGNNQVEEPQLEGEA 178
              SV SIA + SG   CSGSWD  + +W T  +D     + S  + +   + E+  L    
Sbjct:   190 GSVDSIAVDGSGTKFCSGSWDKMLKIWSTVPTDEEDEMEESTNRPRKKQKTEQLGLTRTP 249

Query:   179 ISTLVGHTQCVSSVVWPQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEG 238
             + TL GH + VSSV+W   E I SASWDH++R WDVE G   S +   K  NCI      
Sbjct:   250 VVTLSGHMEAVSSVLWSDAEEICSASWDHTIRVWDVESGSLKSTLTGNKVFNCISYSPLC 309

Query:   239 SALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVM 298
               L A+G +D  +R+WDPR    S      +SH  W+++ KW       LIS S D  V 
Sbjct:   310 KRL-ASGSTDRHIRLWDPRTKDGSLVSLSLTSHTGWVTSVKWSPTHEQQLISGSLDNIVK 368

Query:   299 LWDLRTAW-PLSVIDSHKDKVLCADWWRGDSVISGGVDSKL 338
             LWD R+   PL  + +H+DKVL  DW     ++SGG D+KL
Sbjct:   369 LWDTRSCKAPLYDLAAHEDKVLSVDWTDTGLLLSGGADNKL 409

GO:0000463 "maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=ISS

GO:0000466 "maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=ISS

GO:0005654 "nucleoplasm" evidence=ISS

GO:0005730 "nucleolus" evidence=ISS

GO:0008283 "cell proliferation" evidence=ISS

GO:0030687 "preribosome, large subunit precursor" evidence=ISS

GO:0070545 "PeBoW complex" evidence=ISS

MGI|MGI:1927241 Wdr12 "WD repeat domain 12" [Mus musculus (taxid:10090)]

 Score = 604 (217.7 bits), Expect = 7.3e-59, P = 7.3e-59
 Identities = 131/341 (38%), Positives = 185/341 (54%)

Query:     1 EKVLEIEYI-KAVAPQKEEEPSLHDDWVSAVDGSNPGFILTGCYDNLGRVWKAGGVCTHI 59
             E+V+E+EY+ K  APQ E+    HDDW+S+++G+   +IL+G YD   R+W   G     
Sbjct:    78 EEVVELEYVEKYTAPQPEQ-CMFHDDWISSIEGAEE-WILSGSYDKTSRIWSLEGKSIMT 135

Query:    60 LEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHK 119
             + GH   V  V  +K D L  + + TAS DQT+ LW+++ E+      K+++    RGH 
Sbjct:   136 IVGHTDVVKDVAWVKKDSLSCLLL-TASMDQTVLLWEWNVEK-----NKVKALHCCRGHA 189

Query:   120 ASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQ-VEEPQLEGEA 178
              SV +IA ++SG   CSGSWD  + +W T  +D          R    Q  E+  L    
Sbjct:   190 GSVDAIAVDSSGAKFCSGSWDKMLKIWSTVPTDEEDEMEEATNRPRKKQKTEQLGLTRTP 249

Query:   179 ISTLVGHTQCVSSVVWPQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEG 238
             + TL GHT+ +SSV+W   E I SASWDH++R WDVE G   S +   K  NCI      
Sbjct:   250 LVTLSGHTEAISSVLWSDAEEICSASWDHTIRVWDVESGGLKSTLTGNKVFNCISYSPLC 309

Query:   239 SALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVM 298
               L A+G +D  +R+WDPR    S      +SH  W+++ KW       LIS S D  V 
Sbjct:   310 KRL-ASGSTDRHIRLWDPRTKDGSLVSLSLTSHTGWVTSVKWSPTHEQQLISGSLDNIVK 368

Query:   299 LWDLRTAW-PLSVIDSHKDKVLCADWWRGDSVISGGVDSKL 338
             LWD R+   PL  + +H+DKVL  DW     ++SGG D+KL
Sbjct:   369 LWDTRSCKAPLYDLAAHEDKVLSVDWTDTGLLLSGGADNKL 409

GO:0000463 "maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=ISO

GO:0000466 "maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005654 "nucleoplasm" evidence=ISO

GO:0005730 "nucleolus" evidence=ISO

GO:0006364 "rRNA processing" evidence=IEA

GO:0007219 "Notch signaling pathway" evidence=IPI

GO:0008283 "cell proliferation" evidence=ISO

GO:0030687 "preribosome, large subunit precursor" evidence=ISO

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0070545 "PeBoW complex" evidence=ISO

RGD|735072 Wdr12 "WD repeat domain 12" [Rattus norvegicus (taxid:10116)]

 Score = 599 (215.9 bits), Expect = 2.5e-58, P = 2.5e-58
 Identities = 129/341 (37%), Positives = 185/341 (54%)

Query:     1 EKVLEIEYI-KAVAPQKEEEPSLHDDWVSAVDGSNPGFILTGCYDNLGRVWKAGGVCTHI 59
             E+V+E+EY+ K  APQ E+    HDDW+S++ G+   +IL+G YD   R+W   G     
Sbjct:    78 EEVVELEYVEKYTAPQPEQ-CMFHDDWISSIKGAEE-WILSGSYDKTSRIWSLEGKSIMT 135

Query:    60 LEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHK 119
             + GH   V  V  +K D L  + + TAS DQT+ LW+++ E       K+++    RGH 
Sbjct:   136 IVGHTDVVKDVAWVKKDSLSCLLL-TASMDQTILLWEWNIER-----NKVKALHCCRGHA 189

Query:   120 ASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGN-QVSIKKRKGNNQVEEPQLEGEA 178
              SV +IA ++SG   CSGSWD  + +W T  +D     Q    + +   + E+  L    
Sbjct:   190 GSVDAIAVDSSGTKFCSGSWDKMLKIWSTVPTDEEDEIQEPTNRPRKKQKTEQLGLTRTP 249

Query:   179 ISTLVGHTQCVSSVVWPQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEG 238
             + TL GHT+ +SSV+W   + + SASWDH+VR WDVE G   S +   K  NCI      
Sbjct:   250 LVTLSGHTEAISSVLWSDADEVCSASWDHTVRVWDVESGGLKSTLTGNKVFNCISYSPLC 309

Query:   239 SALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVM 298
               L A+G +D  +R+WDPR    S      +SH  W+++ KW       LIS S D  V 
Sbjct:   310 KRL-ASGSTDRHIRLWDPRTKDGSLVSLSLTSHTGWVTSVKWSPTHDQQLISGSLDNMVK 368

Query:   299 LWDLRTAW-PLSVIDSHKDKVLCADWWRGDSVISGGVDSKL 338
             LWD R+   PL  + +H+DKVL  DW     ++SGG D+KL
Sbjct:   369 LWDTRSCKAPLYDLAAHEDKVLSVDWTDTGLLLSGGADNKL 409

GO:0000463 "maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=ISO;ISS

GO:0000466 "maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=ISO;ISS

GO:0005634 "nucleus" evidence=ISO

GO:0005654 "nucleoplasm" evidence=ISO;ISS

GO:0005730 "nucleolus" evidence=ISO;ISS

GO:0007219 "Notch signaling pathway" evidence=IEA;ISO

GO:0008283 "cell proliferation" evidence=ISO;ISS

GO:0030687 "preribosome, large subunit precursor" evidence=ISO;ISS

GO:0070545 "PeBoW complex" evidence=ISO;ISS

UNIPROTKB|Q5BJ90 wdr12 "Ribosome biogenesis protein wdr12" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 598 (215.6 bits), Expect = 3.2e-58, P = 3.2e-58
 Identities = 130/341 (38%), Positives = 185/341 (54%)

Query:     1 EKVLEIEYIKAVAPQKEEEPSLHDDWVSAVDGSNPGFILTGCYDNLGRVWKAGGVCTHIL 60
             E V+EIEY++ +   + EE  +HDDWVS++ G+   +ILTG YD   R+W   G     +
Sbjct:    78 EVVVEIEYVEKITAPQPEECMMHDDWVSSIAGTEE-WILTGSYDKTCRIWSLEGKTIMTI 136

Query:    61 EGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKA 120
              GH  AV  V  +K D L  + ++ AS DQT++LW+++ E       KI++    RGH  
Sbjct:   137 TGHTEAVKDVTWVKKDSLSCLLLS-ASIDQTIQLWEWNTER-----NKIKALHCCRGHAG 190

Query:   121 SVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGN--QVSIKKRKGNNQVEEPQLEGEA 178
             SV SIA + S    CSGSWD  + +W    S+      + S + RK   + E+  L    
Sbjct:   191 SVDSIAVDASRTKFCSGSWDKMLKIWSAVPSEEEDEYEETSDRPRK-KQKTEKMGLTRIP 249

Query:   179 ISTLVGHTQCVSSVVWPQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEG 238
             I TL GH++ VSSV+W   + I SASWDH+++ WDVE G   S +   K  NCI      
Sbjct:   250 IVTLSGHSEAVSSVLWSDVDEICSASWDHNIKIWDVETGTVKSTLAGNKVFNCISYSPLS 309

Query:   239 SALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVM 298
               L A+G +D  +R+WDPR    S  +   +SH  W+++ KW       L+S S D  V 
Sbjct:   310 QRL-ASGSTDRHIRLWDPRSKDGSLVLCSLTSHTGWVTSVKWSPSHEQQLVSGSLDKLVK 368

Query:   299 LWDLRTAW-PLSVIDSHKDKVLCADWWRGDSVISGGVDSKL 338
             LWD R+   PL  + +H DKVL  DW     ++SGG D+KL
Sbjct:   369 LWDTRSCKAPLYDLAAHSDKVLSVDWTDAGLILSGGSDNKL 409

GO:0000463 "maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=ISS

GO:0000466 "maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=ISS

GO:0005654 "nucleoplasm" evidence=ISS

GO:0005730 "nucleolus" evidence=ISS

GO:0008283 "cell proliferation" evidence=ISS

GO:0030687 "preribosome, large subunit precursor" evidence=ISS

GO:0070545 "PeBoW complex" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	fgenesh4_pg.C_LG_XVII000484	hypothetical protein (433 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.86.17.1	hypothetical protein (573 aa)				•	•		•		0.861
	estExt_Genewise1_v1.C_LG_IV0024	SubName- Full=Putative uncharacterized protein; (604 aa)				•	•		•		0.807
	gw1.I.4832.1	hypothetical protein (422 aa)				•	•				0.782
	estExt_fgenesh4_pg.C_LG_XV0629	hypothetical protein (314 aa)				•	•				0.753
	estExt_fgenesh4_pm.C_280108	hypothetical protein (960 aa)			•	•				•	0.722
	fgenesh4_pg.C_LG_X000306	hypothetical protein (187 aa)				•	•				0.646
	fgenesh4_pm.C_LG_V000540	hypothetical protein (491 aa)				•			•		0.639
	grail3.0132003201	hypothetical protein (187 aa)				•	•				0.631
	eugene3.00110946	hypothetical protein (317 aa)				•	•		•		0.626
	fgenesh4_pg.C_LG_XIV000767	hypothetical protein (534 aa)			•	•					0.624

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	347
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	5e-40
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-33
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-33
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-20
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-18
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	4e-18
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-17
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-16
smart00320	40	smart00320, WD40, WD40 repeats	9e-05
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	2e-04
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	2e-04
smart00320	40	smart00320, WD40, WD40 repeats	3e-04
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	4e-04
smart00320	40	smart00320, WD40, WD40 repeats	7e-04
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	8e-04
PTZ00420	568	PTZ00420, PTZ00420, coronin; Provisional	0.001

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  142 bits (359), Expect = 5e-40
 Identities = 83/322 (25%), Positives = 130/322 (40%), Gaps = 50/322 (15%)

Query: 23  HDDWVSAVDGSNPG-FILTGCYDNLGRVWK-AGGVCTHILEGHCGAVSSVNIIKSDGLKY 80
           H   V+ V  S  G  + TG  D   +VW    G     L+GH G V  V          
Sbjct: 8   HTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTY-- 65

Query: 81  VTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWD 140
             +A+ S D+T+RLW  +  E V           L GH + V S+A    G ++ S S D
Sbjct: 66  --LASGSSDKTIRLWDLETGECVR---------TLTGHTSYVSSVAFSPDGRILSSSSRD 114

Query: 141 CTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW-PQQET 199
            TI +W                             G+ ++TL GHT  V+SV + P    
Sbjct: 115 KTIKVWDVET-------------------------GKCLTTLRGHTDWVNSVAFSPDGTF 149

Query: 200 IYSASWDHSVRTWDVEMGKDLSDIFCG--KALNCIDIGGEGSALIAAGGSDPILRIWDPR 257
           + S+S D +++ WD+  GK       G    +N +    +G  L++   SD  +++WD  
Sbjct: 150 VASSSQDGTIKLWDLRTGK-CVATLTGHTGEVNSVAFSPDGEKLLS-SSSDGTIKLWDLS 207

Query: 258 KPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDK 317
              T   +     H + +++  +    +  L S S DG + +WDLRT   +  +  H + 
Sbjct: 208 ---TGKCLGTLRGHENGVNSVAFSPDGYL-LASGSEDGTIRVWDLRTGECVQTLSGHTNS 263

Query: 318 VLCADWW-RGDSVISGGVDSKL 338
           V    W   G  + SG  D  +
Sbjct: 264 VTSLAWSPDGKRLASGSADGTI 285

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  125 bits (316), Expect = 1e-33
 Identities = 78/283 (27%), Positives = 122/283 (43%), Gaps = 47/283 (16%)

Query: 23  HDDWVSAVDGSNPG-FILTGCYDNLGRVWKA-GGVCTHILEGHCGAVSSVNIIKSDGLKY 80
           H   V  V  S  G ++ +G  D   R+W    G C   L GH   VSSV       +  
Sbjct: 50  HTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRI-- 107

Query: 81  VTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWD 140
             ++++S+D+T+++W  +  + +           LRGH   V+S+A    G  V S S D
Sbjct: 108 --LSSSSRDKTIKVWDVETGKCL---------TTLRGHTDWVNSVAFSPDGTFVASSSQD 156

Query: 141 CTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW-PQQET 199
            TI LW                             G+ ++TL GHT  V+SV + P  E 
Sbjct: 157 GTIKLWDLR-------------------------TGKCVATLTGHTGEVNSVAFSPDGEK 191

Query: 200 IYSASWDHSVRTWDVEMGKDLSDIF-CGKALNCIDIGGEGSALIAAGGSDPILRIWDPRK 258
           + S+S D +++ WD+  GK L  +      +N +    +G  L+A+G  D  +R+WD R 
Sbjct: 192 LLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGY-LLASGSEDGTIRVWDLRT 250

Query: 259 PGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWD 301
                 V   S H + +++  W       L S S DG + +WD
Sbjct: 251 G---ECVQTLSGHTNSVTSLAWSPDG-KRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  123 bits (312), Expect = 4e-33
 Identities = 81/288 (28%), Positives = 124/288 (43%), Gaps = 46/288 (15%)

Query: 56  CTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKIL 115
               L+GH G V+ V    S   K +  AT S D T+++W  +  EL          + L
Sbjct: 1   LRRTLKGHTGGVTCVAF--SPDGKLL--ATGSGDGTIKVWDLETGEL---------LRTL 47

Query: 116 RGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLE 175
           +GH   V  +AA   G  + SGS D TI LW                             
Sbjct: 48  KGHTGPVRDVAASADGTYLASGSSDKTIRLWDLET------------------------- 82

Query: 176 GEAISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFC-GKALNCID 233
           GE + TL GHT  VSSV + P    + S+S D +++ WDVE GK L+ +      +N + 
Sbjct: 83  GECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVA 142

Query: 234 IGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASY 293
              +G+  +A+   D  +++WD R   T   V   + H   +++  +       L+S+S 
Sbjct: 143 FSPDGT-FVASSSQDGTIKLWDLR---TGKCVATLTGHTGEVNSVAFSPDG-EKLLSSSS 197

Query: 294 DGKVMLWDLRTAWPLSVIDSHKDKVLCADW-WRGDSVISGGVDSKLCV 340
           DG + LWDL T   L  +  H++ V    +   G  + SG  D  + V
Sbjct: 198 DGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRV 245

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 90.9 bits (224), Expect = 3e-20
 Identities = 88/326 (26%), Positives = 129/326 (39%), Gaps = 49/326 (15%)

Query: 23  HDDWVSAVDGS--NPGFILTGCYDNLGRVWKA-GGVCTHILEGHCGAVSSVNIIKSDGLK 79
           H + V+++  S            D   ++W    G     L GH   VSS+      GL 
Sbjct: 154 HSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGL- 212

Query: 80  YVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSW 139
              +A+ S D T+RLW     +L+           L GH  SV S  +     +  SGS 
Sbjct: 213 --LIASGSSDGTIRLWDLSTGKLLR--------STLSGHSDSVVSSFSPDGSLLA-SGSS 261

Query: 140 DCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW-PQQE 198
           D TI LW    S                           + TL GH+  V SV + P  +
Sbjct: 262 DGTIRLWDLRSS------------------------SSLLRTLSGHSSSVLSVAFSPDGK 297

Query: 199 TIYSASWDHSVRTWDVEMGKDLSDIFC---GKALNCIDIGGEGSALIAAGGSDPILRIWD 255
            + S S D +VR WD+E GK LS +        ++ +    +GS L++ G  D  +R+WD
Sbjct: 298 LLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWD 357

Query: 256 PRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHK 315
            R       +   S+  S        +     + S S DG V LWDL T   L  +D H 
Sbjct: 358 LRTGKPLKTLEGHSNVLSV-----SFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHT 412

Query: 316 DKVLCADWW-RGDSVISGGVDSKLCV 340
            +V   D+   G S+ SG  D+ + +
Sbjct: 413 SRVTSLDFSPDGKSLASGSSDNTIRL 438

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 85.5 bits (210), Expect = 2e-18
 Identities = 84/310 (27%), Positives = 131/310 (42%), Gaps = 46/310 (14%)

Query: 23  HDDWVSAVDGSNPG-FILTGCYDNLGRVW--KAGGVCTHILEG-HCGAVSSVNIIKSDGL 78
           H+D ++++  S  G  +L+G  D   ++W    G      LEG H  +VS + +   DG 
Sbjct: 64  HEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGN 123

Query: 79  KYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGS 138
             +  A++S D T++LW              +  + L GH  SV S+A    G ++ SGS
Sbjct: 124 SILL-ASSSLDGTVKLWDLS--------TPGKLIRTLEGHSESVTSLAFSPDGKLLASGS 174

Query: 139 -WDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWPQQ 197
             D TI LW                             G+ +STL GHT  VSS+ +   
Sbjct: 175 SLDGTIKLWDLR-------------------------TGKPLSTLAGHTDPVSSLAFSPD 209

Query: 198 ETIY--SASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEGSALIAAGGSDPILRIWD 255
             +   S S D ++R WD+  GK L     G + + +       +L+A+G SD  +R+WD
Sbjct: 210 GGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWD 269

Query: 256 PRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRT--AWPLSVIDS 313
            R   +   +   S H+S + +  +       L S S DG V LWDL T        +  
Sbjct: 270 LRSSSS--LLRTLSGHSSSVLSVAFSPDGKL-LASGSSDGTVRLWDLETGKLLSSLTLKG 326

Query: 314 HKDKVLCADW 323
           H+  V    +
Sbjct: 327 HEGPVSSLSF 336

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 84.8 bits (208), Expect = 4e-18
 Identities = 81/329 (24%), Positives = 126/329 (38%), Gaps = 47/329 (14%)

Query: 21  SLHDDWVSAVDGSNPG----FILTGCYDNLGRVWKA--GGVCTHILEGHCGAVSSVNIIK 74
            LHD  VS +  S+P      + +   D   ++W     G     LEGH  +V+S+    
Sbjct: 106 GLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSP 165

Query: 75  SDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGN-M 133
                 +  + +S D T++LW     + +           L GH   V S+A    G  +
Sbjct: 166 DG---KLLASGSSLDGTIKLWDLRTGKPL---------STLAGHTDPVSSLAFSPDGGLL 213

Query: 134 VCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVV 193
           + SGS D TI LW  +                              STL GH+  V S  
Sbjct: 214 IASGSSDGTIRLWDLSTGK------------------------LLRSTLSGHSDSVVSSF 249

Query: 194 WPQQETIYSASWDHSVRTWDVEMGKDLSDIFCG--KALNCIDIGGEGSALIAAGGSDPIL 251
            P    + S S D ++R WD+     L     G   ++  +    +G  L+A+G SD  +
Sbjct: 250 SPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGK-LLASGSSDGTV 308

Query: 252 RIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVI 311
           R+WD    G          H   +S+  +       +   S DG + LWDLRT  PL  +
Sbjct: 309 RLWDLET-GKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTL 367

Query: 312 DSHKDKVLCADWWRGDSVISGGVDSKLCV 340
           + H + +  +    G  V SG  D  + +
Sbjct: 368 EGHSNVLSVSFSPDGRVVSSGSTDGTVRL 396

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 82.1 bits (201), Expect = 3e-17
 Identities = 77/305 (25%), Positives = 121/305 (39%), Gaps = 48/305 (15%)

Query: 21  SLHDDWVSAVD--GSNPGFILTGCYDNLGRVW--KAGGVCTHILEGHCGAVSSVNIIKSD 76
           + H D VS++         I +G  D   R+W    G +    L GH  + S V+    D
Sbjct: 195 AGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGH--SDSVVSSFSPD 252

Query: 77  GLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCS 136
           G     +A+ S D T+RLW   +             + L GH +SV S+A    G ++ S
Sbjct: 253 GS---LLASGSSDGTIRLWDLRSSS--------SLLRTLSGHSSSVLSVAFSPDGKLLAS 301

Query: 137 GSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWPQ 196
           GS D T+ LW                               +  TL GH   VSS+ +  
Sbjct: 302 GSSDGTVRLWDLETGKL-----------------------LSSLTLKGHEGPVSSLSFSP 338

Query: 197 QETIY--SASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEGSALIAAGGSDPILRIW 254
             ++     S D ++R WD+  GK L  +     +  +        ++++G +D  +R+W
Sbjct: 339 DGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFS-PDGRVVSSGSTDGTVRLW 397

Query: 255 DPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSH 314
           D     T + +     H S +++  +       L S S D  + LWDL+T    SV  S 
Sbjct: 398 DLS---TGSLLRNLDGHTSRVTSLDFSPDGK-SLASGSSDNTIRLWDLKT-SLKSVSFSP 452

Query: 315 KDKVL 319
             KVL
Sbjct: 453 DGKVL 457

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 80.1 bits (196), Expect = 1e-16
 Identities = 54/259 (20%), Positives = 95/259 (36%), Gaps = 25/259 (9%)

Query: 85  TASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTIS 144
            +       +                S  +LRGH+ S+ SIA    G ++ SGS D TI 
Sbjct: 31  LSLGSSESGILLLALLSDSLVSLPDLSSLLLRGHEDSITSIAFSPDGELLLSGSSDGTIK 90

Query: 145 LWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWPQQETIYSAS 204
           LW  ++ +     +        +++     +G +I                        S
Sbjct: 91  LWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASS-------------------S 131

Query: 205 WDHSVRTWDVEMGKDLSDIFCG--KALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTS 262
            D +V+ WD+     L     G  +++  +    +G  L +    D  +++WD R   T 
Sbjct: 132 LDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLR---TG 188

Query: 263 APVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRT-AWPLSVIDSHKDKVLCA 321
            P+   + H   +S+  +       + S S DG + LWDL T     S +  H D V+ +
Sbjct: 189 KPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSS 248

Query: 322 DWWRGDSVISGGVDSKLCV 340
               G  + SG  D  + +
Sbjct: 249 FSPDGSLLASGSSDGTIRL 267

Length = 466

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 38.8 bits (91), Expect = 9e-05
 Identities = 9/41 (21%), Positives = 17/41 (41%), Gaps = 1/41 (2%)

Query: 261 TSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWD 301
           +   +     H   +++  +     + L S S DG + LWD
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKY-LASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 38.5 bits (90), Expect = 2e-04
 Identities = 9/38 (23%), Positives = 15/38 (39%), Gaps = 1/38 (2%)

Query: 264 PVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWD 301
            +     H   +++  +       L S S DG V +WD
Sbjct: 3   LLRTLKGHTGPVTSVAFSPDGN-LLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score = 43.2 bits (101), Expect = 2e-04
 Identities = 36/156 (23%), Positives = 71/156 (45%), Gaps = 34/156 (21%)

Query: 83  VATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSG-NMVCSGSWDC 141
           VA+++ +  +++W     +LV   K+         H+  V SI   ++   ++ SGS D 
Sbjct: 548 VASSNFEGVVQVWDVARSQLVTEMKE---------HEKRVWSIDYSSADPTLLASGSDDG 598

Query: 142 TISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAIS--------------------- 180
           ++ LW  N   + G   +IK +     V+ P   G +++                     
Sbjct: 599 SVKLWSINQGVSIG---TIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLC 655

Query: 181 TLVGHTQCVSSVVWPQQETIYSASWDHSVRTWDVEM 216
           T++GH++ VS V +    T+ S+S D++++ WD+ M
Sbjct: 656 TMIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSM 691

Length = 793

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 37.3 bits (87), Expect = 3e-04
 Identities = 16/34 (47%), Positives = 19/34 (55%)

Query: 113 KILRGHKASVHSIAAETSGNMVCSGSWDCTISLW 146
           K L+GH   V S+A    G  + SGS D TI LW
Sbjct: 6   KTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLW 39

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 36.9 bits (86), Expect = 4e-04
 Identities = 14/34 (41%), Positives = 21/34 (61%)

Query: 113 KILRGHKASVHSIAAETSGNMVCSGSWDCTISLW 146
           + L+GH   V S+A    GN++ SGS D T+ +W
Sbjct: 5   RTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 36.5 bits (85), Expect = 7e-04
 Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)

Query: 176 GEAISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWD 213
           GE + TL GHT  V+SV + P  + + S S D +++ WD
Sbjct: 2   GELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 36.2 bits (84), Expect = 8e-04
 Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 1/39 (2%)

Query: 176 GEAISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWD 213
           G+ + TL GHT  V+SV + P    + S S D +VR WD
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional

 Score = 40.7 bits (95), Expect = 0.001
 Identities = 42/164 (25%), Positives = 69/164 (42%), Gaps = 29/164 (17%)

Query: 100 EELVNHPKKIRSFKILRGHKASVHSIAAETS-GNMVCSGSWDCTISLWRTNDSDAAGNQV 158
           E  +  P  I+    L+GH +S+  +        ++ SGS D TI +W    +D      
Sbjct: 59  ENQMRKPPVIK----LKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHND------ 108

Query: 159 SIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW-PQQETIY-SASWDHSVRTWDVEM 216
                +   ++++PQ        L GH + +S + W P    I  S+ +D  V  WD+E 
Sbjct: 109 -----ESVKEIKDPQ------CILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIEN 157

Query: 217 GKDLSDIFCGKALNCI--DIGGEGSALIAAGGSDPILRIWDPRK 258
            K    I   K L+ +  +I G    L++       + I DPRK
Sbjct: 158 EKRAFQINMPKKLSSLKWNIKGN---LLSGTCVGKHMHIIDPRK 198

Length = 568

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	347
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	100.0
KOG0278	334	consensus Serine/threonine kinase receptor-associa	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0275	508	consensus Conserved WD40 repeat-containing protein	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0288	459	consensus WD40 repeat protein TipD [General functi	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0301	745	consensus Phospholipase A2-activating protein (con	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0283	712	consensus WD40 repeat-containing protein [Function	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	100.0
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.98
PTZ00421	493	coronin; Provisional	99.98
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.98
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.98
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.97
KOG0641	350	consensus WD40 repeat protein [General function pr	99.97
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.97
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.97
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.97
KOG0643	327	consensus Translation initiation factor 3, subunit	99.97
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.97
KOG0296	399	consensus Angio-associated migratory cell protein	99.97
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.97
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.97
PTZ00420	568	coronin; Provisional	99.97
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.97
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.97
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.97
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.97
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.97
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.97
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.97
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.97
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.96
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.96
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.96
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.96
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.96
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.96
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.96
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.96
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.96
PTZ00421	493	coronin; Provisional	99.96
KOG0289	506	consensus mRNA splicing factor [General function p	99.96
PTZ00420	568	coronin; Provisional	99.96
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.96
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.96
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.95
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.95
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.95
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.95
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.95
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.95
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.95
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.95
KOG0639	705	consensus Transducin-like enhancer of split protei	99.95
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.94
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.94
KOG0289	506	consensus mRNA splicing factor [General function p	99.94
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.94
KOG0643	327	consensus Translation initiation factor 3, subunit	99.94
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.94
KOG0641	350	consensus WD40 repeat protein [General function pr	99.94
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.94
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.94
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.94
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.94
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.94
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.94
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.93
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.93
KOG0646	476	consensus WD40 repeat protein [General function pr	99.93
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.93
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.93
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.93
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.93
KOG2096	420	consensus WD40 repeat protein [General function pr	99.92
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.92
KOG0267	825	consensus Microtubule severing protein katanin p80	99.92
KOG1274	933	consensus WD40 repeat protein [General function pr	99.92
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.92
KOG1539	910	consensus WD repeat protein [General function pred	99.92
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.92
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.92
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.92
KOG0267	825	consensus Microtubule severing protein katanin p80	99.92
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.91
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.91
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.9
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.9
KOG2048	691	consensus WD40 repeat protein [General function pr	99.9
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.9
KOG2055	514	consensus WD40 repeat protein [General function pr	99.9
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.89
KOG1539	910	consensus WD repeat protein [General function pred	99.89
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.88
KOG4328	498	consensus WD40 protein [Function unknown]	99.88
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.88
KOG0646	476	consensus WD40 repeat protein [General function pr	99.87
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.87
KOG2096	420	consensus WD40 repeat protein [General function pr	99.87
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.87
KOG4328	498	consensus WD40 protein [Function unknown]	99.87
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.87
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.86
COG2319	466	FOG: WD40 repeat [General function prediction only	99.85
KOG0639	705	consensus Transducin-like enhancer of split protei	99.85
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.84
KOG1273	405	consensus WD40 repeat protein [General function pr	99.84
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.84
KOG1274	933	consensus WD40 repeat protein [General function pr	99.84
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.84
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.84
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.83
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.83
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.83
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.83
KOG1188	376	consensus WD40 repeat protein [General function pr	99.82
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.82
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.81
KOG2048	691	consensus WD40 repeat protein [General function pr	99.81
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.81
KOG1334	559	consensus WD40 repeat protein [General function pr	99.81
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.8
COG2319	466	FOG: WD40 repeat [General function prediction only	99.8
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.79
KOG0649	325	consensus WD40 repeat protein [General function pr	99.79
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.78
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.77
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.77
KOG1188	376	consensus WD40 repeat protein [General function pr	99.76
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.75
KOG4227	609	consensus WD40 repeat protein [General function pr	99.75
KOG2055	514	consensus WD40 repeat protein [General function pr	99.75
KOG4227	609	consensus WD40 repeat protein [General function pr	99.75
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.74
KOG1273	405	consensus WD40 repeat protein [General function pr	99.74
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.73
PRK11028	330	6-phosphogluconolactonase; Provisional	99.73
KOG1310	758	consensus WD40 repeat protein [General function pr	99.72
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.7
PRK01742	429	tolB translocation protein TolB; Provisional	99.7
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.69
KOG1963	792	consensus WD40 repeat protein [General function pr	99.68
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.68
KOG0649	325	consensus WD40 repeat protein [General function pr	99.65
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.65
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.65
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.64
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.64
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.63
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.61
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.59
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.58
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.58
PRK01742	429	tolB translocation protein TolB; Provisional	99.57
KOG1334	559	consensus WD40 repeat protein [General function pr	99.56
PRK03629	429	tolB translocation protein TolB; Provisional	99.54
PRK11028	330	6-phosphogluconolactonase; Provisional	99.54
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.51
PRK02889	427	tolB translocation protein TolB; Provisional	99.5
PRK04922	433	tolB translocation protein TolB; Provisional	99.49
KOG1310	758	consensus WD40 repeat protein [General function pr	99.49
KOG1963	792	consensus WD40 repeat protein [General function pr	99.48
PRK05137	435	tolB translocation protein TolB; Provisional	99.47
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.43
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.42
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.42
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.42
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.41
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.38
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.36
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.36
KOG2139	445	consensus WD40 repeat protein [General function pr	99.35
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.35
KOG2321	703	consensus WD40 repeat protein [General function pr	99.34
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.34
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.34
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.33
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.32
PRK03629	429	tolB translocation protein TolB; Provisional	99.31
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.29
PRK04922	433	tolB translocation protein TolB; Provisional	99.26
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.26
PRK02889	427	tolB translocation protein TolB; Provisional	99.25
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.25
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.25
PRK04792	448	tolB translocation protein TolB; Provisional	99.24
PRK00178	430	tolB translocation protein TolB; Provisional	99.24
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.24
KOG2139	445	consensus WD40 repeat protein [General function pr	99.23
PRK05137	435	tolB translocation protein TolB; Provisional	99.23
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.21
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.2
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.14
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.14
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.13
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.12
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.12
KOG2321	703	consensus WD40 repeat protein [General function pr	99.11
KOG4547	541	consensus WD40 repeat-containing protein [General	99.11
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.11
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.11
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.11
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.08
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.08
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.07
PRK01029	428	tolB translocation protein TolB; Provisional	99.04
KOG4714	319	consensus Nucleoporin [Nuclear structure]	99.04
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.01
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	98.96
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.95
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.94
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.94
KOG4547	541	consensus WD40 repeat-containing protein [General	98.94
PRK00178	430	tolB translocation protein TolB; Provisional	98.93
PRK04792	448	tolB translocation protein TolB; Provisional	98.91
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.89
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.88
PRK01029	428	tolB translocation protein TolB; Provisional	98.81
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.78
KOG2315	566	consensus Predicted translation initiation factor	98.73
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.73
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.72
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.69
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.64
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.63
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.62
KOG2695	425	consensus WD40 repeat protein [General function pr	98.57
KOG2695	425	consensus WD40 repeat protein [General function pr	98.55
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.55
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.54
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	98.52
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.48
KOG2314	698	consensus Translation initiation factor 3, subunit	98.47
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.46
PRK04043	419	tolB translocation protein TolB; Provisional	98.45
KOG2315	566	consensus Predicted translation initiation factor	98.44
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.42
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.37
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.37
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.35
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.35
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.34
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.33
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.33
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.33
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.31
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	98.3
COG4946	668	Uncharacterized protein related to the periplasmic	98.28
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.24
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.24
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.22
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.21
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.21
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.19
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.13
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.1
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.07
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.02
PRK04043	419	tolB translocation protein TolB; Provisional	97.99
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	97.97
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	97.97
COG4946	668	Uncharacterized protein related to the periplasmic	97.91
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.9
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	97.85
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	97.82
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	97.8
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.77
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	97.75
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	97.7
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	97.61
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.53
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.45
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	97.39
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	97.38
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.34
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.33
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.31
KOG2314	698	consensus Translation initiation factor 3, subunit	97.26
KOG3621	726	consensus WD40 repeat-containing protein [General	97.25
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	97.21
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.16
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.14
KOG3621	726	consensus WD40 repeat-containing protein [General	97.08
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	97.07
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	96.86
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	96.71
PRK02888	635	nitrous-oxide reductase; Validated	96.61
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	96.54
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	96.5
PRK02888	635	nitrous-oxide reductase; Validated	96.47
KOG2444	238	consensus WD40 repeat protein [General function pr	96.24
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	96.14
KOG2444	238	consensus WD40 repeat protein [General function pr	96.04
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	96.03
KOG2395	644	consensus Protein involved in vacuole import and d	95.88
PHA02713	557	hypothetical protein; Provisional	95.74
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	95.73
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	95.7
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	95.65
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	95.5
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	95.43
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	95.34
PHA02713	557	hypothetical protein; Provisional	95.34
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	95.29
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	94.92
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	94.9
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	94.87
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	94.67
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	94.41
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	94.31
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	93.83
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	93.54
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	93.52
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	93.49
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	92.95
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	92.51
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	92.46
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	92.43
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	92.03
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	91.87
PRK13616	591	lipoprotein LpqB; Provisional	91.81
KOG2395	644	consensus Protein involved in vacuole import and d	91.74
COG3391	381	Uncharacterized conserved protein [Function unknow	91.63
PRK13616	591	lipoprotein LpqB; Provisional	90.83
COG3391	381	Uncharacterized conserved protein [Function unknow	90.78
PHA03098	534	kelch-like protein; Provisional	90.76
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	90.62
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	90.46
KOG2247	615	consensus WD40 repeat-containing protein [General	90.1
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	90.03
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	89.11
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	88.39
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	87.36
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	87.27
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	86.33
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	86.05
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	85.53
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	85.48
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	84.72
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	84.63
PHA02790	480	Kelch-like protein; Provisional	84.31
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	84.31
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	83.3
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	83.2
PHA03098	534	kelch-like protein; Provisional	82.92
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	82.78
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	82.16

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=1.7e-58  Score=385.54  Aligned_cols=337  Identities=41%  Similarity=0.743  Sum_probs=289.8

Q ss_pred             CceEEEEEEeccCCCCcCCCCCcCCceeeccCCCCCEEEEEecCCeEEEEcCCCeEEEEeeccCCceEEEEEeecCCCce
Q 036314            1 EKVLEIEYIKAVAPQKEEEPSLHDDWVSAVDGSNPGFILTGCYDNLGRVWKAGGVCTHILEGHCGAVSSVNIIKSDGLKY   80 (347)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~sg~~d~~i~iw~~~~~~~~~l~~h~~~V~~v~~~~~~~~~~   80 (347)
                      |.+|||+|+....|+++....-|++||.++... ++.|+||++||++|+|+..|++.+++.||.++|.++++.-.+. ..
T Consensus        82 E~~leIEYv~~~~aP~pl~~~~hdDWVSsv~~~-~~~IltgsYDg~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~-~~  159 (423)
T KOG0313|consen   82 EEILEIEYVEAITAPKPLQCFLHDDWVSSVKGA-SKWILTGSYDGTSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNS-SS  159 (423)
T ss_pred             hheeEEEEEEecCCCCccccccchhhhhhhccc-CceEEEeecCCeeEEEecCCceEEEEecCCcceeeeEEEecCC-cc
Confidence            789999999999999999999999999999987 7899999999999999999999999999999999988875443 22


Q ss_pred             EEEEEccCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCC-Cccce
Q 036314           81 VTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAA-GNQVS  159 (347)
Q Consensus        81 ~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~-~~~~~  159 (347)
                      ..++++|.|.++++|..+.++...     ...+.-.||+.+|-+|+..++|.+++|||+|.+|+||+.+..... .+...
T Consensus       160 ~~fvsas~Dqtl~Lw~~~~~~~~~-----~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s  234 (423)
T KOG0313|consen  160 CLFVSASMDQTLRLWKWNVGENKV-----KALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSS  234 (423)
T ss_pred             ceEEEecCCceEEEEEecCchhhh-----hHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccc
Confidence            468999999999999998765322     222333599999999999999999999999999999994332211 11111


Q ss_pred             eeeccCCCccccccccccccccccCCccceEEEEeCCCCeEEEEecCCcEEEEECCCCceeeeeeeCeeeEEEEeeCCCC
Q 036314          160 IKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWPQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEGS  239 (347)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (347)
                       .+++.+........+++++.++.||+.+|.++.|++...++|+|+|.+|+.||++++....++.+++.+.|++.++ ..
T Consensus       235 -~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~-~~  312 (423)
T KOG0313|consen  235 -NRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSP-LS  312 (423)
T ss_pred             -hhhhhhhhhhhcccccCceEEecccccceeeEEEcCCCceEeecccceEEEEEeecccceeeeecCcceeEeeccc-cc
Confidence             1222222223334456778899999999999999998899999999999999999999998898899999999976 56


Q ss_pred             cEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCc-cceeecCCCCeE
Q 036314          240 ALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAW-PLSVIDSHKDKV  318 (347)
Q Consensus       240 ~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~-~~~~~~~h~~~v  318 (347)
                      .+|++|+.|..+++||+|.+......++|.+|.++|.+|.|+|.+.++|+++|.|+++++||+|... ++..+.+|.++|
T Consensus       313 ~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKv  392 (423)
T KOG0313|consen  313 KLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKV  392 (423)
T ss_pred             ceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceE
Confidence            7899999999999999998766667889999999999999999999999999999999999999877 899999999999


Q ss_pred             EEEeecCCCEEEEccCCceEEEeecccC
Q 036314          319 LCADWWRGDSVISGGVDSKLCVSSGVSI  346 (347)
Q Consensus       319 ~~~~~~~~~~l~s~s~D~~v~vw~~~~~  346 (347)
                      ++++|+.+..++|||.|++|+|..|..+
T Consensus       393 l~vdW~~~~~IvSGGaD~~l~i~~~~~~  420 (423)
T KOG0313|consen  393 LSVDWNEGGLIVSGGADNKLRIFKGSPI  420 (423)
T ss_pred             EEEeccCCceEEeccCcceEEEeccccc
Confidence            9999999999999999999999998754

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1.1e-52  Score=355.00  Aligned_cols=283  Identities=25%  Similarity=0.429  Sum_probs=252.0

Q ss_pred             CCCcCCceeeccCC-CCCEEEEEecCCeEEEEcCC-CeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEec
Q 036314           20 PSLHDDWVSAVDGS-NPGFILTGCYDNLGRVWKAG-GVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKF   97 (347)
Q Consensus        20 ~~~h~~~v~~~~~~-~~~~l~sg~~d~~i~iw~~~-~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~   97 (347)
                      ..+-+.+|..+.|+ ++..|||||++|++++|+.+ ...+.+|.||...|.++.|+|..  ....||||+.||++++|++
T Consensus       171 Q~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~--~~~~lat~s~Dgtvklw~~  248 (459)
T KOG0272|consen  171 QVGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVD--SDLNLATASADGTVKLWKL  248 (459)
T ss_pred             hccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCC--CccceeeeccCCceeeecc
Confidence            34678899999998 67799999999999999964 67788999999999999999974  1246999999999999999


Q ss_pred             cccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCcccccccccc
Q 036314           98 DAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGE  177 (347)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (347)
                      +..+         ++..|.+|...|..|+|+|+|++|+|+|.|.+.++||+++..                         
T Consensus       249 ~~e~---------~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~-------------------------  294 (459)
T KOG0272|consen  249 SQET---------PLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKS-------------------------  294 (459)
T ss_pred             CCCc---------chhhhhcchhhheeeeecCCCceeeecccccchhhcccccch-------------------------
Confidence            8653         556789999999999999999999999999999999998642                         


Q ss_pred             ccccccCCccceEEEEe-CCCCeEEEEecCCcEEEEECCCCceeeeeee-CeeeEEEEeeCCCCcEEEEecCCCcEEEEe
Q 036314          178 AISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFC-GKALNCIDIGGEGSALIAAGGSDPILRIWD  255 (347)
Q Consensus       178 ~~~~~~~h~~~v~~~~~-~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~la~~~~d~~i~iwd  255 (347)
                      .+-...||...|.+++| ++|-.++||+.|..=+|||+++++++..+.. .+++..++|+|+ +..+|+|+.|++++|||
T Consensus       295 ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPN-Gy~lATgs~Dnt~kVWD  373 (459)
T KOG0272|consen  295 ELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPN-GYHLATGSSDNTCKVWD  373 (459)
T ss_pred             hhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCC-ceEEeecCCCCcEEEee
Confidence            34456899999999999 5788899999999999999999999987764 357899999765 57899999999999999


Q ss_pred             CCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecCCCCeEEEEeec-CCCEEEEccC
Q 036314          256 PRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKVLCADWW-RGDSVISGGV  334 (347)
Q Consensus       256 ~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h~~~v~~~~~~-~~~~l~s~s~  334 (347)
                      ++..   .++.++.+|.+-|+.|.|+|..+++|+|+|+|++++||.-+++.+++++.||.++|.+++++ +++.|+|+|.
T Consensus       374 LR~r---~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~  450 (459)
T KOG0272|consen  374 LRMR---SELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSF  450 (459)
T ss_pred             eccc---ccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEecc
Confidence            9863   34788999999999999999888999999999999999999999999999999999999997 5778999999


Q ss_pred             CceEEEee
Q 036314          335 DSKLCVSS  342 (347)
Q Consensus       335 D~~v~vw~  342 (347)
                      |+++++|.
T Consensus       451 DRT~KLW~  458 (459)
T KOG0272|consen  451 DRTIKLWR  458 (459)
T ss_pred             Cceeeecc
Confidence            99999996

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=9.9e-52  Score=345.34  Aligned_cols=304  Identities=27%  Similarity=0.396  Sum_probs=254.1

Q ss_pred             CceEEEEEEeccCCCCc------CCCCCcCCceeeccCCC-CCEEEEEecCCeEEEEcCC-CeEEEEeeccCCceEEEEE
Q 036314            1 EKVLEIEYIKAVAPQKE------EEPSLHDDWVSAVDGSN-PGFILTGCYDNLGRVWKAG-GVCTHILEGHCGAVSSVNI   72 (347)
Q Consensus         1 ~~~~~~~~~~~~~~~~~------~~~~~h~~~v~~~~~~~-~~~l~sg~~d~~i~iw~~~-~~~~~~l~~h~~~V~~v~~   72 (347)
                      |+++.+-|+-...+..-      ....||...|-+++|++ +..|||||.|.|+|+||.. ....++.++|..-|.+++|
T Consensus        86 e~~l~lvyqpqavfrvrpvtrCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvaw  165 (480)
T KOG0271|consen   86 EDVLTLVYQPQAVFRVRPVTRCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAW  165 (480)
T ss_pred             hheeeEEeccchhhcccccceeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEE
Confidence            67888888833221111      12558999999999995 5699999999999999975 4467889999999999999


Q ss_pred             eecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEe-----CCCCEEEEeeCCCcEEEEe
Q 036314           73 IKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAE-----TSGNMVCSGSWDCTISLWR  147 (347)
Q Consensus        73 ~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s-----~~~~~l~sgs~Dg~I~iwd  147 (347)
                      +|++    ..||||+.||+|++||..+++.        ....|++|+..|++++|.     |..++|+|+|.||+|+|||
T Consensus       166 sPDg----k~iASG~~dg~I~lwdpktg~~--------~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd  233 (480)
T KOG0271|consen  166 SPDG----KKIASGSKDGSIRLWDPKTGQQ--------IGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWD  233 (480)
T ss_pred             CCCc----chhhccccCCeEEEecCCCCCc--------ccccccCcccceeEEeecccccCCCccceecccCCCCEEEEE
Confidence            9944    5799999999999999887764        345689999999999985     4578999999999999999


Q ss_pred             cCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEeCCCCeEEEEecCCcEEEEECCCCceeeeeeeC-
Q 036314          148 TNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWPQQETIYSASWDHSVRTWDVEMGKDLSDIFCG-  226 (347)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~-  226 (347)
                      +..                         ++++..+.+|+.+|.|+.|-...+++|+|.|++|++|+...|...+.+..+ 
T Consensus       234 ~~~-------------------------~~~~~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHa  288 (480)
T KOG0271|consen  234 TKL-------------------------GTCVRTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHA  288 (480)
T ss_pred             ccC-------------------------ceEEEEeccCccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccc
Confidence            864                         356778999999999999987789999999999999999998877766543 


Q ss_pred             eeeEEEEee-----------C------------------------CCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCC
Q 036314          227 KALNCIDIG-----------G------------------------EGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSH  271 (347)
Q Consensus       227 ~~~~~~~~~-----------~------------------------~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h  271 (347)
                      +-++.++++           +                        ..+..+++|++|.++.+|+....  ..++..+.+|
T Consensus       289 hwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~--kkpi~rmtgH  366 (480)
T KOG0271|consen  289 HWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKS--KKPITRMTGH  366 (480)
T ss_pred             hheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEeccccc--ccchhhhhch
Confidence            234544442           1                        12235899999999999998753  3457788899


Q ss_pred             CCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecCCCCeEEEEeecC-CCEEEEccCCceEEEeecc
Q 036314          272 NSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKVLCADWWR-GDSVISGGVDSKLCVSSGV  344 (347)
Q Consensus       272 ~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~l~s~s~D~~v~vw~~~  344 (347)
                      ...|+.+.||||+. ++||+|.|+.||+||-++|+.+.+|.||-+.|+-++|+. .+.|+|||.|.|+++|+.-
T Consensus       367 q~lVn~V~fSPd~r-~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~  439 (480)
T KOG0271|consen  367 QALVNHVSFSPDGR-YIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVR  439 (480)
T ss_pred             hhheeeEEECCCcc-EEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEee
Confidence            99999999999996 599999999999999999999999999999999999985 4569999999999999853

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=4.7e-47  Score=317.36  Aligned_cols=284  Identities=27%  Similarity=0.413  Sum_probs=232.6

Q ss_pred             CCCcCCceeeccCCC-CCEEEEEecCCeEEEEcCC-C-eEEEEeeccCCceEEEEEeecC-CCceEEEEEccCCCcEEEE
Q 036314           20 PSLHDDWVSAVDGSN-PGFILTGCYDNLGRVWKAG-G-VCTHILEGHCGAVSSVNIIKSD-GLKYVTVATASKDQTLRLW   95 (347)
Q Consensus        20 ~~~h~~~v~~~~~~~-~~~l~sg~~d~~i~iw~~~-~-~~~~~l~~h~~~V~~v~~~~~~-~~~~~~l~s~s~Dg~v~~w   95 (347)
                      -.+|..||.+++.++ +..||||+.||+|++||+. | .....|.||...|++++|.|-. ......||++|.||+|+||
T Consensus       153 ~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIW  232 (480)
T KOG0271|consen  153 CKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIW  232 (480)
T ss_pred             ecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEE
Confidence            458999999999884 5699999999999999974 4 4567899999999999997622 1123479999999999999


Q ss_pred             eccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCcccccccc
Q 036314           96 KFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLE  175 (347)
Q Consensus        96 d~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (347)
                      |+..++         ++..+.||+.+|+|+.|..+| +++|||.|++||+|+..++                        
T Consensus       233 d~~~~~---------~~~~lsgHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG------------------------  278 (480)
T KOG0271|consen  233 DTKLGT---------CVRTLSGHTASVTCVRWGGEG-LIYSGSQDRTIKVWRALDG------------------------  278 (480)
T ss_pred             EccCce---------EEEEeccCccceEEEEEcCCc-eEEecCCCceEEEEEccch------------------------
Confidence            998764         556789999999999997554 8999999999999998764                        


Q ss_pred             ccccccccCCccceEEEEeC-------------------------------------CCCeEEEEecCCcEEEEECCCCc
Q 036314          176 GEAISTLVGHTQCVSSVVWP-------------------------------------QQETIYSASWDHSVRTWDVEMGK  218 (347)
Q Consensus       176 ~~~~~~~~~h~~~v~~~~~~-------------------------------------~~~~l~s~s~dg~v~vwd~~~~~  218 (347)
                       .+++.++||...|+.++.+                                     .++.++||+.|.++.+|+....+
T Consensus       279 -~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~k  357 (480)
T KOG0271|consen  279 -KLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSK  357 (480)
T ss_pred             -hHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccc
Confidence             2344445555554444332                                     23569999999999999975443


Q ss_pred             -eeeeee-eCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCc
Q 036314          219 -DLSDIF-CGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGK  296 (347)
Q Consensus       219 -~~~~~~-~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~  296 (347)
                       ++..+. +...++.+.|+| ++.++|+++.|..|++||.+.+   ..+.+|.||-+.|..|+|+.|. ++|+|||.|.+
T Consensus       358 kpi~rmtgHq~lVn~V~fSP-d~r~IASaSFDkSVkLW~g~tG---k~lasfRGHv~~VYqvawsaDs-RLlVS~SkDsT  432 (480)
T KOG0271|consen  358 KPITRMTGHQALVNHVSFSP-DGRYIASASFDKSVKLWDGRTG---KFLASFRGHVAAVYQVAWSADS-RLLVSGSKDST  432 (480)
T ss_pred             cchhhhhchhhheeeEEECC-CccEEEEeecccceeeeeCCCc---chhhhhhhccceeEEEEeccCc-cEEEEcCCCce
Confidence             444443 344678899965 5679999999999999998754   3467888999999999999987 57999999999


Q ss_pred             EEEEEcCCCccceeecCCCCeEEEEeecC-CCEEEEccCCceEEEeec
Q 036314          297 VMLWDLRTAWPLSVIDSHKDKVLCADWWR-GDSVISGGVDSKLCVSSG  343 (347)
Q Consensus       297 i~lwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~l~s~s~D~~v~vw~~  343 (347)
                      +++||+++.+....+-||.++|.+++|+| |+++++|+.|+.+++|+.
T Consensus       433 LKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~~  480 (480)
T KOG0271|consen  433 LKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWRH  480 (480)
T ss_pred             EEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeecC
Confidence            99999999888888999999999999985 889999999999999974

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=1.5e-41  Score=273.76  Aligned_cols=279  Identities=27%  Similarity=0.423  Sum_probs=225.2

Q ss_pred             CCCCcCCceeeccCC--CCCEEEEEecCCeEEEEcCC------CeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCC
Q 036314           19 EPSLHDDWVSAVDGS--NPGFILTGCYDNLGRVWKAG------GVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQ   90 (347)
Q Consensus        19 ~~~~h~~~v~~~~~~--~~~~l~sg~~d~~i~iw~~~------~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg   90 (347)
                      ...+|+++|++++..  +.+++++++.|.++.+|++.      |..++.|.||+-.|..+..++++    .+.+++|.|+
T Consensus        10 tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg----~~alS~swD~   85 (315)
T KOG0279|consen   10 TLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDG----NFALSASWDG   85 (315)
T ss_pred             eecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCC----ceEEeccccc
Confidence            366999999999954  46799999999999999863      56688999999999999999854    4789999999


Q ss_pred             cEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccc
Q 036314           91 TLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVE  170 (347)
Q Consensus        91 ~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~  170 (347)
                      ++|+||+.+++         +.+.|.||..-|.+++|++|.++++|||.|.+|++|++-.                    
T Consensus        86 ~lrlWDl~~g~---------~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g--------------------  136 (315)
T KOG0279|consen   86 TLRLWDLATGE---------STRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLG--------------------  136 (315)
T ss_pred             eEEEEEecCCc---------EEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecc--------------------
Confidence            99999998764         5567999999999999999999999999999999998753                    


Q ss_pred             ccccccccccccc--CCccceEEEEeC-C--CCeEEEEecCCcEEEEECCCCceeeeeee-CeeeEEEEeeCCCCcEEEE
Q 036314          171 EPQLEGEAISTLV--GHTQCVSSVVWP-Q--QETIYSASWDHSVRTWDVEMGKDLSDIFC-GKALNCIDIGGEGSALIAA  244 (347)
Q Consensus       171 ~~~~~~~~~~~~~--~h~~~v~~~~~~-~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~la~  244 (347)
                            .+..++.  .+++.|.++.|+ +  ..+|+++|+|++||+||+++.+....+.. ...++.+.++|+ +.+.++
T Consensus       137 ------~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpD-Gslcas  209 (315)
T KOG0279|consen  137 ------VCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPD-GSLCAS  209 (315)
T ss_pred             ------cEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCC-CCEEec
Confidence                  2222332  237899999994 3  45799999999999999998765555443 346788898664 568899


Q ss_pred             ecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeec----CC-----C
Q 036314          245 GGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVID----SH-----K  315 (347)
Q Consensus       245 ~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~----~h-----~  315 (347)
                      |+.||.+.+||++..+   .+..+ +|.+.|.+++|+|+. + .+.+..+..|+|||+++...+..+.    +.     .
T Consensus       210 Ggkdg~~~LwdL~~~k---~lysl-~a~~~v~sl~fspnr-y-wL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~  283 (315)
T KOG0279|consen  210 GGKDGEAMLWDLNEGK---NLYSL-EAFDIVNSLCFSPNR-Y-WLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAGD  283 (315)
T ss_pred             CCCCceEEEEEccCCc---eeEec-cCCCeEeeEEecCCc-e-eEeeccCCceEEEeccchhhhhhccccccccccccCC
Confidence            9999999999998643   24454 688999999999986 3 4445566679999999877665542    21     2


Q ss_pred             CeEEEEeec-CCCEEEEccCCceEEEeec
Q 036314          316 DKVLCADWW-RGDSVISGGVDSKLCVSSG  343 (347)
Q Consensus       316 ~~v~~~~~~-~~~~l~s~s~D~~v~vw~~  343 (347)
                      ...++++|+ +|..|.+|-.|+.|++|..
T Consensus       284 ~~clslaws~dG~tLf~g~td~~irv~qv  312 (315)
T KOG0279|consen  284 PICLSLAWSADGQTLFAGYTDNVIRVWQV  312 (315)
T ss_pred             cEEEEEEEcCCCcEEEeeecCCcEEEEEe
Confidence            345678887 6888999999999999974

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=2.3e-41  Score=268.51  Aligned_cols=269  Identities=20%  Similarity=0.373  Sum_probs=222.8

Q ss_pred             CEEEEEecCCeEEEEcC-CCeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeee
Q 036314           36 GFILTGCYDNLGRVWKA-GGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKI  114 (347)
Q Consensus        36 ~~l~sg~~d~~i~iw~~-~~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~  114 (347)
                      -+|||+|+|.|||+|.. .|.|.++++.....|+.+.+.|+..    .||+++ ...||+||+.+++       +.++.+
T Consensus        11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~----~LAaa~-~qhvRlyD~~S~n-------p~Pv~t   78 (311)
T KOG0315|consen   11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKK----DLAAAG-NQHVRLYDLNSNN-------PNPVAT   78 (311)
T ss_pred             eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcc----hhhhcc-CCeeEEEEccCCC-------CCceeE
Confidence            48999999999999995 6999999998889999999998543    466554 4589999998764       236788


Q ss_pred             eeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEe
Q 036314          115 LRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW  194 (347)
Q Consensus       115 ~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  194 (347)
                      +.+|+..|++|.|..+|++++|||.||++||||++...+.                          ..-.|..+|+++..
T Consensus        79 ~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~q--------------------------R~~~~~spVn~vvl  132 (311)
T KOG0315|consen   79 FEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQ--------------------------RNYQHNSPVNTVVL  132 (311)
T ss_pred             EeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccc--------------------------hhccCCCCcceEEe
Confidence            9999999999999999999999999999999999864321                          12235678888875


Q ss_pred             -CCCCeEEEEecCCcEEEEECCCCceeeeeee--CeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCC---CCCCeEEe
Q 036314          195 -PQQETIYSASWDHSVRTWDVEMGKDLSDIFC--GKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPG---TSAPVFQF  268 (347)
Q Consensus       195 -~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~---~~~~~~~~  268 (347)
                       |++..|+++..+|.|++||+....+...+..  ...+..+.+.+++ ..++++..-|++++|++-...   ...|+..+
T Consensus       133 hpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dg-sml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~  211 (311)
T KOG0315|consen  133 HPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDG-SMLAAANNKGNCYVWRLLNHQTASELEPVHKF  211 (311)
T ss_pred             cCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCC-cEEEEecCCccEEEEEccCCCccccceEhhhe
Confidence             6677899999999999999988766555432  3467788887665 567777888999999975421   23456778


Q ss_pred             cCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCC-ccceeecCCCCeEEEEeec-CCCEEEEccCCceEEEeecc
Q 036314          269 SSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTA-WPLSVIDSHKDKVLCADWW-RGDSVISGGVDSKLCVSSGV  344 (347)
Q Consensus       269 ~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~-~~~~~~~~h~~~v~~~~~~-~~~~l~s~s~D~~v~vw~~~  344 (347)
                      ..|..++..|.+||++. +||++|.|.+++||+.++. +...++++|+.-++.++|| +|.+|+|||.|+.+++|+..
T Consensus       212 ~ah~~~il~C~lSPd~k-~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~  288 (311)
T KOG0315|consen  212 QAHNGHILRCLLSPDVK-YLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLS  288 (311)
T ss_pred             ecccceEEEEEECCCCc-EEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccc
Confidence            89999999999999996 5999999999999999987 4456789999999999997 78999999999999999864

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=6.3e-43  Score=295.90  Aligned_cols=242  Identities=24%  Similarity=0.389  Sum_probs=213.5

Q ss_pred             ccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCC--CCEEEEeeC
Q 036314           62 GHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETS--GNMVCSGSW  139 (347)
Q Consensus        62 ~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~--~~~l~sgs~  139 (347)
                      |-+.+|..+.|+.++    ..|+|||.+|.+++|+.+..         ..+.+|.||+..|.++.|+|.  +..++||+.
T Consensus       173 gd~rPis~~~fS~ds----~~laT~swsG~~kvW~~~~~---------~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~  239 (459)
T KOG0272|consen  173 GDTRPISGCSFSRDS----KHLATGSWSGLVKVWSVPQC---------NLLQTLRGHTSRVGAAVFHPVDSDLNLATASA  239 (459)
T ss_pred             cCCCcceeeEeecCC----CeEEEeecCCceeEeecCCc---------ceeEEEeccccceeeEEEccCCCccceeeecc
Confidence            456788999998844    47999999999999998654         356789999999999999997  569999999


Q ss_pred             CCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEe-CCCCeEEEEecCCcEEEEECCCCc
Q 036314          140 DCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGK  218 (347)
Q Consensus       140 Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~l~s~s~dg~v~vwd~~~~~  218 (347)
                      ||++++|++...                         +.+..+.+|...|..++| |+|++|+|++.|.+-++||++++.
T Consensus       240 Dgtvklw~~~~e-------------------------~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~  294 (459)
T KOG0272|consen  240 DGTVKLWKLSQE-------------------------TPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKS  294 (459)
T ss_pred             CCceeeeccCCC-------------------------cchhhhhcchhhheeeeecCCCceeeecccccchhhcccccch
Confidence            999999998652                         357789999999999998 789999999999999999999987


Q ss_pred             eeeeee-eCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcE
Q 036314          219 DLSDIF-CGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKV  297 (347)
Q Consensus       219 ~~~~~~-~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i  297 (347)
                      .+.... +.+.+.+++|.++ +.++++|+.|..-+|||+|..   ..+..+.+|.+.|.+|+|+|+| ++|||||.|+++
T Consensus       295 ElL~QEGHs~~v~~iaf~~D-GSL~~tGGlD~~~RvWDlRtg---r~im~L~gH~k~I~~V~fsPNG-y~lATgs~Dnt~  369 (459)
T KOG0272|consen  295 ELLLQEGHSKGVFSIAFQPD-GSLAATGGLDSLGRVWDLRTG---RCIMFLAGHIKEILSVAFSPNG-YHLATGSSDNTC  369 (459)
T ss_pred             hhHhhcccccccceeEecCC-CceeeccCccchhheeecccC---cEEEEecccccceeeEeECCCc-eEEeecCCCCcE
Confidence            765554 3457899999765 569999999999999999964   3578899999999999999998 689999999999


Q ss_pred             EEEEcCCCccceeecCCCCeEEEEeecC--CCEEEEccCCceEEEeecccC
Q 036314          298 MLWDLRTAWPLSVIDSHKDKVLCADWWR--GDSVISGGVDSKLCVSSGVSI  346 (347)
Q Consensus       298 ~lwd~~~~~~~~~~~~h~~~v~~~~~~~--~~~l~s~s~D~~v~vw~~~~~  346 (347)
                      +|||++....+.++-+|.+.|..|.|+|  |++|+|+|.|++++||++.+-
T Consensus       370 kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~  420 (459)
T KOG0272|consen  370 KVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTW  420 (459)
T ss_pred             EEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCc
Confidence            9999999888999999999999999986  778999999999999998743

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.2e-41  Score=281.67  Aligned_cols=282  Identities=25%  Similarity=0.414  Sum_probs=243.7

Q ss_pred             CCCcCCceeeccCCCCC-EEEEEecCCeEEEEcC-CCeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEec
Q 036314           20 PSLHDDWVSAVDGSNPG-FILTGCYDNLGRVWKA-GGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKF   97 (347)
Q Consensus        20 ~~~h~~~v~~~~~~~~~-~l~sg~~d~~i~iw~~-~~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~   97 (347)
                      ..+|...|+.+-+.+.. ++|+++.|++|++||. +|++...|+||++.|..|.|...+    ..|+++|.|=.+++||.
T Consensus       104 l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~G----k~l~tcSsDl~~~LWd~  179 (406)
T KOG0295|consen  104 LAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASG----KYLATCSSDLSAKLWDF  179 (406)
T ss_pred             hhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCc----cEEEecCCccchhheeH
Confidence            45799999999987654 7888999999999996 578888999999999999998744    58999999999999998


Q ss_pred             cccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCcccccccccc
Q 036314           98 DAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGE  177 (347)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (347)
                      +..        .++++.+.+|+..|.++.|-|.|.+++|+++|.+|+.|++.++                         .
T Consensus       180 ~~~--------~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg-------------------------~  226 (406)
T KOG0295|consen  180 DTF--------FRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTG-------------------------Y  226 (406)
T ss_pred             HHH--------HHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccc-------------------------e
Confidence            642        3466678899999999999999999999999999999998763                         5


Q ss_pred             ccccccCCccceEEEEeC-CCCeEEEEecCCcEEEEECCCCceeeeee-eCeeeEEEEeeCC--------------CCcE
Q 036314          178 AISTLVGHTQCVSSVVWP-QQETIYSASWDHSVRTWDVEMGKDLSDIF-CGKALNCIDIGGE--------------GSAL  241 (347)
Q Consensus       178 ~~~~~~~h~~~v~~~~~~-~~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~~--------------~~~~  241 (347)
                      +++++.+|...|..+... +|..+++++.|.++++|-+.+.++...+. +..++.|++|.|.              ++.+
T Consensus       227 cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~  306 (406)
T KOG0295|consen  227 CVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQV  306 (406)
T ss_pred             eEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccE
Confidence            688999999999998864 67778999999999999998886544443 3457788877542              2358


Q ss_pred             EEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecCCCCeEEEE
Q 036314          242 IAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKVLCA  321 (347)
Q Consensus       242 la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h~~~v~~~  321 (347)
                      +.+++.|++|++||+..   ...++++.+|.+||..++|+|.|. +|+|+.+|+++++||+++.++++++..|+..|.++
T Consensus       307 l~s~SrDktIk~wdv~t---g~cL~tL~ghdnwVr~~af~p~Gk-yi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~l  382 (406)
T KOG0295|consen  307 LGSGSRDKTIKIWDVST---GMCLFTLVGHDNWVRGVAFSPGGK-YILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSL  382 (406)
T ss_pred             EEeecccceEEEEeccC---CeEEEEEecccceeeeeEEcCCCe-EEEEEecCCcEEEEEeccceeeeccCCCcceeEEE
Confidence            89999999999999974   456899999999999999999986 59999999999999999999999999999999999


Q ss_pred             eecC-CCEEEEccCCceEEEee
Q 036314          322 DWWR-GDSVISGGVDSKLCVSS  342 (347)
Q Consensus       322 ~~~~-~~~l~s~s~D~~v~vw~  342 (347)
                      +|+. -.+++|||-|.++++|-
T Consensus       383 Dfh~~~p~VvTGsVdqt~KvwE  404 (406)
T KOG0295|consen  383 DFHKTAPYVVTGSVDQTVKVWE  404 (406)
T ss_pred             ecCCCCceEEeccccceeeeee
Confidence            9974 44899999999999993

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=5.4e-40  Score=266.29  Aligned_cols=291  Identities=22%  Similarity=0.284  Sum_probs=243.5

Q ss_pred             CcCCCCCcCCceeeccCC-CCCEEEEEecCCeEEEEcC-CCeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEE
Q 036314           16 KEEEPSLHDDWVSAVDGS-NPGFILTGCYDNLGRVWKA-GGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLR   93 (347)
Q Consensus        16 ~~~~~~~h~~~v~~~~~~-~~~~l~sg~~d~~i~iw~~-~~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~   93 (347)
                      .-..+.||.+-|.++.++ +...|+|+|.||.+.|||. .+..++.++-...-|...+|+|++.    .+|+|+.|+..-
T Consensus        47 ~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~----~VAcGGLdN~Cs  122 (343)
T KOG0286|consen   47 TRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGN----FVACGGLDNKCS  122 (343)
T ss_pred             eEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCC----eEEecCcCceeE
Confidence            345688999999999988 5679999999999999996 5667778888888999999999654    799999999999


Q ss_pred             EEeccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCcccccc
Q 036314           94 LWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQ  173 (347)
Q Consensus        94 ~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (347)
                      ||++...+-   ....+..+.+.+|++-+.++.|-+| ..|+|+|-|.++.+||++++                      
T Consensus       123 iy~ls~~d~---~g~~~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~g----------------------  176 (343)
T KOG0286|consen  123 IYPLSTRDA---EGNVRVSRELAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIETG----------------------  176 (343)
T ss_pred             EEecccccc---cccceeeeeecCccceeEEEEEcCC-CceEecCCCceEEEEEcccc----------------------
Confidence            999974311   1122344578999999999999885 56889999999999999864                      


Q ss_pred             ccccccccccCCccceEEEEeC--CCCeEEEEecCCcEEEEECCCCceeeeeeeC-eeeEEEEeeCCCCcEEEEecCCCc
Q 036314          174 LEGEAISTLVGHTQCVSSVVWP--QQETIYSASWDHSVRTWDVEMGKDLSDIFCG-KALNCIDIGGEGSALIAAGGSDPI  250 (347)
Q Consensus       174 ~~~~~~~~~~~h~~~v~~~~~~--~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~la~~~~d~~  250 (347)
                         ..+..+.||++.|.++.++  +++.++||+.|++-+|||++.+.+...+..+ ..++.+.|.|++ .-|++|++|++
T Consensus       177 ---~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G-~afatGSDD~t  252 (343)
T KOG0286|consen  177 ---QQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSG-DAFATGSDDAT  252 (343)
T ss_pred             ---eEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCC-CeeeecCCCce
Confidence               4567889999999999974  6788999999999999999999888877654 368999998765 57899999999


Q ss_pred             EEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecCCCCeEEEEeecC-CCEE
Q 036314          251 LRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKVLCADWWR-GDSV  329 (347)
Q Consensus       251 i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~l  329 (347)
                      +++||+|.. +...++.-..-...|++++||..|+ +|.+|..|.++.+||.-+++.+..+.||.+.|.|+.-+| |.-+
T Consensus       253 cRlyDlRaD-~~~a~ys~~~~~~gitSv~FS~SGR-lLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av  330 (343)
T KOG0286|consen  253 CRLYDLRAD-QELAVYSHDSIICGITSVAFSKSGR-LLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAV  330 (343)
T ss_pred             eEEEeecCC-cEEeeeccCcccCCceeEEEccccc-EEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEE
Confidence            999999863 2323333333345799999999885 688889999999999999999999999999999999975 6679


Q ss_pred             EEccCCceEEEee
Q 036314          330 ISGGVDSKLCVSS  342 (347)
Q Consensus       330 ~s~s~D~~v~vw~  342 (347)
                      +|||.|.+++||.
T Consensus       331 ~TgSWDs~lriW~  343 (343)
T KOG0286|consen  331 ATGSWDSTLRIWA  343 (343)
T ss_pred             EecchhHheeecC
Confidence            9999999999995

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=3.6e-42  Score=285.02  Aligned_cols=276  Identities=24%  Similarity=0.428  Sum_probs=232.0

Q ss_pred             cCCCCCcCCceeeccCCCCCEEEEEecCCeEEEEcCCC-eEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEE
Q 036314           17 EEEPSLHDDWVSAVDGSNPGFILTGCYDNLGRVWKAGG-VCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLW   95 (347)
Q Consensus        17 ~~~~~~h~~~v~~~~~~~~~~l~sg~~d~~i~iw~~~~-~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~w   95 (347)
                      .+.++...+.|.|+.. +++.++||..|+||++||... .|+..|.||++.|.|+.+..      ..+++||.|.+|++|
T Consensus       190 inc~Se~skgVYClQY-DD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~------rviisGSSDsTvrvW  262 (499)
T KOG0281|consen  190 INCRSENSKGVYCLQY-DDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDE------RVIVSGSSDSTVRVW  262 (499)
T ss_pred             ecCCcccCCceEEEEe-cchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccc------eEEEecCCCceEEEE
Confidence            3445556788999987 456899999999999999754 68889999999999999854      479999999999999


Q ss_pred             eccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCcccccccc
Q 036314           96 KFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLE  175 (347)
Q Consensus        96 d~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (347)
                      |+++++         ++.++-+|..+|..+.|+  +.+++|+|.|.+|++||+..+.                      +
T Consensus       263 Dv~tge---------~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps----------------------~  309 (499)
T KOG0281|consen  263 DVNTGE---------PLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPT----------------------D  309 (499)
T ss_pred             eccCCc---------hhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCch----------------------H
Confidence            999886         455677899999999997  5699999999999999987642                      1


Q ss_pred             ccccccccCCccceEEEEeCCCCeEEEEecCCcEEEEECCCCceeeeeeeCe-eeEEEEeeCCCCcEEEEecCCCcEEEE
Q 036314          176 GEAISTLVGHTQCVSSVVWPQQETIYSASWDHSVRTWDVEMGKDLSDIFCGK-ALNCIDIGGEGSALIAAGGSDPILRIW  254 (347)
Q Consensus       176 ~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~la~~~~d~~i~iw  254 (347)
                      -++.+.+.||..+|+.+.|.+ ++++++|.|++|++|++.+++.++.+..+. .+.|+..   .+.++++|+.|++|++|
T Consensus       310 it~rrVLvGHrAaVNvVdfd~-kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY---r~rlvVSGSSDntIRlw  385 (499)
T KOG0281|consen  310 ITLRRVLVGHRAAVNVVDFDD-KYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY---RDRLVVSGSSDNTIRLW  385 (499)
T ss_pred             HHHHHHHhhhhhheeeecccc-ceEEEecCCceEEEEeccceeeehhhhcccccceehhc---cCeEEEecCCCceEEEE
Confidence            234568899999999998854 699999999999999999999988887544 5667665   45689999999999999


Q ss_pred             eCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCcc---------ceeecCCCCeEEEEeecC
Q 036314          255 DPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWP---------LSVIDSHKDKVLCADWWR  325 (347)
Q Consensus       255 d~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~---------~~~~~~h~~~v~~~~~~~  325 (347)
                      |+..+   ..+..++||..-|.++.|+..   .+++|++||+|++||+..+..         +.++..|++.|..+.| +
T Consensus       386 di~~G---~cLRvLeGHEeLvRciRFd~k---rIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF-D  458 (499)
T KOG0281|consen  386 DIECG---ACLRVLEGHEELVRCIRFDNK---RIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF-D  458 (499)
T ss_pred             ecccc---HHHHHHhchHHhhhheeecCc---eeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee-c
Confidence            99864   346778999999999999753   599999999999999987643         3345679999999999 5


Q ss_pred             CCEEEEccCCceEEEeec
Q 036314          326 GDSVISGGVDSKLCVSSG  343 (347)
Q Consensus       326 ~~~l~s~s~D~~v~vw~~  343 (347)
                      ..++++++.|.+|.||+.
T Consensus       459 ~fqIvsssHddtILiWdF  476 (499)
T KOG0281|consen  459 EFQIISSSHDDTILIWDF  476 (499)
T ss_pred             ceEEEeccCCCeEEEEEc
Confidence            668999999999999985

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=3.5e-40  Score=274.10  Aligned_cols=278  Identities=22%  Similarity=0.422  Sum_probs=233.6

Q ss_pred             CCCcCCceeeccCCCC-CEEEEEecCCeEEEEcCC-CeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEec
Q 036314           20 PSLHDDWVSAVDGSNP-GFILTGCYDNLGRVWKAG-GVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKF   97 (347)
Q Consensus        20 ~~~h~~~v~~~~~~~~-~~l~sg~~d~~i~iw~~~-~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~   97 (347)
                      +.+|.+||.++++.++ ..|+||+.|++|+|||+. |+...+|.||-..|..+++++-    .-+|.++++|++||.||+
T Consensus       147 i~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~r----HpYlFs~gedk~VKCwDL  222 (460)
T KOG0285|consen  147 ISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKR----HPYLFSAGEDKQVKCWDL  222 (460)
T ss_pred             hhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeeccc----CceEEEecCCCeeEEEec
Confidence            6799999999998864 599999999999999975 7788899999999999999873    347999999999999999


Q ss_pred             cccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCcccccccccc
Q 036314           98 DAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGE  177 (347)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (347)
                      +.++.         ++...||-..|.|++.+|.-+.|++|++|.++|+||+++.                         .
T Consensus       223 e~nkv---------IR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr-------------------------~  268 (460)
T KOG0285|consen  223 EYNKV---------IRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTR-------------------------A  268 (460)
T ss_pred             hhhhh---------HHHhccccceeEEEeccccceeEEecCCcceEEEeeeccc-------------------------c
Confidence            87754         4457799999999999999999999999999999999863                         2


Q ss_pred             ccccccCCccceEEEEe-CCCCeEEEEecCCcEEEEECCCCceeeeeeeC-eeeEEEEeeCCCCcEEEEecCCCcEEEEe
Q 036314          178 AISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFCG-KALNCIDIGGEGSALIAAGGSDPILRIWD  255 (347)
Q Consensus       178 ~~~~~~~h~~~v~~~~~-~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~la~~~~d~~i~iwd  255 (347)
                      .+.++.||+.+|..+.+ +.+..++++|.|++|++||++.++....+..+ ..+.+++++|. ...||+++.| .|+-|+
T Consensus       269 ~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~-e~~fASas~d-nik~w~  346 (460)
T KOG0285|consen  269 SVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPK-ENLFASASPD-NIKQWK  346 (460)
T ss_pred             eEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCc-hhhhhccCCc-cceecc
Confidence            35688999999999988 45778999999999999999999888777654 46889998764 4577887765 589999


Q ss_pred             CCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeec--------CCCCeEEEEeec-CC
Q 036314          256 PRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVID--------SHKDKVLCADWW-RG  326 (347)
Q Consensus       256 ~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~--------~h~~~v~~~~~~-~~  326 (347)
                      +..+.   .+..+++|+.-|+++..+.|+  .+++|+.+|.+..||+++|-..+.++        .-+..|++.+|- .|
T Consensus       347 ~p~g~---f~~nlsgh~~iintl~~nsD~--v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg  421 (460)
T KOG0285|consen  347 LPEGE---FLQNLSGHNAIINTLSVNSDG--VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTG  421 (460)
T ss_pred             CCccc---hhhccccccceeeeeeeccCc--eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccC
Confidence            86532   355689999999999999887  58999999999999999874433321        123467888884 58


Q ss_pred             CEEEEccCCceEEEee
Q 036314          327 DSVISGGVDSKLCVSS  342 (347)
Q Consensus       327 ~~l~s~s~D~~v~vw~  342 (347)
                      .+|+||..|.+|++|-
T Consensus       422 ~rlit~eadKtIk~~k  437 (460)
T KOG0285|consen  422 SRLITGEADKTIKMYK  437 (460)
T ss_pred             ceEEeccCCcceEEEe
Confidence            8999999999999995

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=2e-39  Score=279.02  Aligned_cols=288  Identities=21%  Similarity=0.360  Sum_probs=239.0

Q ss_pred             CCCcC-CCCCcCCceeeccCC--CCCEEEEEecCCeEEEEcC--CCeEEEEeeccCCceEEEEEeecCCCceEEEEEccC
Q 036314           14 PQKEE-EPSLHDDWVSAVDGS--NPGFILTGCYDNLGRVWKA--GGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASK   88 (347)
Q Consensus        14 ~~~~~-~~~~h~~~v~~~~~~--~~~~l~sg~~d~~i~iw~~--~~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~   88 (347)
                      |.+.. ...+|+..|+++.+.  .+.+|+++|.|+.|+||+.  .+.|+++|.||..+|.++.|+..+    ..++|+|.
T Consensus       203 Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g----~~fLS~sf  278 (503)
T KOG0282|consen  203 PKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCG----TSFLSASF  278 (503)
T ss_pred             cHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccC----Ceeeeeec
Confidence            34433 356999999999965  4679999999999999997  478999999999999999998844    46899999


Q ss_pred             CCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCC-CEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCC
Q 036314           89 DQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSG-NMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNN  167 (347)
Q Consensus        89 Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~-~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~  167 (347)
                      |+.||+||+++|+++         ..+.. ...+.|+.|+||+ +.+++|+.|+.|+.||++++                
T Consensus       279 D~~lKlwDtETG~~~---------~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~----------------  332 (503)
T KOG0282|consen  279 DRFLKLWDTETGQVL---------SRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSG----------------  332 (503)
T ss_pred             ceeeeeeccccceEE---------EEEec-CCCceeeecCCCCCcEEEEecCCCcEEEEeccch----------------
Confidence            999999999998642         23321 3446889999998 89999999999999999864                


Q ss_pred             ccccccccccccccccCCccceEEEEe-CCCCeEEEEecCCcEEEEECCCCceeeeeeeC--eeeEEEEeeCCCCcEEEE
Q 036314          168 QVEEPQLEGEAISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFCG--KALNCIDIGGEGSALIAA  244 (347)
Q Consensus       168 ~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~la~  244 (347)
                               +.++.+..|-++|..+.| +++.++++++.|++++||+.+.+..++.+...  ....|+..+|.+ ..+++
T Consensus       333 ---------kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~-~~~~a  402 (503)
T KOG0282|consen  333 ---------KVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNG-KWFAA  402 (503)
T ss_pred             ---------HHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCC-Ceehh
Confidence                     456778888899999987 67889999999999999999988777655433  245677887665 57788


Q ss_pred             ecCCCcEEEEeCCCCCCCCCeEEecCCCC--CeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecCCCCeEEEEe
Q 036314          245 GGSDPILRIWDPRKPGTSAPVFQFSSHNS--WISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKVLCAD  322 (347)
Q Consensus       245 ~~~d~~i~iwd~~~~~~~~~~~~~~~h~~--~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h~~~v~~~~  322 (347)
                      -+-|+.|.+|.+..+-+......+.||..  +-..|.|||||. +|++|+.||.+.+||+++-+.+..+.+|...|..++
T Consensus       403 Qs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~-~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~  481 (503)
T KOG0282|consen  403 QSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGR-TLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVD  481 (503)
T ss_pred             hccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCC-eEEeecCCccEEEeechhhhhhhccccCCcceEEEE
Confidence            88999999998765433334556778864  567789999997 599999999999999999888999999999999999


Q ss_pred             ecCC--CEEEEccCCceEEEee
Q 036314          323 WWRG--DSVISGGVDSKLCVSS  342 (347)
Q Consensus       323 ~~~~--~~l~s~s~D~~v~vw~  342 (347)
                      |+|.  ..+||||.||-|++|.
T Consensus       482 wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  482 WHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             ecCCCcceeEecccCceeEecC
Confidence            9984  4699999999999995

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=2.4e-37  Score=268.61  Aligned_cols=302  Identities=19%  Similarity=0.329  Sum_probs=237.9

Q ss_pred             cCCCCcCC-CCCcCCceeeccCC-CCCEEEEEecCCeEEEEcC-CCeEEEEee---ccCCceEEEEEeecCCCceEEEEE
Q 036314           12 VAPQKEEE-PSLHDDWVSAVDGS-NPGFILTGCYDNLGRVWKA-GGVCTHILE---GHCGAVSSVNIIKSDGLKYVTVAT   85 (347)
Q Consensus        12 ~~~~~~~~-~~~h~~~v~~~~~~-~~~~l~sg~~d~~i~iw~~-~~~~~~~l~---~h~~~V~~v~~~~~~~~~~~~l~s   85 (347)
                      =+|++++. ...|..+|.+++++ +|.++||.|.||++.+||- .|..+-.|.   +|.+.|.++.|+|+.    ..++|
T Consensus       177 GPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs----~~~~T  252 (603)
T KOG0318|consen  177 GPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDS----TQFLT  252 (603)
T ss_pred             CCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCC----ceEEE
Confidence            45889986 55799999999999 4669999999999999995 577787888   999999999999944    47999


Q ss_pred             ccCCCcEEEEecccccccc----------------------------------CccccceeeeeeccccceEEEEEeCCC
Q 036314           86 ASKDQTLRLWKFDAEELVN----------------------------------HPKKIRSFKILRGHKASVHSIAAETSG  131 (347)
Q Consensus        86 ~s~Dg~v~~wd~~~~~~~~----------------------------------~~~~~~~~~~~~~h~~~V~~v~~s~~~  131 (347)
                      +|.|.++|+||+.++++..                                  .+....+++++.||..+|++++.++++
T Consensus       253 ~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~  332 (603)
T KOG0318|consen  253 VSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDG  332 (603)
T ss_pred             ecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCC
Confidence            9999999999998776532                                  112234556789999999999999999


Q ss_pred             CEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEeCCCCeEEEEecCCcEEE
Q 036314          132 NMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWPQQETIYSASWDHSVRT  211 (347)
Q Consensus       132 ~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~dg~v~v  211 (347)
                      ++|+||+.||.|.-|+...+....                        ..-++|+..|.+++-...+.+++.++|.++++
T Consensus       333 ~~i~SgsyDG~I~~W~~~~g~~~~------------------------~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~  388 (603)
T KOG0318|consen  333 KTIYSGSYDGHINSWDSGSGTSDR------------------------LAGKGHTNQIKGMAASESGELFTIGWDDTLRV  388 (603)
T ss_pred             CEEEeeccCceEEEEecCCccccc------------------------cccccccceEEEEeecCCCcEEEEecCCeEEE
Confidence            999999999999999987653210                        01156888888887666677888999999999


Q ss_pred             EECCCCceeee-------------------------------ee---------eCeeeEEEEeeCCCCcEEEEecCCCcE
Q 036314          212 WDVEMGKDLSD-------------------------------IF---------CGKALNCIDIGGEGSALIAAGGSDPIL  251 (347)
Q Consensus       212 wd~~~~~~~~~-------------------------------~~---------~~~~~~~~~~~~~~~~~la~~~~d~~i  251 (347)
                      .++..+.....                               ++         ......++++++ ++..+|.|++|++|
T Consensus       389 ~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~-~~~~vaVGG~Dgkv  467 (603)
T KOG0318|consen  389 ISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSP-DGSEVAVGGQDGKV  467 (603)
T ss_pred             EecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcC-CCCEEEEecccceE
Confidence            87643211000                               00         011234566654 45688999999999


Q ss_pred             EEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccc-eeecCCCCeEEEEeecCCC-EE
Q 036314          252 RIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPL-SVIDSHKDKVLCADWWRGD-SV  329 (347)
Q Consensus       252 ~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~-~~~~~h~~~v~~~~~~~~~-~l  329 (347)
                      ++|.+...+. .+......|...|+++++|||+. +||+|...+.+-+||+.+.+.. ..+.-|+++|.|++|+|.+ ++
T Consensus       468 hvysl~g~~l-~ee~~~~~h~a~iT~vaySpd~~-yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~v  545 (603)
T KOG0318|consen  468 HVYSLSGDEL-KEEAKLLEHRAAITDVAYSPDGA-YLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLV  545 (603)
T ss_pred             EEEEecCCcc-cceeeeecccCCceEEEECCCCc-EEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEE
Confidence            9999875432 33445668999999999999996 5999999999999999987652 3455699999999999865 69


Q ss_pred             EEccCCceEEEeecc
Q 036314          330 ISGGVDSKLCVSSGV  344 (347)
Q Consensus       330 ~s~s~D~~v~vw~~~  344 (347)
                      ||||.|.+|.||+..
T Consensus       546 ATGSlDt~Viiysv~  560 (603)
T KOG0318|consen  546 ATGSLDTNVIIYSVK  560 (603)
T ss_pred             EeccccceEEEEEcc
Confidence            999999999999853

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=2.7e-39  Score=272.81  Aligned_cols=278  Identities=21%  Similarity=0.345  Sum_probs=235.0

Q ss_pred             CCceeeccCC-CCCEEEEEecCCeEEEEcCCCe-EEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccc
Q 036314           24 DDWVSAVDGS-NPGFILTGCYDNLGRVWKAGGV-CTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEE  101 (347)
Q Consensus        24 ~~~v~~~~~~-~~~~l~sg~~d~~i~iw~~~~~-~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~  101 (347)
                      +..|..|..+ +|..|++|+.-|...+|+.... ...++..|...|.++.|++++    ..++||+.+|.||+|+.+-+.
T Consensus        96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g----~wmiSgD~gG~iKyWqpnmnn  171 (464)
T KOG0284|consen   96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNG----TWMISGDKGGMIKYWQPNMNN  171 (464)
T ss_pred             ccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCC----CEEEEcCCCceEEecccchhh
Confidence            3467777777 4579999999999999997542 234578999999999999854    479999999999999976432


Q ss_pred             cccCccccceeeeeeccc-cceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccc
Q 036314          102 LVNHPKKIRSFKILRGHK-ASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAIS  180 (347)
Q Consensus       102 ~~~~~~~~~~~~~~~~h~-~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (347)
                                ++.+.+|. ..|++++|+|+...|+|+|.||+|+|||....                         +..+
T Consensus       172 ----------Vk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~-------------------------kee~  216 (464)
T KOG0284|consen  172 ----------VKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMP-------------------------KEER  216 (464)
T ss_pred             ----------hHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCC-------------------------chhh
Confidence                      23445554 88999999999999999999999999997643                         2234


Q ss_pred             cccCCccceEEEEeC-CCCeEEEEecCCcEEEEECCCCceeeeeee-CeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCC
Q 036314          181 TLVGHTQCVSSVVWP-QQETIYSASWDHSVRTWDVEMGKDLSDIFC-GKALNCIDIGGEGSALIAAGGSDPILRIWDPRK  258 (347)
Q Consensus       181 ~~~~h~~~v~~~~~~-~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~  258 (347)
                      .+.||.-.|.++.|. ....|+++|.|+.|++||.++++++.++.. .+.+..+.|.+++ +.|++++.|..+++||++.
T Consensus       217 vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~-N~Llt~skD~~~kv~DiR~  295 (464)
T KOG0284|consen  217 VLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNG-NWLLTGSKDQSCKVFDIRT  295 (464)
T ss_pred             eeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCC-CeeEEccCCceEEEEehhH
Confidence            678999999999994 566899999999999999999999988864 4568889997765 8999999999999999983


Q ss_pred             CCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceee-cCCCCeEEEEeecC-CCEEEEccCCc
Q 036314          259 PGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVI-DSHKDKVLCADWWR-GDSVISGGVDS  336 (347)
Q Consensus       259 ~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~-~~h~~~v~~~~~~~-~~~l~s~s~D~  336 (347)
                         .+.++++.+|.+.|.++.|+|-...+|.+|+.||.|..|.+...+++..+ .+|...|++++|+| |-.|++|+.|.
T Consensus       296 ---mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~  372 (464)
T KOG0284|consen  296 ---MKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDR  372 (464)
T ss_pred             ---hHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCc
Confidence               34578889999999999999998889999999999999999866777665 57999999999998 88899999999


Q ss_pred             eEEEeecc
Q 036314          337 KLCVSSGV  344 (347)
Q Consensus       337 ~v~vw~~~  344 (347)
                      ++++|.-+
T Consensus       373 t~rfw~r~  380 (464)
T KOG0284|consen  373 TVRFWTRN  380 (464)
T ss_pred             ceeeeccC
Confidence            99999743

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=2.9e-37  Score=249.02  Aligned_cols=250  Identities=23%  Similarity=0.376  Sum_probs=210.8

Q ss_pred             EEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEEEE
Q 036314           57 THILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCS  136 (347)
Q Consensus        57 ~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~s  136 (347)
                      .-+|.+|++.|.+++..+.+.   ..+++++.|.++.+|++...+    .+.-.+.+.+.||+..|..++.++||++++|
T Consensus         8 ~~tl~gh~d~Vt~la~~~~~~---~~l~sasrDk~ii~W~L~~dd----~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS   80 (315)
T KOG0279|consen    8 RGTLEGHTDWVTALAIKIKNS---DILVSASRDKTIIVWKLTSDD----IKYGVPVRRLTGHSHFVSDVVLSSDGNFALS   80 (315)
T ss_pred             eeeecCCCceEEEEEeecCCC---ceEEEcccceEEEEEEeccCc----cccCceeeeeeccceEecceEEccCCceEEe
Confidence            347999999999999988633   479999999999999997642    2334567789999999999999999999999


Q ss_pred             eeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEe-CCCCeEEEEecCCcEEEEECC
Q 036314          137 GSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVE  215 (347)
Q Consensus       137 gs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~l~s~s~dg~v~vwd~~  215 (347)
                      +|+|+++++||+..+                         +..+.+.||+..|.++++ +++.+++|||.|++|++||+.
T Consensus        81 ~swD~~lrlWDl~~g-------------------------~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~  135 (315)
T KOG0279|consen   81 ASWDGTLRLWDLATG-------------------------ESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTL  135 (315)
T ss_pred             ccccceEEEEEecCC-------------------------cEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeec
Confidence            999999999999864                         345678999999999998 577889999999999999987


Q ss_pred             CCceeeeeee---CeeeEEEEeeCCC-CcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEE
Q 036314          216 MGKDLSDIFC---GKALNCIDIGGEG-SALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISA  291 (347)
Q Consensus       216 ~~~~~~~~~~---~~~~~~~~~~~~~-~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~  291 (347)
                      .. +..++..   ..=+.|+.|+|.. ...|++++.|++|++||++.   ......+.+|.++++.+.+||||. +.++|
T Consensus       136 g~-ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~---~~l~~~~~gh~~~v~t~~vSpDGs-lcasG  210 (315)
T KOG0279|consen  136 GV-CKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRN---CQLRTTFIGHSGYVNTVTVSPDGS-LCASG  210 (315)
T ss_pred             cc-EEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCC---cchhhccccccccEEEEEECCCCC-EEecC
Confidence            54 3334432   2347999998874 56889999999999999985   334567889999999999999996 69999


Q ss_pred             eCCCcEEEEEcCCCccceeecCCCCeEEEEeecCCCEEEEccCCceEEEeecc
Q 036314          292 SYDGKVMLWDLRTAWPLSVIDSHKDKVLCADWWRGDSVISGGVDSKLCVSSGV  344 (347)
Q Consensus       292 s~D~~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~D~~v~vw~~~  344 (347)
                      +.||.+.+||++.++.+..+. |...|.+++|+|..+-..+..+..|+||+..
T Consensus       211 gkdg~~~LwdL~~~k~lysl~-a~~~v~sl~fspnrywL~~at~~sIkIwdl~  262 (315)
T KOG0279|consen  211 GKDGEAMLWDLNEGKNLYSLE-AFDIVNSLCFSPNRYWLCAATATSIKIWDLE  262 (315)
T ss_pred             CCCceEEEEEccCCceeEecc-CCCeEeeEEecCCceeEeeccCCceEEEecc
Confidence            999999999999999888875 6789999999998875555667779999875

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=8.2e-38  Score=281.19  Aligned_cols=312  Identities=21%  Similarity=0.310  Sum_probs=240.2

Q ss_pred             CcCCceeeccCCC-CCEEEEEecCCeEEEEcCC-CeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccc
Q 036314           22 LHDDWVSAVDGSN-PGFILTGCYDNLGRVWKAG-GVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDA   99 (347)
Q Consensus        22 ~h~~~v~~~~~~~-~~~l~sg~~d~~i~iw~~~-~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~   99 (347)
                      -|+.+|-.++|.+ +++|+|||.|+.+++||.. +.|.+.|.||.+.|.++.|.|.-..  ..|++|..|+++++||+..
T Consensus       103 ~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~--~lL~sg~~D~~v~vwnl~~  180 (775)
T KOG0319|consen  103 IHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNR--WLLASGATDGTVRVWNLND  180 (775)
T ss_pred             ccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccch--hheeecCCCceEEEEEccc
Confidence            3999999999874 5799999999999999975 6899999999999999999986543  6789999999999999975


Q ss_pred             cccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCC--------------------Cc--c
Q 036314          100 EELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAA--------------------GN--Q  157 (347)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~--------------------~~--~  157 (347)
                      ..        .++.++..|.+.|++++|++|+..++++|+|..|.|||+.+....                    ++  .
T Consensus       181 ~~--------tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~  252 (775)
T KOG0319|consen  181 KR--------TCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEY  252 (775)
T ss_pred             Cc--------hHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceE
Confidence            42        145677899999999999999999999999999999997532110                    00  0


Q ss_pred             ceeee-------------------ccC-C-----------------------Cccc-------------------c----
Q 036314          158 VSIKK-------------------RKG-N-----------------------NQVE-------------------E----  171 (347)
Q Consensus       158 ~~~~~-------------------~~~-~-----------------------~~~~-------------------~----  171 (347)
                      .....                   +.. .                       ....                   +    
T Consensus       253 ~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~l  332 (775)
T KOG0319|consen  253 IITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFL  332 (775)
T ss_pred             EEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeec
Confidence            00000                   000 0                       0000                   0    


Q ss_pred             ----c--------------cccccccccccCCccceEEEE-eCCCCeEEEEecCCcEEEEECCCCcee----eeee-eCe
Q 036314          172 ----P--------------QLEGEAISTLVGHTQCVSSVV-WPQQETIYSASWDHSVRTWDVEMGKDL----SDIF-CGK  227 (347)
Q Consensus       172 ----~--------------~~~~~~~~~~~~h~~~v~~~~-~~~~~~l~s~s~dg~v~vwd~~~~~~~----~~~~-~~~  227 (347)
                          .              ...+...+.+.||++.|.++. |..+..|+|+|.|+++++|-++.+...    .... +.+
T Consensus       333 G~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~  412 (775)
T KOG0319|consen  333 GPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTN  412 (775)
T ss_pred             CCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhccccc
Confidence                0              000112235678999999997 677779999999999999987443221    1112 234


Q ss_pred             eeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCC--CCCCeE----EecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEE
Q 036314          228 ALNCIDIGGEGSALIAAGGSDPILRIWDPRKPG--TSAPVF----QFSSHNSWISACKWHNKSWFHLISASYDGKVMLWD  301 (347)
Q Consensus       228 ~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~--~~~~~~----~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd  301 (347)
                      .+.+++++-.+..+|++++.|.++++|++...+  .....+    +...|.+.|++++.+|++. ++||||.|++.+||+
T Consensus       413 svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndk-LiAT~SqDktaKiW~  491 (775)
T KOG0319|consen  413 SVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDK-LIATGSQDKTAKIWD  491 (775)
T ss_pred             ccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCc-eEEecccccceeeec
Confidence            677888876677899999999999999997622  111222    3457999999999999985 799999999999999


Q ss_pred             cCCCccceeecCCCCeEEEEeecC-CCEEEEccCCceEEEeecc
Q 036314          302 LRTAWPLSVIDSHKDKVLCADWWR-GDSVISGGVDSKLCVSSGV  344 (347)
Q Consensus       302 ~~~~~~~~~~~~h~~~v~~~~~~~-~~~l~s~s~D~~v~vw~~~  344 (347)
                      +.....+.++.||+..|+||.|++ ++.|||+|.|+||+||+.-
T Consensus       492 le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is  535 (775)
T KOG0319|consen  492 LEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSIS  535 (775)
T ss_pred             ccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEec
Confidence            998888999999999999999986 6789999999999999853

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=1.8e-36  Score=243.40  Aligned_cols=281  Identities=24%  Similarity=0.380  Sum_probs=226.0

Q ss_pred             CCCCcCCceeeccCCCC--CEEEEEecCCeEEEEcCCC----eEEEEee-ccCCceEEEEEeecCCCceEEEEEccCCCc
Q 036314           19 EPSLHDDWVSAVDGSNP--GFILTGCYDNLGRVWKAGG----VCTHILE-GHCGAVSSVNIIKSDGLKYVTVATASKDQT   91 (347)
Q Consensus        19 ~~~~h~~~v~~~~~~~~--~~l~sg~~d~~i~iw~~~~----~~~~~l~-~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~   91 (347)
                      ...+|++.++.+++.++  .+|||+|.|..||+|+..+    .|...+. +|+..|.+++|+|.+    ++|++||.|.+
T Consensus         9 ~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g----~~La~aSFD~t   84 (312)
T KOG0645|consen    9 KLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHG----RYLASASFDAT   84 (312)
T ss_pred             eecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCC----cEEEEeeccce
Confidence            46789999999998865  3899999999999999763    4555553 899999999999944    48999999999


Q ss_pred             EEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCcccc
Q 036314           92 LRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEE  171 (347)
Q Consensus        92 v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~  171 (347)
                      +-||.-..++       +++..++.||+..|.|++|+++|.+||++|+|+.|=||.+...+                   
T Consensus        85 ~~Iw~k~~~e-------fecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~dedd-------------------  138 (312)
T KOG0645|consen   85 VVIWKKEDGE-------FECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDD-------------------  138 (312)
T ss_pred             EEEeecCCCc-------eeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCC-------------------
Confidence            9999866543       46788999999999999999999999999999999999886432                   


Q ss_pred             ccccccccccccCCccceEEEEe-CCCCeEEEEecCCcEEEEECCC-C--ceeeeeeeC-eeeEEEEeeCCCCcEEEEec
Q 036314          172 PQLEGEAISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEM-G--KDLSDIFCG-KALNCIDIGGEGSALIAAGG  246 (347)
Q Consensus       172 ~~~~~~~~~~~~~h~~~v~~~~~-~~~~~l~s~s~dg~v~vwd~~~-~--~~~~~~~~~-~~~~~~~~~~~~~~~la~~~  246 (347)
                         +.++...+..|+..|..+.| |....|+|+|+|++|++|.-.. .  .++.++..+ ..+.+++|.+.+ ..+++++
T Consensus       139 ---Efec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G-~rl~s~s  214 (312)
T KOG0645|consen  139 ---EFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIG-SRLVSCS  214 (312)
T ss_pred             ---cEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCC-ceEEEec
Confidence               23567788999999999999 4567899999999999998763 3  234445433 378899997654 5778999


Q ss_pred             CCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCC--ccc-----eeecCCCCeEE
Q 036314          247 SDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTA--WPL-----SVIDSHKDKVL  319 (347)
Q Consensus       247 ~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~--~~~-----~~~~~h~~~v~  319 (347)
                      +|++++||-....  . +    .-|...+..+.|. ++  .|+|++.|+.|+|+.....  ++.     +.-..|...|.
T Consensus       215 dD~tv~Iw~~~~~--~-~----~~~sr~~Y~v~W~-~~--~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVN  284 (312)
T KOG0645|consen  215 DDGTVSIWRLYTD--L-S----GMHSRALYDVPWD-NG--VIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVN  284 (312)
T ss_pred             CCcceEeeeeccC--c-c----hhcccceEeeeec-cc--ceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccc
Confidence            9999999975421  1 1    1366778889998 44  5999999999999976642  121     12246888999


Q ss_pred             EEeecC--CCEEEEccCCceEEEeec
Q 036314          320 CADWWR--GDSVISGGVDSKLCVSSG  343 (347)
Q Consensus       320 ~~~~~~--~~~l~s~s~D~~v~vw~~  343 (347)
                      ++.|.|  .++|++||.||+|++|..
T Consensus       285 sV~w~p~~~~~L~s~~DDG~v~~W~l  310 (312)
T KOG0645|consen  285 SVQWNPKVSNRLASGGDDGIVNFWEL  310 (312)
T ss_pred             eEEEcCCCCCceeecCCCceEEEEEe
Confidence            999998  578999999999999973

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=1.3e-36  Score=246.75  Aligned_cols=252  Identities=22%  Similarity=0.321  Sum_probs=213.0

Q ss_pred             EEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEEEE
Q 036314           57 THILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCS  136 (347)
Q Consensus        57 ~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~s  136 (347)
                      .++|+||.++|.++.|+++.    ++|+++|.||.+.+||.-+..         ....++--...|..+||+|.|+++|.
T Consensus        48 rr~LkGH~~Ki~~~~ws~Ds----r~ivSaSqDGklIvWDs~Ttn---------K~haipl~s~WVMtCA~sPSg~~VAc  114 (343)
T KOG0286|consen   48 RRTLKGHLNKIYAMDWSTDS----RRIVSASQDGKLIVWDSFTTN---------KVHAIPLPSSWVMTCAYSPSGNFVAC  114 (343)
T ss_pred             EEEecccccceeeeEecCCc----CeEEeeccCCeEEEEEccccc---------ceeEEecCceeEEEEEECCCCCeEEe
Confidence            47899999999999999844    579999999999999975432         12234455788999999999999999


Q ss_pred             eeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEeCCCCeEEEEecCCcEEEEECCC
Q 036314          137 GSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWPQQETIYSASWDHSVRTWDVEM  216 (347)
Q Consensus       137 gs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~dg~v~vwd~~~  216 (347)
                      |+.|....||++...+..+..                   ...+.+.+|+..+.+..|.++..|+++|.|.++.+||+++
T Consensus       115 GGLdN~Csiy~ls~~d~~g~~-------------------~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~  175 (343)
T KOG0286|consen  115 GGLDNKCSIYPLSTRDAEGNV-------------------RVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIET  175 (343)
T ss_pred             cCcCceeEEEecccccccccc-------------------eeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEccc
Confidence            999999999998754322111                   1245789999999999998888999999999999999999


Q ss_pred             CceeeeeeeC-eeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCC
Q 036314          217 GKDLSDIFCG-KALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDG  295 (347)
Q Consensus       217 ~~~~~~~~~~-~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~  295 (347)
                      ++.+..+..+ ..+.++++.|.+++.+++|+-|...+|||+|.+   ...++|.+|.+-|+++.|.|+|. -++|||.|+
T Consensus       176 g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~---~c~qtF~ghesDINsv~ffP~G~-afatGSDD~  251 (343)
T KOG0286|consen  176 GQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSG---QCVQTFEGHESDINSVRFFPSGD-AFATGSDDA  251 (343)
T ss_pred             ceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCc---ceeEeecccccccceEEEccCCC-eeeecCCCc
Confidence            9988777644 368899998868889999999999999999964   45789999999999999999996 599999999


Q ss_pred             cEEEEEcCCCccceeecC--CCCeEEEEeec-CCCEEEEccCCceEEEeecc
Q 036314          296 KVMLWDLRTAWPLSVIDS--HKDKVLCADWW-RGDSVISGGVDSKLCVSSGV  344 (347)
Q Consensus       296 ~i~lwd~~~~~~~~~~~~--h~~~v~~~~~~-~~~~l~s~s~D~~v~vw~~~  344 (347)
                      ++|+||+|..+++..++.  -...|.+++|| .|++|.+|..|.++.||+.-
T Consensus       252 tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtl  303 (343)
T KOG0286|consen  252 TCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTL  303 (343)
T ss_pred             eeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeecc
Confidence            999999999888887752  22468999998 58889999999999999964

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=5.6e-37  Score=263.10  Aligned_cols=277  Identities=20%  Similarity=0.356  Sum_probs=233.6

Q ss_pred             CcCCceeeccCC-CCCEEEEEecCCeEEEEcCCCeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEecccc
Q 036314           22 LHDDWVSAVDGS-NPGFILTGCYDNLGRVWKAGGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAE  100 (347)
Q Consensus        22 ~h~~~v~~~~~~-~~~~l~sg~~d~~i~iw~~~~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~  100 (347)
                      .-+..|++++.+ +|.+||+|+.||.+|+|+..|....+|..|.++|.++.|...+    .+|++++.|+++.+||..++
T Consensus       233 ~~nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~~tl~~HkgPI~slKWnk~G----~yilS~~vD~ttilwd~~~g  308 (524)
T KOG0273|consen  233 PSNKDVTSLDWNNDGTLLATGSEDGEARIWNKDGNLISTLGQHKGPIFSLKWNKKG----TYILSGGVDGTTILWDAHTG  308 (524)
T ss_pred             CccCCcceEEecCCCCeEEEeecCcEEEEEecCchhhhhhhccCCceEEEEEcCCC----CEEEeccCCccEEEEeccCc
Confidence            345789999987 6789999999999999999998888999999999999998744    57999999999999998776


Q ss_pred             ccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccc
Q 036314          101 ELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAIS  180 (347)
Q Consensus       101 ~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (347)
                      +         ..+.+.-|+.+-..|.|-.+ .-+++++.|+.|+++.+...                         .+..
T Consensus       309 ~---------~~q~f~~~s~~~lDVdW~~~-~~F~ts~td~~i~V~kv~~~-------------------------~P~~  353 (524)
T KOG0273|consen  309 T---------VKQQFEFHSAPALDVDWQSN-DEFATSSTDGCIHVCKVGED-------------------------RPVK  353 (524)
T ss_pred             e---------EEEeeeeccCCccceEEecC-ceEeecCCCceEEEEEecCC-------------------------Ccce
Confidence            5         34456668888677887644 56889999999999987642                         3466


Q ss_pred             cccCCccceEEEEe-CCCCeEEEEecCCcEEEEECCCCceeeeeeeC-eeeEEEEeeCC--------CCcEEEEecCCCc
Q 036314          181 TLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFCG-KALNCIDIGGE--------GSALIAAGGSDPI  250 (347)
Q Consensus       181 ~~~~h~~~v~~~~~-~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~-~~~~~~~~~~~--------~~~~la~~~~d~~  250 (347)
                      ++.+|...|.++.| |.+..|+|+|.|++++||..........+..+ +.+..+.++|.        .+..+++++.|++
T Consensus       354 t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dst  433 (524)
T KOG0273|consen  354 TFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDST  433 (524)
T ss_pred             eeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCe
Confidence            88899999999999 56788999999999999998777766666533 35556655543        4457889999999


Q ss_pred             EEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecCCCCeEEEEeec-CCCEE
Q 036314          251 LRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKVLCADWW-RGDSV  329 (347)
Q Consensus       251 i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h~~~v~~~~~~-~~~~l  329 (347)
                      |++||+..   ..+++.|..|...|.+++|+|++. +||+|+.||.|.+|+.++++..+.+.+ .+.|..+.|+ .|++|
T Consensus       434 V~lwdv~~---gv~i~~f~kH~~pVysvafS~~g~-ylAsGs~dg~V~iws~~~~~l~~s~~~-~~~Ifel~Wn~~G~kl  508 (524)
T KOG0273|consen  434 VKLWDVES---GVPIHTLMKHQEPVYSVAFSPNGR-YLASGSLDGCVHIWSTKTGKLVKSYQG-TGGIFELCWNAAGDKL  508 (524)
T ss_pred             EEEEEccC---CceeEeeccCCCceEEEEecCCCc-EEEecCCCCeeEeccccchheeEeecC-CCeEEEEEEcCCCCEE
Confidence            99999875   456899999999999999999996 599999999999999999998888876 5679999997 78999


Q ss_pred             EEccCCceEEEee
Q 036314          330 ISGGVDSKLCVSS  342 (347)
Q Consensus       330 ~s~s~D~~v~vw~  342 (347)
                      ..+-.|+.++|-+
T Consensus       509 ~~~~sd~~vcvld  521 (524)
T KOG0273|consen  509 GACASDGSVCVLD  521 (524)
T ss_pred             EEEecCCCceEEE
Confidence            8888899999865

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3.1e-37  Score=260.75  Aligned_cols=288  Identities=22%  Similarity=0.253  Sum_probs=231.5

Q ss_pred             CCCcCCCCCcCCceeeccCC-CCCEEEEEecCCeEEEEcCC--C--eEEEEeeccCCceEEEEEeecCCCceEEEEEccC
Q 036314           14 PQKEEEPSLHDDWVSAVDGS-NPGFILTGCYDNLGRVWKAG--G--VCTHILEGHCGAVSSVNIIKSDGLKYVTVATASK   88 (347)
Q Consensus        14 ~~~~~~~~~h~~~v~~~~~~-~~~~l~sg~~d~~i~iw~~~--~--~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~   88 (347)
                      .|+......|++.|+-+.|| +|.||||++.|.++.+|+..  +  +..+++.||..+|.-+.|+|++.    +|++++.
T Consensus       214 ~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdr----yLlaCg~  289 (519)
T KOG0293|consen  214 SQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDR----YLLACGF  289 (519)
T ss_pred             chhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCC----eEEecCc
Confidence            34455677899999999999 57799999999999999752  2  45788999999999999999654    6899999


Q ss_pred             CCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCc
Q 036314           89 DQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQ  168 (347)
Q Consensus        89 Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~  168 (347)
                      |..+++||+.++++....        -.+|...+.+++|.|||..+++|+.|++|..||+...                 
T Consensus       290 ~e~~~lwDv~tgd~~~~y--------~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn-----------------  344 (519)
T KOG0293|consen  290 DEVLSLWDVDTGDLRHLY--------PSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGN-----------------  344 (519)
T ss_pred             hHheeeccCCcchhhhhc--------ccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcc-----------------
Confidence            999999999988653211        1235578999999999999999999999999998632                 


Q ss_pred             cccccccccccccccCCc-cceEEEEe-CCCCeEEEEecCCcEEEEECCCCceeeeeeeCeeeEEEEeeCCCCcEEEEec
Q 036314          169 VEEPQLEGEAISTLVGHT-QCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEGSALIAAGG  246 (347)
Q Consensus       169 ~~~~~~~~~~~~~~~~h~-~~v~~~~~-~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~  246 (347)
                               .+..+++-. ..|.+++. ++|+++++...|..+++++.++......+....+++.+.++. ++.++.+.-
T Consensus       345 ---------~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~-d~k~~LvnL  414 (519)
T KOG0293|consen  345 ---------ILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISK-DGKLALVNL  414 (519)
T ss_pred             ---------hhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcC-CCcEEEEEc
Confidence                     122233322 45778876 689999999999999999988766655566677888888865 456777888


Q ss_pred             CCCcEEEEeCCCCCCCCCeEEecCCCCC--eeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecCCCCeEEEEeec
Q 036314          247 SDPILRIWDPRKPGTSAPVFQFSSHNSW--ISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKVLCADWW  324 (347)
Q Consensus       247 ~d~~i~iwd~~~~~~~~~~~~~~~h~~~--v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h~~~v~~~~~~  324 (347)
                      .+..+++||+..   ...+..+.||...  +-.-.|-..+..++||||+|+.|.||+.++++++.++.||...|.||+|+
T Consensus       415 ~~qei~LWDl~e---~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswN  491 (519)
T KOG0293|consen  415 QDQEIHLWDLEE---NKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWN  491 (519)
T ss_pred             ccCeeEEeecch---hhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecC
Confidence            899999999973   2335667788763  33334555454689999999999999999999999999999999999998


Q ss_pred             CCC--EEEEccCCceEEEeec
Q 036314          325 RGD--SVISGGVDSKLCVSSG  343 (347)
Q Consensus       325 ~~~--~l~s~s~D~~v~vw~~  343 (347)
                      |-+  .|||||.||+||||.-
T Consensus       492 P~~p~m~ASasDDgtIRIWg~  512 (519)
T KOG0293|consen  492 PADPEMFASASDDGTIRIWGP  512 (519)
T ss_pred             CCCHHHhhccCCCCeEEEecC
Confidence            744  6999999999999964

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=7.3e-37  Score=275.12  Aligned_cols=295  Identities=23%  Similarity=0.333  Sum_probs=243.3

Q ss_pred             CCCcCCceeeccCC--CCCEEEEEecCCeEEEEcCCCeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEec
Q 036314           20 PSLHDDWVSAVDGS--NPGFILTGCYDNLGRVWKAGGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKF   97 (347)
Q Consensus        20 ~~~h~~~v~~~~~~--~~~~l~sg~~d~~i~iw~~~~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~   97 (347)
                      ..|..+.|..++|-  .+++||.++.-+.+|+++..+..-..+.||+..|.+++...+    +..|+|||.|+++++|.+
T Consensus       319 ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~----g~llat~sKD~svilWr~  394 (775)
T KOG0319|consen  319 IVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSS----GDLLATGSKDKSVILWRL  394 (775)
T ss_pred             hcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeeccc----CcEEEEecCCceEEEEEe
Confidence            45888899999976  346899999999999999876555699999999999995442    247999999999999998


Q ss_pred             cccccccCccccceeeeeeccccceEEEEEeCCC-CEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccc
Q 036314           98 DAEELVNHPKKIRSFKILRGHKASVHSIAAETSG-NMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEG  176 (347)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~-~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (347)
                      +.+.     .+..++....+|++.|.+|+++.-+ .+|+++|.|+++++|++........+.                ..
T Consensus       395 ~~~~-----~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~----------------~~  453 (775)
T KOG0319|consen  395 NNNC-----SKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPI----------------VL  453 (775)
T ss_pred             cCCc-----chhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccc----------------ee
Confidence            5432     1223555678999999999997766 689999999999999987632211110                11


Q ss_pred             cccccccCCccceEEEEe-CCCCeEEEEecCCcEEEEECCCCceeeeeeeC-eeeEEEEeeCCCCcEEEEecCCCcEEEE
Q 036314          177 EAISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFCG-KALNCIDIGGEGSALIAAGGSDPILRIW  254 (347)
Q Consensus       177 ~~~~~~~~h~~~v~~~~~-~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~la~~~~d~~i~iw  254 (347)
                      ++..+...|.+.|++++. |++..+++||.|++.+||+++.......+..+ ..+.|+.|++.+ +++|+++.|.+|+||
T Consensus       454 ~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~d-q~laT~SgD~TvKIW  532 (775)
T KOG0319|consen  454 TCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKND-QLLATCSGDKTVKIW  532 (775)
T ss_pred             hhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEecccc-ceeEeccCCceEEEE
Confidence            223355679999999998 56778999999999999999987777777654 479999997765 589999999999999


Q ss_pred             eCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecCCCCeEEEEeecC-CCEEEEcc
Q 036314          255 DPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKVLCADWWR-GDSVISGG  333 (347)
Q Consensus       255 d~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~l~s~s  333 (347)
                      .+..   -..+.+|+||...|..+.|-.++. +|+||+.||-+|||++++++++.++.+|.++||++.-++ +..++||+
T Consensus       533 ~is~---fSClkT~eGH~~aVlra~F~~~~~-qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg  608 (775)
T KOG0319|consen  533 SIST---FSCLKTFEGHTSAVLRASFIRNGK-QLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGG  608 (775)
T ss_pred             Eecc---ceeeeeecCccceeEeeeeeeCCc-EEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecC
Confidence            9974   345889999999999999998875 699999999999999999999999999999999999875 66799999


Q ss_pred             CCceEEEeecc
Q 036314          334 VDSKLCVSSGV  344 (347)
Q Consensus       334 ~D~~v~vw~~~  344 (347)
                      .||.|.+|-=+
T Consensus       609 ~Dg~i~~wkD~  619 (775)
T KOG0319|consen  609 GDGRIIFWKDV  619 (775)
T ss_pred             CCeEEEEeecC
Confidence            99999999654

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=5.6e-37  Score=278.17  Aligned_cols=257  Identities=21%  Similarity=0.377  Sum_probs=213.3

Q ss_pred             CeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccc---------c-------------Cccccce
Q 036314           54 GVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELV---------N-------------HPKKIRS  111 (347)
Q Consensus        54 ~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~---------~-------------~~~~~~~  111 (347)
                      ..|.-++..-...++|..|+++.    .+||.|-.|..|++|.+...++.         .             .......
T Consensus       368 Sic~YT~~nt~~~v~ca~fSdds----smlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~  443 (707)
T KOG0263|consen  368 SICMYTFHNTYQGVTCAEFSDDS----SMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGT  443 (707)
T ss_pred             cEEEEEEEEcCCcceeEeecCCc----chhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCce
Confidence            34555555445568999998743    47999999999999998743211         0             1112233


Q ss_pred             eeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEE
Q 036314          112 FKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSS  191 (347)
Q Consensus       112 ~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~  191 (347)
                      .+++.||++||..+.|+|+.++|+|+|.|+++|+|.+.+.                         +++-.++||..+|+.
T Consensus       444 ~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~-------------------------s~~V~y~GH~~PVwd  498 (707)
T KOG0263|consen  444 SRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTW-------------------------SCLVIYKGHLAPVWD  498 (707)
T ss_pred             eEEeecCCCceeeeeecccccceeeccCCcceeeeecccc-------------------------eeEEEecCCCcceee
Confidence            4568999999999999999999999999999999998764                         334567899999999


Q ss_pred             EEe-CCCCeEEEEecCCcEEEEECCCCceeeeeeeC-eeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEec
Q 036314          192 VVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFCG-KALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFS  269 (347)
Q Consensus       192 ~~~-~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~  269 (347)
                      +.| |.|-+++|+|.|++-++|......+++.+.++ ..+.|+.|+|+ .+++|+|+.|.+||+||...+.   .+..|.
T Consensus       499 V~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPN-s~Y~aTGSsD~tVRlWDv~~G~---~VRiF~  574 (707)
T KOG0263|consen  499 VQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPN-SNYVATGSSDRTVRLWDVSTGN---SVRIFT  574 (707)
T ss_pred             EEecCCceEEEecCCCceeeeeecccCCchhhhcccccccceEEECCc-ccccccCCCCceEEEEEcCCCc---EEEEec
Confidence            998 56778999999999999998776666655433 46899999875 5689999999999999987543   367889


Q ss_pred             CCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecCCCCeEEEEeec-CCCEEEEccCCceEEEeecc
Q 036314          270 SHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKVLCADWW-RGDSVISGGVDSKLCVSSGV  344 (347)
Q Consensus       270 ~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h~~~v~~~~~~-~~~~l~s~s~D~~v~vw~~~  344 (347)
                      ||.+.|.+++|||+|. +||+|+.|+.|++||+..+..+..+.+|++.|.++.|+ +|..||+||.|.+|++|+.-
T Consensus       575 GH~~~V~al~~Sp~Gr-~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~  649 (707)
T KOG0263|consen  575 GHKGPVTALAFSPCGR-YLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLT  649 (707)
T ss_pred             CCCCceEEEEEcCCCc-eEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEch
Confidence            9999999999999986 59999999999999999999999999999999999998 68899999999999999854

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=8.3e-37  Score=262.08  Aligned_cols=280  Identities=23%  Similarity=0.388  Sum_probs=230.6

Q ss_pred             CcCCceeeccCC--CCCEEEEEecCCeEEEEcCCC---eEEE--Eee------cc----CCceEEEEEeecCCCceEEEE
Q 036314           22 LHDDWVSAVDGS--NPGFILTGCYDNLGRVWKAGG---VCTH--ILE------GH----CGAVSSVNIIKSDGLKYVTVA   84 (347)
Q Consensus        22 ~h~~~v~~~~~~--~~~~l~sg~~d~~i~iw~~~~---~~~~--~l~------~h----~~~V~~v~~~~~~~~~~~~l~   84 (347)
                      .|+..|.+.+..  .++++++|+.|-+.|+|++..   .+..  .|+      ++    ...|++++|..++    ..||
T Consensus       176 ~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G----~~La  251 (524)
T KOG0273|consen  176 RHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDG----TLLA  251 (524)
T ss_pred             cCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCC----CeEE
Confidence            488888888865  356899999999999999642   1111  111      22    2579999998744    4799


Q ss_pred             EccCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeecc
Q 036314           85 TASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRK  164 (347)
Q Consensus        85 s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~  164 (347)
                      +|+.||.+|+|+.+.+          .+.+|.-|++||.++.|+.+|++|++++.|+++.+||..++             
T Consensus       252 tG~~~G~~riw~~~G~----------l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g-------------  308 (524)
T KOG0273|consen  252 TGSEDGEARIWNKDGN----------LISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTG-------------  308 (524)
T ss_pred             EeecCcEEEEEecCch----------hhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCc-------------
Confidence            9999999999998764          23467789999999999999999999999999999997653             


Q ss_pred             CCCccccccccccccccccCCccceEEEEeCCCCeEEEEecCCcEEEEECCCCceeeeeee-CeeeEEEEeeCCCCcEEE
Q 036314          165 GNNQVEEPQLEGEAISTLVGHTQCVSSVVWPQQETIYSASWDHSVRTWDVEMGKDLSDIFC-GKALNCIDIGGEGSALIA  243 (347)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~la  243 (347)
                                  +..+.+..|..+-..+.|-+...+++.+.|+.|+|+-+-...++.++.. +.++.++.+.|. +.+|+
T Consensus       309 ------------~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~t-g~LLa  375 (524)
T KOG0273|consen  309 ------------TVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPT-GSLLA  375 (524)
T ss_pred             ------------eEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCC-CceEE
Confidence                        2233445566665667887778899999999999999877777877765 457999999654 56899


Q ss_pred             EecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCC--------eEEEEEeCCCcEEEEEcCCCccceeecCCC
Q 036314          244 AGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSW--------FHLISASYDGKVMLWDLRTAWPLSVIDSHK  315 (347)
Q Consensus       244 ~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~--------~~l~s~s~D~~i~lwd~~~~~~~~~~~~h~  315 (347)
                      ++++|++++||.+...   .....+.+|...|..+.|+|.++        ..|++++.|++|++||+..+.++.+|..|+
T Consensus       376 S~SdD~TlkiWs~~~~---~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~  452 (524)
T KOG0273|consen  376 SCSDDGTLKIWSMGQS---NSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQ  452 (524)
T ss_pred             EecCCCeeEeeecCCC---cchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCC
Confidence            9999999999997643   23567789999999999999763        469999999999999999999999999999


Q ss_pred             CeEEEEeecC-CCEEEEccCCceEEEeecc
Q 036314          316 DKVLCADWWR-GDSVISGGVDSKLCVSSGV  344 (347)
Q Consensus       316 ~~v~~~~~~~-~~~l~s~s~D~~v~vw~~~  344 (347)
                      ++|++++|+| |+++|+|+.||.|.+|+..
T Consensus       453 ~pVysvafS~~g~ylAsGs~dg~V~iws~~  482 (524)
T KOG0273|consen  453 EPVYSVAFSPNGRYLASGSLDGCVHIWSTK  482 (524)
T ss_pred             CceEEEEecCCCcEEEecCCCCeeEecccc
Confidence            9999999985 8899999999999999976

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3.1e-36  Score=237.66  Aligned_cols=281  Identities=23%  Similarity=0.346  Sum_probs=226.5

Q ss_pred             CCCCCcCCceeeccCC-CCCEEEEEecCCeEEEEcC-CCeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEE
Q 036314           18 EEPSLHDDWVSAVDGS-NPGFILTGCYDNLGRVWKA-GGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLW   95 (347)
Q Consensus        18 ~~~~~h~~~v~~~~~~-~~~~l~sg~~d~~i~iw~~-~~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~w   95 (347)
                      ..+..|.++|.+++|. +|+|.+|+|.|.++|+||+ .|.+++++.||..+|..++.+.++.    .+++|+.|..+.+|
T Consensus        11 ~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dns----kf~s~GgDk~v~vw   86 (307)
T KOG0316|consen   11 SILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNS----KFASCGGDKAVQVW   86 (307)
T ss_pred             eeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeecccccccc----ccccCCCCceEEEE
Confidence            3567899999999998 7889999999999999996 6899999999999999998877443    58999999999999


Q ss_pred             eccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCcccccccc
Q 036314           96 KFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLE  175 (347)
Q Consensus        96 d~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (347)
                      |+++++         ..+.|++|.+.|+.++|+.+...++|||.|.++++||.++...                      
T Consensus        87 DV~TGk---------v~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~----------------------  135 (307)
T KOG0316|consen   87 DVNTGK---------VDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSF----------------------  135 (307)
T ss_pred             EcccCe---------eeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCC----------------------
Confidence            999886         4567899999999999999999999999999999999876432                      


Q ss_pred             ccccccccCCccceEEEEeCCCCeEEEEecCCcEEEEECCCCceeeeeeeCeeeEEEEeeCCCCcEEEEecCCCcEEEEe
Q 036314          176 GEAISTLVGHTQCVSSVVWPQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEGSALIAAGGSDPILRIWD  255 (347)
Q Consensus       176 ~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd  255 (347)
                       ++++.+....+.|.++.. .+..|+.||.||+++.||++.|..... ..+.+++|+.++++ ++..++++.|+++++.|
T Consensus       136 -ePiQildea~D~V~Si~v-~~heIvaGS~DGtvRtydiR~G~l~sD-y~g~pit~vs~s~d-~nc~La~~l~stlrLlD  211 (307)
T KOG0316|consen  136 -EPIQILDEAKDGVSSIDV-AEHEIVAGSVDGTVRTYDIRKGTLSSD-YFGHPITSVSFSKD-GNCSLASSLDSTLRLLD  211 (307)
T ss_pred             -CccchhhhhcCceeEEEe-cccEEEeeccCCcEEEEEeecceeehh-hcCCcceeEEecCC-CCEEEEeeccceeeecc
Confidence             345566666677887765 346788999999999999999875443 34678999999765 55677788999999999


Q ss_pred             CCCCCCCCCeEEecCCCCC--eeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecCCCCe-EEEEeecCC-CEEEE
Q 036314          256 PRKPGTSAPVFQFSSHNSW--ISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDK-VLCADWWRG-DSVIS  331 (347)
Q Consensus       256 ~~~~~~~~~~~~~~~h~~~--v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h~~~-v~~~~~~~~-~~l~s  331 (347)
                      -..   .+.+..+.||.+.  -..+.++... .++++||+||.|.+||+..+..+..+..|... |..+.++|. ..|++
T Consensus       212 k~t---GklL~sYkGhkn~eykldc~l~qsd-thV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~  287 (307)
T KOG0316|consen  212 KET---GKLLKSYKGHKNMEYKLDCCLNQSD-THVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFIT  287 (307)
T ss_pred             cch---hHHHHHhcccccceeeeeeeecccc-eeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeE
Confidence            653   3346778888763  4455565443 57999999999999999998888888877766 688999873 34555


Q ss_pred             ccCCceEEEee
Q 036314          332 GGVDSKLCVSS  342 (347)
Q Consensus       332 ~s~D~~v~vw~  342 (347)
                      +. ++.+..|-
T Consensus       288 A~-~~~~~~~~  297 (307)
T KOG0316|consen  288 AT-GHGDLFWY  297 (307)
T ss_pred             ec-CCceecee
Confidence            44 34445554

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=1.3e-35  Score=273.88  Aligned_cols=281  Identities=26%  Similarity=0.394  Sum_probs=232.6

Q ss_pred             CcCCceeeccCC-CCCEEEEEecCCeEEEEcCC-Ce--EEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEec
Q 036314           22 LHDDWVSAVDGS-NPGFILTGCYDNLGRVWKAG-GV--CTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKF   97 (347)
Q Consensus        22 ~h~~~v~~~~~~-~~~~l~sg~~d~~i~iw~~~-~~--~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~   97 (347)
                      .|...|++++|+ ++.+|++++.|+++++|+.. +.  ..+.+.+|...|..++|++++    ..+++++.|++||+||+
T Consensus       157 ~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~----~~l~s~s~D~tiriwd~  232 (456)
T KOG0266|consen  157 HECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDG----SYLLSGSDDKTLRIWDL  232 (456)
T ss_pred             cccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCC----cEEEEecCCceEEEeec
Confidence            347889999998 56799999999999999973 34  566778999999999999954    47999999999999998


Q ss_pred             cccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCcccccccccc
Q 036314           98 DAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGE  177 (347)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (347)
                      ...        ...++++.+|...|++++|+|+|++++||+.|++|+|||++++                         +
T Consensus       233 ~~~--------~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~-------------------------~  279 (456)
T KOG0266|consen  233 KDD--------GRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTG-------------------------E  279 (456)
T ss_pred             cCC--------CeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCC-------------------------e
Confidence            322        2467789999999999999999999999999999999999753                         4


Q ss_pred             ccccccCCccceEEEEeC-CCCeEEEEecCCcEEEEECCCCc--eeeeeeeC--e-eeEEEEeeCCCCcEEEEecCCCcE
Q 036314          178 AISTLVGHTQCVSSVVWP-QQETIYSASWDHSVRTWDVEMGK--DLSDIFCG--K-ALNCIDIGGEGSALIAAGGSDPIL  251 (347)
Q Consensus       178 ~~~~~~~h~~~v~~~~~~-~~~~l~s~s~dg~v~vwd~~~~~--~~~~~~~~--~-~~~~~~~~~~~~~~la~~~~d~~i  251 (347)
                      +.+.+.+|.+.|.+++|+ ++..|++++.|+.|++||+.++.  +...+...  . +++++.++++ +.+++++..|+.+
T Consensus       280 ~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~-~~~ll~~~~d~~~  358 (456)
T KOG0266|consen  280 CVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPN-GKYLLSASLDRTL  358 (456)
T ss_pred             EEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCC-CcEEEEecCCCeE
Confidence            577889999999999995 77889999999999999999988  33444322  2 5788899765 4577889999999


Q ss_pred             EEEeCCCCCCCCCeEEecCCCCCe---eEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecCC-CCeEEEEeecC-C
Q 036314          252 RIWDPRKPGTSAPVFQFSSHNSWI---SACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSH-KDKVLCADWWR-G  326 (347)
Q Consensus       252 ~iwd~~~~~~~~~~~~~~~h~~~v---~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h-~~~v~~~~~~~-~  326 (347)
                      ++||++..   .....+.+|...+   .+...++.+ .++++|+.|+.|.+||+.++..+..+++| ...+..+.|++ .
T Consensus       359 ~~w~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~  434 (456)
T KOG0266|consen  359 KLWDLRSG---KSVGTYTGHSNLVRCIFSPTLSTGG-KLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTE  434 (456)
T ss_pred             EEEEccCC---cceeeecccCCcceeEecccccCCC-CeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCc
Confidence            99999853   2356677787753   223334555 46999999999999999998889999999 88999999986 5


Q ss_pred             CEEEEcc--CCceEEEeecc
Q 036314          327 DSVISGG--VDSKLCVSSGV  344 (347)
Q Consensus       327 ~~l~s~s--~D~~v~vw~~~  344 (347)
                      +.+++++  .|+.+++|.-.
T Consensus       435 ~~~~s~s~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  435 NLIASSSFEGDGLIRLWKYD  454 (456)
T ss_pred             CeeeecCcCCCceEEEecCC
Confidence            5788888  79999999753

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=9.9e-35  Score=286.48  Aligned_cols=283  Identities=16%  Similarity=0.248  Sum_probs=219.9

Q ss_pred             CCCcCCceeeccCC-CCCEEEEEecCCeEEEEcCCC-----e----EEEEeeccCCceEEEEEeecCCCceEEEEEccCC
Q 036314           20 PSLHDDWVSAVDGS-NPGFILTGCYDNLGRVWKAGG-----V----CTHILEGHCGAVSSVNIIKSDGLKYVTVATASKD   89 (347)
Q Consensus        20 ~~~h~~~v~~~~~~-~~~~l~sg~~d~~i~iw~~~~-----~----~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~D   89 (347)
                      ...|.+.|++++|+ ++.+|||||.|++|++|+...     .    ....+.+ ...|.++.|.+..+   ..|++++.|
T Consensus       479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~-~~~v~~l~~~~~~~---~~las~~~D  554 (793)
T PLN00181        479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELAS-RSKLSGICWNSYIK---SQVASSNFE  554 (793)
T ss_pred             ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecc-cCceeeEEeccCCC---CEEEEEeCC
Confidence            44699999999998 567999999999999998632     1    1223333 45789999987533   369999999


Q ss_pred             CcEEEEeccccccccCccccceeeeeeccccceEEEEEeC-CCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCc
Q 036314           90 QTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAET-SGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQ  168 (347)
Q Consensus        90 g~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~-~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~  168 (347)
                      |+|++||+.+++         .+..+.+|.+.|.+++|+| ++.+|+||+.|++|++||+.+..                
T Consensus       555 g~v~lWd~~~~~---------~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~----------------  609 (793)
T PLN00181        555 GVVQVWDVARSQ---------LVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGV----------------  609 (793)
T ss_pred             CeEEEEECCCCe---------EEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCc----------------
Confidence            999999987653         4456789999999999996 78999999999999999987532                


Q ss_pred             cccccccccccccccCCccceEEEEe-C-CCCeEEEEecCCcEEEEECCCCc-eeeeee-eCeeeEEEEeeCCCCcEEEE
Q 036314          169 VEEPQLEGEAISTLVGHTQCVSSVVW-P-QQETIYSASWDHSVRTWDVEMGK-DLSDIF-CGKALNCIDIGGEGSALIAA  244 (347)
Q Consensus       169 ~~~~~~~~~~~~~~~~h~~~v~~~~~-~-~~~~l~s~s~dg~v~vwd~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~la~  244 (347)
                               .+..+..+ ..+.++.| + ++..|++|+.|+.|++||++.+. .+..+. +...+.++.|.  ++..+++
T Consensus       610 ---------~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~--~~~~lvs  677 (793)
T PLN00181        610 ---------SIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV--DSSTLVS  677 (793)
T ss_pred             ---------EEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe--CCCEEEE
Confidence                     12233333 46778887 3 57889999999999999998765 333343 23467888885  3457889


Q ss_pred             ecCCCcEEEEeCCCCC---CCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCcccee-----------
Q 036314          245 GGSDPILRIWDPRKPG---TSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSV-----------  310 (347)
Q Consensus       245 ~~~d~~i~iwd~~~~~---~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~-----------  310 (347)
                      ++.|++|++||++...   ...++..+.+|...+..+.|+|++. +|++|+.|++|++|+.....++..           
T Consensus       678 ~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~-~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~  756 (793)
T PLN00181        678 SSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDG-YIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSG  756 (793)
T ss_pred             EECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCC-EEEEEeCCCEEEEEECCCCCceEEEecccCCcccc
Confidence            9999999999987431   1235678899999999999999986 699999999999999876543322           


Q ss_pred             --ecCCCCeEEEEeecC-CCEEEEccCCceEEEeecc
Q 036314          311 --IDSHKDKVLCADWWR-GDSVISGGVDSKLCVSSGV  344 (347)
Q Consensus       311 --~~~h~~~v~~~~~~~-~~~l~s~s~D~~v~vw~~~  344 (347)
                        ...|...|.+++|++ +..|++|+.||+|+||+-+
T Consensus       757 ~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~~  793 (793)
T PLN00181        757 LEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEMV  793 (793)
T ss_pred             cccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEecC
Confidence              133566799999975 7789999999999999853

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=3e-35  Score=239.62  Aligned_cols=280  Identities=22%  Similarity=0.408  Sum_probs=226.7

Q ss_pred             CCCcCCceeeccCCC-CCEEEEEecCCeEEEEcCCCeE--EEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEe
Q 036314           20 PSLHDDWVSAVDGSN-PGFILTGCYDNLGRVWKAGGVC--THILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWK   96 (347)
Q Consensus        20 ~~~h~~~v~~~~~~~-~~~l~sg~~d~~i~iw~~~~~~--~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd   96 (347)
                      ..+|++.|..+.|++ |.+|||||.|..|-+|+..+.|  ...+.+|.+.|..+.|.++++    .|++++.|.+|+.||
T Consensus        43 l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s----~i~S~gtDk~v~~wD  118 (338)
T KOG0265|consen   43 LPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGS----HILSCGTDKTVRGWD  118 (338)
T ss_pred             cCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCC----EEEEecCCceEEEEe
Confidence            448999999999985 5699999999999999976654  467889999999999998554    799999999999999


Q ss_pred             ccccccccCccccceeeeeeccccceEEEEEeCCC-CEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCcccccccc
Q 036314           97 FDAEELVNHPKKIRSFKILRGHKASVHSIAAETSG-NMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLE  175 (347)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~-~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (347)
                      +++++         ..+.+++|.+-|+++.-..-| .++.||+.|+++||||++..++                      
T Consensus       119 ~~tG~---------~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~----------------------  167 (338)
T KOG0265|consen  119 AETGK---------RIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEA----------------------  167 (338)
T ss_pred             cccce---------eeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccch----------------------
Confidence            99885         455688999999999855556 4667999999999999986432                      


Q ss_pred             ccccccccCCccceEEEEeC-CCCeEEEEecCCcEEEEECCCCceeeeeeeC-eeeEEEEeeCCCCcEEEEecCCCcEEE
Q 036314          176 GEAISTLVGHTQCVSSVVWP-QQETIYSASWDHSVRTWDVEMGKDLSDIFCG-KALNCIDIGGEGSALIAAGGSDPILRI  253 (347)
Q Consensus       176 ~~~~~~~~~h~~~v~~~~~~-~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~la~~~~d~~i~i  253 (347)
                         ++++.. .-.+.++.|. .+..+++|+-|+.|++||++.+.....+..+ .++..+..++.+ ..+.+-+-|+++++
T Consensus       168 ---~~t~~~-kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~g-s~llsnsMd~tvrv  242 (338)
T KOG0265|consen  168 ---IKTFEN-KYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYG-SFLLSNSMDNTVRV  242 (338)
T ss_pred             ---hhcccc-ceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCC-CccccccccceEEE
Confidence               222211 2246788885 5678999999999999999988888777654 467888887655 46677888999999


Q ss_pred             EeCCCCCCCC-CeEEecCCCC----CeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecCCCCeEEEEeecCC-C
Q 036314          254 WDPRKPGTSA-PVFQFSSHNS----WISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKVLCADWWRG-D  327 (347)
Q Consensus       254 wd~~~~~~~~-~~~~~~~h~~----~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~-~  327 (347)
                      ||.+.-.... .+..+.+|.-    ....++|+|++. .+.+|+.|..+.+||......+..+.||.+.|.+++|+|. .
T Consensus       243 wd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~-~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~  321 (338)
T KOG0265|consen  243 WDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGT-KITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEP  321 (338)
T ss_pred             EEecccCCCCceEEEeecchhhhhhhcceeeccCCCC-ccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCc
Confidence            9998532222 2556666643    356789999985 5899999999999999988889999999999999999974 4


Q ss_pred             EEEEccCCceEEE
Q 036314          328 SVISGGVDSKLCV  340 (347)
Q Consensus       328 ~l~s~s~D~~v~v  340 (347)
                      .|.+++.|++|.+
T Consensus       322 iils~~sdk~i~l  334 (338)
T KOG0265|consen  322 IILSCSSDKTIYL  334 (338)
T ss_pred             EEEEeccCceeEe
Confidence            7999999999975

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.9e-35  Score=235.55  Aligned_cols=261  Identities=26%  Similarity=0.392  Sum_probs=212.0

Q ss_pred             CCeEEEEcCC-CeEEEEee--ccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeeeecccc
Q 036314           44 DNLGRVWKAG-GVCTHILE--GHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKA  120 (347)
Q Consensus        44 d~~i~iw~~~-~~~~~~l~--~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~  120 (347)
                      .|++.|-+.. ++-+..+.  .-++.+..++|++...   ..+++++.||++|+||+..        +..++..++.|+.
T Consensus        37 ~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e---~~~~~a~GDGSLrl~d~~~--------~s~Pi~~~kEH~~  105 (311)
T KOG0277|consen   37 NGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHE---NQVIAASGDGSLRLFDLTM--------PSKPIHKFKEHKR  105 (311)
T ss_pred             CceEEEEecCCCCCeEEEEeeecccceeEeeecCCCc---ceEEEEecCceEEEeccCC--------CCcchhHHHhhhh
Confidence            4566676653 22222222  2346789999998543   3689999999999999642        2346778889999


Q ss_pred             ceEEEEEeCC-CCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEeC--CC
Q 036314          121 SVHSIAAETS-GNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWP--QQ  197 (347)
Q Consensus       121 ~V~~v~~s~~-~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~  197 (347)
                      .|.++.+++. +..++++|+|+|||+|+...+                         ..++++.||..+|....|+  ..
T Consensus       106 EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~-------------------------~Sv~Tf~gh~~~Iy~a~~sp~~~  160 (311)
T KOG0277|consen  106 EVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRP-------------------------NSVQTFNGHNSCIYQAAFSPHIP  160 (311)
T ss_pred             heEEeccccccceeEEeeccCCceEeecCCCC-------------------------cceEeecCCccEEEEEecCCCCC
Confidence            9999999875 457788899999999987643                         2367899999999999984  46


Q ss_pred             CeEEEEecCCcEEEEECCCCceeeeeeeCe-eeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCee
Q 036314          198 ETIYSASWDHSVRTWDVEMGKDLSDIFCGK-ALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWIS  276 (347)
Q Consensus       198 ~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~  276 (347)
                      +.++++|.|+++++||++..-....+..+. ++.|.+++-.+.+++++|+.|+.|+.||+|+-.  .|++.+.+|.-.|+
T Consensus       161 nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r--~pl~eL~gh~~AVR  238 (311)
T KOG0277|consen  161 NLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLR--TPLFELNGHGLAVR  238 (311)
T ss_pred             CeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhcc--ccceeecCCceEEE
Confidence            789999999999999998754444455444 788889987788899999999999999999754  35889999999999


Q ss_pred             EEEeCCCCCeEEEEEeCCCcEEEEEcCCCcc-ceeecCCCCeEEEEeecC--CCEEEEccCCceEEEee
Q 036314          277 ACKWHNKSWFHLISASYDGKVMLWDLRTAWP-LSVIDSHKDKVLCADWWR--GDSVISGGVDSKLCVSS  342 (347)
Q Consensus       277 ~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~-~~~~~~h~~~v~~~~~~~--~~~l~s~s~D~~v~vw~  342 (347)
                      .++|||....+|||+++|=+++|||...+.. +.+...|++-|.+++|++  +.++|+++.|+.+.||.
T Consensus       239 kvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~  307 (311)
T KOG0277|consen  239 KVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWN  307 (311)
T ss_pred             EEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeec
Confidence            9999999888899999999999999986544 456678999999999984  67999999999999997

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=100.00  E-value=4.1e-36  Score=238.93  Aligned_cols=286  Identities=21%  Similarity=0.329  Sum_probs=234.7

Q ss_pred             cCCCCCcCCceeeccCC---CCC-EEEEEecCCeEEEEcC-CCeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCc
Q 036314           17 EEEPSLHDDWVSAVDGS---NPG-FILTGCYDNLGRVWKA-GGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQT   91 (347)
Q Consensus        17 ~~~~~~h~~~v~~~~~~---~~~-~l~sg~~d~~i~iw~~-~~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~   91 (347)
                      ...-.+|+.+|..++|+   +++ +|+++|.|+.-++-+- .|..+-+|.||.+.|.+.....    +....|+++.|-+
T Consensus         7 pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~----na~~aasaaadft   82 (334)
T KOG0278|consen    7 PLTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNK----NATRAASAAADFT   82 (334)
T ss_pred             ceEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCc----hhhhhhhhcccch
Confidence            33456899999999987   344 7899999999888875 4788999999999999877654    2345789999999


Q ss_pred             EEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCcccc
Q 036314           92 LRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEE  171 (347)
Q Consensus        92 v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~  171 (347)
                      .++||.-++..+.         .| .|+.-|.+++|+.|.+.|++|+.+..+||||++.++.                  
T Consensus        83 akvw~a~tgdelh---------sf-~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~A------------------  134 (334)
T KOG0278|consen   83 AKVWDAVTGDELH---------SF-EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKA------------------  134 (334)
T ss_pred             hhhhhhhhhhhhh---------hh-hhhheeeeEEecccchhhhccchHHHhhhhhccCCCC------------------
Confidence            9999976664321         22 4888899999999999999999999999999986543                  


Q ss_pred             ccccccccccccCCccceEEEEe-CCCCeEEEEecCCcEEEEECCCCceeeeeeeCeeeEEEEeeCCCCcEEEEecCCCc
Q 036314          172 PQLEGEAISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEGSALIAAGGSDPI  250 (347)
Q Consensus       172 ~~~~~~~~~~~~~h~~~v~~~~~-~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~d~~  250 (347)
                            +...+.+|+..|+.+.| ..++.++|.+.|++||+||.+++..+..++...+++.+.+++++ .++ +-.+.+.
T Consensus       135 ------pp~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG-~il-Tia~gss  206 (334)
T KOG0278|consen  135 ------PPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDG-RIL-TIAYGSS  206 (334)
T ss_pred             ------CchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCC-CEE-EEecCce
Confidence                  24467889999999988 46677889899999999999999999999999999999987654 344 4456789


Q ss_pred             EEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceee-cCCCCeEEEEeecC-CCE
Q 036314          251 LRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVI-DSHKDKVLCADWWR-GDS  328 (347)
Q Consensus       251 i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~-~~h~~~v~~~~~~~-~~~  328 (347)
                      |.+||...-+   .++.+.- ...|.+..++|+. ..+++|++|..++.||..+++.+..+ .+|.++|.||.|+| |..
T Consensus       207 V~Fwdaksf~---~lKs~k~-P~nV~SASL~P~k-~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~  281 (334)
T KOG0278|consen  207 VKFWDAKSFG---LLKSYKM-PCNVESASLHPKK-EFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGEL  281 (334)
T ss_pred             eEEecccccc---ceeeccC-ccccccccccCCC-ceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCce
Confidence            9999987532   2333322 2357888899998 46999999999999999999988886 89999999999986 668


Q ss_pred             EEEccCCceEEEeecccCC
Q 036314          329 VISGGVDSKLCVSSGVSIQ  347 (347)
Q Consensus       329 l~s~s~D~~v~vw~~~~~~  347 (347)
                      .|+||.||+|+||+++..|
T Consensus       282 yAsGSEDGTirlWQt~~~~  300 (334)
T KOG0278|consen  282 YASGSEDGTIRLWQTTPGK  300 (334)
T ss_pred             eeccCCCceEEEEEecCCC
Confidence            9999999999999987543

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=4.9e-35  Score=265.60  Aligned_cols=238  Identities=26%  Similarity=0.430  Sum_probs=204.4

Q ss_pred             CCceeeccCCCCC-EEEEEecCCeEEEEcCCC--------------------------------eEEEEeeccCCceEEE
Q 036314           24 DDWVSAVDGSNPG-FILTGCYDNLGRVWKAGG--------------------------------VCTHILEGHCGAVSSV   70 (347)
Q Consensus        24 ~~~v~~~~~~~~~-~l~sg~~d~~i~iw~~~~--------------------------------~~~~~l~~h~~~V~~v   70 (347)
                      ...++|+.|+++. .||-|-.|..|++|....                                ...+.+.||+++|...
T Consensus       378 ~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~  457 (707)
T KOG0263|consen  378 YQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGC  457 (707)
T ss_pred             CCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeee
Confidence            3568899999764 788888899999995431                                1235699999999999


Q ss_pred             EEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCC
Q 036314           71 NIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTND  150 (347)
Q Consensus        71 ~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~  150 (347)
                      .|+|+.    .+|+++|+|++||+|.+.+..         ++...+||..||..+.|+|-|-++||+|.|++.++|....
T Consensus       458 sFsPd~----rfLlScSED~svRLWsl~t~s---------~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~  524 (707)
T KOG0263|consen  458 SFSPDR----RFLLSCSEDSSVRLWSLDTWS---------CLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDH  524 (707)
T ss_pred             eecccc----cceeeccCCcceeeeecccce---------eEEEecCCCcceeeEEecCCceEEEecCCCceeeeeeccc
Confidence            999954    479999999999999998754         4566789999999999999999999999999999998754


Q ss_pred             CCCCCccceeeeccCCCccccccccccccccccCCccceEEEEe-CCCCeEEEEecCCcEEEEECCCCceeeeeeeC-ee
Q 036314          151 SDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFCG-KA  228 (347)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~-~~  228 (347)
                      .                         .+++.+.+|-..|.|+.| |+..++++||.|++||+||+.+|..++-+..+ .+
T Consensus       525 ~-------------------------~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~  579 (707)
T KOG0263|consen  525 N-------------------------KPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGP  579 (707)
T ss_pred             C-------------------------CchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCc
Confidence            2                         457788999999999988 67889999999999999999999988776543 47


Q ss_pred             eEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCC
Q 036314          229 LNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRT  304 (347)
Q Consensus       229 ~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~  304 (347)
                      +.+++++| .+..+|+|+.|+.|++||+...   .++.++.+|++.|.++.|+.+|. .||+|+.|.+|++||+.+
T Consensus       580 V~al~~Sp-~Gr~LaSg~ed~~I~iWDl~~~---~~v~~l~~Ht~ti~SlsFS~dg~-vLasgg~DnsV~lWD~~~  650 (707)
T KOG0263|consen  580 VTALAFSP-CGRYLASGDEDGLIKIWDLANG---SLVKQLKGHTGTIYSLSFSRDGN-VLASGGADNSVRLWDLTK  650 (707)
T ss_pred             eEEEEEcC-CCceEeecccCCcEEEEEcCCC---cchhhhhcccCceeEEEEecCCC-EEEecCCCCeEEEEEchh
Confidence            89999977 4678999999999999999853   34678889999999999999995 699999999999999875

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=1.5e-33  Score=244.36  Aligned_cols=280  Identities=27%  Similarity=0.473  Sum_probs=230.3

Q ss_pred             CCCcCCceeeccCCC-CCEEEEEecCCeEEEEcCC-CeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEec
Q 036314           20 PSLHDDWVSAVDGSN-PGFILTGCYDNLGRVWKAG-GVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKF   97 (347)
Q Consensus        20 ~~~h~~~v~~~~~~~-~~~l~sg~~d~~i~iw~~~-~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~   97 (347)
                      ..+|++.|+++++++ +++|++++.||.+++|+.. +.....+.+|...+..+.|.+.+    ..|++++.||.|++|++
T Consensus         5 ~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~l~~~~~~~~i~i~~~   80 (289)
T cd00200           5 LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADG----TYLASGSSDKTIRLWDL   80 (289)
T ss_pred             hcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCC----CEEEEEcCCCeEEEEEc
Confidence            448999999999985 5799999999999999975 45667788999999999998854    36899999999999999


Q ss_pred             cccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCcccccccccc
Q 036314           98 DAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGE  177 (347)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (347)
                      ..++         ....+..|...+.++.|+++++++++++.|+.|++|++.+.                         .
T Consensus        81 ~~~~---------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-------------------------~  126 (289)
T cd00200          81 ETGE---------CVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETG-------------------------K  126 (289)
T ss_pred             Cccc---------ceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCc-------------------------E
Confidence            7643         34456789989999999999999999999999999998742                         1


Q ss_pred             ccccccCCccceEEEEeCC-CCeEEEEecCCcEEEEECCCCceeeeeeeCe-eeEEEEeeCCCCcEEEEecCCCcEEEEe
Q 036314          178 AISTLVGHTQCVSSVVWPQ-QETIYSASWDHSVRTWDVEMGKDLSDIFCGK-ALNCIDIGGEGSALIAAGGSDPILRIWD  255 (347)
Q Consensus       178 ~~~~~~~h~~~v~~~~~~~-~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~la~~~~d~~i~iwd  255 (347)
                      ....+..|...+.++.|.+ +..+++++.|+.+++||++.++.+..+.... .+.++.+.+++ ..+++++.|+.+++||
T Consensus       127 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~~~~i~i~d  205 (289)
T cd00200         127 CLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDG-EKLLSSSSDGTIKLWD  205 (289)
T ss_pred             EEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCc-CEEEEecCCCcEEEEE
Confidence            2334556888899999854 5667777779999999998877766665443 67889997655 4566777799999999


Q ss_pred             CCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecCCCCeEEEEeecC-CCEEEEccC
Q 036314          256 PRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKVLCADWWR-GDSVISGGV  334 (347)
Q Consensus       256 ~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~l~s~s~  334 (347)
                      ++..   .....+..|...+.++.|+|++ .++++++.|+.|++||+++++....+.+|...+.++.|++ +..|++++.
T Consensus       206 ~~~~---~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  281 (289)
T cd00200         206 LSTG---KCLGTLRGHENGVNSVAFSPDG-YLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSA  281 (289)
T ss_pred             CCCC---ceecchhhcCCceEEEEEcCCC-cEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecC
Confidence            8752   2355666788899999999985 5688888899999999998888888889999999999986 578999999


Q ss_pred             CceEEEee
Q 036314          335 DSKLCVSS  342 (347)
Q Consensus       335 D~~v~vw~  342 (347)
                      |+.|++|+
T Consensus       282 d~~i~iw~  289 (289)
T cd00200         282 DGTIRIWD  289 (289)
T ss_pred             CCeEEecC
Confidence            99999996

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3e-35  Score=245.15  Aligned_cols=257  Identities=26%  Similarity=0.385  Sum_probs=217.2

Q ss_pred             EEEEcCCCeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeeeeccccceEEEE
Q 036314           47 GRVWKAGGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIA  126 (347)
Q Consensus        47 i~iw~~~~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~  126 (347)
                      -..|=++....+.+.+|..+|+.+-|+|.    ...++++++|++|++||+.++++         ...++||++.|.+++
T Consensus        91 ~~~wipRp~l~~~l~g~r~~vt~v~~hp~----~~~v~~as~d~tikv~D~~tg~~---------e~~LrGHt~sv~di~  157 (406)
T KOG0295|consen   91 PALWIPRPNLVQKLAGHRSSVTRVIFHPS----EALVVSASEDATIKVFDTETGEL---------ERSLRGHTDSVFDIS  157 (406)
T ss_pred             hhhcCCCCCchhhhhccccceeeeeeccC----ceEEEEecCCceEEEEEccchhh---------hhhhhccccceeEEE
Confidence            33454444566778899999999999984    34789999999999999998875         346889999999999


Q ss_pred             EeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEe-CCCCeEEEEec
Q 036314          127 AETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW-PQQETIYSASW  205 (347)
Q Consensus       127 ~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~l~s~s~  205 (347)
                      |+..|++++++|.|-.+++||.+..                        ..+++.+.+|...|.+++| |.+.+++|++.
T Consensus       158 ~~a~Gk~l~tcSsDl~~~LWd~~~~------------------------~~c~ks~~gh~h~vS~V~f~P~gd~ilS~sr  213 (406)
T KOG0295|consen  158 FDASGKYLATCSSDLSAKLWDFDTF------------------------FRCIKSLIGHEHGVSSVFFLPLGDHILSCSR  213 (406)
T ss_pred             EecCccEEEecCCccchhheeHHHH------------------------HHHHHHhcCcccceeeEEEEecCCeeeeccc
Confidence            9999999999999999999997642                        2467788999999999986 88999999999


Q ss_pred             CCcEEEEECCCCceeeeeeeCee-eEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCC
Q 036314          206 DHSVRTWDVEMGKDLSDIFCGKA-LNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKS  284 (347)
Q Consensus       206 dg~v~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~  284 (347)
                      |.+|+.||+.++.++.++..+.. +..+... .++.++|+++.|.++++|-....   .....+..|.-.|.+++|.|..
T Consensus       214 D~tik~We~~tg~cv~t~~~h~ewvr~v~v~-~DGti~As~s~dqtl~vW~~~t~---~~k~~lR~hEh~vEci~wap~~  289 (406)
T KOG0295|consen  214 DNTIKAWECDTGYCVKTFPGHSEWVRMVRVN-QDGTIIASCSNDQTLRVWVVATK---QCKAELREHEHPVECIAWAPES  289 (406)
T ss_pred             ccceeEEecccceeEEeccCchHhEEEEEec-CCeeEEEecCCCceEEEEEeccc---hhhhhhhccccceEEEEecccc
Confidence            99999999999999998876554 4555554 45679999999999999987642   1234566788889999988752


Q ss_pred             --------------CeEEEEEeCCCcEEEEEcCCCccceeecCCCCeEEEEeecC-CCEEEEccCCceEEEeecc
Q 036314          285 --------------WFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKVLCADWWR-GDSVISGGVDSKLCVSSGV  344 (347)
Q Consensus       285 --------------~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~l~s~s~D~~v~vw~~~  344 (347)
                                    ...+.++|.|++||+||+.++.++.++.+|.+-|.+++|+| |++|+|+..|++++||+..
T Consensus       290 ~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~  364 (406)
T KOG0295|consen  290 SYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLK  364 (406)
T ss_pred             cCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEec
Confidence                          24799999999999999999999999999999999999987 6789999999999999975

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=1.3e-33  Score=235.48  Aligned_cols=280  Identities=21%  Similarity=0.275  Sum_probs=221.9

Q ss_pred             CCCcCCceeeccCC-CCCEEEEEecCCeEEEEcC-CCeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEec
Q 036314           20 PSLHDDWVSAVDGS-NPGFILTGCYDNLGRVWKA-GGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKF   97 (347)
Q Consensus        20 ~~~h~~~v~~~~~~-~~~~l~sg~~d~~i~iw~~-~~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~   97 (347)
                      ...|++.|-+++.. +.+++||||.|....+|+. .|.....+.+|.+.|+++.|+.    ++.+||||..+|.|++|+.
T Consensus        60 F~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~Fsh----dgtlLATGdmsG~v~v~~~  135 (399)
T KOG0296|consen   60 FDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSH----DGTLLATGDMSGKVLVFKV  135 (399)
T ss_pred             hhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEcc----CceEEEecCCCccEEEEEc
Confidence            45799999999977 4569999999999999997 4677788999999999999998    4468999999999999999


Q ss_pred             cccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCcccccccccc
Q 036314           98 DAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGE  177 (347)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (347)
                      .++..         ...+..--..+-=+.|+|-+..|+.|+.||.+-.|.+.+.                         .
T Consensus       136 stg~~---------~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~-------------------------~  181 (399)
T KOG0296|consen  136 STGGE---------QWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQ-------------------------A  181 (399)
T ss_pred             ccCce---------EEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCc-------------------------c
Confidence            87642         1122222334555788999999999999999999998753                         2


Q ss_pred             ccccccCCccceEEEEe-CCCCeEEEEecCCcEEEEECCCCceeeeeeeC--eeeEEE----------------------
Q 036314          178 AISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFCG--KALNCI----------------------  232 (347)
Q Consensus       178 ~~~~~~~h~~~v~~~~~-~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~--~~~~~~----------------------  232 (347)
                      ..+.+.||+.++.+=.| |+|++++++..||+|++||+++++++..+...  .+..|+                      
T Consensus       182 ~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~  261 (399)
T KOG0296|consen  182 LCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVN  261 (399)
T ss_pred             eeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEc
Confidence            35677889888776655 89999999999999999999999887665410  000000                      


Q ss_pred             ------EeeCC------------------------CCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCC
Q 036314          233 ------DIGGE------------------------GSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHN  282 (347)
Q Consensus       233 ------~~~~~------------------------~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~  282 (347)
                            ...-+                        .-.+.|.|+-||+|.|||+...   . .+..-.|...|..+.|-+
T Consensus       262 ~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~---~-~R~~c~he~~V~~l~w~~  337 (399)
T KOG0296|consen  262 NGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAS---T-LRHICEHEDGVTKLKWLN  337 (399)
T ss_pred             cccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccc---h-hheeccCCCceEEEEEcC
Confidence                  00000                        0124678899999999998742   2 233446999999999998


Q ss_pred             CCCeEEEEEeCCCcEEEEEcCCCccceeecCCCCeEEEEeecC-CCEEEEccCCceEEEeec
Q 036314          283 KSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKVLCADWWR-GDSVISGGVDSKLCVSSG  343 (347)
Q Consensus       283 ~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~l~s~s~D~~v~vw~~  343 (347)
                       .. +|++++.||.|+.||.|+|+.+.++.||+..|++++++| +++++|+|.|++.+|+.-
T Consensus       338 -t~-~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v  397 (399)
T KOG0296|consen  338 -TD-YLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEV  397 (399)
T ss_pred             -cc-hheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEec
Confidence             33 599999999999999999999999999999999999986 667999999999999754

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=1.2e-35  Score=246.34  Aligned_cols=244  Identities=25%  Similarity=0.453  Sum_probs=204.1

Q ss_pred             cCCCCCcCCceeeccCCCCCEEEEEecCCeEEEEcC-CCeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEE
Q 036314           17 EEEPSLHDDWVSAVDGSNPGFILTGCYDNLGRVWKA-GGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLW   95 (347)
Q Consensus        17 ~~~~~~h~~~v~~~~~~~~~~l~sg~~d~~i~iw~~-~~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~w   95 (347)
                      ...+.||++.|.|+.+. ...|+|||.|.|||+||. +|.++.++-+|...|..+.|+.      .+++|+|.|.++++|
T Consensus       230 ~~~L~GHtGSVLCLqyd-~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~n------g~mvtcSkDrsiaVW  302 (499)
T KOG0281|consen  230 LKILTGHTGSVLCLQYD-ERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSN------GYMVTCSKDRSIAVW  302 (499)
T ss_pred             HHhhhcCCCcEEeeecc-ceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEeC------CEEEEecCCceeEEE
Confidence            34578999999999985 459999999999999997 5788999999999999999975      278999999999999


Q ss_pred             eccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCcccccccc
Q 036314           96 KFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLE  175 (347)
Q Consensus        96 d~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (347)
                      |+.+..      ...+...+.||.++|+.|.|+  .++++|+|.|.||++|++.+                         
T Consensus       303 dm~sps------~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st-------------------------  349 (499)
T KOG0281|consen  303 DMASPT------DITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTST-------------------------  349 (499)
T ss_pred             eccCch------HHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccc-------------------------
Confidence            997643      233455788999999999986  46999999999999999875                         


Q ss_pred             ccccccccCCccceEEEEeCCCCeEEEEecCCcEEEEECCCCceeeeeeeCe-eeEEEEeeCCCCcEEEEecCCCcEEEE
Q 036314          176 GEAISTLVGHTQCVSSVVWPQQETIYSASWDHSVRTWDVEMGKDLSDIFCGK-ALNCIDIGGEGSALIAAGGSDPILRIW  254 (347)
Q Consensus       176 ~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~la~~~~d~~i~iw  254 (347)
                      +++++++.+|...|.|+.+ .++.++|||.|.+|++||++.|.+++.++.++ -+.|+-|.   ...+++|++||+|++|
T Consensus       350 ~efvRtl~gHkRGIAClQY-r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd---~krIVSGaYDGkikvW  425 (499)
T KOG0281|consen  350 CEFVRTLNGHKRGIACLQY-RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD---NKRIVSGAYDGKIKVW  425 (499)
T ss_pred             eeeehhhhcccccceehhc-cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec---CceeeeccccceEEEE
Confidence            3567889999988888875 56789999999999999999999998887655 47899883   3468899999999999


Q ss_pred             eCCCCCCCC------CeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCcc
Q 036314          255 DPRKPGTSA------PVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWP  307 (347)
Q Consensus       255 d~~~~~~~~------~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~  307 (347)
                      |+.....+.      .+.++..|.+.|..+.|..   ..+++++.|.+|.|||..++-+
T Consensus       426 dl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~---fqIvsssHddtILiWdFl~~~~  481 (499)
T KOG0281|consen  426 DLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDE---FQIISSSHDDTILIWDFLNGPP  481 (499)
T ss_pred             ecccccCCcccccchHHHhhhhccceeEEEeecc---eEEEeccCCCeEEEEEcCCCCc
Confidence            986543331      3456678999999999942   5799999999999999987644

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=6.4e-34  Score=231.86  Aligned_cols=246  Identities=23%  Similarity=0.421  Sum_probs=205.2

Q ss_pred             EEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEe
Q 036314           58 HILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSG  137 (347)
Q Consensus        58 ~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sg  137 (347)
                      ..+.||++.|..+.|+|++    ..+|||+.|..|-+|++...        .+..-++.+|+++|..+.|.+|++.++|+
T Consensus        41 m~l~gh~geI~~~~F~P~g----s~~aSgG~Dr~I~LWnv~gd--------ceN~~~lkgHsgAVM~l~~~~d~s~i~S~  108 (338)
T KOG0265|consen   41 MLLPGHKGEIYTIKFHPDG----SCFASGGSDRAIVLWNVYGD--------CENFWVLKGHSGAVMELHGMRDGSHILSC  108 (338)
T ss_pred             hhcCCCcceEEEEEECCCC----CeEeecCCcceEEEEecccc--------ccceeeeccccceeEeeeeccCCCEEEEe
Confidence            3578999999999999944    47999999999999997532        23445678999999999999999999999


Q ss_pred             eCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEeC--CCCeEEEEecCCcEEEEECC
Q 036314          138 SWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWP--QQETIYSASWDHSVRTWDVE  215 (347)
Q Consensus       138 s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~l~s~s~dg~v~vwd~~  215 (347)
                      |.|.+++.||++++                         ++++.+++|+.+|+++.-.  ..+++.|++.|++++|||++
T Consensus       109 gtDk~v~~wD~~tG-------------------------~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R  163 (338)
T KOG0265|consen  109 GTDKTVRGWDAETG-------------------------KRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIR  163 (338)
T ss_pred             cCCceEEEEecccc-------------------------eeeehhccccceeeecCccccCCeEEEecCCCceEEEEeec
Confidence            99999999999864                         5577889999999988722  23468899999999999999


Q ss_pred             CCceeeeeeeCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCC
Q 036314          216 MGKDLSDIFCGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDG  295 (347)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~  295 (347)
                      ...+++++....++.++.|.... ..+.+|+-|+.|++||+++..   ....+.||.+.|..+..+|+|.+ +.+=+.|.
T Consensus       164 ~k~~~~t~~~kyqltAv~f~d~s-~qv~sggIdn~ikvWd~r~~d---~~~~lsGh~DtIt~lsls~~gs~-llsnsMd~  238 (338)
T KOG0265|consen  164 KKEAIKTFENKYQLTAVGFKDTS-DQVISGGIDNDIKVWDLRKND---GLYTLSGHADTITGLSLSRYGSF-LLSNSMDN  238 (338)
T ss_pred             ccchhhccccceeEEEEEecccc-cceeeccccCceeeeccccCc---ceEEeecccCceeeEEeccCCCc-cccccccc
Confidence            98888888777788889986444 456788999999999998643   37889999999999999999974 99999999


Q ss_pred             cEEEEEcCCCc----cceeecCCC----CeEEEEeecC-CCEEEEccCCceEEEeeccc
Q 036314          296 KVMLWDLRTAW----PLSVIDSHK----DKVLCADWWR-GDSVISGGVDSKLCVSSGVS  345 (347)
Q Consensus       296 ~i~lwd~~~~~----~~~~~~~h~----~~v~~~~~~~-~~~l~s~s~D~~v~vw~~~~  345 (347)
                      ++++||++...    +++.+++|.    -..+.++|+| +..+.+|+.|+.+.+|+..+
T Consensus       239 tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~  297 (338)
T KOG0265|consen  239 TVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTS  297 (338)
T ss_pred             eEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeeccc
Confidence            99999998642    256677653    2356779986 56788999999999999865

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=1.5e-32  Score=220.95  Aligned_cols=249  Identities=24%  Similarity=0.397  Sum_probs=201.8

Q ss_pred             EEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeee-eccccceEEEEEeCCCCEE
Q 036314           56 CTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKIL-RGHKASVHSIAAETSGNMV  134 (347)
Q Consensus        56 ~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~-~~h~~~V~~v~~s~~~~~l  134 (347)
                      ..+.+.+|.+.+..++|+|..   +..|||++.|..||+|+...+.      ...+...+ .+|+..|+++||+|.|++|
T Consensus         6 ~~~~~~gh~~r~W~~awhp~~---g~ilAscg~Dk~vriw~~~~~~------s~~ck~vld~~hkrsVRsvAwsp~g~~L   76 (312)
T KOG0645|consen    6 LEQKLSGHKDRVWSVAWHPGK---GVILASCGTDKAVRIWSTSSGD------SWTCKTVLDDGHKRSVRSVAWSPHGRYL   76 (312)
T ss_pred             eEEeecCCCCcEEEEEeccCC---ceEEEeecCCceEEEEecCCCC------cEEEEEeccccchheeeeeeecCCCcEE
Confidence            456789999999999999953   3479999999999999987421      12333333 4799999999999999999


Q ss_pred             EEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEeC-CCCeEEEEecCCcEEEEE
Q 036314          135 CSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWP-QQETIYSASWDHSVRTWD  213 (347)
Q Consensus       135 ~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~l~s~s~dg~v~vwd  213 (347)
                      ++||.|+++.||.-.++                       +.+++.++.||...|.+++|+ +|.+||+++.|+.|-||.
T Consensus        77 a~aSFD~t~~Iw~k~~~-----------------------efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe  133 (312)
T KOG0645|consen   77 ASASFDATVVIWKKEDG-----------------------EFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWE  133 (312)
T ss_pred             EEeeccceEEEeecCCC-----------------------ceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEE
Confidence            99999999999965433                       235677899999999999995 788999999999999999


Q ss_pred             CCCCce---eeeeee-CeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEE
Q 036314          214 VEMGKD---LSDIFC-GKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLI  289 (347)
Q Consensus       214 ~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~  289 (347)
                      +..+..   +..++. ...+..+.++|.. .+|+++++|++|++|+-...+.....+++.+|.+.|.+++|+|.|. .|+
T Consensus       134 ~deddEfec~aVL~~HtqDVK~V~WHPt~-dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~-rl~  211 (312)
T KOG0645|consen  134 IDEDDEFECIAVLQEHTQDVKHVIWHPTE-DLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGS-RLV  211 (312)
T ss_pred             ecCCCcEEEEeeeccccccccEEEEcCCc-ceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCc-eEE
Confidence            874433   333333 3467888888754 4889999999999998654445566889999999999999999985 599


Q ss_pred             EEeCCCcEEEEEcCCCccceeecCCCCeEEEEeecCCCEEEEccCCceEEEeec
Q 036314          290 SASYDGKVMLWDLRTAWPLSVIDSHKDKVLCADWWRGDSVISGGVDSKLCVSSG  343 (347)
Q Consensus       290 s~s~D~~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~D~~v~vw~~  343 (347)
                      +++.|++++||-.....  .  ..|..+++.+.|. ...|||++.|+.|+|+.-
T Consensus       212 s~sdD~tv~Iw~~~~~~--~--~~~sr~~Y~v~W~-~~~IaS~ggD~~i~lf~~  260 (312)
T KOG0645|consen  212 SCSDDGTVSIWRLYTDL--S--GMHSRALYDVPWD-NGVIASGGGDDAIRLFKE  260 (312)
T ss_pred             EecCCcceEeeeeccCc--c--hhcccceEeeeec-ccceEeccCCCEEEEEEe
Confidence            99999999999876321  1  2477899999997 558999999999999864

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1.8e-34  Score=240.41  Aligned_cols=275  Identities=19%  Similarity=0.322  Sum_probs=221.5

Q ss_pred             CCCcCCceeeccCCCC--CEEEEEecCCeEEEEcCCC-eEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEe
Q 036314           20 PSLHDDWVSAVDGSNP--GFILTGCYDNLGRVWKAGG-VCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWK   96 (347)
Q Consensus        20 ~~~h~~~v~~~~~~~~--~~l~sg~~d~~i~iw~~~~-~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd   96 (347)
                      +.||.+.|.+++-.+.  ..++||+.||.|+|||+.. .|.+.|..|.+.|..|.+..      ..+++++.|.+||.|.
T Consensus        62 L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~------~~~~tvgdDKtvK~wk  135 (433)
T KOG0268|consen   62 LDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ------TSFFTVGDDKTVKQWK  135 (433)
T ss_pred             ccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc------cceEEecCCcceeeee
Confidence            4799999999996544  4799999999999999864 57889999999999999865      2478999999999999


Q ss_pred             ccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccc
Q 036314           97 FDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEG  176 (347)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (347)
                      ++..          +..++.+ +..+..+.-+..+..++|+|.+  |.|||.....                        
T Consensus       136 ~~~~----------p~~tilg-~s~~~gIdh~~~~~~FaTcGe~--i~IWD~~R~~------------------------  178 (433)
T KOG0268|consen  136 IDGP----------PLHTILG-KSVYLGIDHHRKNSVFATCGEQ--IDIWDEQRDN------------------------  178 (433)
T ss_pred             ccCC----------cceeeec-cccccccccccccccccccCce--eeecccccCC------------------------
Confidence            8752          3344433 4557777777778899999866  8899976432                        


Q ss_pred             cccccccCCccceEEEEeCCCC--eEEEEecCCcEEEEECCCCceeeeeeeCeeeEEEEeeCCCCcEEEEecCCCcEEEE
Q 036314          177 EAISTLVGHTQCVSSVVWPQQE--TIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEGSALIAAGGSDPILRIW  254 (347)
Q Consensus       177 ~~~~~~~~h~~~v~~~~~~~~~--~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~d~~i~iw  254 (347)
                       +++++.--.+.|.++.|++.+  .|++++.|++|.|||++++.++..+......+.++|.| ....|.+|.+|..++.|
T Consensus       179 -Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnP-eafnF~~a~ED~nlY~~  256 (433)
T KOG0268|consen  179 -PVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNP-EAFNFVAANEDHNLYTY  256 (433)
T ss_pred             -ccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeeccccceecCc-cccceeeccccccceeh
Confidence             233444444567778875433  58889999999999999999998887777788899988 55677889999999999


Q ss_pred             eCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecCCC---CeEEEEeec-CCCEEE
Q 036314          255 DPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHK---DKVLCADWW-RGDSVI  330 (347)
Q Consensus       255 d~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h~---~~v~~~~~~-~~~~l~  330 (347)
                      |++...  .++..+.+|.+.|.+++|||.|.. ++|||.|.+|+||..+.+..-.+  .|+   -.|.||.|+ +.++++
T Consensus       257 DmR~l~--~p~~v~~dhvsAV~dVdfsptG~E-fvsgsyDksIRIf~~~~~~SRdi--YhtkRMq~V~~Vk~S~Dskyi~  331 (433)
T KOG0268|consen  257 DMRNLS--RPLNVHKDHVSAVMDVDFSPTGQE-FVSGSYDKSIRIFPVNHGHSRDI--YHTKRMQHVFCVKYSMDSKYII  331 (433)
T ss_pred             hhhhhc--ccchhhcccceeEEEeccCCCcch-hccccccceEEEeecCCCcchhh--hhHhhhheeeEEEEeccccEEE
Confidence            999754  357778899999999999999965 99999999999999988754332  222   368999997 677899


Q ss_pred             EccCCceEEEeecc
Q 036314          331 SGGVDSKLCVSSGV  344 (347)
Q Consensus       331 s~s~D~~v~vw~~~  344 (347)
                      |||.|++|++|.+.
T Consensus       332 SGSdd~nvRlWka~  345 (433)
T KOG0268|consen  332 SGSDDGNVRLWKAK  345 (433)
T ss_pred             ecCCCcceeeeecc
Confidence            99999999999875

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=2.3e-32  Score=217.41  Aligned_cols=257  Identities=17%  Similarity=0.297  Sum_probs=200.2

Q ss_pred             CCceeeccCCCC-CEEEEEecCCeEEEEcCC---CeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccc
Q 036314           24 DDWVSAVDGSNP-GFILTGCYDNLGRVWKAG---GVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDA   99 (347)
Q Consensus        24 ~~~v~~~~~~~~-~~l~sg~~d~~i~iw~~~---~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~   99 (347)
                      +..|..+..+++ +.||++|. ..||+||+.   ...+..+.+|++.|.++.|..    +++.++|||+||++||||+..
T Consensus        40 dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~----dgrWMyTgseDgt~kIWdlR~  114 (311)
T KOG0315|consen   40 DSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQC----DGRWMYTGSEDGTVKIWDLRS  114 (311)
T ss_pred             ccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEEEEee----cCeEEEecCCCceEEEEeccC
Confidence            467888988854 57777764 689999974   236889999999999999988    446899999999999999976


Q ss_pred             cccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCcccccccccccc
Q 036314          100 EELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAI  179 (347)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (347)
                      ..+          +....|.++|+++..+|+..-|++|..+|.|++||+....+....                      
T Consensus       115 ~~~----------qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~l----------------------  162 (311)
T KOG0315|consen  115 LSC----------QRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHEL----------------------  162 (311)
T ss_pred             ccc----------chhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCcccccc----------------------
Confidence            322          223357899999999999999999999999999999764321110                      


Q ss_pred             ccccCCccceEEEEe-CCCCeEEEEecCCcEEEEECCCCceeee------eeeC--eeeEEEEeeCCCCcEEEEecCCCc
Q 036314          180 STLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSD------IFCG--KALNCIDIGGEGSALIAAGGSDPI  250 (347)
Q Consensus       180 ~~~~~h~~~v~~~~~-~~~~~l~s~s~dg~v~vwd~~~~~~~~~------~~~~--~~~~~~~~~~~~~~~la~~~~d~~  250 (347)
                        .......|.++.. +++.+++.+...|++.+|++........      ++.+  ....| -+ +++..+||+++.|.+
T Consensus       163 --iPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C-~l-SPd~k~lat~ssdkt  238 (311)
T KOG0315|consen  163 --IPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRC-LL-SPDVKYLATCSSDKT  238 (311)
T ss_pred             --CCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEE-EE-CCCCcEEEeecCCce
Confidence              0111235677765 7899999999999999999876433222      2222  22333 34 456678999999999


Q ss_pred             EEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecCCCCeEEEEeec
Q 036314          251 LRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKVLCADWW  324 (347)
Q Consensus       251 i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h~~~v~~~~~~  324 (347)
                      ++||+.+..  .+....+.+|..|+..++||.|+. +|+||+.|+.+|+||++.++.+..+.+|.....|++..
T Consensus       239 v~iwn~~~~--~kle~~l~gh~rWvWdc~FS~dg~-YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln  309 (311)
T KOG0315|consen  239 VKIWNTDDF--FKLELVLTGHQRWVWDCAFSADGE-YLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN  309 (311)
T ss_pred             EEEEecCCc--eeeEEEeecCCceEEeeeeccCcc-EEEecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence            999998743  234567889999999999999996 59999999999999999999999999998887877653

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=7.1e-33  Score=245.30  Aligned_cols=281  Identities=23%  Similarity=0.357  Sum_probs=237.4

Q ss_pred             CcCCceeeccCCCC-CEEEEEecCCeEEEEcCCC-eEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccc
Q 036314           22 LHDDWVSAVDGSNP-GFILTGCYDNLGRVWKAGG-VCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDA   99 (347)
Q Consensus        22 ~h~~~v~~~~~~~~-~~l~sg~~d~~i~iw~~~~-~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~   99 (347)
                      .|.+.|.++++.+. -.++++=++|++.|||-.. ..++.+.-..-+|.+..|.+..    ..+++||+|..||+|++++
T Consensus        11 ~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRk----nWiv~GsDD~~IrVfnynt   86 (794)
T KOG0276|consen   11 SRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARK----NWIVTGSDDMQIRVFNYNT   86 (794)
T ss_pred             ccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeecc----ceEEEecCCceEEEEeccc
Confidence            38899999998764 4788888999999999754 4677888888899999998733    4799999999999999987


Q ss_pred             cccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCcccccccccccc
Q 036314          100 EELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAI  179 (347)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (347)
                      .+         .+..|.+|.+-|++++.+|...+++|+|.|-+||+||-+..                        -.+.
T Consensus        87 ~e---------kV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~------------------------wa~~  133 (794)
T KOG0276|consen   87 GE---------KVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENE------------------------WACE  133 (794)
T ss_pred             ce---------eeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCc------------------------eeee
Confidence            64         56789999999999999999999999999999999987642                        2356


Q ss_pred             ccccCCccceEEEEe-C-CCCeEEEEecCCcEEEEECCCCceeeeeeeC-eeeEEEEeeC-CCCcEEEEecCCCcEEEEe
Q 036314          180 STLVGHTQCVSSVVW-P-QQETIYSASWDHSVRTWDVEMGKDLSDIFCG-KALNCIDIGG-EGSALIAAGGSDPILRIWD  255 (347)
Q Consensus       180 ~~~~~h~~~v~~~~~-~-~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~la~~~~d~~i~iwd  255 (347)
                      +++.||+..|.+++| | +...++|++.|++|++|.+.++.+..++..+ +.++|+++-+ ++...+++|++|.++++||
T Consensus       134 qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWD  213 (794)
T KOG0276|consen  134 QTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWD  213 (794)
T ss_pred             eEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEee
Confidence            789999999999998 4 5568999999999999999988888888744 4799999864 3445789999999999999


Q ss_pred             CCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecCCCCeEEEEeecC-CCEEEEccC
Q 036314          256 PRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKVLCADWWR-GDSVISGGV  334 (347)
Q Consensus       256 ~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~l~s~s~  334 (347)
                      ...   ...++++.||...|+.+.|+|.=+ .++|||+||++|||.-.+-+...++...-+.|||++-.+ ++.++.|..
T Consensus       214 yQt---k~CV~TLeGHt~Nvs~v~fhp~lp-iiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~D  289 (794)
T KOG0276|consen  214 YQT---KSCVQTLEGHTNNVSFVFFHPELP-IIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFD  289 (794)
T ss_pred             cch---HHHHHHhhcccccceEEEecCCCc-EEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEecc
Confidence            874   345789999999999999999875 699999999999999988777788877788999999875 446788888


Q ss_pred             CceEEEeec
Q 036314          335 DSKLCVSSG  343 (347)
Q Consensus       335 D~~v~vw~~  343 (347)
                      .|.|.|--|
T Consensus       290 eg~i~v~lg  298 (794)
T KOG0276|consen  290 EGSVTVKLG  298 (794)
T ss_pred             CCcEEEEcc
Confidence            887765433

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=100.00  E-value=5.8e-33  Score=256.24  Aligned_cols=275  Identities=24%  Similarity=0.395  Sum_probs=230.8

Q ss_pred             CcCCceeeccCCCCCEEEEEecCCeEEEEcC-CCeEEEE-eeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccc
Q 036314           22 LHDDWVSAVDGSNPGFILTGCYDNLGRVWKA-GGVCTHI-LEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDA   99 (347)
Q Consensus        22 ~h~~~v~~~~~~~~~~l~sg~~d~~i~iw~~-~~~~~~~-l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~   99 (347)
                      .|...+.+..+. ++++++++.|.++++|+. .+..+.. +.||.+.|.++++...+    ..|++||.|.++|+||..+
T Consensus       206 ~~~~~~~~~q~~-~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~----~~lvsgS~D~t~rvWd~~s  280 (537)
T KOG0274|consen  206 TDDHVVLCLQLH-DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGG----DKLVSGSTDKTERVWDCST  280 (537)
T ss_pred             cCcchhhhheee-cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCC----CEEEEEecCCcEEeEecCC
Confidence            355666666665 779999999999999996 5666666 99999999999997522    3699999999999999888


Q ss_pred             cccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCcccccccccccc
Q 036314          100 EELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAI  179 (347)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (347)
                      ++         +..++.+|...|.++...  ...+++||+|.+|++|+++++                         .++
T Consensus       281 g~---------C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~-------------------------~~l  324 (537)
T KOG0274|consen  281 GE---------CTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNG-------------------------ACL  324 (537)
T ss_pred             Cc---------EEEEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCc-------------------------ceE
Confidence            75         567899999999988754  457888999999999999853                         456


Q ss_pred             ccccCCccceEEEEeCCCCeEEEEecCCcEEEEECCCCceeeeeeeC-eeeEEEEeeCCCCcEEEEecCCCcEEEEeCCC
Q 036314          180 STLVGHTQCVSSVVWPQQETIYSASWDHSVRTWDVEMGKDLSDIFCG-KALNCIDIGGEGSALIAAGGSDPILRIWDPRK  258 (347)
Q Consensus       180 ~~~~~h~~~v~~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~  258 (347)
                      ..+.+|+.+|+++... +.++++|+.|++|++||+.+++++..+..+ ..+.++.+.+.  ..+.+|+.|+.|++||++.
T Consensus       325 ~l~~~h~~~V~~v~~~-~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~--~~~~Sgs~D~~IkvWdl~~  401 (537)
T KOG0274|consen  325 NLLRGHTGPVNCVQLD-EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE--NRLLSGSLDTTIKVWDLRT  401 (537)
T ss_pred             EEeccccccEEEEEec-CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc--ceEEeeeeccceEeecCCc
Confidence            7778899999999875 789999999999999999999999988754 47888877543  5788999999999999985


Q ss_pred             CCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecC-CCCeEEEEeecCCCEEEEccCCce
Q 036314          259 PGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDS-HKDKVLCADWWRGDSVISGGVDSK  337 (347)
Q Consensus       259 ~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~-h~~~v~~~~~~~~~~l~s~s~D~~  337 (347)
                      ..  ..+.++.+|...+..+.+..   .+|++++.|++|++||...++.+.++.+ |.+.|..+.+. ...+++++.|++
T Consensus       402 ~~--~c~~tl~~h~~~v~~l~~~~---~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~-~~~il~s~~~~~  475 (537)
T KOG0274|consen  402 KR--KCIHTLQGHTSLVSSLLLRD---NFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG-KEEILCSSDDGS  475 (537)
T ss_pred             hh--hhhhhhcCCccccccccccc---ceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC-cceEEEEecCCe
Confidence            41  45788999999998777643   3699999999999999999999999988 77888888875 457888899999


Q ss_pred             EEEeecccC
Q 036314          338 LCVSSGVSI  346 (347)
Q Consensus       338 v~vw~~~~~  346 (347)
                      +.+|+-.+-
T Consensus       476 ~~l~dl~~~  484 (537)
T KOG0274|consen  476 VKLWDLRSG  484 (537)
T ss_pred             eEEEecccC
Confidence            999987653

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=4.6e-32  Score=235.88  Aligned_cols=280  Identities=20%  Similarity=0.287  Sum_probs=220.0

Q ss_pred             CCCCcCCceeeccCCC-CCEEEEEecCCeEEEEcCCCe--E-EE------------------------------------
Q 036314           19 EPSLHDDWVSAVDGSN-PGFILTGCYDNLGRVWKAGGV--C-TH------------------------------------   58 (347)
Q Consensus        19 ~~~~h~~~v~~~~~~~-~~~l~sg~~d~~i~iw~~~~~--~-~~------------------------------------   58 (347)
                      .-.+|.-.++.+++++ |-|+|||-.-|+|||||..++  . ..                                    
T Consensus        54 iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~  133 (603)
T KOG0318|consen   54 IYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFL  133 (603)
T ss_pred             eeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEE
Confidence            3558988899888985 559999999999999985321  1 11                                    


Q ss_pred             --------EeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCC
Q 036314           59 --------ILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETS  130 (347)
Q Consensus        59 --------~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~  130 (347)
                              .+.||...|++++|-|...   .+++|||+|++|.+|+=.         +.+-..+++.|+..|+|+.|+||
T Consensus       134 ~DSG~SvGei~GhSr~ins~~~KpsRP---fRi~T~sdDn~v~ffeGP---------PFKFk~s~r~HskFV~~VRysPD  201 (603)
T KOG0318|consen  134 WDSGNSVGEITGHSRRINSVDFKPSRP---FRIATGSDDNTVAFFEGP---------PFKFKSSFREHSKFVNCVRYSPD  201 (603)
T ss_pred             ecCCCccceeeccceeEeeeeccCCCc---eEEEeccCCCeEEEeeCC---------CeeeeecccccccceeeEEECCC
Confidence                    2345666666666655432   367788888888887632         22333467789999999999999


Q ss_pred             CCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccc---cCCccceEEEEe-CCCCeEEEEecC
Q 036314          131 GNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTL---VGHTQCVSSVVW-PQQETIYSASWD  206 (347)
Q Consensus       131 ~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~h~~~v~~~~~-~~~~~l~s~s~d  206 (347)
                      |.+++|++.||+|.+||-.+++                         .+..+   .+|.+.|.++.| |++.+++++|.|
T Consensus       202 G~~Fat~gsDgki~iyDGktge-------------------------~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaD  256 (603)
T KOG0318|consen  202 GSRFATAGSDGKIYIYDGKTGE-------------------------KVGELEDSDAHKGSIFALSWSPDSTQFLTVSAD  256 (603)
T ss_pred             CCeEEEecCCccEEEEcCCCcc-------------------------EEEEecCCCCccccEEEEEECCCCceEEEecCC
Confidence            9999999999999999876543                         23333   479999999999 588999999999


Q ss_pred             CcEEEEECCCCceeeeeeeCe-----eeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeC
Q 036314          207 HSVRTWDVEMGKDLSDIFCGK-----ALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWH  281 (347)
Q Consensus       207 g~v~vwd~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s  281 (347)
                      .++||||+.+.+.++++..+.     .+.|+.-   + ..|++-+.+|+|.++++..+   .+.+.+.||...|+++..+
T Consensus       257 kt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq---k-d~lItVSl~G~in~ln~~d~---~~~~~i~GHnK~ITaLtv~  329 (603)
T KOG0318|consen  257 KTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ---K-DHLITVSLSGTINYLNPSDP---SVLKVISGHNKSITALTVS  329 (603)
T ss_pred             ceEEEEEeeccceEEEeecCCchhceEEEEEEe---C-CeEEEEEcCcEEEEecccCC---ChhheecccccceeEEEEc
Confidence            999999999999888887543     3444432   2 35678889999999998754   3578899999999999999


Q ss_pred             CCCCeEEEEEeCCCcEEEEEcCCCccceee-cCCCCeEEEEeecCCCEEEEccCCceEEEeec
Q 036314          282 NKSWFHLISASYDGKVMLWDLRTAWPLSVI-DSHKDKVLCADWWRGDSVISGGVDSKLCVSSG  343 (347)
Q Consensus       282 ~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~l~s~s~D~~v~vw~~  343 (347)
                      |++. +|.||+.||.|.=||..++..-... ++|.+.|.+++-+....+.+.|+|.++++-+.
T Consensus       330 ~d~~-~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~  391 (603)
T KOG0318|consen  330 PDGK-TIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISL  391 (603)
T ss_pred             CCCC-EEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEec
Confidence            9995 5999999999999999988654433 78999999999876567889999999998754

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=4.4e-33  Score=231.89  Aligned_cols=245  Identities=21%  Similarity=0.332  Sum_probs=213.0

Q ss_pred             EEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEEE
Q 036314           56 CTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVC  135 (347)
Q Consensus        56 ~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~  135 (347)
                      ..+.+.+|.+-|.++++-|.+    ..++|||.|++++|||+.++++         ..++.||...|..+++|+-..+++
T Consensus       143 l~rVi~gHlgWVr~vavdP~n----~wf~tgs~DrtikIwDlatg~L---------kltltGhi~~vr~vavS~rHpYlF  209 (460)
T KOG0285|consen  143 LYRVISGHLGWVRSVAVDPGN----EWFATGSADRTIKIWDLATGQL---------KLTLTGHIETVRGVAVSKRHPYLF  209 (460)
T ss_pred             ehhhhhhccceEEEEeeCCCc----eeEEecCCCceeEEEEcccCeE---------EEeecchhheeeeeeecccCceEE
Confidence            456788999999999998853    4799999999999999998864         457889999999999999999999


Q ss_pred             EeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEe-CCCCeEEEEecCCcEEEEEC
Q 036314          136 SGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDV  214 (347)
Q Consensus       136 sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~l~s~s~dg~v~vwd~  214 (347)
                      +++.|+.|+-||++..                         +.++.+-||-..|.++.. |.-+.|++++.|.++||||+
T Consensus       210 s~gedk~VKCwDLe~n-------------------------kvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDi  264 (460)
T KOG0285|consen  210 SAGEDKQVKCWDLEYN-------------------------KVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDI  264 (460)
T ss_pred             EecCCCeeEEEechhh-------------------------hhHHHhccccceeEEEeccccceeEEecCCcceEEEeee
Confidence            9999999999999863                         457888999999999985 66788999999999999999


Q ss_pred             CCCceeeeeee-CeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeC
Q 036314          215 EMGKDLSDIFC-GKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASY  293 (347)
Q Consensus       215 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~  293 (347)
                      ++...+..+.. ..++..+.+.+.++ .+++|+-|++|++||++.+.   ...++..|...|.++..+|.. +.+||+|.
T Consensus       265 Rtr~~V~~l~GH~~~V~~V~~~~~dp-qvit~S~D~tvrlWDl~agk---t~~tlt~hkksvral~lhP~e-~~fASas~  339 (460)
T KOG0285|consen  265 RTRASVHVLSGHTNPVASVMCQPTDP-QVITGSHDSTVRLWDLRAGK---TMITLTHHKKSVRALCLHPKE-NLFASASP  339 (460)
T ss_pred             cccceEEEecCCCCcceeEEeecCCC-ceEEecCCceEEEeeeccCc---eeEeeecccceeeEEecCCch-hhhhccCC
Confidence            99888888764 34677777766665 46799999999999998643   367788899999999999987 46999988


Q ss_pred             CCcEEEEEcCCCccceeecCCCCeEEEEeecCCCEEEEccCCceEEEeecc
Q 036314          294 DGKVMLWDLRTAWPLSVIDSHKDKVLCADWWRGDSVISGGVDSKLCVSSGV  344 (347)
Q Consensus       294 D~~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~D~~v~vw~~~  344 (347)
                      | .|+-|++-.++.++.+.+|.+-+.+++-..+..+++|+..|.+.+|+.-
T Consensus       340 d-nik~w~~p~g~f~~nlsgh~~iintl~~nsD~v~~~G~dng~~~fwdwk  389 (460)
T KOG0285|consen  340 D-NIKQWKLPEGEFLQNLSGHNAIINTLSVNSDGVLVSGGDNGSIMFWDWK  389 (460)
T ss_pred             c-cceeccCCccchhhccccccceeeeeeeccCceEEEcCCceEEEEEecC
Confidence            7 4899999999999999999999999998777799999999999999864

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1e-31  Score=242.48  Aligned_cols=305  Identities=20%  Similarity=0.330  Sum_probs=236.3

Q ss_pred             ceEEEEEEeccCCCCcCCCCCcCCceeeccCC-CCCEEEEEecCCeEEEEcCC------------------------CeE
Q 036314            2 KVLEIEYIKAVAPQKEEEPSLHDDWVSAVDGS-NPGFILTGCYDNLGRVWKAG------------------------GVC   56 (347)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~l~sg~~d~~i~iw~~~------------------------~~~   56 (347)
                      |++.+++.+.+   ..-...+|+++|.+.-|. +..-|.|.|.||.+-+|.-.                        +..
T Consensus       170 rl~~v~~~k~~---~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Ee  246 (893)
T KOG0291|consen  170 RLFGVDGNKNL---FTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEE  246 (893)
T ss_pred             EEEEecccccc---ceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchh
Confidence            56677777664   334577999999988887 45579999999999999422                        111


Q ss_pred             -----------EEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccC--------------------
Q 036314           57 -----------THILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNH--------------------  105 (347)
Q Consensus        57 -----------~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~--------------------  105 (347)
                                 .+.|......|++.+|++.    ...|++|=..|...+|++..-+++..                    
T Consensus       247 k~~~~~~~k~~k~~ln~~~~kvtaa~fH~~----t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWi  322 (893)
T KOG0291|consen  247 KTHKIFWYKTKKHYLNQNSSKVTAAAFHKG----TNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWI  322 (893)
T ss_pred             hhcceEEEEEEeeeecccccceeeeeccCC----ceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEE
Confidence                       1224444578899999873    34788888888888888765443210                    


Q ss_pred             ----cc----------ccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCcccc
Q 036314          106 ----PK----------KIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEE  171 (347)
Q Consensus       106 ----~~----------~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~  171 (347)
                          .+          .-..+-...+|...+++++++|||+++++|+.||.|||||..++                    
T Consensus       323 A~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sg--------------------  382 (893)
T KOG0291|consen  323 AFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSG--------------------  382 (893)
T ss_pred             EEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCc--------------------
Confidence                00          00111234689999999999999999999999999999998753                    


Q ss_pred             ccccccccccccCCccceEEEEeC-CCCeEEEEecCCcEEEEECCCCceeeeeeeCe--eeEEEEeeCCCCcEEEEecCC
Q 036314          172 PQLEGEAISTLVGHTQCVSSVVWP-QQETIYSASWDHSVRTWDVEMGKDLSDIFCGK--ALNCIDIGGEGSALIAAGGSD  248 (347)
Q Consensus       172 ~~~~~~~~~~~~~h~~~v~~~~~~-~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~la~~~~d  248 (347)
                           -|+-++..|+..|..+.|. .++.++|.|.||+|+.||+...+..+++..+.  ...|++..|.+ .++.+|+.|
T Consensus       383 -----fC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sG-elV~AG~~d  456 (893)
T KOG0291|consen  383 -----FCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSG-ELVCAGAQD  456 (893)
T ss_pred             -----eEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCC-CEEEeeccc
Confidence                 4677889999999999985 67789999999999999999888888776655  45788886554 577778777


Q ss_pred             C-cEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCC-ccceeecCCCCeEEEEeecC-
Q 036314          249 P-ILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTA-WPLSVIDSHKDKVLCADWWR-  325 (347)
Q Consensus       249 ~-~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~-~~~~~~~~h~~~v~~~~~~~-  325 (347)
                      . .|.+|+...+   ..+-.++||.++|.++.|+|++. .|||+|+|.+||+||+=.. ....+++ +...|+.+.|+| 
T Consensus       457 ~F~IfvWS~qTG---qllDiLsGHEgPVs~l~f~~~~~-~LaS~SWDkTVRiW~if~s~~~vEtl~-i~sdvl~vsfrPd  531 (893)
T KOG0291|consen  457 SFEIFVWSVQTG---QLLDILSGHEGPVSGLSFSPDGS-LLASGSWDKTVRIWDIFSSSGTVETLE-IRSDVLAVSFRPD  531 (893)
T ss_pred             eEEEEEEEeecC---eeeehhcCCCCcceeeEEccccC-eEEeccccceEEEEEeeccCceeeeEe-eccceeEEEEcCC
Confidence            6 7999998742   34668899999999999999996 6999999999999998543 2344443 567899999986 


Q ss_pred             CCEEEEccCCceEEEeecc
Q 036314          326 GDSVISGGVDSKLCVSSGV  344 (347)
Q Consensus       326 ~~~l~s~s~D~~v~vw~~~  344 (347)
                      |+.||.+..||.|.+|+..
T Consensus       532 G~elaVaTldgqItf~d~~  550 (893)
T KOG0291|consen  532 GKELAVATLDGQITFFDIK  550 (893)
T ss_pred             CCeEEEEEecceEEEEEhh
Confidence            7789999999999999865

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=3.2e-33  Score=230.20  Aligned_cols=278  Identities=17%  Similarity=0.225  Sum_probs=229.8

Q ss_pred             CcCCceeeccCC-CCCEEEEEecCCeEEEEcC-CCeEE--------EEeeccCCceEEEEEeecCCCceEEEEEccCCCc
Q 036314           22 LHDDWVSAVDGS-NPGFILTGCYDNLGRVWKA-GGVCT--------HILEGHCGAVSSVNIIKSDGLKYVTVATASKDQT   91 (347)
Q Consensus        22 ~h~~~v~~~~~~-~~~~l~sg~~d~~i~iw~~-~~~~~--------~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~   91 (347)
                      +.+..+-|..|+ +++||+|||.||-|.+||. .|+..        ..|.-+..+|.|+.|+++.    .+||+|+.||.
T Consensus       211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDs----EMlAsGsqDGk  286 (508)
T KOG0275|consen  211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDS----EMLASGSQDGK  286 (508)
T ss_pred             ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccH----HHhhccCcCCc
Confidence            567788899999 5679999999999999995 45332        2366788999999999843    47999999999


Q ss_pred             EEEEeccccccccCccccceeeeee-ccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccc
Q 036314           92 LRLWKFDAEELVNHPKKIRSFKILR-GHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVE  170 (347)
Q Consensus        92 v~~wd~~~~~~~~~~~~~~~~~~~~-~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~  170 (347)
                      |++|.+.++.++.         .|. +|+..|+|+.|+.|+..++|+|.|.++|+--+.+                    
T Consensus       287 IKvWri~tG~ClR---------rFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKS--------------------  337 (508)
T KOG0275|consen  287 IKVWRIETGQCLR---------RFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKS--------------------  337 (508)
T ss_pred             EEEEEEecchHHH---------HhhhhhccCeeEEEEccCcchhhcccccceEEEecccc--------------------
Confidence            9999999987643         343 8999999999999999999999999999987654                    


Q ss_pred             cccccccccccccCCccceEEEEe-CCCCeEEEEecCCcEEEEECCCCceeeeeee---CeeeEEEEeeCCCCcEEEEec
Q 036314          171 EPQLEGEAISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFC---GKALNCIDIGGEGSALIAAGG  246 (347)
Q Consensus       171 ~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~la~~~  246 (347)
                           +++++.++||+..|+...| ++|..++++|.||+|++|+.++.+++.++..   ..+++.+..-|.+...++.+-
T Consensus       338 -----GK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCN  412 (508)
T KOG0275|consen  338 -----GKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCN  412 (508)
T ss_pred             -----chhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEc
Confidence                 4678899999999999988 5788999999999999999999998877653   235677777677788888999


Q ss_pred             CCCcEEEEeCCCCCCCCCeEEecCCC---CCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecCCCCeEEEEee
Q 036314          247 SDPILRIWDPRKPGTSAPVFQFSSHN---SWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKVLCADW  323 (347)
Q Consensus       247 ~d~~i~iwd~~~~~~~~~~~~~~~h~---~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h~~~v~~~~~  323 (347)
                      ..+++.+.++..  +  .+..++...   +...++..+|.|.+ +.+.++|+.+.-+.+..|....++.-|+..|.++.-
T Consensus       413 rsntv~imn~qG--Q--vVrsfsSGkREgGdFi~~~lSpkGew-iYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~H  487 (508)
T KOG0275|consen  413 RSNTVYIMNMQG--Q--VVRSFSSGKREGGDFINAILSPKGEW-IYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTH  487 (508)
T ss_pred             CCCeEEEEeccc--e--EEeeeccCCccCCceEEEEecCCCcE-EEEEccCcEEEEEEeecCceeeeeeccccccccccc
Confidence            999999998863  2  234443221   22345668999964 889999999999999999988999999999999998


Q ss_pred             cC-CCEEEEccCCceEEEee
Q 036314          324 WR-GDSVISGGVDSKLCVSS  342 (347)
Q Consensus       324 ~~-~~~l~s~s~D~~v~vw~  342 (347)
                      +| .+.||+=+.||.+++|-
T Consensus       488 HPHqNllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  488 HPHQNLLASYSEDGLLKLWK  507 (508)
T ss_pred             CcccchhhhhcccchhhhcC
Confidence            87 45799999999999994

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=1e-33  Score=239.14  Aligned_cols=243  Identities=24%  Similarity=0.382  Sum_probs=204.9

Q ss_pred             CCCcCCceeeccCC-CCCEEEEEecCCeEEEEcCCCeEEEEeeccC-CceEEEEEeecCCCceEEEEEccCCCcEEEEec
Q 036314           20 PSLHDDWVSAVDGS-NPGFILTGCYDNLGRVWKAGGVCTHILEGHC-GAVSSVNIIKSDGLKYVTVATASKDQTLRLWKF   97 (347)
Q Consensus        20 ~~~h~~~v~~~~~~-~~~~l~sg~~d~~i~iw~~~~~~~~~l~~h~-~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~   97 (347)
                      .-.|+..|+++..+ ++.+++||..||.|++|++.-..++.+.+|. ..|.+++|+|.+.    .++|+|+||+|+|||.
T Consensus       134 lQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~~ahh~eaIRdlafSpnDs----kF~t~SdDg~ikiWdf  209 (464)
T KOG0284|consen  134 LQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKIIQAHHAEAIRDLAFSPNDS----KFLTCSDDGTIKIWDF  209 (464)
T ss_pred             hhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHHhhHhhhhhhheeccCCCCc----eeEEecCCCeEEEEec
Confidence            44899999999977 6789999999999999998655566666655 8999999999544    4899999999999997


Q ss_pred             cccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCcccccccccc
Q 036314           98 DAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGE  177 (347)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (347)
                      ...+         .-..++||.--|.+++|+|...+++|||.|..|++||..+                         +.
T Consensus       210 ~~~k---------ee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprS-------------------------g~  255 (464)
T KOG0284|consen  210 RMPK---------EERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRS-------------------------GS  255 (464)
T ss_pred             cCCc---------hhheeccCCCCcceeccCCccceeEEccCCceeEeecCCC-------------------------cc
Confidence            5432         2345789999999999999999999999999999999876                         35


Q ss_pred             ccccccCCccceEEEEe-CCCCeEEEEecCCcEEEEECCCCceeeeee-eCeeeEEEEeeCCCCcEEEEecCCCcEEEEe
Q 036314          178 AISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIF-CGKALNCIDIGGEGSALIAAGGSDPILRIWD  255 (347)
Q Consensus       178 ~~~~~~~h~~~v~~~~~-~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd  255 (347)
                      ++.++-+|...|..+.| +++++|+++|.|..++++|+++-+.+.... +.+.+.++.++|-...+|.+|+.||.|..|.
T Consensus       256 cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~  335 (464)
T KOG0284|consen  256 CLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWV  335 (464)
T ss_pred             hhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEe
Confidence            67888999999999999 577899999999999999999766666665 4457899999998889999999999999998


Q ss_pred             CCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcC
Q 036314          256 PRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLR  303 (347)
Q Consensus       256 ~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~  303 (347)
                      +.... +... .-.+|...|.+++|+|-| .+|++|+.|.++++|.-.
T Consensus       336 v~~~~-p~~~-i~~AHd~~iwsl~~hPlG-hil~tgsnd~t~rfw~r~  380 (464)
T KOG0284|consen  336 VGLEE-PLGE-IPPAHDGEIWSLAYHPLG-HILATGSNDRTVRFWTRN  380 (464)
T ss_pred             ccccc-cccC-CCcccccceeeeeccccc-eeEeecCCCcceeeeccC
Confidence            76322 2111 224799999999999998 579999999999999643

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=100.00  E-value=1.5e-33  Score=238.44  Aligned_cols=278  Identities=22%  Similarity=0.358  Sum_probs=219.8

Q ss_pred             CCCcCCceeeccCCCC-CEEEEEecCCeEEEEcCCC-e--EEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEE
Q 036314           20 PSLHDDWVSAVDGSNP-GFILTGCYDNLGRVWKAGG-V--CTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLW   95 (347)
Q Consensus        20 ~~~h~~~v~~~~~~~~-~~l~sg~~d~~i~iw~~~~-~--~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~w   95 (347)
                      +..|.+.+..+.|-++ +.|+|||.|..|++|+..+ +  ...+|.|..+.|+++.|.+++    .++++++.|+.+++|
T Consensus       171 ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~----~~~iAas~d~~~r~W  246 (459)
T KOG0288|consen  171 LDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDN----KHVIAASNDKNLRLW  246 (459)
T ss_pred             hhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCC----ceEEeecCCCceeee
Confidence            5579999999998754 7999999999999999643 3  356788999999999998743    468889999999999


Q ss_pred             eccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCcccccccc
Q 036314           96 KFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLE  175 (347)
Q Consensus        96 d~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (347)
                      +++..+         ...+|.||++.|+++.|..+...+++|+.|.+||+||+....+...                   
T Consensus       247 nvd~~r---------~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt-------------------  298 (459)
T KOG0288|consen  247 NVDSLR---------LRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKT-------------------  298 (459)
T ss_pred             eccchh---------hhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecc-------------------
Confidence            998754         4567899999999999988877799999999999999976433211                   


Q ss_pred             ccccccccCCccceEEEEeCCCCeEEEEecCCcEEEEECCCCceeeeeeeCeeeEEEEeeCCCCcEEEEecCCCcEEEEe
Q 036314          176 GEAISTLVGHTQCVSSVVWPQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEGSALIAAGGSDPILRIWD  255 (347)
Q Consensus       176 ~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd  255 (347)
                            +- ....+..+... ...++|+..|++|+.||.+++.....+..+..+..+++..++ ..+.+++.|.++.+.|
T Consensus       299 ------~l-~~S~cnDI~~~-~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g-~~lLsssRDdtl~viD  369 (459)
T KOG0288|consen  299 ------VL-PGSQCNDIVCS-ISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDG-LELLSSSRDDTLKVID  369 (459)
T ss_pred             ------cc-ccccccceEec-ceeeeecccccceEEEeccCCceeeEeecCcceeeEeeccCC-eEEeeecCCCceeeee
Confidence                  11 11122333322 345789999999999999999998888888899999997655 4566779999999999


Q ss_pred             CCCCCCCCCeEEecCC----CCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecCCC-C-eEEEEeecC-CCE
Q 036314          256 PRKPGTSAPVFQFSSH----NSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHK-D-KVLCADWWR-GDS  328 (347)
Q Consensus       256 ~~~~~~~~~~~~~~~h----~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h~-~-~v~~~~~~~-~~~  328 (347)
                      ++..+-   ...+...    ..-.+.+.|||++.| +|+||.||.|+||++.+++..+.+.... + .|++++|.+ |..
T Consensus       370 lRt~eI---~~~~sA~g~k~asDwtrvvfSpd~~Y-vaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~  445 (459)
T KOG0288|consen  370 LRTKEI---RQTFSAEGFKCASDWTRVVFSPDGSY-VAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSG  445 (459)
T ss_pred             cccccE---EEEeeccccccccccceeEECCCCce-eeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCch
Confidence            985321   2222111    112678999999975 9999999999999999999888876433 3 699999975 888


Q ss_pred             EEEccCCceEEEee
Q 036314          329 VISGGVDSKLCVSS  342 (347)
Q Consensus       329 l~s~s~D~~v~vw~  342 (347)
                      |++++.++.+++|.
T Consensus       446 Llsadk~~~v~lW~  459 (459)
T KOG0288|consen  446 LLSADKQKAVTLWT  459 (459)
T ss_pred             hhcccCCcceEecC
Confidence            99999999999995

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.4e-32  Score=250.34  Aligned_cols=275  Identities=21%  Similarity=0.340  Sum_probs=223.0

Q ss_pred             CceeeccCCCCC-EEEEEecCCeEEEEcCC-CeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEecccccc
Q 036314           25 DWVSAVDGSNPG-FILTGCYDNLGRVWKAG-GVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEEL  102 (347)
Q Consensus        25 ~~v~~~~~~~~~-~l~sg~~d~~i~iw~~~-~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~  102 (347)
                      ..|..++|.+.+ .++++=..|.|++||-. +.++..|.+|.++|..+.|+|...    .++||++|-.||+|++...  
T Consensus        10 sRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qp----lFVSGGDDykIkVWnYk~r--   83 (1202)
T KOG0292|consen   10 SRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQP----LFVSGGDDYKIKVWNYKTR--   83 (1202)
T ss_pred             ccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCC----eEEecCCccEEEEEecccc--
Confidence            456678887654 88888899999999954 888889999999999999999654    6899999999999998765  


Q ss_pred             ccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccc
Q 036314          103 VNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTL  182 (347)
Q Consensus       103 ~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (347)
                             +++.++.||-+-|+.+.|++.-.+|+|+|.|.||+||+-.+                         ++++..+
T Consensus        84 -------rclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqs-------------------------r~~iavl  131 (1202)
T KOG0292|consen   84 -------RCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQS-------------------------RKCIAVL  131 (1202)
T ss_pred             -------eehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccC-------------------------CceEEEE
Confidence                   46678899999999999999999999999999999999765                         3568899


Q ss_pred             cCCccceEEEEeC-CCCeEEEEecCCcEEEEECCCCce----------------------------eeeee--eCeeeEE
Q 036314          183 VGHTQCVSSVVWP-QQETIYSASWDHSVRTWDVEMGKD----------------------------LSDIF--CGKALNC  231 (347)
Q Consensus       183 ~~h~~~v~~~~~~-~~~~l~s~s~dg~v~vwd~~~~~~----------------------------~~~~~--~~~~~~~  231 (347)
                      .||+..|.|..|. ..+.++|+|.|.+|||||+..-+.                            ++.+.  +...++.
T Consensus       132 tGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNw  211 (1202)
T KOG0292|consen  132 TGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNW  211 (1202)
T ss_pred             ecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccce
Confidence            9999999999984 477899999999999999742110                            11111  1235777


Q ss_pred             EEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceee
Q 036314          232 IDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVI  311 (347)
Q Consensus       232 ~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~  311 (347)
                      .+|+|.- .+|++|++|..|++|.+...... .+-+..+|.+.|.++.|+|.-. +++|.|+|++|+|||+.+...+++|
T Consensus       212 aAfhpTl-pliVSG~DDRqVKlWrmnetKaW-EvDtcrgH~nnVssvlfhp~q~-lIlSnsEDksirVwDm~kRt~v~tf  288 (1202)
T KOG0292|consen  212 AAFHPTL-PLIVSGADDRQVKLWRMNETKAW-EVDTCRGHYNNVSSVLFHPHQD-LILSNSEDKSIRVWDMTKRTSVQTF  288 (1202)
T ss_pred             EEecCCc-ceEEecCCcceeeEEEeccccce-eehhhhcccCCcceEEecCccc-eeEecCCCccEEEEecccccceeee
Confidence            8887743 38899999999999987643222 2345679999999999999763 7999999999999999999999999


Q ss_pred             cCCCCeEEEEeecC-CCEEEEccCCceEEEe
Q 036314          312 DSHKDKVLCADWWR-GDSVISGGVDSKLCVS  341 (347)
Q Consensus       312 ~~h~~~v~~~~~~~-~~~l~s~s~D~~v~vw  341 (347)
                      ....+.-|+++-+| .+.+|+ +.|+-+.|+
T Consensus       289 rrendRFW~laahP~lNLfAA-gHDsGm~VF  318 (1202)
T KOG0292|consen  289 RRENDRFWILAAHPELNLFAA-GHDSGMIVF  318 (1202)
T ss_pred             eccCCeEEEEEecCCcceeee-ecCCceEEE
Confidence            87778899999887 455555 555544443

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=8.1e-31  Score=258.77  Aligned_cols=265  Identities=18%  Similarity=0.282  Sum_probs=208.6

Q ss_pred             CCeEEEEcCCCeE-EE-----EeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeeeec
Q 036314           44 DNLGRVWKAGGVC-TH-----ILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRG  117 (347)
Q Consensus        44 d~~i~iw~~~~~~-~~-----~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~  117 (347)
                      +|.+++|+..... ..     .+.+|.+.|.+++|++++    ..|++|+.|++|++|++....... .....+...+. 
T Consensus       457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg----~~latgg~D~~I~iwd~~~~~~~~-~~~~~~~~~~~-  530 (793)
T PLN00181        457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDG----EFFATAGVNKKIKIFECESIIKDG-RDIHYPVVELA-  530 (793)
T ss_pred             hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCC----CEEEEEeCCCEEEEEECCcccccc-cccccceEEec-
Confidence            6778888864321 11     244689999999999854    479999999999999975321000 00001122233 


Q ss_pred             cccceEEEEEeCC-CCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEeC-
Q 036314          118 HKASVHSIAAETS-GNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWP-  195 (347)
Q Consensus       118 h~~~V~~v~~s~~-~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-  195 (347)
                      +...|.+++|++. +.+|++++.||+|++||+.+.                         ..+..+.+|...|.++.|. 
T Consensus       531 ~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~-------------------------~~~~~~~~H~~~V~~l~~~p  585 (793)
T PLN00181        531 SRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARS-------------------------QLVTEMKEHEKRVWSIDYSS  585 (793)
T ss_pred             ccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCC-------------------------eEEEEecCCCCCEEEEEEcC
Confidence            3467899999874 789999999999999998753                         2345678899999999994 


Q ss_pred             -CCCeEEEEecCCcEEEEECCCCceeeeeeeCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCC
Q 036314          196 -QQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSW  274 (347)
Q Consensus       196 -~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~  274 (347)
                       ++..|++++.|++|++||++++..+..+.....+.++.+.++++..+++|+.|+.|++||++...  .+...+.+|...
T Consensus       586 ~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~--~~~~~~~~h~~~  663 (793)
T PLN00181        586 ADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPK--LPLCTMIGHSKT  663 (793)
T ss_pred             CCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCC--ccceEecCCCCC
Confidence             56789999999999999999988877776666788888877778899999999999999998532  245677899999


Q ss_pred             eeEEEeCCCCCeEEEEEeCCCcEEEEEcCCC------ccceeecCCCCeEEEEeecC-CCEEEEccCCceEEEeec
Q 036314          275 ISACKWHNKSWFHLISASYDGKVMLWDLRTA------WPLSVIDSHKDKVLCADWWR-GDSVISGGVDSKLCVSSG  343 (347)
Q Consensus       275 v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~------~~~~~~~~h~~~v~~~~~~~-~~~l~s~s~D~~v~vw~~  343 (347)
                      |.++.|. ++. .|++++.|++|++||++.+      .++.++.+|.+.+.++.|++ +.+||+|+.|++|+||+-
T Consensus       664 V~~v~f~-~~~-~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~  737 (793)
T PLN00181        664 VSYVRFV-DSS-TLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHK  737 (793)
T ss_pred             EEEEEEe-CCC-EEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEEC
Confidence            9999997 443 5999999999999999753      45778999999999999975 779999999999999984

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=100.00  E-value=6.3e-32  Score=241.93  Aligned_cols=275  Identities=23%  Similarity=0.376  Sum_probs=219.4

Q ss_pred             CCCCcCCceeeccCCCCCEEEEEecCCeEEEEcCCC-eE--EEEeeccCCceEE-EEEeecCCCceEEEEEccCCCcEEE
Q 036314           19 EPSLHDDWVSAVDGSNPGFILTGCYDNLGRVWKAGG-VC--THILEGHCGAVSS-VNIIKSDGLKYVTVATASKDQTLRL   94 (347)
Q Consensus        19 ~~~~h~~~v~~~~~~~~~~l~sg~~d~~i~iw~~~~-~~--~~~l~~h~~~V~~-v~~~~~~~~~~~~l~s~s~Dg~v~~   94 (347)
                      ...+|+..|.+++..++..++++|.||++++|+..+ ..  .+.+.+|.+.|.. +.+.+.   +...|++|+.|.++.+
T Consensus         9 ~l~gH~~DVr~v~~~~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~---~~~~l~~g~~D~~i~v   85 (745)
T KOG0301|consen    9 ELEGHKSDVRAVAVTDGVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAES---DKGRLVVGGMDTTIIV   85 (745)
T ss_pred             EeccCccchheeEecCCeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccc---cCcceEeecccceEEE
Confidence            467999999999988888999999999999998744 32  3568889888876 766652   2235899999999999


Q ss_pred             EeccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccc
Q 036314           95 WKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQL  174 (347)
Q Consensus        95 wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (347)
                      |.+...         .++.+|.+|+..|.+++...++. ++|||+|.|+++|...                         
T Consensus        86 ~~~~~~---------~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~-------------------------  130 (745)
T KOG0301|consen   86 FKLSQA---------EPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIG-------------------------  130 (745)
T ss_pred             EecCCC---------CchhhhhccccceeeeecCCcCc-eEecccccceEEecch-------------------------
Confidence            998754         36778999999999998777777 8999999999999754                         


Q ss_pred             cccccccccCCccceEEEEeCCCCeEEEEecCCcEEEEECCCCceeeeeeeC-eeeEEEEeeCCCCcEEEEecCCCcEEE
Q 036314          175 EGEAISTLVGHTQCVSSVVWPQQETIYSASWDHSVRTWDVEMGKDLSDIFCG-KALNCIDIGGEGSALIAAGGSDPILRI  253 (347)
Q Consensus       175 ~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~la~~~~d~~i~i  253 (347)
                        ++...+.+|+..|++++.-+.+.++|||.|++|++|.-  ++.++++..+ ..+..+++-+.  ..|++++.||.|++
T Consensus       131 --~l~~~l~gH~asVWAv~~l~e~~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~--~~flScsNDg~Ir~  204 (745)
T KOG0301|consen  131 --ELVYSLQGHTASVWAVASLPENTYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDD--SHFLSCSNDGSIRL  204 (745)
T ss_pred             --hhhcccCCcchheeeeeecCCCcEEeccCcceeeeccC--CchhhhhccchhheeeeEEecC--CCeEeecCCceEEE
Confidence              34456899999999998633348999999999999975  5666666644 35677777543  35789999999999


Q ss_pred             EeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecCCCCeEEEEeecCCCEEEEcc
Q 036314          254 WDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKVLCADWWRGDSVISGG  333 (347)
Q Consensus       254 wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s  333 (347)
                      |++..    ..+..+.+|++.|.++...+++. .++|+++|+++++|+..  ++.+.++--+-.||++.+.+..-+++|+
T Consensus       205 w~~~g----e~l~~~~ghtn~vYsis~~~~~~-~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgDIvvg~  277 (745)
T KOG0301|consen  205 WDLDG----EVLLEMHGHTNFVYSISMALSDG-LIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGDIVVGG  277 (745)
T ss_pred             EeccC----ceeeeeeccceEEEEEEecCCCC-eEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCCEEEec
Confidence            99852    23678889999999999555553 69999999999999987  5677765333489999886444568888


Q ss_pred             CCceEEEeecc
Q 036314          334 VDSKLCVSSGV  344 (347)
Q Consensus       334 ~D~~v~vw~~~  344 (347)
                      .||.||||+..
T Consensus       278 SDG~VrVfT~~  288 (745)
T KOG0301|consen  278 SDGRVRVFTVD  288 (745)
T ss_pred             cCceEEEEEec
Confidence            89999999854

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.8e-32  Score=240.10  Aligned_cols=246  Identities=17%  Similarity=0.310  Sum_probs=209.1

Q ss_pred             EEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEe
Q 036314           58 HILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSG  137 (347)
Q Consensus        58 ~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sg  137 (347)
                      +.+..|+..|-++.++|-..    .++++-..|.|.||+.++.+.         .+.+.-..-||++..|-.--+++++|
T Consensus         7 rk~~~rSdRVKsVd~HPteP----w~la~LynG~V~IWnyetqtm---------VksfeV~~~PvRa~kfiaRknWiv~G   73 (794)
T KOG0276|consen    7 RKFQSRSDRVKSVDFHPTEP----WILAALYNGDVQIWNYETQTM---------VKSFEVSEVPVRAAKFIARKNWIVTG   73 (794)
T ss_pred             hHhhccCCceeeeecCCCCc----eEEEeeecCeeEEEeccccee---------eeeeeecccchhhheeeeccceEEEe
Confidence            34556899999999999544    577888999999999987654         34455568889999998888999999


Q ss_pred             eCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEe-CCCCeEEEEecCCcEEEEECCC
Q 036314          138 SWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEM  216 (347)
Q Consensus       138 s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~l~s~s~dg~v~vwd~~~  216 (347)
                      +.|..||||+..+.                         +.+.++..|.+.|++++. |...+++|+|.|-+|++||.+.
T Consensus        74 sDD~~IrVfnynt~-------------------------ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~  128 (794)
T KOG0276|consen   74 SDDMQIRVFNYNTG-------------------------EKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWEN  128 (794)
T ss_pred             cCCceEEEEecccc-------------------------eeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccC
Confidence            99999999998764                         346788999999999985 7788999999999999999976


Q ss_pred             Cceeeeee--eCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCC-CeEEEEEeC
Q 036314          217 GKDLSDIF--CGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKS-WFHLISASY  293 (347)
Q Consensus       217 ~~~~~~~~--~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~~~l~s~s~  293 (347)
                      .-.....+  +.+.+++++|.|.+.+.+|+++.|++|++|.+.+   +.+.+++.+|...|+++.+-+.+ ..+|+||+.
T Consensus       129 ~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs---~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaD  205 (794)
T KOG0276|consen  129 EWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGS---PHPNFTLEGHEKGVNCVDYYTGGDKPYLISGAD  205 (794)
T ss_pred             ceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCC---CCCceeeeccccCcceEEeccCCCcceEEecCC
Confidence            53333333  2357899999999999999999999999999875   45689999999999999987654 235999999


Q ss_pred             CCcEEEEEcCCCccceeecCCCCeEEEEeecCC-CEEEEccCCceEEEeecc
Q 036314          294 DGKVMLWDLRTAWPLSVIDSHKDKVLCADWWRG-DSVISGGVDSKLCVSSGV  344 (347)
Q Consensus       294 D~~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~-~~l~s~s~D~~v~vw~~~  344 (347)
                      |.+|+|||..+..++++++||...|..+.|+|. ..++|||.||+|+||-..
T Consensus       206 D~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~  257 (794)
T KOG0276|consen  206 DLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSK  257 (794)
T ss_pred             CceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCc
Confidence            999999999999999999999999999999874 479999999999999653

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.5e-32  Score=249.25  Aligned_cols=245  Identities=20%  Similarity=0.370  Sum_probs=207.5

Q ss_pred             eeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeC
Q 036314           60 LEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSW  139 (347)
Q Consensus        60 l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~  139 (347)
                      |..-+..|-.++|+|...    .++++-..|.|++||..-+++         +..|..|.+||+.++|+|++.+++||+.
T Consensus         5 fEskSsRvKglsFHP~rP----wILtslHsG~IQlWDYRM~tl---------i~rFdeHdGpVRgv~FH~~qplFVSGGD   71 (1202)
T KOG0292|consen    5 FESKSSRVKGLSFHPKRP----WILTSLHSGVIQLWDYRMGTL---------IDRFDEHDGPVRGVDFHPTQPLFVSGGD   71 (1202)
T ss_pred             hhcccccccceecCCCCC----EEEEeecCceeeeehhhhhhH---------HhhhhccCCccceeeecCCCCeEEecCC
Confidence            455567788999999765    588999999999999987764         4467899999999999999999999999


Q ss_pred             CCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEeC-CCCeEEEEecCCcEEEEECCCCc
Q 036314          140 DCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWP-QQETIYSASWDHSVRTWDVEMGK  218 (347)
Q Consensus       140 Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~l~s~s~dg~v~vwd~~~~~  218 (347)
                      |..|++|+...                         ..++.++.||-+.|+.+.|+ .-..|+|+|.|.+|+||+..+.+
T Consensus        72 DykIkVWnYk~-------------------------rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~  126 (1202)
T KOG0292|consen   72 DYKIKVWNYKT-------------------------RRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRK  126 (1202)
T ss_pred             ccEEEEEeccc-------------------------ceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCc
Confidence            99999998764                         35688999999999999984 56789999999999999999999


Q ss_pred             eeeeeee-CeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCC-------CC-------------------CCCCeEEecCC
Q 036314          219 DLSDIFC-GKALNCIDIGGEGSALIAAGGSDPILRIWDPRK-------PG-------------------TSAPVFQFSSH  271 (347)
Q Consensus       219 ~~~~~~~-~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~-------~~-------------------~~~~~~~~~~h  271 (347)
                      ++..+.. .+.++|..|+|.. .++++++.|.+||+||+..       ++                   ...-.+.+.||
T Consensus       127 ~iavltGHnHYVMcAqFhptE-DlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGH  205 (1202)
T KOG0292|consen  127 CIAVLTGHNHYVMCAQFHPTE-DLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGH  205 (1202)
T ss_pred             eEEEEecCceEEEeeccCCcc-ceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeeccc
Confidence            9887764 4689999998754 4889999999999999742       00                   00112467899


Q ss_pred             CCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCC--ccceeecCCCCeEEEEeecC-CCEEEEccCCceEEEeecc
Q 036314          272 NSWISACKWHNKSWFHLISASYDGKVMLWDLRTA--WPLSVIDSHKDKVLCADWWR-GDSVISGGVDSKLCVSSGV  344 (347)
Q Consensus       272 ~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~--~~~~~~~~h~~~v~~~~~~~-~~~l~s~s~D~~v~vw~~~  344 (347)
                      ...|+-++|+|.-+ +++||+.|..|++|.++.-  ..+.+..||.+.|.|+.|+| .+.+.|.|.|++|+||+..
T Consensus       206 DRGVNwaAfhpTlp-liVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~  280 (1202)
T KOG0292|consen  206 DRGVNWAAFHPTLP-LIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMT  280 (1202)
T ss_pred             ccccceEEecCCcc-eEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecc
Confidence            99999999999875 6999999999999998753  44667889999999999987 4579999999999999976

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=8.7e-32  Score=246.38  Aligned_cols=243  Identities=22%  Similarity=0.338  Sum_probs=187.8

Q ss_pred             CcCCCCCcCCceeeccCC-CCCEEEEEecCCeEEEEcCCC----------------------------------------
Q 036314           16 KEEEPSLHDDWVSAVDGS-NPGFILTGCYDNLGRVWKAGG----------------------------------------   54 (347)
Q Consensus        16 ~~~~~~~h~~~v~~~~~~-~~~~l~sg~~d~~i~iw~~~~----------------------------------------   54 (347)
                      ..++..+|++.|+++.|| +|.||||||.|+.||||.+-.                                        
T Consensus       259 ~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~  338 (712)
T KOG0283|consen  259 VQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSS  338 (712)
T ss_pred             eeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccc
Confidence            445556999999999999 677999999999999996321                                        


Q ss_pred             -------e--------------EEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceee
Q 036314           55 -------V--------------CTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFK  113 (347)
Q Consensus        55 -------~--------------~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~  113 (347)
                             .              ....|.||.+.|..|.|+..+     +|+|+|+|.|||||.+...+         +++
T Consensus       339 ~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-----fLLSSSMDKTVRLWh~~~~~---------CL~  404 (712)
T KOG0283|consen  339 SRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-----FLLSSSMDKTVRLWHPGRKE---------CLK  404 (712)
T ss_pred             cccccCCccccCCCccccccccchhhhhccchhheecccccCC-----eeEeccccccEEeecCCCcc---------eee
Confidence                   0              113477999999999998743     69999999999999987654         455


Q ss_pred             eeeccccceEEEEEeC-CCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEE
Q 036314          114 ILRGHKASVHSIAAET-SGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSV  192 (347)
Q Consensus       114 ~~~~h~~~V~~v~~s~-~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~  192 (347)
                      .| .|.+-|+||+|+| |.++|+|||-||.||||++.+...                          -.+..-.+-|+++
T Consensus       405 ~F-~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~V--------------------------v~W~Dl~~lITAv  457 (712)
T KOG0283|consen  405 VF-SHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKV--------------------------VDWNDLRDLITAV  457 (712)
T ss_pred             EE-ecCCeeEEEEecccCCCcEeecccccceEEeecCcCee--------------------------EeehhhhhhheeE
Confidence            55 5999999999999 568999999999999999876321                          1111122568888


Q ss_pred             Ee-CCCCeEEEEecCCcEEEEECCCCceeeeee--e-------CeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCC
Q 036314          193 VW-PQQETIYSASWDHSVRTWDVEMGKDLSDIF--C-------GKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTS  262 (347)
Q Consensus       193 ~~-~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~--~-------~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~  262 (347)
                      +| |+|+..+.|+.+|.+++|++...+......  .       +..++.+.+.|.+...+++.+.|..|||||.+..   
T Consensus       458 cy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~---  534 (712)
T KOG0283|consen  458 CYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDK---  534 (712)
T ss_pred             EeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccch---
Confidence            87 789999999999999999998766544332  1       2368888888766666677789999999999642   


Q ss_pred             CCeEEecCCCCC--eeEEEeCCCCCeEEEEEeCCCcEEEEEcC
Q 036314          263 APVFQFSSHNSW--ISACKWHNKSWFHLISASYDGKVMLWDLR  303 (347)
Q Consensus       263 ~~~~~~~~h~~~--v~~v~~s~~~~~~l~s~s~D~~i~lwd~~  303 (347)
                      ..+..|.|+.+.  -....|+.||. +|+++++|..|.||+..
T Consensus       535 ~lv~KfKG~~n~~SQ~~Asfs~Dgk-~IVs~seDs~VYiW~~~  576 (712)
T KOG0283|consen  535 DLVHKFKGFRNTSSQISASFSSDGK-HIVSASEDSWVYIWKND  576 (712)
T ss_pred             hhhhhhcccccCCcceeeeEccCCC-EEEEeecCceEEEEeCC
Confidence            234555555442  24567888886 59999999999999974

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=6.7e-31  Score=242.64  Aligned_cols=250  Identities=27%  Similarity=0.480  Sum_probs=204.7

Q ss_pred             EEEeecc-CCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEEE
Q 036314           57 THILEGH-CGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVC  135 (347)
Q Consensus        57 ~~~l~~h-~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~  135 (347)
                      ...+.+| ...|.++.|++++    ..+++++.|+.+++|+....+.       .....+.+|...|.+++|+|++++++
T Consensus       151 ~~~~~~~~~~sv~~~~fs~~g----~~l~~~~~~~~i~~~~~~~~~~-------~~~~~l~~h~~~v~~~~fs~d~~~l~  219 (456)
T KOG0266|consen  151 EQTLAGHECPSVTCVDFSPDG----RALAAASSDGLIRIWKLEGIKS-------NLLRELSGHTRGVSDVAFSPDGSYLL  219 (456)
T ss_pred             eeeecccccCceEEEEEcCCC----CeEEEccCCCcEEEeecccccc-------hhhccccccccceeeeEECCCCcEEE
Confidence            3445554 7889999999954    3699999999999999854431       23445689999999999999999999


Q ss_pred             EeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEe-CCCCeEEEEecCCcEEEEEC
Q 036314          136 SGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDV  214 (347)
Q Consensus       136 sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~l~s~s~dg~v~vwd~  214 (347)
                      +++.|++|+|||+...                        +..++++.+|...|++++| +.++.++||+.|++|++||+
T Consensus       220 s~s~D~tiriwd~~~~------------------------~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~  275 (456)
T KOG0266|consen  220 SGSDDKTLRIWDLKDD------------------------GRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDV  275 (456)
T ss_pred             EecCCceEEEeeccCC------------------------CeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEec
Confidence            9999999999998432                        3457789999999999999 56789999999999999999


Q ss_pred             CCCceeeeeeeC-eeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCC--eeEEEeCCCCCeEEEEE
Q 036314          215 EMGKDLSDIFCG-KALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSW--ISACKWHNKSWFHLISA  291 (347)
Q Consensus       215 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~--v~~v~~s~~~~~~l~s~  291 (347)
                      +++++...+..+ ..+.+++|.++ ++.+++++.|+.|++||+...... ....+.++...  +.++.|+|++. +|+++
T Consensus       276 ~~~~~~~~l~~hs~~is~~~f~~d-~~~l~s~s~d~~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~fsp~~~-~ll~~  352 (456)
T KOG0266|consen  276 RTGECVRKLKGHSDGISGLAFSPD-GNLLVSASYDGTIRVWDLETGSKL-CLKLLSGAENSAPVTSVQFSPNGK-YLLSA  352 (456)
T ss_pred             cCCeEEEeeeccCCceEEEEECCC-CCEEEEcCCCccEEEEECCCCcee-eeecccCCCCCCceeEEEECCCCc-EEEEe
Confidence            999988888754 47889999654 567888899999999999753210 23455566655  89999999996 59999


Q ss_pred             eCCCcEEEEEcCCCccceeecCCCCeEEEE---eec-CCCEEEEccCCceEEEeecc
Q 036314          292 SYDGKVMLWDLRTAWPLSVIDSHKDKVLCA---DWW-RGDSVISGGVDSKLCVSSGV  344 (347)
Q Consensus       292 s~D~~i~lwd~~~~~~~~~~~~h~~~v~~~---~~~-~~~~l~s~s~D~~v~vw~~~  344 (347)
                      +.|+++++||++.+..+..+.+|...++|.   ..+ .+..+.+|+.|+.|.+|+-.
T Consensus       353 ~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~  409 (456)
T KOG0266|consen  353 SLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSS  409 (456)
T ss_pred             cCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCC
Confidence            999999999999999999999998875443   222 47789999999999999865

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=4.2e-31  Score=238.46  Aligned_cols=290  Identities=19%  Similarity=0.290  Sum_probs=229.6

Q ss_pred             CCCcCCceeeccCCCCCEEEEEecCCeEEEEcCC-CeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEecc
Q 036314           20 PSLHDDWVSAVDGSNPGFILTGCYDNLGRVWKAG-GVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFD   98 (347)
Q Consensus        20 ~~~h~~~v~~~~~~~~~~l~sg~~d~~i~iw~~~-~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~   98 (347)
                      ..||...|.+++++++..++..+..+.+++|+.. .+|.+++..-  -+.+..|.|.+    .++++|...|.+.+||+.
T Consensus       369 ~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~~--y~l~~~Fvpgd----~~Iv~G~k~Gel~vfdla  442 (888)
T KOG0306|consen  369 IGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTITCG--YILASKFVPGD----RYIVLGTKNGELQVFDLA  442 (888)
T ss_pred             eccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEeccc--cEEEEEecCCC----ceEEEeccCCceEEEEee
Confidence            4589999999999987766555567899999975 7888877644  57788888844    479999999999999998


Q ss_pred             ccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCC-CCccceeeeccCCCcccccccccc
Q 036314           99 AEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDA-AGNQVSIKKRKGNNQVEEPQLEGE  177 (347)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  177 (347)
                      +..+         +.+.++|++.+.+++.+||++.+++||.|.+|++||..-... .+......             .-.
T Consensus       443 S~~l---------~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~l-------------sl~  500 (888)
T KOG0306|consen  443 SASL---------VETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVL-------------SLK  500 (888)
T ss_pred             hhhh---------hhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceee-------------eec
Confidence            7653         345679999999999999999999999999999998642111 00000000             000


Q ss_pred             ccccccCCccceEEEEe-CCCCeEEEEecCCcEEEEECCCCceeeeeeeCe-eeEEEEeeCCCCcEEEEecCCCcEEEEe
Q 036314          178 AISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFCGK-ALNCIDIGGEGSALIAAGGSDPILRIWD  255 (347)
Q Consensus       178 ~~~~~~~h~~~v~~~~~-~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~la~~~~d~~i~iwd  255 (347)
                      ..+++. -++.|.++.+ |++++|+.+-.|++++||=+.+-+-...+..++ |+.|+++++ ++.++++|+.|.+|++|-
T Consensus       501 ~~rtLe-l~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~-DSklivTgSADKnVKiWG  578 (888)
T KOG0306|consen  501 HTRTLE-LEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISP-DSKLIVTGSADKNVKIWG  578 (888)
T ss_pred             cceEEe-ccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccC-CcCeEEeccCCCceEEec
Confidence            011221 2356778876 688899999999999999887765555555444 899999965 567899999999999999


Q ss_pred             CCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecCCCCeEEEEeec-CCCEEEEccC
Q 036314          256 PRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKVLCADWW-RGDSVISGGV  334 (347)
Q Consensus       256 ~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h~~~v~~~~~~-~~~~l~s~s~  334 (347)
                      +.-+..   ...+-+|.+.|.++.|.|+. +++.|++.|+.|+-||-.+.+.++.+.+|...|+|++-+ +|.+++|+|.
T Consensus       579 LdFGDC---HKS~fAHdDSvm~V~F~P~~-~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~sh  654 (888)
T KOG0306|consen  579 LDFGDC---HKSFFAHDDSVMSVQFLPKT-HLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSH  654 (888)
T ss_pred             cccchh---hhhhhcccCceeEEEEcccc-eeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccC
Confidence            875433   45666899999999999976 579999999999999999999999999999999999986 5889999999


Q ss_pred             CceEEEeec
Q 036314          335 DSKLCVSSG  343 (347)
Q Consensus       335 D~~v~vw~~  343 (347)
                      |.+|++|.-
T Consensus       655 D~sIRlwE~  663 (888)
T KOG0306|consen  655 DKSIRLWER  663 (888)
T ss_pred             CceeEeeec
Confidence            999999963

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=100.00  E-value=2.7e-31  Score=245.25  Aligned_cols=253  Identities=24%  Similarity=0.451  Sum_probs=208.1

Q ss_pred             CCCcCCceeeccCCC-CCEEEEEecCCeEEEEcC-CCeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEec
Q 036314           20 PSLHDDWVSAVDGSN-PGFILTGCYDNLGRVWKA-GGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKF   97 (347)
Q Consensus        20 ~~~h~~~v~~~~~~~-~~~l~sg~~d~~i~iw~~-~~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~   97 (347)
                      +.||.+.|+++++.. +.+|++|+.|.++|+||. .|.|++++.+|+..|.++...+      ..+++||.|.+|++|++
T Consensus       245 l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~------~~~~sgs~D~tVkVW~v  318 (537)
T KOG0274|consen  245 LVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTIDP------FLLVSGSRDNTVKVWDV  318 (537)
T ss_pred             ccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEccC------ceEeeccCCceEEEEec
Confidence            679999999999874 679999999999999996 5899999999999999998755      35788999999999999


Q ss_pred             cccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCcccccccccc
Q 036314           98 DAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGE  177 (347)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (347)
                      +++.         .+.++.+|.++|+++.++  +.++++|+.|++|++||+..                         ++
T Consensus       319 ~n~~---------~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~-------------------------~~  362 (537)
T KOG0274|consen  319 TNGA---------CLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRT-------------------------GK  362 (537)
T ss_pred             cCcc---------eEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhh-------------------------ce
Confidence            8764         566788899999999987  78999999999999999874                         46


Q ss_pred             ccccccCCccceEEEEeCCCCeEEEEecCCcEEEEECCCC-ceeeeeeeCee-eEEEEeeCCCCcEEEEecCCCcEEEEe
Q 036314          178 AISTLVGHTQCVSSVVWPQQETIYSASWDHSVRTWDVEMG-KDLSDIFCGKA-LNCIDIGGEGSALIAAGGSDPILRIWD  255 (347)
Q Consensus       178 ~~~~~~~h~~~v~~~~~~~~~~l~s~s~dg~v~vwd~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~d~~i~iwd  255 (347)
                      ++.++.+|+..|.++.+.....+++|+.|++|++||+++. +++..+..+.. +..+.+   ..+++.+++.|++|++||
T Consensus       363 cl~sl~gH~~~V~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~---~~~~Lvs~~aD~~Ik~WD  439 (537)
T KOG0274|consen  363 CLKSLSGHTGRVYSLIVDSENRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL---RDNFLVSSSADGTIKLWD  439 (537)
T ss_pred             eeeeecCCcceEEEEEecCcceEEeeeeccceEeecCCchhhhhhhhcCCccccccccc---ccceeEeccccccEEEee
Confidence            7889999999999997643388999999999999999998 78777765443 334433   235788999999999999


Q ss_pred             CCCCCCCCCeEEecC-CCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecCCC-CeEEEEee
Q 036314          256 PRKPGTSAPVFQFSS-HNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHK-DKVLCADW  323 (347)
Q Consensus       256 ~~~~~~~~~~~~~~~-h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h~-~~v~~~~~  323 (347)
                      ....+   .+..+.+ |...|.++.+. +  ..+++++.|+++++||++.++....+..+. .....+++
T Consensus       440 ~~~~~---~~~~~~~~~~~~v~~l~~~-~--~~il~s~~~~~~~l~dl~~~~~~~~l~~~~~~~~~~~~~  503 (537)
T KOG0274|consen  440 AEEGE---CLRTLEGRHVGGVSALALG-K--EEILCSSDDGSVKLWDLRSGTLIRTLLSTDLGATWGVAP  503 (537)
T ss_pred             cccCc---eeeeeccCCcccEEEeecC-c--ceEEEEecCCeeEEEecccCchhhhhhhccccccccccc
Confidence            87533   3667777 67889888886 1  358999999999999999998877664443 33344554

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=4.5e-31  Score=208.55  Aligned_cols=243  Identities=24%  Similarity=0.289  Sum_probs=199.9

Q ss_pred             eEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEE
Q 036314           55 VCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMV  134 (347)
Q Consensus        55 ~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l  134 (347)
                      +..+++..|+++|.++.|..++    .+.++++.|.+||+|+...+.         .+++..+|...|..++.+.|+..|
T Consensus         8 kr~~~l~~~qgaV~avryN~dG----nY~ltcGsdrtvrLWNp~rg~---------liktYsghG~EVlD~~~s~Dnskf   74 (307)
T KOG0316|consen    8 KRLSILDCAQGAVRAVRYNVDG----NYCLTCGSDRTVRLWNPLRGA---------LIKTYSGHGHEVLDAALSSDNSKF   74 (307)
T ss_pred             hhceeecccccceEEEEEccCC----CEEEEcCCCceEEeecccccc---------eeeeecCCCceeeecccccccccc
Confidence            3456789999999999997744    478999999999999976654         567889999999999999999999


Q ss_pred             EEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEeCC-CCeEEEEecCCcEEEEE
Q 036314          135 CSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWPQ-QETIYSASWDHSVRTWD  213 (347)
Q Consensus       135 ~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~l~s~s~dg~v~vwd  213 (347)
                      ++|+.|..|.+||++++                         +.++.+.+|...|+.+.|.+ ...++|||.|.++++||
T Consensus        75 ~s~GgDk~v~vwDV~TG-------------------------kv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wD  129 (307)
T KOG0316|consen   75 ASCGGDKAVQVWDVNTG-------------------------KVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWD  129 (307)
T ss_pred             ccCCCCceEEEEEcccC-------------------------eeeeecccccceeeEEEecCcceEEEeccccceeEEEE
Confidence            99999999999999864                         45778999999999999975 45689999999999999


Q ss_pred             CCCC--ceeeeeee-CeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEE
Q 036314          214 VEMG--KDLSDIFC-GKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLIS  290 (347)
Q Consensus       214 ~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s  290 (347)
                      .++.  +++..+.. ...+..+++.   ...|++|+.||++|.||+|.+..   ...  --..+|+++.|++++.. ++.
T Consensus       130 CRS~s~ePiQildea~D~V~Si~v~---~heIvaGS~DGtvRtydiR~G~l---~sD--y~g~pit~vs~s~d~nc-~La  200 (307)
T KOG0316|consen  130 CRSRSFEPIQILDEAKDGVSSIDVA---EHEIVAGSVDGTVRTYDIRKGTL---SSD--YFGHPITSVSFSKDGNC-SLA  200 (307)
T ss_pred             cccCCCCccchhhhhcCceeEEEec---ccEEEeeccCCcEEEEEeeccee---ehh--hcCCcceeEEecCCCCE-EEE
Confidence            9764  33333322 2356777763   35788999999999999996421   122  23457999999999975 777


Q ss_pred             EeCCCcEEEEEcCCCccceeecCCCCeEEEEeec---CCCEEEEccCCceEEEeecc
Q 036314          291 ASYDGKVMLWDLRTAWPLSVIDSHKDKVLCADWW---RGDSVISGGVDSKLCVSSGV  344 (347)
Q Consensus       291 ~s~D~~i~lwd~~~~~~~~~~~~h~~~v~~~~~~---~~~~l~s~s~D~~v~vw~~~  344 (347)
                      ++.|+++++.|-++|+.++.+.||++.-+.++..   ....+++||.||.|.+|+.+
T Consensus       201 ~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLv  257 (307)
T KOG0316|consen  201 SSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLV  257 (307)
T ss_pred             eeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEec
Confidence            8999999999999999999999999887766553   35579999999999999976

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=100.00  E-value=4.2e-31  Score=226.40  Aligned_cols=262  Identities=21%  Similarity=0.322  Sum_probs=209.4

Q ss_pred             eeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCc-cccceeeeeeccccceEEEEEeCCC-CEEEEe
Q 036314           60 LEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHP-KKIRSFKILRGHKASVHSIAAETSG-NMVCSG  137 (347)
Q Consensus        60 l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~-~~~~~~~~~~~h~~~V~~v~~s~~~-~~l~sg  137 (347)
                      .-.|.+.|+.++..|...   ..+|+.+..+.|.|||+..-.-.... ...++-.+|.+|++.-.+++|++.. -.++++
T Consensus       120 ~i~h~gEVnRaRymPQnp---~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~  196 (422)
T KOG0264|consen  120 KINHDGEVNRARYMPQNP---NIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSG  196 (422)
T ss_pred             eccCCccchhhhhCCCCC---cEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeec
Confidence            346999999999999765   47899999999999998754322111 1334555789999988889998875 488999


Q ss_pred             eCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEeC--CCCeEEEEecCCcEEEEECC
Q 036314          138 SWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWP--QQETIYSASWDHSVRTWDVE  215 (347)
Q Consensus       138 s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~l~s~s~dg~v~vwd~~  215 (347)
                      +.|++|.+||+.........                  -.....+.+|+..|..++|.  ....+++++.|+.+.|||+|
T Consensus       197 ~~d~~i~lwdi~~~~~~~~~------------------~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R  258 (422)
T KOG0264|consen  197 SDDHTICLWDINAESKEDKV------------------VDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTR  258 (422)
T ss_pred             cCCCcEEEEeccccccCCcc------------------ccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcC
Confidence            99999999998754321110                  12234678899999999984  44578999999999999999


Q ss_pred             CC--ceeeeee-eCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEe
Q 036314          216 MG--KDLSDIF-CGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISAS  292 (347)
Q Consensus       216 ~~--~~~~~~~-~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s  292 (347)
                      ++  +..+... +..++.|++|.|-+..+||+|+.|++|++||+|+...  ++.++.+|.+.|..|.|+|.....|||++
T Consensus       259 ~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~--~lh~~e~H~dev~~V~WSPh~etvLASSg  336 (422)
T KOG0264|consen  259 SNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNK--PLHTFEGHEDEVFQVEWSPHNETVLASSG  336 (422)
T ss_pred             CCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhccc--CceeccCCCcceEEEEeCCCCCceeEecc
Confidence            53  3323332 3568999999999999999999999999999997543  68899999999999999999999999999


Q ss_pred             CCCcEEEEEcCCC--------------ccceeecCCCCeEEEEeecC--CCEEEEccCCceEEEeecc
Q 036314          293 YDGKVMLWDLRTA--------------WPLSVIDSHKDKVLCADWWR--GDSVISGGVDSKLCVSSGV  344 (347)
Q Consensus       293 ~D~~i~lwd~~~~--------------~~~~~~~~h~~~v~~~~~~~--~~~l~s~s~D~~v~vw~~~  344 (347)
                      .|++++|||+..-              +.+....||++.|..+.|.|  ...|+|++.|+.+.||+-.
T Consensus       337 ~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  337 TDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA  404 (422)
T ss_pred             cCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence            9999999999752              12356789999999999986  3369999999999999865

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.98  E-value=2.3e-31  Score=212.33  Aligned_cols=241  Identities=21%  Similarity=0.352  Sum_probs=196.7

Q ss_pred             cCCceeeccCC--CCCEEEEEecCCeEEEEcCC--CeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEecc
Q 036314           23 HDDWVSAVDGS--NPGFILTGCYDNLGRVWKAG--GVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFD   98 (347)
Q Consensus        23 h~~~v~~~~~~--~~~~l~sg~~d~~i~iw~~~--~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~   98 (347)
                      -.+.+-.++.+  ..+.+++++.||.+||||.+  ...++.++.|..+|.++.+.+..+   ..++++|.|++||+|+..
T Consensus        59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r---~~~ltsSWD~TiKLW~~~  135 (311)
T KOG0277|consen   59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRR---RIFLTSSWDGTIKLWDPN  135 (311)
T ss_pred             cccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccc---eeEEeeccCCceEeecCC
Confidence            35667777766  35689999999999999964  456788999999999999987644   467788999999999975


Q ss_pred             ccccccCccccceeeeeeccccceEEEEEeCC-CCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCcccccccccc
Q 036314           99 AEELVNHPKKIRSFKILRGHKASVHSIAAETS-GNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGE  177 (347)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~-~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (347)
                      -+         ..+.++.||..-|..++|+|. .++++++|.|++.++||++..                        ++
T Consensus       136 r~---------~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~------------------------gk  182 (311)
T KOG0277|consen  136 RP---------NSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSP------------------------GK  182 (311)
T ss_pred             CC---------cceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCC------------------------Cc
Confidence            43         456789999999999999985 589999999999999998653                        11


Q ss_pred             ccccccCCccceEEEEeC--CCCeEEEEecCCcEEEEECCCCc-eeeeeeeC-eeeEEEEeeCCCCcEEEEecCCCcEEE
Q 036314          178 AISTLVGHTQCVSSVVWP--QQETIYSASWDHSVRTWDVEMGK-DLSDIFCG-KALNCIDIGGEGSALIAAGGSDPILRI  253 (347)
Q Consensus       178 ~~~~~~~h~~~v~~~~~~--~~~~l~s~s~dg~v~vwd~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~la~~~~d~~i~i  253 (347)
                      .+ .+..|...+.+.-|+  +...|++++-|+.|++||++.-+ ++..+..+ -.+..+.++|....++|++++|-+++|
T Consensus       183 ~~-~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~ri  261 (311)
T KOG0277|consen  183 FM-SIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRI  261 (311)
T ss_pred             ee-EEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEe
Confidence            12 256788888888885  56789999999999999998643 34445433 368899999888889999999999999


Q ss_pred             EeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEc
Q 036314          254 WDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDL  302 (347)
Q Consensus       254 wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~  302 (347)
                      ||...+.  ..+.+...|+..|..+.||+-.+.++|+++.|+.+.||+.
T Consensus       262 w~~~~~d--s~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  262 WDPERQD--SAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             cccccch--hhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence            9987543  2355667899999999999988888999999999999985

>PTZ00421 coronin; Provisional

Probab=99.98  E-value=1.4e-29  Score=233.33  Aligned_cols=268  Identities=18%  Similarity=0.208  Sum_probs=193.2

Q ss_pred             CceeeccCC-CCCEEEEEecCCeEEEEcCCCe-EE-------------EEeeccCCceEEEEEeecCCCceEEEEEccCC
Q 036314           25 DWVSAVDGS-NPGFILTGCYDNLGRVWKAGGV-CT-------------HILEGHCGAVSSVNIIKSDGLKYVTVATASKD   89 (347)
Q Consensus        25 ~~v~~~~~~-~~~~l~sg~~d~~i~iw~~~~~-~~-------------~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~D   89 (347)
                      ..|+....+ ++..+++++.+..+..|+..|. .+             ..+.+|.+.|.+++|+|.++   ..|++|+.|
T Consensus        21 ~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~---~~LaSgS~D   97 (493)
T PTZ00421         21 LNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDP---QKLFTASED   97 (493)
T ss_pred             eccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCC---CEEEEEeCC
Confidence            344444444 3456788888888888875432 21             14789999999999998432   369999999


Q ss_pred             CcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCC-CEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCc
Q 036314           90 QTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSG-NMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQ  168 (347)
Q Consensus        90 g~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~-~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~  168 (347)
                      ++|++||+..+....  ....++..+.+|...|.+++|+|++ ++|++++.|++|+|||++++                 
T Consensus        98 gtIkIWdi~~~~~~~--~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg-----------------  158 (493)
T PTZ00421         98 GTIMGWGIPEEGLTQ--NISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERG-----------------  158 (493)
T ss_pred             CEEEEEecCCCcccc--ccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCC-----------------
Confidence            999999997643211  1123456788999999999999986 69999999999999998753                 


Q ss_pred             cccccccccccccccCCccceEEEEe-CCCCeEEEEecCCcEEEEECCCCceeeeeeeCe--eeEEEEeeCCCCcEEEEe
Q 036314          169 VEEPQLEGEAISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFCGK--ALNCIDIGGEGSALIAAG  245 (347)
Q Consensus       169 ~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~la~~  245 (347)
                              ..+..+.+|...|.++.| +++..|++++.|++|++||+++++.+..+..+.  ....+.+.+++..++++|
T Consensus       159 --------~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G  230 (493)
T PTZ00421        159 --------KAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLG  230 (493)
T ss_pred             --------eEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEe
Confidence                    234466789999999998 578889999999999999999988777665432  223445555555455444


Q ss_pred             ---cCCCcEEEEeCCCCCCCCCeEEecCCC-CCeeEEEeCCCCCeEEEEEe-CCCcEEEEEcCCCccceeecC-CCCeEE
Q 036314          246 ---GSDPILRIWDPRKPGTSAPVFQFSSHN-SWISACKWHNKSWFHLISAS-YDGKVMLWDLRTAWPLSVIDS-HKDKVL  319 (347)
Q Consensus       246 ---~~d~~i~iwd~~~~~~~~~~~~~~~h~-~~v~~v~~s~~~~~~l~s~s-~D~~i~lwd~~~~~~~~~~~~-h~~~v~  319 (347)
                         +.|+.|++||++....  +......+. ..+....|++++.. |++++ .|+.|++||+++++....... +...+.
T Consensus       231 ~s~s~Dr~VklWDlr~~~~--p~~~~~~d~~~~~~~~~~d~d~~~-L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~  307 (493)
T PTZ00421        231 CSKSQQRQIMLWDTRKMAS--PYSTVDLDQSSALFIPFFDEDTNL-LYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHK  307 (493)
T ss_pred             cCCCCCCeEEEEeCCCCCC--ceeEeccCCCCceEEEEEcCCCCE-EEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCc
Confidence               3589999999986432  333333333 34566778998865 66555 699999999998877665433 345566


Q ss_pred             EEeecC
Q 036314          320 CADWWR  325 (347)
Q Consensus       320 ~~~~~~  325 (347)
                      +++|.|
T Consensus       308 g~~~~p  313 (493)
T PTZ00421        308 GLCMMP  313 (493)
T ss_pred             ceEecc
Confidence            777754

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.98  E-value=1.2e-29  Score=229.32  Aligned_cols=280  Identities=21%  Similarity=0.354  Sum_probs=218.2

Q ss_pred             CcCCceeeccCC-CCCEEEEEecC-CeEEEEcCC-CeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEecc
Q 036314           22 LHDDWVSAVDGS-NPGFILTGCYD-NLGRVWKAG-GVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFD   98 (347)
Q Consensus        22 ~h~~~v~~~~~~-~~~~l~sg~~d-~~i~iw~~~-~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~   98 (347)
                      .-...|.++.++ .|+.||-||.. |++-+|+.. ...+...+||-..+++++.+|++    ..+|||++||.||+||..
T Consensus       305 is~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDg----q~iaTG~eDgKVKvWn~~  380 (893)
T KOG0291|consen  305 ISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDG----QLIATGAEDGKVKVWNTQ  380 (893)
T ss_pred             cccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCC----cEEEeccCCCcEEEEecc
Confidence            334667788876 67899998876 799999864 34566688999999999999944    579999999999999987


Q ss_pred             ccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccc
Q 036314           99 AEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEA  178 (347)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (347)
                      ++-         |+.+|..|++.|+.+.|+..|+.+++.|.||+||.||+....                         .
T Consensus       381 Sgf---------C~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYr-------------------------N  426 (893)
T KOG0291|consen  381 SGF---------CFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYR-------------------------N  426 (893)
T ss_pred             Cce---------EEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccc-------------------------e
Confidence            764         678899999999999999999999999999999999986532                         1


Q ss_pred             cccccCCc-cceEEEEe-CCCCeEEEEecCC-cEEEEECCCCceeeeeeeC-eeeEEEEeeCCCCcEEEEecCCCcEEEE
Q 036314          179 ISTLVGHT-QCVSSVVW-PQQETIYSASWDH-SVRTWDVEMGKDLSDIFCG-KALNCIDIGGEGSALIAAGGSDPILRIW  254 (347)
Q Consensus       179 ~~~~~~h~-~~v~~~~~-~~~~~l~s~s~dg-~v~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~la~~~~d~~i~iw  254 (347)
                      .+++.... -...+++. |.|+.+..|+.|. .|.+|++++|+.+-.+..+ .++.++.|++.+ .++++++.|.+||+|
T Consensus       427 fRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~-~~LaS~SWDkTVRiW  505 (893)
T KOG0291|consen  427 FRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDG-SLLASGSWDKTVRIW  505 (893)
T ss_pred             eeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEcccc-CeEEeccccceEEEE
Confidence            23333322 12345555 4577777777776 4899999999987777654 478999997654 589999999999999


Q ss_pred             eCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecC--------------------C
Q 036314          255 DPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDS--------------------H  314 (347)
Q Consensus       255 d~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~--------------------h  314 (347)
                      |+-....  ..-++ .+..-+..++|.|+|.. |+++..||.|.+||+..+..+..+.+                    .
T Consensus       506 ~if~s~~--~vEtl-~i~sdvl~vsfrPdG~e-laVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~  581 (893)
T KOG0291|consen  506 DIFSSSG--TVETL-EIRSDVLAVSFRPDGKE-LAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAK  581 (893)
T ss_pred             EeeccCc--eeeeE-eeccceeEEEEcCCCCe-EEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhccc
Confidence            9875322  22333 35667899999999975 99999999999999987654432221                    1


Q ss_pred             CCeEEEEeec-CCCEEEEccCCceEEEeecc
Q 036314          315 KDKVLCADWW-RGDSVISGGVDSKLCVSSGV  344 (347)
Q Consensus       315 ~~~v~~~~~~-~~~~l~s~s~D~~v~vw~~~  344 (347)
                      ......+.|+ +|..+++||..+.||+++.+
T Consensus       582 ~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~  612 (893)
T KOG0291|consen  582 GKTFTTICYSADGKCILAGGESNSICIYDVP  612 (893)
T ss_pred             CCceEEEEEcCCCCEEEecCCcccEEEEECc
Confidence            2346788897 68899999999999999876

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.98  E-value=1.6e-30  Score=224.56  Aligned_cols=272  Identities=20%  Similarity=0.281  Sum_probs=215.8

Q ss_pred             CCceeeccCCC--C-CEEEEEecCCeEEEEcCCCe-EEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccc
Q 036314           24 DDWVSAVDGSN--P-GFILTGCYDNLGRVWKAGGV-CTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDA   99 (347)
Q Consensus        24 ~~~v~~~~~~~--~-~~l~sg~~d~~i~iw~~~~~-~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~   99 (347)
                      .+.|++++|++  + ++.+|+|.  .++||+..+. ..+.+......|.++.|-.    ++..||+|.+.|.|++||+.+
T Consensus        26 ~~~vssl~fsp~~P~d~aVt~S~--rvqly~~~~~~~~k~~srFk~~v~s~~fR~----DG~LlaaGD~sG~V~vfD~k~   99 (487)
T KOG0310|consen   26 HNSVSSLCFSPKHPYDFAVTSSV--RVQLYSSVTRSVRKTFSRFKDVVYSVDFRS----DGRLLAAGDESGHVKVFDMKS   99 (487)
T ss_pred             cCcceeEecCCCCCCceEEeccc--EEEEEecchhhhhhhHHhhccceeEEEeec----CCeEEEccCCcCcEEEecccc
Confidence            46799999984  3 46666664  7889986543 3345666778899999977    445799999999999999654


Q ss_pred             cccccCccccceeeeeeccccceEEEEEeCCC-CEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccc
Q 036314          100 EELVNHPKKIRSFKILRGHKASVHSIAAETSG-NMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEA  178 (347)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~-~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (347)
                      ..         .+..+.+|+.+|+.+.|+|++ ..+++|+.|+.+++||+.+.                         ..
T Consensus       100 r~---------iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a-------------------------~v  145 (487)
T KOG0310|consen  100 RV---------ILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTA-------------------------YV  145 (487)
T ss_pred             HH---------HHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCc-------------------------EE
Confidence            32         345678999999999999875 57789999999999998752                         22


Q ss_pred             cccccCCccceEEEEeC--CCCeEEEEecCCcEEEEECCCC-ceeeeeeeCeeeEEEEeeCCCCcEEEEecCCCcEEEEe
Q 036314          179 ISTLVGHTQCVSSVVWP--QQETIYSASWDHSVRTWDVEMG-KDLSDIFCGKALNCIDIGGEGSALIAAGGSDPILRIWD  255 (347)
Q Consensus       179 ~~~~~~h~~~v~~~~~~--~~~~l~s~s~dg~v~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd  255 (347)
                      ...+.+|+++|++..|.  ++..++|||+||+|++||++.. ..+..+.++.++..+.+-|++ .+||+++ .+.+++||
T Consensus       146 ~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsg-s~iasAg-Gn~vkVWD  223 (487)
T KOG0310|consen  146 QAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSG-SLIASAG-GNSVKVWD  223 (487)
T ss_pred             EEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCC-CEEEEcC-CCeEEEEE
Confidence            34778999999999984  3457999999999999999886 777888888899888776654 4667665 57899999


Q ss_pred             CCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecCCCCeEEEEeecCCC-EEEEccC
Q 036314          256 PRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKVLCADWWRGD-SVISGGV  334 (347)
Q Consensus       256 ~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~s~  334 (347)
                      +-.+++  .+..+..|...|+|+++..++. .|+||+.|+.+++||+.+-+.+..+.. .++|++++.+|++ .++.|..
T Consensus       224 l~~G~q--ll~~~~~H~KtVTcL~l~s~~~-rLlS~sLD~~VKVfd~t~~Kvv~s~~~-~~pvLsiavs~dd~t~viGms  299 (487)
T KOG0310|consen  224 LTTGGQ--LLTSMFNHNKTVTCLRLASDST-RLLSGSLDRHVKVFDTTNYKVVHSWKY-PGPVLSIAVSPDDQTVVIGMS  299 (487)
T ss_pred             ecCCce--ehhhhhcccceEEEEEeecCCc-eEeecccccceEEEEccceEEEEeeec-ccceeeEEecCCCceEEEecc
Confidence            975443  2444556999999999999885 599999999999999887777777764 7899999998754 6889989


Q ss_pred             CceEEEe
Q 036314          335 DSKLCVS  341 (347)
Q Consensus       335 D~~v~vw  341 (347)
                      ||.+.+-
T Consensus       300 nGlv~~r  306 (487)
T KOG0310|consen  300 NGLVSIR  306 (487)
T ss_pred             cceeeee
Confidence            9988765

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=3.8e-30  Score=211.57  Aligned_cols=291  Identities=22%  Similarity=0.358  Sum_probs=222.9

Q ss_pred             CCCCcCCceeeccCCC-CCEEEEEecCCeEEEEcCC-CeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEe
Q 036314           19 EPSLHDDWVSAVDGSN-PGFILTGCYDNLGRVWKAG-GVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWK   96 (347)
Q Consensus        19 ~~~~h~~~v~~~~~~~-~~~l~sg~~d~~i~iw~~~-~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd   96 (347)
                      +..||++.|+.++... ..++.|+|.|.+.+||.++ |.|+..+.||.+.|++|+|++++    ..++++|.|++..||.
T Consensus       143 e~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~----~L~lTaSGD~taHIW~  218 (481)
T KOG0300|consen  143 ELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSG----LLLLTASGDETAHIWK  218 (481)
T ss_pred             hhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEecccc----ceEEEccCCcchHHHH
Confidence            3569999999998653 3489999999999999974 89999999999999999999844    4789999999999997


Q ss_pred             c------ccccc------------cc-------------CccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEE
Q 036314           97 F------DAEEL------------VN-------------HPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISL  145 (347)
Q Consensus        97 ~------~~~~~------------~~-------------~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~i  145 (347)
                      .      ..+..            ..             .+.-..++..|.+|.+.|.+..|-..|+.++++|+|.+..+
T Consensus       219 ~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnl  298 (481)
T KOG0300|consen  219 AAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANL  298 (481)
T ss_pred             HhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeecccccee
Confidence            3      21100            00             00011345578899999999999889999999999999999


Q ss_pred             EecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEE-eCCCCeEEEEecCCcEEEEECCCCcee-eee
Q 036314          146 WRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVV-WPQQETIYSASWDHSVRTWDVEMGKDL-SDI  223 (347)
Q Consensus       146 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~-~~~~~~l~s~s~dg~v~vwd~~~~~~~-~~~  223 (347)
                      ||++++                         ..+..+.||.....-+. .|.++.+++.|.|.++++||.+....- ..+
T Consensus       299 wDVEtg-------------------------e~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VF  353 (481)
T KOG0300|consen  299 WDVETG-------------------------EVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVF  353 (481)
T ss_pred             eeeccC-------------------------ceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeee
Confidence            999875                         34567788887776554 466777899999999999999854322 223


Q ss_pred             ee-CeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEc
Q 036314          224 FC-GKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDL  302 (347)
Q Consensus       224 ~~-~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~  302 (347)
                      +. ...++...|..++  .+++|++|.+|++||+++...  ++.++. -.+.++.++.+..+ ..+|--..+..|+|||+
T Consensus       354 QGHtdtVTS~vF~~dd--~vVSgSDDrTvKvWdLrNMRs--plATIR-tdS~~NRvavs~g~-~iIAiPhDNRqvRlfDl  427 (481)
T KOG0300|consen  354 QGHTDTVTSVVFNTDD--RVVSGSDDRTVKVWDLRNMRS--PLATIR-TDSPANRVAVSKGH-PIIAIPHDNRQVRLFDL  427 (481)
T ss_pred             cccccceeEEEEecCC--ceeecCCCceEEEeeeccccC--cceeee-cCCccceeEeecCC-ceEEeccCCceEEEEec
Confidence            32 2357777785543  578999999999999986533  344442 44567888887655 35777778889999999


Q ss_pred             CCCcc----ceeecCCCCeEEEEeec---CCCEEEEccCCceEEEeecc
Q 036314          303 RTAWP----LSVIDSHKDKVLCADWW---RGDSVISGGVDSKLCVSSGV  344 (347)
Q Consensus       303 ~~~~~----~~~~~~h~~~v~~~~~~---~~~~l~s~s~D~~v~vw~~~  344 (347)
                      +....    -..-++|...|.|++|.   |-+-|.++|.|..+.=|..+
T Consensus       428 nG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in  476 (481)
T KOG0300|consen  428 NGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKIN  476 (481)
T ss_pred             CCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEec
Confidence            85422    22347999999999996   45569999999999999765

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=1.2e-28  Score=193.87  Aligned_cols=286  Identities=22%  Similarity=0.313  Sum_probs=220.1

Q ss_pred             CCcCCceeeccCC-CCCEEEEEecCCeEEEEcC------C-C---------eEEEEeeccCCceEEEEEeecCCCceEEE
Q 036314           21 SLHDDWVSAVDGS-NPGFILTGCYDNLGRVWKA------G-G---------VCTHILEGHCGAVSSVNIIKSDGLKYVTV   83 (347)
Q Consensus        21 ~~h~~~v~~~~~~-~~~~l~sg~~d~~i~iw~~------~-~---------~~~~~l~~h~~~V~~v~~~~~~~~~~~~l   83 (347)
                      ...+..|.+++|. .+++-+.||...+.||-.-      . +         ...+.-+.|.+.|.+.+|+|.+    ..|
T Consensus        29 l~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~g----eli  104 (350)
T KOG0641|consen   29 LEDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCG----ELI  104 (350)
T ss_pred             ecchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCcc----CeE
Confidence            3567889999997 5778889998899998631      1 0         0112345789999999999954    479


Q ss_pred             EEccCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCC----CCEEEEee-CCCcEEEEecCCCCCCCccc
Q 036314           84 ATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETS----GNMVCSGS-WDCTISLWRTNDSDAAGNQV  158 (347)
Q Consensus        84 ~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~----~~~l~sgs-~Dg~I~iwd~~~~~~~~~~~  158 (347)
                      ++||+|.+|++--++..++-..    ..--.|.-|.+.|+.++|-.+    +..|++++ .|+.|.+=|...        
T Consensus       105 atgsndk~ik~l~fn~dt~~~~----g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~--------  172 (350)
T KOG0641|consen  105 ATGSNDKTIKVLPFNADTCNAT----GHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGR--------  172 (350)
T ss_pred             EecCCCceEEEEeccccccccc----CcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCC--------
Confidence            9999999999988775543221    111246779999999999543    45666654 466666666543        


Q ss_pred             eeeeccCCCccccccccccccccccCCccceEEEEeCCCCeEEEEecCCcEEEEECCCCceeeeeee--------CeeeE
Q 036314          159 SIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWPQQETIYSASWDHSVRTWDVEMGKDLSDIFC--------GKALN  230 (347)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~--------~~~~~  230 (347)
                                       ++.+..+.+|++-|.++..=++-++++|+.|.+|+.||++-+.++..+..        ...+.
T Consensus       173 -----------------g~~~~a~sghtghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessava  235 (350)
T KOG0641|consen  173 -----------------GQGFHALSGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVA  235 (350)
T ss_pred             -----------------CCcceeecCCcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeE
Confidence                             34466788999999888633668999999999999999998888776632        13567


Q ss_pred             EEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCC----c
Q 036314          231 CIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTA----W  306 (347)
Q Consensus       231 ~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~----~  306 (347)
                      .+++.| .++++++|..|....+||++.   .++++.+..|...|.++.|+|.. ++|++||+|-.|++=|+..-    .
T Consensus       236 av~vdp-sgrll~sg~~dssc~lydirg---~r~iq~f~phsadir~vrfsp~a-~yllt~syd~~ikltdlqgdla~el  310 (350)
T KOG0641|consen  236 AVAVDP-SGRLLASGHADSSCMLYDIRG---GRMIQRFHPHSADIRCVRFSPGA-HYLLTCSYDMKIKLTDLQGDLAHEL  310 (350)
T ss_pred             EEEECC-CcceeeeccCCCceEEEEeeC---CceeeeeCCCccceeEEEeCCCc-eEEEEecccceEEEeecccchhhcC
Confidence            777765 467999999999999999985   34688999999999999999987 56999999999999998632    2


Q ss_pred             cceeecCCCCeEEEEeecCCC-EEEEccCCceEEEeecc
Q 036314          307 PLSVIDSHKDKVLCADWWRGD-SVISGGVDSKLCVSSGV  344 (347)
Q Consensus       307 ~~~~~~~h~~~v~~~~~~~~~-~l~s~s~D~~v~vw~~~  344 (347)
                      ++.+...|++++..+.|+|.. .+++.|.|.++.+|..+
T Consensus       311 ~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  311 PIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN  349 (350)
T ss_pred             ceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence            334456799999999999866 59999999999999864

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=2.6e-29  Score=205.22  Aligned_cols=277  Identities=21%  Similarity=0.323  Sum_probs=207.1

Q ss_pred             CCcCCCCCcCCceeeccCCC--CCEEEEEecCCeEEEEcCC--CeE-EEEeeccCCceEEEEEeecCCCceEEEEEccCC
Q 036314           15 QKEEEPSLHDDWVSAVDGSN--PGFILTGCYDNLGRVWKAG--GVC-THILEGHCGAVSSVNIIKSDGLKYVTVATASKD   89 (347)
Q Consensus        15 ~~~~~~~~h~~~v~~~~~~~--~~~l~sg~~d~~i~iw~~~--~~~-~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~D   89 (347)
                      +..+.+...++.|.+++||+  +.+++.||+|++||+|++.  |.. -+....|.++|.++.|+.++    ..+++|+.|
T Consensus        18 kd~ev~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsddg----skVf~g~~D   93 (347)
T KOG0647|consen   18 KDYEVPNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDG----SKVFSGGCD   93 (347)
T ss_pred             cceecCCCcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCC----ceEEeeccC
Confidence            44556777889999999996  4578899999999999864  322 35577899999999999854    368999999


Q ss_pred             CcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCC--CEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCC
Q 036314           90 QTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSG--NMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNN  167 (347)
Q Consensus        90 g~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~--~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~  167 (347)
                      +++++||+.+++.          ..+..|.++|.++.|-+..  ..|+|||+|+|||.||.+....              
T Consensus        94 k~~k~wDL~S~Q~----------~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~p--------------  149 (347)
T KOG0647|consen   94 KQAKLWDLASGQV----------SQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNP--------------  149 (347)
T ss_pred             CceEEEEccCCCe----------eeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCe--------------
Confidence            9999999998753          3567899999999986654  4899999999999999875321              


Q ss_pred             ccccccccccccccccCCccceEEEEeCCCCeEEEEecCCcEEEEECCCCcee-eeee--eCeeeEEEEeeCCCCcEEEE
Q 036314          168 QVEEPQLEGEAISTLVGHTQCVSSVVWPQQETIYSASWDHSVRTWDVEMGKDL-SDIF--CGKALNCIDIGGEGSALIAA  244 (347)
Q Consensus       168 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~la~  244 (347)
                                 +.++.-. +.++++.. ...+++.+..++.|.+|+++.+... +.+.  ....+.|+++..+.. ..|.
T Consensus       150 -----------v~t~~LP-eRvYa~Dv-~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~-~~al  215 (347)
T KOG0647|consen  150 -----------VATLQLP-ERVYAADV-LYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKD-GFAL  215 (347)
T ss_pred             -----------eeeeecc-ceeeehhc-cCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCC-ceEe
Confidence                       1111111 12222211 2346777888999999999765322 2221  234577888876554 4488


Q ss_pred             ecCCCcEEEEeCCCCCCCCCeEEecCCCC---------CeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecCCC
Q 036314          245 GGSDPILRIWDPRKPGTSAPVFQFSSHNS---------WISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHK  315 (347)
Q Consensus       245 ~~~d~~i~iwd~~~~~~~~~~~~~~~h~~---------~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h~  315 (347)
                      |+-.|.+.+..+..+.+ ..-++|..|..         .|++++|+|.-+ .|+|++.||++..||-.....+++.+.|.
T Consensus       216 GsiEGrv~iq~id~~~~-~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hg-tlvTaGsDGtf~FWDkdar~kLk~s~~~~  293 (347)
T KOG0647|consen  216 GSIEGRVAIQYIDDPNP-KDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHG-TLVTAGSDGTFSFWDKDARTKLKTSETHP  293 (347)
T ss_pred             eeecceEEEEecCCCCc-cCceeEEEeccCCCCCCceEEecceEeecccc-eEEEecCCceEEEecchhhhhhhccCcCC
Confidence            99999999998876433 45677777773         478899999765 59999999999999998877888888999


Q ss_pred             CeEEEEeec-CCCEEE-EccCC
Q 036314          316 DKVLCADWW-RGDSVI-SGGVD  335 (347)
Q Consensus       316 ~~v~~~~~~-~~~~l~-s~s~D  335 (347)
                      .+|.|..|+ +|.++| +.|.|
T Consensus       294 qpItcc~fn~~G~ifaYA~gYD  315 (347)
T KOG0647|consen  294 QPITCCSFNRNGSIFAYALGYD  315 (347)
T ss_pred             CccceeEecCCCCEEEEEeecc
Confidence            999999996 788765 33445

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.97  E-value=2.3e-29  Score=227.38  Aligned_cols=316  Identities=17%  Similarity=0.269  Sum_probs=235.4

Q ss_pred             CCCCcCCceeeccCC-CCCEEEEEecCCeEEEEcCCC-eEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEe
Q 036314           19 EPSLHDDWVSAVDGS-NPGFILTGCYDNLGRVWKAGG-VCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWK   96 (347)
Q Consensus        19 ~~~~h~~~v~~~~~~-~~~~l~sg~~d~~i~iw~~~~-~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd   96 (347)
                      .++||+..|+.+.|. .|..|||||.|+.|.+||+-+ .-...|.||.+.|+..-|....    ..|++.|.|+.||+||
T Consensus       102 tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~~----~~lvS~sKDs~iK~Wd  177 (888)
T KOG0306|consen  102 TFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLNGD----SFLVSVSKDSMIKFWD  177 (888)
T ss_pred             eecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccCCC----eEEEEeccCceEEEEe
Confidence            367899999999998 577999999999999999744 3456799999999888877622    3688888999999998


Q ss_pred             cccccccc------------------------------------------------------------------------
Q 036314           97 FDAEELVN------------------------------------------------------------------------  104 (347)
Q Consensus        97 ~~~~~~~~------------------------------------------------------------------------  104 (347)
                      +++..+..                                                                        
T Consensus       178 L~tqhCf~Thvd~r~Eiw~l~~~~~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r  257 (888)
T KOG0306|consen  178 LETQHCFETHVDHRGEIWALVLDEKLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDR  257 (888)
T ss_pred             cccceeeeEEecccceEEEEEEecceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCccc
Confidence            66542200                                                                        


Q ss_pred             -------------------------------------C------------------------------------cc-c--
Q 036314          105 -------------------------------------H------------------------------------PK-K--  108 (347)
Q Consensus       105 -------------------------------------~------------------------------------~~-~--  108 (347)
                                                           .                                    .. .  
T Consensus       258 ~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~  337 (888)
T KOG0306|consen  258 FLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENT  337 (888)
T ss_pred             EEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCccee
Confidence                                                 0                                    00 0  


Q ss_pred             ---------------------ccee----eeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccc----e
Q 036314          109 ---------------------IRSF----KILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQV----S  159 (347)
Q Consensus       109 ---------------------~~~~----~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~----~  159 (347)
                                           +++.    -.+.||...|++++++.+...++||+ .+.|++|+..+..+.....    .
T Consensus       338 lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~~y~l  416 (888)
T KOG0306|consen  338 LVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITCGYIL  416 (888)
T ss_pred             EEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEeccccEE
Confidence                                 0000    13568999999999999988888765 4589999988765432111    0


Q ss_pred             -eeecc-----------CCCccccccccccccccccCCccceEEEEe-CCCCeEEEEecCCcEEEEECCC-----Cce--
Q 036314          160 -IKKRK-----------GNNQVEEPQLEGEAISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEM-----GKD--  219 (347)
Q Consensus       160 -~~~~~-----------~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~l~s~s~dg~v~vwd~~~-----~~~--  219 (347)
                       ....+           +...+.+. .....+-+.+.|++++++++. |++..++++|.|++|++||...     +..  
T Consensus       417 ~~~Fvpgd~~Iv~G~k~Gel~vfdl-aS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k  495 (888)
T KOG0306|consen  417 ASKFVPGDRYIVLGTKNGELQVFDL-ASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKK  495 (888)
T ss_pred             EEEecCCCceEEEeccCCceEEEEe-ehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccce
Confidence             00111           11111110 012233456789999999986 7888999999999999999742     111  


Q ss_pred             ------eeeeeeCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeC
Q 036314          220 ------LSDIFCGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASY  293 (347)
Q Consensus       220 ------~~~~~~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~  293 (347)
                            .+.+.....+-|+.++|+ +.++|++-.|+++++|=+..   .+-...+.||.=+|.|+..+||+. +++|||.
T Consensus       496 ~lsl~~~rtLel~ddvL~v~~Spd-gk~LaVsLLdnTVkVyflDt---lKFflsLYGHkLPV~smDIS~DSk-livTgSA  570 (888)
T KOG0306|consen  496 VLSLKHTRTLELEDDVLCVSVSPD-GKLLAVSLLDNTVKVYFLDT---LKFFLSLYGHKLPVLSMDISPDSK-LIVTGSA  570 (888)
T ss_pred             eeeeccceEEeccccEEEEEEcCC-CcEEEEEeccCeEEEEEecc---eeeeeeecccccceeEEeccCCcC-eEEeccC
Confidence                  122333456889999665 56889999999999997763   233457789999999999999985 7999999


Q ss_pred             CCcEEEEEcCCCccceeecCCCCeEEEEeecCCC-EEEEccCCceEEEeeccc
Q 036314          294 DGKVMLWDLRTAWPLSVIDSHKDKVLCADWWRGD-SVISGGVDSKLCVSSGVS  345 (347)
Q Consensus       294 D~~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~s~D~~v~vw~~~~  345 (347)
                      |..|++|-++=|.+-+.+.+|.+.|++|.|-|.. .+.|+|.|+.|+-|+|..
T Consensus       571 DKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~k  623 (888)
T KOG0306|consen  571 DKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEK  623 (888)
T ss_pred             CCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhh
Confidence            9999999999899999999999999999998755 588999999999999974

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.97  E-value=7.9e-30  Score=213.96  Aligned_cols=250  Identities=22%  Similarity=0.430  Sum_probs=191.0

Q ss_pred             CCCCcCCceeeccC--CCC--CEEEEEecCCeEEEEcCC-C----eEEEEeeccCCceEEEEEeecCCCceEEEEEccCC
Q 036314           19 EPSLHDDWVSAVDG--SNP--GFILTGCYDNLGRVWKAG-G----VCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKD   89 (347)
Q Consensus        19 ~~~~h~~~v~~~~~--~~~--~~l~sg~~d~~i~iw~~~-~----~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~D   89 (347)
                      ...||++.|.+++.  .+.  ..|+++|.|.++++|... +    .+++.-.||...|-+|+..+++    .++++||.|
T Consensus       139 ~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sg----tr~~SgS~D  214 (423)
T KOG0313|consen  139 TIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSG----TRFCSGSWD  214 (423)
T ss_pred             EEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCC----CeEEeeccc
Confidence            46799999998873  232  379999999999999753 2    1223344999999999987744    468999999


Q ss_pred             CcEEEEecccccc--c--------------cCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCC
Q 036314           90 QTLRLWKFDAEEL--V--------------NHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDA  153 (347)
Q Consensus        90 g~v~~wd~~~~~~--~--------------~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~  153 (347)
                      .+|++|+.+....  +              .......++.++.||..+|.+|.|++ ...++|+|+|.+|+.||++....
T Consensus       215 ~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~  293 (423)
T KOG0313|consen  215 TMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGL  293 (423)
T ss_pred             ceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccc
Confidence            9999999432211  0              01112356668999999999999988 77899999999999999986532


Q ss_pred             CCccceeeeccCCCccccccccccccccccCCccceEEEEe-CCCCeEEEEecCCcEEEEECCCCc--eeee-eee-Cee
Q 036314          154 AGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGK--DLSD-IFC-GKA  228 (347)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~l~s~s~dg~v~vwd~~~~~--~~~~-~~~-~~~  228 (347)
                      .                         .++. ......++.+ +....|++|+.|..+++||.+++.  .+.. +.. .+=
T Consensus       294 ~-------------------------~~~~-~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nw  347 (423)
T KOG0313|consen  294 K-------------------------STLT-TNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNW  347 (423)
T ss_pred             e-------------------------eeee-cCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhh
Confidence            1                         1111 2234566665 566789999999999999998753  3332 222 234


Q ss_pred             eEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcC
Q 036314          229 LNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLR  303 (347)
Q Consensus       229 ~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~  303 (347)
                      +..+.++|.+..+|++++.|+++++||+|..  ..+++.+.+|.+.|.++.|+..+  .++||+.|.+|+++.-.
T Consensus       348 Vssvkwsp~~~~~~~S~S~D~t~klWDvRS~--k~plydI~~h~DKvl~vdW~~~~--~IvSGGaD~~l~i~~~~  418 (423)
T KOG0313|consen  348 VSSVKWSPTNEFQLVSGSYDNTVKLWDVRST--KAPLYDIAGHNDKVLSVDWNEGG--LIVSGGADNKLRIFKGS  418 (423)
T ss_pred             hhheecCCCCceEEEEEecCCeEEEEEeccC--CCcceeeccCCceEEEEeccCCc--eEEeccCcceEEEeccc
Confidence            6788899999999999999999999999964  34689999999999999998654  69999999999998654

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.97  E-value=1.4e-29  Score=203.51  Aligned_cols=287  Identities=18%  Similarity=0.285  Sum_probs=216.1

Q ss_pred             CCCCcCCceeeccCC-CCCEEEEEecCCeEEEEcC-CCeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEe
Q 036314           19 EPSLHDDWVSAVDGS-NPGFILTGCYDNLGRVWKA-GGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWK   96 (347)
Q Consensus        19 ~~~~h~~~v~~~~~~-~~~~l~sg~~d~~i~iw~~-~~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd   96 (347)
                      .+.||+.+++.+++. +|.+|.|++.|.++.+|-. .|..+-++.||++.|.++++..+    ...|+|||.|.++++||
T Consensus         5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~----s~~liTGSAD~t~kLWD   80 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWD----SKHLITGSADQTAKLWD   80 (327)
T ss_pred             ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCC----cceeeeccccceeEEEE
Confidence            456899999999987 6789999999999999974 78888999999999999998663    34799999999999999


Q ss_pred             ccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEe-----eCCCcEEEEecCCCCCCCccceeeeccCCCcccc
Q 036314           97 FDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSG-----SWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEE  171 (347)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sg-----s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~  171 (347)
                      +++++.+.         ++. ...+|..+.|+.+|++++..     +.-+.|.++|+++.+...                
T Consensus        81 v~tGk~la---------~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~----------------  134 (327)
T KOG0643|consen   81 VETGKQLA---------TWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDI----------------  134 (327)
T ss_pred             cCCCcEEE---------Eee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhh----------------
Confidence            99987543         332 36789999999999988765     345779999988643210                


Q ss_pred             ccccccccccccCCccceEEEEe-CCCCeEEEEecCCcEEEEECCCCceeeee--eeCeeeEEEEeeCCCCcEEEEecCC
Q 036314          172 PQLEGEAISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDI--FCGKALNCIDIGGEGSALIAAGGSD  248 (347)
Q Consensus       172 ~~~~~~~~~~~~~h~~~v~~~~~-~~~~~l~s~s~dg~v~vwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~la~~~~d  248 (347)
                        ...++...+..+.+.+..+.| |-++.|++|..||.|..||++++.....-  .+...++.+.++++ ..++++++.|
T Consensus       135 --~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d-~T~FiT~s~D  211 (327)
T KOG0643|consen  135 --DSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRD-RTYFITGSKD  211 (327)
T ss_pred             --cccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCC-cceEEecccC
Confidence              011223445556677888888 57889999999999999999998665432  23457888888654 5688999999


Q ss_pred             CcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCC-cEEEEEcCCC------------ccceeecCCC
Q 036314          249 PILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDG-KVMLWDLRTA------------WPLSVIDSHK  315 (347)
Q Consensus       249 ~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~-~i~lwd~~~~------------~~~~~~~~h~  315 (347)
                      .+-++||.+..   ..++++. -..+|++.+++|-....++.|+.+. -|.-=+.+.|            +.+....+|-
T Consensus       212 ttakl~D~~tl---~v~Kty~-te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHF  287 (327)
T KOG0643|consen  212 TTAKLVDVRTL---EVLKTYT-TERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHF  287 (327)
T ss_pred             ccceeeeccce---eeEEEee-ecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccc
Confidence            99999998743   2344543 4457899999997655444444332 1211122222            3355678999


Q ss_pred             CeEEEEeecC-CCEEEEccCCceEEEee
Q 036314          316 DKVLCADWWR-GDSVISGGVDSKLCVSS  342 (347)
Q Consensus       316 ~~v~~~~~~~-~~~l~s~s~D~~v~vw~  342 (347)
                      ++|.+++|+| |+..+||+.||.|+|-.
T Consensus       288 GPINsvAfhPdGksYsSGGEDG~VR~h~  315 (327)
T KOG0643|consen  288 GPINSVAFHPDGKSYSSGGEDGYVRLHH  315 (327)
T ss_pred             cCcceeEECCCCcccccCCCCceEEEEE
Confidence            9999999986 77899999999999864

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=4.3e-29  Score=205.02  Aligned_cols=256  Identities=18%  Similarity=0.345  Sum_probs=195.3

Q ss_pred             CcCCceeeccCCCCCEEEEEecCCeEEEEcCC-CeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEecccc
Q 036314           22 LHDDWVSAVDGSNPGFILTGCYDNLGRVWKAG-GVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAE  100 (347)
Q Consensus        22 ~h~~~v~~~~~~~~~~l~sg~~d~~i~iw~~~-~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~  100 (347)
                      .|...|++++.+ +.++||||.|.+|+|||+. ......+-.|.+.|+++.|.+....  .+|++|++||.|.+|+... 
T Consensus        41 aH~~sitavAVs-~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~--shLlS~sdDG~i~iw~~~~-  116 (362)
T KOG0294|consen   41 AHAGSITALAVS-GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSK--SHLLSGSDDGHIIIWRVGS-  116 (362)
T ss_pred             ccccceeEEEec-ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcch--hheeeecCCCcEEEEEcCC-
Confidence            699999999974 6799999999999999986 3456678889999999999875432  2689999999999999754 


Q ss_pred             ccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccc
Q 036314          101 ELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAIS  180 (347)
Q Consensus       101 ~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (347)
                              +.++.++++|++.|+.++++|.|++.++.+.|+.+++||+-.+...                       .+.
T Consensus       117 --------W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a-----------------------~v~  165 (362)
T KOG0294|consen  117 --------WELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVA-----------------------FVL  165 (362)
T ss_pred             --------eEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccc-----------------------eee
Confidence                    4577889999999999999999999999999999999998765311                       011


Q ss_pred             cccCCccceEEEEe-CCCCeEEEEecCCcEEEEECCCCceeeeeeeCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCC
Q 036314          181 TLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKP  259 (347)
Q Consensus       181 ~~~~h~~~v~~~~~-~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~  259 (347)
                      .+. +  .-..+.| +.|.+++.++.+ .|-+|.+.+......+.....+.|+.+  .++..+++|++|+.|++||... 
T Consensus       166 ~L~-~--~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~~~r~l~~~~--l~~~~L~vG~d~~~i~~~D~ds-  238 (362)
T KOG0294|consen  166 NLK-N--KATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIENPKRILCATF--LDGSELLVGGDNEWISLKDTDS-  238 (362)
T ss_pred             ccC-C--cceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhhccccceeeee--cCCceEEEecCCceEEEeccCC-
Confidence            111 1  1122566 567777665544 599999887766555554555666666  3445788999999999999875 


Q ss_pred             CCCCCeEEecCCCCCeeEEE-e-CCCCCeEEEEEeCCCcEEEEEcCCC-----ccceeecCCCCeEEEEee
Q 036314          260 GTSAPVFQFSSHNSWISACK-W-HNKSWFHLISASYDGKVMLWDLRTA-----WPLSVIDSHKDKVLCADW  323 (347)
Q Consensus       260 ~~~~~~~~~~~h~~~v~~v~-~-s~~~~~~l~s~s~D~~i~lwd~~~~-----~~~~~~~~h~~~v~~~~~  323 (347)
                        ..+...+.+|..+|-++. + +|++ ++|+|+|.||.|+|||++..     +++..+.. ...++|+.-
T Consensus       239 --~~~~~~~~AH~~RVK~i~~~~~~~~-~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~n~-~~RltCl~~  305 (362)
T KOG0294|consen  239 --DTPLTEFLAHENRVKDIASYTNPEH-EYLVTASSDGFIKVWDIDMETKKRPTLLAELNT-NVRLTCLRV  305 (362)
T ss_pred             --CccceeeecchhheeeeEEEecCCc-eEEEEeccCceEEEEEccccccCCcceeEEeec-CCccceeee
Confidence              345778889999999988 3 3444 67999999999999999865     23444332 456667654

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.97  E-value=5.2e-29  Score=208.11  Aligned_cols=280  Identities=15%  Similarity=0.196  Sum_probs=203.0

Q ss_pred             EEEEEeccCCCCcC-CCCCcCCceeeccCC-CCCEEEEEecCCeEEEEcCC-CeEEEEeeccCCceEEEEEeecCCCceE
Q 036314            5 EIEYIKAVAPQKEE-EPSLHDDWVSAVDGS-NPGFILTGCYDNLGRVWKAG-GVCTHILEGHCGAVSSVNIIKSDGLKYV   81 (347)
Q Consensus         5 ~~~~~~~~~~~~~~-~~~~h~~~v~~~~~~-~~~~l~sg~~d~~i~iw~~~-~~~~~~l~~h~~~V~~v~~~~~~~~~~~   81 (347)
                      +++||=+.....+- +..+|++.|+++.|+ ++.+||||+.+|.++||+.. +.....+....+.+.-+.|+|    ...
T Consensus        86 D~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp----~a~  161 (399)
T KOG0296|consen   86 DLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHP----RAH  161 (399)
T ss_pred             ceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecc----ccc
Confidence            35666666544433 367999999999999 67799999999999999964 555556666667778888998    446


Q ss_pred             EEEEccCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccc---
Q 036314           82 TVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQV---  158 (347)
Q Consensus        82 ~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~---  158 (347)
                      .|+.|+.||.+-+|.+.++         ...+.+.||..++++=.|.|+|++++++..||+|++||..++...-...   
T Consensus       162 illAG~~DGsvWmw~ip~~---------~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e  232 (399)
T KOG0296|consen  162 ILLAGSTDGSVWMWQIPSQ---------ALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAE  232 (399)
T ss_pred             EEEeecCCCcEEEEECCCc---------ceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccc
Confidence            8999999999999999764         2446789999999999999999999999999999999988753211000   


Q ss_pred             ----eeeec--------cCCC--cc-ccccccccccccc--------cCCccceEEEEe---C-CCCeEEEEecCCcEEE
Q 036314          159 ----SIKKR--------KGNN--QV-EEPQLEGEAISTL--------VGHTQCVSSVVW---P-QQETIYSASWDHSVRT  211 (347)
Q Consensus       159 ----~~~~~--------~~~~--~~-~~~~~~~~~~~~~--------~~h~~~v~~~~~---~-~~~~l~s~s~dg~v~v  211 (347)
                          .....        ..+.  .. ......++.+...        ..++..+.++.+   + .-...|+|+.||+|.|
T Consensus       233 ~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~i  312 (399)
T KOG0296|consen  233 GLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAI  312 (399)
T ss_pred             cCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEE
Confidence                00000        0000  00 0000011111111        234444444443   2 2345789999999999


Q ss_pred             EECCCCceeeeeeeCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEE
Q 036314          212 WDVEMGKDLSDIFCGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISA  291 (347)
Q Consensus       212 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~  291 (347)
                      ||+...+..+...+...+..+.|.+  ...+++++.+|+|+.||.|.+   ...+++.||...|.+++++|+.. +++|+
T Consensus       313 yD~a~~~~R~~c~he~~V~~l~w~~--t~~l~t~c~~g~v~~wDaRtG---~l~~~y~GH~~~Il~f~ls~~~~-~vvT~  386 (399)
T KOG0296|consen  313 YDLAASTLRHICEHEDGVTKLKWLN--TDYLLTACANGKVRQWDARTG---QLKFTYTGHQMGILDFALSPQKR-LVVTV  386 (399)
T ss_pred             EecccchhheeccCCCceEEEEEcC--cchheeeccCceEEeeecccc---ceEEEEecCchheeEEEEcCCCc-EEEEe
Confidence            9998776655555666777777755  346778889999999999853   45789999999999999999985 69999


Q ss_pred             eCCCcEEEEEcC
Q 036314          292 SYDGKVMLWDLR  303 (347)
Q Consensus       292 s~D~~i~lwd~~  303 (347)
                      |.|++.+||+..
T Consensus       387 s~D~~a~VF~v~  398 (399)
T KOG0296|consen  387 SDDNTALVFEVP  398 (399)
T ss_pred             cCCCeEEEEecC
Confidence            999999999863

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.97  E-value=3.7e-29  Score=205.09  Aligned_cols=286  Identities=17%  Similarity=0.251  Sum_probs=214.5

Q ss_pred             CCCcCCceeeccCC-CCCEEEEEecCCeEEEEcCC-------------C------eEEEEeeccCCceEEEEEeecCCCc
Q 036314           20 PSLHDDWVSAVDGS-NPGFILTGCYDNLGRVWKAG-------------G------VCTHILEGHCGAVSSVNIIKSDGLK   79 (347)
Q Consensus        20 ~~~h~~~v~~~~~~-~~~~l~sg~~d~~i~iw~~~-------------~------~~~~~l~~h~~~V~~v~~~~~~~~~   79 (347)
                      ...|+.+.++.+|+ +|.++||||.|..|+|.|.+             |      ..+++|-.|.++|+.+.|+|    .
T Consensus       108 lt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHP----r  183 (430)
T KOG0640|consen  108 LTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHP----R  183 (430)
T ss_pred             EeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecc----h
Confidence            55799999999998 56799999999999999852             1      34578889999999999999    4


Q ss_pred             eEEEEEccCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccce
Q 036314           80 YVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVS  159 (347)
Q Consensus        80 ~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~  159 (347)
                      ...|++|+.|++||+||+......      +..+.|. -..+|+++.|+|.|.+++.|...-++++||+++-++-..   
T Consensus       184 e~ILiS~srD~tvKlFDfsK~saK------rA~K~~q-d~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvs---  253 (430)
T KOG0640|consen  184 ETILISGSRDNTVKLFDFSKTSAK------RAFKVFQ-DTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVS---  253 (430)
T ss_pred             hheEEeccCCCeEEEEecccHHHH------HHHHHhh-ccceeeeEeecCCCceEEEecCCCceeEEeccceeEeee---
Confidence            458999999999999998754321      1222332 356799999999999999999999999999986432100   


Q ss_pred             eeeccCCCccccccccccccccccCCccceEEEEeC-CCCeEEEEecCCcEEEEECCCCceeeeeee---CeeeEEEEee
Q 036314          160 IKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWP-QQETIYSASWDHSVRTWDVEMGKDLSDIFC---GKALNCIDIG  235 (347)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~---~~~~~~~~~~  235 (347)
                                         ..--.+|++.|+++.++ .+...+++|.||.|++||--+++++.++..   +..+....|.
T Consensus       254 -------------------anPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ft  314 (430)
T KOG0640|consen  254 -------------------ANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFT  314 (430)
T ss_pred             -------------------cCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEc
Confidence                               00124588999999985 677889999999999999988888877742   3456666665


Q ss_pred             CCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCC--CC---eeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCcccee
Q 036314          236 GEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHN--SW---ISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSV  310 (347)
Q Consensus       236 ~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~--~~---v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~  310 (347)
                       .++.++++.+.|..+++|.+...   +++..+.|..  +.   -+...|+-...+.|.---..+.+.-||.|++.....
T Consensus       315 -kn~kyiLsSG~DS~vkLWEi~t~---R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l  390 (430)
T KOG0640|consen  315 -KNGKYILSSGKDSTVKLWEISTG---RMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVAL  390 (430)
T ss_pred             -cCCeEEeecCCcceeeeeeecCC---ceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhh
Confidence             45567888889999999998642   3344443331  11   122345555444333333456788899998766554


Q ss_pred             e-cCCCCeEEEEeecC-CCEEEEccCCceEEEee
Q 036314          311 I-DSHKDKVLCADWWR-GDSVISGGVDSKLCVSS  342 (347)
Q Consensus       311 ~-~~h~~~v~~~~~~~-~~~l~s~s~D~~v~vw~  342 (347)
                      + .||.+.|+++.-+| +.-+++||.|-.+|+|=
T Consensus       391 ~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWy  424 (430)
T KOG0640|consen  391 LSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWY  424 (430)
T ss_pred             cccCCCCCceEEEeCCCCCceeeecccceeeeee
Confidence            4 58999999999887 55799999999999993

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.97  E-value=3e-28  Score=211.07  Aligned_cols=244  Identities=30%  Similarity=0.516  Sum_probs=199.4

Q ss_pred             EEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEe
Q 036314           58 HILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSG  137 (347)
Q Consensus        58 ~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sg  137 (347)
                      +.+.+|.+.|.++.|++++    ..|++++.||.|++|++..++         ....+..|...+..+.|.++++.++++
T Consensus         3 ~~~~~h~~~i~~~~~~~~~----~~l~~~~~~g~i~i~~~~~~~---------~~~~~~~~~~~i~~~~~~~~~~~l~~~   69 (289)
T cd00200           3 RTLKGHTGGVTCVAFSPDG----KLLATGSGDGTIKVWDLETGE---------LLRTLKGHTGPVRDVAASADGTYLASG   69 (289)
T ss_pred             hHhcccCCCEEEEEEcCCC----CEEEEeecCcEEEEEEeeCCC---------cEEEEecCCcceeEEEECCCCCEEEEE
Confidence            4577999999999999853    368999999999999987653         344567899999999999999999999


Q ss_pred             eCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEeC-CCCeEEEEecCCcEEEEECCC
Q 036314          138 SWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWP-QQETIYSASWDHSVRTWDVEM  216 (347)
Q Consensus       138 s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~l~s~s~dg~v~vwd~~~  216 (347)
                      +.|+.|++|++.+.                         .....+..|...+.++.|. +++.+++++.|+.+++||+++
T Consensus        70 ~~~~~i~i~~~~~~-------------------------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~  124 (289)
T cd00200          70 SSDKTIRLWDLETG-------------------------ECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVET  124 (289)
T ss_pred             cCCCeEEEEEcCcc-------------------------cceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCC
Confidence            99999999998753                         1233456777789999885 456677777799999999997


Q ss_pred             Cceeeeee-eCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCC
Q 036314          217 GKDLSDIF-CGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDG  295 (347)
Q Consensus       217 ~~~~~~~~-~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~  295 (347)
                      ++....+. ....+.++.+.+. +.++++++.|+.|++||++..   .....+..|...+.++.|+|++. .|++++.|+
T Consensus       125 ~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~~~~i~i~d~~~~---~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~~~  199 (289)
T cd00200         125 GKCLTTLRGHTDWVNSVAFSPD-GTFVASSSQDGTIKLWDLRTG---KCVATLTGHTGEVNSVAFSPDGE-KLLSSSSDG  199 (289)
T ss_pred             cEEEEEeccCCCcEEEEEEcCc-CCEEEEEcCCCcEEEEEcccc---ccceeEecCccccceEEECCCcC-EEEEecCCC
Confidence            77666665 3346888999765 567777777999999999743   23566778888999999999985 478888899


Q ss_pred             cEEEEEcCCCccceeecCCCCeEEEEeecC-CCEEEEccCCceEEEeecc
Q 036314          296 KVMLWDLRTAWPLSVIDSHKDKVLCADWWR-GDSVISGGVDSKLCVSSGV  344 (347)
Q Consensus       296 ~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~l~s~s~D~~v~vw~~~  344 (347)
                      .|++||++.++.+..+..|.+.+.++.|++ +..+++++.|+.|++|+..
T Consensus       200 ~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~  249 (289)
T cd00200         200 TIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLR  249 (289)
T ss_pred             cEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcC
Confidence            999999998888888888999999999987 5678887789999999864

>PTZ00420 coronin; Provisional

Probab=99.97  E-value=3.2e-28  Score=225.64  Aligned_cols=253  Identities=14%  Similarity=0.214  Sum_probs=177.3

Q ss_pred             EEecCCeEEEEcCC-CeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeeeecc
Q 036314           40 TGCYDNLGRVWKAG-GVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGH  118 (347)
Q Consensus        40 sg~~d~~i~iw~~~-~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h  118 (347)
                      .||.++.+++|+.. ...+..+.+|.+.|.+++|+|..+   ..|+||+.|++|++||+..+.... .....+...+.+|
T Consensus        49 gGG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~---~lLASgS~DgtIrIWDi~t~~~~~-~~i~~p~~~L~gH  124 (568)
T PTZ00420         49 GGGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFS---EILASGSEDLTIRVWEIPHNDESV-KEIKDPQCILKGH  124 (568)
T ss_pred             CCCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCC---CEEEEEeCCCeEEEEECCCCCccc-cccccceEEeecC
Confidence            36778999999864 456778999999999999998533   379999999999999997532100 0001234567899


Q ss_pred             ccceEEEEEeCCCCE-EEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEe-CC
Q 036314          119 KASVHSIAAETSGNM-VCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW-PQ  196 (347)
Q Consensus       119 ~~~V~~v~~s~~~~~-l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~  196 (347)
                      ...|.+++|+|++.. +++++.|++|+|||+.++..                         ...+. |...|.++.| ++
T Consensus       125 ~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~-------------------------~~~i~-~~~~V~Slswspd  178 (568)
T PTZ00420        125 KKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKR-------------------------AFQIN-MPKKLSSLKWNIK  178 (568)
T ss_pred             CCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcE-------------------------EEEEe-cCCcEEEEEECCC
Confidence            999999999999875 57999999999999976421                         12222 4467899998 57


Q ss_pred             CCeEEEEecCCcEEEEECCCCceeeeeeeCee-e-----EEEEeeCCCCcEEEEecCC----CcEEEEeCCCCCCCCCeE
Q 036314          197 QETIYSASWDHSVRTWDVEMGKDLSDIFCGKA-L-----NCIDIGGEGSALIAAGGSD----PILRIWDPRKPGTSAPVF  266 (347)
Q Consensus       197 ~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~la~~~~d----~~i~iwd~~~~~~~~~~~  266 (347)
                      +..|++++.|++|+|||+++++.+..+..+.. .     ....++++ ...+++++.|    +.|+|||++....  ++.
T Consensus       179 G~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d-~~~IlTtG~d~~~~R~VkLWDlr~~~~--pl~  255 (568)
T PTZ00420        179 GNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGD-DNYILSTGFSKNNMREMKLWDLKNTTS--ALV  255 (568)
T ss_pred             CCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCC-CCEEEEEEcCCCCccEEEEEECCCCCC--ceE
Confidence            88899999999999999999988776654321 1     22233344 4456665555    3799999986433  343


Q ss_pred             Eec--CCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeec--CCCCeEEEEeecCCC
Q 036314          267 QFS--SHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVID--SHKDKVLCADWWRGD  327 (347)
Q Consensus       267 ~~~--~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~--~h~~~v~~~~~~~~~  327 (347)
                      .+.  .+.+.+. ..|.++...++++|+.|++|++|++..+. +..+.  .+..+..+++|.|.+
T Consensus       256 ~~~ld~~~~~L~-p~~D~~tg~l~lsGkGD~tIr~~e~~~~~-~~~l~~~~s~~p~~g~~f~Pkr  318 (568)
T PTZ00420        256 TMSIDNASAPLI-PHYDESTGLIYLIGKGDGNCRYYQHSLGS-IRKVNEYKSCSPFRSFGFLPKQ  318 (568)
T ss_pred             EEEecCCccceE-EeeeCCCCCEEEEEECCCeEEEEEccCCc-EEeecccccCCCccceEEcccc
Confidence            332  2223222 23445544678999999999999998763 33222  245677889997643

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=3e-28  Score=217.72  Aligned_cols=270  Identities=23%  Similarity=0.337  Sum_probs=214.7

Q ss_pred             ccCCCCCEEEEEecCCeEEEEcC-CCeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccc
Q 036314           30 VDGSNPGFILTGCYDNLGRVWKA-GGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKK  108 (347)
Q Consensus        30 ~~~~~~~~l~sg~~d~~i~iw~~-~~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~  108 (347)
                      ++.+..+.||.| .+..+++|+. .+.......-++..|+++.|++++    .+|+.|..+|+|.|||....+       
T Consensus       183 ldWss~n~laVa-lg~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G----~~LavG~~~g~v~iwD~~~~k-------  250 (484)
T KOG0305|consen  183 LDWSSANVLAVA-LGQSVYLWSASSGSVTELCSFGEELVTSVKWSPDG----SHLAVGTSDGTVQIWDVKEQK-------  250 (484)
T ss_pred             hhcccCCeEEEE-ecceEEEEecCCCceEEeEecCCCceEEEEECCCC----CEEEEeecCCeEEEEehhhcc-------
Confidence            334444555555 5668999996 455444445558999999999854    479999999999999987543       


Q ss_pred             cceeeeeec-cccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCcc
Q 036314          109 IRSFKILRG-HKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQ  187 (347)
Q Consensus       109 ~~~~~~~~~-h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  187 (347)
                        ....+.+ |...|.+++|.  +..+.+|+.|+.|..+|++..+.                        ...++.+|..
T Consensus       251 --~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~------------------------~~~~~~~H~q  302 (484)
T KOG0305|consen  251 --KTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQH------------------------VVSTLQGHRQ  302 (484)
T ss_pred             --ccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchh------------------------hhhhhhcccc
Confidence              3345566 99999999998  67899999999999999875421                        1224788999


Q ss_pred             ceEEEEe-CCCCeEEEEecCCcEEEEECCCCceeeeee-eCeeeEEEEeeCCCCcEEEEec--CCCcEEEEeCCCCCCCC
Q 036314          188 CVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIF-CGKALNCIDIGGEGSALIAAGG--SDPILRIWDPRKPGTSA  263 (347)
Q Consensus       188 ~v~~~~~-~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~la~~~--~d~~i~iwd~~~~~~~~  263 (347)
                      .|+.+.| +++.+++||+.|+.+.|||.....+...+. +...+..++|+|-...+||+|+  .|+.|++||.....   
T Consensus       303 eVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~---  379 (484)
T KOG0305|consen  303 EVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGA---  379 (484)
T ss_pred             eeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCc---
Confidence            9999999 578899999999999999997666665554 4467999999998888999974  69999999987432   


Q ss_pred             CeEEecCCCCCeeEEEeCCCCCeEEEEEe-CCCcEEEEEcCCCccceeecCCCCeEEEEeecC-CCEEEEccCCceEEEe
Q 036314          264 PVFQFSSHNSWISACKWHNKSWFHLISAS-YDGKVMLWDLRTAWPLSVIDSHKDKVLCADWWR-GDSVISGGVDSKLCVS  341 (347)
Q Consensus       264 ~~~~~~~h~~~v~~v~~s~~~~~~l~s~s-~D~~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~l~s~s~D~~v~vw  341 (347)
                      .+..+ .-.+.|.++.|++....++.+-+ .+..|.||+.-+...+..+.+|...|+.++++| |..+++|+.|.|+++|
T Consensus       380 ~i~~v-dtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw  458 (484)
T KOG0305|consen  380 RIDSV-DTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFW  458 (484)
T ss_pred             Eeccc-ccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEec
Confidence            23332 35567999999999876555544 467899999999888899999999999999986 6789999999999999


Q ss_pred             ec
Q 036314          342 SG  343 (347)
Q Consensus       342 ~~  343 (347)
                      .-
T Consensus       459 ~~  460 (484)
T KOG0305|consen  459 NL  460 (484)
T ss_pred             cc
Confidence            63

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=2.3e-29  Score=213.21  Aligned_cols=259  Identities=22%  Similarity=0.313  Sum_probs=199.6

Q ss_pred             eEEEEEEeccCCCCcCCCCCcCCceeeccCC-CCCEEEEEecCCeEEEEcCC-CeEEEEee-ccCCceEEEEEeecCCCc
Q 036314            3 VLEIEYIKAVAPQKEEEPSLHDDWVSAVDGS-NPGFILTGCYDNLGRVWKAG-GVCTHILE-GHCGAVSSVNIIKSDGLK   79 (347)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~l~sg~~d~~i~iw~~~-~~~~~~l~-~h~~~V~~v~~~~~~~~~   79 (347)
                      +|++.|.+.++  -..+..+|..+|..+.+| ++++|+++|.|..+++||.. |.+.+.+. +|...+.+.+|.|++   
T Consensus       250 iw~v~~d~~~k--l~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg---  324 (519)
T KOG0293|consen  250 IWIVVYDVHFK--LKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDG---  324 (519)
T ss_pred             EEEEecCccee--eeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCC---
Confidence            56777765531  123567999999999998 56799999999999999974 66655443 456889999999944   


Q ss_pred             eEEEEEccCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccce
Q 036314           80 YVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVS  159 (347)
Q Consensus        80 ~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~  159 (347)
                       ..+++|+.|+++.+||++.+..    ..++-..     ...|.+++..+||+.+++...|..|++++.++....     
T Consensus       325 -~~~V~Gs~dr~i~~wdlDgn~~----~~W~gvr-----~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr-----  389 (519)
T KOG0293|consen  325 -FRFVTGSPDRTIIMWDLDGNIL----GNWEGVR-----DPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDR-----  389 (519)
T ss_pred             -ceeEecCCCCcEEEecCCcchh----hcccccc-----cceeEEEEEcCCCcEEEEEecccceeeechhhhhhh-----
Confidence             4689999999999999987642    1222211     245899999999999999999999999987653210     


Q ss_pred             eeeccCCCccccccccccccccccCCccceEEEEeC-CCCeEEEEecCCcEEEEECCCCceeeeeeeCe---eeEEEEee
Q 036314          160 IKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWP-QQETIYSASWDHSVRTWDVEMGKDLSDIFCGK---ALNCIDIG  235 (347)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~---~~~~~~~~  235 (347)
                                           .+.....+|.++..+ ++++++.--.+..+++||++....+.....++   .+..-.|+
T Consensus       390 ---------------------~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFg  448 (519)
T KOG0293|consen  390 ---------------------GLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFG  448 (519)
T ss_pred             ---------------------ccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccC
Confidence                                 112233567777765 56677777788999999999777666655432   33344566


Q ss_pred             CCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCC
Q 036314          236 GEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTA  305 (347)
Q Consensus       236 ~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~  305 (347)
                      ..+..++|+|++|++|+||+...   ..++..++||...|++|+|+|.+++++||||.||+||||.+...
T Consensus       449 g~~~~fiaSGSED~kvyIWhr~s---gkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~~  515 (519)
T KOG0293|consen  449 GGNDKFIASGSEDSKVYIWHRIS---GKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSDN  515 (519)
T ss_pred             CCCcceEEecCCCceEEEEEccC---CceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence            66678999999999999999764   34688999999999999999999999999999999999988653

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=4.8e-29  Score=228.49  Aligned_cols=253  Identities=19%  Similarity=0.297  Sum_probs=194.1

Q ss_pred             EEee-ccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccc--------------------------c------
Q 036314           58 HILE-GHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELV--------------------------N------  104 (347)
Q Consensus        58 ~~l~-~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~--------------------------~------  104 (347)
                      +.+. .|.+.|.++.|++    ++++||+|+.|+.||||.+...+..                          .      
T Consensus       260 Qe~~~ah~gaIw~mKFS~----DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~  335 (712)
T KOG0283|consen  260 QEISNAHKGAIWAMKFSH----DGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSR  335 (712)
T ss_pred             eccccccCCcEEEEEeCC----CCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccc
Confidence            3455 8999999999999    4468999999999999997651000                          0      


Q ss_pred             ---------Cc----------cccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccC
Q 036314          105 ---------HP----------KKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKG  165 (347)
Q Consensus       105 ---------~~----------~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~  165 (347)
                               .+          -..+++..+.||.+.|.++.|+.+ ++|+|+|.|.|||||++...              
T Consensus       336 ~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~--------------  400 (712)
T KOG0283|consen  336 TSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRK--------------  400 (712)
T ss_pred             ccccccccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCc--------------
Confidence                     00          012555678999999999999975 58999999999999998753              


Q ss_pred             CCccccccccccccccccCCccceEEEEe-C-CCCeEEEEecCCcEEEEECCCCceeeeeeeCeeeEEEEeeCCCCcEEE
Q 036314          166 NNQVEEPQLEGEAISTLVGHTQCVSSVVW-P-QQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEGSALIA  243 (347)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~-~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~la  243 (347)
                                 ++++++. |.+.|+|++| | ++++++||+.|+.||||++...+.+.-......++++++.|+ +...+
T Consensus       401 -----------~CL~~F~-HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~Pd-Gk~av  467 (712)
T KOG0283|consen  401 -----------ECLKVFS-HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPD-GKGAV  467 (712)
T ss_pred             -----------ceeeEEe-cCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccC-CceEE
Confidence                       3455543 9999999999 4 678999999999999999987654432234567889999876 56778


Q ss_pred             EecCCCcEEEEeCCCCCCCCCeEEec-------CCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecCCCC
Q 036314          244 AGGSDPILRIWDPRKPGTSAPVFQFS-------SHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKD  316 (347)
Q Consensus       244 ~~~~d~~i~iwd~~~~~~~~~~~~~~-------~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h~~  316 (347)
                      .|+.+|.+++|+.+... ......+.       .|. .|+.+.|.|.....++..+.|..|||+|.++...+..|.|+.+
T Consensus       468 IGt~~G~C~fY~t~~lk-~~~~~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n  545 (712)
T KOG0283|consen  468 IGTFNGYCRFYDTEGLK-LVSDFHIRLHNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRN  545 (712)
T ss_pred             EEEeccEEEEEEccCCe-EEEeeeEeeccCccccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhccccc
Confidence            89999999999987421 11111221       233 7999999987766688889999999999988878888877653


Q ss_pred             eE--EEEeec-CCCEEEEccCCceEEEeecc
Q 036314          317 KV--LCADWW-RGDSVISGGVDSKLCVSSGV  344 (347)
Q Consensus       317 ~v--~~~~~~-~~~~l~s~s~D~~v~vw~~~  344 (347)
                      .-  ....|+ +|++|++++.|.-|+||...
T Consensus       546 ~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~  576 (712)
T KOG0283|consen  546 TSSQISASFSSDGKHIVSASEDSWVYIWKND  576 (712)
T ss_pred             CCcceeeeEccCCCEEEEeecCceEEEEeCC
Confidence            22  345774 79999999999999999964

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.97  E-value=7.7e-28  Score=197.22  Aligned_cols=276  Identities=16%  Similarity=0.213  Sum_probs=209.0

Q ss_pred             CCCcCCCCCcCCceeeccCCC-CCEEEEEecCCeEEEEcCCCeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcE
Q 036314           14 PQKEEEPSLHDDWVSAVDGSN-PGFILTGCYDNLGRVWKAGGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTL   92 (347)
Q Consensus        14 ~~~~~~~~~h~~~v~~~~~~~-~~~l~sg~~d~~i~iw~~~~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v   92 (347)
                      ++..+......+.|+.+.|++ .+.|+.+||||++|+|+.....++..-.|..++.+.+|.+.     ..+++|+.||+|
T Consensus         3 ~~~~~l~npP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~-----~~~~~G~~dg~v   77 (323)
T KOG1036|consen    3 PNEFELENPPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFADE-----STIVTGGLDGQV   77 (323)
T ss_pred             ccccccCCCChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccCC-----ceEEEeccCceE
Confidence            556666777789999999984 45777788999999999876555555569999999999863     258999999999


Q ss_pred             EEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccc
Q 036314           93 RLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEP  172 (347)
Q Consensus        93 ~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  172 (347)
                      |++|+++++.          ..+..|..+|+|+.+.+-...+++||+|++|++||......                   
T Consensus        78 r~~Dln~~~~----------~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~-------------------  128 (323)
T KOG1036|consen   78 RRYDLNTGNE----------DQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVV-------------------  128 (323)
T ss_pred             EEEEecCCcc----------eeeccCCCceEEEEeeccCCeEEEcccCccEEEEecccccc-------------------
Confidence            9999987642          34667999999999998888999999999999999764211                   


Q ss_pred             cccccccccccCCccceEEEEeCCCCeEEEEecCCcEEEEECCCCceeeeee---eCeeeEEEEeeCCCCcEEEEecCCC
Q 036314          173 QLEGEAISTLVGHTQCVSSVVWPQQETIYSASWDHSVRTWDVEMGKDLSDIF---CGKALNCIDIGGEGSALIAAGGSDP  249 (347)
Q Consensus       173 ~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~la~~~~d~  249 (347)
                            ..++. ..+.|.++.. .++.|+.|..|..+.+||++......+..   ....+.|+++.|+..- ++.++-||
T Consensus       129 ------~~~~d-~~kkVy~~~v-~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eG-y~~sSieG  199 (323)
T KOG1036|consen  129 ------VGTFD-QGKKVYCMDV-SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEG-YVVSSIEG  199 (323)
T ss_pred             ------ccccc-cCceEEEEec-cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCc-eEEEeecc
Confidence                  11111 2235666653 56778888999999999998765544222   2446789998885544 46677899


Q ss_pred             cEEEEeCCCC-CCCCCeEEecCCCC---------CeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecCCCCeEE
Q 036314          250 ILRIWDPRKP-GTSAPVFQFSSHNS---------WISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKVL  319 (347)
Q Consensus       250 ~i~iwd~~~~-~~~~~~~~~~~h~~---------~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h~~~v~  319 (347)
                      .|.+=..... ......+.|..|..         +|++++|+|--. .||||+.||.|.+||+...+.+..+..-...|.
T Consensus       200 RVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~-tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~  278 (323)
T KOG1036|consen  200 RVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHG-TFATGGSDGIVNIWDLFNRKRLKQLAKYETSIS  278 (323)
T ss_pred             eEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccc-eEEecCCCceEEEccCcchhhhhhccCCCCceE
Confidence            8876443321 22234567777754         589999999854 599999999999999988877887766667899


Q ss_pred             EEeec-CCCEEEEcc
Q 036314          320 CADWW-RGDSVISGG  333 (347)
Q Consensus       320 ~~~~~-~~~~l~s~s  333 (347)
                      +++|+ +|..||.++
T Consensus       279 slsfs~dG~~LAia~  293 (323)
T KOG1036|consen  279 SLSFSMDGSLLAIAS  293 (323)
T ss_pred             EEEeccCCCeEEEEe
Confidence            99997 688888776

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.97  E-value=4.3e-30  Score=204.69  Aligned_cols=244  Identities=18%  Similarity=0.239  Sum_probs=195.3

Q ss_pred             CCcCCceeeccCCC-CCEEEEEecCCeEEEEcC-CCeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEecc
Q 036314           21 SLHDDWVSAVDGSN-PGFILTGCYDNLGRVWKA-GGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFD   98 (347)
Q Consensus        21 ~~h~~~v~~~~~~~-~~~l~sg~~d~~i~iw~~-~~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~   98 (347)
                      -+|++.|+...... ....||++.|-+.++||. .|..++.|. |.--|.+++|+.+.    ..|+||+.+.-+|+||++
T Consensus        56 eghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~ds----~~lltgg~ekllrvfdln  130 (334)
T KOG0278|consen   56 EGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQDS----NYLLTGGQEKLLRVFDLN  130 (334)
T ss_pred             eccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEecccc----hhhhccchHHHhhhhhcc
Confidence            37999999888764 457889999999999994 677776665 77778999999844    469999999999999987


Q ss_pred             ccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccc
Q 036314           99 AEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEA  178 (347)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (347)
                      ..+.        +...+.+|.+.|+.+.|....+.|+|++.|++||+||.+++.                         .
T Consensus       131 ~p~A--------pp~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt-------------------------~  177 (334)
T KOG0278|consen  131 RPKA--------PPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGT-------------------------E  177 (334)
T ss_pred             CCCC--------CchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCc-------------------------E
Confidence            6432        234578999999999999988999999999999999998752                         2


Q ss_pred             cccccCCccceEEEEeCCCCeEEEEecCCcEEEEECCCCceeeeeeeCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCC
Q 036314          179 ISTLVGHTQCVSSVVWPQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEGSALIAAGGSDPILRIWDPRK  258 (347)
Q Consensus       179 ~~~~~~h~~~v~~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~  258 (347)
                      .+++. ....|.++..+.+..+++..+.+.|+.||..+-..++....+..+....++|+. ..+++|++|..++.||...
T Consensus       178 v~sL~-~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k-~~fVaGged~~~~kfDy~T  255 (334)
T KOG0278|consen  178 VQSLE-FNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKK-EFFVAGGEDFKVYKFDYNT  255 (334)
T ss_pred             EEEEe-cCCCCcceeeccCCCEEEEecCceeEEeccccccceeeccCccccccccccCCC-ceEEecCcceEEEEEeccC
Confidence            22222 234577777766667778888999999999988877776656667777787665 6888999999999999875


Q ss_pred             CCCCCCeEE-ecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccc
Q 036314          259 PGTSAPVFQ-FSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPL  308 (347)
Q Consensus       259 ~~~~~~~~~-~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~  308 (347)
                      ...   +-. .++|.+.|.|+.|+|+|. .-|+||.||+|+||....++..
T Consensus       256 geE---i~~~nkgh~gpVhcVrFSPdGE-~yAsGSEDGTirlWQt~~~~~~  302 (334)
T KOG0278|consen  256 GEE---IGSYNKGHFGPVHCVRFSPDGE-LYASGSEDGTIRLWQTTPGKTY  302 (334)
T ss_pred             Cce---eeecccCCCCceEEEEECCCCc-eeeccCCCceEEEEEecCCCch
Confidence            432   333 489999999999999995 6899999999999998776543

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.97  E-value=7.4e-29  Score=215.53  Aligned_cols=307  Identities=18%  Similarity=0.265  Sum_probs=214.5

Q ss_pred             EeccCCCCcCCCCCcCCceeeccCC-CCCEEEEEecCCeEEEEcCCCeE--E---EE-eeccCCceEEEEEeecCCCceE
Q 036314            9 IKAVAPQKEEEPSLHDDWVSAVDGS-NPGFILTGCYDNLGRVWKAGGVC--T---HI-LEGHCGAVSSVNIIKSDGLKYV   81 (347)
Q Consensus         9 ~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~l~sg~~d~~i~iw~~~~~~--~---~~-l~~h~~~V~~v~~~~~~~~~~~   81 (347)
                      ++.++..-|....+|+..|+++++. +|-.|+|||.|.+|++||..|.-  .   +. ...-+-.|++++|++.++    
T Consensus       152 ~~~IP~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~----  227 (641)
T KOG0772|consen  152 IKLIPGSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGD----  227 (641)
T ss_pred             hhcCCccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCC----
Confidence            4444333333467899999999987 46699999999999999986532  1   12 223345688999998443    


Q ss_pred             EEEEccCCCcEEEEeccccccccCc---cccceeeeeeccccceEEEEEeCCC-CEEEEeeCCCcEEEEecCCCCCCCcc
Q 036314           82 TVATASKDQTLRLWKFDAEELVNHP---KKIRSFKILRGHKASVHSIAAETSG-NMVCSGSWDCTISLWRTNDSDAAGNQ  157 (347)
Q Consensus        82 ~l~s~s~Dg~v~~wd~~~~~~~~~~---~~~~~~~~~~~h~~~V~~v~~s~~~-~~l~sgs~Dg~I~iwd~~~~~~~~~~  157 (347)
                      +|+..+.....+++|.+.-+...-.   .-++.+....||...++|..|+|+. ..++|++.||++|||++.+.......
T Consensus       228 ~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qV  307 (641)
T KOG0772|consen  228 QILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQV  307 (641)
T ss_pred             eEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeE
Confidence            4556666678999998765433211   1223334567999999999999987 58899999999999999865321111


Q ss_pred             ceeeeccCCCccccccccccccccccCCccceEEEEe-CCCCeEEEEecCCcEEEEECCCCc--eeeeee----eCeeeE
Q 036314          158 VSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGK--DLSDIF----CGKALN  230 (347)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~l~s~s~dg~v~vwd~~~~~--~~~~~~----~~~~~~  230 (347)
                      +   +..                ...+-.-.+...+| +++..||+|..||.|++||...-.  ....+.    .+..++
T Consensus       308 i---k~k----------------~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~It  368 (641)
T KOG0772|consen  308 I---KTK----------------PAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDIT  368 (641)
T ss_pred             E---eec----------------cCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCcee
Confidence            1   100                00122234566778 578889999999999999974321  111121    133689


Q ss_pred             EEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCC--CeeEEEeCCCCCeEEEEEeC------CCcEEEEEc
Q 036314          231 CIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNS--WISACKWHNKSWFHLISASY------DGKVMLWDL  302 (347)
Q Consensus       231 ~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~--~v~~v~~s~~~~~~l~s~s~------D~~i~lwd~  302 (347)
                      |+.|+++ ++.|++=+.|+++++||+++.+.+  +..+.+-..  .-..|.|||+.. +|++|..      -|++.+||.
T Consensus       369 si~FS~d-g~~LlSRg~D~tLKvWDLrq~kkp--L~~~tgL~t~~~~tdc~FSPd~k-li~TGtS~~~~~~~g~L~f~d~  444 (641)
T KOG0772|consen  369 SISFSYD-GNYLLSRGFDDTLKVWDLRQFKKP--LNVRTGLPTPFPGTDCCFSPDDK-LILTGTSAPNGMTAGTLFFFDR  444 (641)
T ss_pred             EEEeccc-cchhhhccCCCceeeeeccccccc--hhhhcCCCccCCCCccccCCCce-EEEecccccCCCCCceEEEEec
Confidence            9999765 567788899999999999976543  433333322  346789999984 6777753      467999999


Q ss_pred             CCCccceeecCCCCeEEEEeecC-CCEEEEccCCceEEEee
Q 036314          303 RTAWPLSVIDSHKDKVLCADWWR-GDSVISGGVDSKLCVSS  342 (347)
Q Consensus       303 ~~~~~~~~~~~h~~~v~~~~~~~-~~~l~s~s~D~~v~vw~  342 (347)
                      .+-+.++.+.--...|..+.|+| -++|..|+.||+++|+=
T Consensus       445 ~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyY  485 (641)
T KOG0772|consen  445 MTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVYY  485 (641)
T ss_pred             cceeeEEEecCCCceEEEEeecchhhheeeecCCCceEEEE
Confidence            99888888766678888999987 45677778899998873

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.97  E-value=2.2e-28  Score=209.76  Aligned_cols=256  Identities=20%  Similarity=0.310  Sum_probs=204.9

Q ss_pred             CCcCCceeeccCC--CCCEEEEEecCCeEEEEcCC---CeE--------EEEeeccCCceEEEEEeecCCCceEEEEEcc
Q 036314           21 SLHDDWVSAVDGS--NPGFILTGCYDNLGRVWKAG---GVC--------THILEGHCGAVSSVNIIKSDGLKYVTVATAS   87 (347)
Q Consensus        21 ~~h~~~v~~~~~~--~~~~l~sg~~d~~i~iw~~~---~~~--------~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s   87 (347)
                      ..|.+.|.-++.-  ++.++||++..+.+.|||.+   +..        -..|.||++.=.++.|.+...   -.|++++
T Consensus       121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~---g~Lls~~  197 (422)
T KOG0264|consen  121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQE---GTLLSGS  197 (422)
T ss_pred             ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccc---eeEeecc
Confidence            3688899988854  56799999999999999853   111        126889998778888877432   3689999


Q ss_pred             CCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCC-CEEEEeeCCCcEEEEecCCCCCCCccceeeeccCC
Q 036314           88 KDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSG-NMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGN  166 (347)
Q Consensus        88 ~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~-~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~  166 (347)
                      .|++|.+||++.....  .+...+...+.+|++.|..++|++.. .+|++++.|+.+.|||++...              
T Consensus       198 ~d~~i~lwdi~~~~~~--~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~--------------  261 (422)
T KOG0264|consen  198 DDHTICLWDINAESKE--DKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNT--------------  261 (422)
T ss_pred             CCCcEEEEeccccccC--CccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCC--------------
Confidence            9999999999764321  22345566789999999999998865 688899999999999998521              


Q ss_pred             CccccccccccccccccCCccceEEEEeC--CCCeEEEEecCCcEEEEECCCC-ceeeeeee-CeeeEEEEeeCCCCcEE
Q 036314          167 NQVEEPQLEGEAISTLVGHTQCVSSVVWP--QQETIYSASWDHSVRTWDVEMG-KDLSDIFC-GKALNCIDIGGEGSALI  242 (347)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~l~s~s~dg~v~vwd~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~l  242 (347)
                               .++.....+|+..|+++.|+  ++..||++|.|++|++||+|.- +++..+.. ...+.++.|+|....++
T Consensus       262 ---------~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvL  332 (422)
T KOG0264|consen  262 ---------SKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVL  332 (422)
T ss_pred             ---------CCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCcee
Confidence                     12233557799999999994  4556899999999999999874 44455543 34789999999999999


Q ss_pred             EEecCCCcEEEEeCCCCC-----------CCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCC
Q 036314          243 AAGGSDPILRIWDPRKPG-----------TSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRT  304 (347)
Q Consensus       243 a~~~~d~~i~iwd~~~~~-----------~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~  304 (347)
                      |+++.|+.+.+||+.+-+           ++.+++.-.||+..|..+.|+|..++.++|.+.|+.+.||++..
T Consensus       333 ASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~  405 (422)
T KOG0264|consen  333 ASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE  405 (422)
T ss_pred             EecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence            999999999999986422           23456888999999999999999999999999999999999864

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=8e-29  Score=196.81  Aligned_cols=251  Identities=20%  Similarity=0.342  Sum_probs=189.6

Q ss_pred             EeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeC--CCCEEEE
Q 036314           59 ILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAET--SGNMVCS  136 (347)
Q Consensus        59 ~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~--~~~~l~s  136 (347)
                      +-..|.+.|..+.....    +..|||+|.|++|||+.+..+..      ...+.+|+||.+||..++|..  .|.+|||
T Consensus         6 idt~H~D~IHda~lDyy----gkrlATcsSD~tVkIf~v~~n~~------s~ll~~L~Gh~GPVwqv~wahPk~G~iLAS   75 (299)
T KOG1332|consen    6 IDTQHEDMIHDAQLDYY----GKRLATCSSDGTVKIFEVRNNGQ------SKLLAELTGHSGPVWKVAWAHPKFGTILAS   75 (299)
T ss_pred             hhhhhhhhhhHhhhhhh----cceeeeecCCccEEEEEEcCCCC------ceeeeEecCCCCCeeEEeecccccCcEeeE
Confidence            44578887776554332    24799999999999999876532      356778999999999999965  7999999


Q ss_pred             eeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEeCC---CCeEEEEecCCcEEEEE
Q 036314          137 GSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWPQ---QETIYSASWDHSVRTWD  213 (347)
Q Consensus       137 gs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~~~l~s~s~dg~v~vwd  213 (347)
                      +++||.|.||.-+.+.-                       +.......|...|++++|.+   +-.|++++.||.|.|.+
T Consensus        76 csYDgkVIiWke~~g~w-----------------------~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~  132 (299)
T KOG1332|consen   76 CSYDGKVIIWKEENGRW-----------------------TKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLT  132 (299)
T ss_pred             eecCceEEEEecCCCch-----------------------hhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEE
Confidence            99999999998665421                       23445677999999999943   44699999999999998


Q ss_pred             CCCC-c-eeeeee-eC-eeeEEEEeeCC---C----------CcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCee
Q 036314          214 VEMG-K-DLSDIF-CG-KALNCIDIGGE---G----------SALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWIS  276 (347)
Q Consensus       214 ~~~~-~-~~~~~~-~~-~~~~~~~~~~~---~----------~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~  276 (347)
                      .+.. . ....+. .+ -.++.+.+.|.   +          ...|++|+.|+.|+||+.... ......+|.+|.++|+
T Consensus       133 ~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~-~w~~e~~l~~H~dwVR  211 (299)
T KOG1332|consen  133 YDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSD-SWKLERTLEGHKDWVR  211 (299)
T ss_pred             EcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCc-chhhhhhhhhcchhhh
Confidence            7654 2 122222 12 24566666553   1          135899999999999997753 3445567999999999


Q ss_pred             EEEeCCCC---CeEEEEEeCCCcEEEEEcCCC-c--cceeecCCCCeEEEEeec-CCCEEEEccCCceEEEeec
Q 036314          277 ACKWHNKS---WFHLISASYDGKVMLWDLRTA-W--PLSVIDSHKDKVLCADWW-RGDSVISGGVDSKLCVSSG  343 (347)
Q Consensus       277 ~v~~s~~~---~~~l~s~s~D~~i~lwd~~~~-~--~~~~~~~h~~~v~~~~~~-~~~~l~s~s~D~~v~vw~~  343 (347)
                      +++|.|..   ...|||+|.||++.||-.+.. +  ....+......++.+.|| .|+.|+.++.|+.|.+|.-
T Consensus       212 DVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke  285 (299)
T KOG1332|consen  212 DVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKE  285 (299)
T ss_pred             hhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEe
Confidence            99999975   246999999999999977632 1  123345567889999998 5899999999999999963

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=1.2e-28  Score=219.65  Aligned_cols=307  Identities=21%  Similarity=0.295  Sum_probs=227.6

Q ss_pred             ceEEEEEEeccCCCCcCCCCCcCCcee---eccCC--CCCEEEEEecCCeEEEEcCC---C----eEEEEeeccCCceEE
Q 036314            2 KVLEIEYIKAVAPQKEEEPSLHDDWVS---AVDGS--NPGFILTGCYDNLGRVWKAG---G----VCTHILEGHCGAVSS   69 (347)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~h~~~v~---~~~~~--~~~~l~sg~~d~~i~iw~~~---~----~~~~~l~~h~~~V~~   69 (347)
                      |...+.|+.+-...+     -|...|.   ++..+  +++||.|||.||.||+|+..   +    .+...++.|.+-|+.
T Consensus         4 kk~kvsyVi~D~~e~-----qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVND   78 (735)
T KOG0308|consen    4 KKKKVSYVIRDENEK-----QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVND   78 (735)
T ss_pred             ceeEEEEEccchhhh-----hccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhh
Confidence            556788885443222     3334444   44443  56689999999999999863   2    256789999999999


Q ss_pred             EEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeeeeccccceEEEEE-eCCCCEEEEeeCCCcEEEEec
Q 036314           70 VNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAA-ETSGNMVCSGSWDCTISLWRT  148 (347)
Q Consensus        70 v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~-s~~~~~l~sgs~Dg~I~iwd~  148 (347)
                      +.....+    ..|+|+|.|-+|++|+...+.       --+..+++.|++-|.|+++ .++..++||||.|+.|.+||+
T Consensus        79 iiL~~~~----~tlIS~SsDtTVK~W~~~~~~-------~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDi  147 (735)
T KOG0308|consen   79 IILCGNG----KTLISASSDTTVKVWNAHKDN-------TFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDI  147 (735)
T ss_pred             HHhhcCC----CceEEecCCceEEEeecccCc-------chhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEc
Confidence            8876633    369999999999999987542       1256678899999999999 888899999999999999999


Q ss_pred             CCCCCCCccceeeeccCCCcccccccccccccccc-CCccceEEEEeC-CCCeEEEEecCCcEEEEECCCCceeeeeeeC
Q 036314          149 NDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLV-GHTQCVSSVVWP-QQETIYSASWDHSVRTWDVEMGKDLSDIFCG  226 (347)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~-~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~  226 (347)
                      +.+...- ..              .+.......+. |+...|++++.. .+..+++|+..+-+++||.++++.+..+..+
T Consensus       148 n~~~~~l-~~--------------s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGH  212 (735)
T KOG0308|consen  148 NTGTATL-VA--------------SFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGH  212 (735)
T ss_pred             cCcchhh-hh--------------hccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeecc
Confidence            8653200 00              00001122233 788899999974 4557899999999999999999999888754


Q ss_pred             e-eeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCC
Q 036314          227 K-ALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTA  305 (347)
Q Consensus       227 ~-~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~  305 (347)
                      . .+.++-+.. ++..+++++.||+|++||+..   .+.++++..|.+.|+++..+|+= ..+.+|+.||.|..=|+++.
T Consensus       213 TdNVr~ll~~d-DGt~~ls~sSDgtIrlWdLgq---QrCl~T~~vH~e~VWaL~~~~sf-~~vYsG~rd~~i~~Tdl~n~  287 (735)
T KOG0308|consen  213 TDNVRVLLVND-DGTRLLSASSDGTIRLWDLGQ---QRCLATYIVHKEGVWALQSSPSF-THVYSGGRDGNIYRTDLRNP  287 (735)
T ss_pred             ccceEEEEEcC-CCCeEeecCCCceEEeeeccc---cceeeeEEeccCceEEEeeCCCc-ceEEecCCCCcEEecccCCc
Confidence            3 567777754 556778999999999999985   34578899999999999998765 46999999999999999985


Q ss_pred             ccceeecCCCCeEEEEeec-CCCEEEEccCCceEEEeecc
Q 036314          306 WPLSVIDSHKDKVLCADWW-RGDSVISGGVDSKLCVSSGV  344 (347)
Q Consensus       306 ~~~~~~~~h~~~v~~~~~~-~~~~l~s~s~D~~v~vw~~~  344 (347)
                      .....+.-...+|..+..+ ..+.+-.++.|+.|+-|.+.
T Consensus       288 ~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~  327 (735)
T KOG0308|consen  288 AKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLE  327 (735)
T ss_pred             hhheEeecCCCchhhhhhccccCCceeeeccccceecCCc
Confidence            4333343334566666654 23334556778888888765

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=1.4e-26  Score=190.66  Aligned_cols=274  Identities=17%  Similarity=0.221  Sum_probs=205.4

Q ss_pred             cCCceeeccCC-CCCEEEEEecCCeEEEEcC-CCeEEEEeeccCCceEEEEEeecCCCceEEEEEccC--CCcEEEEecc
Q 036314           23 HDDWVSAVDGS-NPGFILTGCYDNLGRVWKA-GGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASK--DQTLRLWKFD   98 (347)
Q Consensus        23 h~~~v~~~~~~-~~~~l~sg~~d~~i~iw~~-~~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~--Dg~v~~wd~~   98 (347)
                      ..+.|.+++|+ +|.+|++++.|.+++|||. .|.+++++..+.-.+..+.|.....    .++.+|.  |.+||.-++.
T Consensus        13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~----~~i~sStk~d~tIryLsl~   88 (311)
T KOG1446|consen   13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSN----TVIHSSTKEDDTIRYLSLH   88 (311)
T ss_pred             CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCc----eEEEccCCCCCceEEEEee
Confidence            56889999998 5678999999999999996 5888888888877788888865432    3444554  8899999998


Q ss_pred             ccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccc
Q 036314           99 AEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEA  178 (347)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (347)
                      +++         .++.|.||...|++++.+|-++.++|+|.|++||+||++...+.+..                     
T Consensus        89 dNk---------ylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l---------------------  138 (311)
T KOG1446|consen   89 DNK---------YLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLL---------------------  138 (311)
T ss_pred             cCc---------eEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEE---------------------
Confidence            765         56779999999999999999999999999999999999865433211                     


Q ss_pred             cccccCCccceEEEEe-CCCCeEEEEecCCcEEEEECCCC-cee-eee--e--eCeeeEEEEeeCCCCcEEEEecCCCcE
Q 036314          179 ISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMG-KDL-SDI--F--CGKALNCIDIGGEGSALIAAGGSDPIL  251 (347)
Q Consensus       179 ~~~~~~h~~~v~~~~~-~~~~~l~s~s~dg~v~vwd~~~~-~~~-~~~--~--~~~~~~~~~~~~~~~~~la~~~~d~~i  251 (347)
                          .....  ...+| |.|-.+|.+.....|++||++.- +-. ..+  .  .....+.+.|++++. .++.++..+.+
T Consensus       139 ----~~~~~--pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK-~iLlsT~~s~~  211 (311)
T KOG1446|consen  139 ----NLSGR--PIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGK-SILLSTNASFI  211 (311)
T ss_pred             ----ecCCC--cceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCC-EEEEEeCCCcE
Confidence                00111  22355 45666777766669999999863 222 222  1  123567889977655 55566778999


Q ss_pred             EEEeCCCCCCCCCeEEecCCCCCe---eEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecC-CCCeEEEEeecCCC
Q 036314          252 RIWDPRKPGTSAPVFQFSSHNSWI---SACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDS-HKDKVLCADWWRGD  327 (347)
Q Consensus       252 ~iwd~~~~~~~~~~~~~~~h~~~v---~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~-h~~~v~~~~~~~~~  327 (347)
                      ++.|.-.+.   ...+++++...-   .+..|.||+. ++++|+.||+|.+|+++++..+..+++ +.+.+.|+.|+|..
T Consensus       212 ~~lDAf~G~---~~~tfs~~~~~~~~~~~a~ftPds~-Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~  287 (311)
T KOG1446|consen  212 YLLDAFDGT---VKSTFSGYPNAGNLPLSATFTPDSK-FVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRY  287 (311)
T ss_pred             EEEEccCCc---EeeeEeeccCCCCcceeEEECCCCc-EEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCce
Confidence            999976543   355666665432   5678999995 699999999999999999999999988 78999999998875


Q ss_pred             EEEEccCCceEEEee
Q 036314          328 SVISGGVDSKLCVSS  342 (347)
Q Consensus       328 ~l~s~s~D~~v~vw~  342 (347)
                      .+ -++.+..+.+|-
T Consensus       288 ~m-f~sa~s~l~fw~  301 (311)
T KOG1446|consen  288 AM-FVSASSNLVFWL  301 (311)
T ss_pred             ee-eeecCceEEEEe
Confidence            32 234567787873

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.96  E-value=2.1e-29  Score=217.33  Aligned_cols=207  Identities=26%  Similarity=0.425  Sum_probs=178.1

Q ss_pred             eeeeeeccccceEEEEEeC-CCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccce
Q 036314          111 SFKILRGHKASVHSIAAET-SGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCV  189 (347)
Q Consensus       111 ~~~~~~~h~~~V~~v~~s~-~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v  189 (347)
                      .+.++.||...|+++.|.| .+.+|+|++.|+.|+||++.+.                        +.+++++.+|..+|
T Consensus       206 ~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~------------------------~~~lrtf~gH~k~V  261 (503)
T KOG0282|consen  206 LSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDD------------------------RRCLRTFKGHRKPV  261 (503)
T ss_pred             heeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecC------------------------cceehhhhcchhhh
Confidence            4457899999999999999 8899999999999999998652                        46789999999999


Q ss_pred             EEEEeC-CCCeEEEEecCCcEEEEECCCCceeeeeeeCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEe
Q 036314          190 SSVVWP-QQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQF  268 (347)
Q Consensus       190 ~~~~~~-~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~  268 (347)
                      .++.|+ ++..++|+|.|+.+++||+++|+++..+..+..+.|+.+.|++.+.+++|+.|+.|+.||+|.++   .++.+
T Consensus       262 rd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~k---vvqeY  338 (503)
T KOG0282|consen  262 RDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGK---VVQEY  338 (503)
T ss_pred             hhhhccccCCeeeeeecceeeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchH---HHHHH
Confidence            999996 67789999999999999999999999888888999999999988999999999999999999643   36677


Q ss_pred             cCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccc----------------------------------------
Q 036314          269 SSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPL----------------------------------------  308 (347)
Q Consensus       269 ~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~----------------------------------------  308 (347)
                      ..|-+.|..+.|-+++. .+++++.|++++||+.+.+.++                                        
T Consensus       339 d~hLg~i~~i~F~~~g~-rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~  417 (503)
T KOG0282|consen  339 DRHLGAILDITFVDEGR-RFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPP  417 (503)
T ss_pred             HhhhhheeeeEEccCCc-eEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccc
Confidence            88999999999999986 5999999999999998764321                                        


Q ss_pred             ------eeecCCCCe--EEEEeecC-CCEEEEccCCceEEEeeccc
Q 036314          309 ------SVIDSHKDK--VLCADWWR-GDSVISGGVDSKLCVSSGVS  345 (347)
Q Consensus       309 ------~~~~~h~~~--v~~~~~~~-~~~l~s~s~D~~v~vw~~~~  345 (347)
                            +.++||..+  -..+.||| |.+|++|+.||.+.+|+..+
T Consensus       418 ~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt  463 (503)
T KOG0282|consen  418 FRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKT  463 (503)
T ss_pred             cccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechh
Confidence                  124566533  24578885 77899999999999999764

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.96  E-value=1.1e-27  Score=224.76  Aligned_cols=287  Identities=18%  Similarity=0.292  Sum_probs=222.1

Q ss_pred             cCCceeeccCCC-CCEEEEEe--cCCeEEEEcCC-------------CeEEEEeeccCCceEEEEEeecCCCceEEEEEc
Q 036314           23 HDDWVSAVDGSN-PGFILTGC--YDNLGRVWKAG-------------GVCTHILEGHCGAVSSVNIIKSDGLKYVTVATA   86 (347)
Q Consensus        23 h~~~v~~~~~~~-~~~l~sg~--~d~~i~iw~~~-------------~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~   86 (347)
                      ++..|-+++.++ +..+||||  .|+.++||+..             .+.+-++..|.+.|+|+.|++++    .+||+|
T Consensus        12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG----~~lAsG   87 (942)
T KOG0973|consen   12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDG----SYLASG   87 (942)
T ss_pred             CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCC----CeEeec
Confidence            346678888874 56899999  99999999742             12234577899999999999944    589999


Q ss_pred             cCCCcEEEEeccc----ccc-----ccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCcc
Q 036314           87 SKDQTLRLWKFDA----EEL-----VNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQ  157 (347)
Q Consensus        87 s~Dg~v~~wd~~~----~~~-----~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~  157 (347)
                      |+|..|.+|+...    ..+     ....+.++...++++|+..|..++|+|++.+++|+|.|++|.|||..+.      
T Consensus        88 SDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF------  161 (942)
T KOG0973|consen   88 SDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTF------  161 (942)
T ss_pred             cCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccc------
Confidence            9999999999873    111     2234567888999999999999999999999999999999999997653      


Q ss_pred             ceeeeccCCCccccccccccccccccCCccceEEEEe-CCCCeEEEEecCCcEEEEECCCCceeeeeee-------Ceee
Q 036314          158 VSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFC-------GKAL  229 (347)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~-------~~~~  229 (347)
                                         +.+..+.+|...|..+.| |-|++++|-+.|++|++|++.+-...+.+..       ...+
T Consensus       162 -------------------~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f  222 (942)
T KOG0973|consen  162 -------------------ELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFF  222 (942)
T ss_pred             -------------------eeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCccee
Confidence                               456788999999999999 6799999999999999999766433333321       1235


Q ss_pred             EEEEeeCCCCcEEEEe----cCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCC------C---------C-eEEE
Q 036314          230 NCIDIGGEGSALIAAG----GSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNK------S---------W-FHLI  289 (347)
Q Consensus       230 ~~~~~~~~~~~~la~~----~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~------~---------~-~~l~  289 (347)
                      ..+.|+|+ +.+|++.    +.-.++.|.+..   ....-..|-||.+.+.+++|+|.      .         . ..+|
T Consensus       223 ~RlSWSPD-G~~las~nA~n~~~~~~~IieR~---tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~A  298 (942)
T KOG0973|consen  223 LRLSWSPD-GHHLASPNAVNGGKSTIAIIERG---TWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAA  298 (942)
T ss_pred             eecccCCC-cCeecchhhccCCcceeEEEecC---CceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEE
Confidence            66788665 4566654    234577777642   33445678899999999999983      1         1 1689


Q ss_pred             EEeCCCcEEEEEcCCCccceee-cCCCCeEEEEeecC-CCEEEEccCCceEEEee
Q 036314          290 SASYDGKVMLWDLRTAWPLSVI-DSHKDKVLCADWWR-GDSVISGGVDSKLCVSS  342 (347)
Q Consensus       290 s~s~D~~i~lwd~~~~~~~~~~-~~h~~~v~~~~~~~-~~~l~s~s~D~~v~vw~  342 (347)
                      +||.|++|-||.....+|+... +-....|..+.|+| |..|..+|.||+|.+-.
T Consensus       299 vgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~  353 (942)
T KOG0973|consen  299 VGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIH  353 (942)
T ss_pred             EecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEE
Confidence            9999999999998777776543 22345799999985 66799999999998754

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=9.2e-28  Score=197.57  Aligned_cols=284  Identities=22%  Similarity=0.351  Sum_probs=205.8

Q ss_pred             EEEEEecCCeEEEEcCCCeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeeee
Q 036314           37 FILTGCYDNLGRVWKAGGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILR  116 (347)
Q Consensus        37 ~l~sg~~d~~i~iw~~~~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~  116 (347)
                      .|++.=.|+++..     ..++.|.||.+.|..++.....    ..+.++|.|.+.+||.++++.         ++.++.
T Consensus       126 rivssFk~~t~~~-----~lvre~~GHkDGiW~Vaa~~tq----pi~gtASADhTA~iWs~Esg~---------CL~~Y~  187 (481)
T KOG0300|consen  126 RIVSSFKDGTVKF-----RLVRELEGHKDGIWHVAADSTQ----PICGTASADHTARIWSLESGA---------CLATYT  187 (481)
T ss_pred             hheeeecCCceeE-----eehhhhcccccceeeehhhcCC----cceeecccccceeEEeecccc---------ceeeec
Confidence            3444444444322     3456789999999998765422    268999999999999999875         556788


Q ss_pred             ccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCc---------------ccccccccccccc
Q 036314          117 GHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQ---------------VEEPQLEGEAIST  181 (347)
Q Consensus       117 ~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~  181 (347)
                      ||.+.|+++.|++.+.+++++|.|++..||...-.-...............+               -.+..--..++..
T Consensus       188 GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~  267 (481)
T KOG0300|consen  188 GHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMR  267 (481)
T ss_pred             ccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeee
Confidence            9999999999999999999999999999997321100000000000000000               0000111244567


Q ss_pred             ccCCccceEEEEe-CCCCeEEEEecCCcEEEEECCCCceeeeeeeC-eeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCC
Q 036314          182 LVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFCG-KALNCIDIGGEGSALIAAGGSDPILRIWDPRKP  259 (347)
Q Consensus       182 ~~~h~~~v~~~~~-~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~  259 (347)
                      +.+|...|.+..| ..+++++++|+|++-.+||++++..+..+..+ ...+...-+| ...++++.+.|.+.++||.+. 
T Consensus       268 ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHp-tQrLVvTsSrDtTFRLWDFRe-  345 (481)
T KOG0300|consen  268 LTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHP-TQRLVVTSSRDTTFRLWDFRE-  345 (481)
T ss_pred             eeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCC-cceEEEEeccCceeEeccchh-
Confidence            8899999988888 46788999999999999999999988776543 3444444444 456889999999999999883 


Q ss_pred             CCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCC-ccceeecCCCCeEEEEeecCCC-EEEEccCCce
Q 036314          260 GTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTA-WPLSVIDSHKDKVLCADWWRGD-SVISGGVDSK  337 (347)
Q Consensus       260 ~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~-~~~~~~~~h~~~v~~~~~~~~~-~l~s~s~D~~  337 (347)
                       ....+..|.||.+.|.++.|+-+.  .+++||.|.+|++||+++. .++.++.. ..++..++.+.|. .+|---.+.-
T Consensus       346 -aI~sV~VFQGHtdtVTS~vF~~dd--~vVSgSDDrTvKvWdLrNMRsplATIRt-dS~~NRvavs~g~~iIAiPhDNRq  421 (481)
T KOG0300|consen  346 -AIQSVAVFQGHTDTVTSVVFNTDD--RVVSGSDDRTVKVWDLRNMRSPLATIRT-DSPANRVAVSKGHPIIAIPHDNRQ  421 (481)
T ss_pred             -hcceeeeecccccceeEEEEecCC--ceeecCCCceEEEeeeccccCcceeeec-CCccceeEeecCCceEEeccCCce
Confidence             344577899999999999998875  4999999999999999875 45667653 4577888888766 4555556677


Q ss_pred             EEEeecc
Q 036314          338 LCVSSGV  344 (347)
Q Consensus       338 v~vw~~~  344 (347)
                      |++++.+
T Consensus       422 vRlfDln  428 (481)
T KOG0300|consen  422 VRLFDLN  428 (481)
T ss_pred             EEEEecC
Confidence            8888765

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=4.7e-27  Score=193.10  Aligned_cols=259  Identities=19%  Similarity=0.276  Sum_probs=200.2

Q ss_pred             EEEEEecCCeEEEEcCC--C-------e----EEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccc
Q 036314           37 FILTGCYDNLGRVWKAG--G-------V----CTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELV  103 (347)
Q Consensus        37 ~l~sg~~d~~i~iw~~~--~-------~----~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~  103 (347)
                      .|+.|++...|.-+++.  .       +    ....+..|.+++++++++.      .++||||.|-+|+|||+....  
T Consensus         3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs~------~~~aSGssDetI~IYDm~k~~--   74 (362)
T KOG0294|consen    3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVSG------PYVASGSSDETIHIYDMRKRK--   74 (362)
T ss_pred             eEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEecc------eeEeccCCCCcEEEEeccchh--
Confidence            36778887777666531  1       1    1345778999999999854      479999999999999997643  


Q ss_pred             cCccccceeeeeeccccceEEEEEeCCCC--EEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCcccccccccccccc
Q 036314          104 NHPKKIRSFKILRGHKASVHSIAAETSGN--MVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAIST  181 (347)
Q Consensus       104 ~~~~~~~~~~~~~~h~~~V~~v~~s~~~~--~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (347)
                             .+..+..|.+.|+++.|.+.-.  .|+||+.||.|.+|+..+.                         .++.+
T Consensus        75 -------qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W-------------------------~~~~s  122 (362)
T KOG0294|consen   75 -------QLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSW-------------------------ELLKS  122 (362)
T ss_pred             -------hhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCe-------------------------EEeee
Confidence                   3445678999999999988764  8999999999999998653                         34678


Q ss_pred             ccCCccceEEEEe-CCCCeEEEEecCCcEEEEECCCCceeeeeeeCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCC
Q 036314          182 LVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPG  260 (347)
Q Consensus       182 ~~~h~~~v~~~~~-~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~  260 (347)
                      +++|.+.|+.++. |.++.-++.+.|+.+++||+-.|+....+...+....+.|.+.+. .++..+ .+.|-+|.+....
T Consensus       123 lK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd-~F~v~~-~~~i~i~q~d~A~  200 (362)
T KOG0294|consen  123 LKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGD-HFVVSG-RNKIDIYQLDNAS  200 (362)
T ss_pred             ecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCC-EEEEEe-ccEEEEEecccHh
Confidence            8999999999986 566777899999999999998887666555555566688876555 444444 4678999876421


Q ss_pred             CCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecCCCCeEEEEeec--C-CCEEEEccCCce
Q 036314          261 TSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKVLCADWW--R-GDSVISGGVDSK  337 (347)
Q Consensus       261 ~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h~~~v~~~~~~--~-~~~l~s~s~D~~  337 (347)
                          ++........+.++.|...+  .|++|..|+.|++||-+...++..+.+|++.|-.+.+-  | +.+|+|+|.||.
T Consensus       201 ----v~~~i~~~~r~l~~~~l~~~--~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~  274 (362)
T KOG0294|consen  201 ----VFREIENPKRILCATFLDGS--ELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGF  274 (362)
T ss_pred             ----HhhhhhccccceeeeecCCc--eEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCce
Confidence                11111222556777776443  59999999999999999988899999999999998863  2 568999999999


Q ss_pred             EEEeec
Q 036314          338 LCVSSG  343 (347)
Q Consensus       338 v~vw~~  343 (347)
                      |+||+.
T Consensus       275 I~vWd~  280 (362)
T KOG0294|consen  275 IKVWDI  280 (362)
T ss_pred             EEEEEc
Confidence            999985

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=2.7e-27  Score=193.40  Aligned_cols=241  Identities=17%  Similarity=0.305  Sum_probs=185.5

Q ss_pred             eccCCceEEEEEeecCCCceEEEEEccCCCcEEEEecccc-ccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeC
Q 036314           61 EGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAE-ELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSW  139 (347)
Q Consensus        61 ~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~-~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~  139 (347)
                      ...++.|.+|+|+|...   .+++.+|.||+||+|+++.. .+.       + +....|.++|.+++|+.||..+++|+.
T Consensus        24 ~pP~DsIS~l~FSP~~~---~~~~A~SWD~tVR~wevq~~g~~~-------~-ka~~~~~~PvL~v~WsddgskVf~g~~   92 (347)
T KOG0647|consen   24 NPPEDSISALAFSPQAD---NLLAAGSWDGTVRIWEVQNSGQLV-------P-KAQQSHDGPVLDVCWSDDGSKVFSGGC   92 (347)
T ss_pred             CCcccchheeEeccccC---ceEEecccCCceEEEEEecCCccc-------c-hhhhccCCCeEEEEEccCCceEEeecc
Confidence            34668899999999432   36779999999999999863 221       1 234569999999999999999999999


Q ss_pred             CCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEe-CC--CCeEEEEecCCcEEEEECCC
Q 036314          140 DCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW-PQ--QETIYSASWDHSVRTWDVEM  216 (347)
Q Consensus       140 Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~--~~~l~s~s~dg~v~vwd~~~  216 (347)
                      |+.+++||+.++.                          ......|..+|..+.| +.  -+.|++||+|++||.||++.
T Consensus        93 Dk~~k~wDL~S~Q--------------------------~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~  146 (347)
T KOG0647|consen   93 DKQAKLWDLASGQ--------------------------VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRS  146 (347)
T ss_pred             CCceEEEEccCCC--------------------------eeeeeecccceeEEEEecCCCcceeEecccccceeecccCC
Confidence            9999999998652                          3355669999999998 32  34689999999999999999


Q ss_pred             CceeeeeeeCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCC-CeeEEEeCCCCCeEEEEEeCCC
Q 036314          217 GKDLSDIFCGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNS-WISACKWHNKSWFHLISASYDG  295 (347)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~-~v~~v~~s~~~~~~l~s~s~D~  295 (347)
                      ..++.++...+.+++++.-.+   +++.+..+..|.+|+++.+...  .......-+ .+++++..++... .|-|+-+|
T Consensus       147 ~~pv~t~~LPeRvYa~Dv~~p---m~vVata~r~i~vynL~n~~te--~k~~~SpLk~Q~R~va~f~d~~~-~alGsiEG  220 (347)
T KOG0647|consen  147 SNPVATLQLPERVYAADVLYP---MAVVATAERHIAVYNLENPPTE--FKRIESPLKWQTRCVACFQDKDG-FALGSIEG  220 (347)
T ss_pred             CCeeeeeeccceeeehhccCc---eeEEEecCCcEEEEEcCCCcch--hhhhcCcccceeeEEEEEecCCc-eEeeeecc
Confidence            999998888888888887433   5667778999999999764221  111111122 3678887777665 58899999


Q ss_pred             cEEEEEcCCCcc--ceeecCCCC---------eEEEEeecC-CCEEEEccCCceEEEeecc
Q 036314          296 KVMLWDLRTAWP--LSVIDSHKD---------KVLCADWWR-GDSVISGGVDSKLCVSSGV  344 (347)
Q Consensus       296 ~i~lwd~~~~~~--~~~~~~h~~---------~v~~~~~~~-~~~l~s~s~D~~v~vw~~~  344 (347)
                      ++.|..++.+.+  -.+|..|..         +|.+++|+| -..|+|+|.||+..+|+-.
T Consensus       221 rv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkd  281 (347)
T KOG0647|consen  221 RVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKD  281 (347)
T ss_pred             eEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecch
Confidence            999999988633  445666652         456788987 4579999999999999853

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.96  E-value=6.7e-29  Score=210.45  Aligned_cols=247  Identities=22%  Similarity=0.326  Sum_probs=199.9

Q ss_pred             CeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCE
Q 036314           54 GVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNM  133 (347)
Q Consensus        54 ~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~  133 (347)
                      ..+...+..|.+.|..+.|.+..+    .|++|+.|..|++|++..++.       ....+|.|..++|+++.|.++++.
T Consensus       165 S~~~~~ld~h~gev~~v~~l~~sd----tlatgg~Dr~Ik~W~v~~~k~-------~~~~tLaGs~g~it~~d~d~~~~~  233 (459)
T KOG0288|consen  165 SRALFVLDAHEGEVHDVEFLRNSD----TLATGGSDRIIKLWNVLGEKS-------ELISTLAGSLGNITSIDFDSDNKH  233 (459)
T ss_pred             hhhhhhhhccccccceeEEccCcc----hhhhcchhhhhhhhhcccchh-------hhhhhhhccCCCcceeeecCCCce
Confidence            344566889999999999987433    699999999999999876542       345678888999999999999999


Q ss_pred             EEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEeCCCC-eEEEEecCCcEEEE
Q 036314          134 VCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWPQQE-TIYSASWDHSVRTW  212 (347)
Q Consensus       134 l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~s~dg~v~vw  212 (347)
                      +++++.|+.+++|++.+.                         ....++.||++.|.++.|..+. .+++++.|.++++|
T Consensus       234 ~iAas~d~~~r~Wnvd~~-------------------------r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~W  288 (459)
T KOG0288|consen  234 VIAASNDKNLRLWNVDSL-------------------------RLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLW  288 (459)
T ss_pred             EEeecCCCceeeeeccch-------------------------hhhhhhcccccceeeehhhccccceeeccccchhhhh
Confidence            999999999999998753                         2355789999999999885444 39999999999999


Q ss_pred             ECCCCceeeeeeeCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEe
Q 036314          213 DVEMGKDLSDIFCGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISAS  292 (347)
Q Consensus       213 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s  292 (347)
                      |+....+.++.........+...   ...+++|..|++|++||++.+.   +....+.+. .|.++..++++. .|.+++
T Consensus       289 Dl~k~~C~kt~l~~S~cnDI~~~---~~~~~SgH~DkkvRfwD~Rs~~---~~~sv~~gg-~vtSl~ls~~g~-~lLsss  360 (459)
T KOG0288|consen  289 DLQKAYCSKTVLPGSQCNDIVCS---ISDVISGHFDKKVRFWDIRSAD---KTRSVPLGG-RVTSLDLSMDGL-ELLSSS  360 (459)
T ss_pred             hhhhhheeccccccccccceEec---ceeeeecccccceEEEeccCCc---eeeEeecCc-ceeeEeeccCCe-EEeeec
Confidence            99998888877766555555553   3467899999999999998642   345555555 899999999985 588889


Q ss_pred             CCCcEEEEEcCCCccceeecCCC----CeEEEEeecC-CCEEEEccCCceEEEeecc
Q 036314          293 YDGKVMLWDLRTAWPLSVIDSHK----DKVLCADWWR-GDSVISGGVDSKLCVSSGV  344 (347)
Q Consensus       293 ~D~~i~lwd~~~~~~~~~~~~h~----~~v~~~~~~~-~~~l~s~s~D~~v~vw~~~  344 (347)
                      -|.++++.|+++.+..+.+.+-.    .....+.||| +.|+|+||.||.|+||+..
T Consensus       361 RDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~  417 (459)
T KOG0288|consen  361 RDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVF  417 (459)
T ss_pred             CCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEcc
Confidence            99999999999987766664321    2367899987 5589999999999999864

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=8.8e-27  Score=190.93  Aligned_cols=259  Identities=22%  Similarity=0.311  Sum_probs=190.7

Q ss_pred             eeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeC--CCCEEEEe
Q 036314           60 LEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAET--SGNMVCSG  137 (347)
Q Consensus        60 l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~--~~~~l~sg  137 (347)
                      -.+|.+-|.++.|.+.+    +.+||||.|++|+|||.+..     ...+.+....+.|.+.|..|.|.+  .|+.+|++
T Consensus         9 ~s~h~DlihdVs~D~~G----RRmAtCSsDq~vkI~d~~~~-----s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~c   79 (361)
T KOG2445|consen    9 DSGHKDLIHDVSFDFYG----RRMATCSSDQTVKIWDSTSD-----SGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATC   79 (361)
T ss_pred             ccCCcceeeeeeecccC----ceeeeccCCCcEEEEeccCC-----CCceEEeeeEEecCCcEEEEEecCccccceEEEE
Confidence            34788999999998755    36999999999999997543     245667778899999999999843  58999999


Q ss_pred             eCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEeC---CCCeEEEEecCCcEEEEEC
Q 036314          138 SWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWP---QQETIYSASWDHSVRTWDV  214 (347)
Q Consensus       138 s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~---~~~~l~s~s~dg~v~vwd~  214 (347)
                      |.|++++||.-..........                .-....++......|.++.|.   -|-.+++++.||++|||+.
T Consensus        80 S~Drtv~iWEE~~~~~~~~~~----------------~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA  143 (361)
T KOG2445|consen   80 SYDRTVSIWEEQEKSEEAHGR----------------RWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEA  143 (361)
T ss_pred             ecCCceeeeeecccccccccc----------------eeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEec
Confidence            999999999642111111000                001234556666788999884   3557999999999999998


Q ss_pred             CCCceeeeee--------------eCeeeEEEEeeCC--CCcEEEEecCC-----CcEEEEeCCCCC-CCCCeEEecCCC
Q 036314          215 EMGKDLSDIF--------------CGKALNCIDIGGE--GSALIAAGGSD-----PILRIWDPRKPG-TSAPVFQFSSHN  272 (347)
Q Consensus       215 ~~~~~~~~~~--------------~~~~~~~~~~~~~--~~~~la~~~~d-----~~i~iwd~~~~~-~~~~~~~~~~h~  272 (347)
                      .....+..+.              +..+..|+.+.+.  ...+||.|+.+     +.+.||.-.... +...+..+.+|+
T Consensus       144 ~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~  223 (361)
T KOG2445|consen  144 PDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHT  223 (361)
T ss_pred             CCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCC
Confidence            7654443322              1224567777632  23467877654     488999755433 334566788999


Q ss_pred             CCeeEEEeCCCCC---eEEEEEeCCCcEEEEEcCCC--------------------ccceeecCCCCeEEEEeec-CCCE
Q 036314          273 SWISACKWHNKSW---FHLISASYDGKVMLWDLRTA--------------------WPLSVIDSHKDKVLCADWW-RGDS  328 (347)
Q Consensus       273 ~~v~~v~~s~~~~---~~l~s~s~D~~i~lwd~~~~--------------------~~~~~~~~h~~~v~~~~~~-~~~~  328 (347)
                      +.|.+++|.|.-+   ++||+++.|| |+||.++..                    +.+..+.+|.++|+.+.|. .|..
T Consensus       224 dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGti  302 (361)
T KOG2445|consen  224 DPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTI  302 (361)
T ss_pred             CcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeE
Confidence            9999999999743   5799999999 999998731                    1133467899999999997 6889


Q ss_pred             EEEccCCceEEEeecc
Q 036314          329 VISGGVDSKLCVSSGV  344 (347)
Q Consensus       329 l~s~s~D~~v~vw~~~  344 (347)
                      |+|.|.||+||+|.-+
T Consensus       303 LsStGdDG~VRLWkan  318 (361)
T KOG2445|consen  303 LSSTGDDGCVRLWKAN  318 (361)
T ss_pred             EeecCCCceeeehhhh
Confidence            9999999999999743

>PTZ00421 coronin; Provisional

Probab=99.96  E-value=2.8e-26  Score=211.56  Aligned_cols=239  Identities=23%  Similarity=0.335  Sum_probs=172.3

Q ss_pred             EEEccCCCcEEEEeccccccccC-cc--c-cceeeeeeccccceEEEEEeC-CCCEEEEeeCCCcEEEEecCCCCCCCcc
Q 036314           83 VATASKDQTLRLWKFDAEELVNH-PK--K-IRSFKILRGHKASVHSIAAET-SGNMVCSGSWDCTISLWRTNDSDAAGNQ  157 (347)
Q Consensus        83 l~s~s~Dg~v~~wd~~~~~~~~~-~~--~-~~~~~~~~~h~~~V~~v~~s~-~~~~l~sgs~Dg~I~iwd~~~~~~~~~~  157 (347)
                      +++++.+.....|+...+..+.. .+  . ......+.+|.++|.+++|+| ++++|++|+.|++|++||+.+...... 
T Consensus        35 ~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~-  113 (493)
T PTZ00421         35 TIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQN-  113 (493)
T ss_pred             cEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccc-
Confidence            56677777777777554432110 00  0 011234789999999999999 789999999999999999875321100 


Q ss_pred             ceeeeccCCCccccccccccccccccCCccceEEEEeC-C-CCeEEEEecCCcEEEEECCCCceeeeeee-CeeeEEEEe
Q 036314          158 VSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWP-Q-QETIYSASWDHSVRTWDVEMGKDLSDIFC-GKALNCIDI  234 (347)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~-~~~l~s~s~dg~v~vwd~~~~~~~~~~~~-~~~~~~~~~  234 (347)
                                       ....+..+.+|...|.++.|+ . +..|++++.|++|+|||+++++.+..+.. ...+.+++|
T Consensus       114 -----------------~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~  176 (493)
T PTZ00421        114 -----------------ISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEW  176 (493)
T ss_pred             -----------------cCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEE
Confidence                             012355778999999999995 3 35899999999999999999887766653 456899999


Q ss_pred             eCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCC-eeEEEeCCCCCeEEEEEe----CCCcEEEEEcCCCc-cc
Q 036314          235 GGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSW-ISACKWHNKSWFHLISAS----YDGKVMLWDLRTAW-PL  308 (347)
Q Consensus       235 ~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~-v~~v~~s~~~~~~l~s~s----~D~~i~lwd~~~~~-~~  308 (347)
                      +++ +.+|++++.|++|++||++..   ..+..+.+|.+. +..+.|.+++.. |++++    .|+.|++||+++.. ++
T Consensus       177 spd-G~lLatgs~Dg~IrIwD~rsg---~~v~tl~~H~~~~~~~~~w~~~~~~-ivt~G~s~s~Dr~VklWDlr~~~~p~  251 (493)
T PTZ00421        177 NLD-GSLLCTTSKDKKLNIIDPRDG---TIVSSVEAHASAKSQRCLWAKRKDL-IITLGCSKSQQRQIMLWDTRKMASPY  251 (493)
T ss_pred             ECC-CCEEEEecCCCEEEEEECCCC---cEEEEEecCCCCcceEEEEcCCCCe-EEEEecCCCCCCeEEEEeCCCCCCce
Confidence            765 568899999999999999853   236677888765 456889988765 55443    47999999998754 34


Q ss_pred             eeecCCC-CeEEEEeec-CCCEEEEcc-CCceEEEeecc
Q 036314          309 SVIDSHK-DKVLCADWW-RGDSVISGG-VDSKLCVSSGV  344 (347)
Q Consensus       309 ~~~~~h~-~~v~~~~~~-~~~~l~s~s-~D~~v~vw~~~  344 (347)
                      .....+. ..+....|+ +++.|++++ .|++|++|+..
T Consensus       252 ~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~  290 (493)
T PTZ00421        252 STVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELM  290 (493)
T ss_pred             eEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEee
Confidence            4444333 344555565 466787777 59999999865

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.96  E-value=7.5e-27  Score=199.22  Aligned_cols=277  Identities=18%  Similarity=0.237  Sum_probs=213.3

Q ss_pred             CceeeccCCC-CCEEEEEecCCeEEEEcCC-CeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEecccccc
Q 036314           25 DWVSAVDGSN-PGFILTGCYDNLGRVWKAG-GVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEEL  102 (347)
Q Consensus        25 ~~v~~~~~~~-~~~l~sg~~d~~i~iw~~~-~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~  102 (347)
                      ..|++++..+ ...++|||.|.++-++|.. +..+.+|.||+..|..+.++++.    ..++++|.|..|++|...... 
T Consensus       220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~----~~v~~aSad~~i~vws~~~~s-  294 (506)
T KOG0289|consen  220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDL----DTVITASADEIIRVWSVPLSS-  294 (506)
T ss_pred             CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccch----hheeecCCcceEEeecccccc-
Confidence            5577777654 3689999999999999964 66788999999999999999854    368999999999999986542 


Q ss_pred             ccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccc
Q 036314          103 VNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTL  182 (347)
Q Consensus       103 ~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (347)
                              +....+.|..+|+.+..+|+|.+|++++.|+++...|++++..                         +...
T Consensus       295 --------~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~-------------------------lt~v  341 (506)
T KOG0289|consen  295 --------EPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQ-------------------------LTVV  341 (506)
T ss_pred             --------CccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcE-------------------------EEEE
Confidence                    2335678999999999999999999999999999999886532                         1110


Q ss_pred             c--CCccceEEEEe-CCCCeEEEEecCCcEEEEECCCCceeeeeeeC-eeeEEEEeeCCCCcEEEEecCCCcEEEEeCCC
Q 036314          183 V--GHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFCG-KALNCIDIGGEGSALIAAGGSDPILRIWDPRK  258 (347)
Q Consensus       183 ~--~h~~~v~~~~~-~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~  258 (347)
                      .  +..-.+.+.+| |+|..+.+|..|+.+++||+..+..+..+..+ .++..+.|+. ++..+|++.+|+.|++||+|+
T Consensus       342 s~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsE-NGY~Lat~add~~V~lwDLRK  420 (506)
T KOG0289|consen  342 SDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSE-NGYWLATAADDGSVKLWDLRK  420 (506)
T ss_pred             eeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEecc-CceEEEEEecCCeEEEEEehh
Confidence            0  01123566666 68888999999999999999988776666543 4789999964 567899999999999999997


Q ss_pred             CCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcC--CCccceeecCCCCeEEEEeec-CCCEEEEccCC
Q 036314          259 PGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLR--TAWPLSVIDSHKDKVLCADWW-RGDSVISGGVD  335 (347)
Q Consensus       259 ~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~--~~~~~~~~~~h~~~v~~~~~~-~~~~l~s~s~D  335 (347)
                      .... +.+.+. ....+.++.|.+.|.+ |+.++.|=+|.+++-.  ....+..+..|.+...++.|. ..++++++|+|
T Consensus       421 l~n~-kt~~l~-~~~~v~s~~fD~SGt~-L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd  497 (506)
T KOG0289|consen  421 LKNF-KTIQLD-EKKEVNSLSFDQSGTY-LGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMD  497 (506)
T ss_pred             hccc-ceeecc-ccccceeEEEcCCCCe-EEeecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccch
Confidence            5421 223332 2336899999988865 7777666555555422  345567777888899999996 56789999999


Q ss_pred             ceEEEeec
Q 036314          336 SKLCVSSG  343 (347)
Q Consensus       336 ~~v~vw~~  343 (347)
                      ..++|++.
T Consensus       498 ~~l~~~a~  505 (506)
T KOG0289|consen  498 AILRLYAL  505 (506)
T ss_pred             hheEEeec
Confidence            99998863

>PTZ00420 coronin; Provisional

Probab=99.96  E-value=2.3e-26  Score=213.33  Aligned_cols=228  Identities=20%  Similarity=0.268  Sum_probs=169.2

Q ss_pred             EccCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCC-CCEEEEeeCCCcEEEEecCCCCCCCccceeeec
Q 036314           85 TASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETS-GNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKR  163 (347)
Q Consensus        85 s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~-~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~  163 (347)
                      .|+.++.|++|++...         .++..+.+|.++|.+++|+|+ +.+|+||+.|++|+|||+.+.......      
T Consensus        49 gGG~~gvI~L~~~~r~---------~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~------  113 (568)
T PTZ00420         49 GGGLIGAIRLENQMRK---------PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKE------  113 (568)
T ss_pred             CCCceeEEEeeecCCC---------ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccc------
Confidence            4778899999997532         245678899999999999997 789999999999999998753210000      


Q ss_pred             cCCCccccccccccccccccCCccceEEEEeC-CCCe-EEEEecCCcEEEEECCCCceeeeeeeCeeeEEEEeeCCCCcE
Q 036314          164 KGNNQVEEPQLEGEAISTLVGHTQCVSSVVWP-QQET-IYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEGSAL  241 (347)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~-l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (347)
                                 ....+..+.+|...|.++.|+ .+.. |++++.|++|++||+++++.+..+.....+.+++|+++ +.+
T Consensus       114 -----------i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~Slswspd-G~l  181 (568)
T PTZ00420        114 -----------IKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIK-GNL  181 (568)
T ss_pred             -----------cccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCC-CCE
Confidence                       011234577899999999995 4554 57999999999999999887766665667899999765 567


Q ss_pred             EEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeE-----EEeCCCCCeEEEEEeCCC----cEEEEEcCC-Cccceee
Q 036314          242 IAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISA-----CKWHNKSWFHLISASYDG----KVMLWDLRT-AWPLSVI  311 (347)
Q Consensus       242 la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~-----v~~s~~~~~~l~s~s~D~----~i~lwd~~~-~~~~~~~  311 (347)
                      |++++.|+.|+|||++..   ..+.++.+|.+.+.+     ..|++++. +|+|++.|+    +|+|||++. ..++..+
T Consensus       182 Lat~s~D~~IrIwD~Rsg---~~i~tl~gH~g~~~s~~v~~~~fs~d~~-~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~  257 (568)
T PTZ00420        182 LSGTCVGKHMHIIDPRKQ---EIASSFHIHDGGKNTKNIWIDGLGGDDN-YILSTGFSKNNMREMKLWDLKNTTSALVTM  257 (568)
T ss_pred             EEEEecCCEEEEEECCCC---cEEEEEecccCCceeEEEEeeeEcCCCC-EEEEEEcCCCCccEEEEEECCCCCCceEEE
Confidence            888889999999999863   335678889876433     23457775 477777664    799999995 4556554


Q ss_pred             c--CCCCeEEEEeecC-CCEEEEccCCceEEEeec
Q 036314          312 D--SHKDKVLCADWWR-GDSVISGGVDSKLCVSSG  343 (347)
Q Consensus       312 ~--~h~~~v~~~~~~~-~~~l~s~s~D~~v~vw~~  343 (347)
                      .  .+.+.+...-..+ |.++++|+.|++|++|..
T Consensus       258 ~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~  292 (568)
T PTZ00420        258 SIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQH  292 (568)
T ss_pred             EecCCccceEEeeeCCCCCEEEEEECCCeEEEEEc
Confidence            3  3333333222233 678999999999999985

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.96  E-value=5.5e-27  Score=210.43  Aligned_cols=240  Identities=23%  Similarity=0.405  Sum_probs=193.4

Q ss_pred             EEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeeeeccccceEE-EEEeC-CCCE
Q 036314           56 CTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHS-IAAET-SGNM  133 (347)
Q Consensus        56 ~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~-v~~s~-~~~~  133 (347)
                      ..+.+.||...|..+.+.+.     ..++++|.||++|+|+-..++.+       ....+.+|.+.|.. ++|.+ ++-.
T Consensus         6 ls~~l~gH~~DVr~v~~~~~-----~~i~s~sRd~t~~vw~~~~~~~l-------~~~~~~~~~g~i~~~i~y~e~~~~~   73 (745)
T KOG0301|consen    6 LSHELEGHKSDVRAVAVTDG-----VCIISGSRDGTVKVWAKKGKQYL-------ETHAFEGPKGFIANSICYAESDKGR   73 (745)
T ss_pred             eEEEeccCccchheeEecCC-----eEEeecCCCCceeeeeccCcccc-------cceecccCcceeeccceeccccCcc
Confidence            45789999999988876542     36899999999999997655432       23456778888876 77764 4456


Q ss_pred             EEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEeCCCCeEEEEecCCcEEEEE
Q 036314          134 VCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWPQQETIYSASWDHSVRTWD  213 (347)
Q Consensus       134 l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~dg~v~vwd  213 (347)
                      +++|+.|.+|.+|.....                         .++.++.+|...|+++.......++|||+|.++++|-
T Consensus        74 l~~g~~D~~i~v~~~~~~-------------------------~P~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~  128 (745)
T KOG0301|consen   74 LVVGGMDTTIIVFKLSQA-------------------------EPLYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWR  128 (745)
T ss_pred             eEeecccceEEEEecCCC-------------------------CchhhhhccccceeeeecCCcCceEecccccceEEec
Confidence            899999999999987642                         4577899999999999865555699999999999996


Q ss_pred             CCCCceeeeeeeC-eeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEe
Q 036314          214 VEMGKDLSDIFCG-KALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISAS  292 (347)
Q Consensus       214 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s  292 (347)
                      ..  ++...+..+ ..+..+..-+.+  .+++|+.|.+|++|.-.     ..+.+|++|++.|+.+++-|++  .++||+
T Consensus       129 ~~--~l~~~l~gH~asVWAv~~l~e~--~~vTgsaDKtIklWk~~-----~~l~tf~gHtD~VRgL~vl~~~--~flScs  197 (745)
T KOG0301|consen  129 IG--ELVYSLQGHTASVWAVASLPEN--TYVTGSADKTIKLWKGG-----TLLKTFSGHTDCVRGLAVLDDS--HFLSCS  197 (745)
T ss_pred             ch--hhhcccCCcchheeeeeecCCC--cEEeccCcceeeeccCC-----chhhhhccchhheeeeEEecCC--CeEeec
Confidence            53  344445433 457777665554  77899999999999642     2467899999999999999886  389999


Q ss_pred             CCCcEEEEEcCCCccceeecCCCCeEEEEee-cCCCEEEEccCCceEEEeecc
Q 036314          293 YDGKVMLWDLRTAWPLSVIDSHKDKVLCADW-WRGDSVISGGVDSKLCVSSGV  344 (347)
Q Consensus       293 ~D~~i~lwd~~~~~~~~~~~~h~~~v~~~~~-~~~~~l~s~s~D~~v~vw~~~  344 (347)
                      .||.|++|++ +++.+.++.+|++.|+++.. .+++.++|+|.|++++||..-
T Consensus       198 NDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~  249 (745)
T KOG0301|consen  198 NDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD  249 (745)
T ss_pred             CCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC
Confidence            9999999999 67889999999999999995 467789999999999999864

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=9.4e-27  Score=208.14  Aligned_cols=240  Identities=19%  Similarity=0.331  Sum_probs=201.8

Q ss_pred             cCCceeeccCC-CCCEEEEEecCCeEEEEcCC-CeEEEEeec-cCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccc
Q 036314           23 HDDWVSAVDGS-NPGFILTGCYDNLGRVWKAG-GVCTHILEG-HCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDA   99 (347)
Q Consensus        23 h~~~v~~~~~~-~~~~l~sg~~d~~i~iw~~~-~~~~~~l~~-h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~   99 (347)
                      +++.|+++.++ +|++||.|-.+|+++|||.. .+.+..+.+ |...|.+++|..      ..+.+|+.|+.|..+|+..
T Consensus       216 ~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~~------~~lssGsr~~~I~~~dvR~  289 (484)
T KOG0305|consen  216 GEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWNS------SVLSSGSRDGKILNHDVRI  289 (484)
T ss_pred             CCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEeccC------ceEEEecCCCcEEEEEEec
Confidence            37999999988 67899999999999999974 455667787 999999999963      3689999999999999976


Q ss_pred             cccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCcccccccccccc
Q 036314          100 EELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAI  179 (347)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (347)
                      .+..        ..++.+|...|-.+.|++|+.++|||+.|+.+.|||....                         ...
T Consensus       290 ~~~~--------~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~-------------------------~p~  336 (484)
T KOG0305|consen  290 SQHV--------VSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSP-------------------------EPK  336 (484)
T ss_pred             chhh--------hhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCc-------------------------ccc
Confidence            5432        1247789999999999999999999999999999998432                         234


Q ss_pred             ccccCCccceEEEEeC--CCCeEEEE--ecCCcEEEEECCCCceeeeeeeCeeeEEEEeeCCCCcEEEEe-cCCCcEEEE
Q 036314          180 STLVGHTQCVSSVVWP--QQETIYSA--SWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEGSALIAAG-GSDPILRIW  254 (347)
Q Consensus       180 ~~~~~h~~~v~~~~~~--~~~~l~s~--s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~-~~d~~i~iw  254 (347)
                      ..+..|+.+|.+++|.  ....||+|  +.|+.|++||+.++..+..+..+..+..+.|++....++.+. ..++.|.||
T Consensus       337 ~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw  416 (484)
T KOG0305|consen  337 FTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLW  416 (484)
T ss_pred             EEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEE
Confidence            5678899999999994  45677775  678999999999999999888888999999987766666554 457899999


Q ss_pred             eCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCC
Q 036314          255 DPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTA  305 (347)
Q Consensus       255 d~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~  305 (347)
                      +...   ...+..+.+|...|..++++||+. .+++|+.|.++++|++=..
T Consensus       417 ~~ps---~~~~~~l~gH~~RVl~la~SPdg~-~i~t~a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  417 KYPS---MKLVAELLGHTSRVLYLALSPDGE-TIVTGAADETLRFWNLFDE  463 (484)
T ss_pred             eccc---cceeeeecCCcceeEEEEECCCCC-EEEEecccCcEEeccccCC
Confidence            9764   345778899999999999999986 5999999999999998653

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=2.5e-27  Score=211.20  Aligned_cols=231  Identities=23%  Similarity=0.405  Sum_probs=185.9

Q ss_pred             EEEEEccCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCcccee
Q 036314           81 VTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSI  160 (347)
Q Consensus        81 ~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~  160 (347)
                      ++|+||+.||.|++|++....-   .........+..|.+.|+.++...+++.|+|+|.|-+|++|+.....        
T Consensus        38 ryLfTgGRDg~i~~W~~~~d~~---~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~--------  106 (735)
T KOG0308|consen   38 RYLFTGGRDGIIRLWSVTQDSN---EPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDN--------  106 (735)
T ss_pred             ceEEecCCCceEEEeccccccC---CcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCc--------
Confidence            4799999999999999863211   01112356778899999999999999999999999999999976531        


Q ss_pred             eeccCCCccccccccccccccccCCccceEEEEe--CCCCeEEEEecCCcEEEEECCCCce--eeee--------e--eC
Q 036314          161 KKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW--PQQETIYSASWDHSVRTWDVEMGKD--LSDI--------F--CG  226 (347)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~--~~~~~l~s~s~dg~v~vwd~~~~~~--~~~~--------~--~~  226 (347)
                                     .-+..++..|.++|.++++  ++...++||+.|+.|.+||++++..  +...        .  +.
T Consensus       107 ---------------~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k  171 (735)
T KOG0308|consen  107 ---------------TFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPK  171 (735)
T ss_pred             ---------------chhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCc
Confidence                           1356678889999999998  3566799999999999999997732  2211        1  12


Q ss_pred             eeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCc
Q 036314          227 KALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAW  306 (347)
Q Consensus       227 ~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~  306 (347)
                      ..++.++..+. +..|++|+..+.+++||++..   ..+..+.||++-|..+..++||. .++|+|.||+|+|||++...
T Consensus       172 ~siYSLA~N~t-~t~ivsGgtek~lr~wDprt~---~kimkLrGHTdNVr~ll~~dDGt-~~ls~sSDgtIrlWdLgqQr  246 (735)
T KOG0308|consen  172 DSIYSLAMNQT-GTIIVSGGTEKDLRLWDPRTC---KKIMKLRGHTDNVRVLLVNDDGT-RLLSASSDGTIRLWDLGQQR  246 (735)
T ss_pred             cceeeeecCCc-ceEEEecCcccceEEeccccc---cceeeeeccccceEEEEEcCCCC-eEeecCCCceEEeeeccccc
Confidence            35677777544 468899999999999999853   34677789999999999999985 59999999999999999989


Q ss_pred             cceeecCCCCeEEEEeecCC-CEEEEccCCceEEEee
Q 036314          307 PLSVIDSHKDKVLCADWWRG-DSVISGGVDSKLCVSS  342 (347)
Q Consensus       307 ~~~~~~~h~~~v~~~~~~~~-~~l~s~s~D~~v~vw~  342 (347)
                      +++++..|++.||++.-++. +.+-+|+.||.|..-+
T Consensus       247 Cl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Td  283 (735)
T KOG0308|consen  247 CLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTD  283 (735)
T ss_pred             eeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecc
Confidence            99999999999999888764 4689999999987543

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=2e-26  Score=199.35  Aligned_cols=237  Identities=20%  Similarity=0.290  Sum_probs=190.0

Q ss_pred             CCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcE
Q 036314           64 CGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTI  143 (347)
Q Consensus        64 ~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I  143 (347)
                      ...|.++.|+|....+  ..+|+|.  .+.+|+..+..         ..+++...++.|.++.|-.||++++.|...|.|
T Consensus        26 ~~~vssl~fsp~~P~d--~aVt~S~--rvqly~~~~~~---------~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V   92 (487)
T KOG0310|consen   26 HNSVSSLCFSPKHPYD--FAVTSSV--RVQLYSSVTRS---------VRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHV   92 (487)
T ss_pred             cCcceeEecCCCCCCc--eEEeccc--EEEEEecchhh---------hhhhHHhhccceeEEEeecCCeEEEccCCcCcE
Confidence            3669999999976653  3455554  69999875432         333455678889999999999999999999999


Q ss_pred             EEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEeC--CCCeEEEEecCCcEEEEECCCCceee
Q 036314          144 SLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWP--QQETIYSASWDHSVRTWDVEMGKDLS  221 (347)
Q Consensus       144 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~l~s~s~dg~v~vwd~~~~~~~~  221 (347)
                      +|||+.+                         ...++.+.+|+.++..+.|+  ++..+++|+.|+.+++||+.+.....
T Consensus        93 ~vfD~k~-------------------------r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~  147 (487)
T KOG0310|consen   93 KVFDMKS-------------------------RVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQA  147 (487)
T ss_pred             EEecccc-------------------------HHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEE
Confidence            9999542                         24578899999999999885  44568899999999999998877543


Q ss_pred             eeee-CeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEE
Q 036314          222 DIFC-GKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLW  300 (347)
Q Consensus       222 ~~~~-~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lw  300 (347)
                      .+.. ...+.|.++.|....++++|++||+|++||++...  ..+..+ .|..+|.++.+-|.|. ++|+|+. ..||||
T Consensus       148 ~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~--~~v~el-nhg~pVe~vl~lpsgs-~iasAgG-n~vkVW  222 (487)
T KOG0310|consen  148 ELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLT--SRVVEL-NHGCPVESVLALPSGS-LIASAGG-NSVKVW  222 (487)
T ss_pred             EecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCC--ceeEEe-cCCCceeeEEEcCCCC-EEEEcCC-CeEEEE
Confidence            4443 34789999999888899999999999999998643  335565 5899999999999875 4777664 579999


Q ss_pred             EcCCC-ccceeecCCCCeEEEEeec-CCCEEEEccCCceEEEeec
Q 036314          301 DLRTA-WPLSVIDSHKDKVLCADWW-RGDSVISGGVDSKLCVSSG  343 (347)
Q Consensus       301 d~~~~-~~~~~~~~h~~~v~~~~~~-~~~~l~s~s~D~~v~vw~~  343 (347)
                      |+.+| +.+..+..|...|+|+.+. ++.+|.|||.|+.|+|++.
T Consensus       223 Dl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~  267 (487)
T KOG0310|consen  223 DLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDT  267 (487)
T ss_pred             EecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEc
Confidence            99865 4455555699999999995 6889999999999999994

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=6.3e-26  Score=194.92  Aligned_cols=274  Identities=22%  Similarity=0.325  Sum_probs=207.0

Q ss_pred             CCCcCCceeeccCCC-CCEEEEEecCCeEEEEcCC-CeEE-----E-----------Ee--eccCCceEEEEEeecCCCc
Q 036314           20 PSLHDDWVSAVDGSN-PGFILTGCYDNLGRVWKAG-GVCT-----H-----------IL--EGHCGAVSSVNIIKSDGLK   79 (347)
Q Consensus        20 ~~~h~~~v~~~~~~~-~~~l~sg~~d~~i~iw~~~-~~~~-----~-----------~l--~~h~~~V~~v~~~~~~~~~   79 (347)
                      ...|.-.|+++++++ +.+..+++.|++|.=|+.. |+..     .           ..  .+|-..+.++++++    +
T Consensus       138 ~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~----D  213 (479)
T KOG0299|consen  138 IGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSS----D  213 (479)
T ss_pred             eccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcC----C
Confidence            457999999999984 5699999999999999852 3211     0           01  27888999999998    4


Q ss_pred             eEEEEEccCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccce
Q 036314           80 YVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVS  159 (347)
Q Consensus        80 ~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~  159 (347)
                      +.+||+|+.|..|.||+..+.+         .++.+.+|.++|.+++|-..-..++++|.|.+|++|+++..        
T Consensus       214 gkylatgg~d~~v~Iw~~~t~e---------hv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~--------  276 (479)
T KOG0299|consen  214 GKYLATGGRDRHVQIWDCDTLE---------HVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQL--------  276 (479)
T ss_pred             CcEEEecCCCceEEEecCcccc---------hhhcccccccceeeeeeecCccceeeeecCCceEEEehhHh--------
Confidence            4689999999999999988764         34568899999999999877789999999999999998742        


Q ss_pred             eeeccCCCccccccccccccccccCCccceEEEEeCCCCeEEEEe-cCCcEEEEECCCCceeeeeeeCeeeEEEEeeCCC
Q 036314          160 IKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWPQQETIYSAS-WDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEG  238 (347)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s-~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  238 (347)
                                       ..+.++-||.+.|.++.-..-+.++|++ .|+++++|++.....+.-......+.|++|-.  
T Consensus       277 -----------------s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In--  337 (479)
T KOG0299|consen  277 -----------------SYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFIN--  337 (479)
T ss_pred             -----------------HHHHHHhCCccceeeechhcccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEec--
Confidence                             3466788999999998755555666655 99999999995543332222233578888843  


Q ss_pred             CcEEEEecCCCcEEEEeCCCCCCCCCeEEec------------CCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCC-
Q 036314          239 SALIAAGGSDPILRIWDPRKPGTSAPVFQFS------------SHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTA-  305 (347)
Q Consensus       239 ~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~------------~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~-  305 (347)
                      ..++++|+.+|.|.+|++.+.   +|+++..            .+..||++++..|... ++|+||.+|.||||-+..+ 
T Consensus       338 ~~HfvsGSdnG~IaLWs~~KK---kplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sd-L~asGS~~G~vrLW~i~~g~  413 (479)
T KOG0299|consen  338 DEHFVSGSDNGSIALWSLLKK---KPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSD-LLASGSWSGCVRLWKIEDGL  413 (479)
T ss_pred             ccceeeccCCceEEEeeeccc---CceeEeeccccccCCccccccccceeeeEecccCc-eEEecCCCCceEEEEecCCc
Confidence            347899999999999998653   2333221            1224999999998764 7999999999999999887 


Q ss_pred             ---ccceeecCCCCeEEEEeec-CCCE-EEEccCCceE
Q 036314          306 ---WPLSVIDSHKDKVLCADWW-RGDS-VISGGVDSKL  338 (347)
Q Consensus       306 ---~~~~~~~~h~~~v~~~~~~-~~~~-l~s~s~D~~v  338 (347)
                         .++..+. -.+-|.++.|+ .|.+ +|..+....+
T Consensus       414 r~i~~l~~ls-~~GfVNsl~f~~sgk~ivagiGkEhRl  450 (479)
T KOG0299|consen  414 RAINLLYSLS-LVGFVNSLAFSNSGKRIVAGIGKEHRL  450 (479)
T ss_pred             cccceeeecc-cccEEEEEEEccCCCEEEEeccccccc
Confidence               2333443 46789999997 4664 5555555444

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.95  E-value=1.6e-26  Score=208.00  Aligned_cols=280  Identities=17%  Similarity=0.222  Sum_probs=210.9

Q ss_pred             CcCCceeeccC-C-----------CCCEEEEEecCCeEEEEcCCC----eEEE--Ee-----------------------
Q 036314           22 LHDDWVSAVDG-S-----------NPGFILTGCYDNLGRVWKAGG----VCTH--IL-----------------------   60 (347)
Q Consensus        22 ~h~~~v~~~~~-~-----------~~~~l~sg~~d~~i~iw~~~~----~~~~--~l-----------------------   60 (347)
                      -|...|+.+.. .           +.+-++|+|.|+|||+|++.+    ...+  +|                       
T Consensus       367 yHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~  446 (1080)
T KOG1408|consen  367 YHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAG  446 (1080)
T ss_pred             eccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCC
Confidence            47777776652 1           235699999999999998753    1110  00                       


Q ss_pred             ---------eccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCC-
Q 036314           61 ---------EGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETS-  130 (347)
Q Consensus        61 ---------~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~-  130 (347)
                               .+....|.+++++|+    +++||+|..-|++|+|++...+         ....+.+|+..|.|+.|+.. 
T Consensus       447 ~fdka~~s~~d~r~G~R~~~vSp~----gqhLAsGDr~GnlrVy~Lq~l~---------~~~~~eAHesEilcLeyS~p~  513 (1080)
T KOG1408|consen  447 IFDKALVSTCDSRFGFRALAVSPD----GQHLASGDRGGNLRVYDLQELE---------YTCFMEAHESEILCLEYSFPV  513 (1080)
T ss_pred             cccccchhhcCcccceEEEEECCC----cceecccCccCceEEEEehhhh---------hhhheecccceeEEEeecCch
Confidence                     011124789999984    4589999999999999997643         33456799999999998643 


Q ss_pred             --CCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEeC-CC--CeEEEEec
Q 036314          131 --GNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWP-QQ--ETIYSASW  205 (347)
Q Consensus       131 --~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~--~~l~s~s~  205 (347)
                        .++|+++|.|.-|.|||+...                        -..++++.+|...|.++.|. .+  ..+++++.
T Consensus       514 ~~~kLLASasrdRlIHV~Dv~rn------------------------y~l~qtld~HSssITsvKFa~~gln~~MiscGA  569 (1080)
T KOG1408|consen  514 LTNKLLASASRDRLIHVYDVKRN------------------------YDLVQTLDGHSSSITSVKFACNGLNRKMISCGA  569 (1080)
T ss_pred             hhhHhhhhccCCceEEEEecccc------------------------cchhhhhcccccceeEEEEeecCCceEEEeccC
Confidence              479999999999999998642                        23467899999999999884 22  46889999


Q ss_pred             CCcEEEEECCC----Cceee---eeeeCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEec---CCCCCe
Q 036314          206 DHSVRTWDVEM----GKDLS---DIFCGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFS---SHNSWI  275 (347)
Q Consensus       206 dg~v~vwd~~~----~~~~~---~~~~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~---~h~~~v  275 (347)
                      |+.| +++...    +....   .......++.+++.|. ..+++++++|.+|+|||+...+.   .+.|.   +|.+..
T Consensus       570 Dksi-mFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~-~k~v~t~cQDrnirif~i~sgKq---~k~FKgs~~~eG~l  644 (1080)
T KOG1408|consen  570 DKSI-MFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPT-SKLVVTVCQDRNIRIFDIESGKQ---VKSFKGSRDHEGDL  644 (1080)
T ss_pred             chhh-heehhccccCceeccccccccccceEEEeeeCCC-cceEEEEecccceEEEeccccce---eeeecccccCCCce
Confidence            9876 444433    11110   0011234677777654 55889999999999999987543   33443   455566


Q ss_pred             eEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecCCCCeEEEEeecCCCE-EEEccCCceEEEeecc
Q 036314          276 SACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKVLCADWWRGDS-VISGGVDSKLCVSSGV  344 (347)
Q Consensus       276 ~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~D~~v~vw~~~  344 (347)
                      -.+...|.+. +||+.+.|+++-++|.-+|+++.++.||.+.|+++.|.++.+ |++++.||.|.||..+
T Consensus       645 IKv~lDPSgi-Y~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp  713 (1080)
T KOG1408|consen  645 IKVILDPSGI-YLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLP  713 (1080)
T ss_pred             EEEEECCCcc-EEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEECc
Confidence            7788999986 599999999999999999999999999999999999988764 9999999999999987

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.95  E-value=5.2e-26  Score=202.43  Aligned_cols=305  Identities=18%  Similarity=0.239  Sum_probs=213.1

Q ss_pred             cCCceeecc--CC--C--CCEEEEEecCCeEEEEcCCCe-------EEEEeeccCCceEEEEEeecCCCceEEEEEccCC
Q 036314           23 HDDWVSAVD--GS--N--PGFILTGCYDNLGRVWKAGGV-------CTHILEGHCGAVSSVNIIKSDGLKYVTVATASKD   89 (347)
Q Consensus        23 h~~~v~~~~--~~--~--~~~l~sg~~d~~i~iw~~~~~-------~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~D   89 (347)
                      |..+++.++  |+  +  .++|+-+-.||.|.++|....       ....+..|-+.|..+.|.| +.   ..|++++.|
T Consensus        46 ~~~p~pPf~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wap-ge---~~lVsasGD  121 (720)
T KOG0321|consen   46 DGLPVPPFADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAP-GE---SLLVSASGD  121 (720)
T ss_pred             CCCCCCCccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCC-Cc---eeEEEccCC
Confidence            556676633  54  2  358999999999999986421       1345678999999999998 32   369999999


Q ss_pred             CcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCC-CEEEEeeCCCcEEEEecCCCCCCCccc---eeeeccC
Q 036314           90 QTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSG-NMVCSGSWDCTISLWRTNDSDAAGNQV---SIKKRKG  165 (347)
Q Consensus        90 g~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~-~~l~sgs~Dg~I~iwd~~~~~~~~~~~---~~~~~~~  165 (347)
                      .++|.||++.+++..       ...+.||...|.+++|.++. ..|++|++||.|.|||++.........   .+.....
T Consensus       122 sT~r~Wdvk~s~l~G-------~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n  194 (720)
T KOG0321|consen  122 STIRPWDVKTSRLVG-------GRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHN  194 (720)
T ss_pred             ceeeeeeeccceeec-------ceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhcccc
Confidence            999999999876532       22467999999999999976 588899999999999987432110000   0000000


Q ss_pred             CCccccccccccccccccCCccc----eEEEEeCCCCeEEEEec-CCcEEEEECCCCceeeeee--------e----Cee
Q 036314          166 NNQVEEPQLEGEAISTLVGHTQC----VSSVVWPQQETIYSASW-DHSVRTWDVEMGKDLSDIF--------C----GKA  228 (347)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~h~~~----v~~~~~~~~~~l~s~s~-dg~v~vwd~~~~~~~~~~~--------~----~~~  228 (347)
                      ..... .....+.+.....|...    |..+.|.|...|++++. |+.|+|||++.........        .    ...
T Consensus       195 ~~ptp-skp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G  273 (720)
T KOG0321|consen  195 TAPTP-SKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVG  273 (720)
T ss_pred             CCCCC-CchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceee
Confidence            00000 00001112223334333    55567778889999888 9999999998765433221        1    124


Q ss_pred             eEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCC---CeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCC
Q 036314          229 LNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNS---WISACKWHNKSWFHLISASYDGKVMLWDLRTA  305 (347)
Q Consensus       229 ~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~---~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~  305 (347)
                      +.++.....+..++|.+. |+.|++|+++... ..+.+.+.++..   +|. -..+|++. +|++|+.|....+|.+.+.
T Consensus       274 ~~nL~lDssGt~L~AsCt-D~sIy~ynm~s~s-~sP~~~~sg~~~~sf~vk-s~lSpd~~-~l~SgSsd~~ayiw~vs~~  349 (720)
T KOG0321|consen  274 QVNLILDSSGTYLFASCT-DNSIYFYNMRSLS-ISPVAEFSGKLNSSFYVK-SELSPDDC-SLLSGSSDEQAYIWVVSSP  349 (720)
T ss_pred             eEEEEecCCCCeEEEEec-CCcEEEEeccccC-cCchhhccCcccceeeee-eecCCCCc-eEeccCCCcceeeeeecCc
Confidence            566666666677788776 9999999998643 345666666643   232 33678886 5999999999999999886


Q ss_pred             c-cceeecCCCCeEEEEeecC--CCEEEEccCCceEEEeec
Q 036314          306 W-PLSVIDSHKDKVLCADWWR--GDSVISGGVDSKLCVSSG  343 (347)
Q Consensus       306 ~-~~~~~~~h~~~v~~~~~~~--~~~l~s~s~D~~v~vw~~  343 (347)
                      + +...+.||.-.|.+|.|.|  ..-+|+++.|-+++||+.
T Consensus       350 e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l  390 (720)
T KOG0321|consen  350 EAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRL  390 (720)
T ss_pred             cCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEec
Confidence            4 4567889999999999964  456899999999999986

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.95  E-value=2.9e-25  Score=178.18  Aligned_cols=282  Identities=16%  Similarity=0.196  Sum_probs=212.5

Q ss_pred             CCCCCcCCceeeccCC-CCCEEEEEecCCeEEEEcCCC-eEE--EEeeccCCceEEEEEeecCCCceEEEEEccCCCcEE
Q 036314           18 EEPSLHDDWVSAVDGS-NPGFILTGCYDNLGRVWKAGG-VCT--HILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLR   93 (347)
Q Consensus        18 ~~~~~h~~~v~~~~~~-~~~~l~sg~~d~~i~iw~~~~-~~~--~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~   93 (347)
                      ....+|...|.++++. +|..|++|+.|+++++|++.. ...  ....+|.+.|-.+.|+|..+   ..+++++.|.+||
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~---d~~atas~dk~ir   90 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHP---DLFATASGDKTIR   90 (313)
T ss_pred             HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCC---cceEEecCCceEE
Confidence            4566899999999976 788999999999999999753 222  24679999999999998654   3689999999999


Q ss_pred             EEeccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCcccccc
Q 036314           94 LWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQ  173 (347)
Q Consensus        94 ~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (347)
                      +||+..+++         ......-... .-+.|+|+|.+++.++.|..|...|.++.....                  
T Consensus        91 ~wd~r~~k~---------~~~i~~~~en-i~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~------------------  142 (313)
T KOG1407|consen   91 IWDIRSGKC---------TARIETKGEN-INITWSPDGEYIAVGNKDDRITFIDARTYKIVN------------------  142 (313)
T ss_pred             EEEeccCcE---------EEEeeccCcc-eEEEEcCCCCEEEEecCcccEEEEEecccceee------------------
Confidence            999987653         2222222223 346899999999999999999999987532110                  


Q ss_pred             ccccccccccCCccceEEEEeC-CCCeEEEEecCCcEEEEECCCCceeeeeeeC-eeeEEEEeeCCCCcEEEEecCCCcE
Q 036314          174 LEGEAISTLVGHTQCVSSVVWP-QQETIYSASWDHSVRTWDVEMGKDLSDIFCG-KALNCIDIGGEGSALIAAGGSDPIL  251 (347)
Q Consensus       174 ~~~~~~~~~~~h~~~v~~~~~~-~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~la~~~~d~~i  251 (347)
                             . ......+.-+.|. ++++++-....|.|.|.....-+++..+..+ ....|+.|+|. ++.+|+|+.|-.+
T Consensus       143 -------~-~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~-GryfA~GsADAlv  213 (313)
T KOG1407|consen  143 -------E-EQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPD-GRYFATGSADALV  213 (313)
T ss_pred             -------h-hcccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCC-CceEeecccccee
Confidence                   0 0011235556664 4556666666789999887776777776643 34567888665 5689999999999


Q ss_pred             EEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecCCCCeEEEEeecCCCE-EE
Q 036314          252 RIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKVLCADWWRGDS-VI  330 (347)
Q Consensus       252 ~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~  330 (347)
                      .+||+..   ......++.+.=+|+.+.||-+|. +||+||+|..|-|=++.+|..+..+. |.++-..|+|+|.+. ||
T Consensus       214 SLWD~~E---LiC~R~isRldwpVRTlSFS~dg~-~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHPk~~LLA  288 (313)
T KOG1407|consen  214 SLWDVDE---LICERCISRLDWPVRTLSFSHDGR-MLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHPKRPLLA  288 (313)
T ss_pred             eccChhH---hhhheeeccccCceEEEEeccCcc-eeeccCccceEEeEecccCCeEEEee-ccCCceeEEecCCCceee
Confidence            9999873   445677888888999999999985 69999999999999999998877765 678889999998764 55


Q ss_pred             EccCC---------ceEEEeecc
Q 036314          331 SGGVD---------SKLCVSSGV  344 (347)
Q Consensus       331 s~s~D---------~~v~vw~~~  344 (347)
                      =+..|         |+|+++..+
T Consensus       289 yA~ddk~~d~~reag~vKiFG~~  311 (313)
T KOG1407|consen  289 YACDDKDGDSNREAGTVKIFGLS  311 (313)
T ss_pred             EEecCCCCccccccceeEEecCC
Confidence            33332         577777544

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.95  E-value=1.1e-25  Score=180.54  Aligned_cols=244  Identities=19%  Similarity=0.221  Sum_probs=192.5

Q ss_pred             EEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCC-CEEEE
Q 036314           58 HILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSG-NMVCS  136 (347)
Q Consensus        58 ~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~-~~l~s  136 (347)
                      +.+.+|...|.+|+|..++    ..|++|+.|+++++|+++..++..       --..++|.+.|-.++++|.. .++++
T Consensus        14 r~~~~~~~~v~Sv~wn~~g----~~lasgs~dktv~v~n~e~~r~~~-------~~~~~gh~~svdql~w~~~~~d~~at   82 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDG----TKLASGSFDKTVSVWNLERDRFRK-------ELVYRGHTDSVDQLCWDPKHPDLFAT   82 (313)
T ss_pred             HHhhhhhhcceEEEEcccC----ceeeecccCCceEEEEecchhhhh-------hhcccCCCcchhhheeCCCCCcceEE
Confidence            4577899999999998844    469999999999999998654321       12457899999999998765 79999


Q ss_pred             eeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEeCCCCeEEEEecCCcEEEEECCC
Q 036314          137 GSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWPQQETIYSASWDHSVRTWDVEM  216 (347)
Q Consensus       137 gs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~dg~v~vwd~~~  216 (347)
                      ++.|.+|++||+....+                         ........+.+.-.-+|++++++.++.|..|...|.++
T Consensus        83 as~dk~ir~wd~r~~k~-------------------------~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~  137 (313)
T KOG1407|consen   83 ASGDKTIRIWDIRSGKC-------------------------TARIETKGENINITWSPDGEYIAVGNKDDRITFIDART  137 (313)
T ss_pred             ecCCceEEEEEeccCcE-------------------------EEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecc
Confidence            99999999999886432                         21222222233333348999999999999999999998


Q ss_pred             CceeeeeeeCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCc
Q 036314          217 GKDLSDIFCGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGK  296 (347)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~  296 (347)
                      .+.....+....+..+.+.-++ .++......|+|.|....   ..+++..+..|.....|+.|+|+|. +||+|+.|..
T Consensus       138 ~~~~~~~~~~~e~ne~~w~~~n-d~Fflt~GlG~v~ILsyp---sLkpv~si~AH~snCicI~f~p~Gr-yfA~GsADAl  212 (313)
T KOG1407|consen  138 YKIVNEEQFKFEVNEISWNNSN-DLFFLTNGLGCVEILSYP---SLKPVQSIKAHPSNCICIEFDPDGR-YFATGSADAL  212 (313)
T ss_pred             cceeehhcccceeeeeeecCCC-CEEEEecCCceEEEEecc---ccccccccccCCcceEEEEECCCCc-eEeeccccce
Confidence            7776665555566667776444 444444557999998754   2456889999999999999999996 5999999999


Q ss_pred             EEEEEcCCCccceeecCCCCeEEEEeec-CCCEEEEccCCceEEEee
Q 036314          297 VMLWDLRTAWPLSVIDSHKDKVLCADWW-RGDSVISGGVDSKLCVSS  342 (347)
Q Consensus       297 i~lwd~~~~~~~~~~~~h~~~v~~~~~~-~~~~l~s~s~D~~v~vw~  342 (347)
                      +-|||++.-.++..+..+.-+|+.+.|+ +|++||+||.|..|-|-.
T Consensus       213 vSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~  259 (313)
T KOG1407|consen  213 VSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAE  259 (313)
T ss_pred             eeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEe
Confidence            9999999888888899999999999997 899999999998886643

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=6.4e-26  Score=180.33  Aligned_cols=253  Identities=19%  Similarity=0.212  Sum_probs=186.7

Q ss_pred             CCCCcCCceeeccCC-CCCEEEEEecCCeEEEEcCC--C--eEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEE
Q 036314           19 EPSLHDDWVSAVDGS-NPGFILTGCYDNLGRVWKAG--G--VCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLR   93 (347)
Q Consensus        19 ~~~~h~~~v~~~~~~-~~~~l~sg~~d~~i~iw~~~--~--~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~   93 (347)
                      .-..|++-|-.+... -+..|||+|.|++|||+..+  +  +.+..|.||.++|..++|....  -+..||++|.||.|.
T Consensus         6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk--~G~iLAScsYDgkVI   83 (299)
T KOG1332|consen    6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPK--FGTILASCSYDGKVI   83 (299)
T ss_pred             hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccc--cCcEeeEeecCceEE
Confidence            345788888887765 57899999999999999853  3  5678899999999999996422  235899999999999


Q ss_pred             EEeccccccccCccccceeeeeeccccceEEEEEeCC--CCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCcccc
Q 036314           94 LWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETS--GNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEE  171 (347)
Q Consensus        94 ~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~--~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~  171 (347)
                      ||.-+.++       +........|+..|++++|.|.  |..|+.++.||.|.|.+.......                 
T Consensus        84 iWke~~g~-------w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w-----------------  139 (299)
T KOG1332|consen   84 IWKEENGR-------WTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGW-----------------  139 (299)
T ss_pred             EEecCCCc-------hhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCc-----------------
Confidence            99977653       2333456789999999998775  689999999999999987653100                 


Q ss_pred             ccccccccccccCCccceEEEEeC----CC-----------CeEEEEecCCcEEEEECCCCceee--eeeeC-eeeEEEE
Q 036314          172 PQLEGEAISTLVGHTQCVSSVVWP----QQ-----------ETIYSASWDHSVRTWDVEMGKDLS--DIFCG-KALNCID  233 (347)
Q Consensus       172 ~~~~~~~~~~~~~h~~~v~~~~~~----~~-----------~~l~s~s~dg~v~vwd~~~~~~~~--~~~~~-~~~~~~~  233 (347)
                           ...+....|+-.|+++.|.    ++           .+|+||+.|+.|+||+...++...  .+..+ .-+..++
T Consensus       140 -----~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVA  214 (299)
T KOG1332|consen  140 -----TTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVA  214 (299)
T ss_pred             -----cchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhh
Confidence                 0112334577777777772    12           469999999999999988764332  23322 2356667


Q ss_pred             eeCCC---CcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcC
Q 036314          234 IGGEG---SALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLR  303 (347)
Q Consensus       234 ~~~~~---~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~  303 (347)
                      +.|.-   ...+|++++|+++-||..+....+-....+....+.+..+.||+.|. .|+.++.|..|.+|.-+
T Consensus       215 waP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn-~LaVs~GdNkvtlwke~  286 (299)
T KOG1332|consen  215 WAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGN-ILAVSGGDNKVTLWKEN  286 (299)
T ss_pred             hccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEecccc-EEEEecCCcEEEEEEeC
Confidence            76542   34789999999999998763212112233445667899999999985 68889999999999654

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.95  E-value=3.2e-26  Score=198.68  Aligned_cols=280  Identities=19%  Similarity=0.292  Sum_probs=220.7

Q ss_pred             CCCcCCceeeccCCCC-CEEEEEecCCeEEEEcCCCe----EEEEeec--cCCceEEEEEeecCCCceEEEEEccCCCcE
Q 036314           20 PSLHDDWVSAVDGSNP-GFILTGCYDNLGRVWKAGGV----CTHILEG--HCGAVSSVNIIKSDGLKYVTVATASKDQTL   92 (347)
Q Consensus        20 ~~~h~~~v~~~~~~~~-~~l~sg~~d~~i~iw~~~~~----~~~~l~~--h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v   92 (347)
                      ...|..-|.++.+++. ..+.|||. |-|+|||+.+.    .+..|..  ...-+.++..++++    ..|++|++-.++
T Consensus       415 tL~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdg----rtLivGGeastl  489 (705)
T KOG0639|consen  415 TLAHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDG----RTLIVGGEASTL  489 (705)
T ss_pred             hhccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCC----ceEEecccccee
Confidence            3469999999998864 57888875 67999998532    2333332  23456777888844    468999999999


Q ss_pred             EEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccc
Q 036314           93 RLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEP  172 (347)
Q Consensus        93 ~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  172 (347)
                      .|||+...+.       +....+......+.+++.+||.++++++..||.|+|||+.+.                     
T Consensus       490 siWDLAapTp-------rikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq---------------------  541 (705)
T KOG0639|consen  490 SIWDLAAPTP-------RIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQ---------------------  541 (705)
T ss_pred             eeeeccCCCc-------chhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccc---------------------
Confidence            9999976542       122233334455778899999999999999999999999863                     


Q ss_pred             cccccccccccCCccceEEEEeC-CCCeEEEEecCCcEEEEECCCCceeeeeeeCeeeEEEEeeCCCCcEEEEecCCCcE
Q 036314          173 QLEGEAISTLVGHTQCVSSVVWP-QQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEGSALIAAGGSDPIL  251 (347)
Q Consensus       173 ~~~~~~~~~~~~h~~~v~~~~~~-~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~d~~i  251 (347)
                          ..++.+.||++.+.|+..+ +|..|-+|+.|++||.||+++++.+..-.+...+..+-.+|. +..+|.|.+++.+
T Consensus       542 ----~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~-~dWlavGMens~v  616 (705)
T KOG0639|consen  542 ----TLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPT-GDWLAVGMENSNV  616 (705)
T ss_pred             ----eeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCCC-ccceeeecccCcE
Confidence                3577899999999999874 778899999999999999999887765555566777777665 4588999999999


Q ss_pred             EEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecCCCCeEEEEeec-CCCEEE
Q 036314          252 RIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKVLCADWW-RGDSVI  330 (347)
Q Consensus       252 ~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h~~~v~~~~~~-~~~~l~  330 (347)
                      .+.....+.    .+.+.-|.+-|.++.|.+-|. .+++.+.|.-+..|..-.|..+..... ...|+|++.+ ++++++
T Consensus       617 evlh~skp~----kyqlhlheScVLSlKFa~cGk-wfvStGkDnlLnawrtPyGasiFqskE-~SsVlsCDIS~ddkyIV  690 (705)
T KOG0639|consen  617 EVLHTSKPE----KYQLHLHESCVLSLKFAYCGK-WFVSTGKDNLLNAWRTPYGASIFQSKE-SSSVLSCDISFDDKYIV  690 (705)
T ss_pred             EEEecCCcc----ceeecccccEEEEEEecccCc-eeeecCchhhhhhccCccccceeeccc-cCcceeeeeccCceEEE
Confidence            999876532    456778999999999999996 599999999999998887877766543 5789999997 677899


Q ss_pred             EccCCceEEEeec
Q 036314          331 SGGVDSKLCVSSG  343 (347)
Q Consensus       331 s~s~D~~v~vw~~  343 (347)
                      |||.|+.-.||..
T Consensus       691 TGSGdkkATVYeV  703 (705)
T KOG0639|consen  691 TGSGDKKATVYEV  703 (705)
T ss_pred             ecCCCcceEEEEE
Confidence            9999998888764

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.94  E-value=1.9e-25  Score=192.01  Aligned_cols=251  Identities=23%  Similarity=0.381  Sum_probs=193.6

Q ss_pred             EEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccC--cc------ccceeeee-eccccceEEEEEe
Q 036314           58 HILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNH--PK------KIRSFKIL-RGHKASVHSIAAE  128 (347)
Q Consensus        58 ~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~--~~------~~~~~~~~-~~h~~~V~~v~~s  128 (347)
                      .....|.-++.++++++++    .++++++.|++|.-|++.+++-...  +.      ...+.+.- .+|...+.+++.+
T Consensus       136 ~~~~~H~~s~~~vals~d~----~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS  211 (479)
T KOG0299|consen  136 RVIGKHQLSVTSVALSPDD----KRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVS  211 (479)
T ss_pred             eeeccccCcceEEEeeccc----cceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEc
Confidence            4566899999999999854    3689999999999999987753211  00      11122222 3899999999999


Q ss_pred             CCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEeCCC-CeEEEEecCC
Q 036314          129 TSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWPQQ-ETIYSASWDH  207 (347)
Q Consensus       129 ~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~l~s~s~dg  207 (347)
                      +||++|++|+.|..|.||+..+.                         +.++.+.+|.+.|.+++|..+ ..+++++.|+
T Consensus       212 ~Dgkylatgg~d~~v~Iw~~~t~-------------------------ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Dr  266 (479)
T KOG0299|consen  212 SDGKYLATGGRDRHVQIWDCDTL-------------------------EHVKVFKGHRGAVSSLAFRKGTSELYSASADR  266 (479)
T ss_pred             CCCcEEEecCCCceEEEecCccc-------------------------chhhcccccccceeeeeeecCccceeeeecCC
Confidence            99999999999999999998764                         346678999999999999654 4699999999


Q ss_pred             cEEEEECCCCceeeeeeeC-eeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCe
Q 036314          208 SVRTWDVEMGKDLSDIFCG-KALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWF  286 (347)
Q Consensus       208 ~v~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~  286 (347)
                      ++++|++.....+.+++.+ ..+..++... -...+.+|+.|.++++|++..  .  ....+.+|.+.+.|++|-.+.  
T Consensus       267 svkvw~~~~~s~vetlyGHqd~v~~IdaL~-reR~vtVGgrDrT~rlwKi~e--e--sqlifrg~~~sidcv~~In~~--  339 (479)
T KOG0299|consen  267 SVKVWSIDQLSYVETLYGHQDGVLGIDALS-RERCVTVGGRDRTVRLWKIPE--E--SQLIFRGGEGSIDCVAFINDE--  339 (479)
T ss_pred             ceEEEehhHhHHHHHHhCCccceeeechhc-ccceEEeccccceeEEEeccc--c--ceeeeeCCCCCeeeEEEeccc--
Confidence            9999999877766666543 3566666533 344666777999999999843  2  234567899899999998765  


Q ss_pred             EEEEEeCCCcEEEEEcCCCccceeec-CCC---C--------eEEEEeecCC-CEEEEccCCceEEEeecc
Q 036314          287 HLISASYDGKVMLWDLRTAWPLSVID-SHK---D--------KVLCADWWRG-DSVISGGVDSKLCVSSGV  344 (347)
Q Consensus       287 ~l~s~s~D~~i~lwd~~~~~~~~~~~-~h~---~--------~v~~~~~~~~-~~l~s~s~D~~v~vw~~~  344 (347)
                      ++++||.||.|.||++-+.+++.+.. +|.   +        -|.+++-.++ +.+||||.+|.|++|...
T Consensus       340 HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~  410 (479)
T KOG0299|consen  340 HFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIE  410 (479)
T ss_pred             ceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEec
Confidence            69999999999999999888877642 332   1        3556666554 579999999999999764

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=1.8e-24  Score=178.21  Aligned_cols=246  Identities=19%  Similarity=0.242  Sum_probs=189.3

Q ss_pred             EEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEe
Q 036314           58 HILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSG  137 (347)
Q Consensus        58 ~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sg  137 (347)
                      +.|..-.+.|+++.|+.++    ..|+++++|.++++||...++         ..+++..++-.|..+.|-.....++.+
T Consensus         8 k~f~~~~~~i~sl~fs~~G----~~litss~dDsl~LYd~~~g~---------~~~ti~skkyG~~~~~Fth~~~~~i~s   74 (311)
T KOG1446|consen    8 KVFRETNGKINSLDFSDDG----LLLITSSEDDSLRLYDSLSGK---------QVKTINSKKYGVDLACFTHHSNTVIHS   74 (311)
T ss_pred             cccccCCCceeEEEecCCC----CEEEEecCCCeEEEEEcCCCc---------eeeEeecccccccEEEEecCCceEEEc
Confidence            3455667889999999844    468889999999999998765         345677777888889997766666666


Q ss_pred             eC--CCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEe-CCCCeEEEEecCCcEEEEEC
Q 036314          138 SW--DCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDV  214 (347)
Q Consensus       138 s~--Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~l~s~s~dg~v~vwd~  214 (347)
                      +.  |.+||.-++.+.                         +.++.+.||.+.|.++.. |-++.++|++.|++|++||+
T Consensus        75 Stk~d~tIryLsl~dN-------------------------kylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDl  129 (311)
T KOG1446|consen   75 STKEDDTIRYLSLHDN-------------------------KYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDL  129 (311)
T ss_pred             cCCCCCceEEEEeecC-------------------------ceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEe
Confidence            65  899999988753                         568899999999999986 56788999999999999999


Q ss_pred             CCCceeeeeeeCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCC-CCCeEEec-CCCCCeeEEEeCCCCCeEEEEEe
Q 036314          215 EMGKDLSDIFCGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGT-SAPVFQFS-SHNSWISACKWHNKSWFHLISAS  292 (347)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~-~~~~~~~~-~h~~~v~~v~~s~~~~~~l~s~s  292 (347)
                      +..++...+.... ....++.| .+.++|++...+.|++||+|.-+. +...+.+. +.......+.|+|+|.++|+ +.
T Consensus       130 R~~~cqg~l~~~~-~pi~AfDp-~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLl-sT  206 (311)
T KOG1446|consen  130 RVKKCQGLLNLSG-RPIAAFDP-EGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILL-ST  206 (311)
T ss_pred             cCCCCceEEecCC-CcceeECC-CCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEE-Ee
Confidence            9877765554322 23456654 456888887777999999987432 22223332 34566789999999987555 56


Q ss_pred             CCCcEEEEEcCCCccceeecCCCCeE---EEEeecC-CCEEEEccCCceEEEeecc
Q 036314          293 YDGKVMLWDLRTAWPLSVIDSHKDKV---LCADWWR-GDSVISGGVDSKLCVSSGV  344 (347)
Q Consensus       293 ~D~~i~lwd~~~~~~~~~~~~h~~~v---~~~~~~~-~~~l~s~s~D~~v~vw~~~  344 (347)
                      ..+.+.+.|.=+|....++++|.+.-   ....|.| ++.+.+|+.||+|.+|...
T Consensus       207 ~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~  262 (311)
T KOG1446|consen  207 NASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLE  262 (311)
T ss_pred             CCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcC
Confidence            67889999999999888888776543   5677865 6779999999999999864

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.94  E-value=4.3e-25  Score=188.55  Aligned_cols=235  Identities=23%  Similarity=0.350  Sum_probs=192.6

Q ss_pred             CceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEE
Q 036314           65 GAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTIS  144 (347)
Q Consensus        65 ~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~  144 (347)
                      ..+.++...+..+    .++||+.|.++-++|.+.++         .+.++.||...|+++.|+++...+++++.|..|+
T Consensus       220 pgi~ald~~~s~~----~ilTGG~d~~av~~d~~s~q---------~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~  286 (506)
T KOG0289|consen  220 PGITALDIIPSSS----KILTGGEDKTAVLFDKPSNQ---------ILATLKGHTKKITSVKFHKDLDTVITASADEIIR  286 (506)
T ss_pred             CCeeEEeecCCCC----cceecCCCCceEEEecchhh---------hhhhccCcceEEEEEEeccchhheeecCCcceEE
Confidence            3467777776422    58999999999999988765         4567899999999999999999999999999999


Q ss_pred             EEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEe-CCCCeEEEEecCCcEEEEECCCCceeeee
Q 036314          145 LWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDI  223 (347)
Q Consensus       145 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~l~s~s~dg~v~vwd~~~~~~~~~~  223 (347)
                      ||......                         .......|..+|..+.. +.+++|++++.|++....|++++..+...
T Consensus       287 vws~~~~s-------------------------~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~v  341 (506)
T KOG0289|consen  287 VWSVPLSS-------------------------EPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVV  341 (506)
T ss_pred             eecccccc-------------------------CccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEE
Confidence            99876432                         22345668899998875 78999999999999999999999887766


Q ss_pred             eeC---eeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEE
Q 036314          224 FCG---KALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLW  300 (347)
Q Consensus       224 ~~~---~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lw  300 (347)
                      ...   -.+.+.+|+|+ +.+|.+|..|+.++|||+..+.   ....|.+|.+.|.+++|+.+| |+||+++.|+.|++|
T Consensus       342 s~~~s~v~~ts~~fHpD-gLifgtgt~d~~vkiwdlks~~---~~a~Fpght~~vk~i~FsENG-Y~Lat~add~~V~lw  416 (506)
T KOG0289|consen  342 SDETSDVEYTSAAFHPD-GLIFGTGTPDGVVKIWDLKSQT---NVAKFPGHTGPVKAISFSENG-YWLATAADDGSVKLW  416 (506)
T ss_pred             eeccccceeEEeeEcCC-ceEEeccCCCceEEEEEcCCcc---ccccCCCCCCceeEEEeccCc-eEEEEEecCCeEEEE
Confidence            553   24678899765 6789999999999999998643   467899999999999999877 679999999999999


Q ss_pred             EcCCCccceeecCC-CCeEEEEeec-CCCEEEEccCCceEEEee
Q 036314          301 DLRTAWPLSVIDSH-KDKVLCADWW-RGDSVISGGVDSKLCVSS  342 (347)
Q Consensus       301 d~~~~~~~~~~~~h-~~~v~~~~~~-~~~~l~s~s~D~~v~vw~  342 (347)
                      |+|+-+..+++.-. ...|.++.|- .|++|+.+|.|=.|.++.
T Consensus       417 DLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~  460 (506)
T KOG0289|consen  417 DLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICK  460 (506)
T ss_pred             EehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEe
Confidence            99998777776432 2358888885 488999998776666554

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.94  E-value=8.6e-27  Score=192.39  Aligned_cols=248  Identities=23%  Similarity=0.340  Sum_probs=198.3

Q ss_pred             eccCCCCcCCCCCcCCceeeccCCC-CCEEEEEecCCeEEEEcC-CCeEEEEee-ccCCceEEEEEeecCCCceEEEEEc
Q 036314           10 KAVAPQKEEEPSLHDDWVSAVDGSN-PGFILTGCYDNLGRVWKA-GGVCTHILE-GHCGAVSSVNIIKSDGLKYVTVATA   86 (347)
Q Consensus        10 ~~~~~~~~~~~~~h~~~v~~~~~~~-~~~l~sg~~d~~i~iw~~-~~~~~~~l~-~h~~~V~~v~~~~~~~~~~~~l~s~   86 (347)
                      |++.||.....+.|+++|.|++|+. ...||||+.||.|++|.+ .|.|++.|. .|+..|.++.|+.++.    .++++
T Consensus       249 KDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~S----qiLS~  324 (508)
T KOG0275|consen  249 KDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNS----QILSA  324 (508)
T ss_pred             hhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcc----hhhcc
Confidence            6788999999999999999999994 569999999999999996 589988887 8999999999998554    58999


Q ss_pred             cCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCC
Q 036314           87 SKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGN  166 (347)
Q Consensus        87 s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~  166 (347)
                      |.|.++|+..+.++++         ++.++||+.-|+.+.|.+||..++++|.||+|++|+..+.++             
T Consensus       325 sfD~tvRiHGlKSGK~---------LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC-------------  382 (508)
T KOG0275|consen  325 SFDQTVRIHGLKSGKC---------LKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTEC-------------  382 (508)
T ss_pred             cccceEEEeccccchh---------HHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhh-------------
Confidence            9999999999988864         556899999999999999999999999999999999876543             


Q ss_pred             Ccccccccccccccccc--CCccceEEEE-eC-CCCeEEEEecCCcEEEEECCCCceeeeeeeCe----eeEEEEeeCCC
Q 036314          167 NQVEEPQLEGEAISTLV--GHTQCVSSVV-WP-QQETIYSASWDHSVRTWDVEMGKDLSDIFCGK----ALNCIDIGGEG  238 (347)
Q Consensus       167 ~~~~~~~~~~~~~~~~~--~h~~~v~~~~-~~-~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~----~~~~~~~~~~~  238 (347)
                                  +.+++  +..-+|+++. +| +.+.++.+...+++.+-++. |+.++.+..++    ...+..++| .
T Consensus       383 ------------~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi~~~lSp-k  448 (508)
T KOG0275|consen  383 ------------LSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILSP-K  448 (508)
T ss_pred             ------------hhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCceEEEEecC-C
Confidence                        22332  2234566665 45 34567778888899988864 56666665432    233444544 4


Q ss_pred             CcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEE
Q 036314          239 SALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWD  301 (347)
Q Consensus       239 ~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd  301 (347)
                      +..+...++|+.++-|....++   ...++.-|..-|-.+.-+|.. .+||+=++||.+++|.
T Consensus       449 GewiYcigED~vlYCF~~~sG~---LE~tl~VhEkdvIGl~HHPHq-NllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  449 GEWIYCIGEDGVLYCFSVLSGK---LERTLPVHEKDVIGLTHHPHQ-NLLASYSEDGLLKLWK  507 (508)
T ss_pred             CcEEEEEccCcEEEEEEeecCc---eeeeeecccccccccccCccc-chhhhhcccchhhhcC
Confidence            5677788899999999876532   346777898888888888876 4799999999999994

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.94  E-value=3.1e-25  Score=178.59  Aligned_cols=207  Identities=23%  Similarity=0.396  Sum_probs=174.3

Q ss_pred             eeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEE
Q 036314          114 ILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVV  193 (347)
Q Consensus       114 ~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~  193 (347)
                      .+.||+.+++.+.|+.+|.+|+|++.|.++.+|-..+                         ++.+.++.||+++|+++.
T Consensus         5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~n-------------------------GerlGty~GHtGavW~~D   59 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLN-------------------------GERLGTYDGHTGAVWCCD   59 (327)
T ss_pred             ccccCccccceEEecCCCcEEEEecCCCCceEEEecC-------------------------CceeeeecCCCceEEEEE
Confidence            3679999999999999999999999999999996543                         456789999999999998


Q ss_pred             eC-CCCeEEEEecCCcEEEEECCCCceeeeeeeCeeeEEEEeeCCCCcEEEEe----cCCCcEEEEeCCCCC----CCCC
Q 036314          194 WP-QQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEGSALIAAG----GSDPILRIWDPRKPG----TSAP  264 (347)
Q Consensus       194 ~~-~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~----~~d~~i~iwd~~~~~----~~~~  264 (347)
                      .. +...+++|+.|.++++||+++|+++..+..+.++..+.|+..+...+++.    +..+.|.++|++...    ...|
T Consensus        60 id~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep  139 (327)
T KOG0643|consen   60 IDWDSKHLITGSADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEP  139 (327)
T ss_pred             ecCCcceeeeccccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCc
Confidence            74 56789999999999999999999999999899999999976654444332    345889999998432    2345


Q ss_pred             eEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCcc-ceeecCCCCeEEEEeecC-CCEEEEccCCceEEEee
Q 036314          265 VFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWP-LSVIDSHKDKVLCADWWR-GDSVISGGVDSKLCVSS  342 (347)
Q Consensus       265 ~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~-~~~~~~h~~~v~~~~~~~-~~~l~s~s~D~~v~vw~  342 (347)
                      ...+.-+.+.++...|.|-+. .|++|..||.|.+||+++|+. +..-+.|...|..+.+++ ..+++++|.|.+-++|+
T Consensus       140 ~~kI~t~~skit~a~Wg~l~~-~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D  218 (327)
T KOG0643|consen  140 YLKIPTPDSKITSALWGPLGE-TIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVD  218 (327)
T ss_pred             eEEecCCccceeeeeecccCC-EEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeee
Confidence            667777888999999999986 499999999999999999855 455578999999999985 56899999999999998


Q ss_pred             cccC
Q 036314          343 GVSI  346 (347)
Q Consensus       343 ~~~~  346 (347)
                      --+.
T Consensus       219 ~~tl  222 (327)
T KOG0643|consen  219 VRTL  222 (327)
T ss_pred             ccce
Confidence            7643

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.94  E-value=1.3e-26  Score=193.63  Aligned_cols=242  Identities=19%  Similarity=0.361  Sum_probs=184.1

Q ss_pred             eEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEE
Q 036314           55 VCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMV  134 (347)
Q Consensus        55 ~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l  134 (347)
                      ..+..|.||.+.|.+++=+|..   ...++||+.||.|++||+...+         ++.+|.+|.+.|..+++..  ..+
T Consensus        57 PFv~~L~gHrdGV~~lakhp~~---ls~~aSGs~DG~VkiWnlsqR~---------~~~~f~AH~G~V~Gi~v~~--~~~  122 (433)
T KOG0268|consen   57 PFVGSLDGHRDGVSCLAKHPNK---LSTVASGSCDGEVKIWNLSQRE---------CIRTFKAHEGLVRGICVTQ--TSF  122 (433)
T ss_pred             cchhhccccccccchhhcCcch---hhhhhccccCceEEEEehhhhh---------hhheeecccCceeeEEecc--cce
Confidence            3456788999999999988743   2358999999999999997643         5568899999999999876  678


Q ss_pred             EEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEeC-CCCeEEEEecCCcEEEEE
Q 036314          135 CSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWP-QQETIYSASWDHSVRTWD  213 (347)
Q Consensus       135 ~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~l~s~s~dg~v~vwd  213 (347)
                      ++++.|.+|+.|.++.+.                          +.++.+. ..+..+... .+..++|++.  .|.|||
T Consensus       123 ~tvgdDKtvK~wk~~~~p--------------------------~~tilg~-s~~~gIdh~~~~~~FaTcGe--~i~IWD  173 (433)
T KOG0268|consen  123 FTVGDDKTVKQWKIDGPP--------------------------LHTILGK-SVYLGIDHHRKNSVFATCGE--QIDIWD  173 (433)
T ss_pred             EEecCCcceeeeeccCCc--------------------------ceeeecc-ccccccccccccccccccCc--eeeecc
Confidence            999999999999876421                          1111111 112222221 2345666654  499999


Q ss_pred             CCCCceeeeeeeCe-eeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEe
Q 036314          214 VEMGKDLSDIFCGK-ALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISAS  292 (347)
Q Consensus       214 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s  292 (347)
                      .+...++..+..+. .+.++.+.|....+|++++.|+.|.|||++..... ....+.   -.-+.++|+|.. .-+++|+
T Consensus       174 ~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl-~KVi~~---mRTN~IswnPea-fnF~~a~  248 (433)
T KOG0268|consen  174 EQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPL-KKVILT---MRTNTICWNPEA-FNFVAAN  248 (433)
T ss_pred             cccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCcc-ceeeee---ccccceecCccc-cceeecc
Confidence            98888888777654 47888998888889999999999999999864322 112222   233568999965 5699999


Q ss_pred             CCCcEEEEEcCCC-ccceeecCCCCeEEEEeecC-CCEEEEccCCceEEEeecc
Q 036314          293 YDGKVMLWDLRTA-WPLSVIDSHKDKVLCADWWR-GDSVISGGVDSKLCVSSGV  344 (347)
Q Consensus       293 ~D~~i~lwd~~~~-~~~~~~~~h~~~v~~~~~~~-~~~l~s~s~D~~v~vw~~~  344 (347)
                      +|..+..+|++.- .++.++.+|.++|+.|+|+| |+-++|||.|.+|+|+-..
T Consensus       249 ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~  302 (433)
T KOG0268|consen  249 EDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVN  302 (433)
T ss_pred             ccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecC
Confidence            9999999999974 67888999999999999997 7779999999999998653

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=4.6e-24  Score=168.11  Aligned_cols=255  Identities=22%  Similarity=0.285  Sum_probs=181.7

Q ss_pred             EEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccc-------cCccccceeeeeeccccceEEEEEe
Q 036314           56 CTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELV-------NHPKKIRSFKILRGHKASVHSIAAE  128 (347)
Q Consensus        56 ~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~-------~~~~~~~~~~~~~~h~~~V~~v~~s  128 (347)
                      ++.+|.. +..|.+++|+|.++    ..+.||+..+.|+--...-.-+       .+|. ....+.-+.|.+.|.|++|+
T Consensus        25 ~i~~l~d-sqairav~fhp~g~----lyavgsnskt~ric~yp~l~~~r~~hea~~~pp-~v~~kr~khhkgsiyc~~ws   98 (350)
T KOG0641|consen   25 AINILED-SQAIRAVAFHPAGG----LYAVGSNSKTFRICAYPALIDLRHAHEAAKQPP-SVLCKRNKHHKGSIYCTAWS   98 (350)
T ss_pred             EEEEecc-hhheeeEEecCCCc----eEEeccCCceEEEEccccccCcccccccccCCC-eEEeeeccccCccEEEEEec
Confidence            3344443 35589999999665    5788999999999865422111       1111 12223446789999999999


Q ss_pred             CCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEeC-----CCCeEEEE
Q 036314          129 TSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWP-----QQETIYSA  203 (347)
Q Consensus       129 ~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-----~~~~l~s~  203 (347)
                      |+|.++++||.|.+|++...+...+.                   ..+. -..+.-|.+.|+.++|-     .+..|+++
T Consensus        99 ~~geliatgsndk~ik~l~fn~dt~~-------------------~~g~-dle~nmhdgtirdl~fld~~~s~~~il~s~  158 (350)
T KOG0641|consen   99 PCGELIATGSNDKTIKVLPFNADTCN-------------------ATGH-DLEFNMHDGTIRDLAFLDDPESGGAILASA  158 (350)
T ss_pred             CccCeEEecCCCceEEEEeccccccc-------------------ccCc-ceeeeecCCceeeeEEecCCCcCceEEEec
Confidence            99999999999999999765432111                   0111 11345588899999982     23345654


Q ss_pred             e-cCCcEEEEECCCCceeeeeeeC--eeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEec--CC-----CC
Q 036314          204 S-WDHSVRTWDVEMGKDLSDIFCG--KALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFS--SH-----NS  273 (347)
Q Consensus       204 s-~dg~v~vwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~--~h-----~~  273 (347)
                      + .|..|.+=|...++....+..+  +...-..|   ++.++++|++|.+|++||++-+.   .+.++.  -|     .+
T Consensus       159 gagdc~iy~tdc~~g~~~~a~sghtghilalysw---n~~m~~sgsqdktirfwdlrv~~---~v~~l~~~~~~~gless  232 (350)
T KOG0641|consen  159 GAGDCKIYITDCGRGQGFHALSGHTGHILALYSW---NGAMFASGSQDKTIRFWDLRVNS---CVNTLDNDFHDGGLESS  232 (350)
T ss_pred             CCCcceEEEeecCCCCcceeecCCcccEEEEEEe---cCcEEEccCCCceEEEEeeeccc---eeeeccCcccCCCcccc
Confidence            3 3455555577777766665532  23333344   34689999999999999998532   222221  11     25


Q ss_pred             CeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecCCCCeEEEEeecCCC-EEEEccCCceEEEeec
Q 036314          274 WISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKVLCADWWRGD-SVISGGVDSKLCVSSG  343 (347)
Q Consensus       274 ~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~s~D~~v~vw~~  343 (347)
                      .|.+++..|.|+ +|++|-.|..+.+||++.+.+++.+-.|...|+||.|+||. +|.++|.|..|++-+.
T Consensus       233 avaav~vdpsgr-ll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdl  302 (350)
T KOG0641|consen  233 AVAAVAVDPSGR-LLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDL  302 (350)
T ss_pred             eeEEEEECCCcc-eeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeec
Confidence            689999999984 79999999999999999999999999999999999999987 6999999999998763

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.94  E-value=6.2e-26  Score=186.24  Aligned_cols=221  Identities=22%  Similarity=0.313  Sum_probs=169.1

Q ss_pred             eeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEE
Q 036314          114 ILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVV  193 (347)
Q Consensus       114 ~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~  193 (347)
                      .+..|+.++++.+|++||.++++||.|..|+|.|++..-....+.       .......+..-..++++-.|.+.|+.+.
T Consensus       107 ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~-------em~~~~~qa~hPvIRTlYDH~devn~l~  179 (430)
T KOG0640|consen  107 YLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPK-------EMISGDTQARHPVIRTLYDHVDEVNDLD  179 (430)
T ss_pred             EEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchh-------hhccCCcccCCceEeehhhccCccccee
Confidence            467899999999999999999999999999999987542211100       0111112222245788999999999999


Q ss_pred             e-CCCCeEEEEecCCcEEEEECCCCce---eeeeeeCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEec
Q 036314          194 W-PQQETIYSASWDHSVRTWDVEMGKD---LSDIFCGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFS  269 (347)
Q Consensus       194 ~-~~~~~l~s~s~dg~v~vwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~  269 (347)
                      | |....|+|++.|++|+++|......   .+.++...++.++.|+|.+ .++++|.+-.++++||+.....-.+...-.
T Consensus       180 FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsG-efllvgTdHp~~rlYdv~T~QcfvsanPd~  258 (430)
T KOG0640|consen  180 FHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSG-EFLLVGTDHPTLRLYDVNTYQCFVSANPDD  258 (430)
T ss_pred             ecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCC-ceEEEecCCCceeEEeccceeEeeecCccc
Confidence            8 5567799999999999999865432   2334556789999998754 588889999999999986321100011124


Q ss_pred             CCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceee-cCCCC-eEEEEeec-CCCEEEEccCCceEEEeec
Q 036314          270 SHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVI-DSHKD-KVLCADWW-RGDSVISGGVDSKLCVSSG  343 (347)
Q Consensus       270 ~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~-~~h~~-~v~~~~~~-~~~~l~s~s~D~~v~vw~~  343 (347)
                      +|.+.|.++.+++.+. +-++||.||.|||||=-.++++.++ .+|.+ .|-+..|. +|+++.|.|+|.+|++|-.
T Consensus       259 qht~ai~~V~Ys~t~~-lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi  334 (430)
T KOG0640|consen  259 QHTGAITQVRYSSTGS-LYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEI  334 (430)
T ss_pred             ccccceeEEEecCCcc-EEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeee
Confidence            6899999999999985 6899999999999998888888887 46754 56778896 7889999999999999964

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=1.6e-25  Score=203.27  Aligned_cols=265  Identities=20%  Similarity=0.379  Sum_probs=195.1

Q ss_pred             EEEEEecCCeEEEEcCC-----CeEEEEeeccCCc---eEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccc
Q 036314           37 FILTGCYDNLGRVWKAG-----GVCTHILEGHCGA---VSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKK  108 (347)
Q Consensus        37 ~l~sg~~d~~i~iw~~~-----~~~~~~l~~h~~~---V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~  108 (347)
                      .|+-+|. ...+++...     -.|...+.+-...   ...|+|..   .....|||++..|.|-+||+...      ..
T Consensus        53 qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~---~~~NlIAT~s~nG~i~vWdlnk~------~r  122 (839)
T KOG0269|consen   53 QIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQ---LYSNLIATCSTNGVISVWDLNKS------IR  122 (839)
T ss_pred             eeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhccccc---chhhhheeecCCCcEEEEecCcc------cc
Confidence            4554443 356677542     1333333333322   23455653   23357999999999999999751      11


Q ss_pred             cceeeeeeccccceEEEEEeCCC-CEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCcc
Q 036314          109 IRSFKILRGHKASVHSIAAETSG-NMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQ  187 (347)
Q Consensus       109 ~~~~~~~~~h~~~V~~v~~s~~~-~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  187 (347)
                      .+.+..|..|+..++++.|++.. .+|+|||.||+||+||++....                         ..++.+...
T Consensus       123 nk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S-------------------------~~t~~~nSE  177 (839)
T KOG0269|consen  123 NKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS-------------------------KSTFRSNSE  177 (839)
T ss_pred             chhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc-------------------------cccccccch
Confidence            12344678899999999998875 6889999999999999986432                         234555667


Q ss_pred             ceEEEEeC--CCCeEEEEecCCcEEEEECCCCcee-eeee-eCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCC
Q 036314          188 CVSSVVWP--QQETIYSASWDHSVRTWDVEMGKDL-SDIF-CGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSA  263 (347)
Q Consensus       188 ~v~~~~~~--~~~~l~s~s~dg~v~vwd~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~  263 (347)
                      .|+.+.|.  .+.+++++...|.+++||++..... ..+. +..++.|+.++| ++.+||+||.|+.|+|||..... ..
T Consensus       178 SiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhP-nr~~lATGGRDK~vkiWd~t~~~-~~  255 (839)
T KOG0269|consen  178 SIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHP-NREWLATGGRDKMVKIWDMTDSR-AK  255 (839)
T ss_pred             hhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecC-CCceeeecCCCccEEEEeccCCC-cc
Confidence            88999984  4668999999999999999976543 3332 345889999988 67799999999999999987532 33


Q ss_pred             CeEEecCCCCCeeEEEeCCCCCeEEEEEe--CCCcEEEEEcCCCc-cceeecCCCCeEEEEeecCC--CEEEEccCCceE
Q 036314          264 PVFQFSSHNSWISACKWHNKSWFHLISAS--YDGKVMLWDLRTAW-PLSVIDSHKDKVLCADWWRG--DSVISGGVDSKL  338 (347)
Q Consensus       264 ~~~~~~~h~~~v~~v~~s~~~~~~l~s~s--~D~~i~lwd~~~~~-~~~~~~~h~~~v~~~~~~~~--~~l~s~s~D~~v  338 (347)
                      ++.++. ....|.+|+|-|...++||+++  .|..|+|||++..- |-.++..|.+.|..+.|..+  ..|.++|.|++|
T Consensus       256 ~~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv  334 (839)
T KOG0269|consen  256 PKHTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTV  334 (839)
T ss_pred             ceeEEe-ecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHH
Confidence            444442 4457999999999999999998  48899999999874 45678999999999999533  358999999987


Q ss_pred             E
Q 036314          339 C  339 (347)
Q Consensus       339 ~  339 (347)
                      .
T Consensus       335 ~  335 (839)
T KOG0269|consen  335 L  335 (839)
T ss_pred             H
Confidence            4

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=6.9e-26  Score=205.64  Aligned_cols=234  Identities=20%  Similarity=0.357  Sum_probs=193.6

Q ss_pred             CCCEEEEEecCCeEEEEcCC----CeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCcccc
Q 036314           34 NPGFILTGCYDNLGRVWKAG----GVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKI  109 (347)
Q Consensus        34 ~~~~l~sg~~d~~i~iw~~~----~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~  109 (347)
                      ..++|||++..|.|-+||+.    .+.+..|..|+..++++.|++...   ..|+|||.||+||+||+...+        
T Consensus        99 ~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep---~iliSGSQDg~vK~~DlR~~~--------  167 (839)
T KOG0269|consen   99 YSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEP---NILISGSQDGTVKCWDLRSKK--------  167 (839)
T ss_pred             hhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCc---cEEEecCCCceEEEEeeeccc--------
Confidence            46799999999999999974    345567999999999999987543   489999999999999997543        


Q ss_pred             ceeeeeeccccceEEEEEeCC-CCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccc
Q 036314          110 RSFKILRGHKASVHSIAAETS-GNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQC  188 (347)
Q Consensus       110 ~~~~~~~~h~~~V~~v~~s~~-~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  188 (347)
                       ...++.+....|+.|.|+|- +..|+++...|.+++||++.+.                        .+...+..|+++
T Consensus       168 -S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~------------------------r~~~k~~AH~Gp  222 (839)
T KOG0269|consen  168 -SKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPD------------------------RCEKKLTAHNGP  222 (839)
T ss_pred             -ccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCch------------------------hHHHHhhcccCc
Confidence             33456778888999999884 6899999999999999998642                        345677889999


Q ss_pred             eEEEEe-CCCCeEEEEecCCcEEEEECCCCc--eeeeeeeCeeeEEEEeeCCCCcEEEEec--CCCcEEEEeCCCCCCCC
Q 036314          189 VSSVVW-PQQETIYSASWDHSVRTWDVEMGK--DLSDIFCGKALNCIDIGGEGSALIAAGG--SDPILRIWDPRKPGTSA  263 (347)
Q Consensus       189 v~~~~~-~~~~~l~s~s~dg~v~vwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~la~~~--~d~~i~iwd~~~~~~~~  263 (347)
                      |.++-| |++.+||+||.|++|+|||..+++  ....+....++.++.|-|....+||+++  .|-.|++||++.+  ..
T Consensus       223 V~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRP--YI  300 (839)
T KOG0269|consen  223 VLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRP--YI  300 (839)
T ss_pred             eEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccc--cc
Confidence            999998 677789999999999999987553  3455666778999999988888888874  5889999999964  45


Q ss_pred             CeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCC
Q 036314          264 PVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTA  305 (347)
Q Consensus       264 ~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~  305 (347)
                      |..++..|.+-+..++|.......|.+++.|++|..--++.+
T Consensus       301 P~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kna  342 (839)
T KOG0269|consen  301 PYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNA  342 (839)
T ss_pred             cceeeeccCccccceeccCCCceeeEeecCccHHHHhhhhcc
Confidence            778999999999999997755667999999999876655543

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.94  E-value=8.2e-25  Score=183.86  Aligned_cols=261  Identities=24%  Similarity=0.425  Sum_probs=195.9

Q ss_pred             eeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEecccc-------ccccCccccceeeeeeccccceEEEEEeCCC-
Q 036314           60 LEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAE-------ELVNHPKKIRSFKILRGHKASVHSIAAETSG-  131 (347)
Q Consensus        60 l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~-------~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~-  131 (347)
                      ..+|.+.++.++..+.+  .....++=++.|.|++|++...       ++.......+++.++.+|...=..++|||-- 
T Consensus       147 ~i~h~g~~NRvr~~~~~--~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~  224 (440)
T KOG0302|consen  147 SIPHYGGINRVRVSRLG--NEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKT  224 (440)
T ss_pred             ccccccccceeeecccC--CcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccc
Confidence            44677888888887754  3356788899999999997522       2222334567888999999999999999943 


Q ss_pred             CEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEeC--CCCeEEEEecCCcE
Q 036314          132 NMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWP--QQETIYSASWDHSV  209 (347)
Q Consensus       132 ~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~l~s~s~dg~v  209 (347)
                      ..++||.--+.|++|...++...                      ...+.+.+|+..|-.+.|+  ....|+|+|.||+|
T Consensus       225 g~LlsGDc~~~I~lw~~~~g~W~----------------------vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsI  282 (440)
T KOG0302|consen  225 GRLLSGDCVKGIHLWEPSTGSWK----------------------VDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSI  282 (440)
T ss_pred             cccccCccccceEeeeeccCcee----------------------ecCccccccccchhhhccCCccCceEEeeecCceE
Confidence            24777777788999987654221                      1123466799999999995  34579999999999


Q ss_pred             EEEECCCCc---eeeeeeeCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCe
Q 036314          210 RTWDVEMGK---DLSDIFCGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWF  286 (347)
Q Consensus       210 ~vwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~  286 (347)
                      +|||+|.+.   ++..-.+...++.++|...-. +||+|+.||+++|||+|.-....++.+|.-|...|+++.|+|....
T Consensus       283 rIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~-lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s  361 (440)
T KOG0302|consen  283 RIWDIRSGPKKAAVSTKAHNSDVNVISWNRREP-LLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDS  361 (440)
T ss_pred             EEEEecCCCccceeEeeccCCceeeEEccCCcc-eeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCc
Confidence            999999873   333322345788899975544 8999999999999999976555688899999999999999998888


Q ss_pred             EEEEEeCCCcEEEEEcCCCc----------------cceeecCC--CCeEEEEeecC--CCEEEEccCCceEEEeecccC
Q 036314          287 HLISASYDGKVMLWDLRTAW----------------PLSVIDSH--KDKVLCADWWR--GDSVISGGVDSKLCVSSGVSI  346 (347)
Q Consensus       287 ~l~s~s~D~~i~lwd~~~~~----------------~~~~~~~h--~~~v~~~~~~~--~~~l~s~s~D~~v~vw~~~~~  346 (347)
                      .|++++.|.+|.|||+....                +.+.+.-|  +..+..|.|++  ..+|+|.+.|| ++||.++||
T Consensus       362 ~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVfktIsv  440 (440)
T KOG0302|consen  362 VIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVFKTISV  440 (440)
T ss_pred             eEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEEEeccC
Confidence            89999999999999986321                11223334  34678899974  33777778787 567877765

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.94  E-value=4.7e-25  Score=179.93  Aligned_cols=213  Identities=25%  Similarity=0.379  Sum_probs=164.8

Q ss_pred             eeccccceEEEEEeC-CCCEEEEeeCCCcEEEEecCCCCCCC-ccceeeeccCCCccccccccccc---cccccCCccce
Q 036314          115 LRGHKASVHSIAAET-SGNMVCSGSWDCTISLWRTNDSDAAG-NQVSIKKRKGNNQVEEPQLEGEA---ISTLVGHTQCV  189 (347)
Q Consensus       115 ~~~h~~~V~~v~~s~-~~~~l~sgs~Dg~I~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~h~~~v  189 (347)
                      .+.|.+.|+++.+.+ .|++++||+.||.|.+||+++..... +....              ...+   ..--.+|.-.|
T Consensus        39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~--------------k~~c~v~~~h~~~Hky~i  104 (397)
T KOG4283|consen   39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIA--------------KHKCIVAKQHENGHKYAI  104 (397)
T ss_pred             eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhcccee--------------heeeeccccCCccceeee
Confidence            356999999999876 47999999999999999997532110 00000              0001   01124577788


Q ss_pred             EEEEe-C-CCCeEEEEecCCcEEEEECCCCceeeeeeeCeeeEEEEeeCCC--CcEEEEecCCCcEEEEeCCCCCCCCCe
Q 036314          190 SSVVW-P-QQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEG--SALIAAGGSDPILRIWDPRKPGTSAPV  265 (347)
Q Consensus       190 ~~~~~-~-~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~la~~~~d~~i~iwd~~~~~~~~~~  265 (347)
                      .++.| | +..++.++|.|.++++||+++-+....+.....++.-+++|-.  -.++|+|..|-.|++-|+..+   ...
T Consensus       105 ss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SG---s~s  181 (397)
T KOG4283|consen  105 SSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASG---SFS  181 (397)
T ss_pred             eeeEEeeecCceeecccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCC---cce
Confidence            99987 5 6678999999999999999998777666666666666665432  247889999999999999864   346


Q ss_pred             EEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCC-ccc--------------eeecCCCCeEEEEee-cCCCEE
Q 036314          266 FQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTA-WPL--------------SVIDSHKDKVLCADW-WRGDSV  329 (347)
Q Consensus       266 ~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~-~~~--------------~~~~~h~~~v~~~~~-~~~~~l  329 (347)
                      .+++||.+.|.++.|+|...+.|+||+.||.||+||+|.. -+.              ++-..|.++|.+++| +++.++
T Consensus       182 H~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l  261 (397)
T KOG4283|consen  182 HTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYL  261 (397)
T ss_pred             eeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhh
Confidence            7899999999999999999999999999999999999864 111              122468899999999 589999


Q ss_pred             EEccCCceEEEeecc
Q 036314          330 ISGGVDSKLCVSSGV  344 (347)
Q Consensus       330 ~s~s~D~~v~vw~~~  344 (347)
                      ++++.|..+++|.-.
T Consensus       262 ~~~gtd~r~r~wn~~  276 (397)
T KOG4283|consen  262 ASCGTDDRIRVWNME  276 (397)
T ss_pred             hhccCccceEEeecc
Confidence            999999999999754

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=1.8e-24  Score=185.29  Aligned_cols=249  Identities=22%  Similarity=0.289  Sum_probs=187.3

Q ss_pred             EEEEEeec---CCCceEEEEEccCCCcEEEEeccccccccCc------------cccceeeeeeccccceEEEEEeCCC-
Q 036314           68 SSVNIIKS---DGLKYVTVATASKDQTLRLWKFDAEELVNHP------------KKIRSFKILRGHKASVHSIAAETSG-  131 (347)
Q Consensus        68 ~~v~~~~~---~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~------------~~~~~~~~~~~h~~~V~~v~~s~~~-  131 (347)
                      .|+.|..-   .+..+.++|.|+.|..|.|||+.--..+.+.            +..+.-..-.+|+++|.+++++..- 
T Consensus       177 LC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~  256 (463)
T KOG0270|consen  177 LCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFR  256 (463)
T ss_pred             hhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccc
Confidence            45555421   2334568999999999999998632211100            0000011234799999999987764 


Q ss_pred             CEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEeC--CCCeEEEEecCCcE
Q 036314          132 NMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWP--QQETIYSASWDHSV  209 (347)
Q Consensus       132 ~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~l~s~s~dg~v  209 (347)
                      +.|||||.|.||++||+.++                         ++..++..|++.|.++.|.  ....|++|++|+++
T Consensus       257 nVLaSgsaD~TV~lWD~~~g-------------------------~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V  311 (463)
T KOG0270|consen  257 NVLASGSADKTVKLWDVDTG-------------------------KPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTV  311 (463)
T ss_pred             eeEEecCCCceEEEEEcCCC-------------------------CcceehhhcCCceeEEEecCCCceEEEeccccceE
Confidence            68899999999999999864                         3455677899999999994  45689999999999


Q ss_pred             EEEECCCCce-eeeeeeCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEE
Q 036314          210 RTWDVEMGKD-LSDIFCGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHL  288 (347)
Q Consensus       210 ~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l  288 (347)
                      ++.|.|.... -..+.....+..+.+.+.....+.++..||+|+-+|+|+++  .++.++..|.+.|.++.+++..+.+|
T Consensus       312 ~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~--~~vwt~~AHd~~ISgl~~n~~~p~~l  389 (463)
T KOG0270|consen  312 ALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPG--KPVWTLKAHDDEISGLSVNIQTPGLL  389 (463)
T ss_pred             EeeeccCccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCC--CceeEEEeccCCcceEEecCCCCcce
Confidence            9999995332 34455667788899988888888999999999999999865  56899999999999999999988999


Q ss_pred             EEEeCCCcEEEEEcCCCccceeecCCC---CeEEEEeecC--CCEEEEccCCceEEEeecc
Q 036314          289 ISASYDGKVMLWDLRTAWPLSVIDSHK---DKVLCADWWR--GDSVISGGVDSKLCVSSGV  344 (347)
Q Consensus       289 ~s~s~D~~i~lwd~~~~~~~~~~~~h~---~~v~~~~~~~--~~~l~s~s~D~~v~vw~~~  344 (347)
                      +|++.|+.+++|++..-.+-.+ ..|.   +...|+++.|  ...||.||..+.++||+..
T Consensus       390 ~t~s~d~~Vklw~~~~~~~~~v-~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~  449 (463)
T KOG0270|consen  390 STASTDKVVKLWKFDVDSPKSV-KEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIF  449 (463)
T ss_pred             eeccccceEEEEeecCCCCccc-ccccccccceeecccCCCcceEEEecCccceEEEeecc
Confidence            9999999999999875433222 1222   2334555544  3469999999999999864

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.93  E-value=7.2e-24  Score=174.00  Aligned_cols=236  Identities=19%  Similarity=0.259  Sum_probs=177.5

Q ss_pred             cCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCc
Q 036314           63 HCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCT  142 (347)
Q Consensus        63 h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~  142 (347)
                      .++.|++|.|++..+    .|+.+|.||++++||+...++.          ..-.|+.|+.+++|.+ ...+++|+.||.
T Consensus        12 P~d~IS~v~f~~~~~----~LLvssWDgslrlYdv~~~~l~----------~~~~~~~plL~c~F~d-~~~~~~G~~dg~   76 (323)
T KOG1036|consen   12 PEDGISSVKFSPSSS----DLLVSSWDGSLRLYDVPANSLK----------LKFKHGAPLLDCAFAD-ESTIVTGGLDGQ   76 (323)
T ss_pred             ChhceeeEEEcCcCC----cEEEEeccCcEEEEeccchhhh----------hheecCCceeeeeccC-CceEEEeccCce
Confidence            357799999997544    4677889999999999876431          1235899999999987 457889999999


Q ss_pred             EEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEeC-CCCeEEEEecCCcEEEEECCCCceee
Q 036314          143 ISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWP-QQETIYSASWDHSVRTWDVEMGKDLS  221 (347)
Q Consensus       143 I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~l~s~s~dg~v~vwd~~~~~~~~  221 (347)
                      |+++|+..+..                          ..+-.|..+|.++.+. ....+++||+|++|++||.+......
T Consensus        77 vr~~Dln~~~~--------------------------~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~  130 (323)
T KOG1036|consen   77 VRRYDLNTGNE--------------------------DQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVG  130 (323)
T ss_pred             EEEEEecCCcc--------------------------eeeccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccc
Confidence            99999986532                          2345688999999874 45679999999999999999755555


Q ss_pred             eeeeCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEE
Q 036314          222 DIFCGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWD  301 (347)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd  301 (347)
                      .+...+.+.|++...   +.|+.|+.|..+.+||+|....+. ...-+.-.-.++++++.|++.. .+.+|-||+|-+=.
T Consensus       131 ~~d~~kkVy~~~v~g---~~LvVg~~~r~v~iyDLRn~~~~~-q~reS~lkyqtR~v~~~pn~eG-y~~sSieGRVavE~  205 (323)
T KOG1036|consen  131 TFDQGKKVYCMDVSG---NRLVVGTSDRKVLIYDLRNLDEPF-QRRESSLKYQTRCVALVPNGEG-YVVSSIEGRVAVEY  205 (323)
T ss_pred             ccccCceEEEEeccC---CEEEEeecCceEEEEEcccccchh-hhccccceeEEEEEEEecCCCc-eEEEeecceEEEEc
Confidence            555566888988743   467788899999999999654321 1111223335789999996654 78889999998876


Q ss_pred             cCCCcc----ceeecCCC---------CeEEEEeecC-CCEEEEccCCceEEEeecc
Q 036314          302 LRTAWP----LSVIDSHK---------DKVLCADWWR-GDSVISGGVDSKLCVSSGV  344 (347)
Q Consensus       302 ~~~~~~----~~~~~~h~---------~~v~~~~~~~-~~~l~s~s~D~~v~vw~~~  344 (347)
                      ++..+.    -..|..|.         -+|.+++|+| -+.||||+.||.|.+|++-
T Consensus       206 ~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~  262 (323)
T KOG1036|consen  206 FDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLF  262 (323)
T ss_pred             cCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCc
Confidence            665421    23455554         2578999987 5679999999999999974

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.93  E-value=1.3e-23  Score=188.93  Aligned_cols=319  Identities=21%  Similarity=0.247  Sum_probs=218.0

Q ss_pred             CCCCCcCCceeeccCCC-CC---EEEEEecCCeEEEEcCC-C--eEEEEeeccCCceEEEEEeecCCCceEEEEEccCCC
Q 036314           18 EEPSLHDDWVSAVDGSN-PG---FILTGCYDNLGRVWKAG-G--VCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQ   90 (347)
Q Consensus        18 ~~~~~h~~~v~~~~~~~-~~---~l~sg~~d~~i~iw~~~-~--~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg   90 (347)
                      ....||...|+|+..-+ ..   +++||+.|++|++|.++ .  .++..+.+|...+.++.--+      ..+.+.+.|+
T Consensus        48 t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~~~~~cv~a~~------~~~~~~~ad~  121 (764)
T KOG1063|consen   48 TTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGHCKECVCVVARS------SVMTCKAADG  121 (764)
T ss_pred             EeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecCcceeEEEEEeee------eEEEeeccCc
Confidence            45679999999999542 22   79999999999999975 2  45667888888777764322      1223337899


Q ss_pred             cEEEEecccccc--c------------------c---------------------CccccceeeeeeccccceEEEEEeC
Q 036314           91 TLRLWKFDAEEL--V------------------N---------------------HPKKIRSFKILRGHKASVHSIAAET  129 (347)
Q Consensus        91 ~v~~wd~~~~~~--~------------------~---------------------~~~~~~~~~~~~~h~~~V~~v~~s~  129 (347)
                      ++.+|+.+..++  +                  .                     ...+.+....+.||.+.|++++|..
T Consensus       122 ~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~  201 (764)
T KOG1063|consen  122 TVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFAR  201 (764)
T ss_pred             eEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhc
Confidence            999999855441  0                  0                     0112345567899999999999976


Q ss_pred             CC---CEEEEeeCCCcEEEEecCCCCCCCccc---eeeeccCC---CccccccccccccccccCCccceEEEEeC-CCCe
Q 036314          130 SG---NMVCSGSWDCTISLWRTNDSDAAGNQV---SIKKRKGN---NQVEEPQLEGEAISTLVGHTQCVSSVVWP-QQET  199 (347)
Q Consensus       130 ~~---~~l~sgs~Dg~I~iwd~~~~~~~~~~~---~~~~~~~~---~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~  199 (347)
                      .+   -+++|+|.|..||||++.-.....+..   ........   ......++.-..-..+.||+++|.++.|. .+..
T Consensus       202 ~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~  281 (764)
T KOG1063|consen  202 LGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLD  281 (764)
T ss_pred             cCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhh
Confidence            54   488999999999999876433211100   00000000   00000011111123567999999999995 5568


Q ss_pred             EEEEecCCcEEEEECCC--CceeeeeeeC----e--eeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCC
Q 036314          200 IYSASWDHSVRTWDVEM--GKDLSDIFCG----K--ALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSH  271 (347)
Q Consensus       200 l~s~s~dg~v~vwd~~~--~~~~~~~~~~----~--~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h  271 (347)
                      |+|+|.|+++.+|....  |-.+..+..+    .  ......|.++ ++.+++-+.-|..++|-...+....+....+||
T Consensus       282 LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n-~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH  360 (764)
T KOG1063|consen  282 LLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPN-SNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGH  360 (764)
T ss_pred             heecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCC-CCEEEEecccCcEEEEeccCccceeeccccccc
Confidence            99999999999997543  3344333321    1  2444556554 467788889999999984333333344567899


Q ss_pred             CCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCc----cceeecCCCCeEEEEeecC-CCEEEEccCCceEEEeecc
Q 036314          272 NSWISACKWHNKSWFHLISASYDGKVMLWDLRTAW----PLSVIDSHKDKVLCADWWR-GDSVISGGVDSKLCVSSGV  344 (347)
Q Consensus       272 ~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~----~~~~~~~h~~~v~~~~~~~-~~~l~s~s~D~~v~vw~~~  344 (347)
                      .+.|.+++|.|.|. +|+|+|.|.+-||+-.-..+    .+..-+-|...+.|++|-+ .-+++||.....+|+++-|
T Consensus       361 ~~~V~dv~W~psGe-flLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aP  437 (764)
T KOG1063|consen  361 VDGVKDVDWDPSGE-FLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAP  437 (764)
T ss_pred             cccceeeeecCCCC-EEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeecccceeeeeecCc
Confidence            99999999999997 59999999999998654221    1233356888999999977 5579999999999999876

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=3e-24  Score=184.95  Aligned_cols=257  Identities=18%  Similarity=0.261  Sum_probs=198.2

Q ss_pred             CEEEEEecC-CeEEEEcCCCe-EEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceee
Q 036314           36 GFILTGCYD-NLGRVWKAGGV-CTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFK  113 (347)
Q Consensus        36 ~~l~sg~~d-~~i~iw~~~~~-~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~  113 (347)
                      .+++++... ..+-+|....+ ..+...--.++|.+++-++.    +.+|+.|..-|.+.+|.+.+|.++         .
T Consensus        51 ~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~----G~~l~ag~i~g~lYlWelssG~LL---------~  117 (476)
T KOG0646|consen   51 EYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNL----GYFLLAGTISGNLYLWELSSGILL---------N  117 (476)
T ss_pred             hheeeecccCccccccccCchhhhhhhcccccceeeeecCCC----ceEEEeecccCcEEEEEeccccHH---------H
Confidence            456665543 47778876432 11212223467889887773    357777779999999999998754         3


Q ss_pred             eeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEE
Q 036314          114 ILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVV  193 (347)
Q Consensus       114 ~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~  193 (347)
                      .+.+|-.+|+++.|+.||.+|+|||.||.|.+|.+.+.-...                ....-.++..+..|+-+|.++.
T Consensus       118 v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~----------------~~~~~~p~~~f~~HtlsITDl~  181 (476)
T KOG0646|consen  118 VLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSAD----------------NDHSVKPLHIFSDHTLSITDLQ  181 (476)
T ss_pred             HHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccc----------------cCCCccceeeeccCcceeEEEE
Confidence            568999999999999999999999999999999876421110                0001235667889999999998


Q ss_pred             eCC---CCeEEEEecCCcEEEEECCCCceeeeeeeCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCC----------
Q 036314          194 WPQ---QETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPG----------  260 (347)
Q Consensus       194 ~~~---~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~----------  260 (347)
                      ...   ..+|+|+|.|+++++||+..+..+.++..+..+.+++++|. ...+..|+.+|+|.+.++....          
T Consensus       182 ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpa-e~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~  260 (476)
T KOG0646|consen  182 IGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPA-ERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKG  260 (476)
T ss_pred             ecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEccc-ccEEEecCCcceEEeeehhcCCcccccccccc
Confidence            743   35799999999999999999999988888888999999765 4577889999999998875321          


Q ss_pred             ---CCCCeEEecCCCC--CeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecCCCCeEEEEee
Q 036314          261 ---TSAPVFQFSSHNS--WISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKVLCADW  323 (347)
Q Consensus       261 ---~~~~~~~~~~h~~--~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h~~~v~~~~~  323 (347)
                         .......+.||.+  .|+|++.+-|+. +|++|+.||.|.|||+...+.++++..-.++|..+.+
T Consensus       261 ~~~~~t~~~~~~Gh~~~~~ITcLais~Dgt-lLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i  327 (476)
T KOG0646|consen  261 RHEENTQINVLVGHENESAITCLAISTDGT-LLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQI  327 (476)
T ss_pred             cccccceeeeeccccCCcceeEEEEecCcc-EEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEe
Confidence               0112456778988  899999999984 7999999999999999988888887755778887777

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.93  E-value=5.7e-24  Score=200.07  Aligned_cols=267  Identities=18%  Similarity=0.254  Sum_probs=195.5

Q ss_pred             ccCCceEEEEEeecCCCceEEEEEcc--CCCcEEEEeccccc--cc-cCccccceeeeeeccccceEEEEEeCCCCEEEE
Q 036314           62 GHCGAVSSVNIIKSDGLKYVTVATAS--KDQTLRLWKFDAEE--LV-NHPKKIRSFKILRGHKASVHSIAAETSGNMVCS  136 (347)
Q Consensus        62 ~h~~~V~~v~~~~~~~~~~~~l~s~s--~Dg~v~~wd~~~~~--~~-~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~s  136 (347)
                      .++..|.+|+++|    ++..++||+  .|+.+++|+.+.=-  .. ....-.+.+.....|.+.|+|+.|++||++||+
T Consensus        11 H~~~~IfSIdv~p----dg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAs   86 (942)
T KOG0973|consen   11 HNEKSIFSIDVHP----DGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLAS   86 (942)
T ss_pred             cCCeeEEEEEecC----CceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEee
Confidence            3456688999999    445799999  99999999864210  00 001123455667889999999999999999999


Q ss_pred             eeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEe-CCCCeEEEEecCCcEEEEECC
Q 036314          137 GSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVE  215 (347)
Q Consensus       137 gs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~l~s~s~dg~v~vwd~~  215 (347)
                      ||.|+.|.||.....   +.........+....+    .-++...+.+|...|..+.| |++.+|+|+|.|++|.+||.+
T Consensus        87 GSDD~~v~iW~~~~~---~~~~~fgs~g~~~~vE----~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~  159 (942)
T KOG0973|consen   87 GSDDRLVMIWERAEI---GSGTVFGSTGGAKNVE----SWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAK  159 (942)
T ss_pred             ccCcceEEEeeeccc---CCcccccccccccccc----eeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccc
Confidence            999999999986531   0000000000001111    12346678999999999999 578899999999999999999


Q ss_pred             CCceeeeeeeC-eeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEec------CCCCCeeEEEeCCCCCeEE
Q 036314          216 MGKDLSDIFCG-KALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFS------SHNSWISACKWHNKSWFHL  288 (347)
Q Consensus       216 ~~~~~~~~~~~-~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~------~h~~~v~~v~~s~~~~~~l  288 (347)
                      +.+.+..+..+ ..+..+.|+|- +++||+-+.|++|++|++..-   ...+.+.      +-......+.|||||.+ |
T Consensus       160 tF~~~~vl~~H~s~VKGvs~DP~-Gky~ASqsdDrtikvwrt~dw---~i~k~It~pf~~~~~~T~f~RlSWSPDG~~-l  234 (942)
T KOG0973|consen  160 TFELLKVLRGHQSLVKGVSWDPI-GKYFASQSDDRTLKVWRTSDW---GIEKSITKPFEESPLTTFFLRLSWSPDGHH-L  234 (942)
T ss_pred             cceeeeeeecccccccceEECCc-cCeeeeecCCceEEEEEcccc---eeeEeeccchhhCCCcceeeecccCCCcCe-e
Confidence            99777777654 36788999765 468999999999999996531   1122222      23346788999999975 7


Q ss_pred             EEEe-CC---CcEEEEEcCCCccceeecCCCCeEEEEeecC------CC------------EEEEccCCceEEEeecc
Q 036314          289 ISAS-YD---GKVMLWDLRTAWPLSVIDSHKDKVLCADWWR------GD------------SVISGGVDSKLCVSSGV  344 (347)
Q Consensus       289 ~s~s-~D---~~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~------~~------------~l~s~s~D~~v~vw~~~  344 (347)
                      ++.. .+   .++.|.+-.+.+.-..|-||.+++.++.|+|      -+            .+|+||.|++|.||.+-
T Consensus       235 as~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~  312 (942)
T KOG0973|consen  235 ASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTA  312 (942)
T ss_pred             cchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecC
Confidence            7664 23   4788888877777788999999999999974      12            58999999999999874

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.93  E-value=1.6e-23  Score=188.24  Aligned_cols=292  Identities=21%  Similarity=0.329  Sum_probs=216.8

Q ss_pred             CCCcCCceeeccCC-C---CCEEEEEecCCeEEEEcC--CC--------------------eEE----------EEeecc
Q 036314           20 PSLHDDWVSAVDGS-N---PGFILTGCYDNLGRVWKA--GG--------------------VCT----------HILEGH   63 (347)
Q Consensus        20 ~~~h~~~v~~~~~~-~---~~~l~sg~~d~~i~iw~~--~~--------------------~~~----------~~l~~h   63 (347)
                      ..||++||.+++|. .   +-+|||+|+|..||||++  .+                    .+.          ..+.||
T Consensus       187 l~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GH  266 (764)
T KOG1063|consen  187 LEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGH  266 (764)
T ss_pred             eeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCc
Confidence            56999999999986 2   238999999999999964  12                    111          235699


Q ss_pred             CCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcE
Q 036314           64 CGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTI  143 (347)
Q Consensus        64 ~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I  143 (347)
                      ++-|.++.|+|..    ..|+++|+|.++.+|.....+.+  ......+....|....-...-|+|+++.+++-++-|..
T Consensus       267 eDWV~sv~W~p~~----~~LLSASaDksmiiW~pd~~tGi--Wv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~  340 (764)
T KOG1063|consen  267 EDWVYSVWWHPEG----LDLLSASADKSMIIWKPDENTGI--WVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGF  340 (764)
T ss_pred             ccceEEEEEccch----hhheecccCcceEEEecCCccce--EEEEEEeecccccccceeeEEEcCCCCEEEEecccCcE
Confidence            9999999999954    46899999999999987654211  00111222233445567788899999999999999999


Q ss_pred             EEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEe-CCCCeEEEEecCCcEEEEECCCCcee--
Q 036314          144 SLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDL--  220 (347)
Q Consensus       144 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~l~s~s~dg~v~vwd~~~~~~~--  220 (347)
                      ++|...+..                      .-.......||.+.|.++.| |.|++|+++|.|.+-|++--- ++..  
T Consensus       341 hlWkt~d~~----------------------~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~w-g~q~~w  397 (764)
T KOG1063|consen  341 HLWKTKDKT----------------------FWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARW-GRQQEW  397 (764)
T ss_pred             EEEeccCcc----------------------ceeeccccccccccceeeeecCCCCEEEEeccccceeeeccc-ccccce
Confidence            999732210                      01223456799999999999 678999999999999998643 2211  


Q ss_pred             eee----eeCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCC-------------------------------------C
Q 036314          221 SDI----FCGKALNCIDIGGEGSALIAAGGSDPILRIWDPRK-------------------------------------P  259 (347)
Q Consensus       221 ~~~----~~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~-------------------------------------~  259 (347)
                      +.+    .++..++|+++-+. ...+++|.+...+|+|+..+                                     +
T Consensus       398 HEiaRPQiHGyDl~c~~~vn~-~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~  476 (764)
T KOG1063|consen  398 HEIARPQIHGYDLTCLSFVNE-DLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFP  476 (764)
T ss_pred             eeecccccccccceeeehccC-CceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcc
Confidence            111    24567888888543 45678888888999997531                                     0


Q ss_pred             ------CC-------C-----------------------CCeEEecCCCCCeeEEEeCCCCCeEEEEEeCC-----CcEE
Q 036314          260 ------GT-------S-----------------------APVFQFSSHNSWISACKWHNKSWFHLISASYD-----GKVM  298 (347)
Q Consensus       260 ------~~-------~-----------------------~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D-----~~i~  298 (347)
                            +.       +                       ..+..+-||.-.|.+++.+|++. ++||++..     ..|+
T Consensus       477 ~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gn-liASaCKS~~~ehAvI~  555 (764)
T KOG1063|consen  477 GETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGN-LIASACKSSLKEHAVIR  555 (764)
T ss_pred             cccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCC-EEeehhhhCCccceEEE
Confidence                  00       0                       00012458999999999999985 69998754     4599


Q ss_pred             EEEcCCCccceeecCCCCeEEEEeecC-CCEEEEccCCceEEEee
Q 036314          299 LWDLRTAWPLSVIDSHKDKVLCADWWR-GDSVISGGVDSKLCVSS  342 (347)
Q Consensus       299 lwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~l~s~s~D~~v~vw~  342 (347)
                      ||+.......+.+.+|.=.|+.++||| |++|+++|.|+++.||.
T Consensus       556 lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~  600 (764)
T KOG1063|consen  556 LWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYE  600 (764)
T ss_pred             EEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeee
Confidence            999998888889999999999999985 77899999999999996

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.93  E-value=5.3e-24  Score=185.49  Aligned_cols=270  Identities=20%  Similarity=0.300  Sum_probs=185.0

Q ss_pred             CCCeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCC
Q 036314           52 AGGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSG  131 (347)
Q Consensus        52 ~~~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~  131 (347)
                      +.+.+...|.+|+..|.++++.|.+    ..++|||.|-+|++||++.-..  .....+.+.  +.-...|+++.|++.|
T Consensus       155 IP~shEi~l~hgtk~Vsal~~Dp~G----aR~~sGs~Dy~v~~wDf~gMda--s~~~fr~l~--P~E~h~i~sl~ys~Tg  226 (641)
T KOG0772|consen  155 IPGSHEIQLKHGTKIVSALAVDPSG----ARFVSGSLDYTVKFWDFQGMDA--SMRSFRQLQ--PCETHQINSLQYSVTG  226 (641)
T ss_pred             CCccceEeccCCceEEEEeeecCCC----ceeeeccccceEEEEecccccc--cchhhhccC--cccccccceeeecCCC
Confidence            3445566789999999999998854    4699999999999999874321  111122222  2234568999999999


Q ss_pred             CEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEeC--CCCeEEEEecCCcE
Q 036314          132 NMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWP--QQETIYSASWDHSV  209 (347)
Q Consensus       132 ~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~l~s~s~dg~v  209 (347)
                      .+|+..+....++|+|-...... +   ..        ...++- ..+..-+||...+.+-.|.  ..+.+++++.||++
T Consensus       227 ~~iLvvsg~aqakl~DRdG~~~~-e---~~--------KGDQYI-~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~Dgtl  293 (641)
T KOG0772|consen  227 DQILVVSGSAQAKLLDRDGFEIV-E---FS--------KGDQYI-RDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTL  293 (641)
T ss_pred             CeEEEEecCcceeEEccCCceee-e---ee--------ccchhh-hhhhccCCceeeeeccccccCcccceEEecCCCcE
Confidence            99998888889999986532110 0   00        000000 0122337899999999994  34579999999999


Q ss_pred             EEEECCCCceeeeee-e----Ce--eeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCC--CeeEEEe
Q 036314          210 RTWDVEMGKDLSDIF-C----GK--ALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNS--WISACKW  280 (347)
Q Consensus       210 ~vwd~~~~~~~~~~~-~----~~--~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~--~v~~v~~  280 (347)
                      |+||++..+....+. .    +.  ++...+|+++ +.+||+|..||.|.+||.+..........-..|..  .|+|+.|
T Consensus       294 RiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrd-g~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~F  372 (641)
T KOG0772|consen  294 RIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRD-GKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISF  372 (641)
T ss_pred             EEEecCCchhheeEEeeccCCCcccCceeeecCCC-cchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEe
Confidence            999998764333322 1    11  4566778665 55799999999999999764332222344467877  7999999


Q ss_pred             CCCCCeEEEEEeCCCcEEEEEcCCC-ccceeecCCC--CeEEEEeecCCCE-EEEccC------CceEEEeecc
Q 036314          281 HNKSWFHLISASYDGKVMLWDLRTA-WPLSVIDSHK--DKVLCADWWRGDS-VISGGV------DSKLCVSSGV  344 (347)
Q Consensus       281 s~~~~~~l~s~s~D~~i~lwd~~~~-~~~~~~~~h~--~~v~~~~~~~~~~-l~s~s~------D~~v~vw~~~  344 (347)
                      |++|. +|+|-+.|+++++||++.. +++.++.+-.  -+-+.++|||... |++|..      -+++.+++.-
T Consensus       373 S~dg~-~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~  445 (641)
T KOG0772|consen  373 SYDGN-YLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRM  445 (641)
T ss_pred             ccccc-hhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEecc
Confidence            99996 5999999999999999985 5566554422  2346789998665 556542      3567776643

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.93  E-value=1.4e-23  Score=170.83  Aligned_cols=275  Identities=21%  Similarity=0.315  Sum_probs=197.6

Q ss_pred             cCCeEEEEcC--CC-e-EEEEeeccCCceEEEEEeecCCCceEEEEEccCC-------CcEEEEeccccccccCccccce
Q 036314           43 YDNLGRVWKA--GG-V-CTHILEGHCGAVSSVNIIKSDGLKYVTVATASKD-------QTLRLWKFDAEELVNHPKKIRS  111 (347)
Q Consensus        43 ~d~~i~iw~~--~~-~-~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~D-------g~v~~wd~~~~~~~~~~~~~~~  111 (347)
                      .|++|.+-+.  .+ . ..+.|..|.+.|..++-+|-+.   ..|+|+.+|       -.+.||.+....-.......++
T Consensus        38 ~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~---~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~  114 (370)
T KOG1007|consen   38 EDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQ---RILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLEC  114 (370)
T ss_pred             CcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCC---ceEEEEEeccCCCcceeeEEEEecccccCccccchhhH
Confidence            3566666543  22 2 2456888999999999888544   356766553       2478999865421111122344


Q ss_pred             eeeee-ccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCC-CccceeeeccCCCccccccccccccccccCCccce
Q 036314          112 FKILR-GHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAA-GNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCV  189 (347)
Q Consensus       112 ~~~~~-~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v  189 (347)
                      +..+. .|-+.|.|+.|.|++..+++-. |..|.+|++...... ....+                    ..-..|+...
T Consensus       115 v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~s--------------------s~s~e~~~~f  173 (370)
T KOG1007|consen  115 VASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLS--------------------SESAEMRHSF  173 (370)
T ss_pred             hhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecc--------------------ccccccccee
Confidence            44554 4666899999999999888665 889999998765321 00000                    0001133344


Q ss_pred             EEEEeC---CCCeEEEEecCCcEEEEECCCCceeeeee--eCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCC
Q 036314          190 SSVVWP---QQETIYSASWDHSVRTWDVEMGKDLSDIF--CGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAP  264 (347)
Q Consensus       190 ~~~~~~---~~~~l~s~s~dg~v~vwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~  264 (347)
                      .+-.|+   ++..+++. .|++++.||+++.++...+.  ++..+..++|.|+...++++++.|+.|+|||.|+.  ..+
T Consensus       174 tsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~t--k~p  250 (370)
T KOG1007|consen  174 TSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKT--KFP  250 (370)
T ss_pred             cccccCCCCccceEEEe-CCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCC--Ccc
Confidence            455563   45667664 68999999999877766665  34568899999988889999999999999999974  456


Q ss_pred             eEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCC------------------------c-----cceeecCCC
Q 036314          265 VFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTA------------------------W-----PLSVIDSHK  315 (347)
Q Consensus       265 ~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~------------------------~-----~~~~~~~h~  315 (347)
                      ++.+.+|.-||.+++|+|.-..+|+|++.|..|.+|....-                        +     .+.++..|+
T Consensus       251 v~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehE  330 (370)
T KOG1007|consen  251 VQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHE  330 (370)
T ss_pred             ccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccc
Confidence            89999999999999999998889999999999999953210                        0     134677899


Q ss_pred             CeEEEEeecC--CCEEEEccCCceEEEeecc
Q 036314          316 DKVLCADWWR--GDSVISGGVDSKLCVSSGV  344 (347)
Q Consensus       316 ~~v~~~~~~~--~~~l~s~s~D~~v~vw~~~  344 (347)
                      +.|++++|+.  .-.+||-|.||.+.|-+.+
T Consensus       331 DSVY~~aWSsadPWiFASLSYDGRviIs~V~  361 (370)
T KOG1007|consen  331 DSVYALAWSSADPWIFASLSYDGRVIISSVP  361 (370)
T ss_pred             cceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence            9999999973  4479999999999987654

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=9.2e-23  Score=168.23  Aligned_cols=288  Identities=16%  Similarity=0.186  Sum_probs=192.7

Q ss_pred             CCCcCCceeeccCC-CCCEEEEEecCCeEEEEcCCC------eEEEE-ee-ccCCceEEEEEeecCCCceEEEEEccCCC
Q 036314           20 PSLHDDWVSAVDGS-NPGFILTGCYDNLGRVWKAGG------VCTHI-LE-GHCGAVSSVNIIKSDGLKYVTVATASKDQ   90 (347)
Q Consensus        20 ~~~h~~~v~~~~~~-~~~~l~sg~~d~~i~iw~~~~------~~~~~-l~-~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg   90 (347)
                      +.+|.+.|++++|+ +|.+|||.+.|++||+|+...      .+++. +. +|   -+.++|.|+...   .+++.-...
T Consensus        82 LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dh---pT~V~FapDc~s---~vv~~~~g~  155 (420)
T KOG2096|consen   82 LKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDH---PTRVVFAPDCKS---VVVSVKRGN  155 (420)
T ss_pred             hhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCC---ceEEEECCCcce---EEEEEccCC
Confidence            56899999999997 678999999999999998742      22221 11 23   467889886542   556666777


Q ss_pred             cEEEEeccccc---cccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCC
Q 036314           91 TLRLWKFDAEE---LVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNN  167 (347)
Q Consensus        91 ~v~~wd~~~~~---~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~  167 (347)
                      ++++|.+...+   .....-++-....-+-|+-.+..+-....+++|.|++.|.+|.||++... ..+..          
T Consensus       156 ~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkGq-~L~~i----------  224 (420)
T KOG2096|consen  156 KLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLKGQ-LLQSI----------  224 (420)
T ss_pred             EEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecCCc-eeeee----------
Confidence            99999875432   11111111111122357778888888888899999999999999998622 11000          


Q ss_pred             ccccccccccccccccCCccceEEEEeCCCCeEEEEecCCcEEEEECC---CCc-----eeeeeee-CeeeEEEEeeCCC
Q 036314          168 QVEEPQLEGEAISTLVGHTQCVSSVVWPQQETIYSASWDHSVRTWDVE---MGK-----DLSDIFC-GKALNCIDIGGEG  238 (347)
Q Consensus       168 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~dg~v~vwd~~---~~~-----~~~~~~~-~~~~~~~~~~~~~  238 (347)
                                ....+..|..+|    .|+|+++++++.---|++|.+-   .|.     .+..+.. ...+...+|++ +
T Consensus       225 ----------dtnq~~n~~aav----SP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn-~  289 (420)
T KOG2096|consen  225 ----------DTNQSSNYDAAV----SPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSN-S  289 (420)
T ss_pred             ----------ccccccccceee----CCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCC-C
Confidence                      001122222222    3889999999999999999863   332     1222322 34678888865 4


Q ss_pred             CcEEEEecCCCcEEEEeCCC----CCCCCCeEEe----cCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCcccee
Q 036314          239 SALIAAGGSDPILRIWDPRK----PGTSAPVFQF----SSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSV  310 (347)
Q Consensus       239 ~~~la~~~~d~~i~iwd~~~----~~~~~~~~~~----~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~  310 (347)
                      +..+++.+.||++++||+.-    ...+..+...    ....+.-..+..+|.+.  +++.+...+++++..++++....
T Consensus       290 S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~--~lA~s~gs~l~~~~se~g~~~~~  367 (420)
T KOG2096|consen  290 STRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGD--SLAVSFGSDLKVFASEDGKDYPE  367 (420)
T ss_pred             cceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCc--EEEeecCCceEEEEcccCccchh
Confidence            56788999999999999752    1112112211    11222334799999985  45566677899999999877766


Q ss_pred             ec-CCCCeEEEEeec-CCCEEEEccCCceEEEee
Q 036314          311 ID-SHKDKVLCADWW-RGDSVISGGVDSKLCVSS  342 (347)
Q Consensus       311 ~~-~h~~~v~~~~~~-~~~~l~s~s~D~~v~vw~  342 (347)
                      ++ .|.+.|.+++|+ +|+++||+| |+-++|-.
T Consensus       368 ~e~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~  400 (420)
T KOG2096|consen  368 LEDIHSTTISSISYSSDGKYIATCG-DRYVRVIR  400 (420)
T ss_pred             HHHhhcCceeeEEecCCCcEEeeec-ceeeeeec
Confidence            64 689999999997 588899987 77777765

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.92  E-value=7.4e-22  Score=173.55  Aligned_cols=265  Identities=11%  Similarity=0.083  Sum_probs=181.5

Q ss_pred             CEEEEEecCCeEEEEcCC-CeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeee
Q 036314           36 GFILTGCYDNLGRVWKAG-GVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKI  114 (347)
Q Consensus        36 ~~l~sg~~d~~i~iw~~~-~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~  114 (347)
                      .+++|++.|+.+++||.. +.+++.+.+|.. +.+++|+|++.   ..+++++.|+.|++||+.+++.         ...
T Consensus         2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~dg~---~l~~~~~~~~~v~~~d~~~~~~---------~~~   68 (300)
T TIGR03866         2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQR-PRGITLSKDGK---LLYVCASDSDTIQVIDLATGEV---------IGT   68 (300)
T ss_pred             cEEEEecCCCEEEEEECCCCceEEEEECCCC-CCceEECCCCC---EEEEEECCCCeEEEEECCCCcE---------EEe
Confidence            478899999999999974 667777776654 67899988543   2346778899999999876543         223


Q ss_pred             eeccccceEEEEEeCCCCEEE-EeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEE
Q 036314          115 LRGHKASVHSIAAETSGNMVC-SGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVV  193 (347)
Q Consensus       115 ~~~h~~~V~~v~~s~~~~~l~-sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~  193 (347)
                      +..+.. +..++++|+++.++ +++.|+.+++||+.+...                         +..+.. ...+.++.
T Consensus        69 ~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~-------------------------~~~~~~-~~~~~~~~  121 (300)
T TIGR03866        69 LPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIETRKV-------------------------LAEIPV-GVEPEGMA  121 (300)
T ss_pred             ccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeE-------------------------EeEeeC-CCCcceEE
Confidence            333333 46788999998765 456789999999875321                         111111 11235566


Q ss_pred             e-CCCCeEEEEecCC-cEEEEECCCCceeeeeeeCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCC
Q 036314          194 W-PQQETIYSASWDH-SVRTWDVEMGKDLSDIFCGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSH  271 (347)
Q Consensus       194 ~-~~~~~l~s~s~dg-~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h  271 (347)
                      | |++..+++++.++ .+.+||.++++....+........+.+.+++..+++++..++.|++||++....   ...+..+
T Consensus       122 ~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~---~~~~~~~  198 (300)
T TIGR03866       122 VSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKV---IKKITFE  198 (300)
T ss_pred             ECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCccee---eeeeeec
Confidence            6 5777888877765 467789988766555444445567788776655556666799999999975321   2222211


Q ss_pred             -----CC--CeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecCCCCeEEEEeecC-CCEEEEc-cCCceEEEee
Q 036314          272 -----NS--WISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKVLCADWWR-GDSVISG-GVDSKLCVSS  342 (347)
Q Consensus       272 -----~~--~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~l~s~-s~D~~v~vw~  342 (347)
                           ..  ....++|+|++...+++.+.++++.+||+++++....+. +...+.++.|+| |++|+++ +.+++|+||+
T Consensus       199 ~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d  277 (300)
T TIGR03866       199 IPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVID  277 (300)
T ss_pred             ccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEE
Confidence                 11  234688999997655666667789999999877665543 345789999985 6677765 5699999999


Q ss_pred             cc
Q 036314          343 GV  344 (347)
Q Consensus       343 ~~  344 (347)
                      ..
T Consensus       278 ~~  279 (300)
T TIGR03866       278 VA  279 (300)
T ss_pred             CC
Confidence            75

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.92  E-value=2.8e-25  Score=200.32  Aligned_cols=250  Identities=25%  Similarity=0.424  Sum_probs=201.6

Q ss_pred             EEEEEecCCeEEEEcCCCeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeeee
Q 036314           37 FILTGCYDNLGRVWKAGGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILR  116 (347)
Q Consensus        37 ~l~sg~~d~~i~iw~~~~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~  116 (347)
                      +++++..+-.+|+|+..     .+..|...|.++....    ....+++|+.|..+-+|.+....         ++-.|.
T Consensus         6 ~~m~~~~~t~Lr~~~~~-----~~~~hsaav~~lk~~~----s~r~~~~Gg~~~k~~L~~i~kp~---------~i~S~~   67 (825)
T KOG0267|consen    6 FLMKTKRATKLRVWDTR-----EFVAHSAAVGCLKIRK----SSRSLVTGGEDEKVNLWAIGKPN---------AITSLT   67 (825)
T ss_pred             ccceeeeeeccccccch-----hhhhhhhhhceeeeec----cceeeccCCCceeeccccccCCc---------hhheee
Confidence            45566666777888753     4556888888888733    33578999999999999875422         333578


Q ss_pred             ccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEe-C
Q 036314          117 GHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW-P  195 (347)
Q Consensus       117 ~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~  195 (347)
                      +|+.+|.++.|+++..+|++|+.||+||+||++.                         +..++++.+|...+.++.| |
T Consensus        68 ~hespIeSl~f~~~E~LlaagsasgtiK~wDlee-------------------------Ak~vrtLtgh~~~~~sv~f~P  122 (825)
T KOG0267|consen   68 GHESPIESLTFDTSERLLAAGSASGTIKVWDLEE-------------------------AKIVRTLTGHLLNITSVDFHP  122 (825)
T ss_pred             ccCCcceeeecCcchhhhcccccCCceeeeehhh-------------------------hhhhhhhhccccCcceeeecc
Confidence            9999999999999999999999999999999974                         3457789999999999998 5


Q ss_pred             CCCeEEEEecCCcEEEEECCCCceeeeeeeC-eeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCC
Q 036314          196 QQETIYSASWDHSVRTWDVEMGKDLSDIFCG-KALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSW  274 (347)
Q Consensus       196 ~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~  274 (347)
                      -+.+.++++.|+.+++||.+...+.+....+ ..+.++.|.| ++..++.|++|..++|||+..+   .....|..|...
T Consensus       123 ~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP-~Gr~v~~g~ed~tvki~d~~ag---k~~~ef~~~e~~  198 (825)
T KOG0267|consen  123 YGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSP-DGRWVASGGEDNTVKIWDLTAG---KLSKEFKSHEGK  198 (825)
T ss_pred             ceEEeccccccccceehhhhccCceeeecCCcceeEEEeecC-CCceeeccCCcceeeeeccccc---cccccccccccc
Confidence            6788899999999999999865566555432 3567888865 5568999999999999998753   346788899999


Q ss_pred             eeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecCCCCeEEEEeecC-CCEEEEccC
Q 036314          275 ISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKVLCADWWR-GDSVISGGV  334 (347)
Q Consensus       275 v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~l~s~s~  334 (347)
                      +.++.|+|.. .+|++||.|+++++||+++.+.+.........|.|..|.+ +..+.+|-.
T Consensus       199 v~sle~hp~e-~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q  258 (825)
T KOG0267|consen  199 VQSLEFHPLE-VLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQ  258 (825)
T ss_pred             ccccccCchh-hhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCch
Confidence            9999999987 5799999999999999999887777777788999999975 555555443

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=6.5e-23  Score=189.70  Aligned_cols=255  Identities=22%  Similarity=0.321  Sum_probs=196.0

Q ss_pred             CcCCceeeccCC-CCCEEEEEecCCeEEEEcCCC--eEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEecc
Q 036314           22 LHDDWVSAVDGS-NPGFILTGCYDNLGRVWKAGG--VCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFD   98 (347)
Q Consensus        22 ~h~~~v~~~~~~-~~~~l~sg~~d~~i~iw~~~~--~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~   98 (347)
                      +|+...+.+.+. ++.+|.|+|.||.||+|+...  ....++.-+...|.+++.-.      ..+++|+++++|.+|.+.
T Consensus        11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s------~~f~~~s~~~tv~~y~fp   84 (933)
T KOG1274|consen   11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYS------NHFLTGSEQNTVLRYKFP   84 (933)
T ss_pred             hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecc------cceEEeeccceEEEeeCC
Confidence            799999999987 567999999999999997432  22233444777888877532      268999999999999987


Q ss_pred             ccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccc
Q 036314           99 AEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEA  178 (347)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (347)
                      +++.         -..+...+-++++++|+.+|++++.||.|-.|++-++.+.                         ..
T Consensus        85 s~~~---------~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~-------------------------s~  130 (933)
T KOG1274|consen   85 SGEE---------DTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDS-------------------------SQ  130 (933)
T ss_pred             CCCc---------cceeeeeeccceEEEEecCCcEEEeecCceeEEEEecccc-------------------------ch
Confidence            6642         1234456788999999999999999999999999988753                         34


Q ss_pred             cccccCCccceEEEEe-CCCCeEEEEecCCcEEEEECCCCceeeeeee---------CeeeEEEEeeCCCCcEEEEecCC
Q 036314          179 ISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFC---------GKALNCIDIGGEGSALIAAGGSD  248 (347)
Q Consensus       179 ~~~~~~h~~~v~~~~~-~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~la~~~~d  248 (347)
                      .+.+++|..+|.++.| |.++.|++.+.||+|++||+.++.....+..         ......++|+|.++.+ +....|
T Consensus       131 ~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~l-a~~~~d  209 (933)
T KOG1274|consen  131 EKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTL-AVPPVD  209 (933)
T ss_pred             heeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeE-EeeccC
Confidence            5678999999999997 6788999999999999999998876655431         2345668898877755 555679


Q ss_pred             CcEEEEeCCCCCCCCCeEEe--cCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecCCCCeEEEEeecC
Q 036314          249 PILRIWDPRKPGTSAPVFQF--SSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKVLCADWWR  325 (347)
Q Consensus       249 ~~i~iwd~~~~~~~~~~~~~--~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~  325 (347)
                      +.|++|+...   ....+.+  ..+...+..+.|+|.|. +||+++.||.|.|||+++-+   + ......|.|++|.|
T Consensus       210 ~~Vkvy~r~~---we~~f~Lr~~~~ss~~~~~~wsPnG~-YiAAs~~~g~I~vWnv~t~~---~-~~~~~~Vc~~aw~p  280 (933)
T KOG1274|consen  210 NTVKVYSRKG---WELQFKLRDKLSSSKFSDLQWSPNGK-YIAASTLDGQILVWNVDTHE---R-HEFKRAVCCEAWKP  280 (933)
T ss_pred             CeEEEEccCC---ceeheeecccccccceEEEEEcCCCc-EEeeeccCCcEEEEecccch---h-ccccceeEEEecCC
Confidence            9999999753   2223333  33444589999999986 59999999999999999722   1 12246788999964

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.92  E-value=3.1e-23  Score=184.90  Aligned_cols=305  Identities=17%  Similarity=0.249  Sum_probs=203.5

Q ss_pred             CCCcCCCCCcCCceeeccCCCCC-EEEEEecCCeEEEEcCC-CeEEE--EeeccCCceEEEEEeecCCCceEEEEEccCC
Q 036314           14 PQKEEEPSLHDDWVSAVDGSNPG-FILTGCYDNLGRVWKAG-GVCTH--ILEGHCGAVSSVNIIKSDGLKYVTVATASKD   89 (347)
Q Consensus        14 ~~~~~~~~~h~~~v~~~~~~~~~-~l~sg~~d~~i~iw~~~-~~~~~--~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~D   89 (347)
                      ++.+..+..|.+.|-.+..-++. .|++++.|.++|+||+. +.++.  .+.||++.|.+++|++.+.   ..+++|+.|
T Consensus        90 e~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~---~vF~tGgRD  166 (720)
T KOG0321|consen   90 ERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNP---AVFCTGGRD  166 (720)
T ss_pred             hhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCC---cceeeccCC
Confidence            34455688999999999976654 89999999999999985 44543  4889999999999998654   368999999


Q ss_pred             CcEEEEecccccc--c-----------cC-cccc----ceeeeeeccccceEE---EEEeCCCCEEEEeeC-CCcEEEEe
Q 036314           90 QTLRLWKFDAEEL--V-----------NH-PKKI----RSFKILRGHKASVHS---IAAETSGNMVCSGSW-DCTISLWR  147 (347)
Q Consensus        90 g~v~~wd~~~~~~--~-----------~~-~~~~----~~~~~~~~h~~~V~~---v~~s~~~~~l~sgs~-Dg~I~iwd  147 (347)
                      |.|.|||+.-+..  .           .. +...    +.+....+|...|.+   +.+..|...|||+|. |++||+||
T Consensus       167 g~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWD  246 (720)
T KOG0321|consen  167 GEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWD  246 (720)
T ss_pred             CcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEe
Confidence            9999999864331  0           00 0111    111233456666665   556677888998887 99999999


Q ss_pred             cCCCCCCCccceeeeccCCCcccccccccccccc--ccCCc---cceEEEEe-CCCCeEEEEecCCcEEEEECCCCce-e
Q 036314          148 TNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAIST--LVGHT---QCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKD-L  220 (347)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~h~---~~v~~~~~-~~~~~l~s~s~dg~v~vwd~~~~~~-~  220 (347)
                      +.........                   +....  +..|.   -.+.++.. ..|.+|+....|++|.+||+..-.. .
T Consensus       247 LRk~~~~~r~-------------------ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP  307 (720)
T KOG0321|consen  247 LRKNYTAYRQ-------------------EPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISP  307 (720)
T ss_pred             eccccccccc-------------------CCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCc
Confidence            9875432211                   01111  11121   12334443 3467776666699999999976432 1


Q ss_pred             eeeeeCee---eEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcE
Q 036314          221 SDIFCGKA---LNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKV  297 (347)
Q Consensus       221 ~~~~~~~~---~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i  297 (347)
                      .....+..   .+--....+++..+++|+.|...++|.+...+  .+...+.+|.-.|.+++|.|....-+|+++.|-++
T Consensus       308 ~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e--~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~  385 (720)
T KOG0321|consen  308 VAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPE--APPALLLGHTREVTTVRWLPSATTPVATCSDDFRV  385 (720)
T ss_pred             hhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCcc--CChhhhhCcceEEEEEeeccccCCCceeeccCcce
Confidence            11111211   11112223456688999999999999988654  34567789999999999998876679999999999


Q ss_pred             EEEEcCCCcc--------------ceeecCCCCeEEEEeec-CCCEEEEccCCceEEEeecc
Q 036314          298 MLWDLRTAWP--------------LSVIDSHKDKVLCADWW-RGDSVISGGVDSKLCVSSGV  344 (347)
Q Consensus       298 ~lwd~~~~~~--------------~~~~~~h~~~v~~~~~~-~~~~l~s~s~D~~v~vw~~~  344 (347)
                      +||++..+..              ...+.+|.-.+..+.|+ .+.+....  -+..++|+.+
T Consensus       386 kiW~l~~~l~e~~~adk~s~v~~~~~rfk~~~p~~~nv~ss~~~t~~~pR--~~~~r~~ssP  445 (720)
T KOG0321|consen  386 KIWRLSNGLEEIYAADKDSIVYEYSRRFKGHLPQVLNVNSSLRKTYKDPR--EGMNRISSSP  445 (720)
T ss_pred             EEEeccCchhhccccccchhhhhhhhhhhccccccccccccccccccchh--hhccccccCc
Confidence            9999976422              22356777777777775 22222222  4556666655

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.92  E-value=1e-22  Score=186.59  Aligned_cols=291  Identities=19%  Similarity=0.254  Sum_probs=217.1

Q ss_pred             CcC-CceeeccCC-CCC-EEEEEecCCeEEEEcCCCeEE--EEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEe
Q 036314           22 LHD-DWVSAVDGS-NPG-FILTGCYDNLGRVWKAGGVCT--HILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWK   96 (347)
Q Consensus        22 ~h~-~~v~~~~~~-~~~-~l~sg~~d~~i~iw~~~~~~~--~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd   96 (347)
                      -|. +.|++++|. +|. .+|+|+..|.+-+||+.+..+  .....|.+.|..+.|.+..    ..++|++.|+.+++|=
T Consensus       241 k~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~e----pVl~ta~~DnSlk~~v  316 (910)
T KOG1539|consen  241 KQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGE----PVLVTAGADNSLKVWV  316 (910)
T ss_pred             EccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCC----ceEeeccCCCceeEEE
Confidence            365 899999998 554 788999999999999976443  2345888888888887733    2678888888888885


Q ss_pred             cccccc----cc----------------------------------------------C------------c--c--ccc
Q 036314           97 FDAEEL----VN----------------------------------------------H------------P--K--KIR  110 (347)
Q Consensus        97 ~~~~~~----~~----------------------------------------------~------------~--~--~~~  110 (347)
                      .+++..    ++                                              .            .  .  +..
T Consensus       317 fD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p  396 (910)
T KOG1539|consen  317 FDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLP  396 (910)
T ss_pred             eeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCC
Confidence            542211    00                                              0            0  0  000


Q ss_pred             ee--------------------------------------eeee-----ccccceEEEEEeCCCCEEEEeeCCCcEEEEe
Q 036314          111 SF--------------------------------------KILR-----GHKASVHSIAAETSGNMVCSGSWDCTISLWR  147 (347)
Q Consensus       111 ~~--------------------------------------~~~~-----~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd  147 (347)
                      ++                                      .+|.     .-...+++++.++-|++.+-|...|+|-+|+
T Consensus       397 ~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fN  476 (910)
T KOG1539|consen  397 PIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFN  476 (910)
T ss_pred             cceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEE
Confidence            00                                      0111     1236788999999999999999999999999


Q ss_pred             cCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEeC-CCCeEEEEecCCcEEEEECCCCceeeeeeeC
Q 036314          148 TNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWP-QQETIYSASWDHSVRTWDVEMGKDLSDIFCG  226 (347)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~  226 (347)
                      +.++-..++                      ...-..|..+|.+++.. -++.++|++.+|.++.||......+..+..+
T Consensus       477 mQSGi~r~s----------------------f~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~  534 (910)
T KOG1539|consen  477 MQSGIHRKS----------------------FGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLG  534 (910)
T ss_pred             cccCeeecc----------------------cccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccC
Confidence            986522110                      00114588999999974 4567999999999999999888777777766


Q ss_pred             eeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCc
Q 036314          227 KALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAW  306 (347)
Q Consensus       227 ~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~  306 (347)
                      ..+.++..+... .++|.+..|-.|+++|...   .+....|.||.+.|+++.|||||.+ |++++.|++||+||+-++.
T Consensus       535 ~~~~~iv~hr~s-~l~a~~~ddf~I~vvD~~t---~kvvR~f~gh~nritd~~FS~DgrW-lisasmD~tIr~wDlpt~~  609 (910)
T KOG1539|consen  535 SSITGIVYHRVS-DLLAIALDDFSIRVVDVVT---RKVVREFWGHGNRITDMTFSPDGRW-LISASMDSTIRTWDLPTGT  609 (910)
T ss_pred             CCcceeeeeehh-hhhhhhcCceeEEEEEchh---hhhhHHhhccccceeeeEeCCCCcE-EEEeecCCcEEEEeccCcc
Confidence            666666665433 3677888899999999863   2346788899999999999999965 9999999999999999988


Q ss_pred             cceeecCCCCeEEEEeecC-CCEEEEccCC-ceEEEeecc
Q 036314          307 PLSVIDSHKDKVLCADWWR-GDSVISGGVD-SKLCVSSGV  344 (347)
Q Consensus       307 ~~~~~~~h~~~v~~~~~~~-~~~l~s~s~D-~~v~vw~~~  344 (347)
                      .+-.+. -..++..+.|+| |++||++..| .-|++|+--
T Consensus       610 lID~~~-vd~~~~sls~SPngD~LAT~Hvd~~gIylWsNk  648 (910)
T KOG1539|consen  610 LIDGLL-VDSPCTSLSFSPNGDFLATVHVDQNGIYLWSNK  648 (910)
T ss_pred             eeeeEe-cCCcceeeEECCCCCEEEEEEecCceEEEEEch
Confidence            776553 356889999986 8899999988 779999754

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=2.3e-22  Score=165.10  Aligned_cols=286  Identities=20%  Similarity=0.255  Sum_probs=197.0

Q ss_pred             CCCCcCCceeeccCC-CCCEEEEEecCCeEEEEcCC---C--eEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcE
Q 036314           19 EPSLHDDWVSAVDGS-NPGFILTGCYDNLGRVWKAG---G--VCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTL   92 (347)
Q Consensus        19 ~~~~h~~~v~~~~~~-~~~~l~sg~~d~~i~iw~~~---~--~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v   92 (347)
                      +..+|.+-|.++.|. .|..+||+|.|++++|||..   +  .+....+.|.+.|..|.|.+..  =++.+|++|.|+++
T Consensus         8 i~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPE--fGqvvA~cS~Drtv   85 (361)
T KOG2445|consen    8 IDSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPE--FGQVVATCSYDRTV   85 (361)
T ss_pred             cccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCcc--ccceEEEEecCCce
Confidence            356899999999987 58899999999999999952   3  4677899999999999996533  23589999999999


Q ss_pred             EEEeccccccccCccccceeeeeeccccceEEEEEeCC--CCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccc
Q 036314           93 RLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETS--GNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVE  170 (347)
Q Consensus        93 ~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~--~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~  170 (347)
                      +||.=.....-.+...+....++......|++|.|.|.  |..+++++.||++|||+..+.-...               
T Consensus        86 ~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs---------------  150 (361)
T KOG2445|consen   86 SIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLS---------------  150 (361)
T ss_pred             eeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccc---------------
Confidence            99985322222222345566678888899999999886  6789999999999999876542110               


Q ss_pred             ccccccc---ccccccCCccceEEEEeCC----CCeEEEEecC-----CcEEEEECCCCc-e---eeeee-eCeeeEEEE
Q 036314          171 EPQLEGE---AISTLVGHTQCVSSVVWPQ----QETIYSASWD-----HSVRTWDVEMGK-D---LSDIF-CGKALNCID  233 (347)
Q Consensus       171 ~~~~~~~---~~~~~~~h~~~v~~~~~~~----~~~l~s~s~d-----g~v~vwd~~~~~-~---~~~~~-~~~~~~~~~  233 (347)
                      ..++..+   .+.....+.....|+.|..    .++|+.|+.+     +.++||....+. .   +.++. ...++..++
T Consensus       151 ~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~  230 (361)
T KOG2445|consen  151 QWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDIS  230 (361)
T ss_pred             cchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeee
Confidence            0000000   0011122445567788853    2456666555     379999765432 2   22232 245789999


Q ss_pred             eeCCCC---cEEEEecCCCcEEEEeCCCC------------C-----CCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeC
Q 036314          234 IGGEGS---ALIAAGGSDPILRIWDPRKP------------G-----TSAPVFQFSSHNSWISACKWHNKSWFHLISASY  293 (347)
Q Consensus       234 ~~~~~~---~~la~~~~d~~i~iwd~~~~------------~-----~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~  293 (347)
                      |.|+-+   .+||+++.|| |+||.++..            .     +...+..+.+|.+.|..+.|+-.| ..|+|.+.
T Consensus       231 wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtG-tiLsStGd  308 (361)
T KOG2445|consen  231 WAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTG-TILSSTGD  308 (361)
T ss_pred             eccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeee-eEEeecCC
Confidence            987643   4789999999 999997620            0     011234578999999999999877 57999999


Q ss_pred             CCcEEEEEcCCC---ccceeecCCCCeEEEEeec
Q 036314          294 DGKVMLWDLRTA---WPLSVIDSHKDKVLCADWW  324 (347)
Q Consensus       294 D~~i~lwd~~~~---~~~~~~~~h~~~v~~~~~~  324 (347)
                      ||.||+|...-.   ++...+.+ ++.|....|+
T Consensus       309 DG~VRLWkany~n~~kC~sv~~~-e~~~~~~~~~  341 (361)
T KOG2445|consen  309 DGCVRLWKANYNNLWKCTSVLKA-EGSVTKPDFS  341 (361)
T ss_pred             CceeeehhhhhhhhheeeeEEec-cCCCCCcccc
Confidence            999999976532   34444543 2334444443

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.92  E-value=1.7e-23  Score=186.44  Aligned_cols=103  Identities=25%  Similarity=0.372  Sum_probs=89.5

Q ss_pred             EEEEecCCCcEEEEeCCCCCC----CCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecCCCC
Q 036314          241 LIAAGGSDPILRIWDPRKPGT----SAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKD  316 (347)
Q Consensus       241 ~la~~~~d~~i~iwd~~~~~~----~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h~~  316 (347)
                      .+|.+++||.|+||.+...+-    ..+...+..|...|.++.|+|-....|+++++|-+|+|||++++.....+.+|++
T Consensus       642 rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtd  721 (1012)
T KOG1445|consen  642 RLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTD  721 (1012)
T ss_pred             HeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcC
Confidence            478899999999998764332    2345677899999999999997767899999999999999999888888999999


Q ss_pred             eEEEEeecC-CCEEEEccCCceEEEeec
Q 036314          317 KVLCADWWR-GDSVISGGVDSKLCVSSG  343 (347)
Q Consensus       317 ~v~~~~~~~-~~~l~s~s~D~~v~vw~~  343 (347)
                      .|.+++||| |+++|+.+.||+|+|+.-
T Consensus       722 qIf~~AWSpdGr~~AtVcKDg~~rVy~P  749 (1012)
T KOG1445|consen  722 QIFGIAWSPDGRRIATVCKDGTLRVYEP  749 (1012)
T ss_pred             ceeEEEECCCCcceeeeecCceEEEeCC
Confidence            999999985 888999999999999864

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=4.3e-23  Score=176.87  Aligned_cols=237  Identities=18%  Similarity=0.336  Sum_probs=176.8

Q ss_pred             CCEEEEEecCCeEEEEcCC--C---eEE-----------------EEeeccCCceEEEEEeecCCCceEEEEEccCCCcE
Q 036314           35 PGFILTGCYDNLGRVWKAG--G---VCT-----------------HILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTL   92 (347)
Q Consensus        35 ~~~l~sg~~d~~i~iw~~~--~---~~~-----------------~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v   92 (347)
                      |+|+|-|..|..|.|||+.  .   .+.                 ....+|++.|.++.|....   ...|||||.|.+|
T Consensus       192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~---~nVLaSgsaD~TV  268 (463)
T KOG0270|consen  192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNF---RNVLASGSADKTV  268 (463)
T ss_pred             cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhcccc---ceeEEecCCCceE
Confidence            5699999999999999862  1   111                 0123799999999886543   2479999999999


Q ss_pred             EEEeccccccccCccccceeeeeeccccceEEEEEeCCC-CEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCcccc
Q 036314           93 RLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSG-NMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEE  171 (347)
Q Consensus        93 ~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~-~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~  171 (347)
                      ++||+.+++         +..++..|.+.|.++.|+|.. ..|++||+|++|++.|++.....+...             
T Consensus       269 ~lWD~~~g~---------p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~w-------------  326 (463)
T KOG0270|consen  269 KLWDVDTGK---------PKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEW-------------  326 (463)
T ss_pred             EEEEcCCCC---------cceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceE-------------
Confidence            999999876         445677899999999998865 789999999999999998643221111             


Q ss_pred             ccccccccccccCCccceEEEEeC--CCCeEEEEecCCcEEEEECCCC-ceeeeeee-CeeeEEEEeeCCCCcEEEEecC
Q 036314          172 PQLEGEAISTLVGHTQCVSSVVWP--QQETIYSASWDHSVRTWDVEMG-KDLSDIFC-GKALNCIDIGGEGSALIAAGGS  247 (347)
Q Consensus       172 ~~~~~~~~~~~~~h~~~v~~~~~~--~~~~l~s~s~dg~v~vwd~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~la~~~~  247 (347)
                               .   ..+.|-.++|.  ....++++..||+|+-+|+|.. +++.++.. ..++.++++......++++++.
T Consensus       327 ---------k---~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~  394 (463)
T KOG0270|consen  327 ---------K---FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTAST  394 (463)
T ss_pred             ---------E---eccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccc
Confidence                     0   12356777874  2345788899999999999875 66666654 4578999988777789999999


Q ss_pred             CCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccce
Q 036314          248 DPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLS  309 (347)
Q Consensus       248 d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~  309 (347)
                      |+.|++|++.... +.......-.-+...|.++.|+....||.|+..+.++|||+.+..++.
T Consensus       395 d~~Vklw~~~~~~-~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~  455 (463)
T KOG0270|consen  395 DKVVKLWKFDVDS-PKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPVR  455 (463)
T ss_pred             cceEEEEeecCCC-CcccccccccccceeecccCCCcceEEEecCccceEEEeecccChhHH
Confidence            9999999986432 222211111123467788889988889999999999999998875543

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.92  E-value=5.4e-25  Score=198.54  Aligned_cols=233  Identities=21%  Similarity=0.346  Sum_probs=188.8

Q ss_pred             CCCCCcCCceeeccCC-CCCEEEEEecCCeEEEEcCCC-eEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEE
Q 036314           18 EEPSLHDDWVSAVDGS-NPGFILTGCYDNLGRVWKAGG-VCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLW   95 (347)
Q Consensus        18 ~~~~~h~~~v~~~~~~-~~~~l~sg~~d~~i~iw~~~~-~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~w   95 (347)
                      .....|...|.++..- ....+++||.|..+-+|.... .+...|.+|+..|-++.|.+..    ..|++|+.||+||+|
T Consensus        22 ~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E----~LlaagsasgtiK~w   97 (825)
T KOG0267|consen   22 REFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSE----RLLAAGSASGTIKVW   97 (825)
T ss_pred             hhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcch----hhhcccccCCceeee
Confidence            3566789999988864 467899999999999998643 3455699999999999998844    468999999999999


Q ss_pred             eccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCcccccccc
Q 036314           96 KFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLE  175 (347)
Q Consensus        96 d~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (347)
                      |++.++         .+++|.+|...+.+|.|+|.+.++++|+.|+.+++||+...                        
T Consensus        98 DleeAk---------~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~------------------------  144 (825)
T KOG0267|consen   98 DLEEAK---------IVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKK------------------------  144 (825)
T ss_pred             ehhhhh---------hhhhhhccccCcceeeeccceEEeccccccccceehhhhcc------------------------
Confidence            998654         34578999999999999999999999999999999998743                        


Q ss_pred             ccccccccCCccceEEEEe-CCCCeEEEEecCCcEEEEECCCCceeeeeee-CeeeEEEEeeCCCCcEEEEecCCCcEEE
Q 036314          176 GEAISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFC-GKALNCIDIGGEGSALIAAGGSDPILRI  253 (347)
Q Consensus       176 ~~~~~~~~~h~~~v~~~~~-~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~la~~~~d~~i~i  253 (347)
                       .+...+.+|...|..+.| |+|.++++++.|.+++|||+..|+....+.. ...+..+.++|. ..++++|+.|.++++
T Consensus       145 -Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~-e~Lla~Gs~d~tv~f  222 (825)
T KOG0267|consen  145 -GCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPL-EVLLAPGSSDRTVRF  222 (825)
T ss_pred             -CceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCch-hhhhccCCCCceeee
Confidence             245677889999999988 6788999999999999999999988777763 345677788664 457899999999999


Q ss_pred             EeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeC
Q 036314          254 WDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASY  293 (347)
Q Consensus       254 wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~  293 (347)
                      ||++.-   ..+-........|.+.+|+|++.. +++|..
T Consensus       223 ~dletf---e~I~s~~~~~~~v~~~~fn~~~~~-~~~G~q  258 (825)
T KOG0267|consen  223 WDLETF---EVISSGKPETDGVRSLAFNPDGKI-VLSGEQ  258 (825)
T ss_pred             ecccee---EEeeccCCccCCceeeeecCCcee-eecCch
Confidence            999732   223344445667999999999853 555543

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.91  E-value=3e-22  Score=177.51  Aligned_cols=298  Identities=18%  Similarity=0.275  Sum_probs=205.1

Q ss_pred             ccCCCCcCC---CCCcCCceeeccCC-CCCEEEEEecCCeEEEEcC-CCeEEEEeeccCCceEEEEEeecCCCceEEEEE
Q 036314           11 AVAPQKEEE---PSLHDDWVSAVDGS-NPGFILTGCYDNLGRVWKA-GGVCTHILEGHCGAVSSVNIIKSDGLKYVTVAT   85 (347)
Q Consensus        11 ~~~~~~~~~---~~~h~~~v~~~~~~-~~~~l~sg~~d~~i~iw~~-~~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s   85 (347)
                      ++.|+-+..   -.||++.|+++... .|..||+||.||++|||.+ +|.|++++.-- +.|.+|+|.|....  ..||.
T Consensus       384 dLrPFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d-~~I~~vaw~P~~~~--~vLAv  460 (733)
T KOG0650|consen  384 DLRPFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFD-SEIRSVAWNPLSDL--CVLAV  460 (733)
T ss_pred             hcCCCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeec-ceeEEEEecCCCCc--eeEEE
Confidence            344444443   34899999999866 5679999999999999996 57888765422 35999999986543  33444


Q ss_pred             ccCCCcEEEEeccccc---------cccCc----c---------------ccceeeeeeccccceEEEEEeCCCCEEEEe
Q 036314           86 ASKDQTLRLWKFDAEE---------LVNHP----K---------------KIRSFKILRGHKASVHSIAAETSGNMVCSG  137 (347)
Q Consensus        86 ~s~Dg~v~~wd~~~~~---------~~~~~----~---------------~~~~~~~~~~h~~~V~~v~~s~~~~~l~sg  137 (347)
                      +-. ..+-+-+..-++         +....    .               ..+-++..-.|..+|+.+.|+..|.+|++.
T Consensus       461 A~~-~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV  539 (733)
T KOG0650|consen  461 AVG-ECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATV  539 (733)
T ss_pred             Eec-CceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEe
Confidence            433 345555532221         11000    0               001112334588999999999999999987


Q ss_pred             eCC---CcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEeC-CCCeEEEEecCCcEEEEE
Q 036314          138 SWD---CTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWP-QQETIYSASWDHSVRTWD  213 (347)
Q Consensus       138 s~D---g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~l~s~s~dg~v~vwd  213 (347)
                      .-|   ..|.|..+......                      ...+.   -.+.+..+.|. ...+|+.+ .-+.|++||
T Consensus       540 ~~~~~~~~VliHQLSK~~sQ----------------------~PF~k---skG~vq~v~FHPs~p~lfVa-Tq~~vRiYd  593 (733)
T KOG0650|consen  540 MPDSGNKSVLIHQLSKRKSQ----------------------SPFRK---SKGLVQRVKFHPSKPYLFVA-TQRSVRIYD  593 (733)
T ss_pred             ccCCCcceEEEEeccccccc----------------------Cchhh---cCCceeEEEecCCCceEEEE-eccceEEEe
Confidence            554   45777766532110                      01111   12235556664 44455544 466899999


Q ss_pred             CCCCceeeeeeeC-eeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEe
Q 036314          214 VEMGKDLSDIFCG-KALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISAS  292 (347)
Q Consensus       214 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s  292 (347)
                      +.....++.+..+ .-+..+++++.+.++ +.|+.|+.+..||+....  ++.+++..|...+++|+|++.=+ ++++|+
T Consensus       594 L~kqelvKkL~tg~kwiS~msihp~GDnl-i~gs~d~k~~WfDldlss--kPyk~lr~H~~avr~Va~H~ryP-Lfas~s  669 (733)
T KOG0650|consen  594 LSKQELVKKLLTGSKWISSMSIHPNGDNL-ILGSYDKKMCWFDLDLSS--KPYKTLRLHEKAVRSVAFHKRYP-LFASGS  669 (733)
T ss_pred             hhHHHHHHHHhcCCeeeeeeeecCCCCeE-EEecCCCeeEEEEcccCc--chhHHhhhhhhhhhhhhhccccc-eeeeec
Confidence            9887777766544 456788888876655 568899999999997543  45677888999999999998764 799999


Q ss_pred             CCCcEEEE------EcCCC---ccceeecCCCCe----EEEEeecCCC-EEEEccCCceEEEee
Q 036314          293 YDGKVMLW------DLRTA---WPLSVIDSHKDK----VLCADWWRGD-SVISGGVDSKLCVSS  342 (347)
Q Consensus       293 ~D~~i~lw------d~~~~---~~~~~~~~h~~~----v~~~~~~~~~-~l~s~s~D~~v~vw~  342 (347)
                      .||++.|+      |+-.+   .+++.+.+|.-.    |+.+.|+|.+ +|.|++.||+|++|.
T Consensus       670 dDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlfT  733 (733)
T KOG0650|consen  670 DDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLFT  733 (733)
T ss_pred             CCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEeeC
Confidence            99999998      33222   346788999866    8888999855 899999999999984

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.91  E-value=3.5e-23  Score=182.29  Aligned_cols=260  Identities=21%  Similarity=0.237  Sum_probs=184.5

Q ss_pred             EeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEee
Q 036314           59 ILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGS  138 (347)
Q Consensus        59 ~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs  138 (347)
                      ++..|...+.++.|.+..+    .|++++.||++++|.++.. ........+++.+|++|.++|.|+++++++..+++|+
T Consensus       289 tl~s~~d~ir~l~~~~sep----~lit~sed~~lk~WnLqk~-~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg  363 (577)
T KOG0642|consen  289 TLRSHDDCIRALAFHPSEP----VLITASEDGTLKLWNLQKA-KKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGG  363 (577)
T ss_pred             eeecchhhhhhhhcCCCCC----eEEEeccccchhhhhhccc-CCccccceeeeEEEecccCceEEEEecCCceEEEeec
Confidence            5667888899999887554    5899999999999999431 1122345678889999999999999999999999999


Q ss_pred             CCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEeC-CCCeEEEEecCCcEEEEECCCC
Q 036314          139 WDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWP-QQETIYSASWDHSVRTWDVEMG  217 (347)
Q Consensus       139 ~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~l~s~s~dg~v~vwd~~~~  217 (347)
                      -||+|+.|++.....               ..+..-.......+.||+++|+.++++ ...+|++++.||++++|+....
T Consensus       364 ~Dg~I~~w~~p~n~d---------------p~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~  428 (577)
T KOG0642|consen  364 IDGTIRCWNLPPNQD---------------PDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEE  428 (577)
T ss_pred             cCceeeeeccCCCCC---------------cccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCc
Confidence            999999998762110               011111112345788999999999985 4567999999999999997655


Q ss_pred             ceeeeee---eCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecC-------CCCCeeEEEeCCCCCeE
Q 036314          218 KDLSDIF---CGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSS-------HNSWISACKWHNKSWFH  287 (347)
Q Consensus       218 ~~~~~~~---~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~-------h~~~v~~v~~s~~~~~~  287 (347)
                      .. ..+.   .......+++......+.++   +.....+++...........+..       -...+..+.++|..+ +
T Consensus       429 ~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~---s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~-~  503 (577)
T KOG0642|consen  429 SP-CTFGEPKEHGYPLSVDRTSSRPAHSLA---SFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTAD-I  503 (577)
T ss_pred             Cc-cccCCccccCCcceEeeccchhHhhhh---hcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCC-e
Confidence            44 2221   12233455553322222222   23333333322111111111111       112466788888875 6


Q ss_pred             EEEEeCCCcEEEEEcCCCccceeecCCCCeEEEEeec-CCCEEEEccCCceEEEeec
Q 036314          288 LISASYDGKVMLWDLRTAWPLSVIDSHKDKVLCADWW-RGDSVISGGVDSKLCVSSG  343 (347)
Q Consensus       288 l~s~s~D~~i~lwd~~~~~~~~~~~~h~~~v~~~~~~-~~~~l~s~s~D~~v~vw~~  343 (347)
                      ..++..|+.|+++|..++.++.....|...|.++++- +|-+|++++.|+.+++|.-
T Consensus       504 ~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kl  560 (577)
T KOG0642|consen  504 TFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKL  560 (577)
T ss_pred             eEecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhc
Confidence            8999999999999999999999999999999999996 5779999999999999986

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.90  E-value=2.3e-23  Score=196.90  Aligned_cols=252  Identities=15%  Similarity=0.235  Sum_probs=198.5

Q ss_pred             CceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCC-EEEEeeCCCcE
Q 036314           65 GAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGN-MVCSGSWDCTI  143 (347)
Q Consensus        65 ~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~-~l~sgs~Dg~I  143 (347)
                      ...+.++|.+.+....-.||.|.+||.|-+||...-   ........+.+...|+++|..+.|++.+. ++|||+.||.|
T Consensus        65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~---~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI  141 (1049)
T KOG0307|consen   65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASI---IANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEI  141 (1049)
T ss_pred             ccceeeeecccCCCccceeeccccCCceEEecchhh---ccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcE
Confidence            457889998755432236899999999999997642   01122344556778999999999999875 99999999999


Q ss_pred             EEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEeCC--CCeEEEEecCCcEEEEECCCCceee
Q 036314          144 SLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWPQ--QETIYSASWDHSVRTWDVEMGKDLS  221 (347)
Q Consensus       144 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~  221 (347)
                      .|||+...+.....                  +     -....+.|.+++|..  ...|++++.+|.+.|||++..+.+.
T Consensus       142 ~iWDlnn~~tP~~~------------------~-----~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii  198 (1049)
T KOG0307|consen  142 LIWDLNKPETPFTP------------------G-----SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPII  198 (1049)
T ss_pred             EEeccCCcCCCCCC------------------C-----CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCccc
Confidence            99999864321100                  0     011345788999964  4568999999999999999887776


Q ss_pred             eeeeCe---eeEEEEeeCCCCcEEEEecCC---CcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCC
Q 036314          222 DIFCGK---ALNCIDIGGEGSALIAAGGSD---PILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDG  295 (347)
Q Consensus       222 ~~~~~~---~~~~~~~~~~~~~~la~~~~d---~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~  295 (347)
                      .+....   .+..+.|+|++...++++++|   -.|.+||+|...  .+++.+.+|...|.++.|++.+..+|+|++.|+
T Consensus       199 ~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~as--sP~k~~~~H~~GilslsWc~~D~~lllSsgkD~  276 (1049)
T KOG0307|consen  199 KLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFAS--SPLKILEGHQRGILSLSWCPQDPRLLLSSGKDN  276 (1049)
T ss_pred             ccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccC--CchhhhcccccceeeeccCCCCchhhhcccCCC
Confidence            665433   366899999888777777665   489999999643  457788899999999999999988999999999


Q ss_pred             cEEEEEcCCCccceeecCCCCeEEEEeecC--CCEEEEccCCceEEEeecc
Q 036314          296 KVMLWDLRTAWPLSVIDSHKDKVLCADWWR--GDSVISGGVDSKLCVSSGV  344 (347)
Q Consensus       296 ~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~--~~~l~s~s~D~~v~vw~~~  344 (347)
                      +|.+|+.++++.+..+-...+-+..+.|.|  -..|+.++.||.|.|++.-
T Consensus       277 ~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~  327 (1049)
T KOG0307|consen  277 RIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQ  327 (1049)
T ss_pred             CeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeee
Confidence            999999999999998877677889999975  4479999999999998753

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.90  E-value=1.3e-22  Score=170.65  Aligned_cols=218  Identities=19%  Similarity=0.313  Sum_probs=166.8

Q ss_pred             eeccccceEEEEEeCCC--CEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEE
Q 036314          115 LRGHKASVHSIAAETSG--NMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSV  192 (347)
Q Consensus       115 ~~~h~~~V~~v~~s~~~--~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~  192 (347)
                      ..+|.+.++.+..++-+  .+.++=+..|.|+||++......-.         ............++.++.+|...=+++
T Consensus       147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~---------~~~~~~~~s~~~Pl~t~~ghk~EGy~L  217 (440)
T KOG0302|consen  147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALS---------EPGLEVKDSEFRPLFTFNGHKGEGYGL  217 (440)
T ss_pred             ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhc---------CccccccccccCceEEecccCccceee
Confidence            34688888888766654  4666678899999999864311000         000111112345677888999888999


Q ss_pred             EeCC--CCeEEEEecCCcEEEEECCCCceeeee----eeCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeE
Q 036314          193 VWPQ--QETIYSASWDHSVRTWDVEMGKDLSDI----FCGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVF  266 (347)
Q Consensus       193 ~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~----~~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~  266 (347)
                      .|++  ...|+||..-+.|++|...++.....-    .+...+..+.++|....+||+|+.|++|+|||+|..... +-.
T Consensus       218 dWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~-~~~  296 (440)
T KOG0302|consen  218 DWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKK-AAV  296 (440)
T ss_pred             ecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCcc-cee
Confidence            9965  345888888889999998887643221    133467889999988889999999999999999975333 333


Q ss_pred             EecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCC---CccceeecCCCCeEEEEeecC--CCEEEEccCCceEEEe
Q 036314          267 QFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRT---AWPLSVIDSHKDKVLCADWWR--GDSVISGGVDSKLCVS  341 (347)
Q Consensus       267 ~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~---~~~~~~~~~h~~~v~~~~~~~--~~~l~s~s~D~~v~vw  341 (347)
                      ....|.+-|+-+.|+.+-+ +||+|+.||+++|||+|.   ++++++|..|+.+|+++.|+|  ...|+++|.|..|.||
T Consensus       297 ~~kAh~sDVNVISWnr~~~-lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiW  375 (440)
T KOG0302|consen  297 STKAHNSDVNVISWNRREP-LLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIW  375 (440)
T ss_pred             EeeccCCceeeEEccCCcc-eeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEE
Confidence            4488999999999998876 899999999999999986   467889999999999999986  5578999999999999


Q ss_pred             ec
Q 036314          342 SG  343 (347)
Q Consensus       342 ~~  343 (347)
                      +.
T Consensus       376 Dl  377 (440)
T KOG0302|consen  376 DL  377 (440)
T ss_pred             Ee
Confidence            85

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=9.1e-21  Score=170.36  Aligned_cols=275  Identities=19%  Similarity=0.244  Sum_probs=210.7

Q ss_pred             CCceeeccCC-CCCEEEEEecCCeEEEEcCCCe--EEEEeeccC-CceEEEEEeecCCCceEEEEEccCCCcEEEEeccc
Q 036314           24 DDWVSAVDGS-NPGFILTGCYDNLGRVWKAGGV--CTHILEGHC-GAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDA   99 (347)
Q Consensus        24 ~~~v~~~~~~-~~~~l~sg~~d~~i~iw~~~~~--~~~~l~~h~-~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~   99 (347)
                      ...|++++++ ..+.||.+=.||.|-+|++...  +...+.+++ ..|.+++|.+.+     .|.|.+.+|+|.-||+.+
T Consensus        25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~-----RLFS~g~sg~i~EwDl~~   99 (691)
T KOG2048|consen   25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGG-----RLFSSGLSGSITEWDLHT   99 (691)
T ss_pred             ccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCC-----eEEeecCCceEEEEeccc
Confidence            4679999998 5678999999999999998643  445677776 578899998532     589999999999999987


Q ss_pred             cccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCcccccccccccc
Q 036314          100 EELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAI  179 (347)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (347)
                      .+         +...+....++|.+++.+|.+..++.|+.||.+..+++..+..                       +.-
T Consensus       100 lk---------~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I-----------------------~~~  147 (691)
T KOG2048|consen  100 LK---------QKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKI-----------------------TYK  147 (691)
T ss_pred             Cc---------eeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceE-----------------------EEE
Confidence            54         3445566788999999999999999999999777776654311                       111


Q ss_pred             ccccCCccceEEEEeC-CCCeEEEEecCCcEEEEECCCCceeeee--e---eCe----eeEEEEeeCCCCcEEEEecCCC
Q 036314          180 STLVGHTQCVSSVVWP-QQETIYSASWDHSVRTWDVEMGKDLSDI--F---CGK----ALNCIDIGGEGSALIAAGGSDP  249 (347)
Q Consensus       180 ~~~~~h~~~v~~~~~~-~~~~l~s~s~dg~v~vwd~~~~~~~~~~--~---~~~----~~~~~~~~~~~~~~la~~~~d~  249 (347)
                      +.+.-.++.+.++.|. ++..|++|+.||.|++||+..+..++-.  +   ..+    .+..+.+-.+  ..+++|..-|
T Consensus       148 r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd--~tI~sgDS~G  225 (691)
T KOG2048|consen  148 RSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD--STIASGDSAG  225 (691)
T ss_pred             eecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec--CcEEEecCCc
Confidence            2334456788999995 5666999999999999999988776511  1   111    3455555443  3789999999


Q ss_pred             cEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCcc----ceeecCCCCeEEEEeecC
Q 036314          250 ILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWP----LSVIDSHKDKVLCADWWR  325 (347)
Q Consensus       250 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~----~~~~~~h~~~v~~~~~~~  325 (347)
                      +|++||....   ..+..+..|..-|.+++.++++. ++.+++.|+.|..+...++..    ......|...|++++..+
T Consensus       226 ~V~FWd~~~g---TLiqS~~~h~adVl~Lav~~~~d-~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~  301 (691)
T KOG2048|consen  226 TVTFWDSIFG---TLIQSHSCHDADVLALAVADNED-RVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIE  301 (691)
T ss_pred             eEEEEcccCc---chhhhhhhhhcceeEEEEcCCCC-eEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeec
Confidence            9999997643   23567778999999999998875 599999999999998877633    223467888999999864


Q ss_pred             CCEEEEccCCceEEEee
Q 036314          326 GDSVISGGVDSKLCVSS  342 (347)
Q Consensus       326 ~~~l~s~s~D~~v~vw~  342 (347)
                      . .+.+|+.|.++.+-.
T Consensus       302 ~-~l~sgG~d~~l~i~~  317 (691)
T KOG2048|consen  302 N-ALISGGRDFTLAICS  317 (691)
T ss_pred             c-eEEecceeeEEEEcc
Confidence            4 899999999987754

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.90  E-value=4.6e-21  Score=156.70  Aligned_cols=283  Identities=20%  Similarity=0.270  Sum_probs=194.1

Q ss_pred             CCCcCCceeeccCC--CCCEEEEEecCCeEEEEcCCC-------------eEE---EEeeccCCceEEEEEeecCCCceE
Q 036314           20 PSLHDDWVSAVDGS--NPGFILTGCYDNLGRVWKAGG-------------VCT---HILEGHCGAVSSVNIIKSDGLKYV   81 (347)
Q Consensus        20 ~~~h~~~v~~~~~~--~~~~l~sg~~d~~i~iw~~~~-------------~~~---~~l~~h~~~V~~v~~~~~~~~~~~   81 (347)
                      ...|.+.|+++...  .++|+++|+.||.|.+||+..             .|.   ..-.+|.-.|.++.|.|-+.   -
T Consensus        39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~Dt---G  115 (397)
T KOG4283|consen   39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDT---G  115 (397)
T ss_pred             eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecC---c
Confidence            45788999998854  578999999999999999732             121   11236778899999998543   2


Q ss_pred             EEEEccCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCC---CCEEEEeeCCCcEEEEecCCCCCCCccc
Q 036314           82 TVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETS---GNMVCSGSWDCTISLWRTNDSDAAGNQV  158 (347)
Q Consensus        82 ~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~---~~~l~sgs~Dg~I~iwd~~~~~~~~~~~  158 (347)
                      ++.++|.|.++|+||.++.+..         ..|. -.+.|.+-+++|=   -.++|+|..|-.|++-|+.++       
T Consensus       116 mFtssSFDhtlKVWDtnTlQ~a---------~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SG-------  178 (397)
T KOG4283|consen  116 MFTSSSFDHTLKVWDTNTLQEA---------VDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASG-------  178 (397)
T ss_pred             eeecccccceEEEeecccceee---------EEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCC-------
Confidence            6789999999999998765422         1221 2344555455442   357889999999999999864       


Q ss_pred             eeeeccCCCccccccccccccccccCCccceEEEEeC-CCCe-EEEEecCCcEEEEECCCC-ceeeeee-----------
Q 036314          159 SIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWP-QQET-IYSASWDHSVRTWDVEMG-KDLSDIF-----------  224 (347)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~-l~s~s~dg~v~vwd~~~~-~~~~~~~-----------  224 (347)
                                        .+..++.||.+.|.++.|+ ..++ |++|+.||.|++||++.. .+...+.           
T Consensus       179 ------------------s~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~  240 (397)
T KOG4283|consen  179 ------------------SFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILK  240 (397)
T ss_pred             ------------------cceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCcccc
Confidence                              3445789999999999995 4454 799999999999999754 2222221           


Q ss_pred             ----eCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCe---eEEEeCCCCCeEEEEEeCCCcE
Q 036314          225 ----CGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWI---SACKWHNKSWFHLISASYDGKV  297 (347)
Q Consensus       225 ----~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v---~~v~~s~~~~~~l~s~s~D~~i  297 (347)
                          +...++.+++.+++ ..+++.+.|..+++|+..++......+--..|.+.+   .-+. +-+.. .++---.|+.+
T Consensus       241 ~n~ah~gkvngla~tSd~-~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~-~~~s~-vfv~~p~~~~l  317 (397)
T KOG4283|consen  241 TNTAHYGKVNGLAWTSDA-RYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQ-SMDSD-VFVLFPNDGSL  317 (397)
T ss_pred             ccccccceeeeeeecccc-hhhhhccCccceEEeecccCcccccccccccccccccceEEEe-ecccc-eEEEEecCCeE
Confidence                12246678886654 467888899999999987543211111111122211   0011 11111 13333456888


Q ss_pred             EEEEcCCCccceeecCCCCeEEEEeecC-CCEEEEccCCceEEEeec
Q 036314          298 MLWDLRTAWPLSVIDSHKDKVLCADWWR-GDSVISGGVDSKLCVSSG  343 (347)
Q Consensus       298 ~lwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~l~s~s~D~~v~vw~~  343 (347)
                      .++.+-.+..+..+.+|-..+.|..|-+ =+..-+++.|++|.-|.-
T Consensus       318 all~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p  364 (397)
T KOG4283|consen  318 ALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTGDMNGNIYMWSP  364 (397)
T ss_pred             EEEEccCceEEEeeecccceeeEEeecCchhhhhccccCCccccccc
Confidence            8999888888888999988888888854 335788999999998864

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=3.9e-21  Score=165.65  Aligned_cols=288  Identities=12%  Similarity=0.192  Sum_probs=210.8

Q ss_pred             CCCCCcCCceeeccCCCC-CEEEEEecCCeEEEEcCCCe---EEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEE
Q 036314           18 EEPSLHDDWVSAVDGSNP-GFILTGCYDNLGRVWKAGGV---CTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLR   93 (347)
Q Consensus        18 ~~~~~h~~~v~~~~~~~~-~~l~sg~~d~~i~iw~~~~~---~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~   93 (347)
                      |....-...|+++.|.+. .+|+++|.|+++|||.+.|+   .++.+.--.-+|.+..|.|.+.   ..+++++.-.-+.
T Consensus       207 Na~~ps~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~---~~i~~s~rrky~y  283 (514)
T KOG2055|consen  207 NAAHPSHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGH---SVIFTSGRRKYLY  283 (514)
T ss_pred             ccCCcCcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCc---eEEEecccceEEE
Confidence            344455688999999864 58999999999999998764   3455554556788889988543   2688999999999


Q ss_pred             EEeccccccccCccccceeeeeeccc-cceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccc
Q 036314           94 LWKFDAEELVNHPKKIRSFKILRGHK-ASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEP  172 (347)
Q Consensus        94 ~wd~~~~~~~~~~~~~~~~~~~~~h~-~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  172 (347)
                      .||+.+.+..       .+..+.++. ..+.....++++++|+..+..|-|.|-...+.+.                   
T Consensus       284 syDle~ak~~-------k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~el-------------------  337 (514)
T KOG2055|consen  284 SYDLETAKVT-------KLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKEL-------------------  337 (514)
T ss_pred             Eeeccccccc-------cccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhh-------------------
Confidence            9999876542       233344554 3456667899999999999999999986554321                   


Q ss_pred             cccccccccccCCccceEEEEe-CCCCeEEEEecCCcEEEEECCCCceeeeeeeCeee--EEEEeeCCCCcEEEEecCCC
Q 036314          173 QLEGEAISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKAL--NCIDIGGEGSALIAAGGSDP  249 (347)
Q Consensus       173 ~~~~~~~~~~~~h~~~v~~~~~-~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~la~~~~d~  249 (347)
                            +.+++ -.+.|..+.| ++++.|+.++.+|.|.+||++...+++.+.....+  +.++.+ .++.++|+|+..|
T Consensus       338 ------i~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S-~ng~ylA~GS~~G  409 (514)
T KOG2055|consen  338 ------ITSFK-IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCIS-LNGSYLATGSDSG  409 (514)
T ss_pred             ------hheee-eccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeec-CCCceEEeccCcc
Confidence                  22222 2345777777 57888988899999999999999888877655444  334443 3456999999999


Q ss_pred             cEEEEeCCC---CCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEe--CCCcEEEEEcCCCccceee---cCCCCeEEEE
Q 036314          250 ILRIWDPRK---PGTSAPVFQFSSHNSWISACKWHNKSWFHLISAS--YDGKVMLWDLRTAWPLSVI---DSHKDKVLCA  321 (347)
Q Consensus       250 ~i~iwd~~~---~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s--~D~~i~lwd~~~~~~~~~~---~~h~~~v~~~  321 (347)
                      .|.|||...   ...++|++++..-...|+++.|+|+.. +||-+|  .+..+||--+-.......|   ...-+.|+||
T Consensus       410 iVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~q-iLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~  488 (514)
T KOG2055|consen  410 IVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQ-ILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCM  488 (514)
T ss_pred             eEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchh-hhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEE
Confidence            999999542   345677888887888899999999985 566666  4667887665432111111   2234679999


Q ss_pred             eecC-CCEEEEccCCceEEEeec
Q 036314          322 DWWR-GDSVISGGVDSKLCVSSG  343 (347)
Q Consensus       322 ~~~~-~~~l~s~s~D~~v~vw~~  343 (347)
                      +|+| +.+||.|..+|.|.+|..
T Consensus       489 aFSP~sG~lAvGNe~grv~l~kL  511 (514)
T KOG2055|consen  489 AFSPNSGYLAVGNEAGRVHLFKL  511 (514)
T ss_pred             EecCCCceEEeecCCCceeeEee
Confidence            9998 779999999999999964

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.89  E-value=3.8e-20  Score=161.27  Aligned_cols=285  Identities=20%  Similarity=0.264  Sum_probs=200.2

Q ss_pred             CCceeeccCCCCCEEEEEecCCeEEEEcCCC-eEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEecccccc
Q 036314           24 DDWVSAVDGSNPGFILTGCYDNLGRVWKAGG-VCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEEL  102 (347)
Q Consensus        24 ~~~v~~~~~~~~~~l~sg~~d~~i~iw~~~~-~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~  102 (347)
                      +..|.++.|..++-++||..+|.|.||+..+ ...+....|.+.|.++....++     .|+||+.|..|..||-.-.+.
T Consensus       246 kk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~G-----tllSGgKDRki~~Wd~~y~k~  320 (626)
T KOG2106|consen  246 KKFVLCVTFLENGDVITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDG-----TLLSGGKDRKIILWDDNYRKL  320 (626)
T ss_pred             ceEEEEEEEcCCCCEEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCc-----cEeecCccceEEecccccccc
Confidence            3789999999777899999999999999754 3444445999999999887743     478899999999999221111


Q ss_pred             --ccCc---cccce--------------------------eeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCC
Q 036314          103 --VNHP---KKIRS--------------------------FKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDS  151 (347)
Q Consensus       103 --~~~~---~~~~~--------------------------~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~  151 (347)
                        ...|   ...+.                          ..+..+|.+....++.+|+.+++++++.|+.+++|+  +.
T Consensus       321 r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~  398 (626)
T KOG2106|consen  321 RETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DH  398 (626)
T ss_pred             ccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CC
Confidence              0001   01100                          113468999999999999999999999999999998  21


Q ss_pred             CCCCccceeeeccCCCccccccccccccccccCCccceEEEEeCCCCeEEEEecCCcEEEEECCCCceeeeeeeCeeeEE
Q 036314          152 DAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWPQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNC  231 (347)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~  231 (347)
                      ...     .                    + +--..+..++.|.+...++.|...|..-+.|.++...+..-...+++++
T Consensus       399 k~~-----w--------------------t-~~~~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~  452 (626)
T KOG2106|consen  399 KLE-----W--------------------T-KIIEDPAECADFHPSGVVAVGTATGRWFVLDTETQDLVTIHTDNEQLSV  452 (626)
T ss_pred             cee-----E--------------------E-EEecCceeEeeccCcceEEEeeccceEEEEecccceeEEEEecCCceEE
Confidence            110     0                    0 0012355677775444999999999999999988544433334678899


Q ss_pred             EEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEE-----------
Q 036314          232 IDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLW-----------  300 (347)
Q Consensus       232 ~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lw-----------  300 (347)
                      +.++|+ +.++|.|+.|+.|+||.+...+... ...-..|.++|..+.|++|+.+ |.+-|.|-.|..|           
T Consensus       453 v~ysp~-G~~lAvgs~d~~iyiy~Vs~~g~~y-~r~~k~~gs~ithLDwS~Ds~~-~~~~S~d~eiLyW~~~~~~~~ts~  529 (626)
T KOG2106|consen  453 VRYSPD-GAFLAVGSHDNHIYIYRVSANGRKY-SRVGKCSGSPITHLDWSSDSQF-LVSNSGDYEILYWKPSECKQITSV  529 (626)
T ss_pred             EEEcCC-CCEEEEecCCCeEEEEEECCCCcEE-EEeeeecCceeEEeeecCCCce-EEeccCceEEEEEccccCccccee
Confidence            999765 5789999999999999887544321 1122234478888999988743 5555555555555           


Q ss_pred             -------------------------------------------------EcCC---CccceeecCCCCeEEEEeec-CCC
Q 036314          301 -------------------------------------------------DLRT---AWPLSVIDSHKDKVLCADWW-RGD  327 (347)
Q Consensus       301 -------------------------------------------------d~~~---~~~~~~~~~h~~~v~~~~~~-~~~  327 (347)
                                                                       ..--   ..+-..+.+|...|.+|+|. .+.
T Consensus       530 kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~  609 (626)
T KOG2106|consen  530 KDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDS  609 (626)
T ss_pred             cceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCc
Confidence                                                             3210   01123456899999999996 566


Q ss_pred             EEEEccCCceEEEeecc
Q 036314          328 SVISGGVDSKLCVSSGV  344 (347)
Q Consensus       328 ~l~s~s~D~~v~vw~~~  344 (347)
                      .|++.+.|..|..|+.+
T Consensus       610 ~li~tg~D~Si~qW~lv  626 (626)
T KOG2106|consen  610 HLISTGKDTSIMQWRLV  626 (626)
T ss_pred             eEEecCCCceEEEEEeC
Confidence            77777899999999853

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.89  E-value=8.7e-21  Score=174.04  Aligned_cols=308  Identities=13%  Similarity=0.183  Sum_probs=204.6

Q ss_pred             CCCcCCceeeccCCCC-CEEEEEecCCeEEEEcCC-CeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEec
Q 036314           20 PSLHDDWVSAVDGSNP-GFILTGCYDNLGRVWKAG-GVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKF   97 (347)
Q Consensus        20 ~~~h~~~v~~~~~~~~-~~l~sg~~d~~i~iw~~~-~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~   97 (347)
                      ..++...|+++..++- +.+|-|..+|+|.|+|+. ++.+..|+..-+.|++++|..++..   .|++|+..|.+.+||+
T Consensus       198 f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p---~las~~~~G~m~~wDL  274 (910)
T KOG1539|consen  198 FQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNP---LLASGRSNGDMAFWDL  274 (910)
T ss_pred             ecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCe---eEEeccCCceEEEEEc
Confidence            3467788999987753 689999999999999986 6677778765799999999876553   7899999999999999


Q ss_pred             cccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccc-cccc--
Q 036314           98 DAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVE-EPQL--  174 (347)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~--  174 (347)
                      +..++.        ..+...|.+.|....|-+....+++++.|...++|-.++++-..+.  ...+.+...+. .-.+  
T Consensus       275 e~kkl~--------~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~--LR~R~GHs~Pp~~irfy~  344 (910)
T KOG1539|consen  275 EKKKLI--------NVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRL--LRSRGGHSAPPSCIRFYG  344 (910)
T ss_pred             CCCeee--------eeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchh--eeeccCCCCCchheeeec
Confidence            865432        1234479899999999999999999999999999955433221111  11111111000 0000  


Q ss_pred             -----------cc---------cccccccCC--c-----------------cceEEEEeCC------CCeEEEEecCCcE
Q 036314          175 -----------EG---------EAISTLVGH--T-----------------QCVSSVVWPQ------QETIYSASWDHSV  209 (347)
Q Consensus       175 -----------~~---------~~~~~~~~h--~-----------------~~v~~~~~~~------~~~l~s~s~dg~v  209 (347)
                                 ++         .....-.++  .                 .+|..+++..      .+.++..-.+..+
T Consensus       345 ~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~  424 (910)
T KOG1539|consen  345 SQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSA  424 (910)
T ss_pred             cCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceE
Confidence                       00         000000011  0                 1233333321      1223333334456


Q ss_pred             EEEECCCCcee-eeeeeC------eeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEe---cCCCCCeeEEE
Q 036314          210 RTWDVEMGKDL-SDIFCG------KALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQF---SSHNSWISACK  279 (347)
Q Consensus       210 ~vwd~~~~~~~-~~~~~~------~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~---~~h~~~v~~v~  279 (347)
                      +.|+.+....- ..+...      ..+.+++++.- +++...|...|.|.+|++..+-   ....+   ..|...|..++
T Consensus       425 ~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~C-GNF~~IG~S~G~Id~fNmQSGi---~r~sf~~~~ah~~~V~gla  500 (910)
T KOG1539|consen  425 YTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFC-GNFVFIGYSKGTIDRFNMQSGI---HRKSFGDSPAHKGEVTGLA  500 (910)
T ss_pred             EEEeccCcccccEEecCccccccCcceEEEEEecc-CceEEEeccCCeEEEEEcccCe---eecccccCccccCceeEEE
Confidence            67776543321 111111      23445555444 3577788889999999997532   23344   57999999999


Q ss_pred             eCCCCCeEEEEEeCCCcEEEEEcCCCcc-----------------------------------------ceeecCCCCeE
Q 036314          280 WHNKSWFHLISASYDGKVMLWDLRTAWP-----------------------------------------LSVIDSHKDKV  318 (347)
Q Consensus       280 ~s~~~~~~l~s~s~D~~i~lwd~~~~~~-----------------------------------------~~~~~~h~~~v  318 (347)
                      ...-+ +.++|++.||.++.||..+...                                         +..|.||.+.|
T Consensus       501 ~D~~n-~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nri  579 (910)
T KOG1539|consen  501 VDGTN-RLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRI  579 (910)
T ss_pred             ecCCC-ceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccce
Confidence            97766 4699999999999999876431                                         12356899999


Q ss_pred             EEEeecC-CCEEEEccCCceEEEeeccc
Q 036314          319 LCADWWR-GDSVISGGVDSKLCVSSGVS  345 (347)
Q Consensus       319 ~~~~~~~-~~~l~s~s~D~~v~vw~~~~  345 (347)
                      +.++||| |++|++++.|++|++|+.++
T Consensus       580 td~~FS~DgrWlisasmD~tIr~wDlpt  607 (910)
T KOG1539|consen  580 TDMTFSPDGRWLISASMDSTIRTWDLPT  607 (910)
T ss_pred             eeeEeCCCCcEEEEeecCCcEEEEeccC
Confidence            9999985 78899999999999999885

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.88  E-value=8.5e-22  Score=163.14  Aligned_cols=255  Identities=22%  Similarity=0.365  Sum_probs=172.8

Q ss_pred             CEEEEEecCCeEEEEcC-CCeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeee
Q 036314           36 GFILTGCYDNLGRVWKA-GGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKI  114 (347)
Q Consensus        36 ~~l~sg~~d~~i~iw~~-~~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~  114 (347)
                      -++|.||.-|.||+-|. .+++...+.+|.+.|+.|.+.|...   .+|+++|.|.+||+|++++..++.      .+.-
T Consensus       106 p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~---qlvls~SkD~svRlwnI~~~~Cv~------VfGG  176 (385)
T KOG1034|consen  106 PFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRP---QLVLSASKDHSVRLWNIQTDVCVA------VFGG  176 (385)
T ss_pred             eeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCC---cEEEEecCCceEEEEeccCCeEEE------Eecc
Confidence            38999999999999996 5788889999999999999999654   479999999999999998876532      2233


Q ss_pred             eeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCc--ccee-eeccCCCccccccccccccccccCCccceEE
Q 036314          115 LRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGN--QVSI-KKRKGNNQVEEPQLEGEAISTLVGHTQCVSS  191 (347)
Q Consensus       115 ~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~  191 (347)
                      +.||.+.|.++.|+++|.+|+|++.|.++++|++...+-...  .... ...+...+............+-.-|..+|-|
T Consensus       177 ~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDC  256 (385)
T KOG1034|consen  177 VEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDC  256 (385)
T ss_pred             cccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHH
Confidence            568999999999999999999999999999999974321100  0000 0000000000000000001133457777777


Q ss_pred             EEeCCCCeEEEEecCCcEEEEEC-CCCceeeeeeeCe--------------eeEEE--EeeCCCCcEEEEecCCCcEEEE
Q 036314          192 VVWPQQETIYSASWDHSVRTWDV-EMGKDLSDIFCGK--------------ALNCI--DIGGEGSALIAAGGSDPILRIW  254 (347)
Q Consensus       192 ~~~~~~~~l~s~s~dg~v~vwd~-~~~~~~~~~~~~~--------------~~~~~--~~~~~~~~~la~~~~d~~i~iw  254 (347)
                      +.| -+++++|=|.++.|..|-. +-++.+..+..++              .+.-+  ++.+ -...||.|.+.|+|.+|
T Consensus       257 vrw-~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~-~~~~la~gnq~g~v~vw  334 (385)
T KOG1034|consen  257 VRW-FGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDP-WQKMLALGNQSGKVYVW  334 (385)
T ss_pred             HHH-HhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecH-HHHHHhhccCCCcEEEE
Confidence            766 3478999999999999976 3333322221110              11112  2222 23467889999999999


Q ss_pred             eCCCCCCCCCeEEe--cCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcC
Q 036314          255 DPRKPGTSAPVFQF--SSHNSWISACKWHNKSWFHLISASYDGKVMLWDLR  303 (347)
Q Consensus       255 d~~~~~~~~~~~~~--~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~  303 (347)
                      |++..+.+. ..++  +.-...|...+|+.|+. .|+....|++|.-||..
T Consensus       335 dL~~~ep~~-~ttl~~s~~~~tVRQ~sfS~dgs-~lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  335 DLDNNEPPK-CTTLTHSKSGSTVRQTSFSRDGS-ILVLVCDDGTVWRWDRV  383 (385)
T ss_pred             ECCCCCCcc-CceEEeccccceeeeeeecccCc-EEEEEeCCCcEEEEEee
Confidence            998754422 2233  22345688999999986 58888899999999864

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.88  E-value=8.9e-21  Score=163.31  Aligned_cols=289  Identities=15%  Similarity=0.222  Sum_probs=201.0

Q ss_pred             CCCCcCCceeeccCCC--C-CEEEEEecCCeEEEEcCCC-----eEEEEeeccCCceEEEEEeecCCCceEEEEEccCCC
Q 036314           19 EPSLHDDWVSAVDGSN--P-GFILTGCYDNLGRVWKAGG-----VCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQ   90 (347)
Q Consensus        19 ~~~~h~~~v~~~~~~~--~-~~l~sg~~d~~i~iw~~~~-----~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg   90 (347)
                      ....|...|++++|.+  . .++|+|..-|+|-+||..+     .-+..+..|.++|.++.|+|.+.   .++++.|.||
T Consensus       181 v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~---s~i~ssSyDG  257 (498)
T KOG4328|consen  181 VAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANT---SQIYSSSYDG  257 (498)
T ss_pred             eeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCCh---hheeeeccCc
Confidence            3557889999999863  3 5888999999999999842     23456889999999999999654   3688999999


Q ss_pred             cEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccc
Q 036314           91 TLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVE  170 (347)
Q Consensus        91 ~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~  170 (347)
                      +||+=|++.+..       +.+..+..-.....++.|+.+...++.+..=|...+||.+.+...                
T Consensus       258 tiR~~D~~~~i~-------e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~----------------  314 (498)
T KOG4328|consen  258 TIRLQDFEGNIS-------EEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSE----------------  314 (498)
T ss_pred             eeeeeeecchhh-------HHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCcc----------------
Confidence            999999987642       122222223444566778777766666666669999998765321                


Q ss_pred             cccccccccccccCCccceEEEEeC--CCCeEEEEecCCcEEEEECCCC--ce---eeeeeeCeeeEEEEeeCCCCcEEE
Q 036314          171 EPQLEGEAISTLVGHTQCVSSVVWP--QQETIYSASWDHSVRTWDVEMG--KD---LSDIFCGKALNCIDIGGEGSALIA  243 (347)
Q Consensus       171 ~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~l~s~s~dg~v~vwd~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~la  243 (347)
                              ..-+.-|...|.++++.  ...+|+++|.|++.+|||++.-  +.   +..+.+...+...-|+|.++. |+
T Consensus       315 --------~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gt-l~  385 (498)
T KOG4328|consen  315 --------YENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGT-LL  385 (498)
T ss_pred             --------chhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCc-eE
Confidence                    22344577789999984  3457999999999999999752  22   344455667888899888877 78


Q ss_pred             EecCCCcEEEEeCC----CCCCCCCeEEecCCCCCe--eEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecCC-CC
Q 036314          244 AGGSDPILRIWDPR----KPGTSAPVFQFSSHNSWI--SACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSH-KD  316 (347)
Q Consensus       244 ~~~~d~~i~iwd~~----~~~~~~~~~~~~~h~~~v--~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h-~~  316 (347)
                      +.++|+.|+|||..    .......+..-..+..|+  -..+|.|+.. +++.|-.-..|-|+|-+.++.+..+-.- ..
T Consensus       386 TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~-li~vg~~~r~IDv~~~~~~q~v~el~~P~~~  464 (498)
T KOG4328|consen  386 TTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYN-LIVVGRYPRPIDVFDGNGGQMVCELHDPESS  464 (498)
T ss_pred             eeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCcc-EEEEeccCcceeEEcCCCCEEeeeccCcccc
Confidence            88999999999973    211111121111222333  3457999764 6899998889999999877655554322 22


Q ss_pred             eEEE-EeecC-CC-EEEEccCCceEEEeec
Q 036314          317 KVLC-ADWWR-GD-SVISGGVDSKLCVSSG  343 (347)
Q Consensus       317 ~v~~-~~~~~-~~-~l~s~s~D~~v~vw~~  343 (347)
                      .|.+ ..|+| +. .+|.++.-|.|.||..
T Consensus       465 tI~~vn~~HP~~~~~~aG~~s~Gki~vft~  494 (498)
T KOG4328|consen  465 TIPSVNEFHPMRDTLAAGGNSSGKIYVFTN  494 (498)
T ss_pred             ccccceeecccccceeccCCccceEEEEec
Confidence            4544 35777 33 4555557899999864

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.88  E-value=5e-19  Score=154.36  Aligned_cols=294  Identities=19%  Similarity=0.281  Sum_probs=205.3

Q ss_pred             cCCceeeccCC--CCCEEEEEecCCeEEEEcCCC----eEEEEeeccC-CceEEEEEeecCCCceEEEEEccCCCcEEEE
Q 036314           23 HDDWVSAVDGS--NPGFILTGCYDNLGRVWKAGG----VCTHILEGHC-GAVSSVNIIKSDGLKYVTVATASKDQTLRLW   95 (347)
Q Consensus        23 h~~~v~~~~~~--~~~~l~sg~~d~~i~iw~~~~----~~~~~l~~h~-~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~w   95 (347)
                      -++.|..+.|.  ++++++|.| .+.+.+|+.++    +...+|..++ ..|.++.|.+++.     ++||..+|+|.||
T Consensus       199 sne~v~~a~FHPtd~nliit~G-k~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-----viTgDS~G~i~Iw  272 (626)
T KOG2106|consen  199 SNEVVFLATFHPTDPNLIITCG-KGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-----VITGDSGGNILIW  272 (626)
T ss_pred             ccceEEEEEeccCCCcEEEEeC-CceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-----EEeecCCceEEEE
Confidence            44555666665  567888876 47899999764    2234566665 5688999988553     7899999999999


Q ss_pred             eccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCC--------CCccceeeeccCCC
Q 036314           96 KFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDA--------AGNQVSIKKRKGNN  167 (347)
Q Consensus        96 d~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~--------~~~~~~~~~~~~~~  167 (347)
                      +..+.+.         .+...+|.+.|.++..-.+|.++ ||+.|..|..||-.-...        .+....+.......
T Consensus       273 ~~~~~~~---------~k~~~aH~ggv~~L~~lr~Gtll-SGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di  342 (626)
T KOG2106|consen  273 SKGTNRI---------SKQVHAHDGGVFSLCMLRDGTLL-SGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDI  342 (626)
T ss_pred             eCCCceE---------EeEeeecCCceEEEEEecCccEe-ecCccceEEeccccccccccccCchhcCCeeEEecCCCcE
Confidence            9865542         22333899999999999998755 599999999998221100        00000000000000


Q ss_pred             -------ccccccccccccccccCCccceEEEEe-CCCCeEEEEecCCcEEEEECCCCceeeeeeeCeeeEEEEeeCCCC
Q 036314          168 -------QVEEPQLEGEAISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEGS  239 (347)
Q Consensus       168 -------~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (347)
                             .+....+.........+|.+..+.++. |..+++++++.|+++++|+  ..+..-+.....+..|++|+|.+ 
T Consensus       343 ~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~~~~~~fhpsg-  419 (626)
T KOG2106|consen  343 LVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIEDPAECADFHPSG-  419 (626)
T ss_pred             EEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEecCceeEeeccCcc-
Confidence                   000011111122344678888888875 6778899999999999999  34444444456778899998765 


Q ss_pred             cEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCcc-ceee-cCCCCe
Q 036314          240 ALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWP-LSVI-DSHKDK  317 (347)
Q Consensus       240 ~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~-~~~~-~~h~~~  317 (347)
                       .+|.|...|..-+.|.+..    .+.++.-.+..++.++|+|+|. +||.||.|+.|.||-+..+.. .... ..|...
T Consensus       420 -~va~Gt~~G~w~V~d~e~~----~lv~~~~d~~~ls~v~ysp~G~-~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~  493 (626)
T KOG2106|consen  420 -VVAVGTATGRWFVLDTETQ----DLVTIHTDNEQLSVVRYSPDGA-FLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSP  493 (626)
T ss_pred             -eEEEeeccceEEEEecccc----eeEEEEecCCceEEEEEcCCCC-EEEEecCCCeEEEEEECCCCcEEEEeeeecCce
Confidence             8899999999999998752    1333333477899999999996 699999999999999876433 2222 223478


Q ss_pred             EEEEeec-CCCEEEEccCCceEEEe
Q 036314          318 VLCADWW-RGDSVISGGVDSKLCVS  341 (347)
Q Consensus       318 v~~~~~~-~~~~l~s~s~D~~v~vw  341 (347)
                      ++-++|+ ++++|.+-|.|=.|..|
T Consensus       494 ithLDwS~Ds~~~~~~S~d~eiLyW  518 (626)
T KOG2106|consen  494 ITHLDWSSDSQFLVSNSGDYEILYW  518 (626)
T ss_pred             eEEeeecCCCceEEeccCceEEEEE
Confidence            9999997 57789999999999999

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=3.4e-20  Score=160.15  Aligned_cols=266  Identities=20%  Similarity=0.306  Sum_probs=185.2

Q ss_pred             EEEEecCC-eEEEEcCC-CeEEEEeecc-CCceEEEEEeecCCCceEEEEEcc-CCCcEEEEeccccccccCccccceee
Q 036314           38 ILTGCYDN-LGRVWKAG-GVCTHILEGH-CGAVSSVNIIKSDGLKYVTVATAS-KDQTLRLWKFDAEELVNHPKKIRSFK  113 (347)
Q Consensus        38 l~sg~~d~-~i~iw~~~-~~~~~~l~~h-~~~V~~v~~~~~~~~~~~~l~s~s-~Dg~v~~wd~~~~~~~~~~~~~~~~~  113 (347)
                      +.+++.|. .+++||+. |.....+.+- ...-.++....     ..+++++. .-..|.+|.+.......      ...
T Consensus        10 ~sssS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l~-----~~yllsaq~~rp~l~vw~i~k~~~~~------q~~   78 (476)
T KOG0646|consen   10 CSSSSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTALN-----NEYLLSAQLKRPLLHVWEILKKDQVV------QYI   78 (476)
T ss_pred             EeccCCCCcceeEEecCCCceeEEecCcccccchhhhhhc-----hhheeeecccCccccccccCchhhhh------hhc
Confidence            44556665 49999974 5544455543 21111111111     01344443 34478899886433211      011


Q ss_pred             eeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEE
Q 036314          114 ILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVV  193 (347)
Q Consensus       114 ~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~  193 (347)
                      .   -.++|++++-+|+|.+++.|+--+.|++|.+.++                         ..+..+.+|-..|+++.
T Consensus        79 v---~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG-------------------------~LL~v~~aHYQ~ITcL~  130 (476)
T KOG0646|consen   79 V---LPGPVHALASSNLGYFLLAGTISGNLYLWELSSG-------------------------ILLNVLSAHYQSITCLK  130 (476)
T ss_pred             c---cccceeeeecCCCceEEEeecccCcEEEEEeccc-------------------------cHHHHHHhhccceeEEE
Confidence            1   2567999999999999999989999999998864                         45677888999999999


Q ss_pred             eC-CCCeEEEEecCCcEEEEECCC---------CceeeeeeeC-eeeEEEEeeCC-CCcEEEEecCCCcEEEEeCCCCCC
Q 036314          194 WP-QQETIYSASWDHSVRTWDVEM---------GKDLSDIFCG-KALNCIDIGGE-GSALIAAGGSDPILRIWDPRKPGT  261 (347)
Q Consensus       194 ~~-~~~~l~s~s~dg~v~vwd~~~---------~~~~~~~~~~-~~~~~~~~~~~-~~~~la~~~~d~~i~iwd~~~~~~  261 (347)
                      |. ++..|+|+|.||.|.+|.+-+         .++.+.+..+ -+++.+.+++. -...+++++.|.++++||+... .
T Consensus       131 fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g-~  209 (476)
T KOG0646|consen  131 FSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLG-V  209 (476)
T ss_pred             EeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccc-e
Confidence            96 677899999999999998632         1223333322 25666665432 2346889999999999999753 2


Q ss_pred             CCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCC----------------ccceeecCCCC--eEEEEee
Q 036314          262 SAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTA----------------WPLSVIDSHKD--KVLCADW  323 (347)
Q Consensus       262 ~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~----------------~~~~~~~~h~~--~v~~~~~  323 (347)
                        .+.++. ....+.+++.+|.+. .+..|+.+|.|.+.++.+.                .....+.||.+  +|+|++.
T Consensus       210 --LLlti~-fp~si~av~lDpae~-~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLai  285 (476)
T KOG0646|consen  210 --LLLTIT-FPSSIKAVALDPAER-VVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAI  285 (476)
T ss_pred             --eeEEEe-cCCcceeEEEccccc-EEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEE
Confidence              233332 345689999999875 5889999999999876532                22445789998  9999999


Q ss_pred             c-CCCEEEEccCCceEEEeecccCC
Q 036314          324 W-RGDSVISGGVDSKLCVSSGVSIQ  347 (347)
Q Consensus       324 ~-~~~~l~s~s~D~~v~vw~~~~~~  347 (347)
                      + +|..|+||+.||+|+||+-.|-|
T Consensus       286 s~DgtlLlSGd~dg~VcvWdi~S~Q  310 (476)
T KOG0646|consen  286 STDGTLLLSGDEDGKVCVWDIYSKQ  310 (476)
T ss_pred             ecCccEEEeeCCCCCEEEEecchHH
Confidence            8 78899999999999999987654

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.87  E-value=3.7e-19  Score=156.34  Aligned_cols=253  Identities=10%  Similarity=0.088  Sum_probs=167.2

Q ss_pred             eeeccCCC-CCEE-EEEecCCeEEEEcCC-CeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccc
Q 036314           27 VSAVDGSN-PGFI-LTGCYDNLGRVWKAG-GVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELV  103 (347)
Q Consensus        27 v~~~~~~~-~~~l-~sg~~d~~i~iw~~~-~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~  103 (347)
                      +..+++++ +..+ ++++.|+.+++||.. +.....+..+.. +..+.|++++.   ..+++++.|++|++||+.+.+. 
T Consensus        33 ~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~g~---~l~~~~~~~~~l~~~d~~~~~~-  107 (300)
T TIGR03866        33 PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFALHPNGK---ILYIANEDDNLVTVIDIETRKV-  107 (300)
T ss_pred             CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEEECCCCC---EEEEEcCCCCeEEEEECCCCeE-
Confidence            56677774 4554 677889999999975 555555665544 46778887543   2345667789999999976432 


Q ss_pred             cCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCC-cEEEEecCCCCCCCccceeeeccCCCccccccccccccccc
Q 036314          104 NHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDC-TISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTL  182 (347)
Q Consensus       104 ~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg-~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (347)
                              +..+. +...+.+++|+|+|+++++++.++ .+.+||..+...                         ....
T Consensus       108 --------~~~~~-~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~-------------------------~~~~  153 (300)
T TIGR03866       108 --------LAEIP-VGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEI-------------------------VDNV  153 (300)
T ss_pred             --------EeEee-CCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeE-------------------------EEEE
Confidence                    22333 223467899999999999888775 466778654311                         0001


Q ss_pred             cCCccceEEEEe-CCCCeEE-EEecCCcEEEEECCCCceeeeeeeC------e--eeEEEEeeCCCCcEEEEecCCCcEE
Q 036314          183 VGHTQCVSSVVW-PQQETIY-SASWDHSVRTWDVEMGKDLSDIFCG------K--ALNCIDIGGEGSALIAAGGSDPILR  252 (347)
Q Consensus       183 ~~h~~~v~~~~~-~~~~~l~-s~s~dg~v~vwd~~~~~~~~~~~~~------~--~~~~~~~~~~~~~~la~~~~d~~i~  252 (347)
                      . .......+.| ++++.|+ ++..++.|++||+++++.+..+...      .  ....+.+++++..++++.+.++.+.
T Consensus       154 ~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~  232 (300)
T TIGR03866       154 L-VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVA  232 (300)
T ss_pred             E-cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEE
Confidence            0 0112344566 5677764 4456899999999988766554321      1  1234667666655455556677899


Q ss_pred             EEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEE-eCCCcEEEEEcCCCccceeecCCCCeEEEEeecC
Q 036314          253 IWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISA-SYDGKVMLWDLRTAWPLSVIDSHKDKVLCADWWR  325 (347)
Q Consensus       253 iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~-s~D~~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~  325 (347)
                      +||++..   .....+ .+...+.+++|+|++.. |+++ +.+++|++||+++++.+.++... ...+.++++|
T Consensus       233 v~d~~~~---~~~~~~-~~~~~~~~~~~~~~g~~-l~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~  300 (300)
T TIGR03866       233 VVDAKTY---EVLDYL-LVGQRVWQLAFTPDEKY-LLTTNGVSNDVSVIDVAALKVIKSIKVG-RLPWGVVVRP  300 (300)
T ss_pred             EEECCCC---cEEEEE-EeCCCcceEEECCCCCE-EEEEcCCCCeEEEEECCCCcEEEEEEcc-cccceeEeCC
Confidence            9998642   122222 24457889999999975 5554 67999999999999888888654 4557777653

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=3.5e-20  Score=153.13  Aligned_cols=259  Identities=21%  Similarity=0.286  Sum_probs=166.7

Q ss_pred             EEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceee-eeeccccceEEEEEeCCCC-EE
Q 036314           57 THILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFK-ILRGHKASVHSIAAETSGN-MV  134 (347)
Q Consensus        57 ~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~-~~~~h~~~V~~v~~s~~~~-~l  134 (347)
                      +..|.||.+.|++++|+.    +++.|+|++.|++||+|++..-+...  .  ++++ .+.  -+..+.|+|.||.+ .+
T Consensus        79 ~~~LKgH~~~vt~~~FsS----dGK~lat~~~Dr~Ir~w~~~DF~~~e--H--r~~R~nve--~dhpT~V~FapDc~s~v  148 (420)
T KOG2096|consen   79 VSVLKGHKKEVTDVAFSS----DGKKLATISGDRSIRLWDVRDFENKE--H--RCIRQNVE--YDHPTRVVFAPDCKSVV  148 (420)
T ss_pred             hhhhhccCCceeeeEEcC----CCceeEEEeCCceEEEEecchhhhhh--h--hHhhcccc--CCCceEEEECCCcceEE
Confidence            346889999999999998    44579999999999999986532111  1  1111 111  12346789999986 55


Q ss_pred             EEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEeC-CCCeEEEEecCCcEEEEE
Q 036314          135 CSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWP-QQETIYSASWDHSVRTWD  213 (347)
Q Consensus       135 ~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~l~s~s~dg~v~vwd  213 (347)
                      ++.-...++++|.+......+... .       ......     +..-+-|.-.+..+... .+.+|+|++.|.+|.+|+
T Consensus       149 v~~~~g~~l~vyk~~K~~dG~~~~-~-------~v~~D~-----~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~  215 (420)
T KOG2096|consen  149 VSVKRGNKLCVYKLVKKTDGSGSH-H-------FVHIDN-----LEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWD  215 (420)
T ss_pred             EEEccCCEEEEEEeeecccCCCCc-c-------cccccc-----cccchhcccceEEEeecCCceEEEEecCCCcEEEEe
Confidence            677777899999765432211000 0       000000     00112244445555443 567899999999999999


Q ss_pred             CCCCceeeeeeeCee-eEEEEeeCCCCcEEEEecCCCcEEEEeCCCC--C---CCCCeEEecCCCCCeeEEEeCCCCCeE
Q 036314          214 VEMGKDLSDIFCGKA-LNCIDIGGEGSALIAAGGSDPILRIWDPRKP--G---TSAPVFQFSSHNSWISACKWHNKSWFH  287 (347)
Q Consensus       214 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~--~---~~~~~~~~~~h~~~v~~v~~s~~~~~~  287 (347)
                      ++ |+.+..+..... ....++ +|+++++|+++.---|++|.+--.  +   .....+.+.||.+.|...+|+|+.. .
T Consensus       216 lk-Gq~L~~idtnq~~n~~aav-SP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~-r  292 (420)
T KOG2096|consen  216 LK-GQLLQSIDTNQSSNYDAAV-SPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSST-R  292 (420)
T ss_pred             cC-Cceeeeeccccccccceee-CCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcc-e
Confidence            98 777777654432 233444 456778899888889999985211  1   1234688999999999999999875 6


Q ss_pred             EEEEeCCCcEEEEEcCCC----cc---ceee----cCCCCeEEEEeecC-CCEEEEccCCceEEEee
Q 036314          288 LISASYDGKVMLWDLRTA----WP---LSVI----DSHKDKVLCADWWR-GDSVISGGVDSKLCVSS  342 (347)
Q Consensus       288 l~s~s~D~~i~lwd~~~~----~~---~~~~----~~h~~~v~~~~~~~-~~~l~s~s~D~~v~vw~  342 (347)
                      ++|.|.||++||||.+-.    +.   +++.    ..-.+.-..++.+| |+.||. +...++.++.
T Consensus       293 ~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~-s~gs~l~~~~  358 (420)
T KOG2096|consen  293 AVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAV-SFGSDLKVFA  358 (420)
T ss_pred             eEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEe-ecCCceEEEE
Confidence            999999999999997632    22   2222    11122333677877 545543 4555666653

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.87  E-value=3.6e-20  Score=161.11  Aligned_cols=253  Identities=17%  Similarity=0.223  Sum_probs=183.5

Q ss_pred             eeeccCCCCCEEE--EEecCCeEEEEcCCCe-----EEEEeeccC-CceEEEEEeecCCCceEEEEEccCCCcEEEEecc
Q 036314           27 VSAVDGSNPGFIL--TGCYDNLGRVWKAGGV-----CTHILEGHC-GAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFD   98 (347)
Q Consensus        27 v~~~~~~~~~~l~--sg~~d~~i~iw~~~~~-----~~~~l~~h~-~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~   98 (347)
                      +.++......+|+  +.+.|..+++|.-.|+     .+..+.|.. ..|.++.++       .++++|+..++|+|||+.
T Consensus        37 ~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~S-------~y~~sgG~~~~Vkiwdl~  109 (673)
T KOG4378|consen   37 DFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQS-------LYEISGGQSGCVKIWDLR  109 (673)
T ss_pred             ceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhhcc-------eeeeccCcCceeeehhhH
Confidence            6777766555444  4556779999964333     223334432 233444333       478999999999999997


Q ss_pred             ccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccc
Q 036314           99 AEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEA  178 (347)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (347)
                      ..         .+.+.+.+|++.|++|.++-...+||+++..|.|.|-.+.+...                         
T Consensus       110 ~k---------l~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~-------------------------  155 (673)
T KOG4378|consen  110 AK---------LIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQK-------------------------  155 (673)
T ss_pred             HH---------HHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCcc-------------------------
Confidence            43         23456789999999999999999999999999999998765321                         


Q ss_pred             cccccCC-ccceEEEEeCCCC--eEEEEecCCcEEEEECCCCceeeeee--eCeeeEEEEeeCCCCcEEEEecCCCcEEE
Q 036314          179 ISTLVGH-TQCVSSVVWPQQE--TIYSASWDHSVRTWDVEMGKDLSDIF--CGKALNCIDIGGEGSALIAAGGSDPILRI  253 (347)
Q Consensus       179 ~~~~~~h-~~~v~~~~~~~~~--~l~s~s~dg~v~vwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~la~~~~d~~i~i  253 (347)
                      ..++... ...|+-+.|+...  .|.+++.+|.|.+||+....++..+.  +..+...++|+|.+..+|++-+.|.+|.+
T Consensus       156 tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~  235 (673)
T KOG4378|consen  156 TTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINI  235 (673)
T ss_pred             ccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEE
Confidence            1112111 2345556664332  47788999999999998777666554  34466778999999999999999999999


Q ss_pred             EeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCC-CccceeecCCCCeEEEEeecC
Q 036314          254 WDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRT-AWPLSVIDSHKDKVLCADWWR  325 (347)
Q Consensus       254 wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~-~~~~~~~~~h~~~v~~~~~~~  325 (347)
                      ||++....   ...+. -..+...++|.++| ++|+.|...|.|..||+|. ..++.++..|...|.+++|-+
T Consensus       236 yD~~s~~s---~~~l~-y~~Plstvaf~~~G-~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~  303 (673)
T KOG4378|consen  236 YDIRSQAS---TDRLT-YSHPLSTVAFSECG-TYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQP  303 (673)
T ss_pred             eecccccc---cceee-ecCCcceeeecCCc-eEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeee
Confidence            99985332   11221 22357789999998 4699999999999999985 467889999999999999954

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.87  E-value=4.2e-20  Score=159.19  Aligned_cols=254  Identities=17%  Similarity=0.263  Sum_probs=181.8

Q ss_pred             EeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCC-CEEEEe
Q 036314           59 ILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSG-NMVCSG  137 (347)
Q Consensus        59 ~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~-~~l~sg  137 (347)
                      ...-|.+.|++++|+|..+  ..++|+|..-|+|-+||+..++     +....+..+..|..+|.++.|+|.+ ..+++.
T Consensus       181 v~kv~~~Rit~l~fHPt~~--~~lva~GdK~G~VG~Wn~~~~~-----~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ss  253 (498)
T KOG4328|consen  181 VAKVTDRRITSLAFHPTEN--RKLVAVGDKGGQVGLWNFGTQE-----KDKDGVYLFTPHSGPVSGLKFSPANTSQIYSS  253 (498)
T ss_pred             eeEecccceEEEEecccCc--ceEEEEccCCCcEEEEecCCCC-----CccCceEEeccCCccccceEecCCChhheeee
Confidence            4455788999999999653  2578999999999999996332     1122445688999999999999976 689999


Q ss_pred             eCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEeC-CCCeEEEEecCCcEEEEECCC
Q 036314          138 SWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWP-QQETIYSASWDHSVRTWDVEM  216 (347)
Q Consensus       138 s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~l~s~s~dg~v~vwd~~~  216 (347)
                      |+||+||+=|++....                       +.+..+..-.....++.++ +...++.+..=|.+.+||+++
T Consensus       254 SyDGtiR~~D~~~~i~-----------------------e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~  310 (498)
T KOG4328|consen  254 SYDGTIRLQDFEGNIS-----------------------EEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRT  310 (498)
T ss_pred             ccCceeeeeeecchhh-----------------------HHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeec
Confidence            9999999998875311                       1111222222334455554 445566666556999999998


Q ss_pred             Cce-eeeee-eCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCC-CeEEecCCCCCeeEEEeCCCCCeEEEEEeC
Q 036314          217 GKD-LSDIF-CGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSA-PVFQFSSHNSWISACKWHNKSWFHLISASY  293 (347)
Q Consensus       217 ~~~-~~~~~-~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~-~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~  293 (347)
                      +.. ...+. +...+..+++.|....++|+++.|++++|||+|+..... |....-.|...|.+..|||.+.. |+|.+.
T Consensus       311 ~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gt-l~TT~~  389 (498)
T KOG4328|consen  311 DGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGT-LLTTCQ  389 (498)
T ss_pred             CCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCc-eEeecc
Confidence            653 33332 345789999999989999999999999999998643322 33444579999999999999987 999999


Q ss_pred             CCcEEEEEcC----CCccceeecCCCC------eEEEEeecC-CCEEEEccCCceEEEeecc
Q 036314          294 DGKVMLWDLR----TAWPLSVIDSHKD------KVLCADWWR-GDSVISGGVDSKLCVSSGV  344 (347)
Q Consensus       294 D~~i~lwd~~----~~~~~~~~~~h~~------~v~~~~~~~-~~~l~s~s~D~~v~vw~~~  344 (347)
                      |..|+|||..    .-++..++. |..      .....+|.| ..+++.|-.-..|-|+++.
T Consensus       390 D~~IRv~dss~~sa~~~p~~~I~-Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~  450 (498)
T KOG4328|consen  390 DNEIRVFDSSCISAKDEPLGTIP-HNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGN  450 (498)
T ss_pred             CCceEEeecccccccCCccceee-ccCcccccccchhheeCCCccEEEEeccCcceeEEcCC
Confidence            9999999984    333333332 221      123467755 4467787777778777765

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.87  E-value=1.6e-19  Score=163.29  Aligned_cols=284  Identities=16%  Similarity=0.225  Sum_probs=197.8

Q ss_pred             CC-CCCEEEEEecCCeEEEEcCC-----CeEEEEeeccCCceEEEEEeecC-------CCceEEEEEccCCCcEEEEecc
Q 036314           32 GS-NPGFILTGCYDNLGRVWKAG-----GVCTHILEGHCGAVSSVNIIKSD-------GLKYVTVATASKDQTLRLWKFD   98 (347)
Q Consensus        32 ~~-~~~~l~sg~~d~~i~iw~~~-----~~~~~~l~~h~~~V~~v~~~~~~-------~~~~~~l~s~s~Dg~v~~wd~~   98 (347)
                      |. ..+.|...-.|..+++||+.     |++ ..+--|...|+.+...|-.       -.....+.|+|.|++||+|+++
T Consensus       332 Fdet~~klscVYndhSlYvWDvrD~~kvgk~-~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~  410 (1080)
T KOG1408|consen  332 FDETTDKLSCVYNDHSLYVWDVRDVNKVGKC-SSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLA  410 (1080)
T ss_pred             ecCCCceEEEEEcCceEEEEeccccccccce-eeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecc
Confidence            55 34567777789999999974     333 3455688888887765411       0011247899999999999987


Q ss_pred             ccc---c----------ccCc---c------------ccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCC
Q 036314           99 AEE---L----------VNHP---K------------KIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTND  150 (347)
Q Consensus        99 ~~~---~----------~~~~---~------------~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~  150 (347)
                      ..+   .          +..+   .            ..+.....-+..-.+++++.+|+|+.|++|..-|+++||++..
T Consensus       411 ~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~  490 (1080)
T KOG1408|consen  411 FCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQE  490 (1080)
T ss_pred             cccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehh
Confidence            521   1          0000   0            0011111223456789999999999999999999999999875


Q ss_pred             CCCCCccceeeeccCCCccccccccccccccccCCccceEEEEeCC----CCeEEEEecCCcEEEEECCCCcee-eeeee
Q 036314          151 SDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWPQ----QETIYSASWDHSVRTWDVEMGKDL-SDIFC  225 (347)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~----~~~l~s~s~dg~v~vwd~~~~~~~-~~~~~  225 (347)
                      .                         .....+..|+..|.++.|+.    .+.|++++.|+.|.|||+...-.+ .++-.
T Consensus       491 l-------------------------~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~  545 (1080)
T KOG1408|consen  491 L-------------------------EYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDG  545 (1080)
T ss_pred             h-------------------------hhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcc
Confidence            3                         22446678999999999852    356899999999999999765433 33332


Q ss_pred             -CeeeEEEEeeCCCC-cEEEEecCCCcEEEEeCCCCCCCCCeEEecCCC-----CCeeEEEeCCCCCeEEEEEeCCCcEE
Q 036314          226 -GKALNCIDIGGEGS-ALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHN-----SWISACKWHNKSWFHLISASYDGKVM  298 (347)
Q Consensus       226 -~~~~~~~~~~~~~~-~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~-----~~v~~v~~s~~~~~~l~s~s~D~~i~  298 (347)
                       ...++.+.|...+. ..+++++.|..|.+---++...   -..+..|+     ..+.+++..|... ++++++.|..|+
T Consensus       546 HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~---g~~f~r~t~t~~ktTlYDm~Vdp~~k-~v~t~cQDrnir  621 (1080)
T KOG1408|consen  546 HSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASS---GRLFPRHTQTLSKTTLYDMAVDPTSK-LVVTVCQDRNIR  621 (1080)
T ss_pred             cccceeEEEEeecCCceEEEeccCchhhheehhccccC---ceeccccccccccceEEEeeeCCCcc-eEEEEecccceE
Confidence             34678888865553 3466788888775533222111   12222333     2477888888875 699999999999


Q ss_pred             EEEcCCCccceeec---CCCCeEEEEeecC-CCEEEEccCCceEEEeeccc
Q 036314          299 LWDLRTAWPLSVID---SHKDKVLCADWWR-GDSVISGGVDSKLCVSSGVS  345 (347)
Q Consensus       299 lwd~~~~~~~~~~~---~h~~~v~~~~~~~-~~~l~s~s~D~~v~vw~~~~  345 (347)
                      |||+..++..+.|.   +|.+....+..-| |-+||+...|+++++++.+|
T Consensus       622 if~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~s  672 (1080)
T KOG1408|consen  622 IFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVS  672 (1080)
T ss_pred             EEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEecc
Confidence            99999999998886   4666777777755 77899999999999998764

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.86  E-value=3.1e-20  Score=161.52  Aligned_cols=261  Identities=14%  Similarity=0.204  Sum_probs=193.4

Q ss_pred             CeEEEEcCCCeE-EEEeeccC--CceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeeeeccccc
Q 036314           45 NLGRVWKAGGVC-THILEGHC--GAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKAS  121 (347)
Q Consensus        45 ~~i~iw~~~~~~-~~~l~~h~--~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~  121 (347)
                      .++++||..... .-.+..|+  ..++++.|....   ...+++.+.|..|++|.-.....     .......+.+.  .
T Consensus        12 d~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n---~lvvas~~gdk~~~~~~K~g~~~-----~Vp~~~k~~gd--~   81 (673)
T KOG4378|consen   12 DKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRN---FLVVASMAGDKVMRIKEKDGKTP-----EVPRVRKLTGD--N   81 (673)
T ss_pred             CceEEeecccccCccccccCCCCCcceeeeccccc---eEEEeecCCceeEEEecccCCCC-----ccceeeccccc--h
Confidence            378999964211 11122222  227888887632   24567788899999998654310     11122333333  3


Q ss_pred             eEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEeC-CCCeE
Q 036314          122 VHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWP-QQETI  200 (347)
Q Consensus       122 V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~l  200 (347)
                      -.||+......++++|+..++|+|||+...                         -+.+.+++|+..|.++.|. .+.+|
T Consensus        82 ~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~k-------------------------l~hr~lkdh~stvt~v~YN~~Deyi  136 (673)
T KOG4378|consen   82 AFCVACASQSLYEISGGQSGCVKIWDLRAK-------------------------LIHRFLKDHQSTVTYVDYNNTDEYI  136 (673)
T ss_pred             HHHHhhhhcceeeeccCcCceeeehhhHHH-------------------------HHhhhccCCcceeEEEEecCCccee
Confidence            345555555689999999999999998632                         2356788999999999985 56799


Q ss_pred             EEEecCCcEEEEECCCCceeeeeeeC--eeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeE-EecCCCCCeeE
Q 036314          201 YSASWDHSVRTWDVEMGKDLSDIFCG--KALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVF-QFSSHNSWISA  277 (347)
Q Consensus       201 ~s~s~dg~v~vwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~-~~~~h~~~v~~  277 (347)
                      ++++..|-|.|..+.++.....+..+  ..+.-+.+++....++.+++++|.|.+||....   .+.+ -.+.|..+...
T Consensus       137 Asvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~---sp~~~~~~~HsAP~~g  213 (673)
T KOG4378|consen  137 ASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGM---SPIFHASEAHSAPCRG  213 (673)
T ss_pred             EEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCC---CcccchhhhccCCcCc
Confidence            99999999999999988766555433  356678888888888999999999999998742   2233 34678888899


Q ss_pred             EEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecCCCCeEEEEeecC-CCEEEEccCCceEEEeecc
Q 036314          278 CKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKVLCADWWR-GDSVISGGVDSKLCVSSGV  344 (347)
Q Consensus       278 v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~l~s~s~D~~v~vw~~~  344 (347)
                      +.|+|.++.+|++.+.|+.|.+||++.......+.+ ..+...|+|.+ |.+|+.|+..|.|..|+.-
T Consensus       214 icfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y-~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R  280 (673)
T KOG4378|consen  214 ICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTY-SHPLSTVAFSECGTYLCAGNSKGELIAYDMR  280 (673)
T ss_pred             ceecCCccceEEEecccceEEEeecccccccceeee-cCCcceeeecCCceEEEeecCCceEEEEecc
Confidence            999999999999999999999999997776777765 34778999985 8889999999999999854

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.85  E-value=1.4e-17  Score=152.00  Aligned_cols=287  Identities=29%  Similarity=0.440  Sum_probs=209.7

Q ss_pred             CCCCcCCceeeccCC-CCCEEEEEecCCeEEEEcCCCe--EEEEeeccCC-ceEEEEE-eecCCCceEEEEE-ccCCCcE
Q 036314           19 EPSLHDDWVSAVDGS-NPGFILTGCYDNLGRVWKAGGV--CTHILEGHCG-AVSSVNI-IKSDGLKYVTVAT-ASKDQTL   92 (347)
Q Consensus        19 ~~~~h~~~v~~~~~~-~~~~l~sg~~d~~i~iw~~~~~--~~~~l~~h~~-~V~~v~~-~~~~~~~~~~l~s-~s~Dg~v   92 (347)
                      ....|...+..+.+. .+..++.++.|+.+.+|+....  ....+.++.. .+..+.+ .++..   ..++. +..|+.+
T Consensus        60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~d~~~  136 (466)
T COG2319          60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGN---SILLASSSLDGTV  136 (466)
T ss_pred             eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcc---eEEeccCCCCccE
Confidence            345899999999987 4568888989999999997543  5666777543 6777766 33222   23444 4559999


Q ss_pred             EEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeC-CCcEEEEecCCCCCCCccceeeeccCCCcccc
Q 036314           93 RLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSW-DCTISLWRTNDSDAAGNQVSIKKRKGNNQVEE  171 (347)
Q Consensus        93 ~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~-Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~  171 (347)
                      ++|+....        ......+..|...|..++|++++..+++++. |+.+++|++...                    
T Consensus       137 ~~~~~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------  188 (466)
T COG2319         137 KLWDLSTP--------GKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTG--------------------  188 (466)
T ss_pred             EEEEecCC--------CeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCC--------------------
Confidence            99998751        1244567889999999999999998888886 999999998642                    


Q ss_pred             ccccccccccccCCccceEEEEeC-CCC-eEEEEecCCcEEEEECCCCceee-eeeeCeeeEEEEeeCCCCcEEEEecCC
Q 036314          172 PQLEGEAISTLVGHTQCVSSVVWP-QQE-TIYSASWDHSVRTWDVEMGKDLS-DIFCGKALNCIDIGGEGSALIAAGGSD  248 (347)
Q Consensus       172 ~~~~~~~~~~~~~h~~~v~~~~~~-~~~-~l~s~s~dg~v~vwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~la~~~~d  248 (347)
                           ..+..+.+|...+.++.|. ++. .+++++.|+.+++||...+.... .+..+.......+.+.+ ..+++++.|
T Consensus       189 -----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d  262 (466)
T COG2319         189 -----KPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDG-SLLASGSSD  262 (466)
T ss_pred             -----ceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcceeEeECCCC-CEEEEecCC
Confidence                 2244566688999999985 555 45556999999999988666665 34332222122565554 677889999


Q ss_pred             CcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeec--CCCCeEEEEeecCC
Q 036314          249 PILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVID--SHKDKVLCADWWRG  326 (347)
Q Consensus       249 ~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~--~h~~~v~~~~~~~~  326 (347)
                      +.+++||++....  ....+.+|...+.++.|+|++.. +++++.|+.+++||.+.........  .|.+.+..+.|.+.
T Consensus       263 ~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (466)
T COG2319         263 GTIRLWDLRSSSS--LLRTLSGHSSSVLSVAFSPDGKL-LASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPD  339 (466)
T ss_pred             CcEEEeeecCCCc--EEEEEecCCccEEEEEECCCCCE-EEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCC
Confidence            9999999875432  23333678899999999997655 6668888999999998876665554  88888888888322


Q ss_pred             -CEEEEc-cCCceEEEeeccc
Q 036314          327 -DSVISG-GVDSKLCVSSGVS  345 (347)
Q Consensus       327 -~~l~s~-s~D~~v~vw~~~~  345 (347)
                       ..++.+ ..|+.+.+|....
T Consensus       340 ~~~~~~~~~~d~~~~~~~~~~  360 (466)
T COG2319         340 GSLLVSGGSDDGTIRLWDLRT  360 (466)
T ss_pred             CCEEEEeecCCCcEEeeecCC
Confidence             455555 6889999988653

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.85  E-value=6e-20  Score=159.98  Aligned_cols=254  Identities=15%  Similarity=0.260  Sum_probs=185.4

Q ss_pred             ceEEEEEEeccCCCCcCCCCCcCCceeeccCC-CCCEEEEEecCCeEEEEcCCCe---EEEEeeccCCceEEEEEeecCC
Q 036314            2 KVLEIEYIKAVAPQKEEEPSLHDDWVSAVDGS-NPGFILTGCYDNLGRVWKAGGV---CTHILEGHCGAVSSVNIIKSDG   77 (347)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~l~sg~~d~~i~iw~~~~~---~~~~l~~h~~~V~~v~~~~~~~   77 (347)
                      |||+|.-.-+-.|-+.-.-..-.++|++.... ++..|++||.-.++.|||+...   ....|......-.+++++|+. 
T Consensus       443 KVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDa-  521 (705)
T KOG0639|consen  443 KVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDA-  521 (705)
T ss_pred             EEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCcc-
Confidence            67777655333333333333467889988865 7789999999999999998532   223344444445677888843 


Q ss_pred             CceEEEEEccCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCcc
Q 036314           78 LKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQ  157 (347)
Q Consensus        78 ~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~  157 (347)
                         +...++..||.|+|||+.+..         .++.|.||++.+.|+.+++||..|.||+-|.+||-||++.+.     
T Consensus       522 ---kvcFsccsdGnI~vwDLhnq~---------~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregr-----  584 (705)
T KOG0639|consen  522 ---KVCFSCCSDGNIAVWDLHNQT---------LVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGR-----  584 (705)
T ss_pred             ---ceeeeeccCCcEEEEEcccce---------eeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhh-----
Confidence               467889999999999998764         346789999999999999999999999999999999987542     


Q ss_pred             ceeeeccCCCccccccccccccccccCC--ccceEEEEe-CCCCeEEEEecCCcEEEEECCCCceeeeeeeCeeeEEEEe
Q 036314          158 VSIKKRKGNNQVEEPQLEGEAISTLVGH--TQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDI  234 (347)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~-~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~  234 (347)
                                             .+..|  ...|.++.+ |.++.|+.|=.++.+-|-.....+....-.+...+-.+.|
T Consensus       585 -----------------------qlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyqlhlheScVLSlKF  641 (705)
T KOG0639|consen  585 -----------------------QLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLSLKF  641 (705)
T ss_pred             -----------------------hhhhhhhhhhheecccCCCccceeeecccCcEEEEecCCccceeecccccEEEEEEe
Confidence                                   11222  345777765 7888999998888888877654433222223445677888


Q ss_pred             eCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEc
Q 036314          235 GGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDL  302 (347)
Q Consensus       235 ~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~  302 (347)
                      .+-+ ..+++.+.|+.+..|..--+   ..+++. ...+.|.+|..+.|+. +++|||.|+...||.+
T Consensus       642 a~cG-kwfvStGkDnlLnawrtPyG---asiFqs-kE~SsVlsCDIS~ddk-yIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  642 AYCG-KWFVSTGKDNLLNAWRTPYG---ASIFQS-KESSSVLSCDISFDDK-YIVTGSGDKKATVYEV  703 (705)
T ss_pred             cccC-ceeeecCchhhhhhccCccc---cceeec-cccCcceeeeeccCce-EEEecCCCcceEEEEE
Confidence            6654 57888899999999976432   235554 3566799999998885 5999999999888875

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.84  E-value=5.4e-20  Score=162.39  Aligned_cols=263  Identities=18%  Similarity=0.189  Sum_probs=172.8

Q ss_pred             CCCcCCceeeccCCC-CCEEEEEecCCeEEEEcCC------C---eEEEEeeccCCceEEEEEeecCCCceEEEEEccCC
Q 036314           20 PSLHDDWVSAVDGSN-PGFILTGCYDNLGRVWKAG------G---VCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKD   89 (347)
Q Consensus        20 ~~~h~~~v~~~~~~~-~~~l~sg~~d~~i~iw~~~------~---~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~D   89 (347)
                      ..-|.+.|++++|.+ ...|++++.||++++|++.      .   +.+.+|.+|.++|.|+.+.+    .+..+++|+.|
T Consensus       290 l~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~----n~~~~ysgg~D  365 (577)
T KOG0642|consen  290 LRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPS----NGEHCYSGGID  365 (577)
T ss_pred             eecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecC----CceEEEeeccC
Confidence            446899999999874 4589999999999999871      1   24567999999999999876    33579999999


Q ss_pred             CcEEEEeccccccccC-ccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCc
Q 036314           90 QTLRLWKFDAEELVNH-PKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQ  168 (347)
Q Consensus        90 g~v~~wd~~~~~~~~~-~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~  168 (347)
                      |+|+.|++..+.-... -........+.||++.|+.+++|+...+|+++|.|||+++|+......     ....      
T Consensus       366 g~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-----~~f~------  434 (577)
T KOG0642|consen  366 GTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-----CTFG------  434 (577)
T ss_pred             ceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-----cccC------
Confidence            9999998763321100 111233456889999999999999999999999999999998654321     0000      


Q ss_pred             cccccccccccccccCCccceEEEEeCCCC--eEEEEecCCcEEEEECCCCceeeeeee--------CeeeEEEEeeCCC
Q 036314          169 VEEPQLEGEAISTLVGHTQCVSSVVWPQQE--TIYSASWDHSVRTWDVEMGKDLSDIFC--------GKALNCIDIGGEG  238 (347)
Q Consensus       169 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~l~s~s~dg~v~vwd~~~~~~~~~~~~--------~~~~~~~~~~~~~  238 (347)
                                  ....|. .-.++.+-..+  ..++...-+.-.++|.+....+..+..        ...++-+..++..
T Consensus       435 ------------~~~e~g-~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~  501 (577)
T KOG0642|consen  435 ------------EPKEHG-YPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTA  501 (577)
T ss_pred             ------------CccccC-CcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCC
Confidence                        000000 00111110000  011111111111222222222221111        0122333444444


Q ss_pred             CcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecCCC
Q 036314          239 SALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHK  315 (347)
Q Consensus       239 ~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h~  315 (347)
                       .+..++.+|..|+++|-..   ..+++....|...++++++.|+|.+ |++++.|+.+++|.+....++.....|.
T Consensus       502 -~~~~~~hed~~Ir~~dn~~---~~~l~s~~a~~~svtslai~~ng~~-l~s~s~d~sv~l~kld~k~~~~es~~~r  573 (577)
T KOG0642|consen  502 -DITFTAHEDRSIRFFDNKT---GKILHSMVAHKDSVTSLAIDPNGPY-LMSGSHDGSVRLWKLDVKTCVLESTAHR  573 (577)
T ss_pred             -CeeEecccCCceecccccc---cccchheeeccceecceeecCCCce-EEeecCCceeehhhccchheeecccccc
Confidence             5778899999999999764   3456777789999999999999975 9999999999999998766666666665

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.84  E-value=5.2e-19  Score=146.02  Aligned_cols=282  Identities=13%  Similarity=0.243  Sum_probs=189.5

Q ss_pred             eeeccCC-CCCEEEEEecCCeEEEEcCCC-eEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEecccccccc
Q 036314           27 VSAVDGS-NPGFILTGCYDNLGRVWKAGG-VCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVN  104 (347)
Q Consensus        27 v~~~~~~-~~~~l~sg~~d~~i~iw~~~~-~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~  104 (347)
                      -.++.|+ -|.+||.|+.||.+-|||... ..-+.|.+|.-+|.++.|++++    +.|+|+|.|..|++||+..+.++ 
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dg----r~LltsS~D~si~lwDl~~gs~l-  100 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDG----RKLLTSSRDWSIKLWDLLKGSPL-  100 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCC----CEeeeecCCceeEEEeccCCCce-
Confidence            5567788 578999999999999999753 2446789999999999999944    57999999999999999877532 


Q ss_pred             CccccceeeeeeccccceEEEEEeCCC-CEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCcccccccccccccccc
Q 036314          105 HPKKIRSFKILRGHKASVHSIAAETSG-NMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLV  183 (347)
Q Consensus       105 ~~~~~~~~~~~~~h~~~V~~v~~s~~~-~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (347)
                              +.++ ..++|..+.|+|-. +.++..-.+..-.+-+..++...  .     .     +...  ++. +..-.
T Consensus       101 --------~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~--~-----L-----p~d~--d~d-ln~sa  156 (405)
T KOG1273|consen  101 --------KRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHS--V-----L-----PKDD--DGD-LNSSA  156 (405)
T ss_pred             --------eEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCcee--e-----c-----cCCC--ccc-ccccc
Confidence                    2232 47889999998854 34443333333334343321100  0     0     0000  000 00000


Q ss_pred             CCccceEEEEe-CCCCeEEEEecCCcEEEEECCCCceeeeeeeC--eeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCC
Q 036314          184 GHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFCG--KALNCIDIGGEGSALIAAGGSDPILRIWDPRKPG  260 (347)
Q Consensus       184 ~h~~~v~~~~~-~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~  260 (347)
                      .|      ..| ..|+++++|...|.+.++|..+-+++..+.-.  ..+..+-+.- .+..++..+.|..||.|+++.-.
T Consensus       157 s~------~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~-~g~~liiNtsDRvIR~ye~~di~  229 (405)
T KOG1273|consen  157 SH------GVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSR-KGRFLIINTSDRVIRTYEISDID  229 (405)
T ss_pred             cc------ccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEec-cCcEEEEecCCceEEEEehhhhc
Confidence            11      123 46889999999999999999988777655422  3556666643 45678889999999999976211


Q ss_pred             ------CCCCeEEec---CCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecCCC-CeEEEEeecCCC-EE
Q 036314          261 ------TSAPVFQFS---SHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHK-DKVLCADWWRGD-SV  329 (347)
Q Consensus       261 ------~~~~~~~~~---~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h~-~~v~~~~~~~~~-~l  329 (347)
                            .+.+.+.+.   .-..| .+|.|+.+|.+..|+.+.-..+.||.-..|..++.+.|.+ +....+.|+|-. .+
T Consensus       230 ~~~r~~e~e~~~K~qDvVNk~~W-k~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i  308 (405)
T KOG1273|consen  230 DEGRDGEVEPEHKLQDVVNKLQW-KKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPII  308 (405)
T ss_pred             ccCccCCcChhHHHHHHHhhhhh-hheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeee
Confidence                  111111111   11112 4678999998766655566789999999999999998887 566789998754 45


Q ss_pred             EEccCCceEEEeecccC
Q 036314          330 ISGGVDSKLCVSSGVSI  346 (347)
Q Consensus       330 ~s~s~D~~v~vw~~~~~  346 (347)
                      ++- ..|+|++|+-+++
T Consensus       309 ~si-~sg~v~iw~~~~~  324 (405)
T KOG1273|consen  309 ASI-ASGVVYIWAVVQV  324 (405)
T ss_pred             eec-cCCceEEEEeecc
Confidence            554 7899999997654

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.84  E-value=2.8e-19  Score=151.60  Aligned_cols=215  Identities=17%  Similarity=0.283  Sum_probs=161.5

Q ss_pred             EeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCC-CEEEEe
Q 036314           59 ILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSG-NMVCSG  137 (347)
Q Consensus        59 ~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~-~~l~sg  137 (347)
                      .+.||+++|..++|.|-+.   ..|||||+|.+|++|++..+.+...  ..++...|.||...|.-|+|+|.. +.|+|+
T Consensus        76 ~v~GHt~~vLDi~w~PfnD---~vIASgSeD~~v~vW~IPe~~l~~~--ltepvv~L~gH~rrVg~V~wHPtA~NVLlsa  150 (472)
T KOG0303|consen   76 LVCGHTAPVLDIDWCPFND---CVIASGSEDTKVMVWQIPENGLTRD--LTEPVVELYGHQRRVGLVQWHPTAPNVLLSA  150 (472)
T ss_pred             CccCccccccccccCccCC---ceeecCCCCceEEEEECCCcccccC--cccceEEEeecceeEEEEeecccchhhHhhc
Confidence            4779999999999998543   4799999999999999986654322  235677899999999999999986 688999


Q ss_pred             eCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEeC-CCCeEEEEecCCcEEEEECCC
Q 036314          138 SWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWP-QQETIYSASWDHSVRTWDVEM  216 (347)
Q Consensus       138 s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~l~s~s~dg~v~vwd~~~  216 (347)
                      +.|.+|.+||+.+++                         .+.++. |.+.|.++.|+ +|.+|++++.|+.|||||.++
T Consensus       151 g~Dn~v~iWnv~tge-------------------------ali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~  204 (472)
T KOG0303|consen  151 GSDNTVSIWNVGTGE-------------------------ALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRR  204 (472)
T ss_pred             cCCceEEEEeccCCc-------------------------eeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCC
Confidence            999999999998753                         233455 99999999995 788999999999999999999


Q ss_pred             CceeeeeeeC--eeeEEEEeeCCCCcEEEEe---cCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEE
Q 036314          217 GKDLSDIFCG--KALNCIDIGGEGSALIAAG---GSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISA  291 (347)
Q Consensus       217 ~~~~~~~~~~--~~~~~~~~~~~~~~~la~~---~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~  291 (347)
                      ++.+..-..+  .......|..++ .++.+|   ..+..+.|||......+.....+. ..+.|.-=-|.|+..-.-++|
T Consensus       205 ~~~v~e~~~heG~k~~Raifl~~g-~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elD-tSnGvl~PFyD~dt~ivYl~G  282 (472)
T KOG0303|consen  205 GTVVSEGVAHEGAKPARAIFLASG-KIFTTGFSRMSERQIALWDPNNLEEPIALQELD-TSNGVLLPFYDPDTSIVYLCG  282 (472)
T ss_pred             CcEeeecccccCCCcceeEEeccC-ceeeeccccccccceeccCcccccCcceeEEec-cCCceEEeeecCCCCEEEEEe
Confidence            9877654322  222233333333 355554   347899999987655554444553 334455445678776656677


Q ss_pred             eCCCcEEEEEcCCCc
Q 036314          292 SYDGKVMLWDLRTAW  306 (347)
Q Consensus       292 s~D~~i~lwd~~~~~  306 (347)
                      -.|+.||-|++....
T Consensus       283 KGD~~IRYyEit~d~  297 (472)
T KOG0303|consen  283 KGDSSIRYFEITNEP  297 (472)
T ss_pred             cCCcceEEEEecCCC
Confidence            799999999997654

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.84  E-value=1.1e-18  Score=162.02  Aligned_cols=242  Identities=16%  Similarity=0.187  Sum_probs=179.5

Q ss_pred             ccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCC
Q 036314           62 GHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDC  141 (347)
Q Consensus        62 ~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg  141 (347)
                      +|++..+.|.+.+++    .+|++++.||.||+|+.....     +.++   ++.-|...|.+++.  ++..|++|+.++
T Consensus        11 aht~G~t~i~~d~~g----efi~tcgsdg~ir~~~~~sd~-----e~P~---ti~~~g~~v~~ia~--~s~~f~~~s~~~   76 (933)
T KOG1274|consen   11 AHTGGLTLICYDPDG----EFICTCGSDGDIRKWKTNSDE-----EEPE---TIDISGELVSSIAC--YSNHFLTGSEQN   76 (933)
T ss_pred             hccCceEEEEEcCCC----CEEEEecCCCceEEeecCCcc-----cCCc---hhhccCceeEEEee--cccceEEeeccc
Confidence            677778889988854    379999999999999976531     1111   22226777877764  456999999999


Q ss_pred             cEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEeC-CCCeEEEEecCCcEEEEECCCCcee
Q 036314          142 TISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWP-QQETIYSASWDHSVRTWDVEMGKDL  220 (347)
Q Consensus       142 ~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~l~s~s~dg~v~vwd~~~~~~~  220 (347)
                      +|.+|....+....                         .+...+-+++.+++. +|.+++.||.|-.|++-++.+....
T Consensus        77 tv~~y~fps~~~~~-------------------------iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~  131 (933)
T KOG1274|consen   77 TVLRYKFPSGEEDT-------------------------ILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQE  131 (933)
T ss_pred             eEEEeeCCCCCccc-------------------------eeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchh
Confidence            99999887654321                         122234567888875 6789999999999999999887776


Q ss_pred             eeeee-CeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEe----cCC-CCCeeEEEeCCCCCeEEEEEeCC
Q 036314          221 SDIFC-GKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQF----SSH-NSWISACKWHNKSWFHLISASYD  294 (347)
Q Consensus       221 ~~~~~-~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~----~~h-~~~v~~v~~s~~~~~~l~s~s~D  294 (347)
                      ..+.. ..++.+++++|. +.++|+.+-||+|++||+....-...+.-+    .-. ...+..++|+|+++. |+..+.|
T Consensus       132 ~~lrgh~apVl~l~~~p~-~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~-la~~~~d  209 (933)
T KOG1274|consen  132 KVLRGHDAPVLQLSYDPK-GNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGT-LAVPPVD  209 (933)
T ss_pred             eeecccCCceeeeeEcCC-CCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCe-EEeeccC
Confidence            66654 457999999765 568999999999999999753211111111    111 234577899999875 7778889


Q ss_pred             CcEEEEEcCCCccceeecC--CCCeEEEEeecC-CCEEEEccCCceEEEeecc
Q 036314          295 GKVMLWDLRTAWPLSVIDS--HKDKVLCADWWR-GDSVISGGVDSKLCVSSGV  344 (347)
Q Consensus       295 ~~i~lwd~~~~~~~~~~~~--h~~~v~~~~~~~-~~~l~s~s~D~~v~vw~~~  344 (347)
                      +.|++|+...++....+..  |...+.++.|+| |.|||+++.||-|.||+.-
T Consensus       210 ~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~  262 (933)
T KOG1274|consen  210 NTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVD  262 (933)
T ss_pred             CeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecc
Confidence            9999999998887777643  334478899985 9999999999999999864

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.84  E-value=5.6e-19  Score=150.26  Aligned_cols=284  Identities=21%  Similarity=0.310  Sum_probs=197.6

Q ss_pred             CCceeeccCC-CC-CEEEEEecCCeEEEEcC-----CC-----eEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCc
Q 036314           24 DDWVSAVDGS-NP-GFILTGCYDNLGRVWKA-----GG-----VCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQT   91 (347)
Q Consensus        24 ~~~v~~~~~~-~~-~~l~sg~~d~~i~iw~~-----~~-----~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~   91 (347)
                      ..+|..+.|- ++ +.|||||.|..||+|..     .+     .....|..|+..|+.+.|+|.+.    .||||+++|+
T Consensus        13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~ge----lLASg~D~g~   88 (434)
T KOG1009|consen   13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGE----LLASGGDGGE   88 (434)
T ss_pred             CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcC----eeeecCCCce
Confidence            3667888876 33 38999999999999964     12     12456889999999999999553    7999999999


Q ss_pred             EEEEeccccc-------cccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeecc
Q 036314           92 LRLWKFDAEE-------LVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRK  164 (347)
Q Consensus        92 v~~wd~~~~~-------~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~  164 (347)
                      |.+|......       .....+.+...+.+++|...|..++|++++.++++++.|.++++||+..+             
T Consensus        89 v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G-------------  155 (434)
T KOG1009|consen   89 VFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAG-------------  155 (434)
T ss_pred             EEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccc-------------
Confidence            9999876211       11112346667788999999999999999999999999999999999764             


Q ss_pred             CCCccccccccccccccccCCccceEEEEe-CCCCeEEEEecCCcEEEEECCCCceeeeee-------------------
Q 036314          165 GNNQVEEPQLEGEAISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIF-------------------  224 (347)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~-------------------  224 (347)
                                  .....+..|...+..++| |-++++++-+.|+..+.+.+.....+....                   
T Consensus       156 ------------~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rL  223 (434)
T KOG1009|consen  156 ------------QLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRL  223 (434)
T ss_pred             ------------eeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeee
Confidence                        345567788899999999 567788888888877776654433222111                   


Q ss_pred             -eCe----eeEEEEeeCCCCcEEEEecC---------CCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCC------
Q 036314          225 -CGK----ALNCIDIGGEGSALIAAGGS---------DPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKS------  284 (347)
Q Consensus       225 -~~~----~~~~~~~~~~~~~~la~~~~---------d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~------  284 (347)
                       +..    -...+.|.|++ .++++...         -+..++|+-..  ..+|...+.+....+..++|+|--      
T Consensus       224 fhDeTlksFFrRlsfTPdG-~llvtPag~~~~g~~~~~n~tYvfsrk~--l~rP~~~lp~~~k~~lavr~~pVy~elrp~  300 (434)
T KOG1009|consen  224 FHDETLKSFFRRLSFTPDG-SLLVTPAGLFKVGGGVFRNTSYVFSRKD--LKRPAARLPSPKKPALAVRFSPVYYELRPL  300 (434)
T ss_pred             eecCchhhhhhhcccCCCC-cEEEcccceeeeCCceeeceeEeecccc--ccCceeecCCCCcceEEEEeeeeEEEeccc
Confidence             110    11234565443 45444211         13445665332  234566777777777777776531      


Q ss_pred             -----------CeEEEEEeCCCcEEEEEcCCCccceee-cCCCCeEEEEeecC-CCEEEEccCCceEEE
Q 036314          285 -----------WFHLISASYDGKVMLWDLRTAWPLSVI-DSHKDKVLCADWWR-GDSVISGGVDSKLCV  340 (347)
Q Consensus       285 -----------~~~l~s~s~D~~i~lwd~~~~~~~~~~-~~h~~~v~~~~~~~-~~~l~s~s~D~~v~v  340 (347)
                                 +..+|.++. ..|.+||..+.+++... .-|-..++.++|++ |..|+..|.||-+.+
T Consensus       301 ~~~~~~~~lpyrlvfaiAt~-~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~  368 (434)
T KOG1009|consen  301 SSEKFLFVLPYRLVFAIATK-NSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSL  368 (434)
T ss_pred             cccccccccccceEEEEeec-ceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEE
Confidence                       112344443 57999999988887755 34778999999984 777888899987644

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.84  E-value=5.5e-19  Score=146.59  Aligned_cols=290  Identities=18%  Similarity=0.208  Sum_probs=198.4

Q ss_pred             CCCcCCceeeccCC------CCCEEEEEecCCeEEEEcCC--C--eEEEE-ee-ccCCceEEEEEeecCCCceEEEEEcc
Q 036314           20 PSLHDDWVSAVDGS------NPGFILTGCYDNLGRVWKAG--G--VCTHI-LE-GHCGAVSSVNIIKSDGLKYVTVATAS   87 (347)
Q Consensus        20 ~~~h~~~v~~~~~~------~~~~l~sg~~d~~i~iw~~~--~--~~~~~-l~-~h~~~V~~v~~~~~~~~~~~~l~s~s   87 (347)
                      ...|+..|-.++|.      ..+.+||.|.+ ++.+|.-.  +  ..++. .. .|......++|+-+.....-+||.|+
T Consensus        34 ~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~-rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G  112 (385)
T KOG1034|consen   34 KEDHNKPIFGVAFNSFLGCDEPQVFATVGGN-RVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGG  112 (385)
T ss_pred             hccCCCccceeeeehhcCCCCCceEEEeCCc-EEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeec
Confidence            44688889988864      23577777654 67777643  2  12222 22 37778888999875543345788888


Q ss_pred             CCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCC-CEEEEeeCCCcEEEEecCCCCCCCccceeeeccCC
Q 036314           88 KDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSG-NMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGN  166 (347)
Q Consensus        88 ~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~-~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~  166 (347)
                      .-|.||+.|+.++++         ...+.+|...|+.+.|.|+. ++++++|.|.+||+|++++..+.            
T Consensus       113 ~~GvIrVid~~~~~~---------~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv------------  171 (385)
T KOG1034|consen  113 YLGVIRVIDVVSGQC---------SKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCV------------  171 (385)
T ss_pred             ceeEEEEEecchhhh---------ccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEE------------
Confidence            999999999987654         34678999999999999986 68899999999999999875331            


Q ss_pred             CccccccccccccccccCCccceEEEEeC-CCCeEEEEecCCcEEEEECCCCceeeeeee--------------------
Q 036314          167 NQVEEPQLEGEAISTLVGHTQCVSSVVWP-QQETIYSASWDHSVRTWDVEMGKDLSDIFC--------------------  225 (347)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~--------------------  225 (347)
                                -.+.-+.||.+.|.++-|+ ++.+|+|++.|.++++|++...+-...+..                    
T Consensus       172 ----------~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~f  241 (385)
T KOG1034|consen  172 ----------AVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHF  241 (385)
T ss_pred             ----------EEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccc
Confidence                      0123457899999999985 788999999999999999974322111110                    


Q ss_pred             ---------CeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCC-C------CCCC----eEEecCCCCCeeEE--EeCCC
Q 036314          226 ---------GKALNCIDIGGEGSALIAAGGSDPILRIWDPRKP-G------TSAP----VFQFSSHNSWISAC--KWHNK  283 (347)
Q Consensus       226 ---------~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~-~------~~~~----~~~~~~h~~~v~~v--~~s~~  283 (347)
                               ...+.|+.|-   +.++++-+-++.|..|-+.+- +      ++..    ..++.-....|+-+  +|+|-
T Consensus       242 p~fst~diHrnyVDCvrw~---gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~  318 (385)
T KOG1034|consen  242 PDFSTTDIHRNYVDCVRWF---GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPW  318 (385)
T ss_pred             ccccccccccchHHHHHHH---hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHH
Confidence                     0111222221   236777778899999976211 1      1111    12222223334444  44554


Q ss_pred             CCeEEEEEeCCCcEEEEEcCCCccce--eecCC--CCeEEEEeec-CCCEEEEccCCceEEEeeccc
Q 036314          284 SWFHLISASYDGKVMLWDLRTAWPLS--VIDSH--KDKVLCADWW-RGDSVISGGVDSKLCVSSGVS  345 (347)
Q Consensus       284 ~~~~l~s~s~D~~i~lwd~~~~~~~~--~~~~h--~~~v~~~~~~-~~~~l~s~s~D~~v~vw~~~~  345 (347)
                      . .+||.|...|.|.+||++..++..  ++..+  ...|+-.+|+ +|..|+....|++|.-|+-++
T Consensus       319 ~-~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv~  384 (385)
T KOG1034|consen  319 Q-KMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRVS  384 (385)
T ss_pred             H-HHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEeec
Confidence            4 368999999999999999876632  33222  3568888998 677888999999999998654

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.83  E-value=2.5e-20  Score=171.03  Aligned_cols=276  Identities=21%  Similarity=0.337  Sum_probs=198.1

Q ss_pred             CCCcCCceeeccCC-CCCEEEEEecCCeEEEEcCC-CeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEec
Q 036314           20 PSLHDDWVSAVDGS-NPGFILTGCYDNLGRVWKAG-GVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKF   97 (347)
Q Consensus        20 ~~~h~~~v~~~~~~-~~~~l~sg~~d~~i~iw~~~-~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~   97 (347)
                      +.+|.+.|.|+.|. .+.+++||+.|..++||... +.|++...||++.++.++.+..    ..+++++|.|..||+|.+
T Consensus       186 LlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~----n~~iaaaS~D~vIrvWrl  261 (1113)
T KOG0644|consen  186 LLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSN----NTMIAAASNDKVIRVWRL  261 (1113)
T ss_pred             HHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchh----hhhhhhcccCceEEEEec
Confidence            55899999999997 57799999999999999864 6789999999999999998763    247899999999999999


Q ss_pred             cccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecC-CCCCCCccceeeeccCCCccccccccc
Q 036314           98 DAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTN-DSDAAGNQVSIKKRKGNNQVEEPQLEG  176 (347)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (347)
                      ..+.         ++..+.+|+++|++++|+|-.    +.+.||++++||.. ....  -...           -.    
T Consensus       262 ~~~~---------pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~--y~pr-----------p~----  311 (1113)
T KOG0644|consen  262 PDGA---------PVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRI--YVPR-----------PL----  311 (1113)
T ss_pred             CCCc---------hHHHHhccccceeeeccCccc----cCCCCCceEeccccccccc--cCCC-----------CC----
Confidence            8764         455789999999999999964    78999999999976 1100  0000           00    


Q ss_pred             cccccccCCccceEEEEe-CCCCeEEEEecCCcEEEEECCCCceeeeeeeCeeeEEEEeeCCCCcEEEEecCCCcEEEEe
Q 036314          177 EAISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEGSALIAAGGSDPILRIWD  255 (347)
Q Consensus       177 ~~~~~~~~h~~~v~~~~~-~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd  255 (347)
                          .+.+ .+-+.++.+ ..+..+++++.|+.-..|.......-.     ..+.-+...++-....+++-.+-.+++|+
T Consensus       312 ----~~~~-~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~-----~~lif~t~ssd~~~~~~~ar~~~~~~vwn  381 (1113)
T KOG0644|consen  312 ----KFTE-KDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRS-----NLLIFVTRSSDLSSIVVTARNDHRLCVWN  381 (1113)
T ss_pred             ----Cccc-ccceeeeeccccccccccccCCcccccchhhHhhhhc-----cceEEEeccccccccceeeeeeeEeeeee
Confidence                0000 122333433 456678999999998888764321110     00111111122223445556677888998


Q ss_pred             CCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceee-cCCCCeEEEEeec-CCCEEEEcc
Q 036314          256 PRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVI-DSHKDKVLCADWW-RGDSVISGG  333 (347)
Q Consensus       256 ~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~-~~h~~~v~~~~~~-~~~~l~s~s  333 (347)
                      +-..   .....+.+|.+++..+.++|-+.....+++.||.+.|||+-.|.+++.. .+| +++....|| +|+.++-..
T Consensus       382 l~~g---~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh-~kl~d~kFSqdgts~~lsd  457 (1113)
T KOG0644|consen  382 LYTG---QLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGH-GKLVDGKFSQDGTSIALSD  457 (1113)
T ss_pred             cccc---hhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeeccc-ceeeccccCCCCceEecCC
Confidence            7642   2356778999999999999999888889999999999999999888765 455 566666998 566666655


Q ss_pred             CCceEEEeec
Q 036314          334 VDSKLCVSSG  343 (347)
Q Consensus       334 ~D~~v~vw~~  343 (347)
                      .-|.+.|-..
T Consensus       458 ~hgql~i~g~  467 (1113)
T KOG0644|consen  458 DHGQLYILGT  467 (1113)
T ss_pred             CCCceEEecc
Confidence            5666666543

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.83  E-value=2.4e-18  Score=140.67  Aligned_cols=280  Identities=20%  Similarity=0.251  Sum_probs=190.6

Q ss_pred             eeeccCC----CCCEEEEEec----CCeEEEEcC---CCeEEE-EeeccCCceEEEEEeecCC-CceEEEEEccCCCcEE
Q 036314           27 VSAVDGS----NPGFILTGCY----DNLGRVWKA---GGVCTH-ILEGHCGAVSSVNIIKSDG-LKYVTVATASKDQTLR   93 (347)
Q Consensus        27 v~~~~~~----~~~~l~sg~~----d~~i~iw~~---~~~~~~-~l~~h~~~V~~v~~~~~~~-~~~~~l~s~s~Dg~v~   93 (347)
                      +-+++++    ...+||-||.    .+.|.|-.+   .+..+. .-..|.-+++.+.|.|+.. ..-..|||+++  .+|
T Consensus        47 lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~D--~LR  124 (364)
T KOG0290|consen   47 LYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSSD--FLR  124 (364)
T ss_pred             eeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhcccC--eEE
Confidence            4455555    2348999985    456766643   233222 1236889999999998652 12234555443  799


Q ss_pred             EEeccccccccCccccceeeeeeccccceEEEEEeC-CCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccc
Q 036314           94 LWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAET-SGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEP  172 (347)
Q Consensus        94 ~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~-~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  172 (347)
                      +|.+...+-....+..-....-..|.+++++..|+. +-+++.++|-|-|..|||++.+..                   
T Consensus       125 lWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~-------------------  185 (364)
T KOG0290|consen  125 LWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVS-------------------  185 (364)
T ss_pred             EEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccc-------------------
Confidence            999874221000000000011234677888888865 447899999999999999986411                   


Q ss_pred             cccccccccccCCccceEEEEeCC--CCeEEEEecCCcEEEEECCCCceeeeeee----CeeeEEEEeeCCCCcEEEEe-
Q 036314          173 QLEGEAISTLVGHTQCVSSVVWPQ--QETIYSASWDHSVRTWDVEMGKDLSDIFC----GKALNCIDIGGEGSALIAAG-  245 (347)
Q Consensus       173 ~~~~~~~~~~~~h~~~v~~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~~----~~~~~~~~~~~~~~~~la~~-  245 (347)
                         +.....+..|.+.|..++|..  -+.++|++.||.+|++|++.-+.-.-+..    ..+.-.+++...+.+++|+- 
T Consensus       186 ---~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~  262 (364)
T KOG0290|consen  186 ---GTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFA  262 (364)
T ss_pred             ---cceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhh
Confidence               122346778999999999975  35699999999999999987542211221    23455677777777777664 


Q ss_pred             cCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCc------cceeecCCCCeEE
Q 036314          246 GSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAW------PLSVIDSHKDKVL  319 (347)
Q Consensus       246 ~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~------~~~~~~~h~~~v~  319 (347)
                      .....|.|.|+|.+.  .++..+.+|...|+.++|.|....+|.||+.|..+.+||+...-      ++-.+. -+++|.
T Consensus       263 ~dS~~V~iLDiR~P~--tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~-a~~EVN  339 (364)
T KOG0290|consen  263 MDSNKVVILDIRVPC--TPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT-AGGEVN  339 (364)
T ss_pred             cCCceEEEEEecCCC--cceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh-ccceee
Confidence            445789999999764  46889999999999999999999999999999999999997531      222233 356889


Q ss_pred             EEeecC--CCEEEEcc
Q 036314          320 CADWWR--GDSVISGG  333 (347)
Q Consensus       320 ~~~~~~--~~~l~s~s  333 (347)
                      -+.|++  ++.++-+.
T Consensus       340 qi~Ws~~~~Dwiai~~  355 (364)
T KOG0290|consen  340 QIQWSSSQPDWIAICF  355 (364)
T ss_pred             eeeecccCCCEEEEEe
Confidence            999974  55666655

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.83  E-value=1e-18  Score=148.26  Aligned_cols=203  Identities=18%  Similarity=0.243  Sum_probs=146.7

Q ss_pred             cCCCCCcCCceeeccCC--CCCEEEEEecCCeEEEEcCC--C------eEEEEeeccCCceEEEEEeecCCCceEEEEEc
Q 036314           17 EEEPSLHDDWVSAVDGS--NPGFILTGCYDNLGRVWKAG--G------VCTHILEGHCGAVSSVNIIKSDGLKYVTVATA   86 (347)
Q Consensus        17 ~~~~~~h~~~v~~~~~~--~~~~l~sg~~d~~i~iw~~~--~------~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~   86 (347)
                      .....||++.|..+++.  +++.|||||.|.+|+||++.  +      ..+..|.||+..|..|.|+|...   ..|+|+
T Consensus        74 ~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~---NVLlsa  150 (472)
T KOG0303|consen   74 YPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAP---NVLLSA  150 (472)
T ss_pred             CCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccch---hhHhhc
Confidence            33456999999999976  67899999999999999863  1      34678999999999999999654   378999


Q ss_pred             cCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCC
Q 036314           87 SKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGN  166 (347)
Q Consensus        87 s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~  166 (347)
                      +.|.+|.+|++.+++.         +-++. |.+-|.++.|+.||.++++.+.|..|||||...+..             
T Consensus       151 g~Dn~v~iWnv~tgea---------li~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~-------------  207 (472)
T KOG0303|consen  151 GSDNTVSIWNVGTGEA---------LITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTV-------------  207 (472)
T ss_pred             cCCceEEEEeccCCce---------eeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcE-------------
Confidence            9999999999998763         23444 999999999999999999999999999999876432             


Q ss_pred             CccccccccccccccccCCcc--ceEEEEeCCCCeEEEEe----cCCcEEEEECCCCcee---eeeeeCeeeEEEEeeCC
Q 036314          167 NQVEEPQLEGEAISTLVGHTQ--CVSSVVWPQQETIYSAS----WDHSVRTWDVEMGKDL---SDIFCGKALNCIDIGGE  237 (347)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~h~~--~v~~~~~~~~~~l~s~s----~dg~v~vwd~~~~~~~---~~~~~~~~~~~~~~~~~  237 (347)
                                  +..-.+|.+  +.+.+...++. +++.+    .++.+.+||...-+..   ..+..++.+.---+.++
T Consensus       208 ------------v~e~~~heG~k~~Raifl~~g~-i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~d  274 (472)
T KOG0303|consen  208 ------------VSEGVAHEGAKPARAIFLASGK-IFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPD  274 (472)
T ss_pred             ------------eeecccccCCCcceeEEeccCc-eeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCC
Confidence                        222234443  23434334555 55554    4567999987543322   22222333322223344


Q ss_pred             CCcEEEEecCCCcEEEEeCCC
Q 036314          238 GSALIAAGGSDPILRIWDPRK  258 (347)
Q Consensus       238 ~~~~la~~~~d~~i~iwd~~~  258 (347)
                      .+-+.+.|-.|+.||.|.+..
T Consensus       275 t~ivYl~GKGD~~IRYyEit~  295 (472)
T KOG0303|consen  275 TSIVYLCGKGDSSIRYFEITN  295 (472)
T ss_pred             CCEEEEEecCCcceEEEEecC
Confidence            444456777899999999864

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.83  E-value=1e-18  Score=155.26  Aligned_cols=269  Identities=21%  Similarity=0.307  Sum_probs=183.5

Q ss_pred             eEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCC-E
Q 036314           55 VCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGN-M  133 (347)
Q Consensus        55 ~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~-~  133 (347)
                      .|...+.||++.|.+|...+.+    ..|++|+.||+||||.+.++.++         .++. ..+.|.||+|+|.++ .
T Consensus       391 ~~~lvyrGHtg~Vr~iSvdp~G----~wlasGsdDGtvriWEi~TgRcv---------r~~~-~d~~I~~vaw~P~~~~~  456 (733)
T KOG0650|consen  391 RCALVYRGHTGLVRSISVDPSG----EWLASGSDDGTVRIWEIATGRCV---------RTVQ-FDSEIRSVAWNPLSDLC  456 (733)
T ss_pred             eeeeeEeccCCeEEEEEecCCc----ceeeecCCCCcEEEEEeecceEE---------EEEe-ecceeEEEEecCCCCce
Confidence            4566799999999999998843    47999999999999999988643         3332 356799999999875 3


Q ss_pred             EEEeeCCCcEEEEecCCCCC--CC-ccceeeeccCCCc----cccc------cccccccccccCCccceEEEEeC-CCCe
Q 036314          134 VCSGSWDCTISLWRTNDSDA--AG-NQVSIKKRKGNNQ----VEEP------QLEGEAISTLVGHTQCVSSVVWP-QQET  199 (347)
Q Consensus       134 l~sgs~Dg~I~iwd~~~~~~--~~-~~~~~~~~~~~~~----~~~~------~~~~~~~~~~~~h~~~v~~~~~~-~~~~  199 (347)
                      ++.+..+..+.|-+..-+..  .+ ..-..........    +..+      +.... ++....|.+.|..+.|+ .|.+
T Consensus       457 vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~-v~~~I~~~k~i~~vtWHrkGDY  535 (733)
T KOG0650|consen  457 VLAVAVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKG-VCIVIKHPKSIRQVTWHRKGDY  535 (733)
T ss_pred             eEEEEecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccc-eEEEEecCCccceeeeecCCce
Confidence            34444454566654321100  00 0000000000000    0000      00111 23344578889999995 7889


Q ss_pred             EEEEecC---CcEEEEECCCCceeeeee-eCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCe
Q 036314          200 IYSASWD---HSVRTWDVEMGKDLSDIF-CGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWI  275 (347)
Q Consensus       200 l~s~s~d---g~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v  275 (347)
                      |++...+   ..|.|+++........+. ....+.++.|+|....+|++.  ...|+|||+.+.   ..+..+.....+|
T Consensus       536 latV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT--q~~vRiYdL~kq---elvKkL~tg~kwi  610 (733)
T KOG0650|consen  536 LATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVAT--QRSVRIYDLSKQ---ELVKKLLTGSKWI  610 (733)
T ss_pred             EEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEe--ccceEEEehhHH---HHHHHHhcCCeee
Confidence            9887654   468889987654443332 234578899988776665543  578999998752   2244455566789


Q ss_pred             eEEEeCCCCCeEEEEEeCCCcEEEEEcCCC-ccceeecCCCCeEEEEeecCC-CEEEEccCCceEEEeecc
Q 036314          276 SACKWHNKSWFHLISASYDGKVMLWDLRTA-WPLSVIDSHKDKVLCADWWRG-DSVISGGVDSKLCVSSGV  344 (347)
Q Consensus       276 ~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~-~~~~~~~~h~~~v~~~~~~~~-~~l~s~s~D~~v~vw~~~  344 (347)
                      ..++.+|.|.. |+.++.|+.+..+|+.-+ ++.+++..|...|++|+|++. ..||||+.||++.|+=|.
T Consensus       611 S~msihp~GDn-li~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~  680 (733)
T KOG0650|consen  611 SSMSIHPNGDN-LILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGM  680 (733)
T ss_pred             eeeeecCCCCe-EEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeee
Confidence            99999998876 888999999999999754 678889999999999999864 379999999999998653

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.82  E-value=5e-19  Score=147.52  Aligned_cols=192  Identities=18%  Similarity=0.295  Sum_probs=137.8

Q ss_pred             EEEEccCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeC--CCCEEEEeeCCCcEEEEecCCCCCCCccce
Q 036314           82 TVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAET--SGNMVCSGSWDCTISLWRTNDSDAAGNQVS  159 (347)
Q Consensus        82 ~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~--~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~  159 (347)
                      .+|++-..|+||+||..+++         .+..+.+|...++.++|..  ....+.+++.||+||+||++.....     
T Consensus        42 ~vav~lSngsv~lyd~~tg~---------~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~-----  107 (376)
T KOG1188|consen   42 AVAVSLSNGSVRLYDKGTGQ---------LLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAES-----  107 (376)
T ss_pred             eEEEEecCCeEEEEeccchh---------hhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhh-----
Confidence            47788888999999988765         3456778888888898865  4578999999999999999864321     


Q ss_pred             eeeccCCCccccccccccccccccCCc-cceEEEEeC-CCCeEEEE----ecCCcEEEEECCCCce-eeeee--eCeeeE
Q 036314          160 IKKRKGNNQVEEPQLEGEAISTLVGHT-QCVSSVVWP-QQETIYSA----SWDHSVRTWDVEMGKD-LSDIF--CGKALN  230 (347)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~-~~~~l~s~----s~dg~v~vwd~~~~~~-~~~~~--~~~~~~  230 (347)
                                        ....+.+|. .+..++... .++.+++|    ..|-.|.+||+|..+. +..+.  +...++
T Consensus       108 ------------------a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT  169 (376)
T KOG1188|consen  108 ------------------ARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVT  169 (376)
T ss_pred             ------------------hheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcce
Confidence                              112223333 233444433 33445544    2344688999998766 55444  344799


Q ss_pred             EEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCC
Q 036314          231 CIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTA  305 (347)
Q Consensus       231 ~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~  305 (347)
                      ++.|+|.+.+++++|+-||-|.+||+..+....++...-.|.+.|.++.|..++...|.+-+...+..+|+++.+
T Consensus       170 ~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~  244 (376)
T KOG1188|consen  170 QLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDG  244 (376)
T ss_pred             eEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCC
Confidence            999999999999999999999999998654433444444577778888898887556777777888888877654

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.82  E-value=1.2e-18  Score=142.28  Aligned_cols=234  Identities=19%  Similarity=0.348  Sum_probs=163.0

Q ss_pred             cCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEE-EEeeCC-------CcEEEEecCCCCCCCccc
Q 036314           87 SKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMV-CSGSWD-------CTISLWRTNDSDAAGNQV  158 (347)
Q Consensus        87 s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l-~sgs~D-------g~I~iwd~~~~~~~~~~~  158 (347)
                      -.|++|.+-+++.+.-      ....+.|..|-+.|..++-+|..+.+ +|+-.|       ..+.||.++.......  
T Consensus        37 K~dNqVhll~~d~e~s------~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~--  108 (370)
T KOG1007|consen   37 KEDNQVHLLRLDSEGS------ELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSN--  108 (370)
T ss_pred             CCcceeEEEEecCccc------hhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccc--
Confidence            3567788777764321      11224567788899999888876544 444221       3477898865321100  


Q ss_pred             eeeeccCCCcccccccccccccccc-CCccceEEEEe-CCCCeEEEEecCCcEEEEECCCCcee-eeeee------Ceee
Q 036314          159 SIKKRKGNNQVEEPQLEGEAISTLV-GHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDL-SDIFC------GKAL  229 (347)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~-~~~~~l~s~s~dg~v~vwd~~~~~~~-~~~~~------~~~~  229 (347)
                                    ..+-+++..+. .+-+.|.++.| |++..+++.. |..|.+|++..+..+ ..+..      ....
T Consensus       109 --------------~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~f  173 (370)
T KOG1007|consen  109 --------------SSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSF  173 (370)
T ss_pred             --------------cchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeeccccccccccee
Confidence                          00112233333 34457899998 7788888876 889999999876552 22221      1234


Q ss_pred             EEEEeeC-CCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCC-cc
Q 036314          230 NCIDIGG-EGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTA-WP  307 (347)
Q Consensus       230 ~~~~~~~-~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~-~~  307 (347)
                      ..-.++| .+++.+++. .|+++..||+|....  ....-..|...|.++.|+|+..+.||||+.||.|++||.|.. .+
T Consensus       174 tsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~--~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~p  250 (370)
T KOG1007|consen  174 TSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKK--NNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFP  250 (370)
T ss_pred             cccccCCCCccceEEEe-CCCcEEEEEccchhh--hcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCcc
Confidence            4556665 456666654 589999999985332  222335788999999999999999999999999999999874 66


Q ss_pred             ceeecCCCCeEEEEeecC--CCEEEEccCCceEEEeecccC
Q 036314          308 LSVIDSHKDKVLCADWWR--GDSVISGGVDSKLCVSSGVSI  346 (347)
Q Consensus       308 ~~~~~~h~~~v~~~~~~~--~~~l~s~s~D~~v~vw~~~~~  346 (347)
                      ++.+.+|.--|++|.|+|  ++.+.|||.|..|.+|--.||
T Consensus       251 v~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~sv  291 (370)
T KOG1007|consen  251 VQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSV  291 (370)
T ss_pred             ccccCCCceEEEEEEecCccceEEEecCCCceeEEEecccc
Confidence            889999999999999986  678999999999999976654

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.81  E-value=1.1e-18  Score=140.76  Aligned_cols=270  Identities=16%  Similarity=0.236  Sum_probs=177.4

Q ss_pred             EEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeeee-ccccceEEEEEeCCCCEEE
Q 036314           57 THILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILR-GHKASVHSIAAETSGNMVC  135 (347)
Q Consensus        57 ~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~-~h~~~V~~v~~s~~~~~l~  135 (347)
                      ...|.+|.+.|+++-|-..+     +|.+|..-|.|++|++++..         ....++ .|...|+.+..-|+ ..+.
T Consensus         7 ~fvLRp~~~~v~s~~fqa~~-----rL~sg~~~G~V~~w~lqt~r---------~~~~~r~~g~~~it~lq~~p~-d~l~   71 (323)
T KOG0322|consen    7 FFVLRPHSSSVTSVLFQANE-----RLMSGLSVGIVKMWVLQTER---------DLPLIRLFGRLFITNLQSIPN-DSLD   71 (323)
T ss_pred             eeEeccccchheehhhccch-----hhhcccccceEEEEEeecCc---------cchhhhhhccceeeceeecCC-cchh
Confidence            34677999999999886533     48899999999999998754         233455 46778888876665 6788


Q ss_pred             EeeCCCcEEEEecCCCCCCCcc-----------ceeeeccCCC-c-ccccc--------cc-ccccccc------cCCcc
Q 036314          136 SGSWDCTISLWRTNDSDAAGNQ-----------VSIKKRKGNN-Q-VEEPQ--------LE-GEAISTL------VGHTQ  187 (347)
Q Consensus       136 sgs~Dg~I~iwd~~~~~~~~~~-----------~~~~~~~~~~-~-~~~~~--------~~-~~~~~~~------~~h~~  187 (347)
                      +-++|+.+.+|++.........           .+......+. . ...+.        .+ +...+..      .+..+
T Consensus        72 tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klg  151 (323)
T KOG0322|consen   72 TQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLG  151 (323)
T ss_pred             hcCCCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccC
Confidence            8999999999998753211000           0000000000 0 00000        00 0000110      11223


Q ss_pred             ceEEEEeC--CCC--eEEEEecCCcEEEEECCCCceeeeee-----------eCeeeEEEEeeCCCCcEEEEecCCCcEE
Q 036314          188 CVSSVVWP--QQE--TIYSASWDHSVRTWDVEMGKDLSDIF-----------CGKALNCIDIGGEGSALIAAGGSDPILR  252 (347)
Q Consensus       188 ~v~~~~~~--~~~--~l~s~s~dg~v~vwd~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~la~~~~d~~i~  252 (347)
                      .+.+..++  .+.  .++.|..+|.+.+||+.++..+..+.           +..++..+++.+.- ..=++|+.+..+.
T Consensus       152 svmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~-~rGisgga~dkl~  230 (323)
T KOG0322|consen  152 SVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSC-DRGISGGADDKLV  230 (323)
T ss_pred             ceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhh-cCCcCCCccccce
Confidence            44454443  233  36788999999999999875443332           12356666665321 1225677888899


Q ss_pred             EEeCCCCCCCCC-eEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecCCCCeEEEEeecCC-CEEE
Q 036314          253 IWDPRKPGTSAP-VFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKVLCADWWRG-DSVI  330 (347)
Q Consensus       253 iwd~~~~~~~~~-~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~-~~l~  330 (347)
                      .|.+.......+ .....-.+-.|..+..-||+. .|||++.|++||||..++..++..+..|.+.|.+++|+|+ ..||
T Consensus       231 ~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~K-IlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmA  309 (323)
T KOG0322|consen  231 MYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGK-ILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMA  309 (323)
T ss_pred             eeeeccccCcccccceEEecCCCccceEEccCCc-EEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhh
Confidence            998864311111 112222334577788889985 6999999999999999999999999999999999999987 6899


Q ss_pred             EccCCceEEEeec
Q 036314          331 SGGVDSKLCVSSG  343 (347)
Q Consensus       331 s~s~D~~v~vw~~  343 (347)
                      ++|+|++|.+|..
T Consensus       310 aaskD~rISLWkL  322 (323)
T KOG0322|consen  310 AASKDARISLWKL  322 (323)
T ss_pred             hccCCceEEeeec
Confidence            9999999999973

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.81  E-value=2.5e-17  Score=148.51  Aligned_cols=239  Identities=18%  Similarity=0.254  Sum_probs=179.3

Q ss_pred             cCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeeeecc-ccceEEEEEeCCCCEEEEeeCCC
Q 036314           63 HCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGH-KASVHSIAAETSGNMVCSGSWDC  141 (347)
Q Consensus        63 h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h-~~~V~~v~~s~~~~~l~sgs~Dg  141 (347)
                      -...|.+++++.+.+    .||.+-.||.|.+|++..+=        -....+.++ ...|-+++|. ++..|+|.+.+|
T Consensus        24 ~Ps~I~slA~s~kS~----~lAvsRt~g~IEiwN~~~~w--------~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg   90 (691)
T KOG2048|consen   24 KPSEIVSLAYSHKSN----QLAVSRTDGNIEIWNLSNNW--------FLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSG   90 (691)
T ss_pred             eccceEEEEEeccCC----ceeeeccCCcEEEEccCCCc--------eeeEEEecCCCCceeeEEEc-cCCeEEeecCCc
Confidence            346689999998654    58999999999999987542        223345555 4558899999 566788999999


Q ss_pred             cEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEe-CCCCeEEEEecCCcEEEEECCCCcee
Q 036314          142 TISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDL  220 (347)
Q Consensus       142 ~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~l~s~s~dg~v~vwd~~~~~~~  220 (347)
                      +|.-||+.+..                         ..+.+......|++++. |.+..++.|+.||.+..++...+...
T Consensus        91 ~i~EwDl~~lk-------------------------~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~  145 (691)
T KOG2048|consen   91 SITEWDLHTLK-------------------------QKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKIT  145 (691)
T ss_pred             eEEEEecccCc-------------------------eeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEE
Confidence            99999987642                         23334444567888886 55667888889997777777666544


Q ss_pred             eeeee---CeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeE--EecC----CCCCeeEEEeCCCCCeEEEEE
Q 036314          221 SDIFC---GKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVF--QFSS----HNSWISACKWHNKSWFHLISA  291 (347)
Q Consensus       221 ~~~~~---~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~--~~~~----h~~~v~~v~~s~~~~~~l~s~  291 (347)
                      .....   ...+-+++|.+.+ ..+++|+.||.|++||...+... .+.  .+.+    ..--|+++.|-.++  .|++|
T Consensus       146 ~~r~l~rq~sRvLslsw~~~~-~~i~~Gs~Dg~Iriwd~~~~~t~-~~~~~~~d~l~k~~~~iVWSv~~Lrd~--tI~sg  221 (691)
T KOG2048|consen  146 YKRSLMRQKSRVLSLSWNPTG-TKIAGGSIDGVIRIWDVKSGQTL-HIITMQLDRLSKREPTIVWSVLFLRDS--TIASG  221 (691)
T ss_pred             EEeecccccceEEEEEecCCc-cEEEecccCceEEEEEcCCCceE-EEeeecccccccCCceEEEEEEEeecC--cEEEe
Confidence            33322   2467889997654 46899999999999998764321 111  1111    22247888888776  59999


Q ss_pred             eCCCcEEEEEcCCCccceeecCCCCeEEEEeecC-CCEEEEccCCceEEEeec
Q 036314          292 SYDGKVMLWDLRTAWPLSVIDSHKDKVLCADWWR-GDSVISGGVDSKLCVSSG  343 (347)
Q Consensus       292 s~D~~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~l~s~s~D~~v~vw~~  343 (347)
                      ..-|+|++||...+..++.+..|.+.|.|++-.+ ++++.++|.|+.|.-++-
T Consensus       222 DS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~  274 (691)
T KOG2048|consen  222 DSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSL  274 (691)
T ss_pred             cCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEe
Confidence            9999999999999999999999999999999875 589999999999887654

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.81  E-value=5.7e-19  Score=167.54  Aligned_cols=232  Identities=17%  Similarity=0.344  Sum_probs=174.1

Q ss_pred             CEEEEEecCCeEEEEcCCC-------eEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccc
Q 036314           36 GFILTGCYDNLGRVWKAGG-------VCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKK  108 (347)
Q Consensus        36 ~~l~sg~~d~~i~iw~~~~-------~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~  108 (347)
                      ++||.|..||.|-+||...       ..+..+..|++.|..+.|.+..+   ..||+|++||+|-|||+...+....+. 
T Consensus        81 GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~---nlLASGa~~geI~iWDlnn~~tP~~~~-  156 (1049)
T KOG0307|consen   81 GLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQG---NLLASGADDGEILIWDLNKPETPFTPG-  156 (1049)
T ss_pred             ceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCC---ceeeccCCCCcEEEeccCCcCCCCCCC-
Confidence            5899999999999999632       23566788999999999988654   479999999999999997643111100 


Q ss_pred             cceeeeeeccccceEEEEEeCCC-CEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCC--
Q 036314          109 IRSFKILRGHKASVHSIAAETSG-NMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGH--  185 (347)
Q Consensus       109 ~~~~~~~~~h~~~V~~v~~s~~~-~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h--  185 (347)
                            -..-.+.|.+++|+..- ..|+|++.+|.+-|||++..+.                         +-.+..|  
T Consensus       157 ------~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~p-------------------------ii~ls~~~~  205 (1049)
T KOG0307|consen  157 ------SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKP-------------------------IIKLSDTPG  205 (1049)
T ss_pred             ------CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCc-------------------------ccccccCCC
Confidence                  11235679999998764 6788999999999999975421                         1111111  


Q ss_pred             ccceEEEEeCC-C-CeEEEEecCC---cEEEEECCCCc-eeeeee-eCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCC
Q 036314          186 TQCVSSVVWPQ-Q-ETIYSASWDH---SVRTWDVEMGK-DLSDIF-CGKALNCIDIGGEGSALIAAGGSDPILRIWDPRK  258 (347)
Q Consensus       186 ~~~v~~~~~~~-~-~~l~s~s~dg---~v~vwd~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~  258 (347)
                      ...+..+.|+. + ..++.++.|.   .|.+||+|... .++.+. +...+.+++|++.+..++++++.|+.|..|+...
T Consensus       206 ~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~t  285 (1049)
T KOG0307|consen  206 RMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNT  285 (1049)
T ss_pred             ccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCC
Confidence            13467788853 2 3566666665   48999998643 334443 3457889999998888999999999999999875


Q ss_pred             CCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCC
Q 036314          259 PGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTA  305 (347)
Q Consensus       259 ~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~  305 (347)
                      .   ..+..+....+|+..+.|+|..+..++.++.||.|-|+.+...
T Consensus       286 g---Evl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~  329 (1049)
T KOG0307|consen  286 G---EVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGT  329 (1049)
T ss_pred             c---eEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecC
Confidence            3   2366777788999999999999888999999999999998754

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.81  E-value=8.3e-19  Score=152.43  Aligned_cols=294  Identities=18%  Similarity=0.223  Sum_probs=209.4

Q ss_pred             CCCCcCCceeeccCC-CCCEEEEEecCCeEEEEcC-CCe-EEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEE
Q 036314           19 EPSLHDDWVSAVDGS-NPGFILTGCYDNLGRVWKA-GGV-CTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLW   95 (347)
Q Consensus        19 ~~~~h~~~v~~~~~~-~~~~l~sg~~d~~i~iw~~-~~~-~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~w   95 (347)
                      .+.+|.+.|.+|.|. .+..|+|||.|.+|.+||- .+. .+..-.||...|....|.|..+  ...+++++.||+||+=
T Consensus       137 kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~--d~ti~~~s~dgqvr~s  214 (559)
T KOG1334|consen  137 KLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSG--DRTIVTSSRDGQVRVS  214 (559)
T ss_pred             cccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCC--CcCceeccccCceeee
Confidence            367899999999987 5789999999999999995 343 3444568999999999998554  2468999999999998


Q ss_pred             eccccccccCccccceeeeeeccccceEEEEEeCCC-CEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccc
Q 036314           96 KFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSG-NMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQL  174 (347)
Q Consensus        96 d~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~-~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (347)
                      .+.....      .+..+.+..|.++|+.++.-|+. .-|.|++.|+.++-.|+..........                
T Consensus       215 ~i~~t~~------~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~----------------  272 (559)
T KOG1334|consen  215 EILETGY------VENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFV----------------  272 (559)
T ss_pred             eeccccc------eecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceee----------------
Confidence            7654321      12234466799999999998876 578899999999999987643221110                


Q ss_pred             cccccccccCCcc---ceEEEEe-C-CCCeEEEEecCCcEEEEECCCCce------eeee-----e--eCeeeEEEEeeC
Q 036314          175 EGEAISTLVGHTQ---CVSSVVW-P-QQETIYSASWDHSVRTWDVEMGKD------LSDI-----F--CGKALNCIDIGG  236 (347)
Q Consensus       175 ~~~~~~~~~~h~~---~v~~~~~-~-~~~~l~s~s~dg~v~vwd~~~~~~------~~~~-----~--~~~~~~~~~~~~  236 (347)
                            +-..+..   ....++. | +...+++++.|..+++||.+.-..      +.++     .  ....++|+.++.
T Consensus       273 ------cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh  346 (559)
T KOG1334|consen  273 ------CREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSH  346 (559)
T ss_pred             ------eeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecC
Confidence                  1111111   2344554 3 334689999999999999864321      1111     1  122478899876


Q ss_pred             CCCcEEEEecCCCcEEEEeCCCCCC----------CCCeEEecCCCC--CeeEEEeCCCCCeEEEEEeCCCcEEEEEcCC
Q 036314          237 EGSALIAAGGSDPILRIWDPRKPGT----------SAPVFQFSSHNS--WISACKWHNKSWFHLISASYDGKVMLWDLRT  304 (347)
Q Consensus       237 ~~~~~la~~~~d~~i~iwd~~~~~~----------~~~~~~~~~h~~--~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~  304 (347)
                      .++.++|+ -.|-.|++|......-          ....+.+.||.+  .|..+-|-.....+++|||.=|.|.|||-.+
T Consensus       347 ~~sElLaS-YnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t  425 (559)
T KOG1334|consen  347 DGSELLAS-YNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKT  425 (559)
T ss_pred             Cccceeee-ecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecch
Confidence            66666665 4688899995432111          111123788876  4677776543345799999999999999999


Q ss_pred             CccceeecCCCCeEEEEeecC-CCEEEEccCCceEEEeec
Q 036314          305 AWPLSVIDSHKDKVLCADWWR-GDSVISGGVDSKLCVSSG  343 (347)
Q Consensus       305 ~~~~~~~~~h~~~v~~~~~~~-~~~l~s~s~D~~v~vw~~  343 (347)
                      ++.+.-+++-...|.|+.=+| .-.|||+|.|.-|+||.-
T Consensus       426 ~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP  465 (559)
T KOG1334|consen  426 GEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTP  465 (559)
T ss_pred             hHHHHHhhcccceEeccCCCCCCchhhccCCccceeeecC
Confidence            998888887666888999777 457999999999999973

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.80  E-value=3.7e-17  Score=135.63  Aligned_cols=280  Identities=18%  Similarity=0.214  Sum_probs=186.3

Q ss_pred             eeeccCC-CCCEEEEEecCCeEEEEcCCCeE-------------EEEee-ccCCceEEEEEee---cCCCceEEEEEccC
Q 036314           27 VSAVDGS-NPGFILTGCYDNLGRVWKAGGVC-------------THILE-GHCGAVSSVNIIK---SDGLKYVTVATASK   88 (347)
Q Consensus        27 v~~~~~~-~~~~l~sg~~d~~i~iw~~~~~~-------------~~~l~-~h~~~V~~v~~~~---~~~~~~~~l~s~s~   88 (347)
                      ......+ +|..|++-+.|..+++|+++...             .-.++ ...+.|..-.|-+   ....+..++++.+.
T Consensus        52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr  131 (406)
T KOG2919|consen   52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR  131 (406)
T ss_pred             hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence            3344556 45689999999999999863110             00111 1123455544431   11112346788999


Q ss_pred             CCcEEEEeccccccccCccccceeeeeeccccc---eEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccC
Q 036314           89 DQTLRLWKFDAEELVNHPKKIRSFKILRGHKAS---VHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKG  165 (347)
Q Consensus        89 Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~---V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~  165 (347)
                      |.-|++||..++++-..       .....|.+.   ..+++|+|||.+|+ ++....||++|+..+........      
T Consensus       132 ~~PIh~wdaftG~lraS-------y~~ydh~de~taAhsL~Fs~DGeqlf-aGykrcirvFdt~RpGr~c~vy~------  197 (406)
T KOG2919|consen  132 DQPIHLWDAFTGKLRAS-------YRAYDHQDEYTAAHSLQFSPDGEQLF-AGYKRCIRVFDTSRPGRDCPVYT------  197 (406)
T ss_pred             cCceeeeeccccccccc-------hhhhhhHHhhhhheeEEecCCCCeEe-ecccceEEEeeccCCCCCCcchh------
Confidence            99999999988865321       112234444   36899999999998 56788999999865422111100      


Q ss_pred             CCccccccccccccccccCCccceEEEEeC--CCCeEEEEecCCcEEEEECCCCceeeeeee-CeeeEEEEeeCCCCcEE
Q 036314          166 NNQVEEPQLEGEAISTLVGHTQCVSSVVWP--QQETIYSASWDHSVRTWDVEMGKDLSDIFC-GKALNCIDIGGEGSALI  242 (347)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l  242 (347)
                                 +...-..+..+.+.+++|+  +.+.++.+++..++-||.-....++..+.. +..++.+.+++++..++
T Consensus       198 -----------t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lf  266 (406)
T KOG2919|consen  198 -----------TVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLF  266 (406)
T ss_pred             -----------hhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeec
Confidence                       0001122345678888884  455799999999999987665566555543 34789999988776555


Q ss_pred             EEecCCCcEEEEeCCCCCCCCCeEEecCCCC-CeeEEEe--CCCCCeEEEEEeCCCcEEEEEcCC-CccceeecCCCCeE
Q 036314          243 AAGGSDPILRIWDPRKPGTSAPVFQFSSHNS-WISACKW--HNKSWFHLISASYDGKVMLWDLRT-AWPLSVIDSHKDKV  318 (347)
Q Consensus       243 a~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~-~v~~v~~--s~~~~~~l~s~s~D~~i~lwd~~~-~~~~~~~~~h~~~v  318 (347)
                      .-+-.|.+|-.||+|...  .++..+..|.. .=..|-|  .|++. +|++|+.||.|++||+++ +..+..+..|.+.|
T Consensus       267 sGaRk~dkIl~WDiR~~~--~pv~~L~rhv~~TNQRI~FDld~~~~-~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~v  343 (406)
T KOG2919|consen  267 SGARKDDKILCWDIRYSR--DPVYALERHVGDTNQRILFDLDPKGE-ILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTV  343 (406)
T ss_pred             ccccCCCeEEEEeehhcc--chhhhhhhhccCccceEEEecCCCCc-eeeccCCCccEEEEecCCCCCcccccccccccc
Confidence            444458899999999743  34667777765 3334444  57774 699999999999999998 67788888899999


Q ss_pred             EEEeecC-CCEEEEccC
Q 036314          319 LCADWWR-GDSVISGGV  334 (347)
Q Consensus       319 ~~~~~~~-~~~l~s~s~  334 (347)
                      ..|+++| -..+|++|.
T Consensus       344 NgvslnP~mpilatssG  360 (406)
T KOG2919|consen  344 NGVSLNPIMPILATSSG  360 (406)
T ss_pred             cceecCcccceeeeccC
Confidence            9999987 445676654

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.80  E-value=7.2e-16  Score=140.66  Aligned_cols=281  Identities=30%  Similarity=0.488  Sum_probs=205.7

Q ss_pred             CCCcCCceeeccCCC-CCEEEEEec-CCeEEEEcCC-CeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEe
Q 036314           20 PSLHDDWVSAVDGSN-PGFILTGCY-DNLGRVWKAG-GVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWK   96 (347)
Q Consensus        20 ~~~h~~~v~~~~~~~-~~~l~sg~~-d~~i~iw~~~-~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd   96 (347)
                      ...|...|..+++++ +.++++++. |+.+++|+.. +..+..+.+|...|.+++|+|.+.   ..+++++.|+.|++||
T Consensus       151 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~~~~~~d~~i~~wd  227 (466)
T COG2319         151 LEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGG---LLIASGSSDGTIRLWD  227 (466)
T ss_pred             EecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcc---eEEEEecCCCcEEEEE
Confidence            558999999999885 448888885 9999999976 577788889999999999996443   2456669999999998


Q ss_pred             ccccccccCccccceee-eeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCcccccccc
Q 036314           97 FDAEELVNHPKKIRSFK-ILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLE  175 (347)
Q Consensus        97 ~~~~~~~~~~~~~~~~~-~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (347)
                      ...+.         ... .+.+|...+ ...|++++..+++++.|+.+++|++.....                      
T Consensus       228 ~~~~~---------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~----------------------  275 (466)
T COG2319         228 LSTGK---------LLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS----------------------  275 (466)
T ss_pred             CCCCc---------EEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCc----------------------
Confidence            76332         223 467788775 448999998999999999999999875321                      


Q ss_pred             ccccccccCCccceEEEEeC-CCCeEEEEecCCcEEEEECCCCceeeeee--eCe-eeEEEEeeCCCCcEEEEe-cCCCc
Q 036314          176 GEAISTLVGHTQCVSSVVWP-QQETIYSASWDHSVRTWDVEMGKDLSDIF--CGK-ALNCIDIGGEGSALIAAG-GSDPI  250 (347)
Q Consensus       176 ~~~~~~~~~h~~~v~~~~~~-~~~~l~s~s~dg~v~vwd~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~la~~-~~d~~  250 (347)
                        ....+.+|...+.++.|. ++..+++++.|+.+++||.+.........  ... .+..+.+ .++...++.+ ..|+.
T Consensus       276 --~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~  352 (466)
T COG2319         276 --LLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSF-SPDGSLLVSGGSDDGT  352 (466)
T ss_pred             --EEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEE-CCCCCEEEEeecCCCc
Confidence              011225677888888884 57778889999899999998776555443  222 4677777 5442344444 67899


Q ss_pred             EEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEE-EeCCCcEEEEEcCCCccceeecCCCCeEEEEeecC-CCE
Q 036314          251 LRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLIS-ASYDGKVMLWDLRTAWPLSVIDSHKDKVLCADWWR-GDS  328 (347)
Q Consensus       251 i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s-~s~D~~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~  328 (347)
                      +.+|+.....   .......+. .+..+.+.+ . ....+ +..++.+.+|+............+...+....+.+ +..
T Consensus       353 ~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  426 (466)
T COG2319         353 IRLWDLRTGK---PLKTLEGHS-NVLSVSFSP-D-GRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKS  426 (466)
T ss_pred             EEeeecCCCc---eeEEecCCc-eEEEEEECC-C-CCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcE
Confidence            9999987532   222322222 278899988 6 44555 78999999999998766655554436777778864 667


Q ss_pred             EEEccCCceEEEeecc
Q 036314          329 VISGGVDSKLCVSSGV  344 (347)
Q Consensus       329 l~s~s~D~~v~vw~~~  344 (347)
                      +++++.++++++|...
T Consensus       427 ~~~~~~~~~~~~~~~~  442 (466)
T COG2319         427 LASGSSDNTIRLWDLK  442 (466)
T ss_pred             EEEecCCCcEEEEecc
Confidence            8888999999999754

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.79  E-value=4e-18  Score=139.35  Aligned_cols=254  Identities=19%  Similarity=0.265  Sum_probs=176.2

Q ss_pred             ceEEEEEeecCCCceEEEEEccC----CCcEEEEecc--ccccccCccccceeeeeeccccceEEEEEeCCCC-----EE
Q 036314           66 AVSSVNIIKSDGLKYVTVATASK----DQTLRLWKFD--AEELVNHPKKIRSFKILRGHKASVHSIAAETSGN-----MV  134 (347)
Q Consensus        66 ~V~~v~~~~~~~~~~~~l~s~s~----Dg~v~~wd~~--~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~-----~l  134 (347)
                      .+.++.|+.... ....||.||.    .+.|.+-.+.  +++++.       ... ..|.-+++.+-|.|+..     +|
T Consensus        46 ~lya~~Ws~~~~-~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~-------~a~-fd~~YP~tK~~wiPd~~g~~pdlL  116 (364)
T KOG0290|consen   46 PLYAMNWSVRPD-KKFRLAVGSFIEEYNNKVQIVQLDEDSGELVE-------DAN-FDHPYPVTKLMWIPDSKGVYPDLL  116 (364)
T ss_pred             ceeeeccccCCC-cceeEEEeeeccccCCeeEEEEEccCCCceec-------cCC-CCCCCCccceEecCCccccCcchh
Confidence            467888874322 2345777764    3456666654  222211       112 35888999999998863     45


Q ss_pred             EEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEeC--CCCeEEEEecCCcEEEE
Q 036314          135 CSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWP--QQETIYSASWDHSVRTW  212 (347)
Q Consensus       135 ~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~l~s~s~dg~v~vw  212 (347)
                      ||.  +-.+|+|.+...+..........                ...-..+..+++++-|.  +..+|.+.|-|-++.||
T Consensus       117 ATs--~D~LRlWri~~ee~~~~~~~~L~----------------~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiW  178 (364)
T KOG0290|consen  117 ATS--SDFLRLWRIGDEESRVELQSVLN----------------NNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIW  178 (364)
T ss_pred             hcc--cCeEEEEeccCcCCceehhhhhc----------------cCcccccCCcccccccccCCcceeEeecccCeEEEE
Confidence            443  34799999874321110000000                00012244577778885  55789999999999999


Q ss_pred             ECCCCce--ee--eeeeCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEE
Q 036314          213 DVEMGKD--LS--DIFCGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHL  288 (347)
Q Consensus       213 d~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l  288 (347)
                      |++++..  ++  -+-+.+++..++|...+..+||+.|.||.+|+||+|..+...-+..-.........++|++.+.+++
T Consensus       179 die~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnym  258 (364)
T KOG0290|consen  179 DIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYM  258 (364)
T ss_pred             EEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHH
Confidence            9998732  22  2345678999999887788999999999999999997654322222222245678899999998889


Q ss_pred             EEEeCCC-cEEEEEcCCC-ccceeecCCCCeEEEEeecCC--CEEEEccCCceEEEeecccC
Q 036314          289 ISASYDG-KVMLWDLRTA-WPLSVIDSHKDKVLCADWWRG--DSVISGGVDSKLCVSSGVSI  346 (347)
Q Consensus       289 ~s~s~D~-~i~lwd~~~~-~~~~~~~~h~~~v~~~~~~~~--~~l~s~s~D~~v~vw~~~~~  346 (347)
                      |+-..|+ .|.|.|+|.. .++..+++|++.|.+++|.|+  ..|+|+|.|.-+.+|+..|+
T Consensus       259 ATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~  320 (364)
T KOG0290|consen  259 ATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQM  320 (364)
T ss_pred             hhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccc
Confidence            9988764 7999999975 567899999999999999874  46999999999999998754

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.79  E-value=2e-16  Score=126.48  Aligned_cols=267  Identities=19%  Similarity=0.208  Sum_probs=177.0

Q ss_pred             cCC-CCCEEEEEecCCeEEEEcC----------CCe-EEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEecc
Q 036314           31 DGS-NPGFILTGCYDNLGRVWKA----------GGV-CTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFD   98 (347)
Q Consensus        31 ~~~-~~~~l~sg~~d~~i~iw~~----------~~~-~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~   98 (347)
                      +.+ ..++|+.|..+|+|-+..+          +|+ .+..+++|.++|..++|..      .+|++|+ ||.|+-|...
T Consensus        17 a~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d------~~Lls~g-dG~V~gw~W~   89 (325)
T KOG0649|consen   17 AISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD------DFLLSGG-DGLVYGWEWN   89 (325)
T ss_pred             hhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh------hheeecc-CceEEEeeeh
Confidence            344 3579999999999999854          122 3345689999999999974      2466655 5999999875


Q ss_pred             ccccccCcc----ccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccc
Q 036314           99 AEELVNHPK----KIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQL  174 (347)
Q Consensus        99 ~~~~~~~~~----~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (347)
                      ...-....+    ...+.++-.-.-..|+++...|..+-++.++-|+.+.-||++++                       
T Consensus        90 E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G-----------------------  146 (325)
T KOG0649|consen   90 EEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDG-----------------------  146 (325)
T ss_pred             hhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCC-----------------------
Confidence            332110000    00111110011245788888888777777779999999999874                       


Q ss_pred             cccccccccCCccceEEEEe-CCCCeEEEEecCCcEEEEECCCCceeeeeeeCe-----------eeEEEEeeCCCCcEE
Q 036314          175 EGEAISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFCGK-----------ALNCIDIGGEGSALI  242 (347)
Q Consensus       175 ~~~~~~~~~~h~~~v~~~~~-~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~l  242 (347)
                        +..++++||++.+.++.- .....++||+.||++|+||+++++.+..+...+           =+.+++.+   ...+
T Consensus       147 --~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~---edWl  221 (325)
T KOG0649|consen  147 --RIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVN---EDWL  221 (325)
T ss_pred             --EEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEecc---CceE
Confidence              446789999999999986 456789999999999999999999887765321           13344442   2344


Q ss_pred             EEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecCCCCeEEEEe
Q 036314          243 AAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKVLCAD  322 (347)
Q Consensus       243 a~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h~~~v~~~~  322 (347)
                      + ++...++.+|.++..+ +..++.+.   ..+..|.|-.+   .+++++....|.-|.+.. ..-.......-.+++..
T Consensus       222 v-CGgGp~lslwhLrsse-~t~vfpip---a~v~~v~F~~d---~vl~~G~g~~v~~~~l~G-vl~a~ip~~s~~c~s~s  292 (325)
T KOG0649|consen  222 V-CGGGPKLSLWHLRSSE-STCVFPIP---ARVHLVDFVDD---CVLIGGEGNHVQSYTLNG-VLQANIPVESTACYSAS  292 (325)
T ss_pred             E-ecCCCceeEEeccCCC-ceEEEecc---cceeEeeeecc---eEEEeccccceeeeeecc-EEEEeccCCccceeeec
Confidence            4 4557899999998643 22344443   35667778644   478888888999998863 32233333333567777


Q ss_pred             ec--CCCEEEEccCCceEEEe
Q 036314          323 WW--RGDSVISGGVDSKLCVS  341 (347)
Q Consensus       323 ~~--~~~~l~s~s~D~~v~vw  341 (347)
                      |+  |=+.|-.++....+.|.
T Consensus       293 ~~~~p~k~~s~ag~s~~~~i~  313 (325)
T KOG0649|consen  293 WQTSPIKFISIAGFSNKLHIL  313 (325)
T ss_pred             ccCCceEEEEecccceeeeee
Confidence            75  43345555666666553

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.78  E-value=6.9e-19  Score=161.71  Aligned_cols=234  Identities=21%  Similarity=0.318  Sum_probs=174.9

Q ss_pred             EeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEee
Q 036314           59 ILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGS  138 (347)
Q Consensus        59 ~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs  138 (347)
                      .|.||-..|.|+.|..    .+.++++|++|.-||||.++++.         ++...+||++.|+.++.+.++.+++++|
T Consensus       185 rLlgH~naVyca~fDr----tg~~Iitgsdd~lvKiwS~et~~---------~lAs~rGhs~ditdlavs~~n~~iaaaS  251 (1113)
T KOG0644|consen  185 RLLGHRNAVYCAIFDR----TGRYIITGSDDRLVKIWSMETAR---------CLASCRGHSGDITDLAVSSNNTMIAAAS  251 (1113)
T ss_pred             HHHhhhhheeeeeecc----ccceEeecCccceeeeeeccchh---------hhccCCCCccccchhccchhhhhhhhcc
Confidence            4668999999998876    44689999999999999988765         4456789999999999999999999999


Q ss_pred             CCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEeCCCCeEEEEecCCcEEEEECCCCc
Q 036314          139 WDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWPQQETIYSASWDHSVRTWDVEMGK  218 (347)
Q Consensus       139 ~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~dg~v~vwd~~~~~  218 (347)
                      .|..|++|.+.++                         ..+..+.+|+++|++++|++-.   +.+.||++++||.+-.-
T Consensus       252 ~D~vIrvWrl~~~-------------------------~pvsvLrghtgavtaiafsP~~---sss~dgt~~~wd~r~~~  303 (1113)
T KOG0644|consen  252 NDKVIRVWRLPDG-------------------------APVSVLRGHTGAVTAIAFSPRA---SSSDDGTCRIWDARLEP  303 (1113)
T ss_pred             cCceEEEEecCCC-------------------------chHHHHhccccceeeeccCccc---cCCCCCceEeccccccc
Confidence            9999999998764                         4567889999999999996533   88999999999987211


Q ss_pred             eee-----eeeeCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeC
Q 036314          219 DLS-----DIFCGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASY  293 (347)
Q Consensus       219 ~~~-----~~~~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~  293 (347)
                      .+.     .......+..+.+ ......+++++.|+.-..|.....         ..+...+.-+.++.+-....+++-.
T Consensus       304 ~~y~prp~~~~~~~~~~s~~~-~~~~~~f~Tgs~d~ea~n~e~~~l---------~~~~~~lif~t~ssd~~~~~~~ar~  373 (1113)
T KOG0644|consen  304 RIYVPRPLKFTEKDLVDSILF-ENNGDRFLTGSRDGEARNHEFEQL---------AWRSNLLIFVTRSSDLSSIVVTARN  373 (1113)
T ss_pred             cccCCCCCCcccccceeeeec-cccccccccccCCcccccchhhHh---------hhhccceEEEeccccccccceeeee
Confidence            110     0111112223333 334446788999998888865421         1222222222222232234677778


Q ss_pred             CCcEEEEEcCCCccceeecCCCCeEEEEeecC--CCEEEEccCCceEEEeec
Q 036314          294 DGKVMLWDLRTAWPLSVIDSHKDKVLCADWWR--GDSVISGGVDSKLCVSSG  343 (347)
Q Consensus       294 D~~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~--~~~l~s~s~D~~v~vw~~  343 (347)
                      +-.+.+|++.+|..++.+.+|.+.++.+.++|  .....+++.||...||+.
T Consensus       374 ~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi  425 (1113)
T KOG0644|consen  374 DHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDI  425 (1113)
T ss_pred             eeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeec
Confidence            88999999999999999999999999999986  335779999999999984

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.77  E-value=8.2e-17  Score=151.65  Aligned_cols=283  Identities=18%  Similarity=0.207  Sum_probs=179.0

Q ss_pred             eeccCCC-CCEEEEEecCCeEEEEcCC-CeEEEEeeccC---CceEEEEEeecCCCceEEEEEccCCCcEEEEecccccc
Q 036314           28 SAVDGSN-PGFILTGCYDNLGRVWKAG-GVCTHILEGHC---GAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEEL  102 (347)
Q Consensus        28 ~~~~~~~-~~~l~sg~~d~~i~iw~~~-~~~~~~l~~h~---~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~  102 (347)
                      ..+.|.+ ...++++.....|++||-+ +.+...|..+.   ..|+.+.+.-..  +..+|++|+.||.||||+--... 
T Consensus      1068 k~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~--D~aLlLtas~dGvIRIwk~y~~~- 1144 (1387)
T KOG1517|consen 1068 KTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQ--DDALLLTASSDGVIRIWKDYADK- 1144 (1387)
T ss_pred             ceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeeccc--chhheeeeccCceEEEecccccc-
Confidence            3444542 3467777666789999964 66655555443   468888877543  33578999999999999732110 


Q ss_pred             ccCccccceee---eeecc----ccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCcccccccc
Q 036314          103 VNHPKKIRSFK---ILRGH----KASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLE  175 (347)
Q Consensus       103 ~~~~~~~~~~~---~~~~h----~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (347)
                         .++.+.+.   .+.++    .+.=.-++|......|+++|.-..|+|||........                    
T Consensus      1145 ---~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~-------------------- 1201 (1387)
T KOG1517|consen 1145 ---WKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVA-------------------- 1201 (1387)
T ss_pred             ---cCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEe--------------------
Confidence               01111111   11222    1111224676666666666668899999987532110                    


Q ss_pred             ccccccccCCccceEEEEe--CCCCeEEEEecCCcEEEEECCCCce---eeeeee-C--eeeEEEEeeCCCCcEEEEecC
Q 036314          176 GEAISTLVGHTQCVSSVVW--PQQETIYSASWDHSVRTWDVEMGKD---LSDIFC-G--KALNCIDIGGEGSALIAAGGS  247 (347)
Q Consensus       176 ~~~~~~~~~h~~~v~~~~~--~~~~~l~s~s~dg~v~vwd~~~~~~---~~~~~~-~--~~~~~~~~~~~~~~~la~~~~  247 (347)
                          ....+....++++.-  ..++.++.|-.||.|++||.+....   +..... .  .++..+.+.+.+-..+++|+.
T Consensus      1202 ----diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~ 1277 (1387)
T KOG1517|consen 1202 ----DIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQ 1277 (1387)
T ss_pred             ----ecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeecc
Confidence                011112334555543  3568899999999999999986533   222221 2  236666665544446889999


Q ss_pred             CCcEEEEeCCCCCCCCCeEEecCCC---CCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecC-------CCCe
Q 036314          248 DPILRIWDPRKPGTSAPVFQFSSHN---SWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDS-------HKDK  317 (347)
Q Consensus       248 d~~i~iwd~~~~~~~~~~~~~~~h~---~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~-------h~~~  317 (347)
                      ||.|++||+|..... ...+...|-   +.++++..++..+ .+|+|+. +.|+||++.. +.+..+..       ..+.
T Consensus      1278 ~G~I~~~DlR~~~~e-~~~~iv~~~~yGs~lTal~VH~hap-iiAsGs~-q~ikIy~~~G-~~l~~~k~n~~F~~q~~gs 1353 (1387)
T KOG1517|consen 1278 DGDIQLLDLRMSSKE-TFLTIVAHWEYGSALTALTVHEHAP-IIASGSA-QLIKIYSLSG-EQLNIIKYNPGFMGQRIGS 1353 (1387)
T ss_pred             CCeEEEEecccCccc-ccceeeeccccCccceeeeeccCCC-eeeecCc-ceEEEEecCh-hhhcccccCcccccCcCCC
Confidence            999999999974222 222333333   2478888888875 5999998 9999999974 44443322       2356


Q ss_pred             EEEEeecCCC-EEEEccCCceEEEeecc
Q 036314          318 VLCADWWRGD-SVISGGVDSKLCVSSGV  344 (347)
Q Consensus       318 v~~~~~~~~~-~l~s~s~D~~v~vw~~~  344 (347)
                      +.|+.|+|-. .+|.|+.|.+|.||+-.
T Consensus      1354 ~scL~FHP~~~llAaG~~Ds~V~iYs~~ 1381 (1387)
T KOG1517|consen 1354 VSCLAFHPHRLLLAAGSADSTVSIYSCE 1381 (1387)
T ss_pred             cceeeecchhHhhhhccCCceEEEeecC
Confidence            7999999876 58899999999999753

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.77  E-value=2.8e-16  Score=144.94  Aligned_cols=277  Identities=14%  Similarity=0.133  Sum_probs=184.9

Q ss_pred             CeEEEEcCCCe--EEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeeeeccccce
Q 036314           45 NLGRVWKAGGV--CTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASV  122 (347)
Q Consensus        45 ~~i~iw~~~~~--~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V  122 (347)
                      +.+.+|+....  ....+. -...|.++.|+|...   ..|+.|..+|+|-+||+..+....   ....-.....|..+|
T Consensus       222 ~~~~vW~~~~p~~Pe~~~~-~~s~v~~~~f~p~~p---~ll~gG~y~GqV~lWD~~~~~~~~---~s~ls~~~~sh~~~v  294 (555)
T KOG1587|consen  222 GVLLVWSLKNPNTPELVLE-SPSEVTCLKFCPFDP---NLLAGGCYNGQVVLWDLRKGSDTP---PSGLSALEVSHSEPV  294 (555)
T ss_pred             ceEEEEecCCCCCceEEEe-cCCceeEEEeccCCc---ceEEeeccCceEEEEEccCCCCCC---CcccccccccCCcCe
Confidence            47899987532  223333 346699999998654   479999999999999998664311   011112334689999


Q ss_pred             EEEEEeCCC--CEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEeC--CCC
Q 036314          123 HSIAAETSG--NMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWP--QQE  198 (347)
Q Consensus       123 ~~v~~s~~~--~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~  198 (347)
                      ..+.|-.+-  .-++|+|.||.|..|+++..........          .....  ....... -.-.+.++.|+  +..
T Consensus       295 ~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~----------~~~~~--~~~~~~~-~~~~~t~~~F~~~~p~  361 (555)
T KOG1587|consen  295 TAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLL----------LESKK--HKGQQSS-KAVGATSLKFEPTDPN  361 (555)
T ss_pred             EEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcc----------ccccc--ccccccc-cccceeeEeeccCCCc
Confidence            999885543  5599999999999998764322110000          00000  0000000 11245667774  345


Q ss_pred             eEEEEecCCcEEEE---ECCCCc-e----e-eeeeeCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEec
Q 036314          199 TIYSASWDHSVRTW---DVEMGK-D----L-SDIFCGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFS  269 (347)
Q Consensus       199 ~l~s~s~dg~v~vw---d~~~~~-~----~-~~~~~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~  269 (347)
                      .++.|+.+|.|.--   +.+... .    . ....+..++.++.+.|-...+|++++ |.+++||.....  ..|+..+.
T Consensus       362 ~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~--~~Pl~~~~  438 (555)
T KOG1587|consen  362 HFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVI--ASPLLSLD  438 (555)
T ss_pred             eEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCC--CCcchhhh
Confidence            68889999988762   332222 0    1 11112356788888777777777777 999999986532  34577888


Q ss_pred             CCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCC--ccceeecCCCCeEEEEeecC-CCEEEEccCCceEEEeecc
Q 036314          270 SHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTA--WPLSVIDSHKDKVLCADWWR-GDSVISGGVDSKLCVSSGV  344 (347)
Q Consensus       270 ~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~--~~~~~~~~h~~~v~~~~~~~-~~~l~s~s~D~~v~vw~~~  344 (347)
                      .+.++|.+++|||-.+..++++..||.+.+||+...  .++.+...+......+.|++ |+.|+.|+..|++.++...
T Consensus       439 ~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~  516 (555)
T KOG1587|consen  439 SSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLS  516 (555)
T ss_pred             hccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence            899999999999999999999999999999999753  45555555544445666776 8889999999999999864

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.76  E-value=4.3e-17  Score=136.09  Aligned_cols=243  Identities=16%  Similarity=0.240  Sum_probs=165.4

Q ss_pred             CEEEEEecCCeEEEEcC-CCeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEecccccccc------Cc-c
Q 036314           36 GFILTGCYDNLGRVWKA-GGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVN------HP-K  107 (347)
Q Consensus        36 ~~l~sg~~d~~i~iw~~-~~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~------~~-~  107 (347)
                      ..+|++...|.||+||. ++..+..+.+|.+.++.++|+..+  ..+.+.+|+.||+||+||+......+      .+ .
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~d--s~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~  118 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCD--SPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGT  118 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCC--CCCeeEEeccCCeEEEEEeecchhhhheeccCCCCC
Confidence            56899999999999996 477888999999999999998754  23568999999999999986432111      00 0


Q ss_pred             ----------------------------------cccee-eeeeccccceEEEEEeCCC-CEEEEeeCCCcEEEEecCCC
Q 036314          108 ----------------------------------KIRSF-KILRGHKASVHSIAAETSG-NMVCSGSWDCTISLWRTNDS  151 (347)
Q Consensus       108 ----------------------------------~~~~~-~~~~~h~~~V~~v~~s~~~-~~l~sgs~Dg~I~iwd~~~~  151 (347)
                                                        ..+++ .-...|.+-|+++.|+|.. ++|+|||.||-|.|||+...
T Consensus       119 ~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d  198 (376)
T KOG1188|consen  119 PFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKD  198 (376)
T ss_pred             cceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCC
Confidence                                              00101 1245799999999999976 79999999999999998754


Q ss_pred             CCCCccceeeeccCCCccccccccccccccccCCccceEEEEeCCCC--eEEEEecCCcEEEEECCCCceeeeeeeC---
Q 036314          152 DAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWPQQE--TIYSASWDHSVRTWDVEMGKDLSDIFCG---  226 (347)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~l~s~s~dg~v~vwd~~~~~~~~~~~~~---  226 (347)
                      ...                      ..+-....|...|..+.|....  +|.+.+...++.+|+++.+.+...+.-.   
T Consensus       199 ~Ee----------------------DaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~  256 (376)
T KOG1188|consen  199 NEE----------------------DALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVS  256 (376)
T ss_pred             cch----------------------hhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccch
Confidence            221                      1122233456668888885444  7999999999999999988754332211   


Q ss_pred             -----e---eeEEEEee-CCCCcEEEEecC-CCcEEEEeCCC---CCCCCCeEEecC-CCCCeeEEEeCCCCCeEEEEEe
Q 036314          227 -----K---ALNCIDIG-GEGSALIAAGGS-DPILRIWDPRK---PGTSAPVFQFSS-HNSWISACKWHNKSWFHLISAS  292 (347)
Q Consensus       227 -----~---~~~~~~~~-~~~~~~la~~~~-d~~i~iwd~~~---~~~~~~~~~~~~-h~~~v~~v~~s~~~~~~l~s~s  292 (347)
                           +   .-+-+... +.+..+.+.++. -++..++-+..   .....+...+.+ |..-|+++.|.-.+ .+|.||+
T Consensus       257 ~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~-~~l~TGG  335 (376)
T KOG1188|consen  257 ADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKN-DVLYTGG  335 (376)
T ss_pred             hhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhccc-ceeeccC
Confidence                 0   00112222 334444444443 67777775542   112223455556 66667888887555 4799999


Q ss_pred             CCCcEEEEEcC
Q 036314          293 YDGKVMLWDLR  303 (347)
Q Consensus       293 ~D~~i~lwd~~  303 (347)
                      +||.+.+|...
T Consensus       336 EDG~l~~Wk~~  346 (376)
T KOG1188|consen  336 EDGLLQAWKVE  346 (376)
T ss_pred             CCceEEEEecC
Confidence            99999999853

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.75  E-value=3e-16  Score=147.94  Aligned_cols=253  Identities=21%  Similarity=0.276  Sum_probs=167.9

Q ss_pred             eEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeeeeccccceEEEEE--eCCCCEEEEeeCCCcEE
Q 036314           67 VSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAA--ETSGNMVCSGSWDCTIS  144 (347)
Q Consensus        67 V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~--s~~~~~l~sgs~Dg~I~  144 (347)
                      -..+.|+|-..    .++++.+--.|++||.+.++++..+...      ......|+.+.+  ..|..++++|+.||.||
T Consensus      1067 pk~~~~hpf~p----~i~~ad~r~~i~vwd~e~~~~l~~F~n~------~~~~t~Vs~l~liNe~D~aLlLtas~dGvIR 1136 (1387)
T KOG1517|consen 1067 PKTLKFHPFEP----QIAAADDRERIRVWDWEKGRLLNGFDNG------AFPDTRVSDLELINEQDDALLLTASSDGVIR 1136 (1387)
T ss_pred             CceeeecCCCc----eeEEcCCcceEEEEecccCceeccccCC------CCCCCccceeeeecccchhheeeeccCceEE
Confidence            34566666332    5777777779999999877654322111      112455777765  34567899999999999


Q ss_pred             EEecCCCC-CCCccceeeeccCCCccccccccccccccccCCccceEEEEeC-CCCeEEEEecCCcEEEEECCCCceeee
Q 036314          145 LWRTNDSD-AAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWP-QQETIYSASWDHSVRTWDVEMGKDLSD  222 (347)
Q Consensus       145 iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~l~s~s~dg~v~vwd~~~~~~~~~  222 (347)
                      ||+--... ...+.+.....          +.    ..+.+..+.-.-+.|. ..+.|++++.-+.|+|||+........
T Consensus      1137 Iwk~y~~~~~~~eLVTaw~~----------Ls----~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~d 1202 (1387)
T KOG1517|consen 1137 IWKDYADKWKKPELVTAWSS----------LS----DQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVAD 1202 (1387)
T ss_pred             EecccccccCCceeEEeecc----------cc----ccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEee
Confidence            99633211 11111110000          00    0011111111223564 445677777788999999988777777


Q ss_pred             eeeCe--eeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCC--eeEEEeCCCCCeEEEEEeCCCcEE
Q 036314          223 IFCGK--ALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSW--ISACKWHNKSWFHLISASYDGKVM  298 (347)
Q Consensus       223 ~~~~~--~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~--v~~v~~s~~~~~~l~s~s~D~~i~  298 (347)
                      +..+.  .++.+.-....++++++|..||.|++||.|.+.....+..+..|.++  |.-+.+.+.|-..|++||.||.|+
T Consensus      1203 iP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~ 1282 (1387)
T KOG1517|consen 1203 IPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQ 1282 (1387)
T ss_pred             cccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEE
Confidence            76443  35555555556789999999999999999976655567788899998  999999988766799999999999


Q ss_pred             EEEcCCCccc--eeecCCC--C-eEEEEeecC-CCEEEEccCCceEEEeecc
Q 036314          299 LWDLRTAWPL--SVIDSHK--D-KVLCADWWR-GDSVISGGVDSKLCVSSGV  344 (347)
Q Consensus       299 lwd~~~~~~~--~~~~~h~--~-~v~~~~~~~-~~~l~s~s~D~~v~vw~~~  344 (347)
                      +||+|.....  .++..|-  + .++++.-+. -..+|+|+. +.|.||+.-
T Consensus      1283 ~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~ 1333 (1387)
T KOG1517|consen 1283 LLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLS 1333 (1387)
T ss_pred             EEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecC
Confidence            9999974222  2233343  3 478888775 457899888 999999864

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.75  E-value=7.7e-17  Score=136.90  Aligned_cols=254  Identities=15%  Similarity=0.216  Sum_probs=177.6

Q ss_pred             CeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeee-eccccceEEEEEeCCCC
Q 036314           54 GVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKIL-RGHKASVHSIAAETSGN  132 (347)
Q Consensus        54 ~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~-~~h~~~V~~v~~s~~~~  132 (347)
                      ..|.+-+.+|.+.|+++.|+..    +++|++|+.|-.+++|.++..-....+   +++... ..|...|.|++|...+.
T Consensus        46 ~~~qKD~~~H~GCiNAlqFS~N----~~~L~SGGDD~~~~~W~~de~~~~k~~---KPI~~~~~~H~SNIF~L~F~~~N~  118 (609)
T KOG4227|consen   46 PFCQKDVREHTGCINALQFSHN----DRFLASGGDDMHGRVWNVDELMVRKTP---KPIGVMEHPHRSNIFSLEFDLENR  118 (609)
T ss_pred             chhhhhhhhhccccceeeeccC----CeEEeecCCcceeeeechHHHHhhcCC---CCceeccCccccceEEEEEccCCe
Confidence            4466678899999999999874    358999999999999998643222222   333332 23668899999999999


Q ss_pred             EEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccc--cCCccceEEEEe-CCCCeEEEEecCCcE
Q 036314          133 MVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTL--VGHTQCVSSVVW-PQQETIYSASWDHSV  209 (347)
Q Consensus       133 ~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~~~~-~~~~~l~s~s~dg~v  209 (347)
                      .+++|..+++|.+-|+++.+.                         +..+  ....+.|+.+.. |.++.+++.+.++.|
T Consensus       119 ~~~SG~~~~~VI~HDiEt~qs-------------------------i~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V  173 (609)
T KOG4227|consen  119 FLYSGERWGTVIKHDIETKQS-------------------------IYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLV  173 (609)
T ss_pred             eEecCCCcceeEeeeccccee-------------------------eeeecccCcccceeecccCCCCceEEEEecCceE
Confidence            999999999999999986432                         1111  112236666653 567889999999999


Q ss_pred             EEEECCCCceeeee----eeCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCC-------CCCeeEE
Q 036314          210 RTWDVEMGKDLSDI----FCGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSH-------NSWISAC  278 (347)
Q Consensus       210 ~vwd~~~~~~~~~~----~~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h-------~~~v~~v  278 (347)
                      .+||.+.......+    ..++....+.|+|....+|++....+-+.+||++++..+  +.+..+.       +.| ..+
T Consensus       174 ~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~--~~~~~~~~~L~~~~~~~-M~~  250 (609)
T KOG4227|consen  174 SFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARP--VYQRSMFKGLPQENTEW-MGS  250 (609)
T ss_pred             EEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccch--HHhhhccccCcccchhh-hhe
Confidence            99999865422222    234456778888988899999999999999999875433  3332222       222 457


Q ss_pred             EeCCCCCeEEEEEeCCCcEEEEEcCC-CccceeecCCC-------CeEEEEeecCCCEEEEccCCceEEEeecc
Q 036314          279 KWHNKSWFHLISASYDGKVMLWDLRT-AWPLSVIDSHK-------DKVLCADWWRGDSVISGGVDSKLCVSSGV  344 (347)
Q Consensus       279 ~~s~~~~~~l~s~s~D~~i~lwd~~~-~~~~~~~~~h~-------~~v~~~~~~~~~~l~s~s~D~~v~vw~~~  344 (347)
                      .|+|.|.. |++--...-=.+||+-. ..++..+. |.       ..+.++.|..+..++|||.|=.|.+|..|
T Consensus       251 ~~~~~G~Q-~msiRR~~~P~~~D~~S~R~~V~k~D-~N~~GY~N~~T~KS~~F~~D~~v~tGSD~~~i~~WklP  322 (609)
T KOG4227|consen  251 LWSPSGNQ-FMSIRRGKCPLYFDFISQRCFVLKSD-HNPNGYCNIKTIKSMTFIDDYTVATGSDHWGIHIWKLP  322 (609)
T ss_pred             eeCCCCCe-ehhhhccCCCEEeeeecccceeEecc-CCCCcceeeeeeeeeeeecceeeeccCcccceEEEecC
Confidence            89999865 55544444445677754 22233322 21       23557778777779999999999999876

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.75  E-value=2.7e-16  Score=136.08  Aligned_cols=243  Identities=12%  Similarity=0.158  Sum_probs=176.3

Q ss_pred             CCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCC-EEEEeeCCCc
Q 036314           64 CGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGN-MVCSGSWDCT  142 (347)
Q Consensus        64 ~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~-~l~sgs~Dg~  142 (347)
                      .+.|++|.|+|..    ..|++|+.|+++++|.++...       ...++.+.--.-||.+..|.|+|. .+++++.-.-
T Consensus       213 ~~~I~sv~FHp~~----plllvaG~d~~lrifqvDGk~-------N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky  281 (514)
T KOG2055|consen  213 HGGITSVQFHPTA----PLLLVAGLDGTLRIFQVDGKV-------NPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKY  281 (514)
T ss_pred             cCCceEEEecCCC----ceEEEecCCCcEEEEEecCcc-------ChhheeeeeccCccceeeecCCCceEEEecccceE
Confidence            3679999999944    478999999999999987542       112333334477899999999998 9999999999


Q ss_pred             EEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCc-cceEEEEe-CCCCeEEEEecCCcEEEEECCCCcee
Q 036314          143 ISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHT-QCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDL  220 (347)
Q Consensus       143 I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~-~~~~~l~s~s~dg~v~vwd~~~~~~~  220 (347)
                      ...||+.+....                       .+..+.++. ..+..+.. +++++|+..+..|.|.|.-..+++.+
T Consensus       282 ~ysyDle~ak~~-----------------------k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli  338 (514)
T KOG2055|consen  282 LYSYDLETAKVT-----------------------KLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELI  338 (514)
T ss_pred             EEEeeccccccc-----------------------cccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhh
Confidence            999999754221                       111222222 12222322 67889999999999999999999888


Q ss_pred             eeeeeCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCC-CeeEEEeCCCCCeEEEEEeCCCcEEE
Q 036314          221 SDIFCGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNS-WISACKWHNKSWFHLISASYDGKVML  299 (347)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~-~v~~v~~s~~~~~~l~s~s~D~~i~l  299 (347)
                      ..+.-...+..+.|++++. .|.+.+.+|.|.+||++..   ..+..+....+ .-.+++.++++. +||+||..|.|.|
T Consensus       339 ~s~KieG~v~~~~fsSdsk-~l~~~~~~GeV~v~nl~~~---~~~~rf~D~G~v~gts~~~S~ng~-ylA~GS~~GiVNI  413 (514)
T KOG2055|consen  339 TSFKIEGVVSDFTFSSDSK-ELLASGGTGEVYVWNLRQN---SCLHRFVDDGSVHGTSLCISLNGS-YLATGSDSGIVNI  413 (514)
T ss_pred             heeeeccEEeeEEEecCCc-EEEEEcCCceEEEEecCCc---ceEEEEeecCccceeeeeecCCCc-eEEeccCcceEEE
Confidence            8877777788899987765 4555566889999999864   33455543222 235677778876 5999999999999


Q ss_pred             EEcCC------CccceeecCCCCeEEEEeecC-CCEEE--EccCCceEEEeeccc
Q 036314          300 WDLRT------AWPLSVIDSHKDKVLCADWWR-GDSVI--SGGVDSKLCVSSGVS  345 (347)
Q Consensus       300 wd~~~------~~~~~~~~~h~~~v~~~~~~~-~~~l~--s~s~D~~v~vw~~~~  345 (347)
                      ||.++      ++|++++..-.-.|.++.|++ .+.||  |...+..+++--.||
T Consensus       414 Yd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS  468 (514)
T KOG2055|consen  414 YDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPS  468 (514)
T ss_pred             eccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccc
Confidence            99653      467777776677899999975 55555  444688888765554

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.75  E-value=3.5e-16  Score=132.97  Aligned_cols=283  Identities=15%  Similarity=0.168  Sum_probs=189.7

Q ss_pred             CCCCcCCceeeccCC-CCCEEEEEecCCeEEEEcCCC-------eEEEEee-ccCCceEEEEEeecCCCceEEEEEccCC
Q 036314           19 EPSLHDDWVSAVDGS-NPGFILTGCYDNLGRVWKAGG-------VCTHILE-GHCGAVSSVNIIKSDGLKYVTVATASKD   89 (347)
Q Consensus        19 ~~~~h~~~v~~~~~~-~~~~l~sg~~d~~i~iw~~~~-------~~~~~l~-~h~~~V~~v~~~~~~~~~~~~l~s~s~D   89 (347)
                      ...+|.+.|.++.|+ ++++||+||.|..+++|+...       +.+.... .|...|.+++|...    ...|.+|..+
T Consensus        51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~----N~~~~SG~~~  126 (609)
T KOG4227|consen   51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLE----NRFLYSGERW  126 (609)
T ss_pred             hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccC----CeeEecCCCc
Confidence            356899999999999 678999999999999998631       2222222 35578999999652    2579999999


Q ss_pred             CcEEEEeccccccccCccccceeeeeecccc---ceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCC
Q 036314           90 QTLRLWKFDAEELVNHPKKIRSFKILRGHKA---SVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGN  166 (347)
Q Consensus        90 g~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~---~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~  166 (347)
                      ++|.+.|+++.+         .+..+ .|..   .|..+..+|..+.|++.+.|+.|.+||+.+....+..+.       
T Consensus       127 ~~VI~HDiEt~q---------si~V~-~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~-------  189 (609)
T KOG4227|consen  127 GTVIKHDIETKQ---------SIYVA-NENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVL-------  189 (609)
T ss_pred             ceeEeeecccce---------eeeee-cccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceee-------
Confidence            999999998754         22322 4544   899999999999999999999999999987543322211       


Q ss_pred             CccccccccccccccccCCccceEEEEe-CC-CCeEEEEecCCcEEEEECCCCceee-e------eee-CeeeEEEEeeC
Q 036314          167 NQVEEPQLEGEAISTLVGHTQCVSSVVW-PQ-QETIYSASWDHSVRTWDVEMGKDLS-D------IFC-GKALNCIDIGG  236 (347)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~-~~~l~s~s~dg~v~vwd~~~~~~~~-~------~~~-~~~~~~~~~~~  236 (347)
                                     +....+....+.| |. ...|++.+..+.+-+||.+...... .      ++. ....+.+-|.+
T Consensus       190 ---------------~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~  254 (609)
T KOG4227|consen  190 ---------------PANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSP  254 (609)
T ss_pred             ---------------ecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCC
Confidence                           1111222334444 32 3467888888999999998654211 1      111 11224556666


Q ss_pred             CCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCC-------CCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCC-----
Q 036314          237 EGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHN-------SWISACKWHNKSWFHLISASYDGKVMLWDLRT-----  304 (347)
Q Consensus       237 ~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~-------~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~-----  304 (347)
                      .+.++++. -....=-+||+-...  .+++.+. |.       ..+.++.|..+  +.++|||.+=.|.+|.+-.     
T Consensus       255 ~G~Q~msi-RR~~~P~~~D~~S~R--~~V~k~D-~N~~GY~N~~T~KS~~F~~D--~~v~tGSD~~~i~~WklP~~~ds~  328 (609)
T KOG4227|consen  255 SGNQFMSI-RRGKCPLYFDFISQR--CFVLKSD-HNPNGYCNIKTIKSMTFIDD--YTVATGSDHWGIHIWKLPRANDSY  328 (609)
T ss_pred             CCCeehhh-hccCCCEEeeeeccc--ceeEecc-CCCCcceeeeeeeeeeeecc--eeeeccCcccceEEEecCCCcccc
Confidence            65554432 222333456664321  2233332 22       23667778655  4599999999999997632     


Q ss_pred             C------------------ccceeecCCCCeEEEEeecCCC-EEEEccCCceEEEeec
Q 036314          305 A------------------WPLSVIDSHKDKVLCADWWRGD-SVISGGVDSKLCVSSG  343 (347)
Q Consensus       305 ~------------------~~~~~~~~h~~~v~~~~~~~~~-~l~s~s~D~~v~vw~~  343 (347)
                      |                  ..+.++.||..-+.-|.|++.+ .|++.+..+.++||+-
T Consensus       329 G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~  386 (609)
T KOG4227|consen  329 GFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSD  386 (609)
T ss_pred             CccccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheecccc
Confidence            1                  0133578999989999999755 5788889999999974

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.74  E-value=4.4e-16  Score=129.27  Aligned_cols=243  Identities=18%  Similarity=0.327  Sum_probs=168.6

Q ss_pred             eEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCc------cccceeeeeeccccceEEEEE-------eCCCCE
Q 036314           67 VSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHP------KKIRSFKILRGHKASVHSIAA-------ETSGNM  133 (347)
Q Consensus        67 V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~------~~~~~~~~~~~h~~~V~~v~~-------s~~~~~  133 (347)
                      .....|+|++    ..|++-++|..+++|++...-.....      +....++..  ....|..-.|       .|+-.+
T Consensus        52 ~kgckWSPDG----SciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~--eg~tvydy~wYs~M~s~qP~t~l  125 (406)
T KOG2919|consen   52 LKGCKWSPDG----SCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQ--EGETVYDYCWYSRMKSDQPSTNL  125 (406)
T ss_pred             hccceeCCCC----ceEEeecccCeeeEEecChhhcccCCCCccccccceeEEec--cCCEEEEEEeeeccccCCCccce
Confidence            3467899954    47899999999999998643221110      000111111  1233444433       467789


Q ss_pred             EEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCcc---ceEEEEe-CCCCeEEEEecCCcE
Q 036314          134 VCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQ---CVSSVVW-PQQETIYSASWDHSV  209 (347)
Q Consensus       134 l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~~~~-~~~~~l~s~s~dg~v  209 (347)
                      +++.++|.-|++||.-+++...+.                       ..-.|.+   +..++.| |+|.+|++ +..+.|
T Consensus       126 ~a~ssr~~PIh~wdaftG~lraSy-----------------------~~ydh~de~taAhsL~Fs~DGeqlfa-Gykrci  181 (406)
T KOG2919|consen  126 FAVSSRDQPIHLWDAFTGKLRASY-----------------------RAYDHQDEYTAAHSLQFSPDGEQLFA-GYKRCI  181 (406)
T ss_pred             eeeccccCceeeeeccccccccch-----------------------hhhhhHHhhhhheeEEecCCCCeEee-cccceE
Confidence            999999999999998776432111                       1111222   2356777 57777765 578899


Q ss_pred             EEEEC-CCCceee---eeee-----CeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEe
Q 036314          210 RTWDV-EMGKDLS---DIFC-----GKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKW  280 (347)
Q Consensus       210 ~vwd~-~~~~~~~---~~~~-----~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~  280 (347)
                      +++|+ +.|..-.   ++..     ...+.|++++|.+...+|.|++...+-||.-..   ..+++.+.+|.+.|+-+.|
T Consensus       182 rvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~---~~pl~llggh~gGvThL~~  258 (406)
T KOG2919|consen  182 RVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDG---RRPLQLLGGHGGGVTHLQW  258 (406)
T ss_pred             EEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCC---CCceeeecccCCCeeeEEe
Confidence            99999 5554221   1222     235789999998888999999999998886443   3467888899999999999


Q ss_pred             CCCCCeEEEEEe-CCCcEEEEEcCC-CccceeecCCCC-eEEEEee---cCCCEEEEccCCceEEEeec
Q 036314          281 HNKSWFHLISAS-YDGKVMLWDLRT-AWPLSVIDSHKD-KVLCADW---WRGDSVISGGVDSKLCVSSG  343 (347)
Q Consensus       281 s~~~~~~l~s~s-~D~~i~lwd~~~-~~~~~~~~~h~~-~v~~~~~---~~~~~l~s~s~D~~v~vw~~  343 (347)
                      .++|.. |.+|+ .|..|..||+|. ..++..+..|.+ .=..+-|   +.|+.||+|+.||.|++|+.
T Consensus       259 ~edGn~-lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdl  326 (406)
T KOG2919|consen  259 CEDGNK-LFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDL  326 (406)
T ss_pred             ccCcCe-ecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEec
Confidence            999975 66666 688999999997 466777888876 3335556   35889999999999999985

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.74  E-value=3.6e-16  Score=129.38  Aligned_cols=193  Identities=13%  Similarity=0.149  Sum_probs=146.8

Q ss_pred             eEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEeC-CCCeE
Q 036314          122 VHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWP-QQETI  200 (347)
Q Consensus       122 V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~l  200 (347)
                      ..|+.|++.|.++|.|..||.|-|||+.+.                         ...+.+.+|..+|.+++|+ +|+.|
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~-------------------------~iar~lsaH~~pi~sl~WS~dgr~L   80 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTF-------------------------RIARMLSAHVRPITSLCWSRDGRKL   80 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEcccc-------------------------chhhhhhccccceeEEEecCCCCEe
Confidence            678999999999999999999999998753                         2345778899999999995 78899


Q ss_pred             EEEecCCcEEEEECCCCceeeeeeeCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEec----CCCCCe-
Q 036314          201 YSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFS----SHNSWI-  275 (347)
Q Consensus       201 ~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~----~h~~~v-  275 (347)
                      +++|.|..|++||+..|.+++.+....++....++|.+.+.+++.--+..-.+-+...+..    ..++    +..+.+ 
T Consensus        81 ltsS~D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h----~~Lp~d~d~dln~sa  156 (405)
T KOG1273|consen   81 LTSSRDWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKH----SVLPKDDDGDLNSSA  156 (405)
T ss_pred             eeecCCceeEEEeccCCCceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCce----eeccCCCcccccccc
Confidence            9999999999999999999999988889888888887666555443333333333322110    1111    111111 


Q ss_pred             eEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecCCC-CeEEEEeec-CCCEEEEccCCceEEEeecc
Q 036314          276 SACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHK-DKVLCADWW-RGDSVISGGVDSKLCVSSGV  344 (347)
Q Consensus       276 ~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h~-~~v~~~~~~-~~~~l~s~s~D~~v~vw~~~  344 (347)
                      .+..|.+.|. ++.+|..-|.+.++|..+-+.+..+.-.. -.|..+.++ .|..|+.-+.|+.||.+++-
T Consensus       157 s~~~fdr~g~-yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~  226 (405)
T KOG1273|consen  157 SHGVFDRRGK-YIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEIS  226 (405)
T ss_pred             ccccccCCCC-EEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehh
Confidence            2234777775 59999999999999999988888775444 577888887 68889999999999999864

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.73  E-value=1.2e-15  Score=140.75  Aligned_cols=274  Identities=16%  Similarity=0.229  Sum_probs=182.1

Q ss_pred             EEEEeccCCCCcCC-CCCcCCceeeccCC--CCCEEEEEecCCeEEEEcCCCeE-------EEEeeccCCceEEEEEeec
Q 036314            6 IEYIKAVAPQKEEE-PSLHDDWVSAVDGS--NPGFILTGCYDNLGRVWKAGGVC-------THILEGHCGAVSSVNIIKS   75 (347)
Q Consensus         6 ~~~~~~~~~~~~~~-~~~h~~~v~~~~~~--~~~~l~sg~~d~~i~iw~~~~~~-------~~~l~~h~~~V~~v~~~~~   75 (347)
                      +.|+-.+..+..-. .-.-...|++++|.  ++.+||.|+++|+|-+||..+..       ......|..++..+.|...
T Consensus       223 ~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~  302 (555)
T KOG1587|consen  223 VLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQN  302 (555)
T ss_pred             eEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEecc
Confidence            45565555441111 22345778899987  56799999999999999975321       1234578899999999764


Q ss_pred             CCCceEEEEEccCCCcEEEEeccccccccCccccceeeeee------ccccceEEEEEeCCC-CEEEEeeCCCcEEEEec
Q 036314           76 DGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILR------GHKASVHSIAAETSG-NMVCSGSWDCTISLWRT  148 (347)
Q Consensus        76 ~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~------~h~~~V~~v~~s~~~-~~l~sgs~Dg~I~iwd~  148 (347)
                      ...  .-++++|.||.|..|+++.-..   +....+.....      .-...+++++|.+.. ..++.|+.+|.|..=+-
T Consensus       303 ~~~--~~f~s~ssDG~i~~W~~~~l~~---P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r  377 (555)
T KOG1587|consen  303 EHN--TEFFSLSSDGSICSWDTDMLSL---PVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCR  377 (555)
T ss_pred             CCC--CceEEEecCCcEeeeecccccc---chhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEec
Confidence            432  4588999999999998753211   11011111000      113457888997755 57888999999876322


Q ss_pred             CCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEeC-CCCe-EEEEecCCcEEEEECC-CCceeeeeee
Q 036314          149 NDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWP-QQET-IYSASWDHSVRTWDVE-MGKDLSDIFC  225 (347)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~-l~s~s~dg~v~vwd~~-~~~~~~~~~~  225 (347)
                      ........                 ...+....+..|.++|..+.++ -... +++++ |-+++||... ...++..+..
T Consensus       378 ~g~~~~~~-----------------~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~  439 (555)
T KOG1587|consen  378 KGYTPAPE-----------------VSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDS  439 (555)
T ss_pred             cCCccccc-----------------ccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhh
Confidence            21111000                 0012233556788999999874 3444 44544 9999999876 3444433332


Q ss_pred             C-eeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCC
Q 036314          226 G-KALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRT  304 (347)
Q Consensus       226 ~-~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~  304 (347)
                      . ..+.+++|+|....+|+++..||++.+||+... ...|.....-+......+.|++.+. +|+.|...|++.+|++..
T Consensus       440 ~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~-~~~Pv~s~~~~~~~l~~~~~s~~g~-~lavGd~~G~~~~~~l~~  517 (555)
T KOG1587|consen  440 SPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQD-DEEPVLSQKVCSPALTRVRWSPNGK-LLAVGDANGTTHILKLSE  517 (555)
T ss_pred             ccceeeeeEEcCcCceEEEEEcCCCceehhhhhcc-ccCCcccccccccccceeecCCCCc-EEEEecCCCcEEEEEcCc
Confidence            2 348899999988889999999999999999753 3455666555666677788888774 699999999999999964

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.73  E-value=1.8e-14  Score=128.77  Aligned_cols=271  Identities=11%  Similarity=0.153  Sum_probs=161.0

Q ss_pred             EEEEecCCeEEEEcCC--Ce--EEEEeeccCCceEEEEEeecCCCceEEEE-EccCCCcEEEEeccc-cccccCccccce
Q 036314           38 ILTGCYDNLGRVWKAG--GV--CTHILEGHCGAVSSVNIIKSDGLKYVTVA-TASKDQTLRLWKFDA-EELVNHPKKIRS  111 (347)
Q Consensus        38 l~sg~~d~~i~iw~~~--~~--~~~~l~~h~~~V~~v~~~~~~~~~~~~l~-s~s~Dg~v~~wd~~~-~~~~~~~~~~~~  111 (347)
                      .++.+.|+.|++|+..  +.  .+..+. +.+....+.++|++.    +|+ ++..++.|.+|+++. +++       ..
T Consensus         5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~----~lyv~~~~~~~i~~~~~~~~g~l-------~~   72 (330)
T PRK11028          5 YIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKR----HLYVGVRPEFRVLSYRIADDGAL-------TF   72 (330)
T ss_pred             EEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCC----EEEEEECCCCcEEEEEECCCCce-------EE
Confidence            4555778999999974  33  334444 335567788888543    444 445688999999863 221       11


Q ss_pred             eeeeeccccceEEEEEeCCCCEEEEeeC-CCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceE
Q 036314          112 FKILRGHKASVHSIAAETSGNMVCSGSW-DCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVS  190 (347)
Q Consensus       112 ~~~~~~h~~~V~~v~~s~~~~~l~sgs~-Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~  190 (347)
                      ..... .......++|+|+++++++++. ++.|.+|++........                     .+..+.+.. ...
T Consensus        73 ~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~---------------------~~~~~~~~~-~~~  129 (330)
T PRK11028         73 AAESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVA---------------------PIQIIEGLE-GCH  129 (330)
T ss_pred             eeeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCC---------------------ceeeccCCC-ccc
Confidence            11111 2234567999999998887765 88999999863211100                     011111111 123


Q ss_pred             EEEe-CCCCeEE-EEecCCcEEEEECCCCceee-------eeeeCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCC-
Q 036314          191 SVVW-PQQETIY-SASWDHSVRTWDVEMGKDLS-------DIFCGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPG-  260 (347)
Q Consensus       191 ~~~~-~~~~~l~-s~s~dg~v~vwd~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~-  260 (347)
                      .+++ |++++++ +...++.|.+||+.+...+.       ....+.....+.+++++..++++...++.|.+||+.... 
T Consensus       130 ~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~  209 (330)
T PRK11028        130 SANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHG  209 (330)
T ss_pred             EeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCC
Confidence            3444 6777775 44556999999997633221       112234456788877665555555558999999986421 


Q ss_pred             CCCCeEEecC------CCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecCCC---CeEEEEeec-CCCEEE
Q 036314          261 TSAPVFQFSS------HNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHK---DKVLCADWW-RGDSVI  330 (347)
Q Consensus       261 ~~~~~~~~~~------h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h~---~~v~~~~~~-~~~~l~  330 (347)
                      .......+..      +..+...+.++|++.+++++...++.|.+|+++.......+.+|.   ...+.+.++ +|++|+
T Consensus       210 ~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~  289 (330)
T PRK11028        210 EIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLI  289 (330)
T ss_pred             CEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEE
Confidence            1112222221      122445688999997644444568899999996543222222221   134567886 477766


Q ss_pred             Ecc-CCceEEEeec
Q 036314          331 SGG-VDSKLCVSSG  343 (347)
Q Consensus       331 s~s-~D~~v~vw~~  343 (347)
                      +++ .+++|.||+-
T Consensus       290 va~~~~~~v~v~~~  303 (330)
T PRK11028        290 AAGQKSHHISVYEI  303 (330)
T ss_pred             EEEccCCcEEEEEE
Confidence            555 5999999964

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.72  E-value=2.1e-16  Score=139.48  Aligned_cols=261  Identities=16%  Similarity=0.147  Sum_probs=156.3

Q ss_pred             cCCCCCcCCceeeccCC-CCCEEEEEecCCeEEEEcCC-CeEEEE-eeccCCceEEEEEeecCCCceEEEEEccCCCcEE
Q 036314           17 EEEPSLHDDWVSAVDGS-NPGFILTGCYDNLGRVWKAG-GVCTHI-LEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLR   93 (347)
Q Consensus        17 ~~~~~~h~~~v~~~~~~-~~~~l~sg~~d~~i~iw~~~-~~~~~~-l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~   93 (347)
                      +.++.||++.|.+++.+ +|.+|+|||.|-.+.|||.- -+.++. -.||.+.|.++.|.|..+.  ..++||+.|..|+
T Consensus        43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnn--riv~sgAgDk~i~  120 (758)
T KOG1310|consen   43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNN--RIVLSGAGDKLIK  120 (758)
T ss_pred             hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCC--eEEEeccCcceEE
Confidence            34578999999999987 77899999999999999963 344444 4599999999999997653  5799999999999


Q ss_pred             EEeccccccccC-ccccceeeeeeccccceEEEEEeCCC-CEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCcccc
Q 036314           94 LWKFDAEELVNH-PKKIRSFKILRGHKASVHSIAAETSG-NMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEE  171 (347)
Q Consensus        94 ~wd~~~~~~~~~-~~~~~~~~~~~~h~~~V~~v~~s~~~-~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~  171 (347)
                      ++|++..+.-.. -....+...+..|...|..++-.|++ ..+.+++.||+|+-+|++.+..-...            ..
T Consensus       121 lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~------------~~  188 (758)
T KOG1310|consen  121 LFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPD------------ED  188 (758)
T ss_pred             EEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCcc------------cc
Confidence            999974321100 01112333456799999999999998 78999999999999999764210000            00


Q ss_pred             ccccccccccccCCccceEEEEe-C-CCCeEEEEecCCcEEEEECCCCceeeeeeeCeeeEEEEeeCCCCcEEEEecCCC
Q 036314          172 PQLEGEAISTLVGHTQCVSSVVW-P-QQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEGSALIAAGGSDP  249 (347)
Q Consensus       172 ~~~~~~~~~~~~~h~~~v~~~~~-~-~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~d~  249 (347)
                      .   ...+..+...--...++.. | +..+|+.|+.|-..++||.+.-  +..+.....   ....|+.        .++
T Consensus       189 ~---~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~--lks~~s~~~---~~~~pp~--------~~~  252 (758)
T KOG1310|consen  189 C---PSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRV--LKSFRSDGT---MNTCPPK--------DCR  252 (758)
T ss_pred             c---cHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhh--ccCCCCCcc---ccCCCCc--------ccc
Confidence            0   0000011111112234443 2 3456788888888888886432  111111000   0011110        122


Q ss_pred             cEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCcccee
Q 036314          250 ILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSV  310 (347)
Q Consensus       250 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~  310 (347)
                      .++.|-+.....+  ...+..-.-.++-+.|+|+|..+|++-+. ..|.++|+..++....
T Consensus       253 cv~yf~p~hlkn~--~gn~~~~~~~~t~vtfnpNGtElLvs~~g-EhVYlfdvn~~~~~~~  310 (758)
T KOG1310|consen  253 CVRYFSPGHLKNS--QGNLDRYITCCTYVTFNPNGTELLVSWGG-EHVYLFDVNEDKSPTP  310 (758)
T ss_pred             hhheecCccccCc--ccccccceeeeEEEEECCCCcEEEEeeCC-eEEEEEeecCCCCcee
Confidence            3333322110000  00000000013457899999887776554 3699999987765443

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.70  E-value=3e-15  Score=131.97  Aligned_cols=263  Identities=17%  Similarity=0.227  Sum_probs=173.7

Q ss_pred             CcCCceeeccCCCCCEEEEEecCCeEEEEc-CCCeEEEEeeccCCceEEEEE----eecCCCceEEEEEccCCCcEEEEe
Q 036314           22 LHDDWVSAVDGSNPGFILTGCYDNLGRVWK-AGGVCTHILEGHCGAVSSVNI----IKSDGLKYVTVATASKDQTLRLWK   96 (347)
Q Consensus        22 ~h~~~v~~~~~~~~~~l~sg~~d~~i~iw~-~~~~~~~~l~~h~~~V~~v~~----~~~~~~~~~~l~s~s~Dg~v~~wd   96 (347)
                      -|..-|.++..+...-+...+.|..+-+|. .....+..+.-..+.|....+    +..++.....++.++.||.+.+-+
T Consensus        12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il~   91 (737)
T KOG1524|consen   12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVILN   91 (737)
T ss_pred             ccceeEEeecccccceEEEeccCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEec
Confidence            455667788876555666777777777764 432222222222222222111    111222345678889999988876


Q ss_pred             ccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccc
Q 036314           97 FDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEG  176 (347)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (347)
                      ...          +.-....+|.+++.+-.|+|||.-|++++.||.|++|.-..                          
T Consensus        92 k~~----------rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsG--------------------------  135 (737)
T KOG1524|consen   92 KSA----------RVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSG--------------------------  135 (737)
T ss_pred             ccc----------hhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccc--------------------------
Confidence            432          22335678999999999999999999999999999996432                          


Q ss_pred             cccccccCCccceEEEEe-CCCCeEEEEecCCcEEEEECCCCceeeeeeeC-eeeEEEEeeCCCCcEEEEecCCCcEEEE
Q 036314          177 EAISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFCG-KALNCIDIGGEGSALIAAGGSDPILRIW  254 (347)
Q Consensus       177 ~~~~~~~~h~~~v~~~~~-~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~la~~~~d~~i~iw  254 (347)
                      ....++.....+|+|++| |+...++.+ ..+.+.|=-+.....+..+..+ ..+-++++++. ..++++|++|-+.++|
T Consensus       136 MLRStl~Q~~~~v~c~~W~p~S~~vl~c-~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~-s~lI~sgGED~kfKvW  213 (737)
T KOG1524|consen  136 MLRSTVVQNEESIRCARWAPNSNSIVFC-QGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQ-SNIIASGGEDFRFKIW  213 (737)
T ss_pred             hHHHHHhhcCceeEEEEECCCCCceEEe-cCCeEEEeecccccceeEEeccCcEEEEeecCcc-ccceeecCCceeEEee
Confidence            122234445668999999 555544333 2345666666655555555544 45788899654 5689999999999999


Q ss_pred             eCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecCCCCeEEEEeec-CCCEEEEcc
Q 036314          255 DPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKVLCADWW-RGDSVISGG  333 (347)
Q Consensus       255 d~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h~~~v~~~~~~-~~~~l~s~s  333 (347)
                      |..    ..+++.-+.|.-.|++++|+|+.  .++.+|.+ +.|   ++        ....+.|..++|| +|.+++.|.
T Consensus       214 D~~----G~~Lf~S~~~ey~ITSva~npd~--~~~v~S~n-t~R---~~--------~p~~GSifnlsWS~DGTQ~a~gt  275 (737)
T KOG1524|consen  214 DAQ----GANLFTSAAEEYAITSVAFNPEK--DYLLWSYN-TAR---FS--------SPRVGSIFNLSWSADGTQATCGT  275 (737)
T ss_pred             ccc----CcccccCChhccceeeeeecccc--ceeeeeee-eee---ec--------CCCccceEEEEEcCCCceeeccc
Confidence            965    23577778899999999999994  45555542 333   11        1235789999998 577888777


Q ss_pred             CCceEEE
Q 036314          334 VDSKLCV  340 (347)
Q Consensus       334 ~D~~v~v  340 (347)
                      ..|-|.+
T Consensus       276 ~~G~v~~  282 (737)
T KOG1524|consen  276 STGQLIV  282 (737)
T ss_pred             cCceEEE
Confidence            7777654

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.70  E-value=1.9e-15  Score=139.34  Aligned_cols=234  Identities=15%  Similarity=0.140  Sum_probs=150.4

Q ss_pred             CCeEEEEcCCCeEEEEeeccCCceEEEEEeecCCCceEEEEEccCC---CcEEEEeccccccccCccccceeeeeecccc
Q 036314           44 DNLGRVWKAGGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKD---QTLRLWKFDAEELVNHPKKIRSFKILRGHKA  120 (347)
Q Consensus        44 d~~i~iw~~~~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~D---g~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~  120 (347)
                      +.+|++||..|...+.+..|...+.+..|+|++.    .|+..+.+   .+|.+||+.+++.       +.+..+.+|. 
T Consensus       183 ~~~i~i~d~dg~~~~~lt~~~~~v~~p~wSPDG~----~la~~s~~~~~~~i~i~dl~tg~~-------~~l~~~~g~~-  250 (429)
T PRK01742        183 PYEVRVADYDGFNQFIVNRSSQPLMSPAWSPDGS----KLAYVSFENKKSQLVVHDLRSGAR-------KVVASFRGHN-  250 (429)
T ss_pred             eEEEEEECCCCCCceEeccCCCccccceEcCCCC----EEEEEEecCCCcEEEEEeCCCCce-------EEEecCCCcc-
Confidence            4689999988776777888888899999999553    46665543   4799999876532       1223334443 


Q ss_pred             ceEEEEEeCCCCEEEEe-eCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEe-CCCC
Q 036314          121 SVHSIAAETSGNMVCSG-SWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW-PQQE  198 (347)
Q Consensus       121 ~V~~v~~s~~~~~l~sg-s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~  198 (347)
                        ..++|+|||+.|+.+ +.||.+.||.++-..                        .....+..+...+....| |+++
T Consensus       251 --~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~------------------------~~~~~lt~~~~~~~~~~wSpDG~  304 (429)
T PRK01742        251 --GAPAFSPDGSRLAFASSKDGVLNIYVMGANG------------------------GTPSQLTSGAGNNTEPSWSPDGQ  304 (429)
T ss_pred             --CceeECCCCCEEEEEEecCCcEEEEEEECCC------------------------CCeEeeccCCCCcCCEEECCCCC
Confidence              357999999988765 578887777543110                        011223334444566677 5777


Q ss_pred             eEEEEe-cCCcEEEEECCCC-ceeeeeeeCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCee
Q 036314          199 TIYSAS-WDHSVRTWDVEMG-KDLSDIFCGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWIS  276 (347)
Q Consensus       199 ~l~s~s-~dg~v~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~  276 (347)
                      .|+.++ .++..+||++... .....+ .... ....++|++. .++..+.++ +.+||+.... .   ..+..+. ...
T Consensus       305 ~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~-~~~~~SpDG~-~ia~~~~~~-i~~~Dl~~g~-~---~~lt~~~-~~~  375 (429)
T PRK01742        305 SILFTSDRSGSPQVYRMSASGGGASLV-GGRG-YSAQISADGK-TLVMINGDN-VVKQDLTSGS-T---EVLSSTF-LDE  375 (429)
T ss_pred             EEEEEECCCCCceEEEEECCCCCeEEe-cCCC-CCccCCCCCC-EEEEEcCCC-EEEEECCCCC-e---EEecCCC-CCC
Confidence            766554 5688899987432 222222 1112 3456766554 555555554 6669986432 1   1222121 235


Q ss_pred             EEEeCCCCCeEEEEEeCCCcEEEEEcC--CCccceeecCCCCeEEEEeecC
Q 036314          277 ACKWHNKSWFHLISASYDGKVMLWDLR--TAWPLSVIDSHKDKVLCADWWR  325 (347)
Q Consensus       277 ~v~~s~~~~~~l~s~s~D~~i~lwd~~--~~~~~~~~~~h~~~v~~~~~~~  325 (347)
                      ++.|+|++. +|+.++.++.+.+|++.  ++...+.+.+|.+.+...+|+|
T Consensus       376 ~~~~sPdG~-~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp  425 (429)
T PRK01742        376 SPSISPNGI-MIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWSP  425 (429)
T ss_pred             CceECCCCC-EEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccCC
Confidence            678999986 58888889988888763  5777888888888899999986

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.69  E-value=3.2e-15  Score=134.95  Aligned_cols=268  Identities=12%  Similarity=0.195  Sum_probs=184.7

Q ss_pred             ceeeccCCC-CCEEEEEecCCeEEEEcC-CCeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccc
Q 036314           26 WVSAVDGSN-PGFILTGCYDNLGRVWKA-GGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELV  103 (347)
Q Consensus        26 ~v~~~~~~~-~~~l~sg~~d~~i~iw~~-~~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~  103 (347)
                      .|..++|-+ |..|+-+ .+..+.+||. .|..+.+|++|.+.|.+++++.++    ..+|||+.|..|.+|.-.-... 
T Consensus        14 ci~d~afkPDGsqL~lA-Ag~rlliyD~ndG~llqtLKgHKDtVycVAys~dG----krFASG~aDK~VI~W~~klEG~-   87 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILA-AGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDG----KRFASGSADKSVIIWTSKLEGI-   87 (1081)
T ss_pred             chheeEECCCCceEEEe-cCCEEEEEeCCCcccccccccccceEEEEEEccCC----ceeccCCCceeEEEecccccce-
Confidence            788888874 4433333 2458899997 488889999999999999999844    5799999999999998542211 


Q ss_pred             cCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCcccccccccccccccc
Q 036314          104 NHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLV  183 (347)
Q Consensus       104 ~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (347)
                              +  -..|.+.|.|+.|+|-...++|++-. ...+|..+...                          +...+
T Consensus        88 --------L--kYSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~--------------------------V~K~k  130 (1081)
T KOG1538|consen   88 --------L--KYSHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKS--------------------------VSKHK  130 (1081)
T ss_pred             --------e--eeccCCeeeEeecCchHHHhhhcchh-hccccChhhhh--------------------------HHhhh
Confidence                    1  13699999999999999999988754 45678654321                          00000


Q ss_pred             CCccceEEEEe-CCCCeEEEEecCCcEEEEECCCCceeeeee----eCeeeEEEEeeCCCC----cEEEEecCCCcEEEE
Q 036314          184 GHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIF----CGKALNCIDIGGEGS----ALIAAGGSDPILRIW  254 (347)
Q Consensus       184 ~h~~~v~~~~~-~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~----~~~~~~~~~~~~~~~----~~la~~~~d~~i~iw  254 (347)
                       -...+.+.+| .+|++++-|-.||+|.+-+-. +++-..+.    ...++..++++|..+    ..++......++.+|
T Consensus       131 -ss~R~~~CsWtnDGqylalG~~nGTIsiRNk~-gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy  208 (1081)
T KOG1538|consen  131 -SSSRIICCSWTNDGQYLALGMFNGTISIRNKN-GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFY  208 (1081)
T ss_pred             -hheeEEEeeecCCCcEEEEeccCceEEeecCC-CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEE
Confidence             1124566778 478899999999999998743 33322332    234678888876532    256777777888888


Q ss_pred             eCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecCCCCeEEEEeecC-CCEEEEcc
Q 036314          255 DPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKVLCADWWR-GDSVISGG  333 (347)
Q Consensus       255 d~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~l~s~s  333 (347)
                      .+... .......+.  -+ -.|+.+.|+|.+ ++.|+.|+.+++|- |.|..+.++-....-||+|.-.| +++++.|.
T Consensus       209 ~LsG~-~Igk~r~L~--Fd-P~CisYf~NGEy-~LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GC  282 (1081)
T KOG1538|consen  209 QLSGK-QIGKDRALN--FD-PCCISYFTNGEY-ILLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGC  282 (1081)
T ss_pred             Eecce-eecccccCC--CC-chhheeccCCcE-EEEccCCCceEEEe-ecCeEEeeccccceeEEEEEEccCCceEEEEE
Confidence            76531 111111111  11 246778889875 77788899999994 45666666655556789999865 77899999


Q ss_pred             CCceEEEeecc
Q 036314          334 VDSKLCVSSGV  344 (347)
Q Consensus       334 ~D~~v~vw~~~  344 (347)
                      .||||-.+..+
T Consensus       283 qDGTiACyNl~  293 (1081)
T KOG1538|consen  283 QDGTIACYNLI  293 (1081)
T ss_pred             ccCeeehhhhH
Confidence            99999766543

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.68  E-value=3.7e-14  Score=131.89  Aligned_cols=296  Identities=15%  Similarity=0.193  Sum_probs=193.7

Q ss_pred             CCCcCCceeeccCC-CCCEEEEEecCCeEEEEcCCC-----eEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEE
Q 036314           20 PSLHDDWVSAVDGS-NPGFILTGCYDNLGRVWKAGG-----VCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLR   93 (347)
Q Consensus        20 ~~~h~~~v~~~~~~-~~~~l~sg~~d~~i~iw~~~~-----~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~   93 (347)
                      ...|.-.+++++++ ++.++|+|-.||+|.+|..-+     ...+.|+=|.++|.+++|++++    ..|+||+..|.+-
T Consensus       201 ~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G----~~LlSGG~E~VLv  276 (792)
T KOG1963|consen  201 TVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDG----AYLLSGGREGVLV  276 (792)
T ss_pred             hhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCC----ceEeecccceEEE
Confidence            33688889999998 577999999999999996322     2345688899999999999954    4799999999999


Q ss_pred             EEeccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCcccccc
Q 036314           94 LWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQ  173 (347)
Q Consensus        94 ~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (347)
                      +|.+.+++.          +-|+.=.++|..+.++||+...+....|..|.+-...+........       ......+.
T Consensus       277 ~Wq~~T~~k----------qfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIs-------gi~~~~~~  339 (792)
T KOG1963|consen  277 LWQLETGKK----------QFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTIS-------GIKPPTPS  339 (792)
T ss_pred             EEeecCCCc----------ccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhcc-------CccCCCcc
Confidence            999987641          1123346789999999999999999999999999876643221100       00000000


Q ss_pred             ccccccccccCCccceEEEEe-CCCCeEEEEecCCcEEEEECCCCceeeeeee-------Ce-----eeEEEEeeCCCCc
Q 036314          174 LEGEAISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFC-------GK-----ALNCIDIGGEGSA  240 (347)
Q Consensus       174 ~~~~~~~~~~~h~~~v~~~~~-~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~-------~~-----~~~~~~~~~~~~~  240 (347)
                             ......+-...+.+ |.-+.++-.+..+.|++||+-+.+.+.++..       +.     .+..++.+.. ++
T Consensus       340 -------~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~-gs  411 (792)
T KOG1963|consen  340 -------TKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRF-GS  411 (792)
T ss_pred             -------ccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhcc-ce
Confidence                   00111222333444 3244566677889999999987776655531       11     2233333333 44


Q ss_pred             EEEEe--------cC--CCcEEEEeCCCCCCC--CCeEEecCCCCCeeEEEeCCC-CCeEEEEEeCCCcEEEEEcCC---
Q 036314          241 LIAAG--------GS--DPILRIWDPRKPGTS--APVFQFSSHNSWISACKWHNK-SWFHLISASYDGKVMLWDLRT---  304 (347)
Q Consensus       241 ~la~~--------~~--d~~i~iwd~~~~~~~--~~~~~~~~h~~~v~~v~~s~~-~~~~l~s~s~D~~i~lwd~~~---  304 (347)
                      .+++.        ..  ...+++|--....+.  .......+|...+....+.+. ...+.++++.||.+|||-+..   
T Consensus       412 ~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n  491 (792)
T KOG1963|consen  412 WMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSN  491 (792)
T ss_pred             EEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccc
Confidence            55442        22  245778864322111  112234578887666555444 333799999999999998832   


Q ss_pred             ---C----ccceeecCCCCeEEEEeecCCCEEEEccCCceEEEeecc
Q 036314          305 ---A----WPLSVIDSHKDKVLCADWWRGDSVISGGVDSKLCVSSGV  344 (347)
Q Consensus       305 ---~----~~~~~~~~h~~~v~~~~~~~~~~l~s~s~D~~v~vw~~~  344 (347)
                         .    .+...-..|.-++..++|+.+..++++|.|++|.+|+-.
T Consensus       492 ~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla~s~~~~Itiwd~~  538 (792)
T KOG1963|consen  492 IYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLAVSFDDTITIWDYD  538 (792)
T ss_pred             cCcCccceEEeeeeccccCcccchhhcCCCcEEEEecCCEEEEecCC
Confidence               1    112223358889999999865577888999999999854

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.68  E-value=2e-15  Score=135.59  Aligned_cols=236  Identities=18%  Similarity=0.272  Sum_probs=157.4

Q ss_pred             EecCCeEEEEcCC--CeEE-EEee--ccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeee
Q 036314           41 GCYDNLGRVWKAG--GVCT-HILE--GHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKIL  115 (347)
Q Consensus        41 g~~d~~i~iw~~~--~~~~-~~l~--~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~  115 (347)
                      .|..|.|-|+++.  |..- ..+.  -....|..+.|.|-+.   ..||.+++||.|++|.+..+.+..  ....+...+
T Consensus       599 ~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~---~rLAVa~ddg~i~lWr~~a~gl~e--~~~tPe~~l  673 (1012)
T KOG1445|consen  599 AGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDD---ERLAVATDDGQINLWRLTANGLPE--NEMTPEKIL  673 (1012)
T ss_pred             cCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCCh---HHeeecccCceEEEEEeccCCCCc--ccCCcceee
Confidence            4556899999863  3221 1111  1334688999987543   469999999999999998765432  223445678


Q ss_pred             eccccceEEEEEeCC-CCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEe
Q 036314          116 RGHKASVHSIAAETS-GNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW  194 (347)
Q Consensus       116 ~~h~~~V~~v~~s~~-~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  194 (347)
                      .+|...|.++.|+|= .+.|+++++|.+|++||+.+.                         +....+.+|++.|.+++|
T Consensus       674 t~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~-------------------------~~~~~l~gHtdqIf~~AW  728 (1012)
T KOG1445|consen  674 TIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANA-------------------------KLYSRLVGHTDQIFGIAW  728 (1012)
T ss_pred             ecccceEEEEEecchhhhHhhhhhccceeeeeehhhh-------------------------hhhheeccCcCceeEEEE
Confidence            899999999999995 478999999999999999764                         234467899999999999


Q ss_pred             -CCCCeEEEEecCCcEEEEECCCCceeeee-ee--CeeeEEEEeeCCCCcEEEEecC---CCcEEEEeCCCCCCCCCeEE
Q 036314          195 -PQQETIYSASWDHSVRTWDVEMGKDLSDI-FC--GKALNCIDIGGEGSALIAAGGS---DPILRIWDPRKPGTSAPVFQ  267 (347)
Q Consensus       195 -~~~~~l~s~s~dg~v~vwd~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~la~~~~---d~~i~iwd~~~~~~~~~~~~  267 (347)
                       ++|+.+++.+.||+|++|+.+.+...... ..  +..-..+.|.-++..++++|..   ...|.+||...-. ..++.+
T Consensus       729 SpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~-~~pl~t  807 (1012)
T KOG1445|consen  729 SPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLD-LRPLYT  807 (1012)
T ss_pred             CCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhcc-CCccee
Confidence             58889999999999999998876532211 11  1111223344455555555532   3567788765321 122222


Q ss_pred             ecCCCCC-eeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCcc
Q 036314          268 FSSHNSW-ISACKWHNKSWFHLISASYDGKVMLWDLRTAWP  307 (347)
Q Consensus       268 ~~~h~~~-v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~  307 (347)
                      ..-.... +.--.+.+|...++++|-.|..|.+|++-...+
T Consensus       808 ~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~esP  848 (1012)
T KOG1445|consen  808 QVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYESP  848 (1012)
T ss_pred             eeecccCccccccccCCCceEEEecCCCceEEEEEecCCCc
Confidence            2111110 000124456677899999999999999876543

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.65  E-value=1.5e-13  Score=110.25  Aligned_cols=201  Identities=14%  Similarity=0.223  Sum_probs=138.4

Q ss_pred             CCcCCceeeccCCCCCEEEEEecCCeEEEEcCCC-----eEE----EEeeccC-----CceEEEEEeecCCCceEEEEEc
Q 036314           21 SLHDDWVSAVDGSNPGFILTGCYDNLGRVWKAGG-----VCT----HILEGHC-----GAVSSVNIIKSDGLKYVTVATA   86 (347)
Q Consensus        21 ~~h~~~v~~~~~~~~~~l~sg~~d~~i~iw~~~~-----~~~----~~l~~h~-----~~V~~v~~~~~~~~~~~~l~s~   86 (347)
                      -+|+++|..++|. +.+|++|+ ||.|+=|.-..     .+.    ....-|.     ..|+++-..|+.+.    ++.+
T Consensus        59 qahdgpiy~~~f~-d~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enS----i~~A  132 (325)
T KOG0649|consen   59 QAHDGPIYYLAFH-DDFLLSGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENS----ILFA  132 (325)
T ss_pred             cccCCCeeeeeee-hhheeecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCc----EEEe
Confidence            4799999999987 45677775 59999885321     111    1122233     35788888776553    6677


Q ss_pred             cCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCC
Q 036314           87 SKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGN  166 (347)
Q Consensus        87 s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~  166 (347)
                      +.|+.+.-||+++++.         ..+++||++-|++++--.....++||+.||++|+||+.+..+....    .    
T Consensus       133 gGD~~~y~~dlE~G~i---------~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~i----e----  195 (325)
T KOG0649|consen  133 GGDGVIYQVDLEDGRI---------QREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMI----E----  195 (325)
T ss_pred             cCCeEEEEEEecCCEE---------EEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEe----c----
Confidence            7999999999998863         4578999999999987555568999999999999999876432110    0    


Q ss_pred             CccccccccccccccccCC-ccceEEEEeCCCCeEEEEecCCcEEEEECCCCceeeeeeeCeeeEEEEeeCCCCcEEEEe
Q 036314          167 NQVEEPQLEGEAISTLVGH-TQCVSSVVWPQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEGSALIAAG  245 (347)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~  245 (347)
                           ++-.   ...++.| ..+|-+++- +...+++| ....+.+|.++..++...+....++..++|..   ..++++
T Consensus       196 -----~yk~---~~~lRp~~g~wigala~-~edWlvCG-gGp~lslwhLrsse~t~vfpipa~v~~v~F~~---d~vl~~  262 (325)
T KOG0649|consen  196 -----PYKN---PNLLRPDWGKWIGALAV-NEDWLVCG-GGPKLSLWHLRSSESTCVFPIPARVHLVDFVD---DCVLIG  262 (325)
T ss_pred             -----cccC---hhhcCcccCceeEEEec-cCceEEec-CCCceeEEeccCCCceEEEecccceeEeeeec---ceEEEe
Confidence                 0000   0112223 245666653 34566655 45679999999988888777777777888843   256778


Q ss_pred             cCCCcEEEEeCC
Q 036314          246 GSDPILRIWDPR  257 (347)
Q Consensus       246 ~~d~~i~iwd~~  257 (347)
                      ++.+.|.-|.+.
T Consensus       263 G~g~~v~~~~l~  274 (325)
T KOG0649|consen  263 GEGNHVQSYTLN  274 (325)
T ss_pred             ccccceeeeeec
Confidence            888889988765

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.65  E-value=7.2e-14  Score=134.00  Aligned_cols=292  Identities=16%  Similarity=0.160  Sum_probs=176.2

Q ss_pred             CCcCCceeeccCCC-C-CEEEEEecCCeEEEEcCC---Ce-----EEEEeeccCCceEEEEEeecCCCceEEEEEccCCC
Q 036314           21 SLHDDWVSAVDGSN-P-GFILTGCYDNLGRVWKAG---GV-----CTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQ   90 (347)
Q Consensus        21 ~~h~~~v~~~~~~~-~-~~l~sg~~d~~i~iw~~~---~~-----~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg   90 (347)
                      ..|...|..++.++ . .+++|||.||+||+||..   +.     +.-++.--...+..+...+.+    ..+|.++.||
T Consensus      1045 ~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~----~~~Av~t~DG 1120 (1431)
T KOG1240|consen 1045 HEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNG----DQFAVSTKDG 1120 (1431)
T ss_pred             hhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCC----CeEEEEcCCC
Confidence            35788888777653 3 699999999999999963   11     122233344567777776633    3688899999


Q ss_pred             cEEEEeccccccccCccccceeeeeeccc-cceEEE-EEe-CCCC-EEEEeeCCCcEEEEecCCCCCCCccceeeeccCC
Q 036314           91 TLRLWKFDAEELVNHPKKIRSFKILRGHK-ASVHSI-AAE-TSGN-MVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGN  166 (347)
Q Consensus        91 ~v~~wd~~~~~~~~~~~~~~~~~~~~~h~-~~V~~v-~~s-~~~~-~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~  166 (347)
                      .|++.+++-.+....  ..........+. +.+.++ +|. .++. .++-+..-+.|..||+.......           
T Consensus      1121 ~v~~~~id~~~~~~~--~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w----------- 1187 (1431)
T KOG1240|consen 1121 SVRVLRIDHYNVSKR--VATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAW----------- 1187 (1431)
T ss_pred             eEEEEEccccccccc--eeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHH-----------
Confidence            999999875211000  011111222232 233333 332 2334 77778888999999986432100           


Q ss_pred             CccccccccccccccccCCccceEEEEe-CCCCeEEEEecCCcEEEEECCCCceeeeeeeCe--eeEEEEeeC--C-CCc
Q 036314          167 NQVEEPQLEGEAISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFCGK--ALNCIDIGG--E-GSA  240 (347)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~--~~~~~~~~~--~-~~~  240 (347)
                                  ........+.|++++. +.+..++.|...|.+.+||++=+.++..+..+.  +++.+.+++  + ...
T Consensus      1188 ------------~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~ 1255 (1431)
T KOG1240|consen 1188 ------------RLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESV 1255 (1431)
T ss_pred             ------------hhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCce
Confidence                        0011112356778776 456789999999999999999888777776443  344444443  2 223


Q ss_pred             EEEEec-CCCcEEEEeCCCCCCC--------CCeEEec--------CCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcC
Q 036314          241 LIAAGG-SDPILRIWDPRKPGTS--------APVFQFS--------SHNSWISACKWHNKSWFHLISASYDGKVMLWDLR  303 (347)
Q Consensus       241 ~la~~~-~d~~i~iwd~~~~~~~--------~~~~~~~--------~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~  303 (347)
                      .+++++ ..+.|.+|++..+...        .+.....        .+.-....+.+. ++..++.+|+.|..||.||..
T Consensus      1256 ~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~-~~~~~~ltggsd~kIR~wD~~ 1334 (1431)
T KOG1240|consen 1256 SVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVC-EKNGFLLTGGSDMKIRKWDPT 1334 (1431)
T ss_pred             EEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecc-cCCceeeecCCccceeeccCC
Confidence            444444 5789999998653211        0000000        111112223332 223469999999999999975


Q ss_pred             CCccc-----------------------------e-------------------e--------ecCCCCeEEEEeec--C
Q 036314          304 TAWPL-----------------------------S-------------------V--------IDSHKDKVLCADWW--R  325 (347)
Q Consensus       304 ~~~~~-----------------------------~-------------------~--------~~~h~~~v~~~~~~--~  325 (347)
                      ..+..                             .                   .        -.+|.+.|..+++-  +
T Consensus      1335 ~p~~ss~~~~~~s~~~~~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~ 1414 (1431)
T KOG1240|consen 1335 RPEISSYAVPGPSTSYSTNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSE 1414 (1431)
T ss_pred             CcccccccccCccccccccchhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccC
Confidence            43210                             0                   0        02477888888874  4


Q ss_pred             CCEEEEccCCceEEEee
Q 036314          326 GDSVISGGVDSKLCVSS  342 (347)
Q Consensus       326 ~~~l~s~s~D~~v~vw~  342 (347)
                      ...|++++.||.|+||.
T Consensus      1415 q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1415 QPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred             ccEEEEecCCCeeeecC
Confidence            34799999999999993

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.65  E-value=8.8e-14  Score=115.63  Aligned_cols=244  Identities=15%  Similarity=0.241  Sum_probs=176.3

Q ss_pred             EeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEee
Q 036314           59 ILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGS  138 (347)
Q Consensus        59 ~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs  138 (347)
                      .+.--..+|++.+|.++    ...+|.+-+..+|.||....++      .++...++..|...|+.|.|+|..+.|++++
T Consensus         5 ~~~~~~~pitchAwn~d----rt~iAv~~~~~evhiy~~~~~~------~w~~~htls~Hd~~vtgvdWap~snrIvtcs   74 (361)
T KOG1523|consen    5 VFHRLLEPITCHAWNSD----RTQIAVSPNNHEVHIYSMLGAD------LWEPAHTLSEHDKIVTGVDWAPKSNRIVTCS   74 (361)
T ss_pred             EeeeccCceeeeeecCC----CceEEeccCCceEEEEEecCCC------CceeceehhhhCcceeEEeecCCCCceeEcc
Confidence            34444577999999874    3578999999999999987654      2567788999999999999999999999999


Q ss_pred             CCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEe-CCCCeEEEEecCCcEEEEECCCC
Q 036314          139 WDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMG  217 (347)
Q Consensus       139 ~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~l~s~s~dg~v~vwd~~~~  217 (347)
                      .|..-.+|...++..                      -+..-.+..++.+..++.| |..+.++.||..+.|.||-.+..
T Consensus        75 ~drnayVw~~~~~~~----------------------WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~E  132 (361)
T KOG1523|consen   75 HDRNAYVWTQPSGGT----------------------WKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQE  132 (361)
T ss_pred             CCCCccccccCCCCe----------------------eccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecc
Confidence            999999997643211                      0112244557788899999 56778999999999999987654


Q ss_pred             cee--e-ee--eeCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCC-----CCCCCC----------CeEEecCCCCCeeE
Q 036314          218 KDL--S-DI--FCGKALNCIDIGGEGSALIAAGGSDPILRIWDPR-----KPGTSA----------PVFQFSSHNSWISA  277 (347)
Q Consensus       218 ~~~--~-~~--~~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~-----~~~~~~----------~~~~~~~h~~~v~~  277 (347)
                      ..-  . .+  .....+.++++++++ -++|+|+.|++.|+|..-     ....+.          .+..+..-.++|..
T Consensus       133 NdWWVsKhikkPirStv~sldWhpnn-VLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~  211 (361)
T KOG1523|consen  133 NDWWVSKHIKKPIRSTVTSLDWHPNN-VLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHG  211 (361)
T ss_pred             cceehhhhhCCccccceeeeeccCCc-ceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceee
Confidence            321  1 11  123457899998765 578999999999999631     110110          12234456779999


Q ss_pred             EEeCCCCCeEEEEEeCCCcEEEEEcCCCc-cceeecCCCCeEEEEeecCCCEEEEccCCc
Q 036314          278 CKWHNKSWFHLISASYDGKVMLWDLRTAW-PLSVIDSHKDKVLCADWWRGDSVISGGVDS  336 (347)
Q Consensus       278 v~~s~~~~~~l~s~s~D~~i~lwd~~~~~-~~~~~~~h~~~v~~~~~~~~~~l~s~s~D~  336 (347)
                      +.|+|.|. .|+=.+.|+++.+=|...+. .++....-.=+.+++.|-....++.++.|.
T Consensus       212 v~fs~sG~-~lawv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~ise~~vv~ag~~c  270 (361)
T KOG1523|consen  212 VLFSPSGN-RLAWVGHDSTVSFVDAAGPSERVQSVATAQLPLLSVSWISENSVVAAGYDC  270 (361)
T ss_pred             eEeCCCCC-EeeEecCCCceEEeecCCCchhccchhhccCCceeeEeecCCceeecCCCC
Confidence            99999996 49999999999999987764 233332222466788886666677777663

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.64  E-value=5.9e-15  Score=119.43  Aligned_cols=258  Identities=18%  Similarity=0.258  Sum_probs=171.9

Q ss_pred             CCCcCCceeeccCCCCCEEEEEecCCeEEEEcCCCe-EEEEee-ccCCceEEEEEeecCCCceEEEEEccCCCcEEEEec
Q 036314           20 PSLHDDWVSAVDGSNPGFILTGCYDNLGRVWKAGGV-CTHILE-GHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKF   97 (347)
Q Consensus        20 ~~~h~~~v~~~~~~~~~~l~sg~~d~~i~iw~~~~~-~~~~l~-~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~   97 (347)
                      +.+|...|+++-|-..++|.+|..-|.+.+|.+.+. ..-.+. .|...|+.+...|.+     .|.+=+.|+.+-+|++
T Consensus        10 LRp~~~~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d-----~l~tqgRd~~L~lw~i   84 (323)
T KOG0322|consen   10 LRPHSSSVTSVLFQANERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPND-----SLDTQGRDPLLILWTI   84 (323)
T ss_pred             eccccchheehhhccchhhhcccccceEEEEEeecCccchhhhhhccceeeceeecCCc-----chhhcCCCceEEEEEc
Confidence            448999999999986778999999999999997543 233455 466778888887743     4788899999999997


Q ss_pred             cccccc------------------cCcccc----------------------ceeee----eeccccceEEEEEe-CCCC
Q 036314           98 DAEELV------------------NHPKKI----------------------RSFKI----LRGHKASVHSIAAE-TSGN  132 (347)
Q Consensus        98 ~~~~~~------------------~~~~~~----------------------~~~~~----~~~h~~~V~~v~~s-~~~~  132 (347)
                      ..+..+                  ..++..                      .....    -.+-.+.+.+..+. ..+.
T Consensus        85 a~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s  164 (323)
T KOG0322|consen   85 AYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGS  164 (323)
T ss_pred             cCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccc
Confidence            653211                  000000                      00000    11234455555532 2233


Q ss_pred             --EEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEeC-CCCeEEEEecCCcE
Q 036314          133 --MVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWP-QQETIYSASWDHSV  209 (347)
Q Consensus       133 --~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~l~s~s~dg~v  209 (347)
                        +++.|=.+|.+-+||+..+...-      ..+        + ..+.......|..+|.++.|. .-..=++++.+..+
T Consensus       165 ~~lllaGyEsghvv~wd~S~~~~~~------~~~--------~-~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl  229 (323)
T KOG0322|consen  165 TFLLLAGYESGHVVIWDLSTGDKII------QLP--------Q-SSKVESPNASHKQPVLSLDYASSCDRGISGGADDKL  229 (323)
T ss_pred             eEEEEEeccCCeEEEEEccCCceee------ccc--------c-ccccccchhhccCcceeeeechhhcCCcCCCccccc
Confidence              45677889999999997642100      000        0 001223345688889888873 22233678888889


Q ss_pred             EEEECCCC--cee-e-eeee-CeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCC
Q 036314          210 RTWDVEMG--KDL-S-DIFC-GKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKS  284 (347)
Q Consensus       210 ~vwd~~~~--~~~-~-~~~~-~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~  284 (347)
                      ..|.+...  ... . .+.. +..+..+.+- +++.++|+++.|+.||+|..+.   ..++..+.-|.+.|++++|+|+.
T Consensus       230 ~~~Sl~~s~gslq~~~e~~lknpGv~gvrIR-pD~KIlATAGWD~RiRVyswrt---l~pLAVLkyHsagvn~vAfspd~  305 (323)
T KOG0322|consen  230 VMYSLNHSTGSLQIRKEITLKNPGVSGVRIR-PDGKILATAGWDHRIRVYSWRT---LNPLAVLKYHSAGVNAVAFSPDC  305 (323)
T ss_pred             eeeeeccccCcccccceEEecCCCccceEEc-cCCcEEeecccCCcEEEEEecc---CCchhhhhhhhcceeEEEeCCCC
Confidence            99988643  211 1 1111 2235556664 4567999999999999999885   34577788899999999999996


Q ss_pred             CeEEEEEeCCCcEEEEEc
Q 036314          285 WFHLISASYDGKVMLWDL  302 (347)
Q Consensus       285 ~~~l~s~s~D~~i~lwd~  302 (347)
                      + ++|++|.|++|-+|++
T Consensus       306 ~-lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  306 E-LMAAASKDARISLWKL  322 (323)
T ss_pred             c-hhhhccCCceEEeeec
Confidence            4 6999999999999986

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.64  E-value=1.2e-13  Score=132.60  Aligned_cols=268  Identities=16%  Similarity=0.227  Sum_probs=171.2

Q ss_pred             EcCCCeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeC
Q 036314           50 WKAGGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAET  129 (347)
Q Consensus        50 w~~~~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~  129 (347)
                      |++.|..++.|..|...|..++.++...   .+++|||.||+||+|+...-.  ......+...++......+.++.+-+
T Consensus      1034 W~p~G~lVAhL~Ehs~~v~k~a~s~~~~---s~FvsgS~DGtVKvW~~~k~~--~~~~s~rS~ltys~~~sr~~~vt~~~ 1108 (1431)
T KOG1240|consen 1034 WNPRGILVAHLHEHSSAVIKLAVSSEHT---SLFVSGSDDGTVKVWNLRKLE--GEGGSARSELTYSPEGSRVEKVTMCG 1108 (1431)
T ss_pred             CCccceEeehhhhccccccceeecCCCC---ceEEEecCCceEEEeeehhhh--cCcceeeeeEEEeccCCceEEEEecc
Confidence            8999999999999999999998877542   379999999999999975321  11122333344444577889999999


Q ss_pred             CCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCC-ccceEEE-EeC--CC-CeEEEEe
Q 036314          130 SGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGH-TQCVSSV-VWP--QQ-ETIYSAS  204 (347)
Q Consensus       130 ~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~-~~~--~~-~~l~s~s  204 (347)
                      .++.+|.++.||.|++.+++-.......                  ..+.+....+ .+++.++ +|.  .+ ..++.+.
T Consensus      1109 ~~~~~Av~t~DG~v~~~~id~~~~~~~~------------------~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T 1170 (1431)
T KOG1240|consen 1109 NGDQFAVSTKDGSVRVLRIDHYNVSKRV------------------ATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYAT 1170 (1431)
T ss_pred             CCCeEEEEcCCCeEEEEEccccccccce------------------eeeeecccccCCCceEEeecccccccceeEEEEE
Confidence            9999999999999999988642110000                  0011111111 1223232 331  22 2566777


Q ss_pred             cCCcEEEEECCCCceeeeeee---CeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEec-CCCCCeeEEEe
Q 036314          205 WDHSVRTWDVEMGKDLSDIFC---GKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFS-SHNSWISACKW  280 (347)
Q Consensus       205 ~dg~v~vwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~-~h~~~v~~v~~  280 (347)
                      .-+.+..||+++...+-.+..   +..++.++.++. ++.++.|+..|.+.+||+|-..   ++..+. ++..++..+..
T Consensus      1171 ~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~-~~WlviGts~G~l~lWDLRF~~---~i~sw~~P~~~~i~~v~~ 1246 (1431)
T KOG1240|consen 1171 DLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPW-CNWLVIGTSRGQLVLWDLRFRV---PILSWEHPARAPIRHVWL 1246 (1431)
T ss_pred             eccceEEecchhhhhHHhhhcCccccceeEEEecCC-ceEEEEecCCceEEEEEeecCc---eeecccCcccCCcceEEe
Confidence            778899999987654433321   345777877654 5689999999999999998432   233331 33455655555


Q ss_pred             CC---CCCeEEEEEe-CCCcEEEEEcCCCccceeecCC-------------------CCeEEEEeec-CCCEEEEccCCc
Q 036314          281 HN---KSWFHLISAS-YDGKVMLWDLRTAWPLSVIDSH-------------------KDKVLCADWW-RGDSVISGGVDS  336 (347)
Q Consensus       281 s~---~~~~~l~s~s-~D~~i~lwd~~~~~~~~~~~~h-------------------~~~v~~~~~~-~~~~l~s~s~D~  336 (347)
                      +|   .....+.+++ ..+.|-+|++.+|..-.++-.-                   .-......+. .+..+.+|+.|.
T Consensus      1247 ~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~ 1326 (1431)
T KOG1240|consen 1247 CPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDM 1326 (1431)
T ss_pred             eccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCcc
Confidence            44   3334445555 5788999999988544433211                   0011112222 345688999999


Q ss_pred             eEEEeecc
Q 036314          337 KLCVSSGV  344 (347)
Q Consensus       337 ~v~vw~~~  344 (347)
                      .|+.|+-.
T Consensus      1327 kIR~wD~~ 1334 (1431)
T KOG1240|consen 1327 KIRKWDPT 1334 (1431)
T ss_pred             ceeeccCC
Confidence            99999864

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.63  E-value=1.4e-14  Score=130.92  Aligned_cols=236  Identities=19%  Similarity=0.315  Sum_probs=170.9

Q ss_pred             CCCCcCCceeeccCC-CCCEEEEEecCCeEEEEcCC--CeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEE
Q 036314           19 EPSLHDDWVSAVDGS-NPGFILTGCYDNLGRVWKAG--GVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLW   95 (347)
Q Consensus        19 ~~~~h~~~v~~~~~~-~~~~l~sg~~d~~i~iw~~~--~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~w   95 (347)
                      .+.+|++-|.+++.+ +|..+|||+.|..|.+|...  |..   --.|.+.|-++.|.|-.    +.|+|++-. ..-+|
T Consensus        48 tLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~L---kYSH~D~IQCMsFNP~~----h~LasCsLs-dFglW  119 (1081)
T KOG1538|consen   48 PLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGIL---KYSHNDAIQCMSFNPIT----HQLASCSLS-DFGLW  119 (1081)
T ss_pred             ccccccceEEEEEEccCCceeccCCCceeEEEeccccccee---eeccCCeeeEeecCchH----HHhhhcchh-hcccc
Confidence            467999999999988 67799999999999999853  422   22699999999998833    468888765 56788


Q ss_pred             eccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCcccccccc
Q 036314           96 KFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLE  175 (347)
Q Consensus        96 d~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (347)
                      ..+......          . .....|.+++|..||++++-|-.||||.|.+-...+ .                     
T Consensus       120 S~~qK~V~K----------~-kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEe-k---------------------  166 (1081)
T KOG1538|consen  120 SPEQKSVSK----------H-KSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEE-K---------------------  166 (1081)
T ss_pred             ChhhhhHHh----------h-hhheeEEEeeecCCCcEEEEeccCceEEeecCCCCc-c---------------------
Confidence            865322110          0 124557788999999999999999999998543211 0                     


Q ss_pred             ccccccccCCccceEEEEeCC------CCeEEEEecCCcEEEEECCCCceeeee-eeCeeeEEEEeeCCCCcEEEEecCC
Q 036314          176 GEAISTLVGHTQCVSSVVWPQ------QETIYSASWDHSVRTWDVEMGKDLSDI-FCGKALNCIDIGGEGSALIAAGGSD  248 (347)
Q Consensus       176 ~~~~~~~~~h~~~v~~~~~~~------~~~l~s~s~dg~v~vwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~la~~~~d  248 (347)
                       ..+...-|.+.+|++++|.+      .+.++...+..++..|.+. |+.+..- ..+-...|+...+++ .++..|+.|
T Consensus       167 -~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NG-Ey~LiGGsd  243 (1081)
T KOG1538|consen  167 -VKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNG-EYILLGGSD  243 (1081)
T ss_pred             -eEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccccCCCCchhheeccCC-cEEEEccCC
Confidence             01222345678899999832      2468888999999999874 4444321 122345677776655 567788999


Q ss_pred             CcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcC
Q 036314          249 PILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLR  303 (347)
Q Consensus       249 ~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~  303 (347)
                      +.+++|...    ...+-++.....||+.+...|++.+ ++.|+-||+|.-|++-
T Consensus       244 k~L~~fTR~----GvrLGTvg~~D~WIWtV~~~PNsQ~-v~~GCqDGTiACyNl~  293 (1081)
T KOG1538|consen  244 KQLSLFTRD----GVRLGTVGEQDSWIWTVQAKPNSQY-VVVGCQDGTIACYNLI  293 (1081)
T ss_pred             CceEEEeec----CeEEeeccccceeEEEEEEccCCce-EEEEEccCeeehhhhH
Confidence            999999743    2235566667789999999999864 8999999999998764

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.61  E-value=2.6e-14  Score=122.81  Aligned_cols=193  Identities=19%  Similarity=0.208  Sum_probs=134.9

Q ss_pred             EEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEe-CCCCeEE
Q 036314          123 HSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW-PQQETIY  201 (347)
Q Consensus       123 ~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~l~  201 (347)
                      .+++|+.+|..+++|+.||++|+|+.++..                         .+.....|...|.++.| ++++.|+
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~-------------------------t~l~e~~~~~eV~DL~FS~dgk~la  202 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSML-------------------------TILEEIAHHAEVKDLDFSPDGKFLA  202 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcch-------------------------hhhhhHhhcCccccceeCCCCcEEE
Confidence            578999999999999999999999865431                         23344568889999999 5788999


Q ss_pred             EEecCCcEEEEECCCCceeeeeee-Ce--eeEEEEeeCCC---C-cEEEEecCCCcEEEEeCCCCC--CCCCeEEecCCC
Q 036314          202 SASWDHSVRTWDVEMGKDLSDIFC-GK--ALNCIDIGGEG---S-ALIAAGGSDPILRIWDPRKPG--TSAPVFQFSSHN  272 (347)
Q Consensus       202 s~s~dg~v~vwd~~~~~~~~~~~~-~~--~~~~~~~~~~~---~-~~la~~~~d~~i~iwd~~~~~--~~~~~~~~~~h~  272 (347)
                      +.+.| ..+||+++++..+..... .+  ....+-|..++   . .+++.....+.|+.||+..-.  ...+..+...-.
T Consensus       203 sig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~  281 (398)
T KOG0771|consen  203 SIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRF  281 (398)
T ss_pred             EecCC-ceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhcc
Confidence            99999 899999999966544431 11  12222332221   1 223333445667766653211  111222222334


Q ss_pred             CCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceee-cCCCCeEEEEeecCCC-EEEEccCCceEEEee
Q 036314          273 SWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVI-DSHKDKVLCADWWRGD-SVISGGVDSKLCVSS  342 (347)
Q Consensus       273 ~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~-~~h~~~v~~~~~~~~~-~l~s~s~D~~v~vw~  342 (347)
                      +.|++++.+++|. ++|-|+.||.|-|++..+.+.++-. +.|...|+.+.|+|+. ++++.|.|.+..|-.
T Consensus       282 ~siSsl~VS~dGk-f~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~  352 (398)
T KOG0771|consen  282 KSISSLAVSDDGK-FLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTK  352 (398)
T ss_pred             CcceeEEEcCCCc-EEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEE
Confidence            4699999999985 6999999999999999887665543 6899999999998754 688888888776643

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.59  E-value=5.7e-14  Score=124.06  Aligned_cols=170  Identities=14%  Similarity=0.248  Sum_probs=132.2

Q ss_pred             CCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEe-CCCCeEEEEecCCcE
Q 036314          131 GNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW-PQQETIYSASWDHSV  209 (347)
Q Consensus       131 ~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~l~s~s~dg~v  209 (347)
                      ...++-++.||.+.|.+-.                          +...+....|..++.+-.| |+|.-|++++.||.|
T Consensus        75 ~d~~~i~s~DGkf~il~k~--------------------------~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~i  128 (737)
T KOG1524|consen   75 SDTLLICSNDGRFVILNKS--------------------------ARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVI  128 (737)
T ss_pred             cceEEEEcCCceEEEeccc--------------------------chhhhhhhhhhhhhhhcccCCCCceeeeecCCceE
Confidence            4678888999999887532                          1223456778888888888 578889999999999


Q ss_pred             EEEECCCCceeeee-eeCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEE
Q 036314          210 RTWDVEMGKDLSDI-FCGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHL  288 (347)
Q Consensus       210 ~vwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l  288 (347)
                      ++|. ++|....++ +...++.|+++.|+..+.+.+.+  +.+.|=.+...   ..+..+..|.+-|.++.|+|... ++
T Consensus       129 KiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g--~h~~IKpL~~n---~k~i~WkAHDGiiL~~~W~~~s~-lI  201 (737)
T KOG1524|consen  129 KIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIVFCQG--GHISIKPLAAN---SKIIRWRAHDGLVLSLSWSTQSN-II  201 (737)
T ss_pred             EEEe-ccchHHHHHhhcCceeEEEEECCCCCceEEecC--CeEEEeecccc---cceeEEeccCcEEEEeecCcccc-ce
Confidence            9997 566543333 34568999999988877766544  55666555432   23568889999999999999875 79


Q ss_pred             EEEeCCCcEEEEEcCCCccceeecCCCCeEEEEeecCCCEEEEccC
Q 036314          289 ISASYDGKVMLWDLRTAWPLSVIDSHKDKVLCADWWRGDSVISGGV  334 (347)
Q Consensus       289 ~s~s~D~~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~  334 (347)
                      +||++|-..+|||-- |.++..-..|..+|++++|.|+..++.+|.
T Consensus       202 ~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITSva~npd~~~~v~S~  246 (737)
T KOG1524|consen  202 ASGGEDFRFKIWDAQ-GANLFTSAAEEYAITSVAFNPEKDYLLWSY  246 (737)
T ss_pred             eecCCceeEEeeccc-CcccccCChhccceeeeeeccccceeeeee
Confidence            999999999999985 778888889999999999998876776664

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.58  E-value=1.4e-14  Score=123.66  Aligned_cols=179  Identities=23%  Similarity=0.304  Sum_probs=133.8

Q ss_pred             ccceEEEEEeCCCC-EEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEe-CC
Q 036314          119 KASVHSIAAETSGN-MVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW-PQ  196 (347)
Q Consensus       119 ~~~V~~v~~s~~~~-~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~  196 (347)
                      ..+|.++.|.++.. .++||+.|..|+||.+......+...                .-+.+..+..|+.+|+.+.| |+
T Consensus        13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~----------------~V~y~s~Ls~H~~aVN~vRf~p~   76 (434)
T KOG1009|consen   13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDM----------------KVEYLSSLSRHTRAVNVVRFSPD   76 (434)
T ss_pred             CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCce----------------eEEEeecccCCcceeEEEEEcCC
Confidence            45789999988876 99999999999999987654433211                11235578889999999998 68


Q ss_pred             CCeEEEEecCCcEEEEECCCCceeeeeeeCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCee
Q 036314          197 QETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWIS  276 (347)
Q Consensus       197 ~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~  276 (347)
                      ++.|+||+.+|.+.+|-...- .+.              ..+.      -.+.        .++.....+.+.+|.+.|.
T Consensus        77 gelLASg~D~g~v~lWk~~~~-~~~--------------~~d~------e~~~--------~ke~w~v~k~lr~h~~diy  127 (434)
T KOG1009|consen   77 GELLASGGDGGEVFLWKQGDV-RIF--------------DADT------EADL--------NKEKWVVKKVLRGHRDDIY  127 (434)
T ss_pred             cCeeeecCCCceEEEEEecCc-CCc--------------cccc------hhhh--------CccceEEEEEecccccchh
Confidence            899999999999999975430 000              0000      0000        0011122345667999999


Q ss_pred             EEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecCCCCeEEEEeecC-CCEEEEccCCceEEEeec
Q 036314          277 ACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKVLCADWWR-GDSVISGGVDSKLCVSSG  343 (347)
Q Consensus       277 ~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~l~s~s~D~~v~vw~~  343 (347)
                      .++|+|++. ++++++.|..+++||+..|+.+..+.+|..-|..++|-| .+++++=|.|...++.+-
T Consensus       128 dL~Ws~d~~-~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~  194 (434)
T KOG1009|consen  128 DLAWSPDSN-FLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSA  194 (434)
T ss_pred             hhhccCCCc-eeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeee
Confidence            999999985 699999999999999999999999999999999999976 667888888886555443

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.58  E-value=8.8e-13  Score=108.56  Aligned_cols=248  Identities=17%  Similarity=0.179  Sum_probs=161.7

Q ss_pred             CceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEE
Q 036314           65 GAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTIS  144 (347)
Q Consensus        65 ~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~  144 (347)
                      ..++.+.|..-.......++-+-.+|.|.++.....+....   .+++...+-......++.|++.+..++++-.+|.+.
T Consensus        70 s~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~---L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~  146 (339)
T KOG0280|consen   70 STEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVH---LRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSIS  146 (339)
T ss_pred             cccceeeeeeccCCccceeeeccccceEEEEeeccceeeee---ecccchhhhhheeeeEEEeeccCceEEEEcCCCcEE
Confidence            34566666531111113577788899999998654321100   011110000111234677899999999998899888


Q ss_pred             EEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEeC--CCCeEEEEecCCcEEEEECCCCc-eee
Q 036314          145 LWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWP--QQETIYSASWDHSVRTWDVEMGK-DLS  221 (347)
Q Consensus       145 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~l~s~s~dg~v~vwd~~~~~-~~~  221 (347)
                      +-+.....                       -+..++++.|.-+.+-..|+  +.+.+++|+.|+.+..||++.+. .+-
T Consensus       147 ~v~~t~~~-----------------------le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~  203 (339)
T KOG0280|consen  147 GVYETEMV-----------------------LEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIW  203 (339)
T ss_pred             EEecceee-----------------------eeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceee
Confidence            44332211                       12245778898888888775  34678999999999999999433 221


Q ss_pred             e--eeeCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEE
Q 036314          222 D--IFCGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVML  299 (347)
Q Consensus       222 ~--~~~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~l  299 (347)
                      .  ..+...+.++.-+++.+..+++|++|..|++||.|+-+++  ++.- .-.+.|+.+.++|.....|+.++.-.-.+|
T Consensus       204 ~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kP--l~~~-~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki  280 (339)
T KOG0280|consen  204 HNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKP--LFKA-KVGGGVWRIKHHPEIFHRLLAACMHNGAKI  280 (339)
T ss_pred             ecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCc--cccC-ccccceEEEEecchhhhHHHHHHHhcCceE
Confidence            1  1123467778777888889999999999999999965443  3321 233689999999976544555666666888


Q ss_pred             EEcCCCcc-----ceeecCCCCeEEEEeec-CCCEEEEcc-CCceEE-Ee
Q 036314          300 WDLRTAWP-----LSVIDSHKDKVLCADWW-RGDSVISGG-VDSKLC-VS  341 (347)
Q Consensus       300 wd~~~~~~-----~~~~~~h~~~v~~~~~~-~~~~l~s~s-~D~~v~-vw  341 (347)
                      -+...+..     ......|.+-+++.+|. ....|||+| .|+.++ +|
T Consensus       281 ~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~W  330 (339)
T KOG0280|consen  281 LDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLW  330 (339)
T ss_pred             EEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeee
Confidence            88876532     23456788888998993 445699988 588855 77

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.57  E-value=2.7e-13  Score=125.10  Aligned_cols=210  Identities=12%  Similarity=0.105  Sum_probs=134.4

Q ss_pred             CCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCC---CcEEEEecCCCCCCCccceeeeccC
Q 036314           89 DQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWD---CTISLWRTNDSDAAGNQVSIKKRKG  165 (347)
Q Consensus        89 Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~D---g~I~iwd~~~~~~~~~~~~~~~~~~  165 (347)
                      +.+|.+||.+...          ...+..|...+.+.+|+|||+.|+..+.+   ..|++||+.++..            
T Consensus       183 ~~~i~i~d~dg~~----------~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~------------  240 (429)
T PRK01742        183 PYEVRVADYDGFN----------QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGAR------------  240 (429)
T ss_pred             eEEEEEECCCCCC----------ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCce------------
Confidence            5789999987542          23456788889999999999999887654   3699999865321            


Q ss_pred             CCccccccccccccccccCCccceEEEEe-CCCCeEEEE-ecCCcEEEE--ECCCCceeeeeee-CeeeEEEEeeCCCCc
Q 036314          166 NNQVEEPQLEGEAISTLVGHTQCVSSVVW-PQQETIYSA-SWDHSVRTW--DVEMGKDLSDIFC-GKALNCIDIGGEGSA  240 (347)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~l~s~-s~dg~v~vw--d~~~~~~~~~~~~-~~~~~~~~~~~~~~~  240 (347)
                                 +.+..+.+|..   .+.| |+++.|+.+ +.+|.+.||  |+.++.. ..+.. ........|+|++..
T Consensus       241 -----------~~l~~~~g~~~---~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~  305 (429)
T PRK01742        241 -----------KVVASFRGHNG---APAFSPDGSRLAFASSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQS  305 (429)
T ss_pred             -----------EEEecCCCccC---ceeECCCCCEEEEEEecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEECCCCCE
Confidence                       11222333332   3566 677877765 468877666  6555543 33332 223556788777665


Q ss_pred             EEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecCCCCeEEE
Q 036314          241 LIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKVLC  320 (347)
Q Consensus       241 ~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h~~~v~~  320 (347)
                      +++++..++...||++...+..  ...+ .+..  ....|+|++.. |+.++.++ +.+||+.+++.......+  ....
T Consensus       306 i~f~s~~~g~~~I~~~~~~~~~--~~~l-~~~~--~~~~~SpDG~~-ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~  376 (429)
T PRK01742        306 ILFTSDRSGSPQVYRMSASGGG--ASLV-GGRG--YSAQISADGKT-LVMINGDN-VVKQDLTSGSTEVLSSTF--LDES  376 (429)
T ss_pred             EEEEECCCCCceEEEEECCCCC--eEEe-cCCC--CCccCCCCCCE-EEEEcCCC-EEEEECCCCCeEEecCCC--CCCC
Confidence            6556666788899987542221  2222 3433  35789999975 66666665 556999887643322222  2345


Q ss_pred             EeecC-CCEEEEccCCceEEEeecc
Q 036314          321 ADWWR-GDSVISGGVDSKLCVSSGV  344 (347)
Q Consensus       321 ~~~~~-~~~l~s~s~D~~v~vw~~~  344 (347)
                      +.|+| |+.|+.++.++.+.+|...
T Consensus       377 ~~~sPdG~~i~~~s~~g~~~~l~~~  401 (429)
T PRK01742        377 PSISPNGIMIIYSSTQGLGKVLQLV  401 (429)
T ss_pred             ceECCCCCEEEEEEcCCCceEEEEE
Confidence            77875 6788988889988887643

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.56  E-value=1.3e-13  Score=120.40  Aligned_cols=252  Identities=19%  Similarity=0.274  Sum_probs=177.0

Q ss_pred             EEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCC--CCEEE
Q 036314           58 HILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETS--GNMVC  135 (347)
Q Consensus        58 ~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~--~~~l~  135 (347)
                      ..|..|.+.|+.|.|...    +..|+|+|.|..|.+||...+...        +.-..||...|....|-|.  .+.++
T Consensus       136 ~kL~~H~GcVntV~FN~~----Gd~l~SgSDD~~vv~WdW~~~~~~--------l~f~SGH~~NvfQaKFiP~s~d~ti~  203 (559)
T KOG1334|consen  136 KKLNKHKGCVNTVHFNQR----GDVLASGSDDLQVVVWDWVSGSPK--------LSFESGHCNNVFQAKFIPFSGDRTIV  203 (559)
T ss_pred             hcccCCCCccceeeeccc----CceeeccCccceEEeehhhccCcc--------cccccccccchhhhhccCCCCCcCce
Confidence            468899999999999773    457999999999999998765421        1223578888887777664  36889


Q ss_pred             EeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEe-CCC-CeEEEEecCCcEEEEE
Q 036314          136 SGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW-PQQ-ETIYSASWDHSVRTWD  213 (347)
Q Consensus       136 sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~-~~l~s~s~dg~v~vwd  213 (347)
                      +++.||.+++=.+.....                    .+  -...+..|.+.|..++. |.. ..|+|++.|+.+.-.|
T Consensus       204 ~~s~dgqvr~s~i~~t~~--------------------~e--~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~D  261 (559)
T KOG1334|consen  204 TSSRDGQVRVSEILETGY--------------------VE--NTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHID  261 (559)
T ss_pred             eccccCceeeeeeccccc--------------------ee--cceecccccCccceeeecCCCCCcccccccccceeeee
Confidence            999999999865432110                    00  01234457788888876 433 4589999999999999


Q ss_pred             CCCCceeeeeeeC----e---eeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCC---CCeEEecCCC------CCeeE
Q 036314          214 VEMGKDLSDIFCG----K---ALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTS---APVFQFSSHN------SWISA  277 (347)
Q Consensus       214 ~~~~~~~~~~~~~----~---~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~---~~~~~~~~h~------~~v~~  277 (347)
                      ++.+.+...+.+.    .   ....++..|.+.+.+|+|+.|..+++||.+.....   ..+..+..|.      -.|++
T Consensus       262 lr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITg  341 (559)
T KOG1334|consen  262 LRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITG  341 (559)
T ss_pred             eccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCccccee
Confidence            9987765554331    1   35677888888888999999999999998753211   1122332222      25899


Q ss_pred             EEeCCCCCeEEEEEeCCCcEEEEEcCC--C----------ccce-eecCCCC--eEEEEeec-C-CCEEEEccCCceEEE
Q 036314          278 CKWHNKSWFHLISASYDGKVMLWDLRT--A----------WPLS-VIDSHKD--KVLCADWW-R-GDSVISGGVDSKLCV  340 (347)
Q Consensus       278 v~~s~~~~~~l~s~s~D~~i~lwd~~~--~----------~~~~-~~~~h~~--~v~~~~~~-~-~~~l~s~s~D~~v~v  340 (347)
                      ++|+.++.. |+++=.|-.|.++.-.-  |          ..++ .+.||.+  .|.+|-|. | ..+++|||.-|.|.|
T Consensus       342 l~Ysh~~sE-lLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFi  420 (559)
T KOG1334|consen  342 LVYSHDGSE-LLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFI  420 (559)
T ss_pred             EEecCCccc-eeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEE
Confidence            999977766 44455677788884332  2          1122 3778875  57789996 4 668999999999999


Q ss_pred             eecc
Q 036314          341 SSGV  344 (347)
Q Consensus       341 w~~~  344 (347)
                      |+-.
T Consensus       421 W~K~  424 (559)
T KOG1334|consen  421 WDKK  424 (559)
T ss_pred             Eecc
Confidence            9853

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.54  E-value=9.8e-12  Score=114.63  Aligned_cols=232  Identities=13%  Similarity=0.106  Sum_probs=141.6

Q ss_pred             eEEEEcCCCeEEEEeeccCCceEEEEEeecCCCceEEEEEc---cCCCcEEEEeccccccccCccccceeeeeeccccce
Q 036314           46 LGRVWKAGGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATA---SKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASV  122 (347)
Q Consensus        46 ~i~iw~~~~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~---s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V  122 (347)
                      .+.+||..|...+.+..+...+.+.+|+|++.    .|+..   +.+..|.+|++.+++.       +.+..+.+|   +
T Consensus       180 ~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~----~la~~s~~~g~~~i~i~dl~~G~~-------~~l~~~~~~---~  245 (429)
T PRK03629        180 ELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGS----KLAYVTFESGRSALVIQTLANGAV-------RQVASFPRH---N  245 (429)
T ss_pred             eEEEEcCCCCCCEEeecCCCceeeeEEcCCCC----EEEEEEecCCCcEEEEEECCCCCe-------EEccCCCCC---c
Confidence            68888887765566667777899999999653    34433   2345799999876542       122223333   4


Q ss_pred             EEEEEeCCCCEEEE-eeCCC--cEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEe-CCCC
Q 036314          123 HSIAAETSGNMVCS-GSWDC--TISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW-PQQE  198 (347)
Q Consensus       123 ~~v~~s~~~~~l~s-gs~Dg--~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~  198 (347)
                      ...+|+|||+.|+. .+.++  .|.+||+.++..                          ..+..+...+....| |+++
T Consensus       246 ~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~--------------------------~~lt~~~~~~~~~~wSPDG~  299 (429)
T PRK03629        246 GAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI--------------------------RQVTDGRSNNTEPTWFPDSQ  299 (429)
T ss_pred             CCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCE--------------------------EEccCCCCCcCceEECCCCC
Confidence            46789999987764 45555  477788764321                          111122223445566 5778


Q ss_pred             eEEEEecC-CcEEEE--ECCCCceeeeeee-CeeeEEEEeeCCCCcEEEEecCC--CcEEEEeCCCCCCCCCeEEecCCC
Q 036314          199 TIYSASWD-HSVRTW--DVEMGKDLSDIFC-GKALNCIDIGGEGSALIAAGGSD--PILRIWDPRKPGTSAPVFQFSSHN  272 (347)
Q Consensus       199 ~l~s~s~d-g~v~vw--d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~la~~~~d--~~i~iwd~~~~~~~~~~~~~~~h~  272 (347)
                      .|+.++.+ +..+||  |+.++.. ..+.. ........++|++..++.++..+  ..|.+||+....    ...+... 
T Consensus       300 ~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~----~~~Lt~~-  373 (429)
T PRK03629        300 NLAYTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG----VQVLTDT-  373 (429)
T ss_pred             EEEEEeCCCCCceEEEEECCCCCe-EEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCC----eEEeCCC-
Confidence            78766654 455555  6655543 33322 22344567777665554444433  357888886432    2233322 


Q ss_pred             CCeeEEEeCCCCCeEEEEEeCCCc---EEEEEcCCCccceeecCCCCeEEEEeecC
Q 036314          273 SWISACKWHNKSWFHLISASYDGK---VMLWDLRTAWPLSVIDSHKDKVLCADWWR  325 (347)
Q Consensus       273 ~~v~~v~~s~~~~~~l~s~s~D~~---i~lwd~~~~~~~~~~~~h~~~v~~~~~~~  325 (347)
                      .......|+|||.. |+.++.++.   +.+++++ +.....+.+|.+.+...+|+|
T Consensus       374 ~~~~~p~~SpDG~~-i~~~s~~~~~~~l~~~~~~-G~~~~~l~~~~~~~~~p~Wsp  427 (429)
T PRK03629        374 FLDETPSIAPNGTM-VIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSP  427 (429)
T ss_pred             CCCCCceECCCCCE-EEEEEcCCCceEEEEEECC-CCCeEECccCCCCcCCcccCC
Confidence            12346789999975 666776654   6777874 556677778888899899975

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.54  E-value=2.5e-11  Score=108.49  Aligned_cols=249  Identities=12%  Similarity=0.168  Sum_probs=141.7

Q ss_pred             CceeeccCC-CCCEEEEEe-cCCeEEEEcCC--CeEEE-EeeccCCceEEEEEeecCCCceEEEEEc-cCCCcEEEEecc
Q 036314           25 DWVSAVDGS-NPGFILTGC-YDNLGRVWKAG--GVCTH-ILEGHCGAVSSVNIIKSDGLKYVTVATA-SKDQTLRLWKFD   98 (347)
Q Consensus        25 ~~v~~~~~~-~~~~l~sg~-~d~~i~iw~~~--~~~~~-~l~~h~~~V~~v~~~~~~~~~~~~l~s~-s~Dg~v~~wd~~   98 (347)
                      +....+.++ ++++|+.++ .++.|.+|+..  +.... .-....+....+.|+|++.    .|+++ ..++.|.+|+++
T Consensus        35 ~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~g~----~l~v~~~~~~~v~v~~~~  110 (330)
T PRK11028         35 GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHISTDHQGR----FLFSASYNANCVSVSPLD  110 (330)
T ss_pred             CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEEEECCCCC----EEEEEEcCCCeEEEEEEC
Confidence            445566766 456665554 57889999864  32211 1111234567888988543    34444 458899999986


Q ss_pred             ccccccCccccceeeeeeccccceEEEEEeCCCCEEE-EeeCCCcEEEEecCCCCCCCccceeeeccCCCcccccccccc
Q 036314           99 AEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVC-SGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGE  177 (347)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~-sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (347)
                      ......     +....+. +....++++++|++++++ +...++.|.+||+.+........                 ..
T Consensus       111 ~~g~~~-----~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~-----------------~~  167 (330)
T PRK11028        111 KDGIPV-----APIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQE-----------------PA  167 (330)
T ss_pred             CCCCCC-----Cceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccC-----------------CC
Confidence            432110     1122222 234467789999998885 45567999999986521100000                 00


Q ss_pred             ccccccCCccceEEEEe-CCCCeEEEEec-CCcEEEEECCC--Cc--eeeeeee--C-----eeeEEEEeeCCCCcEEEE
Q 036314          178 AISTLVGHTQCVSSVVW-PQQETIYSASW-DHSVRTWDVEM--GK--DLSDIFC--G-----KALNCIDIGGEGSALIAA  244 (347)
Q Consensus       178 ~~~~~~~h~~~v~~~~~-~~~~~l~s~s~-dg~v~vwd~~~--~~--~~~~~~~--~-----~~~~~~~~~~~~~~~la~  244 (347)
                      ......+  .....+.| |++++++++.. +++|.+||+..  +.  .+..+..  .     .....+.++|++..++++
T Consensus       168 ~~~~~~g--~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~  245 (330)
T PRK11028        168 EVTTVEG--AGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYAC  245 (330)
T ss_pred             ceecCCC--CCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEe
Confidence            0000011  12334555 67788877765 89999999973  22  1222211  0     011246676665544444


Q ss_pred             ecCCCcEEEEeCCCCCCCC-CeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcC
Q 036314          245 GGSDPILRIWDPRKPGTSA-PVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLR  303 (347)
Q Consensus       245 ~~~d~~i~iwd~~~~~~~~-~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~  303 (347)
                      ...++.|.+|++...+... ....... ......+.++|++.+++++...+++|.+|+++
T Consensus       246 ~~~~~~I~v~~i~~~~~~~~~~~~~~~-~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~  304 (330)
T PRK11028        246 DRTASLISVFSVSEDGSVLSFEGHQPT-ETQPRGFNIDHSGKYLIAAGQKSHHISVYEID  304 (330)
T ss_pred             cCCCCeEEEEEEeCCCCeEEEeEEEec-cccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence            4558899999986432111 1111111 12456789999998755565569999999885

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.51  E-value=5.2e-13  Score=114.88  Aligned_cols=196  Identities=20%  Similarity=0.273  Sum_probs=127.0

Q ss_pred             EEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEe
Q 036314           68 SSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWR  147 (347)
Q Consensus        68 ~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd  147 (347)
                      ..++|.+++    ..|++++.||++|+|+.+..+         .+.....|...|.++.|+|||++|++-+.| ..+||+
T Consensus       148 k~vaf~~~g----s~latgg~dg~lRv~~~Ps~~---------t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~  213 (398)
T KOG0771|consen  148 KVVAFNGDG----SKLATGGTDGTLRVWEWPSML---------TILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWS  213 (398)
T ss_pred             eEEEEcCCC----CEeeeccccceEEEEecCcch---------hhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEE
Confidence            456777644    369999999999999965432         222345789999999999999999999999 999999


Q ss_pred             cCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEeCC---CC--eEE-EEecCCcEEEEECCCCce--
Q 036314          148 TNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWPQ---QE--TIY-SASWDHSVRTWDVEMGKD--  219 (347)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~~--~l~-s~s~dg~v~vwd~~~~~~--  219 (347)
                      ++++.......          +....+             -...+-|..   ++  +++ ....-+.|+.||+..-+.  
T Consensus       214 ~~~g~~~a~~t----------~~~k~~-------------~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~  270 (398)
T KOG0771|consen  214 VNTGAALARKT----------PFSKDE-------------MFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSN  270 (398)
T ss_pred             eccCchhhhcC----------Ccccch-------------hhhhceecccCCCceEEEEEecCCCCceeEEEeeeecccc
Confidence            98763211100          000000             001111211   11  122 222233455555432111  


Q ss_pred             ---e-eeeeeCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCC
Q 036314          220 ---L-SDIFCGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDG  295 (347)
Q Consensus       220 ---~-~~~~~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~  295 (347)
                         . ..+...+.+.+++.+ +++.++|.|+.||.|.|++...-..  ....-..|...|+.+.|+|+.++ +++.+.|.
T Consensus       271 ~l~~~~~~~~~~siSsl~VS-~dGkf~AlGT~dGsVai~~~~~lq~--~~~vk~aH~~~VT~ltF~Pdsr~-~~svSs~~  346 (398)
T KOG0771|consen  271 FLRLRKKIKRFKSISSLAVS-DDGKFLALGTMDGSVAIYDAKSLQR--LQYVKEAHLGFVTGLTFSPDSRY-LASVSSDN  346 (398)
T ss_pred             ccchhhhhhccCcceeEEEc-CCCcEEEEeccCCcEEEEEeceeee--eEeehhhheeeeeeEEEcCCcCc-ccccccCC
Confidence               1 111223468889985 4567999999999999999864321  23344678899999999999864 89999999


Q ss_pred             cEEEEEcCC
Q 036314          296 KVMLWDLRT  304 (347)
Q Consensus       296 ~i~lwd~~~  304 (347)
                      +++|..+.-
T Consensus       347 ~~~v~~l~v  355 (398)
T KOG0771|consen  347 EAAVTKLAV  355 (398)
T ss_pred             ceeEEEEee
Confidence            999987754

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.50  E-value=1.1e-11  Score=114.25  Aligned_cols=235  Identities=13%  Similarity=0.105  Sum_probs=139.6

Q ss_pred             CeEEEEcCCCeEEEEeeccCCceEEEEEeecCCCceEEEEEccC---CCcEEEEeccccccccCccccceeeeeeccccc
Q 036314           45 NLGRVWKAGGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASK---DQTLRLWKFDAEELVNHPKKIRSFKILRGHKAS  121 (347)
Q Consensus        45 ~~i~iw~~~~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~---Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~  121 (347)
                      ..+.+||..|...+.+..+...+.+.+|+|++.    .|+..+.   ...|.+||+.+++.          ..+......
T Consensus       176 ~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~----~la~~s~~~~~~~I~~~dl~~g~~----------~~l~~~~g~  241 (427)
T PRK02889        176 YQLQISDADGQNAQSALSSPEPIISPAWSPDGT----KLAYVSFESKKPVVYVHDLATGRR----------RVVANFKGS  241 (427)
T ss_pred             cEEEEECCCCCCceEeccCCCCcccceEcCCCC----EEEEEEccCCCcEEEEEECCCCCE----------EEeecCCCC
Confidence            367777877766666777888899999999553    4554443   24599999976642          112223344


Q ss_pred             eEEEEEeCCCCEEE-EeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEe-CCCCe
Q 036314          122 VHSIAAETSGNMVC-SGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW-PQQET  199 (347)
Q Consensus       122 V~~v~~s~~~~~l~-sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~  199 (347)
                      +.+.+|+|||+.|+ +.+.|+...||.++...                        .....+..+........| |+++.
T Consensus       242 ~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~------------------------~~~~~lt~~~~~~~~~~wSpDG~~  297 (427)
T PRK02889        242 NSAPAWSPDGRTLAVALSRDGNSQIYTVNADG------------------------SGLRRLTQSSGIDTEPFFSPDGRS  297 (427)
T ss_pred             ccceEECCCCCEEEEEEccCCCceEEEEECCC------------------------CCcEECCCCCCCCcCeEEcCCCCE
Confidence            56789999998775 67889988888653210                        001122223223344556 57787


Q ss_pred             EEEEec-CCcEEEEEC--CCCceeeeee-eCeeeEEEEeeCCCCcEEEEecCCC---cEEEEeCCCCCCCCCeEEecCCC
Q 036314          200 IYSASW-DHSVRTWDV--EMGKDLSDIF-CGKALNCIDIGGEGSALIAAGGSDP---ILRIWDPRKPGTSAPVFQFSSHN  272 (347)
Q Consensus       200 l~s~s~-dg~v~vwd~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~la~~~~d~---~i~iwd~~~~~~~~~~~~~~~h~  272 (347)
                      |+.++. ++...+|.+  ..+. ...+. .+.......++|++. .++..+.++   .|.+||+....    ...+..+ 
T Consensus       298 l~f~s~~~g~~~Iy~~~~~~g~-~~~lt~~g~~~~~~~~SpDG~-~Ia~~s~~~g~~~I~v~d~~~g~----~~~lt~~-  370 (427)
T PRK02889        298 IYFTSDRGGAPQIYRMPASGGA-AQRVTFTGSYNTSPRISPDGK-LLAYISRVGGAFKLYVQDLATGQ----VTALTDT-  370 (427)
T ss_pred             EEEEecCCCCcEEEEEECCCCc-eEEEecCCCCcCceEECCCCC-EEEEEEccCCcEEEEEEECCCCC----eEEccCC-
Confidence            776554 466777755  3333 22222 222233456766655 454443332   69999986432    2233222 


Q ss_pred             CCeeEEEeCCCCCeEEEEEeCCCc--EEEEEcCCCccceeecCCCCeEEEEeecC
Q 036314          273 SWISACKWHNKSWFHLISASYDGK--VMLWDLRTAWPLSVIDSHKDKVLCADWWR  325 (347)
Q Consensus       273 ~~v~~v~~s~~~~~~l~s~s~D~~--i~lwd~~~~~~~~~~~~h~~~v~~~~~~~  325 (347)
                      .......|+|++..++.+...++.  +.+.+++ +.....+..+.+.+...+|+|
T Consensus       371 ~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~-g~~~~~l~~~~g~~~~p~wsp  424 (427)
T PRK02889        371 TRDESPSFAPNGRYILYATQQGGRSVLAAVSSD-GRIKQRLSVQGGDVREPSWGP  424 (427)
T ss_pred             CCccCceECCCCCEEEEEEecCCCEEEEEEECC-CCceEEeecCCCCCCCCccCC
Confidence            334678999999865555545544  4444563 555556666777788888875

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.49  E-value=1.1e-11  Score=114.59  Aligned_cols=235  Identities=13%  Similarity=0.099  Sum_probs=140.8

Q ss_pred             CeEEEEcCCCeEEEEeeccCCceEEEEEeecCCCceEEEEEccC---CCcEEEEeccccccccCccccceeeeeeccccc
Q 036314           45 NLGRVWKAGGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASK---DQTLRLWKFDAEELVNHPKKIRSFKILRGHKAS  121 (347)
Q Consensus        45 ~~i~iw~~~~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~---Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~  121 (347)
                      .+|.+||..+...+.+..|...+.+.+|+|++.    .|+..+.   +..|.+||+.+++.          ..+..+...
T Consensus       184 ~~l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~----~la~~s~~~~~~~l~~~dl~~g~~----------~~l~~~~g~  249 (433)
T PRK04922        184 YALQVADSDGYNPQTILRSAEPILSPAWSPDGK----KLAYVSFERGRSAIYVQDLATGQR----------ELVASFRGI  249 (433)
T ss_pred             EEEEEECCCCCCceEeecCCCccccccCCCCCC----EEEEEecCCCCcEEEEEECCCCCE----------EEeccCCCC
Confidence            368899987776667777888899999999553    4555543   34699999876542          122233334


Q ss_pred             eEEEEEeCCCCEEE-EeeCCC--cEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEe-CCC
Q 036314          122 VHSIAAETSGNMVC-SGSWDC--TISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW-PQQ  197 (347)
Q Consensus       122 V~~v~~s~~~~~l~-sgs~Dg--~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~  197 (347)
                      ..+.+|+|||+.++ +.+.++  .|.+||+.++..                          ..+..+........| +++
T Consensus       250 ~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~--------------------------~~lt~~~~~~~~~~~spDG  303 (433)
T PRK04922        250 NGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQL--------------------------TRLTNHFGIDTEPTWAPDG  303 (433)
T ss_pred             ccCceECCCCCEEEEEEeCCCCceEEEEECCCCCe--------------------------EECccCCCCccceEECCCC
Confidence            45679999998664 666666  488888765321                          112222222344566 577


Q ss_pred             CeEEEEec-CCc--EEEEECCCCceeeeeeeCeeeEEEEeeCCCCcEEEEecCCC--cEEEEeCCCCCCCCCeEEecCCC
Q 036314          198 ETIYSASW-DHS--VRTWDVEMGKDLSDIFCGKALNCIDIGGEGSALIAAGGSDP--ILRIWDPRKPGTSAPVFQFSSHN  272 (347)
Q Consensus       198 ~~l~s~s~-dg~--v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~d~--~i~iwd~~~~~~~~~~~~~~~h~  272 (347)
                      +.|+.++. ++.  |.++|+.+++.......+......+++|++..++++...++  .|.+||+... .   ...+. +.
T Consensus       304 ~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g-~---~~~Lt-~~  378 (433)
T PRK04922        304 KSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTG-S---VRTLT-PG  378 (433)
T ss_pred             CEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCC-C---eEECC-CC
Confidence            77776654 444  55567666543221122223345678776654444433333  6899998642 2   22332 33


Q ss_pred             CCeeEEEeCCCCCeEEEEEeCC--CcEEEEEcCCCccceeecCCCCeEEEEeecC
Q 036314          273 SWISACKWHNKSWFHLISASYD--GKVMLWDLRTAWPLSVIDSHKDKVLCADWWR  325 (347)
Q Consensus       273 ~~v~~v~~s~~~~~~l~s~s~D--~~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~  325 (347)
                      .......|+|++..++.+....  +.+.+++++. .....+..+.+.+...+|+|
T Consensus       379 ~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g-~~~~~l~~~~g~~~~p~wsp  432 (433)
T PRK04922        379 SLDESPSFAPNGSMVLYATREGGRGVLAAVSTDG-RVRQRLVSADGEVREPAWSP  432 (433)
T ss_pred             CCCCCceECCCCCEEEEEEecCCceEEEEEECCC-CceEEcccCCCCCCCCccCC
Confidence            3455678999997644444433  3577778854 44555655666777778865

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.49  E-value=1.5e-13  Score=121.68  Aligned_cols=168  Identities=21%  Similarity=0.320  Sum_probs=123.7

Q ss_pred             eeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEE
Q 036314          113 KILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSV  192 (347)
Q Consensus       113 ~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~  192 (347)
                      +.|.||++-|+++.|+.+|.+|+|||.|-.+.|||.-..+.                        ....-.||+.-|.++
T Consensus        44 ~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kl------------------------lhsI~TgHtaNIFsv   99 (758)
T KOG1310|consen   44 AELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKL------------------------LHSISTGHTANIFSV   99 (758)
T ss_pred             hhhccccceecceeecCCCCEEeecCCcceEEeecchhcce------------------------eeeeecccccceeEE
Confidence            35789999999999999999999999999999998642110                        011235799999999


Q ss_pred             Ee-C--CCCeEEEEecCCcEEEEECCCCce----------eeeeeeC-eeeEEEEeeCCCCcEEEEecCCCcEEEEeCCC
Q 036314          193 VW-P--QQETIYSASWDHSVRTWDVEMGKD----------LSDIFCG-KALNCIDIGGEGSALIAAGGSDPILRIWDPRK  258 (347)
Q Consensus       193 ~~-~--~~~~l~s~s~dg~v~vwd~~~~~~----------~~~~~~~-~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~  258 (347)
                      .| |  .+..++||+.|..|+++|+...+.          ...+.++ ..+.-++..+.+++.+-++++||+++-+|+|.
T Consensus       100 KFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiRE  179 (758)
T KOG1310|consen  100 KFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIRE  179 (758)
T ss_pred             eeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccC
Confidence            88 4  456789999999999999974221          1111221 24556677777778999999999999999986


Q ss_pred             CCCCCCe-------EEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCC
Q 036314          259 PGTSAPV-------FQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRT  304 (347)
Q Consensus       259 ~~~~~~~-------~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~  304 (347)
                      +....+.       ..+.+.--...++..+|..+++||.|+.|--.+|||.|.
T Consensus       180 ph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr  232 (758)
T KOG1310|consen  180 PHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRR  232 (758)
T ss_pred             CccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhh
Confidence            4322111       111111123567899999999999999999999999653

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.48  E-value=6.2e-11  Score=110.75  Aligned_cols=289  Identities=18%  Similarity=0.236  Sum_probs=175.8

Q ss_pred             ccCCCCCEEEEEecCCeEEEEcC-CCeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccc
Q 036314           30 VDGSNPGFILTGCYDNLGRVWKA-GGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKK  108 (347)
Q Consensus        30 ~~~~~~~~l~sg~~d~~i~iw~~-~~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~  108 (347)
                      ..|+++...+-+..+.+|.+|-. +|.|++.|.+|..++..+.+.|.... -..+.+++.||+|++||...+.++     
T Consensus        22 avfSnD~k~l~~~~~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~-~~~~~~~sl~G~I~vwd~~~~~Ll-----   95 (792)
T KOG1963|consen   22 AVFSNDAKFLFLCTGNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSEN-ANYLIVCSLDGTIRVWDWSDGELL-----   95 (792)
T ss_pred             cccccCCcEEEEeeCCEEEEEecchHhhhhhcccccCccceeeecCCCcc-ceEEEEEecCccEEEecCCCcEEE-----
Confidence            34787776666677889999985 68899999999999999999875542 235779999999999998876543     


Q ss_pred             cceeeeeeccccceEEEEEeC----CCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccC
Q 036314          109 IRSFKILRGHKASVHSIAAET----SGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVG  184 (347)
Q Consensus       109 ~~~~~~~~~h~~~V~~v~~s~----~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (347)
                          +++.. ..++.++.+.|    ....+..+..|..  +........... .        ...............+..
T Consensus        96 ----kt~~~-~~~v~~~~~~~~~a~~s~~~~~s~~~~~--~~~~~s~~~~~q-~--------~~~~~~t~~~~~~d~~~~  159 (792)
T KOG1963|consen   96 ----KTFDN-NLPVHALVYKPAQADISANVYVSVEDYS--ILTTFSKKLSKQ-S--------SRFVLATFDSAKGDFLKE  159 (792)
T ss_pred             ----EEEec-CCceeEEEechhHhCccceeEeecccce--eeeecccccccc-e--------eeeEeeeccccchhhhhh
Confidence                33332 22333333321    1111111222211  111100000000 0        000000001111112222


Q ss_pred             CccceEEEEeCCCCeEEEEecCCcEEEEECCCCceee---e--eeeCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCC-
Q 036314          185 HTQCVSSVVWPQQETIYSASWDHSVRTWDVEMGKDLS---D--IFCGKALNCIDIGGEGSALIAAGGSDPILRIWDPRK-  258 (347)
Q Consensus       185 h~~~v~~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~-  258 (347)
                      |.. -.++.+.+...+...-.+..+.+|+........   .  ..+....+|.+++|. ++.+|++..||+|.+|.-.. 
T Consensus       160 ~~~-~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn-~~~~Aa~d~dGrI~vw~d~~~  237 (792)
T KOG1963|consen  160 HQE-PKSIVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPN-ERYLAAGDSDGRILVWRDFGS  237 (792)
T ss_pred             hcC-CccEEEcCCceEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccc-cceEEEeccCCcEEEEecccc
Confidence            322 133444454555555667788999887643111   0  111224688999765 56889999999999996332 


Q ss_pred             CCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecCCCCeEEEEeecC-CCEEEEccCCce
Q 036314          259 PGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKVLCADWWR-GDSVISGGVDSK  337 (347)
Q Consensus       259 ~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~l~s~s~D~~  337 (347)
                      .........+.-|.+.|.+++|+++|.+ |.||+..+.+-+|.+.+++ .+-+-.=.+.|+.+.++| +...+..-.|..
T Consensus       238 ~~~~~t~t~lHWH~~~V~~L~fS~~G~~-LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNq  315 (792)
T KOG1963|consen  238 SDDSETCTLLHWHHDEVNSLSFSSDGAY-LLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQ  315 (792)
T ss_pred             ccccccceEEEecccccceeEEecCCce-EeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCce
Confidence            1222234566779999999999999975 9999999999999999886 222223356889999985 556666667888


Q ss_pred             EEEeecc
Q 036314          338 LCVSSGV  344 (347)
Q Consensus       338 v~vw~~~  344 (347)
                      |.+=.++
T Consensus       316 I~li~~~  322 (792)
T KOG1963|consen  316 IHLIKAS  322 (792)
T ss_pred             EEEEecc
Confidence            8876664

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.47  E-value=7.5e-11  Score=109.25  Aligned_cols=232  Identities=10%  Similarity=0.056  Sum_probs=140.2

Q ss_pred             eEEEEcCCCeEEEEeeccCCceEEEEEeecCCCceEEEEEcc---CCCcEEEEeccccccccCccccceeeeeeccccce
Q 036314           46 LGRVWKAGGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATAS---KDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASV  122 (347)
Q Consensus        46 ~i~iw~~~~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s---~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V  122 (347)
                      .|.+||..|...+.+..|...+.+.+|+|++.    .|+..+   .+..|.+||+.+++.          ..+..+...+
T Consensus       183 ~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~----~lay~s~~~g~~~i~~~dl~~g~~----------~~l~~~~g~~  248 (435)
T PRK05137        183 RLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQ----EITYMSYANGRPRVYLLDLETGQR----------ELVGNFPGMT  248 (435)
T ss_pred             EEEEECCCCCCcEEEecCCCCeEeeEECCCCC----EEEEEEecCCCCEEEEEECCCCcE----------EEeecCCCcc
Confidence            68888887777777888888999999999553    455443   346899999976542          2344556667


Q ss_pred             EEEEEeCCCCEE-EEeeCCCc--EEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEe-CCCC
Q 036314          123 HSIAAETSGNMV-CSGSWDCT--ISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW-PQQE  198 (347)
Q Consensus       123 ~~v~~s~~~~~l-~sgs~Dg~--I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~  198 (347)
                      .+.+|+|||+.| ++.+.++.  |.+||+.++.                          ...+..+........| |+++
T Consensus       249 ~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~--------------------------~~~Lt~~~~~~~~~~~spDG~  302 (435)
T PRK05137        249 FAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGT--------------------------TTRLTDSPAIDTSPSYSPDGS  302 (435)
T ss_pred             cCcEECCCCCEEEEEEecCCCceEEEEECCCCc--------------------------eEEccCCCCccCceeEcCCCC
Confidence            788999999866 46677776  5555665431                          1122223333444566 5777


Q ss_pred             eEEEEec-CC--cEEEEECCCCceeeeeee-CeeeEEEEeeCCCCcEEEEecCC--CcEEEEeCCCCCCCCCeEEecCCC
Q 036314          199 TIYSASW-DH--SVRTWDVEMGKDLSDIFC-GKALNCIDIGGEGSALIAAGGSD--PILRIWDPRKPGTSAPVFQFSSHN  272 (347)
Q Consensus       199 ~l~s~s~-dg--~v~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~la~~~~d--~~i~iwd~~~~~~~~~~~~~~~h~  272 (347)
                      .|+..+. ++  .|.++|+..+.. ..+.. ........++|++..++.+....  ..|.+||+... .   ...+. ..
T Consensus       303 ~i~f~s~~~g~~~Iy~~d~~g~~~-~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~-~---~~~lt-~~  376 (435)
T PRK05137        303 QIVFESDRSGSPQLYVMNADGSNP-RRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGS-G---ERILT-SG  376 (435)
T ss_pred             EEEEEECCCCCCeEEEEECCCCCe-EEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCC-c---eEecc-CC
Confidence            7776653 33  577778766543 33332 22344567777665544443222  46788887532 1   22222 22


Q ss_pred             CCeeEEEeCCCCCeEEEEEeCC-----CcEEEEEcCCCccceeecCCCCeEEEEeecC
Q 036314          273 SWISACKWHNKSWFHLISASYD-----GKVMLWDLRTAWPLSVIDSHKDKVLCADWWR  325 (347)
Q Consensus       273 ~~v~~v~~s~~~~~~l~s~s~D-----~~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~  325 (347)
                      ..+....|+||+..++.++...     ..+.+.|++.+. ...+. ..+.+...+|+|
T Consensus       377 ~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~-~~~l~-~~~~~~~p~Wsp  432 (435)
T PRK05137        377 FLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRN-EREVP-TPGDASDPAWSP  432 (435)
T ss_pred             CCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCc-eEEcc-CCCCccCcccCC
Confidence            2466789999997644444433     257777886544 34443 244566667764

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.43  E-value=4.9e-13  Score=116.32  Aligned_cols=228  Identities=14%  Similarity=0.209  Sum_probs=159.7

Q ss_pred             EEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEe
Q 036314           68 SSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWR  147 (347)
Q Consensus        68 ~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd  147 (347)
                      ..+.+..    ++.+|+.|+.-|.|..+|..+..+..         .+. -...|.++.|-++.+++|. ....-+.|||
T Consensus       133 Y~~~ytr----nGrhlllgGrKGHlAa~Dw~t~~L~~---------Ei~-v~Etv~Dv~~LHneq~~AV-AQK~y~yvYD  197 (545)
T KOG1272|consen  133 YHLDYTR----NGRHLLLGGRKGHLAAFDWVTKKLHF---------EIN-VMETVRDVTFLHNEQFFAV-AQKKYVYVYD  197 (545)
T ss_pred             eeeeecC----CccEEEecCCccceeeeecccceeee---------eee-hhhhhhhhhhhcchHHHHh-hhhceEEEec
Confidence            4556655    34578889999999999988765432         111 1345788888877776664 5566788997


Q ss_pred             cCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEe-CCCCeEEEEecCCcEEEEECCCCceeeeeeeC
Q 036314          148 TNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFCG  226 (347)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~  226 (347)
                      -..                          +.+-.++.| ..|..+.| |..=.|++++..|.++.-|+.+|+.+..+..+
T Consensus       198 ~~G--------------------------tElHClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~  250 (545)
T KOG1272|consen  198 NNG--------------------------TELHCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTG  250 (545)
T ss_pred             CCC--------------------------cEEeehhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHcc
Confidence            542                          222233333 23555665 44445788899999999999999988777654


Q ss_pred             e-eeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCC
Q 036314          227 K-ALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTA  305 (347)
Q Consensus       227 ~-~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~  305 (347)
                      . .+..+.-.|- ..++-.|...|+|.+|.+...   .|+..+-.|.+.|.++++.++|. ++||++.|..++|||+|..
T Consensus       251 ~G~~~vm~qNP~-NaVih~GhsnGtVSlWSP~sk---ePLvKiLcH~g~V~siAv~~~G~-YMaTtG~Dr~~kIWDlR~~  325 (545)
T KOG1272|consen  251 AGRTDVMKQNPY-NAVIHLGHSNGTVSLWSPNSK---EPLVKILCHRGPVSSIAVDRGGR-YMATTGLDRKVKIWDLRNF  325 (545)
T ss_pred             CCccchhhcCCc-cceEEEcCCCceEEecCCCCc---chHHHHHhcCCCcceEEECCCCc-EEeecccccceeEeeeccc
Confidence            3 3333444343 347778999999999988753   34566678999999999999986 5999999999999999987


Q ss_pred             ccceeecCCCCeEEEEeecCCCEEEEccCCceEEEeecc
Q 036314          306 WPLSVIDSHKDKVLCADWWRGDSVISGGVDSKLCVSSGV  344 (347)
Q Consensus       306 ~~~~~~~~h~~~v~~~~~~~~~~l~s~s~D~~v~vw~~~  344 (347)
                      ..+.++.. .-....+++|.... .++|....|.||.+-
T Consensus       326 ~ql~t~~t-p~~a~~ls~Sqkgl-LA~~~G~~v~iw~d~  362 (545)
T KOG1272|consen  326 YQLHTYRT-PHPASNLSLSQKGL-LALSYGDHVQIWKDA  362 (545)
T ss_pred             cccceeec-CCCccccccccccc-eeeecCCeeeeehhh
Confidence            76666543 22455677775434 445777889999763

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.42  E-value=2.3e-11  Score=101.47  Aligned_cols=201  Identities=17%  Similarity=0.226  Sum_probs=149.7

Q ss_pred             cccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEe-CC
Q 036314          118 HKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW-PQ  196 (347)
Q Consensus       118 h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~  196 (347)
                      -..+|+|.+|++|+..+|.+-....|.||.......                      -+...++..|...|+++.| +.
T Consensus         9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~----------------------w~~~htls~Hd~~vtgvdWap~   66 (361)
T KOG1523|consen    9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADL----------------------WEPAHTLSEHDKIVTGVDWAPK   66 (361)
T ss_pred             ccCceeeeeecCCCceEEeccCCceEEEEEecCCCC----------------------ceeceehhhhCcceeEEeecCC
Confidence            357899999999999999999999999998654321                      1234577889999999999 56


Q ss_pred             CCeEEEEecCCcEEEEECCC-Cceeee---eeeCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCC-CCeEEecCC
Q 036314          197 QETIYSASWDHSVRTWDVEM-GKDLSD---IFCGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTS-APVFQFSSH  271 (347)
Q Consensus       197 ~~~l~s~s~dg~v~vwd~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~-~~~~~~~~h  271 (347)
                      .+.|.+++.|+.-.+|.... +....+   +.......|+.++|. ++.||+|+....|.+|=.+..+.. .....-..+
T Consensus        67 snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~-enkFAVgSgar~isVcy~E~ENdWWVsKhikkPi  145 (361)
T KOG1523|consen   67 SNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPK-ENKFAVGSGARLISVCYYEQENDWWVSKHIKKPI  145 (361)
T ss_pred             CCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCc-CceEEeccCccEEEEEEEecccceehhhhhCCcc
Confidence            77999999999999999844 332222   234567889999765 568899999999999876653321 011122357


Q ss_pred             CCCeeEEEeCCCCCeEEEEEeCCCcEEEEEc-----CC-------------CccceeecCCCCeEEEEeecC-CCEEEEc
Q 036314          272 NSWISACKWHNKSWFHLISASYDGKVMLWDL-----RT-------------AWPLSVIDSHKDKVLCADWWR-GDSVISG  332 (347)
Q Consensus       272 ~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~-----~~-------------~~~~~~~~~h~~~v~~~~~~~-~~~l~s~  332 (347)
                      .+.|.+++|+|++- +|++||.|+.+||+..     +.             |+.+..+....+-|..+.|++ |++||=.
T Consensus       146 rStv~sldWhpnnV-LlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv  224 (361)
T KOG1523|consen  146 RSTVTSLDWHPNNV-LLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWV  224 (361)
T ss_pred             ccceeeeeccCCcc-eecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEe
Confidence            78899999999984 6999999999999953     21             011222334457789999985 8899999


Q ss_pred             cCCceEEEee
Q 036314          333 GVDSKLCVSS  342 (347)
Q Consensus       333 s~D~~v~vw~  342 (347)
                      +.|++|.+-+
T Consensus       225 ~Hds~v~~~d  234 (361)
T KOG1523|consen  225 GHDSTVSFVD  234 (361)
T ss_pred             cCCCceEEee
Confidence            9999998765

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.42  E-value=1.3e-12  Score=113.73  Aligned_cols=215  Identities=18%  Similarity=0.257  Sum_probs=154.1

Q ss_pred             eeeccCC-CCCEEEEEecCCeEEEEcCCCeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccC
Q 036314           27 VSAVDGS-NPGFILTGCYDNLGRVWKAGGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNH  105 (347)
Q Consensus        27 v~~~~~~-~~~~l~sg~~d~~i~iw~~~~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~  105 (347)
                      |..+.|- +.+++|.+ ...-+.|||..|..++.+..|.. |..+.|.|.-    ..|+++++.|.++.-|+..++++..
T Consensus       173 v~Dv~~LHneq~~AVA-QK~y~yvYD~~GtElHClk~~~~-v~rLeFLPyH----fLL~~~~~~G~L~Y~DVS~GklVa~  246 (545)
T KOG1272|consen  173 VRDVTFLHNEQFFAVA-QKKYVYVYDNNGTELHCLKRHIR-VARLEFLPYH----FLLVAASEAGFLKYQDVSTGKLVAS  246 (545)
T ss_pred             hhhhhhhcchHHHHhh-hhceEEEecCCCcEEeehhhcCc-hhhhcccchh----heeeecccCCceEEEeechhhhhHH
Confidence            4555554 44555555 56778999988988888888854 8999998843    4689999999999999999876532


Q ss_pred             ccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCC
Q 036314          106 PKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGH  185 (347)
Q Consensus       106 ~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  185 (347)
                               +..-.+.+..+..+|-+..+-.|...|+|.+|.....                         +++-.+..|
T Consensus       247 ---------~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~sk-------------------------ePLvKiLcH  292 (545)
T KOG1272|consen  247 ---------IRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSK-------------------------EPLVKILCH  292 (545)
T ss_pred             ---------HHccCCccchhhcCCccceEEEcCCCceEEecCCCCc-------------------------chHHHHHhc
Confidence                     3334566777888898889999999999999975432                         234456679


Q ss_pred             ccceEEEEe-CCCCeEEEEecCCcEEEEECCCCceeeeeeeCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCC
Q 036314          186 TQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAP  264 (347)
Q Consensus       186 ~~~v~~~~~-~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~  264 (347)
                      .++|.++++ +.|.++++++.|+.++|||++.-..+.+.....+...++++.  ..++| .+....|.||.=.....+..
T Consensus       293 ~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~Sq--kglLA-~~~G~~v~iw~d~~~~s~~~  369 (545)
T KOG1272|consen  293 RGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQ--KGLLA-LSYGDHVQIWKDALKGSGHG  369 (545)
T ss_pred             CCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCCCcccccccc--cccee-eecCCeeeeehhhhcCCCCC
Confidence            999999998 578899999999999999999887777766656667777743  23444 45667899994221111011


Q ss_pred             eEEecCC--CCCeeEEEeCCCC
Q 036314          265 VFQFSSH--NSWISACKWHNKS  284 (347)
Q Consensus       265 ~~~~~~h--~~~v~~v~~s~~~  284 (347)
                      ...+..|  ...|..+.|.|-.
T Consensus       370 ~~pYm~H~~~~~V~~l~FcP~E  391 (545)
T KOG1272|consen  370 ETPYMNHRCGGPVEDLRFCPYE  391 (545)
T ss_pred             CcchhhhccCcccccceeccHH
Confidence            1111122  2367888888754

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.42  E-value=4.3e-11  Score=100.78  Aligned_cols=276  Identities=20%  Similarity=0.289  Sum_probs=166.6

Q ss_pred             CcCCceeeccCC-CCCEEEEEecCCeEEEEcCC----Ce--EEEEeeccCC------------ceEEEEEeecCCCceEE
Q 036314           22 LHDDWVSAVDGS-NPGFILTGCYDNLGRVWKAG----GV--CTHILEGHCG------------AVSSVNIIKSDGLKYVT   82 (347)
Q Consensus        22 ~h~~~v~~~~~~-~~~~l~sg~~d~~i~iw~~~----~~--~~~~l~~h~~------------~V~~v~~~~~~~~~~~~   82 (347)
                      ...+-|.++.|. .|.+||||..+|.|-++...    +.  ....++.|+.            +|+.+.|.++++.  ..
T Consensus        23 teadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~--a~  100 (433)
T KOG1354|consen   23 TEADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNL--AE  100 (433)
T ss_pred             chhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCc--cE
Confidence            345788999987 67899999999999999642    21  2344666653            5788899886653  34


Q ss_pred             EEEccCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeee
Q 036314           83 VATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKK  162 (347)
Q Consensus        83 l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~  162 (347)
                      ++...+|.+|++|.+........ . ..  ..-.+....+.++..      .+-+..|-.+                   
T Consensus       101 FLlstNdktiKlWKi~er~~k~~-~-~~--~~~~~~~~~~~~lr~------p~~~~~~~~v-------------------  151 (433)
T KOG1354|consen  101 FLLSTNDKTIKLWKIRERGSKKE-G-YN--LPEEGPPGTITSLRL------PVEGRHDLEV-------------------  151 (433)
T ss_pred             EEEecCCcceeeeeeeccccccc-c-cc--ccccCCCCccceeec------eeecccccee-------------------
Confidence            55678999999999864321100 0 00  000001111222111      0001111000                   


Q ss_pred             ccCCCccccccccccccccc-cCCccceEEEEeC-CCCeEEEEecCCcEEEEECCCCceeeee---eeC------eeeEE
Q 036314          163 RKGNNQVEEPQLEGEAISTL-VGHTQCVSSVVWP-QQETIYSASWDHSVRTWDVEMGKDLSDI---FCG------KALNC  231 (347)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~-~~~~l~s~s~dg~v~vwd~~~~~~~~~~---~~~------~~~~~  231 (347)
                                  +..+.+.+ -.|+--|+++.+. +++.++| +.|=.|.+|+++-...-..+   ...      ..++.
T Consensus       152 ------------ea~prRv~aNaHtyhiNSIS~NsD~Et~lS-ADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITs  218 (433)
T KOG1354|consen  152 ------------EASPRRVYANAHTYHINSISVNSDKETFLS-ADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITS  218 (433)
T ss_pred             ------------eeeeeeeccccceeEeeeeeecCccceEee-ccceeeeeccccccCCceeEEEccccCHHHHHHHHhh
Confidence                        11112222 3477778999884 5566665 46778999998643322222   111      23456


Q ss_pred             EEeeCCCCcEEEEecCCCcEEEEeCCCCC-------------CCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEE
Q 036314          232 IDIGGEGSALIAAGGSDPILRIWDPRKPG-------------TSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVM  298 (347)
Q Consensus       232 ~~~~~~~~~~la~~~~d~~i~iwd~~~~~-------------~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~  298 (347)
                      ..|+|...++++-.+..|+|++-|+|...             .+....-++.-...|.++.|++.|++ +++-.. -+|+
T Consensus       219 aEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGry-ilsRDy-ltvk  296 (433)
T KOG1354|consen  219 AEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRY-ILSRDY-LTVK  296 (433)
T ss_pred             hccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcE-EEEecc-ceeE
Confidence            67888888888888889999999998421             11111112233345888999999865 665543 5899


Q ss_pred             EEEcC-CCccceeecCCC------------CeE---EEEeec-CCCEEEEccCCceEEEeec
Q 036314          299 LWDLR-TAWPLSVIDSHK------------DKV---LCADWW-RGDSVISGGVDSKLCVSSG  343 (347)
Q Consensus       299 lwd~~-~~~~~~~~~~h~------------~~v---~~~~~~-~~~~l~s~s~D~~v~vw~~  343 (347)
                      |||+. ..+++.+++-|.            +.|   ..+.|+ ++.+++|||.....+++.+
T Consensus       297 ~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~  358 (433)
T KOG1354|consen  297 LWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNL  358 (433)
T ss_pred             EEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecC
Confidence            99994 456666655443            334   356776 5668999999999999873

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.41  E-value=3.5e-11  Score=101.27  Aligned_cols=227  Identities=19%  Similarity=0.254  Sum_probs=142.0

Q ss_pred             CCCcCCceeeccC-CCCCEEEEEecCCeEEEEcC-C-CeE-EEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEE
Q 036314           20 PSLHDDWVSAVDG-SNPGFILTGCYDNLGRVWKA-G-GVC-THILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLW   95 (347)
Q Consensus        20 ~~~h~~~v~~~~~-~~~~~l~sg~~d~~i~iw~~-~-~~~-~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~w   95 (347)
                      ..||-+.|++.-. +...-+.+.+.|.++|+|-- . ++. .-+...-..+++++.+.+    ....|+.|-..|++.-+
T Consensus        20 ~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~----e~~~L~vg~~ngtvtef   95 (404)
T KOG1409|consen   20 IEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVS----ESRRLYVGQDNGTVTEF   95 (404)
T ss_pred             hcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeec----cceEEEEEEecceEEEE
Confidence            4588888887764 33446899999999999952 2 221 112222345677787776    34578889999999888


Q ss_pred             eccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCC-CCCCCccceeeeccC-C-------
Q 036314           96 KFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTND-SDAAGNQVSIKKRKG-N-------  166 (347)
Q Consensus        96 d~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~-~~~~~~~~~~~~~~~-~-------  166 (347)
                      .+..     ..++....+....|..+|..+.|+-.-.++++.+.|..+. |-... +.-.+.+........ .       
T Consensus        96 s~se-----dfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~-~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~f  169 (404)
T KOG1409|consen   96 ALSE-----DFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFA-WHCTESGNRLGGYNFETPASALQFDALYAF  169 (404)
T ss_pred             Ehhh-----hhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceE-EEeeccCCcccceEeeccCCCCceeeEEEE
Confidence            7642     2333344455668999999999998899999999998775 54332 211111111000000 0       


Q ss_pred             -----Ccc---ccccccccccccccCCccceEEEEeC-CCCeEEEEecCCcEEEEECCCCceee-eee-eCeeeEEEEee
Q 036314          167 -----NQV---EEPQLEGEAISTLVGHTQCVSSVVWP-QQETIYSASWDHSVRTWDVEMGKDLS-DIF-CGKALNCIDIG  235 (347)
Q Consensus       167 -----~~~---~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~l~s~s~dg~v~vwd~~~~~~~~-~~~-~~~~~~~~~~~  235 (347)
                           ...   ...+-.-..+.++.+|.+++.++.|. .+..|+|+..|..+.+||+-...-+. .++ +.+.+..+...
T Consensus       170 vGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~  249 (404)
T KOG1409|consen  170 VGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYA  249 (404)
T ss_pred             ecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhh
Confidence                 000   00001123456788999999999994 55678999999999999985433222 222 23333333322


Q ss_pred             CCCCcEEEEecCCCcEEEEeCC
Q 036314          236 GEGSALIAAGGSDPILRIWDPR  257 (347)
Q Consensus       236 ~~~~~~la~~~~d~~i~iwd~~  257 (347)
                      +- ...+.+++.||.|.+||+.
T Consensus       250 ~~-t~~l~S~~edg~i~~w~mn  270 (404)
T KOG1409|consen  250 QH-TRQLISCGEDGGIVVWNMN  270 (404)
T ss_pred             hh-heeeeeccCCCeEEEEecc
Confidence            22 2356778899999999975

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.38  E-value=5.5e-10  Score=95.01  Aligned_cols=221  Identities=13%  Similarity=0.139  Sum_probs=139.2

Q ss_pred             ceEEEEEccCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCc--EEEEecCCCCCCCc
Q 036314           79 KYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCT--ISLWRTNDSDAAGN  156 (347)
Q Consensus        79 ~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~--I~iwd~~~~~~~~~  156 (347)
                      +...|..|+.|| -++|..+..+.        +.. ...-.-.|..+-|+.+  ++|-.+.+..  +++.+.....    
T Consensus        16 d~~~lsvGs~~G-yk~~~~~~~~k--------~~~-~~~~~~~IvEmLFSSS--LvaiV~~~qpr~Lkv~~~Kk~~----   79 (391)
T KOG2110|consen   16 DSTLLSVGSKDG-YKIFSCSPFEK--------CFS-KDTEGVSIVEMLFSSS--LVAIVSIKQPRKLKVVHFKKKT----   79 (391)
T ss_pred             ceeEEEccCCCc-eeEEecCchHH--------hhc-ccCCCeEEEEeecccc--eeEEEecCCCceEEEEEcccCc----
Confidence            445688888888 57887654321        110 0111223444556643  4443443433  6666654321    


Q ss_pred             cceeeeccCCCccccccccccccccccCCccceEEEEeCCCCeEEEEecCCcEEEEECCCCceeeeeeeC--eeeEEEEe
Q 036314          157 QVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWPQQETIYSASWDHSVRTWDVEMGKDLSDIFCG--KALNCIDI  234 (347)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~--~~~~~~~~  234 (347)
                                           .+..+. ....|.++.+.. ++|+.+=.+ .|.|||+++-+.++++...  ++....++
T Consensus        80 ---------------------~ICe~~-fpt~IL~VrmNr-~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~Al  135 (391)
T KOG2110|consen   80 ---------------------TICEIF-FPTSILAVRMNR-KRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCAL  135 (391)
T ss_pred             ---------------------eEEEEe-cCCceEEEEEcc-ceEEEEEcc-cEEEEecccceeehhhhccCCCccceEee
Confidence                                 111111 123455555544 444444444 4999999998888777543  33223344


Q ss_pred             eCCCC-cEEEE-e-cCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCc-EEEEEcCCCcccee
Q 036314          235 GGEGS-ALIAA-G-GSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGK-VMLWDLRTAWPLSV  310 (347)
Q Consensus       235 ~~~~~-~~la~-~-~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~-i~lwd~~~~~~~~~  310 (347)
                      +++.. .++|- + ...|.|.+||...   ..+...+..|.+.+.+++|+++|. +|||||+.|+ |||+.+..|+.+..
T Consensus       136 S~n~~n~ylAyp~s~t~GdV~l~d~~n---l~~v~~I~aH~~~lAalafs~~G~-llATASeKGTVIRVf~v~~G~kl~e  211 (391)
T KOG2110|consen  136 SPNNANCYLAYPGSTTSGDVVLFDTIN---LQPVNTINAHKGPLAALAFSPDGT-LLATASEKGTVIRVFSVPEGQKLYE  211 (391)
T ss_pred             ccCCCCceEEecCCCCCceEEEEEccc---ceeeeEEEecCCceeEEEECCCCC-EEEEeccCceEEEEEEcCCccEeee
Confidence            33322 23332 2 2358999999864   445778889999999999999995 7999998885 89999999998888


Q ss_pred             ecCCC--CeEEEEeecC-CCEEEEccCCceEEEeec
Q 036314          311 IDSHK--DKVLCADWWR-GDSVISGGVDSKLCVSSG  343 (347)
Q Consensus       311 ~~~h~--~~v~~~~~~~-~~~l~s~s~D~~v~vw~~  343 (347)
                      |..-.  ..|.+++|++ +++|++.|.-+||.|+..
T Consensus       212 FRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL  247 (391)
T KOG2110|consen  212 FRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKL  247 (391)
T ss_pred             eeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEe
Confidence            86433  3567999985 667888889999999754

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.36  E-value=3.9e-10  Score=94.15  Aligned_cols=153  Identities=15%  Similarity=0.142  Sum_probs=107.4

Q ss_pred             ccceEEEEeCCCCeEEEEecCCcEEEEECC-CCceeeeeee---CeeeEEEEeeCCCCcEEE-EecCCCcEEEEeCCCCC
Q 036314          186 TQCVSSVVWPQQETIYSASWDHSVRTWDVE-MGKDLSDIFC---GKALNCIDIGGEGSALIA-AGGSDPILRIWDPRKPG  260 (347)
Q Consensus       186 ~~~v~~~~~~~~~~l~s~s~dg~v~vwd~~-~~~~~~~~~~---~~~~~~~~~~~~~~~~la-~~~~d~~i~iwd~~~~~  260 (347)
                      ..+|.++.+..+ .|+. -..+.|.||... ..+.++.+..   ++...++.-... ..+|| -|-.-|.|.|-|+....
T Consensus        94 ~~~I~~V~l~r~-riVv-vl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~-k~~LafPg~k~GqvQi~dL~~~~  170 (346)
T KOG2111|consen   94 NSEIKAVKLRRD-RIVV-VLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSN-KSLLAFPGFKTGQVQIVDLASTK  170 (346)
T ss_pred             ccceeeEEEcCC-eEEE-EecCeEEEEEcCCChhheeeeecccCCCceEeecCCCC-ceEEEcCCCccceEEEEEhhhcC
Confidence            346777776443 3333 357789999987 3455554432   223333332222 22333 34556899999997643


Q ss_pred             CCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCc-EEEEEcCCCccceeecC--CCCeEEEEeecC-CCEEEEccCCc
Q 036314          261 TSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGK-VMLWDLRTAWPLSVIDS--HKDKVLCADWWR-GDSVISGGVDS  336 (347)
Q Consensus       261 ~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~-i~lwd~~~~~~~~~~~~--h~~~v~~~~~~~-~~~l~s~s~D~  336 (347)
                      . .+...+..|.+.|.+++.+-+| .++||+|..|+ |||||..+|+.++.+..  -...|+|++||| ..+||.+|.-|
T Consensus       171 ~-~~p~~I~AH~s~Iacv~Ln~~G-t~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKg  248 (346)
T KOG2111|consen  171 P-NAPSIINAHDSDIACVALNLQG-TLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKG  248 (346)
T ss_pred             c-CCceEEEcccCceeEEEEcCCc-cEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCC
Confidence            2 1345778999999999999998 47999998886 89999999999888753  246799999986 66899999999


Q ss_pred             eEEEeec
Q 036314          337 KLCVSSG  343 (347)
Q Consensus       337 ~v~vw~~  343 (347)
                      ||.|.+.
T Consensus       249 TlHiF~l  255 (346)
T KOG2111|consen  249 TLHIFSL  255 (346)
T ss_pred             eEEEEEe
Confidence            9999864

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.36  E-value=2.5e-10  Score=97.66  Aligned_cols=249  Identities=14%  Similarity=0.131  Sum_probs=165.5

Q ss_pred             CCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcE
Q 036314           64 CGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTI  143 (347)
Q Consensus        64 ~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I  143 (347)
                      ...|.++.|.-++  ....+...+.|-.+..+.+....+....   -...+......+|..++..  ...|++|-.+|.+
T Consensus        55 ~~ris~l~~~~d~--~tevl~~r~~~~~~~~~~~~E~~~~s~~---~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l  127 (412)
T KOG3881|consen   55 LDRISSLLFGVDG--ETEVLNARSADDDLPKFVIEEFEISSSL---DDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNL  127 (412)
T ss_pred             hhhhhhheeecCC--ceeEeeccccCcccccccccCCcccccc---ccccccccccccccchhhc--CCEEEEEecCCcE
Confidence            3456677776432  2234555557777887777655443221   0112333456677666543  3467788999999


Q ss_pred             EEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEE-eCCCC-eEEEEecC--CcEEEEECCCCce
Q 036314          144 SLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVV-WPQQE-TIYSASWD--HSVRTWDVEMGKD  219 (347)
Q Consensus       144 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~-~~~~~-~l~s~s~d--g~v~vwd~~~~~~  219 (347)
                      .+|....+....+..                     ..+..+ ..+..+. .+... .+++|+..  ..+++||++..+.
T Consensus       128 ~~~~~k~~d~hss~l---------------------~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~q  185 (412)
T KOG3881|consen  128 QVRHDKSGDLHSSKL---------------------IKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQ  185 (412)
T ss_pred             EEEeccCCccccccc---------------------eeeecC-CceeeeccCCCCCceEecCchhcccceeeeeccccee
Confidence            999887654322111                     111111 1122221 12233 46778888  7899999998754


Q ss_pred             eeeeee--------Ceee--EEEEeeCC-CCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEE
Q 036314          220 LSDIFC--------GKAL--NCIDIGGE-GSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHL  288 (347)
Q Consensus       220 ~~~~~~--------~~~~--~~~~~~~~-~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l  288 (347)
                      +-.-..        .-++  +.+.|-++ ..+.||+++.-+.+++||++.+.  +|+..+.--...++++...|++. ++
T Consensus       186 iw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qR--RPV~~fd~~E~~is~~~l~p~gn-~I  262 (412)
T KOG3881|consen  186 IWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQR--RPVAQFDFLENPISSTGLTPSGN-FI  262 (412)
T ss_pred             eeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccC--cceeEeccccCcceeeeecCCCc-EE
Confidence            422111        0133  23444332 25678999999999999998644  45667766778899999999985 69


Q ss_pred             EEEeCCCcEEEEEcCCCcccee-ecCCCCeEEEEeecCC-CEEEEccCCceEEEeecc
Q 036314          289 ISASYDGKVMLWDLRTAWPLSV-IDSHKDKVLCADWWRG-DSVISGGVDSKLCVSSGV  344 (347)
Q Consensus       289 ~s~s~D~~i~lwd~~~~~~~~~-~~~h~~~v~~~~~~~~-~~l~s~s~D~~v~vw~~~  344 (347)
                      .+|..-+.+..+|+++++.+.. +.+-++.++++-.+|+ ..+|++|.|+-|||.+.-
T Consensus       263 y~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~k  320 (412)
T KOG3881|consen  263 YTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIK  320 (412)
T ss_pred             EEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecc
Confidence            9999999999999999887766 7888999999999875 689999999999999864

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.35  E-value=1e-09  Score=93.24  Aligned_cols=235  Identities=14%  Similarity=0.231  Sum_probs=141.5

Q ss_pred             EEEEEecCCeEEEEcCCCeEEEEee-ccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCc---ccccee
Q 036314           37 FILTGCYDNLGRVWKAGGVCTHILE-GHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHP---KKIRSF  112 (347)
Q Consensus        37 ~l~sg~~d~~i~iw~~~~~~~~~l~-~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~---~~~~~~  112 (347)
                      -+|.+..|-+||+|+-...+...++ ..+..|.+++|-|-...   .|+.|...| |-+|..+..-....+   ....+.
T Consensus       112 ~fava~nddvVriy~ksst~pt~Lks~sQrnvtclawRPlsas---elavgCr~g-IciW~~s~tln~~r~~~~~s~~~~  187 (445)
T KOG2139|consen  112 AFAVATNDDVVRIYDKSSTCPTKLKSVSQRNVTCLAWRPLSAS---ELAVGCRAG-ICIWSDSRTLNANRNIRMMSTHHL  187 (445)
T ss_pred             hhhhhccCcEEEEeccCCCCCceecchhhcceeEEEeccCCcc---eeeeeecce-eEEEEcCcccccccccccccccch
Confidence            4778889999999986555554555 34567999999886543   466666654 889986532111110   011111


Q ss_pred             e--eeeccccceEEEEEeCCCCEEEEeeC-CCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccce
Q 036314          113 K--ILRGHKASVHSIAAETSGNMVCSGSW-DCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCV  189 (347)
Q Consensus       113 ~--~~~~h~~~V~~v~~s~~~~~l~sgs~-Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v  189 (347)
                      +  .-.+| .+|+++.+++||..+++++. |..|.|||..++...                       .+.  .---+.+
T Consensus       188 qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~-----------------------pL~--~~glgg~  241 (445)
T KOG2139|consen  188 QVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKI-----------------------PLI--PKGLGGF  241 (445)
T ss_pred             hheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcc-----------------------ccc--ccCCCce
Confidence            1  23456 78999999999999999876 567999998765321                       111  0111235


Q ss_pred             EEEEe-CCCCeEEEEecCCcEEEEECCCCceeeeee-eCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCC-----
Q 036314          190 SSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIF-CGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTS-----  262 (347)
Q Consensus       190 ~~~~~-~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~-----  262 (347)
                      .-+.| |++.+|+.+..|+..++|+......-.... ....+....++|.+..++.+.+....  +|.+.-.++.     
T Consensus       242 slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~--lysl~f~~~~~~~~~  319 (445)
T KOG2139|consen  242 SLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPR--LYSLTFDGEDSVFLR  319 (445)
T ss_pred             eeEEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCce--EEEEeecCCCccccC
Confidence            55677 688999999999999999654322111222 23356667777777766666654443  3332211100     


Q ss_pred             -------CCeEEe-----cCC----CCCeeEEEeCCCCCeEEEEEeCC--------CcEEEEEcCC
Q 036314          263 -------APVFQF-----SSH----NSWISACKWHNKSWFHLISASYD--------GKVMLWDLRT  304 (347)
Q Consensus       263 -------~~~~~~-----~~h----~~~v~~v~~s~~~~~~l~s~s~D--------~~i~lwd~~~  304 (347)
                             ..+..+     ...    .+...+++|.|.|.+ ||+.=..        ..|.+||.+.
T Consensus       320 ~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGey-Lav~fKg~~~v~~~k~~i~~fdtr~  384 (445)
T KOG2139|consen  320 PQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEY-LAVIFKGQSFVLLCKLHISRFDTRK  384 (445)
T ss_pred             cccceeeeeeccchhhhhhcCcccccCccceeeECCCCCE-EEEEEcCCchhhhhhhhhhhhcccc
Confidence                   000011     011    245788999999976 5554332        2366787765

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.35  E-value=2e-10  Score=96.27  Aligned_cols=259  Identities=17%  Similarity=0.234  Sum_probs=148.8

Q ss_pred             EEEEEecCCeEEEEcCC-CeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeee
Q 036314           37 FILTGCYDNLGRVWKAG-GVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKIL  115 (347)
Q Consensus        37 ~l~sg~~d~~i~iw~~~-~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~  115 (347)
                      +|.....|+.|++|++. .........-.+.+.++.|+|++.   +.|.+...|-.|.+|.+.+.+..          .+
T Consensus        63 ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgr---hiL~tseF~lriTVWSL~t~~~~----------~~  129 (447)
T KOG4497|consen   63 ILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGR---HILLTSEFDLRITVWSLNTQKGY----------LL  129 (447)
T ss_pred             eeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcc---eEeeeecceeEEEEEEeccceeE----------Ee
Confidence            56667788999999974 334444555556689999999654   47888889999999999765421          22


Q ss_pred             eccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEe-
Q 036314          116 RGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW-  194 (347)
Q Consensus       116 ~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-  194 (347)
                      +--+..+..++|+|||++.+-.++-      |..+-      ..+..      ..    .-..++.+.-.+....++.| 
T Consensus       130 ~~pK~~~kg~~f~~dg~f~ai~sRr------DCkdy------v~i~~------c~----~W~ll~~f~~dT~DltgieWs  187 (447)
T KOG4497|consen  130 PHPKTNVKGYAFHPDGQFCAILSRR------DCKDY------VQISS------CK----AWILLKEFKLDTIDLTGIEWS  187 (447)
T ss_pred             cccccCceeEEECCCCceeeeeecc------cHHHH------HHHHh------hH----HHHHHHhcCCCcccccCceEC
Confidence            2234556788999999988765532      21110      00000      00    00112222333334455566 


Q ss_pred             CCCCeEEEEecCCcEEEEECCCCceeeeeeeCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCC---------------CC
Q 036314          195 PQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEGSALIAAGGSDPILRIWDPR---------------KP  259 (347)
Q Consensus       195 ~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~---------------~~  259 (347)
                      |+|..|         .+||.--.-.+.....+-.+..+.++|- +++++.|+.|+.+|+.+--               .+
T Consensus       188 Pdg~~l---------aVwd~~Leykv~aYe~~lG~k~v~wsP~-~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp  257 (447)
T KOG4497|consen  188 PDGNWL---------AVWDNVLEYKVYAYERGLGLKFVEWSPC-NQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDP  257 (447)
T ss_pred             CCCcEE---------EEecchhhheeeeeeeccceeEEEeccc-cceEEeeccchhhhhhceeeeeehhhhccchhccCc
Confidence            333333         3555432222222222334555666443 3567777777777664310               00


Q ss_pred             ------------------------------------------CCC------CCeEEecCCCCCeeEEEeCCCCCeEEEEE
Q 036314          260 ------------------------------------------GTS------APVFQFSSHNSWISACKWHNKSWFHLISA  291 (347)
Q Consensus       260 ------------------------------------------~~~------~~~~~~~~h~~~v~~v~~s~~~~~~l~s~  291 (347)
                                                                ..+      +|...+......+..++||+|. ++++|-
T Consensus       258 ~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds-~y~aTr  336 (447)
T KOG4497|consen  258 TLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDS-TYAATR  336 (447)
T ss_pred             hhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCc-eEEeee
Confidence                                                      000      0001111223357789999997 446665


Q ss_pred             eC--CCcEEEEEcCCCccceeecCCCCeEEEEeecCCC-EEEEccCCceEEEee
Q 036314          292 SY--DGKVMLWDLRTAWPLSVIDSHKDKVLCADWWRGD-SVISGGVDSKLCVSS  342 (347)
Q Consensus       292 s~--D~~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~s~D~~v~vw~  342 (347)
                      ..  -..+.+||++.-+.-..+. ...+|+...|.|++ +|+.+.....+.+|+
T Consensus       337 nd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP~~prL~vctg~srLY~W~  389 (447)
T KOG4497|consen  337 NDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDPGRPRLVVCTGKSRLYFWA  389 (447)
T ss_pred             cCCCCceEEEEechhhhhhhhhh-hccceeEEEeCCCCceEEEEcCCceEEEEc
Confidence            43  2579999998755444443 46689999999876 577777777799996

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.34  E-value=5.1e-10  Score=100.26  Aligned_cols=272  Identities=14%  Similarity=0.169  Sum_probs=166.2

Q ss_pred             CcCCceeeccCC-CCC-EEEEEecCCeEEEEcCCCeEEEEeeccCC-ceEEEEEeecCCCceEEEEEccCCCcEEEEecc
Q 036314           22 LHDDWVSAVDGS-NPG-FILTGCYDNLGRVWKAGGVCTHILEGHCG-AVSSVNIIKSDGLKYVTVATASKDQTLRLWKFD   98 (347)
Q Consensus        22 ~h~~~v~~~~~~-~~~-~l~sg~~d~~i~iw~~~~~~~~~l~~h~~-~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~   98 (347)
                      +|.+.-+.+..+ +|+ ++|||-+-..|++||+....++ |..|.+ .|..+-+..++   ...++-=-.|.+|.+...-
T Consensus        49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLK-FERhlDae~V~feiLsDD---~SK~v~L~~DR~IefHak~  124 (703)
T KOG2321|consen   49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLK-FERHLDAEVVDFEILSDD---YSKSVFLQNDRTIEFHAKY  124 (703)
T ss_pred             CCccccceeEecCCCcEEEEecccCCceEEEEcccceee-eeecccccceeEEEeccc---hhhheEeecCceeeehhhc
Confidence            567777778877 455 5778889999999998754433 555543 34333332222   1122333456666544321


Q ss_pred             ccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccc
Q 036314           99 AEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEA  178 (347)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (347)
                      . .          ...++- ...-..++++.-..-|+.++....|.-++++.+.                         .
T Consensus       125 G-~----------hy~~RI-P~~GRDm~y~~~scDly~~gsg~evYRlNLEqGr-------------------------f  167 (703)
T KOG2321|consen  125 G-R----------HYRTRI-PKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGR-------------------------F  167 (703)
T ss_pred             C-e----------eeeeec-CcCCccccccCCCccEEEeecCcceEEEEccccc-------------------------c
Confidence            1 0          000000 1122455655444334444445567667776532                         2


Q ss_pred             cccccCCccceEEEEe-CCCCeEEEEecCCcEEEEECCCCceeeeeeeCe------------eeEEEEeeCCCCcEEEEe
Q 036314          179 ISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFCGK------------ALNCIDIGGEGSALIAAG  245 (347)
Q Consensus       179 ~~~~~~h~~~v~~~~~-~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~la~~  245 (347)
                      +..+.....+++++.. +.++.|++|+.+|.|..||.++...+..+....            .++.+.|. +++..+++|
T Consensus       168 L~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~-d~gL~~aVG  246 (703)
T KOG2321|consen  168 LNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFR-DDGLHVAVG  246 (703)
T ss_pred             ccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEec-CCceeEEee
Confidence            3334444466777766 456788899999999999998876665554321            37788884 447789999


Q ss_pred             cCCCcEEEEeCCCCCCCCCeEEecCCCC--CeeEEEeCCCCCe-EEEEEeCCCcEEEEEcCCCccceeecCCCCeEEEEe
Q 036314          246 GSDPILRIWDPRKPGTSAPVFQFSSHNS--WISACKWHNKSWF-HLISASYDGKVMLWDLRTAWPLSVIDSHKDKVLCAD  322 (347)
Q Consensus       246 ~~d~~i~iwd~~~~~~~~~~~~~~~h~~--~v~~v~~s~~~~~-~l~s~s~D~~i~lwd~~~~~~~~~~~~h~~~v~~~~  322 (347)
                      +.+|.+.|||+|...   |+ ....|..  .|..+.|.+.+.. .|+| .....++|||-.+|++...++... .+..++
T Consensus       247 ts~G~v~iyDLRa~~---pl-~~kdh~~e~pi~~l~~~~~~~q~~v~S-~Dk~~~kiWd~~~Gk~~asiEpt~-~lND~C  320 (703)
T KOG2321|consen  247 TSTGSVLIYDLRASK---PL-LVKDHGYELPIKKLDWQDTDQQNKVVS-MDKRILKIWDECTGKPMASIEPTS-DLNDFC  320 (703)
T ss_pred             ccCCcEEEEEcccCC---ce-eecccCCccceeeecccccCCCceEEe-cchHHhhhcccccCCceeeccccC-CcCcee
Confidence            999999999998632   22 2234554  5788888766322 2443 334689999999999988887644 477666


Q ss_pred             ecC-CCEEEEccCCceEEEe
Q 036314          323 WWR-GDSVISGGVDSKLCVS  341 (347)
Q Consensus       323 ~~~-~~~l~s~s~D~~v~vw  341 (347)
                      +-| +..+.+|-.+..+.-+
T Consensus       321 ~~p~sGm~f~Ane~~~m~~y  340 (703)
T KOG2321|consen  321 FVPGSGMFFTANESSKMHTY  340 (703)
T ss_pred             eecCCceEEEecCCCcceeE
Confidence            655 4467777766665544

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.34  E-value=9.8e-11  Score=98.64  Aligned_cols=251  Identities=18%  Similarity=0.247  Sum_probs=173.9

Q ss_pred             EEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEec-cccccccCccccceeeeeeccccceEEEEEeCCCCEE
Q 036314           56 CTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKF-DAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMV  134 (347)
Q Consensus        56 ~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~-~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l  134 (347)
                      .++.++||.+.|+.....|...    .+.+.+.|.++|+|-- +.++.      +..+...  -..+++++.+.++...|
T Consensus        16 ll~~~eG~~d~vn~~~l~~~e~----gv~~~s~drtvrv~lkrds~q~------wpsI~~~--mP~~~~~~~y~~e~~~L   83 (404)
T KOG1409|consen   16 LLSKIEGSQDDVNAAILIPKEE----GVISVSEDRTVRVWLKRDSGQY------WPSIYHY--MPSPCSAMEYVSESRRL   83 (404)
T ss_pred             hhhhhcCchhhhhhheeccCCC----CeEEccccceeeeEEecccccc------Cchhhhh--CCCCceEeeeeccceEE
Confidence            4566889999998877666443    3889999999999963 22221      1222211  14567889999999999


Q ss_pred             EEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEeC-CCCeEEEEecCCcEEEEE
Q 036314          135 CSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWP-QQETIYSASWDHSVRTWD  213 (347)
Q Consensus       135 ~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~l~s~s~dg~v~vwd  213 (347)
                      +.|=..|++.-+.+...-.                     .....+.+..|...+..+.|. ..+.+++.+.|..+.---
T Consensus        84 ~vg~~ngtvtefs~sedfn---------------------km~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc  142 (404)
T KOG1409|consen   84 YVGQDNGTVTEFALSEDFN---------------------KMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHC  142 (404)
T ss_pred             EEEEecceEEEEEhhhhhh---------------------hcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEe
Confidence            9999999998887653210                     112345667788889998885 557899999998886444


Q ss_pred             CCCCceeeeeeeCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeC
Q 036314          214 VEMGKDLSDIFCGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASY  293 (347)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~  293 (347)
                      .+.+..+..........++.+.-.   ....|...|.|..-.+.. ....++.++.+|.+.+.++.|.|... +|.+|..
T Consensus       143 ~e~~~~lg~Y~~~~~~t~~~~d~~---~~fvGd~~gqvt~lr~~~-~~~~~i~~~~~h~~~~~~l~Wd~~~~-~LfSg~~  217 (404)
T KOG1409|consen  143 TESGNRLGGYNFETPASALQFDAL---YAFVGDHSGQITMLKLEQ-NGCQLITTFNGHTGEVTCLKWDPGQR-LLFSGAS  217 (404)
T ss_pred             eccCCcccceEeeccCCCCceeeE---EEEecccccceEEEEEee-cCCceEEEEcCcccceEEEEEcCCCc-EEEeccc
Confidence            455544432221111111111111   333455556666655543 23456889999999999999998764 6999999


Q ss_pred             CCcEEEEEcCCCcc-ceeecCCCCeEEEEeecC-CCEEEEccCCceEEEeecc
Q 036314          294 DGKVMLWDLRTAWP-LSVIDSHKDKVLCADWWR-GDSVISGGVDSKLCVSSGV  344 (347)
Q Consensus       294 D~~i~lwd~~~~~~-~~~~~~h~~~v~~~~~~~-~~~l~s~s~D~~v~vw~~~  344 (347)
                      |..+.+||+-.+.- ...+.+|.+.|..+.+.+ -.++.|++.||.|-+|+-+
T Consensus       218 d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn  270 (404)
T KOG1409|consen  218 DHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMN  270 (404)
T ss_pred             cCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEecc
Confidence            99999999965433 346789999999888854 6679999999999999865

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.34  E-value=1.8e-10  Score=109.52  Aligned_cols=144  Identities=19%  Similarity=0.185  Sum_probs=115.6

Q ss_pred             CCCeEEEEecCCcEEEEECCCCceeeeeeeCeee--E--EEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCC
Q 036314          196 QQETIYSASWDHSVRTWDVEMGKDLSDIFCGKAL--N--CIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSH  271 (347)
Q Consensus       196 ~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h  271 (347)
                      ....++.+..++.+.+||...+....++++....  .  ++.......-.+++|+--+.|.+|++...  ..+. .+.+|
T Consensus        98 e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~d--n~p~-~l~GH  174 (967)
T KOG0974|consen   98 ENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHED--NKPI-RLKGH  174 (967)
T ss_pred             hcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEecccc--CCcc-eeccc
Confidence            4567888888999999999888777766655422  1  22222345567889999999999998732  2333 67899


Q ss_pred             CCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccce-eecCCCCeEEEEeecCCCEEEEccCCceEEEeecc
Q 036314          272 NSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLS-VIDSHKDKVLCADWWRGDSVISGGVDSKLCVSSGV  344 (347)
Q Consensus       272 ~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~-~~~~h~~~v~~~~~~~~~~l~s~s~D~~v~vw~~~  344 (347)
                      .+.+-++.|+.+|. ++++.|+|.++|+|++++.+... +.-+|++.|+.+.|.|. +++|++.|.+.++|+-+
T Consensus       175 eG~iF~i~~s~dg~-~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n-~i~t~gedctcrvW~~~  246 (967)
T KOG0974|consen  175 EGSIFSIVTSLDGR-YIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN-RIITVGEDCTCRVWGVN  246 (967)
T ss_pred             CCceEEEEEccCCc-EEEEEecCcceeeeecccccccCcccccccceeEEEEeccc-eeEEeccceEEEEEecc
Confidence            99999999999986 59999999999999999987766 67799999999999877 99999999999999543

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.33  E-value=1.3e-10  Score=110.52  Aligned_cols=197  Identities=23%  Similarity=0.313  Sum_probs=140.2

Q ss_pred             CCceeeccCC-CCCEEEEEecCCeEEEEcCCCeEEEEeeccCCceE--EEEEeecCCCceEEEEEccCCCcEEEEecccc
Q 036314           24 DDWVSAVDGS-NPGFILTGCYDNLGRVWKAGGVCTHILEGHCGAVS--SVNIIKSDGLKYVTVATASKDQTLRLWKFDAE  100 (347)
Q Consensus        24 ~~~v~~~~~~-~~~~l~sg~~d~~i~iw~~~~~~~~~l~~h~~~V~--~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~  100 (347)
                      .+||....+. ....++.+..++.+-+||..+.++..-..+.....  +........ ...++++|+.-++|.+|+....
T Consensus        87 s~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~-~~~~i~~gsv~~~iivW~~~~d  165 (967)
T KOG0974|consen   87 SDWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSA-EELYIASGSVFGEIIVWKPHED  165 (967)
T ss_pred             cccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccC-cEEEEEeccccccEEEEecccc
Confidence            4666665555 56688888899999999976544433333333221  222222121 4467999999999999998632


Q ss_pred             ccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccc
Q 036314          101 ELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAIS  180 (347)
Q Consensus       101 ~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (347)
                      +        .+. .+.||++.|.++.++-||.+++|.|.|.++|+|++++.+..+                        .
T Consensus       166 n--------~p~-~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~------------------------~  212 (967)
T KOG0974|consen  166 N--------KPI-RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG------------------------C  212 (967)
T ss_pred             C--------Ccc-eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC------------------------c
Confidence            1        111 477999999999999999999999999999999998754321                        2


Q ss_pred             cccCCccceEEEEeCCCCeEEEEecCCcEEEEECCCCceeeeeee--CeeeEEEEeeCCCCcEEEEecCCCcEEEEeCC
Q 036314          181 TLVGHTQCVSSVVWPQQETIYSASWDHSVRTWDVEMGKDLSDIFC--GKALNCIDIGGEGSALIAAGGSDPILRIWDPR  257 (347)
Q Consensus       181 ~~~~h~~~v~~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~  257 (347)
                      +.-+|+..++.+.+.+. .+++++.|.++++|+.+. ..+..+..  ...+..++.. ++...+.+++.|+.+++||+.
T Consensus       213 ~~fgHsaRvw~~~~~~n-~i~t~gedctcrvW~~~~-~~l~~y~~h~g~~iw~~~~~-~~~~~~vT~g~Ds~lk~~~l~  288 (967)
T KOG0974|consen  213 TGFGHSARVWACCFLPN-RIITVGEDCTCRVWGVNG-TQLEVYDEHSGKGIWKIAVP-IGVIIKVTGGNDSTLKLWDLN  288 (967)
T ss_pred             ccccccceeEEEEeccc-eeEEeccceEEEEEeccc-ceehhhhhhhhcceeEEEEc-CCceEEEeeccCcchhhhhhh
Confidence            44579999998887665 999999999999997543 33332221  2345666663 455678899999999999975

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.32  E-value=5.3e-10  Score=95.09  Aligned_cols=195  Identities=12%  Similarity=0.169  Sum_probs=130.2

Q ss_pred             cceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEeCCCCe
Q 036314          120 ASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWPQQET  199 (347)
Q Consensus       120 ~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  199 (347)
                      ..++...|+.+...|..|+.||. ++|+.+.....                        . ......-.|.-.-|+. ..
T Consensus         6 ~ti~~~~~Nqd~~~lsvGs~~Gy-k~~~~~~~~k~------------------------~-~~~~~~~~IvEmLFSS-SL   58 (391)
T KOG2110|consen    6 PTINFIGFNQDSTLLSVGSKDGY-KIFSCSPFEKC------------------------F-SKDTEGVSIVEMLFSS-SL   58 (391)
T ss_pred             cceeeeeeccceeEEEccCCCce-eEEecCchHHh------------------------h-cccCCCeEEEEeeccc-ce
Confidence            44566679999888888998875 67876542110                        0 0000111222333433 23


Q ss_pred             EEEEecC--CcEEEEECCCCceeeeeeeCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeE
Q 036314          200 IYSASWD--HSVRTWDVEMGKDLSDIFCGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISA  277 (347)
Q Consensus       200 l~s~s~d--g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~  277 (347)
                      ++..+.+  +.+++.+++....+..+.....+-++.+.   .+.+++.-+ ..|+|||++...-...+.+...+...+.+
T Consensus        59 vaiV~~~qpr~Lkv~~~Kk~~~ICe~~fpt~IL~VrmN---r~RLvV~Le-e~IyIydI~~MklLhTI~t~~~n~~gl~A  134 (391)
T KOG2110|consen   59 VAIVSIKQPRKLKVVHFKKKTTICEIFFPTSILAVRMN---RKRLVVCLE-ESIYIYDIKDMKLLHTIETTPPNPKGLCA  134 (391)
T ss_pred             eEEEecCCCceEEEEEcccCceEEEEecCCceEEEEEc---cceEEEEEc-ccEEEEecccceeehhhhccCCCccceEe
Confidence            3333333  45999999988888888888888888773   234455544 44999999854322223344456666777


Q ss_pred             EEeCCCCCeEEEEEe-CCCcEEEEEcCCCccceeecCCCCeEEEEeec-CCCEEEEccCCce-EEEeeccc
Q 036314          278 CKWHNKSWFHLISAS-YDGKVMLWDLRTAWPLSVIDSHKDKVLCADWW-RGDSVISGGVDSK-LCVSSGVS  345 (347)
Q Consensus       278 v~~s~~~~~~l~s~s-~D~~i~lwd~~~~~~~~~~~~h~~~v~~~~~~-~~~~l~s~s~D~~-v~vw~~~~  345 (347)
                      +.+++.+.++..-++ .-|.|.|||..+-+++..+..|++.+-|++|+ +|..|||+|.-|| |||.+.++
T Consensus       135 lS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~  205 (391)
T KOG2110|consen  135 LSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPE  205 (391)
T ss_pred             eccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCC
Confidence            777776655444444 35899999999988999999999999999997 5889999999887 56776653

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.31  E-value=8.6e-10  Score=101.80  Aligned_cols=210  Identities=12%  Similarity=0.051  Sum_probs=123.5

Q ss_pred             cEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEee---CCCcEEEEecCCCCCCCccceeeeccCCC
Q 036314           91 TLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGS---WDCTISLWRTNDSDAAGNQVSIKKRKGNN  167 (347)
Q Consensus        91 ~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs---~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~  167 (347)
                      .|.+||.+...          .+.+..+...+.+.+|+|||+.|+..+   .+..|.+|++.++..              
T Consensus       180 ~l~~~d~dg~~----------~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~--------------  235 (429)
T PRK03629        180 ELRVSDYDGYN----------QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV--------------  235 (429)
T ss_pred             eEEEEcCCCCC----------CEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCe--------------
Confidence            68888876542          123445667899999999999887544   245688888765321              


Q ss_pred             ccccccccccccccccCCccceEEEEe-CCCCeEEEE-ecCC--cEEEEECCCCceeeeeeeCeeeEEEEeeCCCCcEEE
Q 036314          168 QVEEPQLEGEAISTLVGHTQCVSSVVW-PQQETIYSA-SWDH--SVRTWDVEMGKDLSDIFCGKALNCIDIGGEGSALIA  243 (347)
Q Consensus       168 ~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~l~s~-s~dg--~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~la  243 (347)
                               ..+..+.++   +....| |+++.|+.. +.++  .|.+||+.++................|+|++..++.
T Consensus       236 ---------~~l~~~~~~---~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f  303 (429)
T PRK03629        236 ---------RQVASFPRH---NGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAY  303 (429)
T ss_pred             ---------EEccCCCCC---cCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEE
Confidence                     112222333   223566 677777654 4444  488899987754332222234556778776654544


Q ss_pred             EecCCCcEEEE--eCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCC--CcEEEEEcCCCccceeecCCCCeEE
Q 036314          244 AGGSDPILRIW--DPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYD--GKVMLWDLRTAWPLSVIDSHKDKVL  319 (347)
Q Consensus       244 ~~~~d~~i~iw--d~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D--~~i~lwd~~~~~~~~~~~~h~~~v~  319 (347)
                      +...++...||  |+...    ....+..+........|+|+|.+++.++..+  ..|.+||+.+++ ...+... ....
T Consensus       304 ~s~~~g~~~Iy~~d~~~g----~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~-~~~Lt~~-~~~~  377 (429)
T PRK03629        304 TSDQAGRPQVYKVNINGG----APQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG-VQVLTDT-FLDE  377 (429)
T ss_pred             EeCCCCCceEEEEECCCC----CeEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCC-eEEeCCC-CCCC
Confidence            44444555555  55422    1233333444556788999997644444433  358889998775 3334321 2234


Q ss_pred             EEeecC-CCEEEEccCCce---EEEee
Q 036314          320 CADWWR-GDSVISGGVDSK---LCVSS  342 (347)
Q Consensus       320 ~~~~~~-~~~l~s~s~D~~---v~vw~  342 (347)
                      ...|+| |+.|+.++.|+.   +.+++
T Consensus       378 ~p~~SpDG~~i~~~s~~~~~~~l~~~~  404 (429)
T PRK03629        378 TPSIAPNGTMVIYSSSQGMGSVLNLVS  404 (429)
T ss_pred             CceECCCCCEEEEEEcCCCceEEEEEE
Confidence            567875 777887777764   44444

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.29  E-value=8.7e-11  Score=100.44  Aligned_cols=175  Identities=18%  Similarity=0.255  Sum_probs=130.5

Q ss_pred             CceeeccCCC--CCEEEEEecC--CeEEEEcCCCeEEEEeeccCC-----------ceEEEEEeecCCCceEEEEEccCC
Q 036314           25 DWVSAVDGSN--PGFILTGCYD--NLGRVWKAGGVCTHILEGHCG-----------AVSSVNIIKSDGLKYVTVATASKD   89 (347)
Q Consensus        25 ~~v~~~~~~~--~~~l~sg~~d--~~i~iw~~~~~~~~~l~~h~~-----------~V~~v~~~~~~~~~~~~l~s~s~D   89 (347)
                      ..+..+.-.+  ..++|+||..  ..+++||+.+- .+++.+-.-           -++++.|.+...  ...+|+++.-
T Consensus       149 ~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~-~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~--~~~fat~T~~  225 (412)
T KOG3881|consen  149 PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQS-KQIWSAKNVPNDRLGLRVPVWITDIRFLEGSP--NYKFATITRY  225 (412)
T ss_pred             CceeeeccCCCCCceEecCchhcccceeeeecccc-eeeeeccCCCCccccceeeeeeccceecCCCC--CceEEEEecc
Confidence            4455555443  4578889999  88999998643 445554321           245777876432  2478999999


Q ss_pred             CcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCcc
Q 036314           90 QTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQV  169 (347)
Q Consensus        90 g~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~  169 (347)
                      ++||+||...+        .+++..|.--+.+++++...|+++++++|..-+.+..||++.+...               
T Consensus       226 hqvR~YDt~~q--------RRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~---------------  282 (412)
T KOG3881|consen  226 HQVRLYDTRHQ--------RRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLL---------------  282 (412)
T ss_pred             eeEEEecCccc--------CcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceee---------------
Confidence            99999998654        2566666666889999999999999999999999999998864321               


Q ss_pred             ccccccccccccccCCccceEEEEe-CCCCeEEEEecCCcEEEEECCCCceeeeeeeCeeeEEEEe
Q 036314          170 EEPQLEGEAISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDI  234 (347)
Q Consensus       170 ~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~  234 (347)
                               ...+.+-++.++++.. |.++.+++++.|+.|||+|+.+.+.+...+.....+++-+
T Consensus       283 ---------g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs~lt~il~  339 (412)
T KOG3881|consen  283 ---------GCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKSRLTFILL  339 (412)
T ss_pred             ---------ccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhccccEEEe
Confidence                     1235667788888876 5568999999999999999999777777766666666555

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.26  E-value=1.4e-09  Score=100.70  Aligned_cols=218  Identities=11%  Similarity=0.054  Sum_probs=125.6

Q ss_pred             CCcCCceeeccCC-CCCEEEEEecC---CeEEEEcCCCeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCC--cEEE
Q 036314           21 SLHDDWVSAVDGS-NPGFILTGCYD---NLGRVWKAGGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQ--TLRL   94 (347)
Q Consensus        21 ~~h~~~v~~~~~~-~~~~l~sg~~d---~~i~iw~~~~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg--~v~~   94 (347)
                      ..|...+...+++ +++.|+..+.+   ..+++||..+.....+..+.+...+.+|+|++.   ..+++.+.+|  .|.+
T Consensus       200 t~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~---~l~~~~s~~g~~~Iy~  276 (433)
T PRK04922        200 LRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGR---RLALTLSRDGNPEIYV  276 (433)
T ss_pred             ecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCC---EEEEEEeCCCCceEEE
Confidence            3456678888888 45688877644   469999986433334444555556789998654   2344555555  5888


Q ss_pred             EeccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEee-CCCcEEEE--ecCCCCCCCccceeeeccCCCcccc
Q 036314           95 WKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGS-WDCTISLW--RTNDSDAAGNQVSIKKRKGNNQVEE  171 (347)
Q Consensus        95 wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs-~Dg~I~iw--d~~~~~~~~~~~~~~~~~~~~~~~~  171 (347)
                      ||+.+++.          ..+..|.......+|+|||+.++..+ .++...||  ++.++..                  
T Consensus       277 ~d~~~g~~----------~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~------------------  328 (433)
T PRK04922        277 MDLGSRQL----------TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSA------------------  328 (433)
T ss_pred             EECCCCCe----------EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCe------------------
Confidence            88876542          23444544456789999999877555 45664555  4433210                  


Q ss_pred             ccccccccccccCCccceEEEEe-CCCCeEEEEecCC---cEEEEECCCCceeeeeeeCeeeEEEEeeCCCCcEEEEecC
Q 036314          172 PQLEGEAISTLVGHTQCVSSVVW-PQQETIYSASWDH---SVRTWDVEMGKDLSDIFCGKALNCIDIGGEGSALIAAGGS  247 (347)
Q Consensus       172 ~~~~~~~~~~~~~h~~~v~~~~~-~~~~~l~s~s~dg---~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~  247 (347)
                              ..+..+........| |+++.|+..+.++   .|.+||+.++... .+..........+++++..++.+...
T Consensus       329 --------~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~~~~~~~p~~spdG~~i~~~s~~  399 (433)
T PRK04922        329 --------ERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTPGSLDESPSFAPNGSMVLYATRE  399 (433)
T ss_pred             --------EEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECCCCCCCCCceECCCCCEEEEEEec
Confidence                    001111112233455 5788877654443   5889999877543 33322223345676665544444332


Q ss_pred             --CCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCC
Q 036314          248 --DPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHN  282 (347)
Q Consensus       248 --d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~  282 (347)
                        .+.|.++|+..  .  ....+..+...+...+|+|
T Consensus       400 ~g~~~L~~~~~~g--~--~~~~l~~~~g~~~~p~wsp  432 (433)
T PRK04922        400 GGRGVLAAVSTDG--R--VRQRLVSADGEVREPAWSP  432 (433)
T ss_pred             CCceEEEEEECCC--C--ceEEcccCCCCCCCCccCC
Confidence              34577777753  1  2344444555566677776

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.26  E-value=4e-10  Score=100.17  Aligned_cols=191  Identities=15%  Similarity=0.113  Sum_probs=120.0

Q ss_pred             EEEEccCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCC-CEEEEeeCCCcEEEEecCCCCCCCcccee
Q 036314           82 TVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSG-NMVCSGSWDCTISLWRTNDSDAAGNQVSI  160 (347)
Q Consensus        82 ~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~-~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~  160 (347)
                      -|+.|=.-|.|.+.|....+........+.     --+..|+++.|-|-+ ..++.+-++|.+.+||.+-....      
T Consensus       187 dllIGf~tGqvq~idp~~~~~sklfne~r~-----i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~------  255 (636)
T KOG2394|consen  187 DLLIGFTTGQVQLIDPINFEVSKLFNEERL-----INKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGA------  255 (636)
T ss_pred             ceEEeeccCceEEecchhhHHHHhhhhccc-----ccccceEEEEEEeCCCceEEEEEecCceEEeeccccccC------
Confidence            355677777888887654322111111111     124779999987754 46667788999999986321000      


Q ss_pred             eeccCCCccccccccccccccccCCccceEEEEeCCCCeEEEE-----ecCCcEEEEECCCCceeeeeeeCeeeEEEEee
Q 036314          161 KKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWPQQETIYSA-----SWDHSVRTWDVEMGKDLSDIFCGKALNCIDIG  235 (347)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~-----s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~  235 (347)
                                               +.+ ...+++++..+...     ..++-+.-|-+-          ...+...+|+
T Consensus       256 -------------------------t~p-~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~----------~g~in~f~FS  299 (636)
T KOG2394|consen  256 -------------------------TAP-SYQALKDGDQFAILTSKSKKTRNPVARWHIG----------EGSINEFAFS  299 (636)
T ss_pred             -------------------------CCC-cccccCCCCeeEEeeeeccccCCccceeEec----------cccccceeEc
Confidence                                     000 00011233322211     111122222221          2245667787


Q ss_pred             CCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecCCC
Q 036314          236 GEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHK  315 (347)
Q Consensus       236 ~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h~  315 (347)
                      + ++.++|+.++||.+||||....   ..+..+..--+...||.|||||. +|++|++|.-|.||.+..++.+..-+||+
T Consensus       300 ~-DG~~LA~VSqDGfLRvF~fdt~---eLlg~mkSYFGGLLCvcWSPDGK-yIvtGGEDDLVtVwSf~erRVVARGqGHk  374 (636)
T KOG2394|consen  300 P-DGKYLATVSQDGFLRIFDFDTQ---ELLGVMKSYFGGLLCVCWSPDGK-YIVTGGEDDLVTVWSFEERRVVARGQGHK  374 (636)
T ss_pred             C-CCceEEEEecCceEEEeeccHH---HHHHHHHhhccceEEEEEcCCcc-EEEecCCcceEEEEEeccceEEEeccccc
Confidence            6 6779999999999999997642   12233333445689999999996 59999999999999999988888889999


Q ss_pred             CeEEEEeec
Q 036314          316 DKVLCADWW  324 (347)
Q Consensus       316 ~~v~~~~~~  324 (347)
                      .-|..|+|-
T Consensus       375 SWVs~VaFD  383 (636)
T KOG2394|consen  375 SWVSVVAFD  383 (636)
T ss_pred             cceeeEeec
Confidence            999988884

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.25  E-value=1.6e-09  Score=100.05  Aligned_cols=222  Identities=11%  Similarity=0.069  Sum_probs=128.3

Q ss_pred             CCcCCceeeccCC-CCCEEEEEecC---CeEEEEcCCCeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEe
Q 036314           21 SLHDDWVSAVDGS-NPGFILTGCYD---NLGRVWKAGGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWK   96 (347)
Q Consensus        21 ~~h~~~v~~~~~~-~~~~l~sg~~d---~~i~iw~~~~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd   96 (347)
                      ..+...+.+.+++ +++.|+..+.+   ..|.+||+.+.....+....+.+.+.+|+|++.   ..+++.+.++..++|.
T Consensus       192 ~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~---~la~~~~~~g~~~Iy~  268 (427)
T PRK02889        192 LSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGR---TLAVALSRDGNSQIYT  268 (427)
T ss_pred             ccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCC---EEEEEEccCCCceEEE
Confidence            3566778888888 45678776643   369999986433334444445567889999654   2345678888888887


Q ss_pred             ccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEee-CCCcEEEEecCCCCCCCccceeeeccCCCcccccccc
Q 036314           97 FDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGS-WDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLE  175 (347)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs-~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (347)
                      ++...        .....+..|...+....|+|||+.++..+ .++...||.+.....  ..                  
T Consensus       269 ~d~~~--------~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g--~~------------------  320 (427)
T PRK02889        269 VNADG--------SGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGG--AA------------------  320 (427)
T ss_pred             EECCC--------CCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCC--ce------------------
Confidence            64321        01223444555556778999999776544 457778886542110  00                  


Q ss_pred             ccccccccCCccceEEEEe-CCCCeEEEEecCC---cEEEEECCCCceeeeeeeCeeeEEEEeeCCCCcEEEEecCCCc-
Q 036314          176 GEAISTLVGHTQCVSSVVW-PQQETIYSASWDH---SVRTWDVEMGKDLSDIFCGKALNCIDIGGEGSALIAAGGSDPI-  250 (347)
Q Consensus       176 ~~~~~~~~~h~~~v~~~~~-~~~~~l~s~s~dg---~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~d~~-  250 (347)
                       ..+ ++.+  .......| |+++.|+..+.++   .|.+||+.++... .+..........|+|++..++.+....+. 
T Consensus       321 -~~l-t~~g--~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~-~lt~~~~~~~p~~spdg~~l~~~~~~~g~~  395 (427)
T PRK02889        321 -QRV-TFTG--SYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVT-ALTDTTRDESPSFAPNGRYILYATQQGGRS  395 (427)
T ss_pred             -EEE-ecCC--CCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeE-EccCCCCccCceECCCCCEEEEEEecCCCE
Confidence             000 1111  11223445 6788887766554   5899999877543 33322223456777776655555444443 


Q ss_pred             -EEEEeCCCCCCCCCeEEecCCCCCeeEEEeCC
Q 036314          251 -LRIWDPRKPGTSAPVFQFSSHNSWISACKWHN  282 (347)
Q Consensus       251 -i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~  282 (347)
                       +.+.++.  +.  ....+..+.+.+...+|+|
T Consensus       396 ~l~~~~~~--g~--~~~~l~~~~g~~~~p~wsp  424 (427)
T PRK02889        396 VLAAVSSD--GR--IKQRLSVQGGDVREPSWGP  424 (427)
T ss_pred             EEEEEECC--CC--ceEEeecCCCCCCCCccCC
Confidence             4455553  22  2334444555667777876

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.25  E-value=3.5e-08  Score=82.66  Aligned_cols=176  Identities=18%  Similarity=0.308  Sum_probs=116.5

Q ss_pred             CeEEEEc-CCCeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeeeeccccceE
Q 036314           45 NLGRVWK-AGGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVH  123 (347)
Q Consensus        45 ~~i~iw~-~~~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~  123 (347)
                      +.+.||| ....++..|. -..+|.+|.+.++      .|+. =..+.|.+|....+     ++...++.+....++ +-
T Consensus        75 NkviIWDD~k~~~i~el~-f~~~I~~V~l~r~------riVv-vl~~~I~VytF~~n-----~k~l~~~et~~NPkG-lC  140 (346)
T KOG2111|consen   75 NKVIIWDDLKERCIIELS-FNSEIKAVKLRRD------RIVV-VLENKIYVYTFPDN-----PKLLHVIETRSNPKG-LC  140 (346)
T ss_pred             ceEEEEecccCcEEEEEE-eccceeeEEEcCC------eEEE-EecCeEEEEEcCCC-----hhheeeeecccCCCc-eE
Confidence            4799998 4456666665 3466999988763      2333 24568999998643     122223332221222 22


Q ss_pred             EEEEeCCCCEEE-EeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEeC-CCCeEE
Q 036314          124 SIAAETSGNMVC-SGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWP-QQETIY  201 (347)
Q Consensus       124 ~v~~s~~~~~l~-sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~l~  201 (347)
                      ++.-..+..+|| -|-.-|.|+|-|+......                       ....+..|...|.+++.. +|..+|
T Consensus       141 ~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~-----------------------~p~~I~AH~s~Iacv~Ln~~Gt~vA  197 (346)
T KOG2111|consen  141 SLCPTSNKSLLAFPGFKTGQVQIVDLASTKPN-----------------------APSIINAHDSDIACVALNLQGTLVA  197 (346)
T ss_pred             eecCCCCceEEEcCCCccceEEEEEhhhcCcC-----------------------CceEEEcccCceeEEEEcCCccEEE
Confidence            222111222333 2445578888877543210                       123567899999999985 778899


Q ss_pred             EEecCCc-EEEEECCCCceeeeeeeC---eeeEEEEeeCCCCcEEEEecCCCcEEEEeCCC
Q 036314          202 SASWDHS-VRTWDVEMGKDLSDIFCG---KALNCIDIGGEGSALIAAGGSDPILRIWDPRK  258 (347)
Q Consensus       202 s~s~dg~-v~vwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~  258 (347)
                      |+|..|+ |||||.+++..+..+.-+   ..+.|++|+|+ ...+|++++-|+++||.++.
T Consensus       198 TaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~-~s~LavsSdKgTlHiF~l~~  257 (346)
T KOG2111|consen  198 TASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPN-SSWLAVSSDKGTLHIFSLRD  257 (346)
T ss_pred             EeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCC-ccEEEEEcCCCeEEEEEeec
Confidence            9999998 789999999998887643   46899999765 56889999999999999875

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.25  E-value=1.3e-11  Score=110.01  Aligned_cols=207  Identities=19%  Similarity=0.256  Sum_probs=140.6

Q ss_pred             eeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEE
Q 036314          112 FKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSS  191 (347)
Q Consensus       112 ~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~  191 (347)
                      +..+.||+..|+.++--.+.+-++++|.|+||++|.+......                  .-+..+..++..|+++|.+
T Consensus       728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~------------------~~tsaCQfTY~aHkk~i~~  789 (1034)
T KOG4190|consen  728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDE------------------IGTSACQFTYQAHKKPIHD  789 (1034)
T ss_pred             eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCc------------------cccceeeeEhhhccCcccc
Confidence            4568899999999876667788999999999999988642110                  0012345678889999999


Q ss_pred             EEeC-CCCeEEEEecCCcEEEEECCCCceeeeeee------CeeeEEEEeeCCCCcEE-EEecCCCcEEEEeCCCCCCCC
Q 036314          192 VVWP-QQETIYSASWDHSVRTWDVEMGKDLSDIFC------GKALNCIDIGGEGSALI-AAGGSDPILRIWDPRKPGTSA  263 (347)
Q Consensus       192 ~~~~-~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~------~~~~~~~~~~~~~~~~l-a~~~~d~~i~iwd~~~~~~~~  263 (347)
                      +.|- +.++++  +.|+.|.+||.--++.+..+..      ...+.|+.-  .+..++ |.++...+|+++|.|..+-.-
T Consensus       790 igfL~~lr~i~--ScD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~n--v~~~iliAgcsaeSTVKl~DaRsce~~~  865 (1034)
T KOG4190|consen  790 IGFLADLRSIA--SCDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLEN--VDRHILIAGCSAESTVKLFDARSCEWTC  865 (1034)
T ss_pred             eeeeeccceee--eccCcceeecccccchhHhhhcCcccCCCceeEeccc--Ccchheeeeccchhhheeeeccccccee
Confidence            9874 444555  5689999999877776654432      123444422  233444 444788999999988643211


Q ss_pred             C--eEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecCCCCeEEEEeecCCCEEEEccCCceEEE-
Q 036314          264 P--VFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKVLCADWWRGDSVISGGVDSKLCV-  340 (347)
Q Consensus       264 ~--~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~D~~v~v-  340 (347)
                      .  +...++....+.+++..|.|. .+|.+=.+|.|.+.|.|+|+.+..+..-+-..+-++-..++.|+....|.++.| 
T Consensus       866 E~kVcna~~Pna~~R~iaVa~~GN-~lAa~LSnGci~~LDaR~G~vINswrpmecdllqlaapsdq~L~~saldHslaVn  944 (1034)
T KOG4190|consen  866 ELKVCNAPGPNALTRAIAVADKGN-KLAAALSNGCIAILDARNGKVINSWRPMECDLLQLAAPSDQALAQSALDHSLAVN  944 (1034)
T ss_pred             eEEeccCCCCchheeEEEeccCcc-hhhHHhcCCcEEEEecCCCceeccCCcccchhhhhcCchhHHHHhhcccceeEee
Confidence            1  222245566788999988885 588888899999999999988777654333344444333445666666777766 


Q ss_pred             e
Q 036314          341 S  341 (347)
Q Consensus       341 w  341 (347)
                      |
T Consensus       945 W  945 (1034)
T KOG4190|consen  945 W  945 (1034)
T ss_pred             e
Confidence            5

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.24  E-value=6e-09  Score=96.68  Aligned_cols=233  Identities=11%  Similarity=0.075  Sum_probs=131.0

Q ss_pred             eEEEEcCCCeEEEEeeccCCceEEEEEeecCCCceEEEEEc-cCCC--cEEEEeccccccccCccccceeeeeeccccce
Q 036314           46 LGRVWKAGGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATA-SKDQ--TLRLWKFDAEELVNHPKKIRSFKILRGHKASV  122 (347)
Q Consensus        46 ~i~iw~~~~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~-s~Dg--~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V  122 (347)
                      .+.++|..|...+.+..+...+.+..|+|++.    .|+-. ..++  .|.+||+.+++.       +.+..+.   ...
T Consensus       199 ~l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~----~La~~s~~~g~~~L~~~dl~tg~~-------~~lt~~~---g~~  264 (448)
T PRK04792        199 QLMIADYDGYNEQMLLRSPEPLMSPAWSPDGR----KLAYVSFENRKAEIFVQDIYTQVR-------EKVTSFP---GIN  264 (448)
T ss_pred             EEEEEeCCCCCceEeecCCCcccCceECCCCC----EEEEEEecCCCcEEEEEECCCCCe-------EEecCCC---CCc
Confidence            56666776655566667777888999999653    34433 3333  577778766532       1122222   223


Q ss_pred             EEEEEeCCCCEEE-EeeCCCc--EEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEe-CCCC
Q 036314          123 HSIAAETSGNMVC-SGSWDCT--ISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW-PQQE  198 (347)
Q Consensus       123 ~~v~~s~~~~~l~-sgs~Dg~--I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~  198 (347)
                      ...+|+|||+.|+ +.+.++.  |.++|+.++.                          ...+..+........| |+++
T Consensus       265 ~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~--------------------------~~~lt~~~~~~~~p~wSpDG~  318 (448)
T PRK04792        265 GAPRFSPDGKKLALVLSKDGQPEIYVVDIATKA--------------------------LTRITRHRAIDTEPSWHPDGK  318 (448)
T ss_pred             CCeeECCCCCEEEEEEeCCCCeEEEEEECCCCC--------------------------eEECccCCCCccceEECCCCC
Confidence            4678999999765 5677776  5555654421                          1112222223344556 5777


Q ss_pred             eEEEEec-CCc--EEEEECCCCceeeeee-eCeeeEEEEeeCCCCcEEEEecCCCc--EEEEeCCCCCCCCCeEEecCCC
Q 036314          199 TIYSASW-DHS--VRTWDVEMGKDLSDIF-CGKALNCIDIGGEGSALIAAGGSDPI--LRIWDPRKPGTSAPVFQFSSHN  272 (347)
Q Consensus       199 ~l~s~s~-dg~--v~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~la~~~~d~~--i~iwd~~~~~~~~~~~~~~~h~  272 (347)
                      .|+..+. ++.  |.++|+.+++.. .+. .........++|++..++.+...++.  |.++|+....    ...+... 
T Consensus       319 ~I~f~s~~~g~~~Iy~~dl~~g~~~-~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~----~~~lt~~-  392 (448)
T PRK04792        319 SLIFTSERGGKPQIYRVNLASGKVS-RLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGA----MQVLTST-  392 (448)
T ss_pred             EEEEEECCCCCceEEEEECCCCCEE-EEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCC----eEEccCC-
Confidence            7655543 344  555677766533 232 22222345677766655555444554  4456765321    2222222 


Q ss_pred             CCeeEEEeCCCCCeEEEEEeCCCc--EEEEEcCCCccceeecCCCCeEEEEeecC
Q 036314          273 SWISACKWHNKSWFHLISASYDGK--VMLWDLRTAWPLSVIDSHKDKVLCADWWR  325 (347)
Q Consensus       273 ~~v~~v~~s~~~~~~l~s~s~D~~--i~lwd~~~~~~~~~~~~h~~~v~~~~~~~  325 (347)
                      .......|+|++..++.+...++.  +.+++.+ +.....+..+.+.+...+|+|
T Consensus       393 ~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~-G~~~~~l~~~~g~~~~p~Wsp  446 (448)
T PRK04792        393 RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSID-GRFKARLPAGQGEVKSPAWSP  446 (448)
T ss_pred             CCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEECcCCCCCcCCCccCC
Confidence            122345799999875665555554  6666774 555666666666777778875

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.24  E-value=5e-09  Score=97.12  Aligned_cols=233  Identities=13%  Similarity=0.092  Sum_probs=131.6

Q ss_pred             eEEEEcCCCeEEEEeeccCCceEEEEEeecCCCceEEEEEccC-C--CcEEEEeccccccccCccccceeeeeeccccce
Q 036314           46 LGRVWKAGGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASK-D--QTLRLWKFDAEELVNHPKKIRSFKILRGHKASV  122 (347)
Q Consensus        46 ~i~iw~~~~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~-D--g~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V  122 (347)
                      .+.++|..|...+.+..+...+.+..|+|++.    .|+..+. +  ..|.+|++.+++.          ..+......+
T Consensus       180 ~l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~----~la~~s~~~~~~~l~~~~l~~g~~----------~~l~~~~g~~  245 (430)
T PRK00178        180 TLQRSDYDGARAVTLLQSREPILSPRWSPDGK----RIAYVSFEQKRPRIFVQNLDTGRR----------EQITNFEGLN  245 (430)
T ss_pred             EEEEECCCCCCceEEecCCCceeeeeECCCCC----EEEEEEcCCCCCEEEEEECCCCCE----------EEccCCCCCc
Confidence            46777877766666767778889999999653    4544433 2  3688889876542          1122223334


Q ss_pred             EEEEEeCCCCEEE-EeeCCC--cEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEe-CCCC
Q 036314          123 HSIAAETSGNMVC-SGSWDC--TISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW-PQQE  198 (347)
Q Consensus       123 ~~v~~s~~~~~l~-sgs~Dg--~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~  198 (347)
                      ...+|+|||+.|+ +.+.++  .|.+||+.+...                          ..+..+........| |+++
T Consensus       246 ~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~--------------------------~~lt~~~~~~~~~~~spDg~  299 (430)
T PRK00178        246 GAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQL--------------------------SRVTNHPAIDTEPFWGKDGR  299 (430)
T ss_pred             CCeEECCCCCEEEEEEccCCCceEEEEECCCCCe--------------------------EEcccCCCCcCCeEECCCCC
Confidence            5678999998776 555665  466777764321                          111122222333456 5777


Q ss_pred             eEEEEec-CC--cEEEEECCCCceeeeeee-CeeeEEEEeeCCCCcEEEEecCCC--cEEEEeCCCCCCCCCeEEecCCC
Q 036314          199 TIYSASW-DH--SVRTWDVEMGKDLSDIFC-GKALNCIDIGGEGSALIAAGGSDP--ILRIWDPRKPGTSAPVFQFSSHN  272 (347)
Q Consensus       199 ~l~s~s~-dg--~v~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~la~~~~d~--~i~iwd~~~~~~~~~~~~~~~h~  272 (347)
                      .|+..+. ++  .|.++|+.+++.. .+.. ........+++++..++.+...++  .|.++|+....    ...+. +.
T Consensus       300 ~i~f~s~~~g~~~iy~~d~~~g~~~-~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~----~~~lt-~~  373 (430)
T PRK00178        300 TLYFTSDRGGKPQIYKVNVNGGRAE-RVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGS----VRILT-DT  373 (430)
T ss_pred             EEEEEECCCCCceEEEEECCCCCEE-EeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCC----EEEcc-CC
Confidence            7665553 33  4666787766532 2222 222233566666554444443343  57788876422    22222 12


Q ss_pred             CCeeEEEeCCCCCeEEEEEeCCC--cEEEEEcCCCccceeecCCCCeEEEEeecC
Q 036314          273 SWISACKWHNKSWFHLISASYDG--KVMLWDLRTAWPLSVIDSHKDKVLCADWWR  325 (347)
Q Consensus       273 ~~v~~v~~s~~~~~~l~s~s~D~--~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~  325 (347)
                      .......|+|+|..++.+...++  .+.+++++. .....+..+.+.+...+|+|
T Consensus       374 ~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g-~~~~~l~~~~g~~~~p~ws~  427 (430)
T PRK00178        374 SLDESPSVAPNGTMLIYATRQQGRGVLMLVSING-RVRLPLPTAQGEVREPSWSP  427 (430)
T ss_pred             CCCCCceECCCCCEEEEEEecCCceEEEEEECCC-CceEECcCCCCCcCCCccCC
Confidence            22335689999976555555444  466667753 34445555556677777764

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.24  E-value=7.8e-09  Score=95.50  Aligned_cols=230  Identities=13%  Similarity=0.062  Sum_probs=130.6

Q ss_pred             eEEEEcCCCeEEEEeeccCCceEEEEEeecCCCceEEEEEccCC---CcEEEEeccccccccCccccceeeeeeccccce
Q 036314           46 LGRVWKAGGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKD---QTLRLWKFDAEELVNHPKKIRSFKILRGHKASV  122 (347)
Q Consensus        46 ~i~iw~~~~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~D---g~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V  122 (347)
                      .+.++|..+...+.+..+...+.+.+|+|++.    .|+..+.+   .+|.+||+.+++.          ..+..+...+
T Consensus       171 ~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~----~la~~~~~~~~~~i~v~d~~~g~~----------~~~~~~~~~~  236 (417)
T TIGR02800       171 ELQVADYDGANPQTITRSREPILSPAWSPDGQ----KLAYVSFESGKPEIYVQDLATGQR----------EKVASFPGMN  236 (417)
T ss_pred             eEEEEcCCCCCCEEeecCCCceecccCCCCCC----EEEEEEcCCCCcEEEEEECCCCCE----------EEeecCCCCc
Confidence            57777876655566667777788999999553    45544432   4799999876532          1233445556


Q ss_pred             EEEEEeCCCCEEE-EeeCCC--cEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEe-CCCC
Q 036314          123 HSIAAETSGNMVC-SGSWDC--TISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW-PQQE  198 (347)
Q Consensus       123 ~~v~~s~~~~~l~-sgs~Dg--~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~  198 (347)
                      .+.+|+|||+.|+ +.+.++  .|.+|++.+...                          ..+..+........| ++++
T Consensus       237 ~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~--------------------------~~l~~~~~~~~~~~~s~dg~  290 (417)
T TIGR02800       237 GAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQL--------------------------TRLTNGPGIDTEPSWSPDGK  290 (417)
T ss_pred             cceEECCCCCEEEEEECCCCCccEEEEECCCCCE--------------------------EECCCCCCCCCCEEECCCCC
Confidence            7789999998665 555555  477777764321                          111112222223345 5777


Q ss_pred             eEEEEecC-C--cEEEEECCCCceeeeee-eCeeeEEEEeeCCCCcEEEEecCCC---cEEEEeCCCCCCCCCeEEecCC
Q 036314          199 TIYSASWD-H--SVRTWDVEMGKDLSDIF-CGKALNCIDIGGEGSALIAAGGSDP---ILRIWDPRKPGTSAPVFQFSSH  271 (347)
Q Consensus       199 ~l~s~s~d-g--~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~la~~~~d~---~i~iwd~~~~~~~~~~~~~~~h  271 (347)
                      .|+.++.. +  .|.++|+.+++.. .+. .........+++++. .++.+..++   .|.+||+... .   ...+..+
T Consensus       291 ~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~~~~~~~spdg~-~i~~~~~~~~~~~i~~~d~~~~-~---~~~l~~~  364 (417)
T TIGR02800       291 SIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGGYNASPSWSPDGD-LIAFVHREGGGFNIAVMDLDGG-G---ERVLTDT  364 (417)
T ss_pred             EEEEEECCCCCceEEEEECCCCCEE-EeecCCCCccCeEECCCCC-EEEEEEccCCceEEEEEeCCCC-C---eEEccCC
Confidence            77665543 3  4667787766532 232 233445567766654 555555454   7888887642 1   2223222


Q ss_pred             CCCeeEEEeCCCCCeEEEEEeCCC--cEEEEEcCCCccceeecCCCCeEEEEee
Q 036314          272 NSWISACKWHNKSWFHLISASYDG--KVMLWDLRTAWPLSVIDSHKDKVLCADW  323 (347)
Q Consensus       272 ~~~v~~v~~s~~~~~~l~s~s~D~--~i~lwd~~~~~~~~~~~~h~~~v~~~~~  323 (347)
                       .......|+|++..++++...++  .+.+.+.. +.....+..+.+.+...+|
T Consensus       365 -~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~g~~~~~~w  416 (417)
T TIGR02800       365 -GLDESPSFAPNGRMILYATTRGGRGVLGLVSTD-GRFRARLPLGNGDVREPAW  416 (417)
T ss_pred             -CCCCCceECCCCCEEEEEEeCCCcEEEEEEECC-CceeeECCCCCCCcCCCCC
Confidence             22345689999976444444443  34455543 4444445444455555555

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.23  E-value=4.8e-09  Score=89.20  Aligned_cols=201  Identities=17%  Similarity=0.287  Sum_probs=127.0

Q ss_pred             ceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeeee-ccccceEEEEEeCCC-CEEEEeeCCCcE
Q 036314           66 AVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILR-GHKASVHSIAAETSG-NMVCSGSWDCTI  143 (347)
Q Consensus        66 ~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~-~h~~~V~~v~~s~~~-~~l~sgs~Dg~I  143 (347)
                      .+..++|++-    ...++.+..|-+||+|+-....          ...++ .....|++++|-|.+ +.|+.|... -|
T Consensus       100 dlr~~aWhqH----~~~fava~nddvVriy~ksst~----------pt~Lks~sQrnvtclawRPlsaselavgCr~-gI  164 (445)
T KOG2139|consen  100 DLRGVAWHQH----IIAFAVATNDDVVRIYDKSSTC----------PTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GI  164 (445)
T ss_pred             ceeeEeechh----hhhhhhhccCcEEEEeccCCCC----------CceecchhhcceeEEEeccCCcceeeeeecc-ee
Confidence            4566777762    2246889999999999966421          11121 235679999999876 455656554 67


Q ss_pred             EEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEeC-CCCeEEEEecC-CcEEEEECCCCceee
Q 036314          144 SLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWP-QQETIYSASWD-HSVRTWDVEMGKDLS  221 (347)
Q Consensus       144 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~l~s~s~d-g~v~vwd~~~~~~~~  221 (347)
                      .+|.............     ..     ... ...+....|| .+|.++.|. ++..+++++.+ ..|.|||..++..+.
T Consensus       165 ciW~~s~tln~~r~~~-----~~-----s~~-~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~p  232 (445)
T KOG2139|consen  165 CIWSDSRTLNANRNIR-----MM-----STH-HLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIP  232 (445)
T ss_pred             EEEEcCcccccccccc-----cc-----ccc-chhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccc
Confidence            8997653221111000     00     000 0112234556 689999995 67778887765 579999999887655


Q ss_pred             eee-eCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcE
Q 036314          222 DIF-CGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKV  297 (347)
Q Consensus       222 ~~~-~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i  297 (347)
                      -.. ....+.-+.++|++. .+.++.-|+..++|...+.....+..   -..++|....|+|+|..+|.+++...++
T Consensus       233 L~~~glgg~slLkwSPdgd-~lfaAt~davfrlw~e~q~wt~erw~---lgsgrvqtacWspcGsfLLf~~sgsp~l  305 (445)
T KOG2139|consen  233 LIPKGLGGFSLLKWSPDGD-VLFAATCDAVFRLWQENQSWTKERWI---LGSGRVQTACWSPCGSFLLFACSGSPRL  305 (445)
T ss_pred             ccccCCCceeeEEEcCCCC-EEEEecccceeeeehhcccceeccee---ccCCceeeeeecCCCCEEEEEEcCCceE
Confidence            432 234567788877665 55566789999999765433322222   2334899999999999888887765443

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.23  E-value=3.4e-09  Score=98.25  Aligned_cols=218  Identities=12%  Similarity=0.029  Sum_probs=127.5

Q ss_pred             CCCcCCceeeccCC-CCCEEEEEec---CCeEEEEcCCCeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCc--EE
Q 036314           20 PSLHDDWVSAVDGS-NPGFILTGCY---DNLGRVWKAGGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQT--LR   93 (347)
Q Consensus        20 ~~~h~~~v~~~~~~-~~~~l~sg~~---d~~i~iw~~~~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~--v~   93 (347)
                      ...|...+...+++ +++.|+..+.   +..|++||+.+.....+..+.+.+.+.+|+|++.   ..+++.+.++.  |.
T Consensus       197 lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~---~la~~~~~~g~~~Iy  273 (435)
T PRK05137        197 LTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGR---KVVMSLSQGGNTDIY  273 (435)
T ss_pred             EecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCC---EEEEEEecCCCceEE
Confidence            34577788888888 4567777664   4689999986544455666777778889999653   24456677766  55


Q ss_pred             EEeccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEee-CCC--cEEEEecCCCCCCCccceeeeccCCCccc
Q 036314           94 LWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGS-WDC--TISLWRTNDSDAAGNQVSIKKRKGNNQVE  170 (347)
Q Consensus        94 ~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs-~Dg--~I~iwd~~~~~~~~~~~~~~~~~~~~~~~  170 (347)
                      +||+.+++          ...+..|........|+|||+.++..+ .++  .|.++|+.....                 
T Consensus       274 ~~d~~~~~----------~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~-----------------  326 (435)
T PRK05137        274 TMDLRSGT----------TTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP-----------------  326 (435)
T ss_pred             EEECCCCc----------eEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe-----------------
Confidence            55765543          223445555566789999999877655 444  466666543211                 


Q ss_pred             cccccccccccccCCccceEEEEe-CCCCeEEEEecC---CcEEEEECCCCceeeeeeeCeeeEEEEeeCCCCcEEEEec
Q 036314          171 EPQLEGEAISTLVGHTQCVSSVVW-PQQETIYSASWD---HSVRTWDVEMGKDLSDIFCGKALNCIDIGGEGSALIAAGG  246 (347)
Q Consensus       171 ~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~l~s~s~d---g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~  246 (347)
                               +.+..+...+....| |+++.|+..+.+   ..|.+||+..+. ...+..........|+|++..++.+..
T Consensus       327 ---------~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~-~~~lt~~~~~~~p~~spDG~~i~~~~~  396 (435)
T PRK05137        327 ---------RRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG-ERILTSGFLVEGPTWAPNGRVIMFFRQ  396 (435)
T ss_pred             ---------EEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc-eEeccCCCCCCCCeECCCCCEEEEEEc
Confidence                     111111222334456 678887766544   257788875543 233333333456678776655444443


Q ss_pred             CC-----CcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCC
Q 036314          247 SD-----PILRIWDPRKPGTSAPVFQFSSHNSWISACKWHN  282 (347)
Q Consensus       247 ~d-----~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~  282 (347)
                      ..     ..+.++|+....    ...+. ....+...+|+|
T Consensus       397 ~~~~~~~~~L~~~dl~g~~----~~~l~-~~~~~~~p~Wsp  432 (435)
T PRK05137        397 TPGSGGAPKLYTVDLTGRN----EREVP-TPGDASDPAWSP  432 (435)
T ss_pred             cCCCCCcceEEEEECCCCc----eEEcc-CCCCccCcccCC
Confidence            22     357777775321    22333 222355566765

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.21  E-value=4.7e-08  Score=87.99  Aligned_cols=275  Identities=13%  Similarity=0.110  Sum_probs=149.1

Q ss_pred             EEEEEecCCeEEEEcCC-CeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeee
Q 036314           37 FILTGCYDNLGRVWKAG-GVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKIL  115 (347)
Q Consensus        37 ~l~sg~~d~~i~iw~~~-~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~  115 (347)
                      ++++-..++.+.+.|.. .+.+..+......-..+.|++++    ++++.++.||.|.++|+.+.+.         ++++
T Consensus         8 ~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dg----r~~yv~~rdg~vsviD~~~~~~---------v~~i   74 (369)
T PF02239_consen    8 FYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDG----RYLYVANRDGTVSVIDLATGKV---------VATI   74 (369)
T ss_dssp             EEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-S----SEEEEEETTSEEEEEETTSSSE---------EEEE
T ss_pred             EEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCC----CEEEEEcCCCeEEEEECCcccE---------EEEE
Confidence            34566678999999975 46677777544433446677743    3567778899999999987653         3344


Q ss_pred             eccccceEEEEEeCCCCEEEEee-CCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEe
Q 036314          116 RGHKASVHSIAAETSGNMVCSGS-WDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW  194 (347)
Q Consensus       116 ~~h~~~V~~v~~s~~~~~l~sgs-~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  194 (347)
                      +.- ....++++++||++++++. .++.+.++|.++.+....... ..                 .........+.++..
T Consensus        75 ~~G-~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~-~~-----------------~~~~~~~~Rv~aIv~  135 (369)
T PF02239_consen   75 KVG-GNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPT-GG-----------------MPVDGPESRVAAIVA  135 (369)
T ss_dssp             E-S-SEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE---E-----------------E-TTTS---EEEEEE
T ss_pred             ecC-CCcceEEEcCCCCEEEEEecCCCceeEeccccccceeeccc-cc-----------------ccccccCCCceeEEe
Confidence            433 3357899999999888665 689999999876532111000 00                 000012233455543


Q ss_pred             -CCCCeEEEEecC-CcEEEEECCCCceee--eeeeCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCC---------
Q 036314          195 -PQQETIYSASWD-HSVRTWDVEMGKDLS--DIFCGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGT---------  261 (347)
Q Consensus       195 -~~~~~l~s~s~d-g~v~vwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~---------  261 (347)
                       +....++..-.| +.|-+-|......+.  .+..........+.+++..++++...++.|.++|......         
T Consensus       136 s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~  215 (369)
T PF02239_consen  136 SPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKK  215 (369)
T ss_dssp             -SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSS
T ss_pred             cCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeecccc
Confidence             444544444444 667777876654332  2223334555667676665666666677888887653110         


Q ss_pred             C-------------------------------------------CCeEEecCCCCCeeEEEeCCCCCeEEEEE----eCC
Q 036314          262 S-------------------------------------------APVFQFSSHNSWISACKWHNKSWFHLISA----SYD  294 (347)
Q Consensus       262 ~-------------------------------------------~~~~~~~~h~~~v~~v~~s~~~~~~l~s~----s~D  294 (347)
                      +                                           +.+.++...... .-++.+|++.+ |...    ...
T Consensus       216 p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~-vwvd~~~~~~~  293 (369)
T PF02239_consen  216 PHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRY-VWVDTFLNPDA  293 (369)
T ss_dssp             BEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SE-EEEE-TT-SSH
T ss_pred             ccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCcc-EEeeccCCCCC
Confidence            0                                           000111111122 33567888876 5555    456


Q ss_pred             CcEEEEEcCCCccceeecCCC-CeEEEEeecC-CCE-EEEccC-CceEEEeeccc
Q 036314          295 GKVMLWDLRTAWPLSVIDSHK-DKVLCADWWR-GDS-VISGGV-DSKLCVSSGVS  345 (347)
Q Consensus       295 ~~i~lwd~~~~~~~~~~~~h~-~~v~~~~~~~-~~~-l~s~s~-D~~v~vw~~~~  345 (347)
                      ++|.++|.++.+.+.++.... ..+.-++|++ |+. .+|.-. ++.|.|++..+
T Consensus       294 ~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~T  348 (369)
T PF02239_consen  294 DTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKT  348 (369)
T ss_dssp             T-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTT
T ss_pred             ceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCC
Confidence            899999999987666664222 2478899984 665 344433 44899998764

...

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.20  E-value=2.4e-09  Score=87.58  Aligned_cols=127  Identities=16%  Similarity=0.339  Sum_probs=87.1

Q ss_pred             cEEEEECCC-Cceeeeeee--CeeeEEEEeeCCCCcEEEE-ecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCC
Q 036314          208 SVRTWDVEM-GKDLSDIFC--GKALNCIDIGGEGSALIAA-GGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNK  283 (347)
Q Consensus       208 ~v~vwd~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~la~-~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~  283 (347)
                      ...+|-++. +.....+..  ..++..++|+|++..+++. |..+..|.+||++    ..++..+  +...+..+.|+|+
T Consensus        38 ~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~----~~~i~~~--~~~~~n~i~wsP~  111 (194)
T PF08662_consen   38 EFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK----GKKIFSF--GTQPRNTISWSPD  111 (194)
T ss_pred             eEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCc----ccEeEee--cCCCceEEEECCC
Confidence            355555522 223333332  3368999998877665444 4457799999986    2335555  4567789999999


Q ss_pred             CCeEEEEEeC---CCcEEEEEcCCCccceeecCCCCeEEEEeecC-CCEEEEccC------CceEEEeec
Q 036314          284 SWFHLISASY---DGKVMLWDLRTAWPLSVIDSHKDKVLCADWWR-GDSVISGGV------DSKLCVSSG  343 (347)
Q Consensus       284 ~~~~l~s~s~---D~~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~l~s~s~------D~~v~vw~~  343 (347)
                      |.+ |+.|+.   .|.+.+||.++.+.+.+++ |. .+..++|+| |++|++++.      |..++||+-
T Consensus       112 G~~-l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~  178 (194)
T PF08662_consen  112 GRF-LVLAGFGNLNGDLEFWDVRKKKKISTFE-HS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSF  178 (194)
T ss_pred             CCE-EEEEEccCCCcEEEEEECCCCEEeeccc-cC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEe
Confidence            975 666654   4679999999877777654 33 468899986 778887764      788899874

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.14  E-value=2.2e-09  Score=87.78  Aligned_cols=129  Identities=11%  Similarity=0.172  Sum_probs=91.1

Q ss_pred             EEEEEEeccCCCCcCCCCCcCCceeeccCCC-CCEE--EEEecCCeEEEEcCCCeEEEEeeccCCceEEEEEeecCCCce
Q 036314            4 LEIEYIKAVAPQKEEEPSLHDDWVSAVDGSN-PGFI--LTGCYDNLGRVWKAGGVCTHILEGHCGAVSSVNIIKSDGLKY   80 (347)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~l--~sg~~d~~i~iw~~~~~~~~~l~~h~~~V~~v~~~~~~~~~~   80 (347)
                      .+|=++.+...+.........+.|.++++++ +..|  ++|..+..|++||..+..+..+.  ...++.|.|+|.+.   
T Consensus        39 ~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~~~i~~~~--~~~~n~i~wsP~G~---  113 (194)
T PF08662_consen   39 FELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKGKKIFSFG--TQPRNTISWSPDGR---  113 (194)
T ss_pred             EEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCcccEeEeec--CCCceEEEECCCCC---
Confidence            4566665554444455555566799999885 4543  34557789999999876666554  46678999999553   


Q ss_pred             EEEEEccC---CCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeC------CCcEEEEecC
Q 036314           81 VTVATASK---DQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSW------DCTISLWRTN  149 (347)
Q Consensus        81 ~~l~s~s~---Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~------Dg~I~iwd~~  149 (347)
                       +|++++.   .|.|.+||+...+.         +... .| ..++.++|+|||++++++..      |..++||+..
T Consensus       114 -~l~~~g~~n~~G~l~~wd~~~~~~---------i~~~-~~-~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~  179 (194)
T PF08662_consen  114 -FLVLAGFGNLNGDLEFWDVRKKKK---------ISTF-EH-SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ  179 (194)
T ss_pred             -EEEEEEccCCCcEEEEEECCCCEE---------eecc-cc-CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence             6777654   46799999975432         2222 23 34788999999999998763      8899999875

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.14  E-value=6.9e-07  Score=80.22  Aligned_cols=285  Identities=12%  Similarity=0.184  Sum_probs=160.9

Q ss_pred             EEEEecC----CeEEEEcC--C-CeEE--EEeeccCCceEEEEEeecCCCceEEEEEccC----CCcEEEEecccccccc
Q 036314           38 ILTGCYD----NLGRVWKA--G-GVCT--HILEGHCGAVSSVNIIKSDGLKYVTVATASK----DQTLRLWKFDAEELVN  104 (347)
Q Consensus        38 l~sg~~d----~~i~iw~~--~-~~~~--~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~----Dg~v~~wd~~~~~~~~  104 (347)
                      ++.|++.    +.|.+|+.  . +...  ..+. -......+.+++++.    +|.+..+    ++.|..|++...+   
T Consensus         2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~-~~~~Ps~l~~~~~~~----~LY~~~e~~~~~g~v~~~~i~~~~---   73 (345)
T PF10282_consen    2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVA-EGENPSWLAVSPDGR----RLYVVNEGSGDSGGVSSYRIDPDT---   73 (345)
T ss_dssp             EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEE-ESSSECCEEE-TTSS----EEEEEETTSSTTTEEEEEEEETTT---
T ss_pred             EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeec-CCCCCceEEEEeCCC----EEEEEEccccCCCCEEEEEECCCc---
Confidence            4556666    57888865  2 3322  2222 223345677777543    4555544    6799999987531   


Q ss_pred             CccccceeeeeeccccceEEEEEeCCCCEEEEeeC-CCcEEEEecCCCCCCCccceeeeccCCCcccccccccccccccc
Q 036314          105 HPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSW-DCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLV  183 (347)
Q Consensus       105 ~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~-Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (347)
                        ...+.+............+++++++++|+++.. +|+|.++++................+.    .+.    ..+.-.
T Consensus        74 --g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~----g~~----~~rq~~  143 (345)
T PF10282_consen   74 --GTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGS----GPN----PDRQEG  143 (345)
T ss_dssp             --TEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEE----ESS----TTTTSS
T ss_pred             --ceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCC----CCc----cccccc
Confidence              111222333322333446889999999998875 899999998764221111100000000    000    000111


Q ss_pred             CCccceEEEEe-CCCCeEEEEec-CCcEEEEECCCCc--eee----eeeeCeeeEEEEeeCCCCcEEEEecCCCcEEEEe
Q 036314          184 GHTQCVSSVVW-PQQETIYSASW-DHSVRTWDVEMGK--DLS----DIFCGKALNCIDIGGEGSALIAAGGSDPILRIWD  255 (347)
Q Consensus       184 ~h~~~v~~~~~-~~~~~l~s~s~-dg~v~vwd~~~~~--~~~----~~~~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd  255 (347)
                      .|   ..++.+ |++++++.... ...|.+|++....  ...    .+..+.....+.|++++..+.++.-.++.|.+|+
T Consensus       144 ~h---~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~  220 (345)
T PF10282_consen  144 PH---PHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFD  220 (345)
T ss_dssp             TC---EEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEE
T ss_pred             cc---ceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEe
Confidence            12   344555 67787765532 3469999986654  211    1223456778999888777778888899999999


Q ss_pred             CCCC-CCCCCeEEecC------CCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCC--Ccc--ceeecCCCCeEEEEeec
Q 036314          256 PRKP-GTSAPVFQFSS------HNSWISACKWHNKSWFHLISASYDGKVMLWDLRT--AWP--LSVIDSHKDKVLCADWW  324 (347)
Q Consensus       256 ~~~~-~~~~~~~~~~~------h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~--~~~--~~~~~~h~~~v~~~~~~  324 (347)
                      +... +....+..+..      .......++++|++.++.++-..+.+|-+|+++.  +..  +..+.......+.+.++
T Consensus       221 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s  300 (345)
T PF10282_consen  221 YDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFS  300 (345)
T ss_dssp             EETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-
T ss_pred             ecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEe
Confidence            8722 11112222221      1125778999999988777777889999999943  322  22332223347889997


Q ss_pred             C-CCEEEEcc-CCceEEEeec
Q 036314          325 R-GDSVISGG-VDSKLCVSSG  343 (347)
Q Consensus       325 ~-~~~l~s~s-~D~~v~vw~~  343 (347)
                      + |++|+.+. .+++|.+++-
T Consensus       301 ~~g~~l~Va~~~s~~v~vf~~  321 (345)
T PF10282_consen  301 PDGRYLYVANQDSNTVSVFDI  321 (345)
T ss_dssp             TTSSEEEEEETTTTEEEEEEE
T ss_pred             CCCCEEEEEecCCCeEEEEEE
Confidence            4 77766554 6788988864

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.13  E-value=3.5e-08  Score=88.82  Aligned_cols=193  Identities=12%  Similarity=0.105  Sum_probs=123.4

Q ss_pred             EEEEccCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceee
Q 036314           82 TVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIK  161 (347)
Q Consensus        82 ~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~  161 (347)
                      .+++-..+++|.+.|..+.+         .+..+......-..+.|++||++++..+.||.|.++|+.+.+.        
T Consensus         8 ~~V~~~~~~~v~viD~~t~~---------~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~--------   70 (369)
T PF02239_consen    8 FYVVERGSGSVAVIDGATNK---------VVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKV--------   70 (369)
T ss_dssp             EEEEEGGGTEEEEEETTT-S---------EEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSE--------
T ss_pred             EEEEecCCCEEEEEECCCCe---------EEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccE--------
Confidence            45677888999999987654         3445554444334567999999999999999999999986532        


Q ss_pred             eccCCCccccccccccccccccCCccceEEEEe-CCCCeEEEE-ecCCcEEEEECCCCceeeeeeeCe--------eeEE
Q 036314          162 KRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW-PQQETIYSA-SWDHSVRTWDVEMGKDLSDIFCGK--------ALNC  231 (347)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~l~s~-s~dg~v~vwd~~~~~~~~~~~~~~--------~~~~  231 (347)
                                       +.++.... ...++++ +++++++.+ ..++.+.++|.++.+.++.+....        .+..
T Consensus        71 -----------------v~~i~~G~-~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~a  132 (369)
T PF02239_consen   71 -----------------VATIKVGG-NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAA  132 (369)
T ss_dssp             -----------------EEEEE-SS-EEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEE
T ss_pred             -----------------EEEEecCC-CcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCcee
Confidence                             22222222 2345665 578887655 568999999999998888775432        2334


Q ss_pred             EEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceee
Q 036314          232 IDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVI  311 (347)
Q Consensus       232 ~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~  311 (347)
                      +..++....++++--+.+.|.+.|...... . ....-..........|+|++++++++...+..|-++|.++++.+..+
T Consensus       133 Iv~s~~~~~fVv~lkd~~~I~vVdy~d~~~-~-~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i  210 (369)
T PF02239_consen  133 IVASPGRPEFVVNLKDTGEIWVVDYSDPKN-L-KVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALI  210 (369)
T ss_dssp             EEE-SSSSEEEEEETTTTEEEEEETTTSSC-E-EEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEE
T ss_pred             EEecCCCCEEEEEEccCCeEEEEEeccccc-c-ceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEe
Confidence            444455554666666668888888765422 1 22222344566788999999887787778889999999987665544

...

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.12  E-value=3.5e-10  Score=104.02  Aligned_cols=240  Identities=20%  Similarity=0.298  Sum_probs=160.2

Q ss_pred             CceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeeeeccccc--eEEEEEeCCC---CEEEEeeC
Q 036314           65 GAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKAS--VHSIAAETSG---NMVCSGSW  139 (347)
Q Consensus        65 ~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~--V~~v~~s~~~---~~l~sgs~  139 (347)
                      +.+.++.+.|.+.    -+|.++.-| +.+-|+...     ..+++-+.    |..+  |..+.|++..   .++++-+.
T Consensus        25 ~~~~a~si~p~gr----di~lAsr~g-l~i~dld~p-----~~ppr~l~----h~tpw~vad~qws~h~a~~~wiVsts~   90 (1081)
T KOG0309|consen   25 GGFNAVSINPSGR----DIVLASRQG-LYIIDLDDP-----FTPPRWLH----HITPWQVADVQWSPHPAKPYWIVSTSN   90 (1081)
T ss_pred             Ccccceeeccccc----hhhhhhhcC-eEEEeccCC-----CCCceeee----ccCcchhcceecccCCCCceeEEecCc
Confidence            3467777777543    256666655 334455421     12222222    3222  4455665543   24555444


Q ss_pred             CCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEeCC--CCeEEEEecCCcEEEEECCCC
Q 036314          140 DCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWPQ--QETIYSASWDHSVRTWDVEMG  217 (347)
Q Consensus       140 Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~l~s~s~dg~v~vwd~~~~  217 (347)
                      ..+ .+|++.....                      ...-..+-+|+.+|..+-|..  ...+++++.|-.+..||+++.
T Consensus        91 qka-iiwnlA~ss~----------------------~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp  147 (1081)
T KOG0309|consen   91 QKA-IIWNLAKSSS----------------------NAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSP  147 (1081)
T ss_pred             chh-hhhhhhcCCc----------------------cceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCC
Confidence            444 4788764321                      111235668999999998843  346899999999999999986


Q ss_pred             ceeeeee--eCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCC
Q 036314          218 KDLSDIF--CGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDG  295 (347)
Q Consensus       218 ~~~~~~~--~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~  295 (347)
                      .......  -......+.+...+++.+|+ +..+.|++||++.+.  .++..+.+|...|..++|+.-....+.+++.|+
T Consensus       148 ~~p~ys~~~w~s~asqVkwnyk~p~vlas-shg~~i~vwd~r~gs--~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~  224 (1081)
T KOG0309|consen  148 HRPFYSTSSWRSAASQVKWNYKDPNVLAS-SHGNDIFVWDLRKGS--TPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDG  224 (1081)
T ss_pred             CcceeeeecccccCceeeecccCcchhhh-ccCCceEEEeccCCC--cceEEecccceeeehHHHhhhhhhhhcccCCCC
Confidence            5432221  12344567777667766654 557889999999764  458889999999999999877666799999999


Q ss_pred             cEEEEEcCCCc-------------------------------------------------------cceeecCCCCeEEE
Q 036314          296 KVMLWDLRTAW-------------------------------------------------------PLSVIDSHKDKVLC  320 (347)
Q Consensus       296 ~i~lwd~~~~~-------------------------------------------------------~~~~~~~h~~~v~~  320 (347)
                      +|+.||..+..                                                       ++.+|.||.+.|..
T Consensus       225 tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~e  304 (1081)
T KOG0309|consen  225 TVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLE  304 (1081)
T ss_pred             ceeeecccccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHH
Confidence            99999865321                                                       35667899999988


Q ss_pred             Eeec-----CC------CEEEEccCCceEEEeecc
Q 036314          321 ADWW-----RG------DSVISGGVDSKLCVSSGV  344 (347)
Q Consensus       321 ~~~~-----~~------~~l~s~s~D~~v~vw~~~  344 (347)
                      ..|.     +|      -+|+|=|.|.++++|..-
T Consensus       305 FlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~  339 (1081)
T KOG0309|consen  305 FLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPID  339 (1081)
T ss_pred             HhhhhcccccCCCCccceeEEEeecCCceEeeecc
Confidence            8883     11      259999999999999864

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.12  E-value=8.8e-10  Score=98.46  Aligned_cols=283  Identities=11%  Similarity=0.165  Sum_probs=165.6

Q ss_pred             CCCcCCceeecc-CCCCCEEEEEecCCeEEEEcCC--------CeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCC
Q 036314           20 PSLHDDWVSAVD-GSNPGFILTGCYDNLGRVWKAG--------GVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQ   90 (347)
Q Consensus        20 ~~~h~~~v~~~~-~~~~~~l~sg~~d~~i~iw~~~--------~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg   90 (347)
                      ..||...|++++ .++.+.++++|.|.|+++|.+.        ..|..++..|..+|.++.|..+..    .  .+|.||
T Consensus       731 f~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr----~--i~ScD~  804 (1034)
T KOG4190|consen  731 FTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLR----S--IASCDG  804 (1034)
T ss_pred             ccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccc----e--eeeccC
Confidence            568999999988 4577889999999999999652        247788999999999999987432    3  357889


Q ss_pred             cEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEE-EEeeCCCcEEEEecCCCCCCCccceeeeccCCCcc
Q 036314           91 TLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMV-CSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQV  169 (347)
Q Consensus        91 ~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l-~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~  169 (347)
                      -|.+||.--++++.+.... +   -.+-...|.++- +-+...+ +-++...||+++|.+..+...+-.           
T Consensus       805 giHlWDPFigr~Laq~~da-p---k~~a~~~ikcl~-nv~~~iliAgcsaeSTVKl~DaRsce~~~E~k-----------  868 (1034)
T KOG4190|consen  805 GIHLWDPFIGRLLAQMEDA-P---KEGAGGNIKCLE-NVDRHILIAGCSAESTVKLFDARSCEWTCELK-----------  868 (1034)
T ss_pred             cceeecccccchhHhhhcC-c---ccCCCceeEecc-cCcchheeeeccchhhheeeecccccceeeEE-----------
Confidence            9999998766654321100 0   011223344442 2133444 444899999999987543211100           


Q ss_pred             ccccccccccccccCCccceEEEEe-CCCCeEEEEecCCcEEEEECCCCceeeeeeeCeeeEEEEeeCCCCcEEEEecCC
Q 036314          170 EEPQLEGEAISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEGSALIAAGGSD  248 (347)
Q Consensus       170 ~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~d  248 (347)
                               +....+.+.-+++++. +.|+.++.+-.+|.|.+.|.++|+.+..+..-. ..-+.+..+..+.++....|
T Consensus       869 ---------Vcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpme-cdllqlaapsdq~L~~sald  938 (1034)
T KOG4190|consen  869 ---------VCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPME-CDLLQLAAPSDQALAQSALD  938 (1034)
T ss_pred             ---------eccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCccc-chhhhhcCchhHHHHhhccc
Confidence                     1111334455777776 567889999899999999999999887664221 11122222333455666667


Q ss_pred             CcEEE-EeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCC-cc---ceee--cCCCCeEEEE
Q 036314          249 PILRI-WDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTA-WP---LSVI--DSHKDKVLCA  321 (347)
Q Consensus       249 ~~i~i-wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~-~~---~~~~--~~h~~~v~~~  321 (347)
                      .++.+ |..-.+   ....+.........  -...-|+ .|+++.....+.+|--... ..   +..+  ....+..+++
T Consensus       939 HslaVnWhaldg---imh~q~kpppepah--flqsvgp-SLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTal 1012 (1034)
T KOG4190|consen  939 HSLAVNWHALDG---IMHLQDKPPPEPAH--FLQSVGP-SLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTAL 1012 (1034)
T ss_pred             ceeEeeehhcCC---eeeeccCCCCcchh--hhhccCc-eeEEeccCcEEEEEecchhhhhhhhhccccccccCCcccee
Confidence            77777 753211   11111111111000  0001232 4888888888888842211 11   1111  1234455555


Q ss_pred             eecCC-CEEEEccCCceEEE
Q 036314          322 DWWRG-DSVISGGVDSKLCV  340 (347)
Q Consensus       322 ~~~~~-~~l~s~s~D~~v~v  340 (347)
                      +--|- .-+..|+..|.|.+
T Consensus      1013 a~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 1013 APLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred             eeccccchhhccCCCCceee
Confidence            54443 34667777887765

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.11  E-value=1.3e-08  Score=91.41  Aligned_cols=236  Identities=19%  Similarity=0.273  Sum_probs=146.2

Q ss_pred             ccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeeeecccc--ceEEEEEeCCCCEEEEeeC
Q 036314           62 GHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKA--SVHSIAAETSGNMVCSGSW  139 (347)
Q Consensus        62 ~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~--~V~~v~~s~~~~~l~sgs~  139 (347)
                      +|...-+.|..+|++.   ..||||-.--.|++||+..-.+           .|.-|.+  .|.-.-.+.|-.-++---.
T Consensus        49 e~p~ast~ik~s~DGq---Y~lAtG~YKP~ikvydlanLSL-----------KFERhlDae~V~feiLsDD~SK~v~L~~  114 (703)
T KOG2321|consen   49 EMPTASTRIKVSPDGQ---YLLATGTYKPQIKVYDLANLSL-----------KFERHLDAEVVDFEILSDDYSKSVFLQN  114 (703)
T ss_pred             CCccccceeEecCCCc---EEEEecccCCceEEEEccccee-----------eeeecccccceeEEEeccchhhheEeec
Confidence            3556667888888654   3789999999999999875321           2344432  2333334555433333345


Q ss_pred             CCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEeC-CCCeEEEEecCCcEEEEECCCCc
Q 036314          140 DCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWP-QQETIYSASWDHSVRTWDVEMGK  218 (347)
Q Consensus       140 Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~l~s~s~dg~v~vwd~~~~~  218 (347)
                      |.+|-+-...     +.+..                   ++..    ..-+.+.++ ..--|++++....|.-++++.|.
T Consensus       115 DR~IefHak~-----G~hy~-------------------~RIP----~~GRDm~y~~~scDly~~gsg~evYRlNLEqGr  166 (703)
T KOG2321|consen  115 DRTIEFHAKY-----GRHYR-------------------TRIP----KFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGR  166 (703)
T ss_pred             Cceeeehhhc-----Ceeee-------------------eecC----cCCccccccCCCccEEEeecCcceEEEEccccc
Confidence            5555543110     00000                   0000    011223321 22235566666678888999998


Q ss_pred             eeeeeeeC-eeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCe---EEecCCCC-----CeeEEEeCCCCCeEEE
Q 036314          219 DLSDIFCG-KALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPV---FQFSSHNS-----WISACKWHNKSWFHLI  289 (347)
Q Consensus       219 ~~~~~~~~-~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~---~~~~~h~~-----~v~~v~~s~~~~~~l~  289 (347)
                      -+..+... ..++++.+.+..+ +|++|+.+|.|.+||+|.......+   ..+..|..     .|+++.|+.+| ..++
T Consensus       167 fL~P~~~~~~~lN~v~in~~hg-Lla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~g-L~~a  244 (703)
T KOG2321|consen  167 FLNPFETDSGELNVVSINEEHG-LLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDG-LHVA  244 (703)
T ss_pred             cccccccccccceeeeecCccc-eEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCc-eeEE
Confidence            77776544 5788888876654 8899999999999999864322111   11122333     38999999876 6799


Q ss_pred             EEeCCCcEEEEEcCCCccceeecCCC--CeEEEEeecC---CCEEEEccCCceEEEeec
Q 036314          290 SASYDGKVMLWDLRTAWPLSVIDSHK--DKVLCADWWR---GDSVISGGVDSKLCVSSG  343 (347)
Q Consensus       290 s~s~D~~i~lwd~~~~~~~~~~~~h~--~~v~~~~~~~---~~~l~s~s~D~~v~vw~~  343 (347)
                      .|..+|.|.|||++..+++.. ..|.  -++..+.|-+   ++.++|. .-..++||+-
T Consensus       245 VGts~G~v~iyDLRa~~pl~~-kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~  301 (703)
T KOG2321|consen  245 VGTSTGSVLIYDLRASKPLLV-KDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDE  301 (703)
T ss_pred             eeccCCcEEEEEcccCCceee-cccCCccceeeecccccCCCceEEec-chHHhhhccc
Confidence            999999999999999877654 3454  4667888853   2356653 3567888873

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.11  E-value=3.4e-09  Score=95.36  Aligned_cols=198  Identities=15%  Similarity=0.091  Sum_probs=132.5

Q ss_pred             eCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccC-----CccceEEEEe-----CCC
Q 036314          128 ETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVG-----HTQCVSSVVW-----PQQ  197 (347)
Q Consensus       128 s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----h~~~v~~~~~-----~~~  197 (347)
                      +|-+.++|....||.+|+|+..............           ...+++..+.-+     -.....++.+     .+.
T Consensus         2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~-----------~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t   70 (541)
T KOG4547|consen    2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIA-----------SLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDT   70 (541)
T ss_pred             CchhheEeecCCCCeEEEEEccCceeeeeeccch-----------hccCcceeEEEEEEeccchHHHHhHHHHhhccCCc
Confidence            3446789999999999999987653221111000           001111110000     0000111111     123


Q ss_pred             CeEEEEecCCcEEEEECCCCceeeeeee---CeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCC
Q 036314          198 ETIYSASWDHSVRTWDVEMGKDLSDIFC---GKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSW  274 (347)
Q Consensus       198 ~~l~s~s~dg~v~vwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~  274 (347)
                      ..++-|...|.|.+|++..++....+..   ...+.++..+ .+...|-+++.|..+..|+...   ......+......
T Consensus        71 ~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~-~~~~ciyS~~ad~~v~~~~~~~---~~~~~~~~~~~~~  146 (541)
T KOG4547|consen   71 SMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDA-QRLGCIYSVGADLKVVYILEKE---KVIIRIWKEQKPL  146 (541)
T ss_pred             eEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecc-cccCceEecCCceeEEEEeccc---ceeeeeeccCCCc
Confidence            3577888899999999998887666652   2356666653 4455788999999999999764   2235566777778


Q ss_pred             eeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecCCCCeEEEEeec-C-----CCE-EEEccCCceEEEeec
Q 036314          275 ISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKVLCADWW-R-----GDS-VISGGVDSKLCVSSG  343 (347)
Q Consensus       275 v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h~~~v~~~~~~-~-----~~~-l~s~s~D~~v~vw~~  343 (347)
                      +.++..+||+. .|++|+  ++|++||+++.+.+.+|.||.++|+++.|- .     |.+ |.+...+.-+.+|-.
T Consensus       147 ~~sl~is~D~~-~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v  219 (541)
T KOG4547|consen  147 VSSLCISPDGK-ILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVV  219 (541)
T ss_pred             cceEEEcCCCC-EEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEE
Confidence            89999999975 577776  489999999999999999999999999994 2     565 555566777777743

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.11  E-value=1.2e-09  Score=109.19  Aligned_cols=246  Identities=17%  Similarity=0.247  Sum_probs=155.1

Q ss_pred             EEEEEecCCeEEEEcCCCeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeeee
Q 036314           37 FILTGCYDNLGRVWKAGGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILR  116 (347)
Q Consensus        37 ~l~sg~~d~~i~iw~~~~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~  116 (347)
                      .+.....+++.--|..++.- ..+..|-..|.++.-+|...    ..+||+.||.|++|....++.      ..+.++. 
T Consensus      2182 ~~~~~n~~~~~~tq~~~~~~-~~~k~~v~~v~r~~sHp~~~----~Yltgs~dgsv~~~~w~~~~~------v~~~rt~- 2249 (2439)
T KOG1064|consen 2182 RFTPSNLPWLGSTQTSRGAS-VMIKHPVENVRRMTSHPSDP----YYLTGSQDGSVRMFEWGHGQQ------VVCFRTA- 2249 (2439)
T ss_pred             cCCcccCCccccceecccce-eEeecccCceeeecCCCCCc----eEEecCCCceEEEEeccCCCe------EEEeecc-
Confidence            33444445555555544322 23444556677777777443    568999999999999765431      1122222 


Q ss_pred             ccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEeCC
Q 036314          117 GHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWPQ  196 (347)
Q Consensus       117 ~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~  196 (347)
                      |. +.|+.+.|+.+|+.+..+..||.+.+|.+..                          ......+.|+.....+.|-.
T Consensus      2250 g~-s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~p--------------------------k~~~s~qchnk~~~Df~Fi~ 2302 (2439)
T KOG1064|consen 2250 GN-SRVTRSRFNHQGNKFGIVDGDGDLSLWQASP--------------------------KPYTSWQCHNKALSDFRFIG 2302 (2439)
T ss_pred             Cc-chhhhhhhcccCCceeeeccCCceeecccCC--------------------------cceeccccCCccccceeeee
Confidence            33 7788999999999999999999999997652                          12334566777777666532


Q ss_pred             CCeEEEE---ecCCcEEEEECCCCce--eeeeeeCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCC
Q 036314          197 QETIYSA---SWDHSVRTWDVEMGKD--LSDIFCGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSH  271 (347)
Q Consensus       197 ~~~l~s~---s~dg~v~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h  271 (347)
                       ..++++   +.++.+.+||..-.-.  ....-+....+++++.|. .+++++|+.+|.|++||++...   .+.++.. 
T Consensus      2303 -s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~-~qllisggr~G~v~l~D~rqrq---l~h~~~~- 2376 (2439)
T KOG1064|consen 2303 -SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPK-HQLLISGGRKGEVCLFDIRQRQ---LRHTFQA- 2376 (2439)
T ss_pred             -hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCc-ceEEEecCCcCcEEEeehHHHH---HHHHhhh-
Confidence             233333   5667899999754321  111223456788888654 5688999999999999998521   2223322 


Q ss_pred             CCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeec---CCCCe--EEEEee--cCCCEEEEccCCce
Q 036314          272 NSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVID---SHKDK--VLCADW--WRGDSVISGGVDSK  337 (347)
Q Consensus       272 ~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~---~h~~~--v~~~~~--~~~~~l~s~s~D~~  337 (347)
                              +.  .+.++++|+..|.|+||++.....++++.   .|.+-  +.....  -..++|.+|+.|++
T Consensus      2377 --------~~--~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e~ak~gfFr~~g~Q~~v~~~nrifsCgad~~ 2439 (2439)
T KOG1064|consen 2377 --------LD--TREYFVTGSSEGNIKIWRLSEFGLLHTFPSEHAKQGFFRNIGMQINVGQCNRIFSCGADGT 2439 (2439)
T ss_pred             --------hh--hhheeeccCcccceEEEEccccchhhcCchhhcccchhhhcCceeeeccCceEEEecCCCC
Confidence                    22  23469999999999999998876665542   12211  111111  13557888888874

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.11  E-value=1e-09  Score=97.56  Aligned_cols=147  Identities=21%  Similarity=0.257  Sum_probs=105.5

Q ss_pred             CCCeEEEEecCCcEEEEECCCCceeeeee------eCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCC--C------
Q 036314          196 QQETIYSASWDHSVRTWDVEMGKDLSDIF------CGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPG--T------  261 (347)
Q Consensus       196 ~~~~l~s~s~dg~v~vwd~~~~~~~~~~~------~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~--~------  261 (347)
                      .+-.++.+=.-|.+.+.|... +.+..+.      ....++|+.|-+.+..+++++..+|.+++||.....  .      
T Consensus       184 ~g~dllIGf~tGqvq~idp~~-~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~  262 (636)
T KOG2394|consen  184 KGLDLLIGFTTGQVQLIDPIN-FEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQA  262 (636)
T ss_pred             CCcceEEeeccCceEEecchh-hHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccc
Confidence            344466666677888887654 2232221      234688999988888888888999999999753210  0      


Q ss_pred             -----------------CCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecCCCCeEEEEeec
Q 036314          262 -----------------SAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKVLCADWW  324 (347)
Q Consensus       262 -----------------~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h~~~v~~~~~~  324 (347)
                                       -.|+..+.--.+.|...+|+||+. +||+.|.||.+||+|..+.+.+..+..=-+..+||.||
T Consensus       263 ~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~-~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWS  341 (636)
T KOG2394|consen  263 LKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGK-YLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWS  341 (636)
T ss_pred             cCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCc-eEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEc
Confidence                             011222323344688899999885 69999999999999999876665543333678999998


Q ss_pred             C-CCEEEEccCCceEEEeecc
Q 036314          325 R-GDSVISGGVDSKLCVSSGV  344 (347)
Q Consensus       325 ~-~~~l~s~s~D~~v~vw~~~  344 (347)
                      | |++|++|+.|.-|.||+..
T Consensus       342 PDGKyIvtGGEDDLVtVwSf~  362 (636)
T KOG2394|consen  342 PDGKYIVTGGEDDLVTVWSFE  362 (636)
T ss_pred             CCccEEEecCCcceEEEEEec
Confidence            5 8899999999999999864

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.11  E-value=2.3e-08  Score=82.91  Aligned_cols=132  Identities=17%  Similarity=0.065  Sum_probs=93.7

Q ss_pred             EEeC-CCCeEEEEecCCcEEEEECCCCceee--eeeeC-eeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEE
Q 036314          192 VVWP-QQETIYSASWDHSVRTWDVEMGKDLS--DIFCG-KALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQ  267 (347)
Q Consensus       192 ~~~~-~~~~l~s~s~dg~v~vwd~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~  267 (347)
                      +-|. .+..++++-.+|.+.+-+.......+  .+..+ .+.....|+..+.+++.+|++|+.+..||+|.++.. ....
T Consensus       127 lD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~-i~~n  205 (339)
T KOG0280|consen  127 LDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTF-IWHN  205 (339)
T ss_pred             EEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcce-eeec
Confidence            4453 45568888888888854433322211  23222 355667777777789999999999999999954421 1222


Q ss_pred             ecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCC-CccceeecCCCCeEEEEeecC
Q 036314          268 FSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRT-AWPLSVIDSHKDKVLCADWWR  325 (347)
Q Consensus       268 ~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~-~~~~~~~~~h~~~v~~~~~~~  325 (347)
                      -.-|...|.++.-+|..++.++||++|..|++||.|. ++++..-. -.+.||.+.++|
T Consensus       206 ~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p  263 (339)
T KOG0280|consen  206 SKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK-VGGGVWRIKHHP  263 (339)
T ss_pred             ceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc-cccceEEEEecc
Confidence            4568899999999998888999999999999999995 56665422 247889888876

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.08  E-value=6.2e-09  Score=86.93  Aligned_cols=282  Identities=19%  Similarity=0.282  Sum_probs=160.1

Q ss_pred             CCcCCceeeccCC-CCCEEEEEecCCeEEEEcCC---C---eEEEEeeccCC------------ceEEEEEeecCCCceE
Q 036314           21 SLHDDWVSAVDGS-NPGFILTGCYDNLGRVWKAG---G---VCTHILEGHCG------------AVSSVNIIKSDGLKYV   81 (347)
Q Consensus        21 ~~h~~~v~~~~~~-~~~~l~sg~~d~~i~iw~~~---~---~~~~~l~~h~~------------~V~~v~~~~~~~~~~~   81 (347)
                      ....+-|++|.|. .|.||+||...|.|-++...   |   +....|++|+.            .|+.+.|..+.+. .+
T Consensus        23 ~tead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r-~h  101 (460)
T COG5170          23 STEADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGR-NH  101 (460)
T ss_pred             ccccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCc-ce
Confidence            3456889999998 56799999888999999642   2   12234667753            5888888876553 33


Q ss_pred             EEEEccCCCcEEEEecccccc--ccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccce
Q 036314           82 TVATASKDQTLRLWKFDAEEL--VNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVS  159 (347)
Q Consensus        82 ~l~s~s~Dg~v~~wd~~~~~~--~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~  159 (347)
                       ++..+.|.+|++|.+....+  +.+..-...+ + .+-.+++++.               ..+++=.+...   ...  
T Consensus       102 -FLlstNdktiKlWKiyeknlk~va~nnls~~~-~-~~~~g~~~s~---------------~~l~lprls~h---d~i--  158 (460)
T COG5170         102 -FLLSTNDKTIKLWKIYEKNLKVVAENNLSDSF-H-SPMGGPLTST---------------KELLLPRLSEH---DEI--  158 (460)
T ss_pred             -EEEecCCceeeeeeeecccchhhhcccccccc-c-cccCCCcCCH---------------HHhhccccccc---ceE--
Confidence             44568899999999864321  1000000000 0 0001111111               00111000000   000  


Q ss_pred             eeeccCCCccccccccccccccc-cCCccceEEEEeCC-CCeEEEEecCCcEEEEECCCCceee---eeeeC------ee
Q 036314          160 IKKRKGNNQVEEPQLEGEAISTL-VGHTQCVSSVVWPQ-QETIYSASWDHSVRTWDVEMGKDLS---DIFCG------KA  228 (347)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~-~~~l~s~s~dg~v~vwd~~~~~~~~---~~~~~------~~  228 (347)
                                    ...++.+.+ ..|.-.+.++.+.. .+.++| +.|=.|.+|++.-...-.   .+...      ..
T Consensus       159 --------------iaa~p~rvyaNaH~yhiNSiS~NsD~et~lS-aDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteV  223 (460)
T COG5170         159 --------------IAAKPCRVYANAHPYHINSISFNSDKETLLS-ADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEV  223 (460)
T ss_pred             --------------EEeccceeccccceeEeeeeeecCchheeee-ccceeeeeccccccCCceEEEeccCccHHHHHHH
Confidence                          000111122 34666788888854 445554 567789999986433222   22211      13


Q ss_pred             eEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCC---CCCeE----------EecCCCCCeeEEEeCCCCCeEEEEEeCCC
Q 036314          229 LNCIDIGGEGSALIAAGGSDPILRIWDPRKPGT---SAPVF----------QFSSHNSWISACKWHNKSWFHLISASYDG  295 (347)
Q Consensus       229 ~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~---~~~~~----------~~~~h~~~v~~v~~s~~~~~~l~s~s~D~  295 (347)
                      ++...|+|...+++.-.+..|.|++-|+|+..-   +..++          -+.+-.+.|..+.|++.|++ +++-+. -
T Consensus       224 ItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngry-IlsRdy-l  301 (460)
T COG5170         224 ITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRY-ILSRDY-L  301 (460)
T ss_pred             HhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcE-EEEecc-c
Confidence            455667777777777778899999999984211   00111          11223346788999999864 665554 5


Q ss_pred             cEEEEEcCCC-ccceeecC------------CCCeEE---EEeec-CCCEEEEccCCceEEEeec
Q 036314          296 KVMLWDLRTA-WPLSVIDS------------HKDKVL---CADWW-RGDSVISGGVDSKLCVSSG  343 (347)
Q Consensus       296 ~i~lwd~~~~-~~~~~~~~------------h~~~v~---~~~~~-~~~~l~s~s~D~~v~vw~~  343 (347)
                      +++|||++.. .+++++..            ..+.|.   .+.|+ +++.+.+||....--++-+
T Consensus       302 tvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~  366 (460)
T COG5170         302 TVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPT  366 (460)
T ss_pred             eEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeecc
Confidence            8999999853 45665532            234453   45666 4567888888877766653

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.08  E-value=4.8e-08  Score=90.25  Aligned_cols=197  Identities=11%  Similarity=0.075  Sum_probs=111.3

Q ss_pred             CCCcCCceeeccCC-CCCEEEEEecC---CeEEEEcCCCeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCC--cEE
Q 036314           20 PSLHDDWVSAVDGS-NPGFILTGCYD---NLGRVWKAGGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQ--TLR   93 (347)
Q Consensus        20 ~~~h~~~v~~~~~~-~~~~l~sg~~d---~~i~iw~~~~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg--~v~   93 (347)
                      ...+...+...+++ ++++|+.++.+   .+|++||+.+.....+..+.+.+.++.|+|++.   ..+++.+.++  .|.
T Consensus       185 l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~---~l~~~~~~~~~~~i~  261 (417)
T TIGR02800       185 ITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGS---KLAVSLSKDGNPDIY  261 (417)
T ss_pred             eecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCC---EEEEEECCCCCccEE
Confidence            33455667777888 45678776654   479999976433334455666677889998543   2344555555  577


Q ss_pred             EEeccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEee-CCCc--EEEEecCCCCCCCccceeeeccCCCccc
Q 036314           94 LWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGS-WDCT--ISLWRTNDSDAAGNQVSIKKRKGNNQVE  170 (347)
Q Consensus        94 ~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs-~Dg~--I~iwd~~~~~~~~~~~~~~~~~~~~~~~  170 (347)
                      +|++.+++.          ..+..|........|++||+.|+..+ .++.  |.++++....                  
T Consensus       262 ~~d~~~~~~----------~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~------------------  313 (417)
T TIGR02800       262 VMDLDGKQL----------TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE------------------  313 (417)
T ss_pred             EEECCCCCE----------EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC------------------
Confidence            788765431          22333444455678999998876554 3444  5555554321                  


Q ss_pred             cccccccccccccCCccceEEEEe-CCCCeEEEEecCC---cEEEEECCCCceeeeeeeCeeeEEEEeeCCCCcEEEEec
Q 036314          171 EPQLEGEAISTLVGHTQCVSSVVW-PQQETIYSASWDH---SVRTWDVEMGKDLSDIFCGKALNCIDIGGEGSALIAAGG  246 (347)
Q Consensus       171 ~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~l~s~s~dg---~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~  246 (347)
                              ...+..+...+....| ++++.++.++.++   .|.+||+.++.. ..+..........+++++..++++..
T Consensus       314 --------~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~p~~spdg~~l~~~~~  384 (417)
T TIGR02800       314 --------VRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE-RVLTDTGLDESPSFAPNGRMILYATT  384 (417)
T ss_pred             --------EEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe-EEccCCCCCCCceECCCCCEEEEEEe
Confidence                    0111112233444555 5778887777765   788899877543 22222212233456666554444443


Q ss_pred             CCC--cEEEEeC
Q 036314          247 SDP--ILRIWDP  256 (347)
Q Consensus       247 ~d~--~i~iwd~  256 (347)
                      .++  .+++.+.
T Consensus       385 ~~~~~~l~~~~~  396 (417)
T TIGR02800       385 RGGRGVLGLVST  396 (417)
T ss_pred             CCCcEEEEEEEC
Confidence            332  3445553

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.07  E-value=8.9e-10  Score=101.44  Aligned_cols=234  Identities=19%  Similarity=0.316  Sum_probs=148.8

Q ss_pred             CCEEEEEecCCeEEEEcCC----CeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccc
Q 036314           35 PGFILTGCYDNLGRVWKAG----GVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIR  110 (347)
Q Consensus        35 ~~~l~sg~~d~~i~iw~~~----~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~  110 (347)
                      +..+|+.+. ....+|++.    ......+.||...|+.+.|.+...   ..+++++.|-.|..||+.+..        .
T Consensus        82 ~~wiVsts~-qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~p---dVlatcsvdt~vh~wd~rSp~--------~  149 (1081)
T KOG0309|consen   82 PYWIVSTSN-QKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHP---DVLATCSVDTYVHAWDMRSPH--------R  149 (1081)
T ss_pred             ceeEEecCc-chhhhhhhhcCCccceEEEEecCccceeccccCCCCC---cceeeccccccceeeeccCCC--------c
Confidence            345665543 455689863    234567889999999999987544   479999999999999987532        2


Q ss_pred             eeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceE
Q 036314          111 SFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVS  190 (347)
Q Consensus       111 ~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~  190 (347)
                      ++..+..-..+...|+|+-....++..+....|++||.+.+.                        +.+..+++|...|+
T Consensus       150 p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs------------------------~pl~s~K~~vs~vn  205 (1081)
T KOG0309|consen  150 PFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGS------------------------TPLCSLKGHVSSVN  205 (1081)
T ss_pred             ceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCC------------------------cceEEecccceeee
Confidence            333343334445678887655555556777889999987642                        34567778888888


Q ss_pred             EEEeCC--CCeEEEEecCCcEEEEECCCCce--eeeeeeCeeeEEEEeeCCCCc-EEEEecCCCcEEEEeCCCC------
Q 036314          191 SVVWPQ--QETIYSASWDHSVRTWDVEMGKD--LSDIFCGKALNCIDIGGEGSA-LIAAGGSDPILRIWDPRKP------  259 (347)
Q Consensus       191 ~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~la~~~~d~~i~iwd~~~~------  259 (347)
                      ++.|..  ...+.+.+.|++|+.||......  -+.+....++.--.+.|-+.. .+.---.++.+.+++.+..      
T Consensus       206 ~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~  285 (1081)
T KOG0309|consen  206 SIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNV  285 (1081)
T ss_pred             hHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhcc
Confidence            888743  34588999999999999854321  111111222221111111111 1111111224444443321      


Q ss_pred             -CCCCCeEEecCCCCCeeEEEeCCCC---------CeEEEEEeCCCcEEEEEcCC
Q 036314          260 -GTSAPVFQFSSHNSWISACKWHNKS---------WFHLISASYDGKVMLWDLRT  304 (347)
Q Consensus       260 -~~~~~~~~~~~h~~~v~~v~~s~~~---------~~~l~s~s~D~~i~lwd~~~  304 (347)
                       ....++.+|.||.+.|....|-..+         .++|+|=|.|.++|+|.+..
T Consensus       286 ~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~  340 (1081)
T KOG0309|consen  286 FDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS  340 (1081)
T ss_pred             ccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence             1245789999999988666554322         36799999999999998864

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.04  E-value=2.6e-07  Score=85.15  Aligned_cols=242  Identities=11%  Similarity=0.037  Sum_probs=128.8

Q ss_pred             eEEEEcCCCeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCc--EEEEeccccccccCccccceeeeeeccccceE
Q 036314           46 LGRVWKAGGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQT--LRLWKFDAEELVNHPKKIRSFKILRGHKASVH  123 (347)
Q Consensus        46 ~i~iw~~~~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~--v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~  123 (347)
                      .+.+.|..|...+.+........+-+|+|++.. ..++++...+|.  |.+.++.+++.       +.+.   ...+...
T Consensus       166 ~l~~~d~dG~~~~~lt~~~~~~~sP~wSPDG~~-~~~~y~S~~~g~~~I~~~~l~~g~~-------~~lt---~~~g~~~  234 (428)
T PRK01029        166 ELWSVDYDGQNLRPLTQEHSLSITPTWMHIGSG-FPYLYVSYKLGVPKIFLGSLENPAG-------KKIL---ALQGNQL  234 (428)
T ss_pred             eEEEEcCCCCCceEcccCCCCcccceEccCCCc-eEEEEEEccCCCceEEEEECCCCCc-------eEee---cCCCCcc
Confidence            455556666555556655566677899996542 123334555554  55556655431       1222   2333445


Q ss_pred             EEEEeCCCCEEEEee-CCC----cEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEe-CCC
Q 036314          124 SIAAETSGNMVCSGS-WDC----TISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW-PQQ  197 (347)
Q Consensus       124 ~v~~s~~~~~l~sgs-~Dg----~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~  197 (347)
                      ..+|+|||+.|+-.+ .+|    .+.+|++..+.. +                     ...+...++........| |++
T Consensus       235 ~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~-g---------------------~~~~lt~~~~~~~~~p~wSPDG  292 (428)
T PRK01029        235 MPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAI-G---------------------KPRRLLNEAFGTQGNPSFSPDG  292 (428)
T ss_pred             ceEECCCCCEEEEEECCCCCcceeEEEeecccCCC-C---------------------cceEeecCCCCCcCCeEECCCC
Confidence            678999998776443 233    333455543210 0                     000011111112233456 677


Q ss_pred             CeEEEEe-cCCcEEEEEC--CC-CceeeeeeeC-eeeEEEEeeCCCCcEEEEecCC--CcEEEEeCCCCCCCCCeEEecC
Q 036314          198 ETIYSAS-WDHSVRTWDV--EM-GKDLSDIFCG-KALNCIDIGGEGSALIAAGGSD--PILRIWDPRKPGTSAPVFQFSS  270 (347)
Q Consensus       198 ~~l~s~s-~dg~v~vwd~--~~-~~~~~~~~~~-~~~~~~~~~~~~~~~la~~~~d--~~i~iwd~~~~~~~~~~~~~~~  270 (347)
                      +.|+..+ .+|..++|.+  .. +.....+... .......++|++..++.+...+  ..|.+||+....    ...+..
T Consensus       293 ~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~----~~~Lt~  368 (428)
T PRK01029        293 TRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGR----DYQLTT  368 (428)
T ss_pred             CEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCC----eEEccC
Confidence            8777655 4666666643  22 2222333222 2345667877765554444333  468999986432    233333


Q ss_pred             CCCCeeEEEeCCCCCeEEEEEeC--CCcEEEEEcCCCccceeecCCCCeEEEEeecC
Q 036314          271 HNSWISACKWHNKSWFHLISASY--DGKVMLWDLRTAWPLSVIDSHKDKVLCADWWR  325 (347)
Q Consensus       271 h~~~v~~v~~s~~~~~~l~s~s~--D~~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~  325 (347)
                      ....+....|+||+..++.++..  ...|.++|+..++... +....+.+...+|+|
T Consensus       369 ~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~-Lt~~~g~~~~p~Ws~  424 (428)
T PRK01029        369 SPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRK-IVIGSGEKRFPSWGA  424 (428)
T ss_pred             CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-eecCCCcccCceecC
Confidence            33356778999999765555543  3468888988765433 333345566777864

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=99.04  E-value=6e-09  Score=84.91  Aligned_cols=232  Identities=20%  Similarity=0.255  Sum_probs=134.3

Q ss_pred             EEEEccCCCcEEEEeccccccccCcc---ccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccc
Q 036314           82 TVATASKDQTLRLWKFDAEELVNHPK---KIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQV  158 (347)
Q Consensus        82 ~l~s~s~Dg~v~~wd~~~~~~~~~~~---~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~  158 (347)
                      .|+++-.++.+.....-.+.+....+   ...++..+.-|+.+-.+-+.+-.++.++.+..||.+.+++.+.........
T Consensus        49 ~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i  128 (319)
T KOG4714|consen   49 ILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRI  128 (319)
T ss_pred             eeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhc
Confidence            46666666666555443322211111   112333344455444334445557889999999999999876421000000


Q ss_pred             eeeeccCCCccccccccccccccccCCccceEEEE-eCCCCeEEEE-----ecCCcEEEEECCCCcee-eeeeeCeeeEE
Q 036314          159 SIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVV-WPQQETIYSA-----SWDHSVRTWDVEMGKDL-SDIFCGKALNC  231 (347)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~-~~~~~~l~s~-----s~dg~v~vwd~~~~~~~-~~~~~~~~~~~  231 (347)
                                             -.-|.+- .+.. ...++.+.++     -.-+..+.|+++.-+.. ........+.+
T Consensus       129 -----------------------~~~~~~~-as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~  184 (319)
T KOG4714|consen  129 -----------------------PSIHSGS-ASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTA  184 (319)
T ss_pred             -----------------------ccccccc-cccceeecccEEecCCcceEeeccceeeecccccccccccccccccchh
Confidence                                   0001000 0000 1222333322     11224556665432211 11112234778


Q ss_pred             EEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCcccee-
Q 036314          232 IDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSV-  310 (347)
Q Consensus       232 ~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~-  310 (347)
                      ++-+|...++++.|++||.+.+||.|..  ..+...+..|...++.+-|+|.++..|.++++||.+..||..+ .++.. 
T Consensus       185 l~~hp~qq~~v~cgt~dg~~~l~d~rn~--~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~-~~l~i~  261 (319)
T KOG4714|consen  185 LCSHPAQQHLVCCGTDDGIVGLWDARNV--AMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST-TFLSIS  261 (319)
T ss_pred             hhCCcccccEEEEecCCCeEEEEEcccc--cchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC-ceEEec
Confidence            8888888889999999999999999864  2345677899999999999999999999999999999999874 11110 


Q ss_pred             ---------ecCCCCeEE--------------EEeec--CCCEEEEccCCceEEEee
Q 036314          311 ---------IDSHKDKVL--------------CADWW--RGDSVISGGVDSKLCVSS  342 (347)
Q Consensus       311 ---------~~~h~~~v~--------------~~~~~--~~~~l~s~s~D~~v~vw~  342 (347)
                               +.+  ++|.              ++.--  -|.+|+.|+.-+.|++.+
T Consensus       262 ~~~s~~s~WLsg--D~v~s~i~i~~ll~~~~~SinsfDV~g~~lVcgtd~eaIyl~~  316 (319)
T KOG4714|consen  262 NQASVISSWLSG--DPVKSRIEITSLLPSRSLSINSFDVLGPCLVCGTDAEAIYLTR  316 (319)
T ss_pred             CccccccccccC--CcccceEeeeccccccceeeeeeeccCceEEeccccceEEEec
Confidence                     111  1121              11110  277899999888888875

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.01  E-value=1.4e-06  Score=88.50  Aligned_cols=254  Identities=13%  Similarity=0.096  Sum_probs=143.1

Q ss_pred             CCCEEEEEecCCeEEEEcCCCeEEEEeec--cC------------CceEEEEEeecCCCceEEEEEccCCCcEEEEeccc
Q 036314           34 NPGFILTGCYDNLGRVWKAGGVCTHILEG--HC------------GAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDA   99 (347)
Q Consensus        34 ~~~~l~sg~~d~~i~iw~~~~~~~~~l~~--h~------------~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~   99 (347)
                      ++.++++-..++.|+++|..|..+..+.+  ..            .....|++.++++   ...++-...+.|+.+|+.+
T Consensus       579 ~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn---~LYVaDt~n~~Ir~id~~~  655 (1057)
T PLN02919        579 NNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKN---LLYVADTENHALREIDFVN  655 (1057)
T ss_pred             CCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCC---EEEEEeCCCceEEEEecCC
Confidence            45678888888999999988766544433  11            1235677766433   2344555667899999866


Q ss_pred             cccccCccccceeeeeec------c-ccceEEEEEeC-CCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCcccc
Q 036314          100 EELVNHPKKIRSFKILRG------H-KASVHSIAAET-SGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEE  171 (347)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~------h-~~~V~~v~~s~-~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~  171 (347)
                      +..............+.+      . -..-..+++++ ++.++++.+.++.|++||..++...     .....+...   
T Consensus       656 ~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-----~~~G~G~~~---  727 (1057)
T PLN02919        656 ETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-----VFSGDGYER---  727 (1057)
T ss_pred             CEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-----EEecCCccc---
Confidence            532100000000000000      0 11235789999 5667788888999999998654210     000000000   


Q ss_pred             ccccccccccccCCccceEEEEe-CCCCe-EEEEecCCcEEEEECCCCceeeee-----------eeC-----------e
Q 036314          172 PQLEGEAISTLVGHTQCVSSVVW-PQQET-IYSASWDHSVRTWDVEMGKDLSDI-----------FCG-----------K  227 (347)
Q Consensus       172 ~~~~~~~~~~~~~h~~~v~~~~~-~~~~~-l~s~s~dg~v~vwd~~~~~~~~~~-----------~~~-----------~  227 (347)
                       ...+... . ...-.....+++ ++++. +++-+.++.|++||+.++......           ..+           .
T Consensus       728 -~~~g~~~-~-~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~  804 (1057)
T PLN02919        728 -NLNGSSG-T-STSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQ  804 (1057)
T ss_pred             -cCCCCcc-c-cccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhcc
Confidence             0000000 0 000012345666 56664 456667789999999875421100           000           0


Q ss_pred             eeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecC--------------CCCCeeEEEeCCCCCeEEEEEeC
Q 036314          228 ALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSS--------------HNSWISACKWHNKSWFHLISASY  293 (347)
Q Consensus       228 ~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~--------------h~~~v~~v~~s~~~~~~l~s~s~  293 (347)
                      ....+++.+++ .++++...++.|++||.....    +.++.+              .......++++++|. ++++-+.
T Consensus       805 ~P~Gvavd~dG-~LYVADs~N~rIrviD~~tg~----v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~-lyVaDt~  878 (1057)
T PLN02919        805 HPLGVLCAKDG-QIYVADSYNHKIKKLDPATKR----VTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGR-LFVADTN  878 (1057)
T ss_pred             CCceeeEeCCC-cEEEEECCCCEEEEEECCCCe----EEEEeccCCcCCCCCcccccccCCceEEEEeCCCC-EEEEECC
Confidence            13456676554 577788889999999986321    222222              223456789999985 6788888


Q ss_pred             CCcEEEEEcCCCcc
Q 036314          294 DGKVMLWDLRTAWP  307 (347)
Q Consensus       294 D~~i~lwd~~~~~~  307 (347)
                      +++|++||+++++.
T Consensus       879 Nn~Irvid~~~~~~  892 (1057)
T PLN02919        879 NSLIRYLDLNKGEA  892 (1057)
T ss_pred             CCEEEEEECCCCcc
Confidence            99999999988754

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=98.96  E-value=6.2e-09  Score=104.33  Aligned_cols=192  Identities=18%  Similarity=0.275  Sum_probs=133.3

Q ss_pred             eeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEe
Q 036314          115 LRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW  194 (347)
Q Consensus       115 ~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  194 (347)
                      +..|-..|.++.-+|.-.+-+||+.||.|++|.-..+..    +.                  +.++ .|. ..|..+.|
T Consensus      2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~----v~------------------~~rt-~g~-s~vtr~~f 2259 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQ----VV------------------CFRT-AGN-SRVTRSRF 2259 (2439)
T ss_pred             eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCe----EE------------------Eeec-cCc-chhhhhhh
Confidence            344566677777788888999999999999996443211    00                  0111 111 34555555


Q ss_pred             -CCCCeEEEEecCCcEEEEECCCCceeeeeeeCe-eeEEEEeeCCCCcEEEEe---cCCCcEEEEeCCCCCCCCCeEEec
Q 036314          195 -PQQETIYSASWDHSVRTWDVEMGKDLSDIFCGK-ALNCIDIGGEGSALIAAG---GSDPILRIWDPRKPGTSAPVFQFS  269 (347)
Q Consensus       195 -~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~la~~---~~d~~i~iwd~~~~~~~~~~~~~~  269 (347)
                       .+|+.+..+..||.+.+|.+. ++.....++++ ....+.|-.   .+++++   .+++.+.+||.-.+.....+  ..
T Consensus      2260 ~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~~s~v--~~ 2333 (2439)
T KOG1064|consen 2260 NHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPPMNSLV--HT 2333 (2439)
T ss_pred             cccCCceeeeccCCceeecccC-CcceeccccCCccccceeeee---hhhhccccCCCCCcccchhcccCccccee--ee
Confidence             477888888999999999976 44444455443 344444432   345554   35789999997654322222  26


Q ss_pred             CCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecCCCCeEEEEeecCCCEEEEccCCceEEEeecccC
Q 036314          270 SHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKVLCADWWRGDSVISGGVDSKLCVSSGVSI  346 (347)
Q Consensus       270 ~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~D~~v~vw~~~~~  346 (347)
                      .|.+.++++++.|.. .+|+||+.+|.|.|||++..+..++++.         +....++++|+..|.++||+...+
T Consensus      2334 ~H~~gaT~l~~~P~~-qllisggr~G~v~l~D~rqrql~h~~~~---------~~~~~~f~~~ss~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2334 CHDGGATVLAYAPKH-QLLISGGRKGEVCLFDIRQRQLRHTFQA---------LDTREYFVTGSSEGNIKIWRLSEF 2400 (2439)
T ss_pred             ecCCCceEEEEcCcc-eEEEecCCcCcEEEeehHHHHHHHHhhh---------hhhhheeeccCcccceEEEEcccc
Confidence            899999999999987 4799999999999999998877776654         323457999999999999997643

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.95  E-value=3.6e-08  Score=85.06  Aligned_cols=153  Identities=16%  Similarity=0.202  Sum_probs=99.8

Q ss_pred             CEEEEEecCCeEEEEcCCC-----eEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccc
Q 036314           36 GFILTGCYDNLGRVWKAGG-----VCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIR  110 (347)
Q Consensus        36 ~~l~sg~~d~~i~iw~~~~-----~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~  110 (347)
                      .+||.+-.+....+++..+     ++......... -+++.|..+.. .......+++...+.+|....+.         
T Consensus        75 ~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~-~~ai~~~~~~~-sv~v~dkagD~~~~di~s~~~~~---------  143 (390)
T KOG3914|consen   75 RLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKR-PTAISFIREDT-SVLVADKAGDVYSFDILSADSGR---------  143 (390)
T ss_pred             eEEEEEeCCCceEEEEEecCCCcceeeeEeecccC-cceeeeeeccc-eEEEEeecCCceeeeeecccccC---------
Confidence            4666655555544554321     12222222222 24455554332 12223345555667777655332         


Q ss_pred             eeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceE
Q 036314          111 SFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVS  190 (347)
Q Consensus       111 ~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~  190 (347)
                       ...+.||-.-+..|+++||+++|+++.+|..||+-......                        ..-.-+-||+..|.
T Consensus       144 -~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f------------------------~IesfclGH~eFVS  198 (390)
T KOG3914|consen  144 -CEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATF------------------------VIESFCLGHKEFVS  198 (390)
T ss_pred             -cchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCccc------------------------chhhhccccHhhee
Confidence             22356899999999999999999999999999997554211                        01123467999999


Q ss_pred             EEEeCCCCeEEEEecCCcEEEEECCCCceeeeee
Q 036314          191 SVVWPQQETIYSASWDHSVRTWDVEMGKDLSDIF  224 (347)
Q Consensus       191 ~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~  224 (347)
                      .++.-++..|+|+|.|++|++||+++++.+..+.
T Consensus       199 ~isl~~~~~LlS~sGD~tlr~Wd~~sgk~L~t~d  232 (390)
T KOG3914|consen  199 TISLTDNYLLLSGSGDKTLRLWDITSGKLLDTCD  232 (390)
T ss_pred             eeeeccCceeeecCCCCcEEEEecccCCcccccc
Confidence            9998777789999999999999999999876543

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.94  E-value=1.9e-07  Score=86.22  Aligned_cols=281  Identities=17%  Similarity=0.228  Sum_probs=174.2

Q ss_pred             CcCCCCCcCCceeeccCC-CCCEEEEEecCCeEEEEcCC---------C-----e--EEEEeeccCCceEEEEEeecCCC
Q 036314           16 KEEEPSLHDDWVSAVDGS-NPGFILTGCYDNLGRVWKAG---------G-----V--CTHILEGHCGAVSSVNIIKSDGL   78 (347)
Q Consensus        16 ~~~~~~~h~~~v~~~~~~-~~~~l~sg~~d~~i~iw~~~---------~-----~--~~~~l~~h~~~V~~v~~~~~~~~   78 (347)
                      +.++..+......++... ..+|||.||.||.+++-.+.         |     .  .-++|.||.+.|.-+.|....  
T Consensus         6 skki~iPnnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~--   83 (1189)
T KOG2041|consen    6 SKKIGIPNNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENN--   83 (1189)
T ss_pred             ecccCCCCCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecccc--
Confidence            445555555667888877 57899999999999998652         1     0  114689999999999997632  


Q ss_pred             ceEEEEEccCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccc
Q 036314           79 KYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQV  158 (347)
Q Consensus        79 ~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~  158 (347)
                        +.|-|+..+|-|.+|-+-.+.-....       +-...++-|.+++|+.||..+.-.=.||.|.+=.++....-+   
T Consensus        84 --QKLTtSDt~GlIiVWmlykgsW~EEM-------iNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwg---  151 (1189)
T KOG2041|consen   84 --QKLTTSDTSGLIIVWMLYKGSWCEEM-------INNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWG---  151 (1189)
T ss_pred             --ccccccCCCceEEEEeeecccHHHHH-------hhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecc---
Confidence              35778888999999988655321110       001235668899999999999888888888775544221100   


Q ss_pred             eeeeccCCCccccccccccccccccCCccceEEEEeC-CCCeEEEEecCCcEEEEECCCCceee-----eee-------e
Q 036314          159 SIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWP-QQETIYSASWDHSVRTWDVEMGKDLS-----DIF-------C  225 (347)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~l~s~s~dg~v~vwd~~~~~~~~-----~~~-------~  225 (347)
                                        +   .+++.  -...+.|+ +.+.++.+-.+|.+.+||....-..+     .+.       .
T Consensus       152 ------------------K---eLkg~--~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~  208 (1189)
T KOG2041|consen  152 ------------------K---ELKGQ--LLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNF  208 (1189)
T ss_pred             ------------------h---hcchh--eccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCC
Confidence                              0   11111  01234454 44556666677889999865331110     000       0


Q ss_pred             CeeeEEEE-------eeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCC---
Q 036314          226 GKALNCID-------IGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDG---  295 (347)
Q Consensus       226 ~~~~~~~~-------~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~---  295 (347)
                      +..+..+.       ..+|+...+|.+-..|.+.|..-.+  .+.|...  ...=++....|+++|. .||.++.|.   
T Consensus       209 ~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eN--D~~Pvv~--dtgm~~vgakWnh~G~-vLAvcG~~~da~  283 (1189)
T KOG2041|consen  209 PTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSEN--DPEPVVV--DTGMKIVGAKWNHNGA-VLAVCGNDSDAD  283 (1189)
T ss_pred             CccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcC--CCCCeEE--ecccEeecceecCCCc-EEEEccCccccc
Confidence            11111111       2245677889999999998875432  3334322  1224678899999996 588887652   


Q ss_pred             ------cEEEEEcCCCccceeecCCCCeEEEEeec-CCCEEEEccCCceEEE
Q 036314          296 ------KVMLWDLRTAWPLSVIDSHKDKVLCADWW-RGDSVISGGVDSKLCV  340 (347)
Q Consensus       296 ------~i~lwd~~~~~~~~~~~~h~~~v~~~~~~-~~~~l~s~s~D~~v~v  340 (347)
                            .|..+..- |..+.+++-....|+++.|- .|-++|-+ .|+.|.+
T Consensus       284 ~~~d~n~v~Fysp~-G~i~gtlkvpg~~It~lsWEg~gLriA~A-vdsfiyf  333 (1189)
T KOG2041|consen  284 EPTDSNKVHFYSPY-GHIVGTLKVPGSCITGLSWEGTGLRIAIA-VDSFIYF  333 (1189)
T ss_pred             CccccceEEEeccc-hhheEEEecCCceeeeeEEcCCceEEEEE-ecceEEE
Confidence                  45555442 55667777666788999994 45565543 3666544

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.94  E-value=1.6e-06  Score=79.03  Aligned_cols=270  Identities=13%  Similarity=0.103  Sum_probs=139.3

Q ss_pred             CCEEEEEecCCeEEEEcC-CCeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceee
Q 036314           35 PGFILTGCYDNLGRVWKA-GGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFK  113 (347)
Q Consensus        35 ~~~l~sg~~d~~i~iw~~-~~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~  113 (347)
                      ++.++.++.|+.+..+|. .|+.+...... +.+.+.-... +    ..++.++.|+.|..||.++++..-..+......
T Consensus       105 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~-~~~~~~p~v~-~----~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~  178 (377)
T TIGR03300       105 GGLVFVGTEKGEVIALDAEDGKELWRAKLS-SEVLSPPLVA-N----GLVVVRTNDGRLTALDAATGERLWTYSRVTPAL  178 (377)
T ss_pred             CCEEEEEcCCCEEEEEECCCCcEeeeeccC-ceeecCCEEE-C----CEEEEECCCCeEEEEEcCCCceeeEEccCCCce
Confidence            455666777777777776 46554433221 1122111111 1    135567778899999987765321100000000


Q ss_pred             eeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEE
Q 036314          114 ILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVV  193 (347)
Q Consensus       114 ~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~  193 (347)
                      .+.+...++    +.  +..++.+..++.+..+|.+++......      .......     ......+...   .....
T Consensus       179 ~~~~~~sp~----~~--~~~v~~~~~~g~v~ald~~tG~~~W~~------~~~~~~g-----~~~~~~~~~~---~~~p~  238 (377)
T TIGR03300       179 TLRGSASPV----IA--DGGVLVGFAGGKLVALDLQTGQPLWEQ------RVALPKG-----RTELERLVDV---DGDPV  238 (377)
T ss_pred             eecCCCCCE----EE--CCEEEEECCCCEEEEEEccCCCEeeee------ccccCCC-----CCchhhhhcc---CCccE
Confidence            011111111    11  235677788888888888765321100      0000000     0000000000   00001


Q ss_pred             eCCCCeEEEEecCCcEEEEECCCCceeeeeeeCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCC-C
Q 036314          194 WPQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSH-N  272 (347)
Q Consensus       194 ~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h-~  272 (347)
                      . .++.++.++.+|.+..||.++++.+-...... .....+  .++ .+..++.|+.+..+|....+   .+...... .
T Consensus       239 ~-~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~-~~~p~~--~~~-~vyv~~~~G~l~~~d~~tG~---~~W~~~~~~~  310 (377)
T TIGR03300       239 V-DGGQVYAVSYQGRVAALDLRSGRVLWKRDASS-YQGPAV--DDN-RLYVTDADGVVVALDRRSGS---ELWKNDELKY  310 (377)
T ss_pred             E-ECCEEEEEEcCCEEEEEECCCCcEEEeeccCC-ccCceE--eCC-EEEEECCCCeEEEEECCCCc---EEEccccccC
Confidence            1 34678888899999999999887553332111 111122  233 45666789999999986432   12222111 1


Q ss_pred             CCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecCCCCeEEE-EeecCCCEEEEccCCceEEEee
Q 036314          273 SWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKVLC-ADWWRGDSVISGGVDSKLCVSS  342 (347)
Q Consensus       273 ~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h~~~v~~-~~~~~~~~l~s~s~D~~v~vw~  342 (347)
                      ....+....  +. .|+.++.||.+.++|.++++.+..+..+...+.. ..+. ++.|..++.||.|..++
T Consensus       311 ~~~ssp~i~--g~-~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~-~~~l~v~~~dG~l~~~~  377 (377)
T TIGR03300       311 RQLTAPAVV--GG-YLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVV-GDGLLVQTRDGDLYAFR  377 (377)
T ss_pred             CccccCEEE--CC-EEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEE-CCEEEEEeCCceEEEeC
Confidence            111222221  22 5888999999999999999888777655544332 2333 45677888999987653

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.94  E-value=6.3e-07  Score=81.09  Aligned_cols=190  Identities=13%  Similarity=0.175  Sum_probs=128.8

Q ss_pred             CCEEEEEecCCeEEEEcCC-CeEEEEeec--c-CCceEEEEE------ee----------cCCCceEEEEEccCCCcEEE
Q 036314           35 PGFILTGCYDNLGRVWKAG-GVCTHILEG--H-CGAVSSVNI------IK----------SDGLKYVTVATASKDQTLRL   94 (347)
Q Consensus        35 ~~~l~sg~~d~~i~iw~~~-~~~~~~l~~--h-~~~V~~v~~------~~----------~~~~~~~~l~s~s~Dg~v~~   94 (347)
                      ..|+|....||.+|+|+.. ++..+.|..  | ++.-.+..|      +|          ....+-.+++-|...|.|.+
T Consensus         5 ~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~   84 (541)
T KOG4547|consen    5 LDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLL   84 (541)
T ss_pred             hheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEE
Confidence            4589999999999999964 433333331  1 122222222      11          11223457888999999999


Q ss_pred             EeccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccc
Q 036314           95 WKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQL  174 (347)
Q Consensus        95 wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (347)
                      |++..+++..       .-.-..|.++|.++..+.+-..|.|++.|+.+-.|+.....                      
T Consensus        85 ys~~~g~it~-------~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~----------------------  135 (541)
T KOG4547|consen   85 YSVAGGEITA-------KLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKV----------------------  135 (541)
T ss_pred             EEecCCeEEE-------EEecCCCCCcceeeecccccCceEecCCceeEEEEecccce----------------------
Confidence            9998876431       11224699999999988888999999999999999876431                      


Q ss_pred             cccccccccCCccceEEEEe-CCCCeEEEEecCCcEEEEECCCCceeeeeeeC-eeeEEEEeeCC-----CCcEEEEecC
Q 036314          175 EGEAISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFCG-KALNCIDIGGE-----GSALIAAGGS  247 (347)
Q Consensus       175 ~~~~~~~~~~h~~~v~~~~~-~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~-~~~~~~~~~~~-----~~~~la~~~~  247 (347)
                         .++.+...+.-+.++.. |++..++++|  +.|++||+++.+.+.++..+ .++.++.|...     +..++.+...
T Consensus       136 ---~~~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~  210 (541)
T KOG4547|consen  136 ---IIRIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAA  210 (541)
T ss_pred             ---eeeeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeecccc
Confidence               23334444445566665 6778888765  78999999999988887644 47888887644     3445555555


Q ss_pred             CCcEEEEeCCC
Q 036314          248 DPILRIWDPRK  258 (347)
Q Consensus       248 d~~i~iwd~~~  258 (347)
                      +.-+.+|-.+.
T Consensus       211 ~r~i~~w~v~~  221 (541)
T KOG4547|consen  211 ERGITVWVVEK  221 (541)
T ss_pred             ccceeEEEEEc
Confidence            66677786553

>PRK00178 tolB translocation protein TolB; Provisional

Probab=98.93  E-value=3.9e-07  Score=84.54  Aligned_cols=217  Identities=13%  Similarity=0.050  Sum_probs=117.6

Q ss_pred             CcCCceeeccCC-CCCEEEEEecC---CeEEEEcCCCeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCC--cEEEE
Q 036314           22 LHDDWVSAVDGS-NPGFILTGCYD---NLGRVWKAGGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQ--TLRLW   95 (347)
Q Consensus        22 ~h~~~v~~~~~~-~~~~l~sg~~d---~~i~iw~~~~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg--~v~~w   95 (347)
                      .+...+...+++ +++.|+..+.+   ..|.+|++.+...+.+....+.+....|+|++.   ..+++.+.+|  .|.+|
T Consensus       196 ~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~---~la~~~~~~g~~~Iy~~  272 (430)
T PRK00178        196 QSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGS---KLAFVLSKDGNPEIYVM  272 (430)
T ss_pred             cCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCC---EEEEEEccCCCceEEEE
Confidence            456677777877 55677776654   368888876433333444444456788998553   2334555555  57777


Q ss_pred             eccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEee-CCCc--EEEEecCCCCCCCccceeeeccCCCccccc
Q 036314           96 KFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGS-WDCT--ISLWRTNDSDAAGNQVSIKKRKGNNQVEEP  172 (347)
Q Consensus        96 d~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs-~Dg~--I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  172 (347)
                      |+.+++.          ..+..+........|+|||+.++-.+ .++.  |.++++.++...                  
T Consensus       273 d~~~~~~----------~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~------------------  324 (430)
T PRK00178        273 DLASRQL----------SRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAE------------------  324 (430)
T ss_pred             ECCCCCe----------EEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEE------------------
Confidence            8766532          22334444556678999998765443 4444  555555432110                  


Q ss_pred             cccccccccccCCccceEEEEe-CCCCeEEEEecC-C--cEEEEECCCCceeeeeeeCeeeEEEEeeCCCCcEEEEecCC
Q 036314          173 QLEGEAISTLVGHTQCVSSVVW-PQQETIYSASWD-H--SVRTWDVEMGKDLSDIFCGKALNCIDIGGEGSALIAAGGSD  248 (347)
Q Consensus       173 ~~~~~~~~~~~~h~~~v~~~~~-~~~~~l~s~s~d-g--~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~d  248 (347)
                           .+ +..+.  ......| |+++.|+..+.+ +  .|.+||+.++.. ..+..........++|++..++.+...+
T Consensus       325 -----~l-t~~~~--~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~-~~lt~~~~~~~p~~spdg~~i~~~~~~~  395 (430)
T PRK00178        325 -----RV-TFVGN--YNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV-RILTDTSLDESPSVAPNGTMLIYATRQQ  395 (430)
T ss_pred             -----Ee-ecCCC--CccceEECCCCCEEEEEEccCCceEEEEEECCCCCE-EEccCCCCCCCceECCCCCEEEEEEecC
Confidence                 00 01111  1122344 577777665543 3  477889887653 3332222222346777666555554444


Q ss_pred             C--cEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCC
Q 036314          249 P--ILRIWDPRKPGTSAPVFQFSSHNSWISACKWHN  282 (347)
Q Consensus       249 ~--~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~  282 (347)
                      +  .+.++++..  .  ....+..+...+...+|+|
T Consensus       396 g~~~l~~~~~~g--~--~~~~l~~~~g~~~~p~ws~  427 (430)
T PRK00178        396 GRGVLMLVSING--R--VRLPLPTAQGEVREPSWSP  427 (430)
T ss_pred             CceEEEEEECCC--C--ceEECcCCCCCcCCCccCC
Confidence            3  455666542  1  1234444445566667776

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.91  E-value=4.9e-07  Score=83.97  Aligned_cols=216  Identities=9%  Similarity=0.035  Sum_probs=113.8

Q ss_pred             cCCceeeccCC-CCCEEEEEec-CC--eEEEEcCCCeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCc--EEEEe
Q 036314           23 HDDWVSAVDGS-NPGFILTGCY-DN--LGRVWKAGGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQT--LRLWK   96 (347)
Q Consensus        23 h~~~v~~~~~~-~~~~l~sg~~-d~--~i~iw~~~~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~--v~~wd   96 (347)
                      +...+....++ +++.|+..+. ++  .|.+||+.+.....+....+......|+|++.   ..+++.+.++.  |.++|
T Consensus       216 ~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~---~La~~~~~~g~~~Iy~~d  292 (448)
T PRK04792        216 SPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGK---KLALVLSKDGQPEIYVVD  292 (448)
T ss_pred             CCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCC---EEEEEEeCCCCeEEEEEE
Confidence            34456677777 4567776554 33  57777875322223332233345678998653   23445667776  55666


Q ss_pred             ccccccccCccccceeeeeeccccceEEEEEeCCCCEEEE-eeCCCcEEEE--ecCCCCCCCccceeeeccCCCcccccc
Q 036314           97 FDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCS-GSWDCTISLW--RTNDSDAAGNQVSIKKRKGNNQVEEPQ  173 (347)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~s-gs~Dg~I~iw--d~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (347)
                      +.+++.          ..+..+.......+|+|||+.++. ...++...||  |+.++..                    
T Consensus       293 l~tg~~----------~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~--------------------  342 (448)
T PRK04792        293 IATKAL----------TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKV--------------------  342 (448)
T ss_pred             CCCCCe----------EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE--------------------
Confidence            655431          233344455567889999987754 4445555555  4433210                    


Q ss_pred             ccccccccccCCccceEEEEe-CCCCeEEEEec-CCc--EEEEECCCCceeeeeeeCeeeEEEEeeCCCCcEEEEecCCC
Q 036314          174 LEGEAISTLVGHTQCVSSVVW-PQQETIYSASW-DHS--VRTWDVEMGKDLSDIFCGKALNCIDIGGEGSALIAAGGSDP  249 (347)
Q Consensus       174 ~~~~~~~~~~~h~~~v~~~~~-~~~~~l~s~s~-dg~--v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~d~  249 (347)
                         ..+ ++.++  ......| |+++.|+..+. ++.  |.++|+.++.. ..+..........++|++..++.+...++
T Consensus       343 ---~~L-t~~g~--~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~-~~lt~~~~d~~ps~spdG~~I~~~~~~~g  415 (448)
T PRK04792        343 ---SRL-TFEGE--QNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAM-QVLTSTRLDESPSVAPNGTMVIYSTTYQG  415 (448)
T ss_pred             ---EEE-ecCCC--CCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCe-EEccCCCCCCCceECCCCCEEEEEEecCC
Confidence               000 11111  1122344 67777766554 343  44568777653 22222211122357777665655555555


Q ss_pred             c--EEEEeCCCCCCCCCeEEecCCCCCeeEEEeCC
Q 036314          250 I--LRIWDPRKPGTSAPVFQFSSHNSWISACKWHN  282 (347)
Q Consensus       250 ~--i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~  282 (347)
                      .  +.+++...  .  ....+..+.+.+...+|+|
T Consensus       416 ~~~l~~~~~~G--~--~~~~l~~~~g~~~~p~Wsp  446 (448)
T PRK04792        416 KQVLAAVSIDG--R--FKARLPAGQGEVKSPAWSP  446 (448)
T ss_pred             ceEEEEEECCC--C--ceEECcCCCCCcCCCccCC
Confidence            4  66667542  2  2344555555667777876

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=98.89  E-value=8.6e-06  Score=73.18  Aligned_cols=267  Identities=11%  Similarity=0.129  Sum_probs=147.5

Q ss_pred             ccCC-CCCEEEEEec----CCeEEEEcCC---CeEEE--EeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccc
Q 036314           30 VDGS-NPGFILTGCY----DNLGRVWKAG---GVCTH--ILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDA   99 (347)
Q Consensus        30 ~~~~-~~~~l~sg~~----d~~i~iw~~~---~~~~~--~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~   99 (347)
                      ++++ ++++|.+...    ++.|..|+..   +.+..  ...........+++.+++.   ..+++...+|+|.++++..
T Consensus        42 l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~---~l~vany~~g~v~v~~l~~  118 (345)
T PF10282_consen   42 LAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGR---FLYVANYGGGSVSVFPLDD  118 (345)
T ss_dssp             EEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSS---EEEEEETTTTEEEEEEECT
T ss_pred             EEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCC---EEEEEEccCCeEEEEEccC
Confidence            4444 4566666665    4688888642   43322  2222233445677777543   2444455799999999976


Q ss_pred             c-ccccCccccceeeeee--------ccccceEEEEEeCCCCEEEEe-eCCCcEEEEecCCCCCCCccceeeeccCCCcc
Q 036314          100 E-ELVNHPKKIRSFKILR--------GHKASVHSIAAETSGNMVCSG-SWDCTISLWRTNDSDAAGNQVSIKKRKGNNQV  169 (347)
Q Consensus       100 ~-~~~~~~~~~~~~~~~~--------~h~~~V~~v~~s~~~~~l~sg-s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~  169 (347)
                      . .+....    ......        .-....+++.|+|+|++++.. -....|.+|++......   ...         
T Consensus       119 ~g~l~~~~----~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~---l~~---------  182 (345)
T PF10282_consen  119 DGSLGEVV----QTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGK---LTP---------  182 (345)
T ss_dssp             TSEEEEEE----EEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-T---EEE---------
T ss_pred             Ccccceee----eecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCce---EEE---------
Confidence            3 221100    000010        113447899999999987765 22347899988653210   000         


Q ss_pred             ccccccccccccccCCccceEEEEe-CCCCeEE-EEecCCcEEEEECC--CCce--eeeeee-------CeeeEEEEeeC
Q 036314          170 EEPQLEGEAISTLVGHTQCVSSVVW-PQQETIY-SASWDHSVRTWDVE--MGKD--LSDIFC-------GKALNCIDIGG  236 (347)
Q Consensus       170 ~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~l~-s~s~dg~v~vwd~~--~~~~--~~~~~~-------~~~~~~~~~~~  236 (347)
                            ...+ .+. ....-+.+.| +++++++ ..-.+++|.++++.  .+..  +..+..       ......+.+++
T Consensus       183 ------~~~~-~~~-~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~isp  254 (345)
T PF10282_consen  183 ------VDSI-KVP-PGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISP  254 (345)
T ss_dssp             ------EEEE-ECS-TTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-T
T ss_pred             ------eecc-ccc-cCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEec
Confidence                  0000 111 1122345666 5667664 44567789999887  3321  111111       11356788888


Q ss_pred             CCCcEEEEecCCCcEEEEeCCCC-CCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcC--CCccceeec-
Q 036314          237 EGSALIAAGGSDPILRIWDPRKP-GTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLR--TAWPLSVID-  312 (347)
Q Consensus       237 ~~~~~la~~~~d~~i~iwd~~~~-~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~--~~~~~~~~~-  312 (347)
                      ++..+.++.-..+.|.+|++... +....+..+......-+.+.++|++.+++++.-.++.|.+|+++  +|.....-. 
T Consensus       255 dg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~  334 (345)
T PF10282_consen  255 DGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSS  334 (345)
T ss_dssp             TSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEE
T ss_pred             CCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEeccc
Confidence            77777777777899999998432 22233344444455678999999998766666688899999774  554322211 


Q ss_pred             CCCCeEEEEee
Q 036314          313 SHKDKVLCADW  323 (347)
Q Consensus       313 ~h~~~v~~~~~  323 (347)
                      ..-....|+.|
T Consensus       335 ~~~~~p~ci~f  345 (345)
T PF10282_consen  335 VPIPSPVCIVF  345 (345)
T ss_dssp             EESSSEEEEEE
T ss_pred             ccCCCCEEEeC
Confidence            12345667765

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.88  E-value=8.3e-09  Score=60.72  Aligned_cols=37  Identities=43%  Similarity=0.737  Sum_probs=35.0

Q ss_pred             eeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEe
Q 036314          111 SFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWR  147 (347)
Q Consensus       111 ~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd  147 (347)
                      ++.++.+|..+|.+++|+|++.+|++++.|++|++||
T Consensus         3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             EEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            5678899999999999999999999999999999996

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PRK01029 tolB translocation protein TolB; Provisional

Probab=98.81  E-value=1.8e-06  Score=79.68  Aligned_cols=197  Identities=14%  Similarity=0.138  Sum_probs=105.5

Q ss_pred             ccccceEEEEEeCCCCE---EEEeeCCCc--EEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEE
Q 036314          117 GHKASVHSIAAETSGNM---VCSGSWDCT--ISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSS  191 (347)
Q Consensus       117 ~h~~~V~~v~~s~~~~~---l~sgs~Dg~--I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~  191 (347)
                      .....+.+=+|+|||+.   ++..-.++.  |.+.++..+..                       ..+..+.+.   ...
T Consensus       182 ~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~-----------------------~~lt~~~g~---~~~  235 (428)
T PRK01029        182 QEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAG-----------------------KKILALQGN---QLM  235 (428)
T ss_pred             cCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCc-----------------------eEeecCCCC---ccc
Confidence            34445566689999974   234545554  44445543311                       112222222   233


Q ss_pred             EEe-CCCCeEEEEec-----CCcEEEEECCCC--ceeeeeeeC--eeeEEEEeeCCCCcEEEEecCCCcEEEEe--CCCC
Q 036314          192 VVW-PQQETIYSASW-----DHSVRTWDVEMG--KDLSDIFCG--KALNCIDIGGEGSALIAAGGSDPILRIWD--PRKP  259 (347)
Q Consensus       192 ~~~-~~~~~l~s~s~-----dg~v~vwd~~~~--~~~~~~~~~--~~~~~~~~~~~~~~~la~~~~d~~i~iwd--~~~~  259 (347)
                      ..| |+++.|+..+.     |-.+.+|++..+  .....+...  .......|+|++..++.+...++...+|.  +...
T Consensus       236 p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~  315 (428)
T PRK01029        236 PTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPE  315 (428)
T ss_pred             eEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECccc
Confidence            456 67877765543     223445776643  122223222  12245678776665555554566555554  4321


Q ss_pred             CCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCC--CcEEEEEcCCCccceeecCCCCeEEEEeecC-CCEEE-EccC-
Q 036314          260 GTSAPVFQFSSHNSWISACKWHNKSWFHLISASYD--GKVMLWDLRTAWPLSVIDSHKDKVLCADWWR-GDSVI-SGGV-  334 (347)
Q Consensus       260 ~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D--~~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~l~-s~s~-  334 (347)
                      +  .....+..+...+....|+|||..++.++..+  ..|.+||+.+++. ..+......+....|+| |+.|+ ++.. 
T Consensus       316 g--~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~-~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~  392 (428)
T PRK01029        316 G--QSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRD-YQLTTSPENKESPSWAIDSLHLVYSAGNS  392 (428)
T ss_pred             c--cceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCe-EEccCCCCCccceEECCCCCEEEEEECCC
Confidence            1  12334445556677889999997644444333  3699999988764 33433334567788985 66654 3333 


Q ss_pred             -CceEEEee
Q 036314          335 -DSKLCVSS  342 (347)
Q Consensus       335 -D~~v~vw~  342 (347)
                       ...|.+++
T Consensus       393 g~~~L~~vd  401 (428)
T PRK01029        393 NESELYLIS  401 (428)
T ss_pred             CCceEEEEE
Confidence             34566655

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.78  E-value=1.7e-07  Score=80.91  Aligned_cols=144  Identities=15%  Similarity=0.112  Sum_probs=95.6

Q ss_pred             CCCeEEEEecCCcEEEEECCCCce-eeee--e-eCeeeEEEEeeCCCCcEEEE--ecCCCcEEEEeCCCCCCCCCeEEec
Q 036314          196 QQETIYSASWDHSVRTWDVEMGKD-LSDI--F-CGKALNCIDIGGEGSALIAA--GGSDPILRIWDPRKPGTSAPVFQFS  269 (347)
Q Consensus       196 ~~~~l~s~s~dg~v~vwd~~~~~~-~~~~--~-~~~~~~~~~~~~~~~~~la~--~~~d~~i~iwd~~~~~~~~~~~~~~  269 (347)
                      .++.+|.+..++...++++..... .+.+  . .....+.+.+...+...+++  .++...+.+|.... ..   .....
T Consensus        73 ~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~-~~---~~~~l  148 (390)
T KOG3914|consen   73 SGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADS-GR---CEPIL  148 (390)
T ss_pred             CceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccc-cC---cchhh
Confidence            455677777777776777654432 1111  1 12223333343333333222  23344455554432 22   23445


Q ss_pred             CCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceee-cCCCCeEEEEeecCCCEEEEccCCceEEEeecc
Q 036314          270 SHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVI-DSHKDKVLCADWWRGDSVISGGVDSKLCVSSGV  344 (347)
Q Consensus       270 ~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~l~s~s~D~~v~vw~~~  344 (347)
                      ||-+-+.+|+|+||+. +++++..|..||+-.......+..| .||++-|..++.-+++.|+|||.|++|++|+-.
T Consensus       149 GhvSml~dVavS~D~~-~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~~LlS~sGD~tlr~Wd~~  223 (390)
T KOG3914|consen  149 GHVSMLLDVAVSPDDQ-FIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNYLLLSGSGDKTLRLWDIT  223 (390)
T ss_pred             hhhhhhheeeecCCCC-EEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCceeeecCCCCcEEEEecc
Confidence            8999999999999984 7999999999999877655555555 589999999998888889999999999999865

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=98.73  E-value=0.00011  Score=66.70  Aligned_cols=127  Identities=12%  Similarity=0.249  Sum_probs=87.7

Q ss_pred             CcEEEEECCCCceeeeeeeCeeeEEEEeeCCCCcEEEEec-CCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCC
Q 036314          207 HSVRTWDVEMGKDLSDIFCGKALNCIDIGGEGSALIAAGG-SDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSW  285 (347)
Q Consensus       207 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~-~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~  285 (347)
                      .++.+.++....+...+....++.++.|++.+..+.+..| -=.++.|||++.    .+++.+  ..+.=+++-|+|.|.
T Consensus       251 q~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~----~~v~df--~egpRN~~~fnp~g~  324 (566)
T KOG2315|consen  251 QTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG----KPVFDF--PEGPRNTAFFNPHGN  324 (566)
T ss_pred             ceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCC----CEeEeC--CCCCccceEECCCCC
Confidence            3677888775455555555678999999887766554443 356899999974    235554  334456788999997


Q ss_pred             eEEEEEeC---CCcEEEEEcCCCccceeecCCCCeEEEEeecC-CCEEEEccC------CceEEEee
Q 036314          286 FHLISASY---DGKVMLWDLRTAWPLSVIDSHKDKVLCADWWR-GDSVISGGV------DSKLCVSS  342 (347)
Q Consensus       286 ~~l~s~s~---D~~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~l~s~s~------D~~v~vw~  342 (347)
                      . |+-++.   -|.+.+||+.+.+.+..+.. .+. +-++|+| |.+|.|+..      |+-++||.
T Consensus       325 i-i~lAGFGNL~G~mEvwDv~n~K~i~~~~a-~~t-t~~eW~PdGe~flTATTaPRlrvdNg~Kiwh  388 (566)
T KOG2315|consen  325 I-ILLAGFGNLPGDMEVWDVPNRKLIAKFKA-ANT-TVFEWSPDGEYFLTATTAPRLRVDNGIKIWH  388 (566)
T ss_pred             E-EEEeecCCCCCceEEEeccchhhcccccc-CCc-eEEEEcCCCcEEEEEeccccEEecCCeEEEE
Confidence            6 444554   48999999998887887765 233 3459985 777766653      67788885

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.73  E-value=4.4e-06  Score=68.83  Aligned_cols=208  Identities=14%  Similarity=0.084  Sum_probs=127.0

Q ss_pred             EEEEccCCCcEEEEeccccccccCccccceeeeeeccccceEEEE-EeCCCCEEEEeeCCCcEEEEecCCCCCCCcccee
Q 036314           82 TVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIA-AETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSI  160 (347)
Q Consensus        82 ~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~-~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~  160 (347)
                      .||.|+.-|+..+|...+++..        .+.-.-|...|.-+. +......+.-++.|.++++.+++-....      
T Consensus        86 ~la~gG~~g~fd~~~~~tn~~h--------~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~------  151 (344)
T KOG4532|consen   86 TLADGGASGQFDLFACNTNDGH--------LYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNK------  151 (344)
T ss_pred             EEEeccccceeeeecccCcccc--------eeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCccc------
Confidence            6899999999999998765421        112223444333221 1112234556889999999987643210      


Q ss_pred             eeccCCCccccccccccccccccCCcc--ceEEEEe-CCCCeEEEEecCCcEEEEECCCC-ceeeeeee---CeeeEEEE
Q 036314          161 KKRKGNNQVEEPQLEGEAISTLVGHTQ--CVSSVVW-PQQETIYSASWDHSVRTWDVEMG-KDLSDIFC---GKALNCID  233 (347)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~~~~-~~~~~l~s~s~dg~v~vwd~~~~-~~~~~~~~---~~~~~~~~  233 (347)
                                           ..-|..  .+.++++ +++..+++.+....|-.|.+... +.+..+..   ...-.+..
T Consensus       152 ---------------------~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S  210 (344)
T KOG4532|consen  152 ---------------------FAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNS  210 (344)
T ss_pred             ---------------------ceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeee
Confidence                                 011221  1456666 46677888888888999988543 33333221   11234566


Q ss_pred             eeCCCCcEEEEecCCCcEEEEeCCCCCCCCC--eEEecCCCCCeeEEEeCCCCCeEEEEEe-CCCcEEEEEcCCCcccee
Q 036314          234 IGGEGSALIAAGGSDPILRIWDPRKPGTSAP--VFQFSSHNSWISACKWHNKSWFHLISAS-YDGKVMLWDLRTAWPLSV  310 (347)
Q Consensus       234 ~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~--~~~~~~h~~~v~~v~~s~~~~~~l~s~s-~D~~i~lwd~~~~~~~~~  310 (347)
                      |+..+ ..+|++.+||++.|||+|..+.+..  ..+-..|.+.+..|.|+|.|..-|+=-+ .-+.+.|-|+|+....+.
T Consensus       211 ~s~~~-~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~  289 (344)
T KOG4532|consen  211 FSEND-LQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQV  289 (344)
T ss_pred             eccCc-ceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeE
Confidence            65544 5789999999999999986543311  1233568889999999987653333333 347899999998765544


Q ss_pred             ec-------CCC-CeEEEEeecC
Q 036314          311 ID-------SHK-DKVLCADWWR  325 (347)
Q Consensus       311 ~~-------~h~-~~v~~~~~~~  325 (347)
                      +.       -|. ..+.+..|++
T Consensus       290 I~i~~d~~~~~~tq~ifgt~f~~  312 (344)
T KOG4532|consen  290 IVIPDDVERKHNTQHIFGTNFNN  312 (344)
T ss_pred             EecCccccccccccccccccccC
Confidence            32       232 2366777763

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.72  E-value=1.8e-05  Score=80.66  Aligned_cols=261  Identities=11%  Similarity=0.072  Sum_probs=142.1

Q ss_pred             EEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccce-e--ee-eeccccceEEEEEeCCCCEEE-EeeCCCcE
Q 036314           69 SVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRS-F--KI-LRGHKASVHSIAAETSGNMVC-SGSWDCTI  143 (347)
Q Consensus        69 ~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~-~--~~-~~~h~~~V~~v~~s~~~~~l~-sgs~Dg~I  143 (347)
                      .+++.+.++   ...++-+..+.|++||............... .  .. -.++-.....++++++++.|+ +-...+.|
T Consensus       572 gvavd~~~g---~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~I  648 (1057)
T PLN02919        572 KLAIDLLNN---RLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHAL  648 (1057)
T ss_pred             eEEEECCCC---eEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceE
Confidence            455554322   3567778888999999764321100000000 0  00 001112346789998887554 44556789


Q ss_pred             EEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEeC--CCCeEEEEecCCcEEEEECCCCceee
Q 036314          144 SLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWP--QQETIYSASWDHSVRTWDVEMGKDLS  221 (347)
Q Consensus       144 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~l~s~s~dg~v~vwd~~~~~~~~  221 (347)
                      +++|..+...     ......+..   .....+.......... .-..+++.  ++..+++.+.++.|++||..++... 
T Consensus       649 r~id~~~~~V-----~tlag~G~~---g~~~~gg~~~~~~~ln-~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-  718 (1057)
T PLN02919        649 REIDFVNETV-----RTLAGNGTK---GSDYQGGKKGTSQVLN-SPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-  718 (1057)
T ss_pred             EEEecCCCEE-----EEEeccCcc---cCCCCCChhhhHhhcC-CCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-
Confidence            9998764311     000000000   0000000000000000 11356663  3445567778889999998776432 


Q ss_pred             eeee----------------CeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCC----------CCeEEecCC----
Q 036314          222 DIFC----------------GKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTS----------APVFQFSSH----  271 (347)
Q Consensus       222 ~~~~----------------~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~----------~~~~~~~~h----  271 (347)
                      .+..                -.....+++++++..++++...++.|++||+......          .....+..+    
T Consensus       719 ~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g  798 (1057)
T PLN02919        719 VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVG  798 (1057)
T ss_pred             EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCch
Confidence            1110                0123457887776667778888899999998643210          000111101    


Q ss_pred             ----CCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecC--------------CCCeEEEEeec-CCCEEEEc
Q 036314          272 ----NSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDS--------------HKDKVLCADWW-RGDSVISG  332 (347)
Q Consensus       272 ----~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~--------------h~~~v~~~~~~-~~~~l~s~  332 (347)
                          ...-..++++++|. ++++-+.+++|++||.+++... ++.+              +-....++++. +|+.+++-
T Consensus       799 ~~~~l~~P~Gvavd~dG~-LYVADs~N~rIrviD~~tg~v~-tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaD  876 (1057)
T PLN02919        799 SEVLLQHPLGVLCAKDGQ-IYVADSYNHKIKKLDPATKRVT-TLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVAD  876 (1057)
T ss_pred             hhhhccCCceeeEeCCCc-EEEEECCCCEEEEEECCCCeEE-EEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEE
Confidence                01234688899885 5777888999999999876533 2221              12246678886 57778888


Q ss_pred             cCCceEEEeecc
Q 036314          333 GVDSKLCVSSGV  344 (347)
Q Consensus       333 s~D~~v~vw~~~  344 (347)
                      +.+++|++|+..
T Consensus       877 t~Nn~Irvid~~  888 (1057)
T PLN02919        877 TNNSLIRYLDLN  888 (1057)
T ss_pred             CCCCEEEEEECC
Confidence            899999999864

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.69  E-value=1.3e-06  Score=81.00  Aligned_cols=240  Identities=16%  Similarity=0.193  Sum_probs=146.5

Q ss_pred             CceEEEEEeecCCCceEEEEEccCCCcEEEEecccccc------ccCccccceeeeeeccccceEEEEEeCCCCEEEEee
Q 036314           65 GAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEEL------VNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGS  138 (347)
Q Consensus        65 ~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~------~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs  138 (347)
                      ....++.|....+    ++|+|+.||.+|+-.+.+.+.      ++.+.....-+++.||+..|.-+.|+...+.|-|..
T Consensus        15 vkL~c~~WNke~g----yIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSD   90 (1189)
T KOG2041|consen   15 VKLHCAEWNKESG----YIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSD   90 (1189)
T ss_pred             ceEEEEEEcccCC----eEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccC
Confidence            4567888876444    799999999999998865431      111222334467899999999999999999999999


Q ss_pred             CCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEeC-CCCeEEEEecCCcEEEEECCCC
Q 036314          139 WDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWP-QQETIYSASWDHSVRTWDVEMG  217 (347)
Q Consensus       139 ~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~l~s~s~dg~v~vwd~~~~  217 (347)
                      .+|-|.+|-+-.+....+..                       -......|.++.|. +|..++....||.|.+=.+..+
T Consensus        91 t~GlIiVWmlykgsW~EEMi-----------------------NnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGN  147 (1189)
T KOG2041|consen   91 TSGLIIVWMLYKGSWCEEMI-----------------------NNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGN  147 (1189)
T ss_pred             CCceEEEEeeecccHHHHHh-----------------------hCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccc
Confidence            99999999765432110000                       00122457788884 7778888888888776544332


Q ss_pred             ceeeeeeeCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCC----CeEE----ecCCCCCeeEEEeC--------
Q 036314          218 KDLSDIFCGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSA----PVFQ----FSSHNSWISACKWH--------  281 (347)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~----~~~~----~~~h~~~v~~v~~s--------  281 (347)
                      +.-.+-..+.....+.++++ ...+..+-..|.+++||.......+    ....    ++.....|..+.|.        
T Consensus       148 RIwgKeLkg~~l~hv~ws~D-~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~  226 (1189)
T KOG2041|consen  148 RIWGKELKGQLLAHVLWSED-LEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVP  226 (1189)
T ss_pred             eecchhcchheccceeeccc-HHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCC
Confidence            21111111112234455444 3455567778999999965321000    0011    11111124444443        


Q ss_pred             CCCCeEEEEEeCCCcEEEEEcCC-CccceeecCCCCeEEEEeec-CCCEEEEccCC
Q 036314          282 NKSWFHLISASYDGKVMLWDLRT-AWPLSVIDSHKDKVLCADWW-RGDSVISGGVD  335 (347)
Q Consensus       282 ~~~~~~l~s~s~D~~i~lwd~~~-~~~~~~~~~h~~~v~~~~~~-~~~~l~s~s~D  335 (347)
                      |+.+ .||.+-.+|.+.|-.-.. .+|+..-.+  -.+.+..|+ +|..||.+|.|
T Consensus       227 pdrP-~lavcy~nGr~QiMR~eND~~Pvv~dtg--m~~vgakWnh~G~vLAvcG~~  279 (1189)
T KOG2041|consen  227 PDRP-RLAVCYANGRMQIMRSENDPEPVVVDTG--MKIVGAKWNHNGAVLAVCGND  279 (1189)
T ss_pred             CCCC-EEEEEEcCceehhhhhcCCCCCeEEecc--cEeecceecCCCcEEEEccCc
Confidence            4554 599999999998875443 333332223  567888896 57788888765

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.64  E-value=0.00016  Score=62.39  Aligned_cols=276  Identities=12%  Similarity=0.165  Sum_probs=155.6

Q ss_pred             CeEEEEcCC---Ce-EEEEeeccCCceEEEEEeecCCCceEEEEEcc---CCCcEEEEeccc--cccccCccccceeeee
Q 036314           45 NLGRVWKAG---GV-CTHILEGHCGAVSSVNIIKSDGLKYVTVATAS---KDQTLRLWKFDA--EELVNHPKKIRSFKIL  115 (347)
Q Consensus        45 ~~i~iw~~~---~~-~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s---~Dg~v~~wd~~~--~~~~~~~~~~~~~~~~  115 (347)
                      .-|++|++.   |. ....+..+.+.++-|+|.++..    .|.++-   .+|.|..|.++.  +++...     ....+
T Consensus        16 ~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~----~LY~v~~~~~~ggvaay~iD~~~G~Lt~l-----n~~~~   86 (346)
T COG2706          16 QGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQR----HLYVVNEPGEEGGVAAYRIDPDDGRLTFL-----NRQTL   86 (346)
T ss_pred             CceEEEEEeCcccccchhhhccccCCCceEEECCCCC----EEEEEEecCCcCcEEEEEEcCCCCeEEEe-----ecccc
Confidence            468899864   22 2223445667778899988543    455553   357788888874  433211     01122


Q ss_pred             eccccceEEEEEeCCCCEEEEeeCC-CcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEe
Q 036314          116 RGHKASVHSIAAETSGNMVCSGSWD-CTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW  194 (347)
Q Consensus       116 ~~h~~~V~~v~~s~~~~~l~sgs~D-g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  194 (347)
                      .+  .+-.-++++++|+++++++.. |.|.++.+.............+....         +.-.+.-..|   +...-+
T Consensus        87 ~g--~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~---------~p~~rQ~~~h---~H~a~~  152 (346)
T COG2706          87 PG--SPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGS---------GPHERQESPH---VHSANF  152 (346)
T ss_pred             CC--CCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCC---------CCCccccCCc---cceeee
Confidence            23  223668999999999988764 78999988654322221111110000         0000111122   222333


Q ss_pred             -CCCCeEEEEecC-CcEEEEECCCCceee----eeeeCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCC-CCCCCeEE
Q 036314          195 -PQQETIYSASWD-HSVRTWDVEMGKDLS----DIFCGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKP-GTSAPVFQ  267 (347)
Q Consensus       195 -~~~~~l~s~s~d-g~v~vwd~~~~~~~~----~~~~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~-~~~~~~~~  267 (347)
                       |++++|++.... -.|.+|++..+....    .+..+....-+.|+|++.-..+.+-.+++|.+|..... +....++.
T Consensus       153 tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~  232 (346)
T COG2706         153 TPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQT  232 (346)
T ss_pred             CCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeee
Confidence             677787766332 258899998775432    22334567789998877655566777999999987653 11111211


Q ss_pred             e---c---CCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCc-ccee---ecCCCCeEEEEeecC-CCEEEEccC-C
Q 036314          268 F---S---SHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAW-PLSV---IDSHKDKVLCADWWR-GDSVISGGV-D  335 (347)
Q Consensus       268 ~---~---~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~-~~~~---~~~h~~~v~~~~~~~-~~~l~s~s~-D  335 (347)
                      +   .   ....+..++..+|+|+.+-|+=-....|-++.+.... .+..   ...|.-.-+...+++ |+.|+.++. +
T Consensus       233 i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~s  312 (346)
T COG2706         233 IDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKS  312 (346)
T ss_pred             eccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCC
Confidence            1   1   1234678899999997533333345588888776531 1221   122222257778865 667777775 4


Q ss_pred             ceEEEeec
Q 036314          336 SKLCVSSG  343 (347)
Q Consensus       336 ~~v~vw~~  343 (347)
                      .+|.|++-
T Consensus       313 d~i~vf~~  320 (346)
T COG2706         313 DNITVFER  320 (346)
T ss_pred             CcEEEEEE
Confidence            56777653

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.63  E-value=8.8e-08  Score=56.26  Aligned_cols=39  Identities=28%  Similarity=0.622  Sum_probs=34.8

Q ss_pred             CeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEe
Q 036314           54 GVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWK   96 (347)
Q Consensus        54 ~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd   96 (347)
                      +++++.+.+|++.|.+|+|+|++    ..|++++.|++|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~----~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDG----NFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTS----SEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEeccc----ccceeeCCCCEEEEEC
Confidence            35788999999999999999964    3799999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.62  E-value=5.7e-05  Score=68.83  Aligned_cols=260  Identities=14%  Similarity=0.050  Sum_probs=140.0

Q ss_pred             CCEEEEEecCCeEEEEcC-CCeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceee
Q 036314           35 PGFILTGCYDNLGRVWKA-GGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFK  113 (347)
Q Consensus        35 ~~~l~sg~~d~~i~iw~~-~~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~  113 (347)
                      ++.++.++.++.+..+|. .|+.+..+.-...........  +    ..++.++.|+.+..+|..+++..-..       
T Consensus        65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v~--~----~~v~v~~~~g~l~ald~~tG~~~W~~-------  131 (377)
T TIGR03300        65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGAD--G----GLVFVGTEKGEVIALDAEDGKELWRA-------  131 (377)
T ss_pred             CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEEc--C----CEEEEEcCCCEEEEEECCCCcEeeee-------
Confidence            567888889999999995 576655443332211222221  2    24677889999999998877642110       


Q ss_pred             eeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEE
Q 036314          114 ILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVV  193 (347)
Q Consensus       114 ~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~  193 (347)
                      .+   ...+.+...- .+..++.++.|+.+..||.++++...+..      ..          .....+.....+    .
T Consensus       132 ~~---~~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~------~~----------~~~~~~~~~~sp----~  187 (377)
T TIGR03300       132 KL---SSEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYS------RV----------TPALTLRGSASP----V  187 (377)
T ss_pred             cc---CceeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEc------cC----------CCceeecCCCCC----E
Confidence            01   1112211111 24466667889999999987654311100      00          000000000011    1


Q ss_pred             eCCCCeEEEEecCCcEEEEECCCCceeeeeeeCee-----------e-EEEEeeCCCCcEEEEecCCCcEEEEeCCCCCC
Q 036314          194 WPQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKA-----------L-NCIDIGGEGSALIAAGGSDPILRIWDPRKPGT  261 (347)
Q Consensus       194 ~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~-----------~-~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~  261 (347)
                      . .++.++.+..++.+..+|.++++.+-......+           + ....+  .++ .+..++.++.++.||++..+ 
T Consensus       188 ~-~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~--~~~-~vy~~~~~g~l~a~d~~tG~-  262 (377)
T TIGR03300       188 I-ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV--DGG-QVYAVSYQGRVAALDLRSGR-  262 (377)
T ss_pred             E-ECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE--ECC-EEEEEEcCCEEEEEECCCCc-
Confidence            1 134677778889999999988875432211100           0 01111  122 45566778999999986432 


Q ss_pred             CCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecCCCCeEE-EEeecCCCEEEEccCCceEEE
Q 036314          262 SAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKVL-CADWWRGDSVISGGVDSKLCV  340 (347)
Q Consensus       262 ~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h~~~v~-~~~~~~~~~l~s~s~D~~v~v  340 (347)
                        .+.... ... ......  .+. .+..++.||.+..+|..+++.+-....-.+... +... .+..|..++.||.|.+
T Consensus       263 --~~W~~~-~~~-~~~p~~--~~~-~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i-~g~~l~~~~~~G~l~~  334 (377)
T TIGR03300       263 --VLWKRD-ASS-YQGPAV--DDN-RLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV-VGGYLVVGDFEGYLHW  334 (377)
T ss_pred             --EEEeec-cCC-ccCceE--eCC-EEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE-ECCEEEEEeCCCEEEE
Confidence              122222 111 112222  233 477788999999999998875533321111111 1111 3667888889999998


Q ss_pred             eecc
Q 036314          341 SSGV  344 (347)
Q Consensus       341 w~~~  344 (347)
                      ++..
T Consensus       335 ~d~~  338 (377)
T TIGR03300       335 LSRE  338 (377)
T ss_pred             EECC
Confidence            8753

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.57  E-value=2e-07  Score=79.10  Aligned_cols=161  Identities=14%  Similarity=0.164  Sum_probs=110.8

Q ss_pred             CEEEEEecCCeEEEEcCCCeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeee
Q 036314           36 GFILTGCYDNLGRVWKAGGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKIL  115 (347)
Q Consensus        36 ~~l~sg~~d~~i~iw~~~~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~  115 (347)
                      ++-++.|.+-.|-+=|..+...+.|. ....|.++.|...++    .|..|...|.|-..|+.....   -+. .+...+
T Consensus       225 gyhfs~G~sqqv~L~nvetg~~qsf~-sksDVfAlQf~~s~n----Lv~~GcRngeI~~iDLR~rnq---G~~-~~a~rl  295 (425)
T KOG2695|consen  225 GYHFSVGLSQQVLLTNVETGHQQSFQ-SKSDVFALQFAGSDN----LVFNGCRNGEIFVIDLRCRNQ---GNG-WCAQRL  295 (425)
T ss_pred             eeeecccccceeEEEEeecccccccc-cchhHHHHHhcccCC----eeEecccCCcEEEEEeeeccc---CCC-cceEEE
Confidence            34466667777777776554545555 556799999987554    588999999999999864311   111 122222


Q ss_pred             eccccceEEEEEeC-CCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEe
Q 036314          116 RGHKASVHSIAAET-SGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW  194 (347)
Q Consensus       116 ~~h~~~V~~v~~s~-~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  194 (347)
                       -|...|+++..-. +++.|.+.+.+|+|++||++-..+                      +.-+.++.||...-.-+-+
T Consensus       296 -yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~----------------------~~~V~qYeGHvN~~a~l~~  352 (425)
T KOG2695|consen  296 -YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKC----------------------KKSVMQYEGHVNLSAYLPA  352 (425)
T ss_pred             -EcCcchhhhhhhccccceEeeccCcCceeEeeehhhhc----------------------ccceeeeeccccccccccc
Confidence             3889999997655 778999999999999999864321                      1225567777533222211


Q ss_pred             ---CCCCeEEEEecCCcEEEEECCCCceeeeeeeCee
Q 036314          195 ---PQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKA  228 (347)
Q Consensus       195 ---~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~  228 (347)
                         +....+++++.|...|+|.+..+..+.++.....
T Consensus       353 ~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~s  389 (425)
T KOG2695|consen  353 HVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPYS  389 (425)
T ss_pred             ccccccceEEEccCeeEEEEEecccCceeeccCCCCc
Confidence               3456788999999999999999988887765543

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.55  E-value=5.7e-07  Score=76.44  Aligned_cols=137  Identities=11%  Similarity=0.169  Sum_probs=93.9

Q ss_pred             cceEEEEeC-CCCeEEEEecCCcEEEEECCCC-----ceeeeeeeCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCC
Q 036314          187 QCVSSVVWP-QQETIYSASWDHSVRTWDVEMG-----KDLSDIFCGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPG  260 (347)
Q Consensus       187 ~~v~~~~~~-~~~~l~s~s~dg~v~vwd~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~  260 (347)
                      ..|.++.|. .++.++.|..+|.|-..|++..     .+...+.++..++++..-.-+...+++.+-+|+|++||+|...
T Consensus       253 sDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K  332 (425)
T KOG2695|consen  253 SDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATK  332 (425)
T ss_pred             hhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhh
Confidence            345555554 3678889999999999999865     2344455666677765543234466667779999999998654


Q ss_pred             CCCCeEEecCCCCCeeEEE--eCCCCCeEEEEEeCCCcEEEEEcCCCccceeec----CCCCeEEEEeec
Q 036314          261 TSAPVFQFSSHNSWISACK--WHNKSWFHLISASYDGKVMLWDLRTAWPLSVID----SHKDKVLCADWW  324 (347)
Q Consensus       261 ~~~~~~~~~~h~~~v~~v~--~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~----~h~~~v~~~~~~  324 (347)
                      ....+.++.||-+.-.-+-  ..+.. ..+++++.|.-.|||.++.+..+.++.    .-...+++++|.
T Consensus       333 ~~~~V~qYeGHvN~~a~l~~~v~~ee-g~I~s~GdDcytRiWsl~~ghLl~tipf~~s~~e~d~~sv~~~  401 (425)
T KOG2695|consen  333 CKKSVMQYEGHVNLSAYLPAHVKEEE-GSIFSVGDDCYTRIWSLDSGHLLCTIPFPYSASEVDIPSVAFD  401 (425)
T ss_pred             cccceeeeeccccccccccccccccc-ceEEEccCeeEEEEEecccCceeeccCCCCccccccccceehh
Confidence            4445788999976433222  33444 368889999999999999887665542    223456777773

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.55  E-value=0.00037  Score=70.09  Aligned_cols=276  Identities=14%  Similarity=0.152  Sum_probs=148.7

Q ss_pred             EEEEEecCC--eEEEEcCC--C--eEEEEee-----ccCCceEEEEEeecCCCceEEEEEccCCCcEEEE----eccccc
Q 036314           37 FILTGCYDN--LGRVWKAG--G--VCTHILE-----GHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLW----KFDAEE  101 (347)
Q Consensus        37 ~l~sg~~d~--~i~iw~~~--~--~~~~~l~-----~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~w----d~~~~~  101 (347)
                      +++++....  .|.+....  +  ..+..+.     ...+.|.++.+.++..    .++.+..+|.|-+.    +....+
T Consensus        37 ~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~----~l~~~~~~Gdi~~~~~~~~~~~~~  112 (928)
T PF04762_consen   37 YFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSE----SLCIALASGDIILVREDPDPDEDE  112 (928)
T ss_pred             EEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCC----cEEEEECCceEEEEEccCCCCCce
Confidence            566665554  34454322  2  1233333     3457899999888543    47778888999998    433321


Q ss_pred             cccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCC----------CC--ccceeeeccCCCcc
Q 036314          102 LVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDA----------AG--NQVSIKKRKGNNQV  169 (347)
Q Consensus       102 ~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~----------~~--~~~~~~~~~~~~~~  169 (347)
                                ......-..+|.+++||||+.+++-...++++.+-+.. .+.          .+  ..+.+  ..+   -
T Consensus       113 ----------~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~-fd~i~E~~l~~~~~~~~~~VsV--GWG---k  176 (928)
T PF04762_consen  113 ----------IEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRD-FDPISEVPLDSDDFGESKHVSV--GWG---K  176 (928)
T ss_pred             ----------eEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEecc-ceEEEEeecCccccCCCceeee--ccC---c
Confidence                      12223347789999999999999988888888876422 110          00  01110  000   0


Q ss_pred             ccccccccc-----------------cccccCCccceEEEEe-CCCCeEEEEec------CCcEEEEECCCCceeeeeee
Q 036314          170 EEPQLEGEA-----------------ISTLVGHTQCVSSVVW-PQQETIYSASW------DHSVRTWDVEMGKDLSDIFC  225 (347)
Q Consensus       170 ~~~~~~~~~-----------------~~~~~~h~~~v~~~~~-~~~~~l~s~s~------dg~v~vwd~~~~~~~~~~~~  225 (347)
                      .+.++.|+.                 ...+. +.+.-..++| .||++++..+.      -+.+|||+-+ |.....-..
T Consensus       177 KeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~  254 (928)
T PF04762_consen  177 KETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEP  254 (928)
T ss_pred             ccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEecccc
Confidence            011111111                 11222 3334456888 48888877664      2579999844 543322211


Q ss_pred             -CeeeEEEEeeCCCCcEEEEecC---CCcEEEEeCCCCCCCCCeEEec--CCCCCeeEEEeCCCCCeEEEEEeCCCcEEE
Q 036314          226 -GKALNCIDIGGEGSALIAAGGS---DPILRIWDPRKPGTSAPVFQFS--SHNSWISACKWHNKSWFHLISASYDGKVML  299 (347)
Q Consensus       226 -~~~~~~~~~~~~~~~~la~~~~---d~~i~iwd~~~~~~~~~~~~~~--~h~~~v~~v~~s~~~~~~l~s~s~D~~i~l  299 (347)
                       ..--.+++|-| .+++||+.-.   ...|.+|..... +. -.+.+.  .....|..+.||+++. .||.--.| .|.+
T Consensus       255 v~gLe~~l~WrP-sG~lIA~~q~~~~~~~VvFfErNGL-rh-geF~l~~~~~~~~v~~l~Wn~ds~-iLAv~~~~-~vqL  329 (928)
T PF04762_consen  255 VDGLEGALSWRP-SGNLIASSQRLPDRHDVVFFERNGL-RH-GEFTLRFDPEEEKVIELAWNSDSE-ILAVWLED-RVQL  329 (928)
T ss_pred             CCCccCCccCCC-CCCEEEEEEEcCCCcEEEEEecCCc-Ee-eeEecCCCCCCceeeEEEECCCCC-EEEEEecC-CceE
Confidence             11124577755 4567776532   467778864321 11 123333  3455789999999985 46665544 4999


Q ss_pred             EEcCCC--ccceeecC-CCCeEEEEeecC--CCEEEEccCCceEE
Q 036314          300 WDLRTA--WPLSVIDS-HKDKVLCADWWR--GDSVISGGVDSKLC  339 (347)
Q Consensus       300 wd~~~~--~~~~~~~~-h~~~v~~~~~~~--~~~l~s~s~D~~v~  339 (347)
                      |-..+-  -.-+.+.. ....+..+.|+|  ..+|.....++.+.
T Consensus       330 Wt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~  374 (928)
T PF04762_consen  330 WTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYE  374 (928)
T ss_pred             EEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEE
Confidence            976542  11122221 122344477765  33444444444443

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.54  E-value=0.00057  Score=60.75  Aligned_cols=262  Identities=8%  Similarity=0.001  Sum_probs=132.1

Q ss_pred             CeEEEEcCC-CeEEEEee-ccCCceEEEEEeecCCCceEEEEEcc---------CCCcEEEEeccccccccCcccc-cee
Q 036314           45 NLGRVWKAG-GVCTHILE-GHCGAVSSVNIIKSDGLKYVTVATAS---------KDQTLRLWKFDAEELVNHPKKI-RSF  112 (347)
Q Consensus        45 ~~i~iw~~~-~~~~~~l~-~h~~~V~~v~~~~~~~~~~~~l~s~s---------~Dg~v~~wd~~~~~~~~~~~~~-~~~  112 (347)
                      ++|.+.|.. .+.+..+. |....  .+ ++|++.   ...++.+         .+..|.+||..+.+........ .+.
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~~P~--~~-~spDg~---~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~  100 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGFLPN--PV-VASDGS---FFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPR  100 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccCCCc--ee-ECCCCC---EEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCch
Confidence            788888864 34444444 22222  23 677543   2334445         6789999999877643211000 000


Q ss_pred             eeeeccccceEEEEEeCCCCEEEEee-C-CCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceE
Q 036314          113 KILRGHKASVHSIAAETSGNMVCSGS-W-DCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVS  190 (347)
Q Consensus       113 ~~~~~h~~~V~~v~~s~~~~~l~sgs-~-Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~  190 (347)
                        +. ....-..+++++||++++... . +..|.+.|+........                         +.- .++..
T Consensus       101 --~~-~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~e-------------------------i~v-p~~~~  151 (352)
T TIGR02658       101 --FL-VGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRM-------------------------MDV-PDCYH  151 (352)
T ss_pred             --hh-ccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEE-------------------------EeC-CCCcE
Confidence              00 011223578999999998766 3 68999999886532111                         100 00111


Q ss_pred             EEEeCCCCeEEEEecCCcEEEEECCC-Cce-eee--eeeC--eee-EEEEeeCCCCcEEEEecCCCcEEEEeCCCCCC--
Q 036314          191 SVVWPQQETIYSASWDHSVRTWDVEM-GKD-LSD--IFCG--KAL-NCIDIGGEGSALIAAGGSDPILRIWDPRKPGT--  261 (347)
Q Consensus       191 ~~~~~~~~~l~s~s~dg~v~vwd~~~-~~~-~~~--~~~~--~~~-~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~--  261 (347)
                      -...++.... .-+.||......+.. ++. ...  ++..  .++ ..-.+.+.++..+....+ |+|.+.|+...+.  
T Consensus       152 vy~t~e~~~~-~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~  229 (352)
T TIGR02658       152 IFPTANDTFF-MHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKF  229 (352)
T ss_pred             EEEecCCccE-EEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCccee
Confidence            0111111111 112333333322211 110 000  1111  000 000123323444444444 9999999643211  


Q ss_pred             CCCeEEecC-------CCCCeeEEEeCCCCCeEEEEEe---------CCCcEEEEEcCCCccceeecCCCCeEEEEeecC
Q 036314          262 SAPVFQFSS-------HNSWISACKWHNKSWFHLISAS---------YDGKVMLWDLRTAWPLSVIDSHKDKVLCADWWR  325 (347)
Q Consensus       262 ~~~~~~~~~-------h~~~v~~v~~s~~~~~~l~s~s---------~D~~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~  325 (347)
                      ..+...+..       ......-++++|++.++++...         ..+.|.++|..+++.+..+.- ...++.+++++
T Consensus       230 ~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~  308 (352)
T TIGR02658       230 LPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQ  308 (352)
T ss_pred             cceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEECC
Confidence            111111111       1122344899999987655442         125799999999988887653 34789999985


Q ss_pred             -CC-EEE-EccCCceEEEeecc
Q 036314          326 -GD-SVI-SGGVDSKLCVSSGV  344 (347)
Q Consensus       326 -~~-~l~-s~s~D~~v~vw~~~  344 (347)
                       ++ +|. +...++.|.|.+.-
T Consensus       309 Dgkp~lyvtn~~s~~VsViD~~  330 (352)
T TIGR02658       309 DAKPLLYALSTGDKTLYIFDAE  330 (352)
T ss_pred             CCCeEEEEeCCCCCcEEEEECc
Confidence             55 544 54468889888764

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.52  E-value=3.4e-06  Score=71.79  Aligned_cols=215  Identities=13%  Similarity=0.216  Sum_probs=127.4

Q ss_pred             ccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEeC-CC
Q 036314          119 KASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWP-QQ  197 (347)
Q Consensus       119 ~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~  197 (347)
                      .+-|.+|.|..+|.+|++|..+|.|-++.-+.... +...    .....+..++  +...+.++. -...|..+.|- ++
T Consensus        25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~-~ey~----~~t~fqshep--EFDYLkSle-ieEKinkIrw~~~~   96 (433)
T KOG1354|consen   25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYK-GEYN----FQTEFQSHEP--EFDYLKSLE-IEEKINKIRWLDDG   96 (433)
T ss_pred             hcceeeEEeecccceEeecCCCCeEEEeecccccc-ccee----eeeeeeccCc--ccchhhhhh-hhhhhhhceecCCC
Confidence            44577899999999999999999999996443211 0000    0000000000  001111111 12356667773 32


Q ss_pred             --CeEEEEecCCcEEEEECCCCceee---------------eee----------------------eCeeeEEEEeeCCC
Q 036314          198 --ETIYSASWDHSVRTWDVEMGKDLS---------------DIF----------------------CGKALNCIDIGGEG  238 (347)
Q Consensus       198 --~~l~s~s~dg~v~vwd~~~~~~~~---------------~~~----------------------~~~~~~~~~~~~~~  238 (347)
                        ..++....|++|++|-+.....-.               .+.                      +..-++.+.+.++.
T Consensus        97 n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~  176 (433)
T KOG1354|consen   97 NLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDK  176 (433)
T ss_pred             CccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCcc
Confidence              346666789999999874321100               000                      00124456665544


Q ss_pred             CcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCC-----CCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccc----e
Q 036314          239 SALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHN-----SWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPL----S  309 (347)
Q Consensus       239 ~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~-----~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~----~  309 (347)
                      . .+++ ..|-.|.+|.+....+.-.+..+.++.     .-|++..|+|..-.+++-.|.-|+|+|-|+|.....    +
T Consensus       177 E-t~lS-ADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsK  254 (433)
T KOG1354|consen  177 E-TFLS-ADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSK  254 (433)
T ss_pred             c-eEee-ccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhh
Confidence            3 4444 468899999987654443444444443     347888999987778888899999999999953211    1


Q ss_pred             e------------ecCCCCeEEEEeecC-CCEEEEccCCceEEEeecc
Q 036314          310 V------------IDSHKDKVLCADWWR-GDSVISGGVDSKLCVSSGV  344 (347)
Q Consensus       310 ~------------~~~h~~~v~~~~~~~-~~~l~s~s~D~~v~vw~~~  344 (347)
                      .            |.+--..|..+.|++ |++|+|.+. -+|+||+.+
T Consensus       255 lfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~n  301 (433)
T KOG1354|consen  255 LFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLN  301 (433)
T ss_pred             hhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEecc
Confidence            1            111224567888974 788887553 689999975

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.48  E-value=5.1e-05  Score=63.40  Aligned_cols=191  Identities=10%  Similarity=0.077  Sum_probs=103.2

Q ss_pred             eEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEeCC-----
Q 036314          122 VHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWPQ-----  196 (347)
Q Consensus       122 V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-----  196 (347)
                      -+.++||||+.+||.+...|+|+++|+.....-     .....           ....   ..-..+|.++.|.+     
T Consensus        46 WRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf-----~I~p~-----------~~~~---~d~~~Aiagl~Fl~~~~s~  106 (282)
T PF15492_consen   46 WRKLAWSPDCTLLAYAESTGTIRVFDLMGSELF-----VIPPA-----------MSFP---GDLSDAIAGLIFLEYKKSA  106 (282)
T ss_pred             heEEEECCCCcEEEEEcCCCeEEEEecccceeE-----EcCcc-----------cccC---CccccceeeeEeecccccc
Confidence            467899999999999999999999998642110     00000           0000   01234566666621     


Q ss_pred             --CCeEEEEecCCcEEEEECCCC-----ceeeeeee----CeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCe
Q 036314          197 --QETIYSASWDHSVRTWDVEMG-----KDLSDIFC----GKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPV  265 (347)
Q Consensus       197 --~~~l~s~s~dg~v~vwd~~~~-----~~~~~~~~----~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~  265 (347)
                        ...|+...++|.++-|-+..+     +....+..    ...+.++.+++....+++.|.....-..+           
T Consensus       107 ~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s-----------  175 (282)
T PF15492_consen  107 QWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMS-----------  175 (282)
T ss_pred             ccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccc-----------
Confidence              125777889988887765321     22223322    34677888876654444444333210000           


Q ss_pred             EEecCCCCCeeEEEeCCCCCe-EEEEEeCCCcE------EEEEcCCCccceee-cCCCCeEEEEeecC-CCEEEEccCCc
Q 036314          266 FQFSSHNSWISACKWHNKSWF-HLISASYDGKV------MLWDLRTAWPLSVI-DSHKDKVLCADWWR-GDSVISGGVDS  336 (347)
Q Consensus       266 ~~~~~h~~~v~~v~~s~~~~~-~l~s~s~D~~i------~lwd~~~~~~~~~~-~~h~~~v~~~~~~~-~~~l~s~s~D~  336 (347)
                         .+-...+++-+.-.+.++ ..++...|+..      .+|.+-+.. .... ....+.|..|..|| |+.||+...+|
T Consensus       176 ---~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~-~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG  251 (282)
T PF15492_consen  176 ---KASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFK-FFSRQGQEQDGIFKMSLSPDGSLLACIHFSG  251 (282)
T ss_pred             ---cccccCceEEEEcCCCCcEEEccccCccccccccccceeecccee-eeeccccCCCceEEEEECCCCCEEEEEEcCC
Confidence               011112222222222222 23333333321      233322211 1111 22457889999986 77899999999


Q ss_pred             eEEEeecccC
Q 036314          337 KLCVSSGVSI  346 (347)
Q Consensus       337 ~v~vw~~~~~  346 (347)
                      .|.||+.||.
T Consensus       252 ~lsLW~iPsL  261 (282)
T PF15492_consen  252 SLSLWEIPSL  261 (282)
T ss_pred             eEEEEecCcc
Confidence            9999999975

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.47  E-value=0.00011  Score=66.57  Aligned_cols=285  Identities=13%  Similarity=0.130  Sum_probs=148.3

Q ss_pred             ccCCC-CCEEEEEecCCeEEEEcCCC--eEEEEeeccCCceEEEEEeecCCCceEEEEEccC-----------CCcEEEE
Q 036314           30 VDGSN-PGFILTGCYDNLGRVWKAGG--VCTHILEGHCGAVSSVNIIKSDGLKYVTVATASK-----------DQTLRLW   95 (347)
Q Consensus        30 ~~~~~-~~~l~sg~~d~~i~iw~~~~--~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~-----------Dg~v~~w   95 (347)
                      +.+|+ |.||+|==.-| |.+|--..  .+. .| .|.+ |.-+.|+|.    ..+|+|-|.           ...++||
T Consensus       216 v~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~-RF-~Hp~-Vq~idfSP~----EkYLVT~s~~p~~~~~~d~e~~~l~IW  287 (698)
T KOG2314|consen  216 VRWSPKGTYLVTFHKQG-IALWGGESFDRIQ-RF-YHPG-VQFIDFSPN----EKYLVTYSPEPIIVEEDDNEGQQLIIW  287 (698)
T ss_pred             EEecCCceEEEEEeccc-eeeecCccHHHHH-hc-cCCC-ceeeecCCc----cceEEEecCCccccCcccCCCceEEEE
Confidence            45664 67888875555 67885321  121 12 3655 677888883    346776553           2579999


Q ss_pred             eccccccccCccccceeeeeeccccceEE-EEEeCCCCEEEEeeCCCcEEEEecCCCCCCC-ccceeeec------cCCC
Q 036314           96 KFDAEELVNHPKKIRSFKILRGHKASVHS-IAAETSGNMVCSGSWDCTISLWRTNDSDAAG-NQVSIKKR------KGNN  167 (347)
Q Consensus        96 d~~~~~~~~~~~~~~~~~~~~~h~~~V~~-v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~-~~~~~~~~------~~~~  167 (347)
                      |+.+|.+.+.+.      .+++ ...+.. ..||.|++++|--.. .+|.||+..+..... +.+.+..-      +...
T Consensus       288 DI~tG~lkrsF~------~~~~-~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~  359 (698)
T KOG2314|consen  288 DIATGLLKRSFP------VIKS-PYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSN  359 (698)
T ss_pred             Eccccchhccee------ccCC-CccccceEEeccCCceeEEecc-ceEEEEecCceeeecccccCCccccCcccCCCcc
Confidence            999987543321      1211 222333 479999999986555 578899876532211 00100000      0000


Q ss_pred             ccccc-----c----------ccccccccccCCccceEEEEeC-CCCeEEEE----------ecCCcEEEEECCCC-cee
Q 036314          168 QVEEP-----Q----------LEGEAISTLVGHTQCVSSVVWP-QQETIYSA----------SWDHSVRTWDVEMG-KDL  220 (347)
Q Consensus       168 ~~~~~-----~----------~~~~~~~~~~~h~~~v~~~~~~-~~~~l~s~----------s~dg~v~vwd~~~~-~~~  220 (347)
                      .+...     +          ..+..+++..-|+-.-..+.|. +|++|+.-          +.=..+.|+.++.. -++
T Consensus       360 llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpv  439 (698)
T KOG2314|consen  360 LLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPV  439 (698)
T ss_pred             eEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCc
Confidence            00000     0          0111122222222222345563 45555421          11112444444332 122


Q ss_pred             eeeeeCeeeEEEEeeCCCCcEEEEecC--CCcEEEEeCC-CCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEE---eCC
Q 036314          221 SDIFCGKALNCIDIGGEGSALIAAGGS--DPILRIWDPR-KPGTSAPVFQFSSHNSWISACKWHNKSWFHLISA---SYD  294 (347)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~la~~~~--d~~i~iwd~~-~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~---s~D  294 (347)
                      ..+.....+-..++.|.+..+.+..+.  ..++.+|-+. ....+..+..+.  ....+.+-|+|.|.. ++.+   |..
T Consensus       440 e~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d--k~~~N~vfwsPkG~f-vvva~l~s~~  516 (698)
T KOG2314|consen  440 EVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELD--KKFANTVFWSPKGRF-VVVAALVSRR  516 (698)
T ss_pred             eeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhc--ccccceEEEcCCCcE-EEEEEecccc
Confidence            333334456667787776665444433  4688899876 333333344443  245677899999975 4444   357


Q ss_pred             CcEEEEEcCCCcccee-ecCCCCeEEEEeecC-CCEEEEccC
Q 036314          295 GKVMLWDLRTAWPLSV-IDSHKDKVLCADWWR-GDSVISGGV  334 (347)
Q Consensus       295 ~~i~lwd~~~~~~~~~-~~~h~~~v~~~~~~~-~~~l~s~s~  334 (347)
                      |.+..+|..-.....+ .-.|- .-..+.|-| |+++++++.
T Consensus       517 g~l~F~D~~~a~~k~~~~~eh~-~at~veWDPtGRYvvT~ss  557 (698)
T KOG2314|consen  517 GDLEFYDTDYADLKDTASPEHF-AATEVEWDPTGRYVVTSSS  557 (698)
T ss_pred             cceEEEecchhhhhhccCcccc-ccccceECCCCCEEEEeee
Confidence            8999999974222211 12232 346678855 888888774

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.46  E-value=1e-06  Score=77.43  Aligned_cols=190  Identities=16%  Similarity=0.258  Sum_probs=126.5

Q ss_pred             CCCcCCceeeccCCCCCEEEEEecCCeEEEEcCC---C-eEEEEeeccCCceEEEEEeecCCCceEEEEEccC-CCcEEE
Q 036314           20 PSLHDDWVSAVDGSNPGFILTGCYDNLGRVWKAG---G-VCTHILEGHCGAVSSVNIIKSDGLKYVTVATASK-DQTLRL   94 (347)
Q Consensus        20 ~~~h~~~v~~~~~~~~~~l~sg~~d~~i~iw~~~---~-~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~-Dg~v~~   94 (347)
                      .-.|.+-|+-+..+-..++.+++.||.++.|...   | ..++.+..|.+.|.+++.+.    ++....|.+. |..+|+
T Consensus         5 symhrd~i~hv~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~----dg~L~~Sv~d~Dhs~Kv   80 (558)
T KOG0882|consen    5 SYMHRDVITHVFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSY----DGWLFRSVEDPDHSVKV   80 (558)
T ss_pred             hhcccceeeeEeeehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccc----cceeEeeccCcccceeE
Confidence            4479999999988878899999999999999753   3 34567889999998888776    4456788777 999999


Q ss_pred             Eecccccccc------Ccc--------------------------------c-cceeeeeeccccceEEEEEeCCCCEEE
Q 036314           95 WKFDAEELVN------HPK--------------------------------K-IRSFKILRGHKASVHSIAAETSGNMVC  135 (347)
Q Consensus        95 wd~~~~~~~~------~~~--------------------------------~-~~~~~~~~~h~~~V~~v~~s~~~~~l~  135 (347)
                      +|+.+-....      .|+                                . .+....-.-|..+|.++.+.+.++.++
T Consensus        81 fDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~v  160 (558)
T KOG0882|consen   81 FDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAV  160 (558)
T ss_pred             EEeeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeecccccee
Confidence            9976543221      000                                0 011111134899999999999999999


Q ss_pred             EeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEe-CCCCeEEEEecCCcEEEEEC
Q 036314          136 SGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDV  214 (347)
Q Consensus       136 sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~l~s~s~dg~v~vwd~  214 (347)
                      |....|.|.-|..+..-...+.      ..+..+..    .+.+..+.-......++.+ +++..+.+-+.|..|+++++
T Consensus       161 SiD~~gmVEyWs~e~~~qfPr~------~l~~~~K~----eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~  230 (558)
T KOG0882|consen  161 SIDISGMVEYWSAEGPFQFPRT------NLNFELKH----ETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVF  230 (558)
T ss_pred             eccccceeEeecCCCcccCccc------cccccccc----cchhhcccccccCccceEEccccCcccccCcccEEEEEEe
Confidence            9999999999987631000000      00000000    0011111111223345555 67888988899999999999


Q ss_pred             CCCceeeee
Q 036314          215 EMGKDLSDI  223 (347)
Q Consensus       215 ~~~~~~~~~  223 (347)
                      ++++.+..+
T Consensus       231 KtGklvqei  239 (558)
T KOG0882|consen  231 KTGKLVQEI  239 (558)
T ss_pred             ccchhhhhh
Confidence            999876554

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.45  E-value=0.00035  Score=64.28  Aligned_cols=230  Identities=8%  Similarity=-0.007  Sum_probs=116.7

Q ss_pred             eEEEE--cCCCeEEEEeeccCCceEEEEEeecCCCceEEEEEccC--CCcEEEEeccccccccCccccceeeeeeccccc
Q 036314           46 LGRVW--KAGGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASK--DQTLRLWKFDAEELVNHPKKIRSFKILRGHKAS  121 (347)
Q Consensus        46 ~i~iw--~~~~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~--Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~  121 (347)
                      .-+||  |..|...+.+.... ....-.|+|++..  ..+++...  +..|.++|+.+++.          ..+....+.
T Consensus       168 ~~~l~~~d~dg~~~~~~~~~~-~~~~p~wSpDG~~--~i~y~s~~~~~~~Iyv~dl~tg~~----------~~lt~~~g~  234 (419)
T PRK04043        168 KSNIVLADYTLTYQKVIVKGG-LNIFPKWANKEQT--AFYYTSYGERKPTLYKYNLYTGKK----------EKIASSQGM  234 (419)
T ss_pred             cceEEEECCCCCceeEEccCC-CeEeEEECCCCCc--EEEEEEccCCCCEEEEEECCCCcE----------EEEecCCCc
Confidence            34555  55565444444333 6678889996531  12222222  35688888766532          122223444


Q ss_pred             eEEEEEeCCCCEEE-EeeCCC--cEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEe-CCC
Q 036314          122 VHSIAAETSGNMVC-SGSWDC--TISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW-PQQ  197 (347)
Q Consensus       122 V~~v~~s~~~~~l~-sgs~Dg--~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~  197 (347)
                      ....+|+|||+.++ +.+.++  .|.++++..+..                          +.+..+........| |++
T Consensus       235 ~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~--------------------------~~LT~~~~~d~~p~~SPDG  288 (419)
T PRK04043        235 LVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTL--------------------------TQITNYPGIDVNGNFVEDD  288 (419)
T ss_pred             EEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcE--------------------------EEcccCCCccCccEECCCC
Confidence            56678999997554 555454  455556543211                          111111111112245 677


Q ss_pred             CeEEEEec-CC--cEEEEECCCCceeeeeeeCeeeEEEEeeCCCCcEEEEecCC--------CcEEEEeCCCCCCCCCeE
Q 036314          198 ETIYSASW-DH--SVRTWDVEMGKDLSDIFCGKALNCIDIGGEGSALIAAGGSD--------PILRIWDPRKPGTSAPVF  266 (347)
Q Consensus       198 ~~l~s~s~-dg--~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~d--------~~i~iwd~~~~~~~~~~~  266 (347)
                      +.|+..+. .+  .|.+.|+.+++.......+..  ...++|++..++.+....        ..|.+.|+....    ..
T Consensus       289 ~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~----~~  362 (419)
T PRK04043        289 KRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDY----IR  362 (419)
T ss_pred             CEEEEEECCCCCceEEEEECCCCCeEeCccCCCc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCC----eE
Confidence            77765553 33  466678877654322222221  236777766555554433        367777876432    23


Q ss_pred             EecCCCCCeeEEEeCCCCCeEEEEEeCCCc--EEEEEcCCCccceeecCCCCeEEEEe
Q 036314          267 QFSSHNSWISACKWHNKSWFHLISASYDGK--VMLWDLRTAWPLSVIDSHKDKVLCAD  322 (347)
Q Consensus       267 ~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~--i~lwd~~~~~~~~~~~~h~~~v~~~~  322 (347)
                      .+.... ......|+|||...+.+....+.  +.+.+++.. ....+....+.+..-+
T Consensus       363 ~LT~~~-~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~-~~~~l~~~~g~~~~p~  418 (419)
T PRK04043        363 RLTANG-VNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYN-KSFLFPLKVGKIQSID  418 (419)
T ss_pred             ECCCCC-CcCCeEECCCCCEEEEEEccCCcEEEEEEecCCC-eeEEeecCCCccCCCC
Confidence            333322 23357899999765454443333  555666543 3333433334444433

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=98.44  E-value=8.5e-05  Score=67.31  Aligned_cols=252  Identities=18%  Similarity=0.243  Sum_probs=132.8

Q ss_pred             eccCCCCCEEEEEecCCeEEEEcCCCeEEEEeeccCCceEEEEEeecCCCceEEEE-----EccCCCcEEEEeccccccc
Q 036314           29 AVDGSNPGFILTGCYDNLGRVWKAGGVCTHILEGHCGAVSSVNIIKSDGLKYVTVA-----TASKDQTLRLWKFDAEELV  103 (347)
Q Consensus        29 ~~~~~~~~~l~sg~~d~~i~iw~~~~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~-----s~s~Dg~v~~wd~~~~~~~  103 (347)
                      ...|+.+..|+.==..+.+.+|+..+...-.-.-|...|+...++|....  ..||     ..+.=..||+|.+..... 
T Consensus       130 ~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~--~~vAvyvPe~kGaPa~vri~~~~~~~~-  206 (566)
T KOG2315|consen  130 VPQFSIDESLAARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEP--PFVAVYVPEKKGAPASVRIYKYPEEGQ-  206 (566)
T ss_pred             ccccccchhhhhhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCC--ceEEEEccCCCCCCcEEEEeccccccc-
Confidence            56677554444333345789998754222222224556777777774322  2233     345556799998763211 


Q ss_pred             cCccccceeeeeeccccceEEEEEeCCCC-EEE--EeeCCC---------cEEEEecCCCCCCCccceeeeccCCCcccc
Q 036314          104 NHPKKIRSFKILRGHKASVHSIAAETSGN-MVC--SGSWDC---------TISLWRTNDSDAAGNQVSIKKRKGNNQVEE  171 (347)
Q Consensus       104 ~~~~~~~~~~~~~~h~~~V~~v~~s~~~~-~l~--sgs~Dg---------~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~  171 (347)
                      ..+   ...++|-  ...=-.+.|++-|. +|+  +.--|.         ++.+.++.                      
T Consensus       207 ~~~---~a~ksFF--kadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~----------------------  259 (566)
T KOG2315|consen  207 HQP---VANKSFF--KADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQ----------------------  259 (566)
T ss_pred             cch---hhhcccc--ccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEec----------------------
Confidence            111   1111221  11112345665553 222  222232         23333322                      


Q ss_pred             ccccccccccccCCccceEEEEeC-CCCeE--EEEecCCcEEEEECCCCceeeeeeeCeeeEEEEeeCCCCcEEEEec--
Q 036314          172 PQLEGEAISTLVGHTQCVSSVVWP-QQETI--YSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEGSALIAAGG--  246 (347)
Q Consensus       172 ~~~~~~~~~~~~~h~~~v~~~~~~-~~~~l--~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~--  246 (347)
                          +.....--.-.++|.++.|+ .+..+  +-|-+--.+.++|++ +..+..+.. .+-+++-|+|.+..++++|.  
T Consensus       260 ----g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~e-gpRN~~~fnp~g~ii~lAGFGN  333 (566)
T KOG2315|consen  260 ----GESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFPE-GPRNTAFFNPHGNIILLAGFGN  333 (566)
T ss_pred             ----CceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCCC-CCccceEECCCCCEEEEeecCC
Confidence                01111111235789999995 55544  445556789999986 455555532 34456667665544444443  


Q ss_pred             CCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEe-C-----CCcEEEEEcCCCccceeecCCCCeEEE
Q 036314          247 SDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISAS-Y-----DGKVMLWDLRTAWPLSVIDSHKDKVLC  320 (347)
Q Consensus       247 ~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s-~-----D~~i~lwd~~~~~~~~~~~~h~~~v~~  320 (347)
                      ..|.+.+||....   +.+..+..-.  -+-+.|+|||.+ ++|+. .     |..++||+.. |..+..-+ .....+.
T Consensus       334 L~G~mEvwDv~n~---K~i~~~~a~~--tt~~eW~PdGe~-flTATTaPRlrvdNg~Kiwhyt-G~~l~~~~-f~sEL~q  405 (566)
T KOG2315|consen  334 LPGDMEVWDVPNR---KLIAKFKAAN--TTVFEWSPDGEY-FLTATTAPRLRVDNGIKIWHYT-GSLLHEKM-FKSELLQ  405 (566)
T ss_pred             CCCceEEEeccch---hhccccccCC--ceEEEEcCCCcE-EEEEeccccEEecCCeEEEEec-Cceeehhh-hhHhHhh
Confidence            2489999998752   2234443332  345899999976 55554 3     7889999996 44444311 1225777


Q ss_pred             Eeec
Q 036314          321 ADWW  324 (347)
Q Consensus       321 ~~~~  324 (347)
                      +.|-
T Consensus       406 v~W~  409 (566)
T KOG2315|consen  406 VEWR  409 (566)
T ss_pred             eeee
Confidence            8885

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.42  E-value=1.7e-05  Score=74.73  Aligned_cols=184  Identities=18%  Similarity=0.158  Sum_probs=120.0

Q ss_pred             cCCceeeccCCCCCEEEEEecCCeEEEEcCCCeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEecccccc
Q 036314           23 HDDWVSAVDGSNPGFILTGCYDNLGRVWKAGGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEEL  102 (347)
Q Consensus        23 h~~~v~~~~~~~~~~l~sg~~d~~i~iw~~~~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~  102 (347)
                      ..+.+++.+++ +.+|+-|..+|.+++.+..+.. .+...|...          +..+.+++|||+||+|.+-.+.+.+.
T Consensus        38 ~~D~is~~av~-~~~~~~GtH~g~v~~~~~~~~~-~~~~~~s~~----------~~~Gey~asCS~DGkv~I~sl~~~~~  105 (846)
T KOG2066|consen   38 QNDAISCCAVH-DKFFALGTHRGAVYLTTCQGNP-KTNFDHSSS----------ILEGEYVASCSDDGKVVIGSLFTDDE  105 (846)
T ss_pred             hhhHHHHHHhh-cceeeeccccceEEEEecCCcc-ccccccccc----------ccCCceEEEecCCCcEEEeeccCCcc
Confidence            56777777764 5789999999999999876654 333334332          22456899999999999998866532


Q ss_pred             ccCccccceeeeeeccccceEEEEEeCC-----CCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCcccccccccc
Q 036314          103 VNHPKKIRSFKILRGHKASVHSIAAETS-----GNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGE  177 (347)
Q Consensus       103 ~~~~~~~~~~~~~~~h~~~V~~v~~s~~-----~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (347)
                               ..+ .....++.+++++|+     .+++++|+.-| +.++.-.   ..+..                    
T Consensus       106 ---------~~~-~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~---wlgnk--------------------  151 (846)
T KOG2066|consen  106 ---------ITQ-YDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERN---WLGNK--------------------  151 (846)
T ss_pred             ---------cee-EecCCcceeEEeccchhhhhhhheeecCcce-EEEehhh---hhcCc--------------------
Confidence                     111 234778999999998     57899999998 7666321   00000                    


Q ss_pred             ccccccCCccceEEEEeCCCCeEEEEecCCcEEEEECCCCceeeeeeeCee-------eEEEEeeCCCCcEEEEecCCCc
Q 036314          178 AISTLVGHTQCVSSVVWPQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKA-------LNCIDIGGEGSALIAAGGSDPI  250 (347)
Q Consensus       178 ~~~~~~~h~~~v~~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~la~~~~d~~  250 (347)
                      ..-.+..-.++|.++.| .+..+|=++.+| +++||+...+.+..++....       ...+.|.+.  ..++.| ...+
T Consensus       152 ~~v~l~~~eG~I~~i~W-~g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~--~~LVIG-W~d~  226 (846)
T KOG2066|consen  152 DSVVLSEGEGPIHSIKW-RGNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDE--DRLVIG-WGDS  226 (846)
T ss_pred             cceeeecCccceEEEEe-cCcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCC--CeEEEe-cCCe
Confidence            00012234568899998 456777776665 99999998877766653321       123444332  344444 5677


Q ss_pred             EEEEeCC
Q 036314          251 LRIWDPR  257 (347)
Q Consensus       251 i~iwd~~  257 (347)
                      |+|..++
T Consensus       227 v~i~~I~  233 (846)
T KOG2066|consen  227 VKICSIK  233 (846)
T ss_pred             EEEEEEe
Confidence            8898887

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.37  E-value=1.1e-05  Score=67.91  Aligned_cols=214  Identities=13%  Similarity=0.220  Sum_probs=124.1

Q ss_pred             ccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCC-CCCccceeeeccCCCccccccccccccccccCCccceEEEEeC-C
Q 036314          119 KASVHSIAAETSGNMVCSGSWDCTISLWRTNDSD-AAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWP-Q  196 (347)
Q Consensus       119 ~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~  196 (347)
                      ...|++|.|...|.++++|...|.|-+|.-+... +..+.....+      ..  ..+...+..+. -...|..+.|- +
T Consensus        26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQ------sh--e~EFDYLkSle-ieEKin~I~w~~~   96 (460)
T COG5170          26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQ------SH--ELEFDYLKSLE-IEEKINAIEWFDD   96 (460)
T ss_pred             cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhc------cc--ccchhhhhhcc-HHHHhhheeeecC
Confidence            4568899999999999999999999999654321 0000000000      00  00000111111 11346667762 2


Q ss_pred             C--CeEEEEecCCcEEEEECCCCc-------------------ee---ee-----eee-----------------CeeeE
Q 036314          197 Q--ETIYSASWDHSVRTWDVEMGK-------------------DL---SD-----IFC-----------------GKALN  230 (347)
Q Consensus       197 ~--~~l~s~s~dg~v~vwd~~~~~-------------------~~---~~-----~~~-----------------~~~~~  230 (347)
                      .  ..++..+.|++|++|-+....                   ++   ..     +..                 ..-++
T Consensus        97 t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiN  176 (460)
T COG5170          97 TGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHIN  176 (460)
T ss_pred             CCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEee
Confidence            2  235556789999999875321                   00   00     000                 01234


Q ss_pred             EEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCC-----CCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCC
Q 036314          231 CIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHN-----SWISACKWHNKSWFHLISASYDGKVMLWDLRTA  305 (347)
Q Consensus       231 ~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~-----~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~  305 (347)
                      .+.+.++.. .+++ ..|-.|.+|.+......-.+..+.+|.     .-|++..|+|.....+.-.+.-|.|++-|+|..
T Consensus       177 SiS~NsD~e-t~lS-aDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~  254 (460)
T COG5170         177 SISFNSDKE-TLLS-ADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQS  254 (460)
T ss_pred             eeeecCchh-eeee-ccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhh
Confidence            455544433 4443 468899999987655444455555554     247888999987667777788899999999943


Q ss_pred             cc----cee------------ecCCCCeEEEEeecC-CCEEEEccCCceEEEeecc
Q 036314          306 WP----LSV------------IDSHKDKVLCADWWR-GDSVISGGVDSKLCVSSGV  344 (347)
Q Consensus       306 ~~----~~~------------~~~h~~~v~~~~~~~-~~~l~s~s~D~~v~vw~~~  344 (347)
                      ..    .+.            +++-...|..+.|++ |+++++.+ =-+|+||+.+
T Consensus       255 alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd-yltvkiwDvn  309 (460)
T COG5170         255 ALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD-YLTVKIWDVN  309 (460)
T ss_pred             hhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec-cceEEEEecc
Confidence            21    111            122234566788986 55666655 4689999865

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.37  E-value=4.2e-05  Score=63.22  Aligned_cols=170  Identities=11%  Similarity=0.064  Sum_probs=105.3

Q ss_pred             CCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEE-e-CCCCeEEEEecCCc
Q 036314          131 GNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVV-W-PQQETIYSASWDHS  208 (347)
Q Consensus       131 ~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~-~-~~~~~l~s~s~dg~  208 (347)
                      ...|+.|+.-|...+|...+.+..                        .+....|...|.-+. + ...-.+.-++.|.+
T Consensus        84 c~~la~gG~~g~fd~~~~~tn~~h------------------------~~~cd~snn~v~~~~r~cd~~~~~~i~sndht  139 (344)
T KOG4532|consen   84 CVTLADGGASGQFDLFACNTNDGH------------------------LYQCDVSNNDVTLVKRYCDLKFPLNIASNDHT  139 (344)
T ss_pred             ccEEEeccccceeeeecccCcccc------------------------eeeecccccchhhhhhhcccccceeeccCCcc
Confidence            357888999999999987653211                        011111111111000 0 11123556788999


Q ss_pred             EEEEECCCCceeeeeeeC-eeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeE
Q 036314          209 VRTWDVEMGKDLSDIFCG-KALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFH  287 (347)
Q Consensus       209 v~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~  287 (347)
                      +++.++..+..-..+... -....++++ +++.+.++.+....|-+|.+................+.--+..|+..+ .+
T Consensus       140 ~k~~~~~~~s~~~~~h~~~~~~ns~~~s-nd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~-~~  217 (344)
T KOG4532|consen  140 GKTMVVSGDSNKFAVHNQNLTQNSLHYS-NDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSEND-LQ  217 (344)
T ss_pred             eeEEEEecCcccceeeccccceeeeEEc-CCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCc-ce
Confidence            999988654322222111 124566664 456678888888999999887543322223445555666778888776 46


Q ss_pred             EEEEeCCCcEEEEEcCCCcc-ce----eecCCCCeEEEEeecCC
Q 036314          288 LISASYDGKVMLWDLRTAWP-LS----VIDSHKDKVLCADWWRG  326 (347)
Q Consensus       288 l~s~s~D~~i~lwd~~~~~~-~~----~~~~h~~~v~~~~~~~~  326 (347)
                      +|++..||++-|||+|.... ..    +-..|.++++.+.|+++
T Consensus       218 FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~  261 (344)
T KOG4532|consen  218 FAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLY  261 (344)
T ss_pred             EEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCC
Confidence            99999999999999986422 21    22358899999999863

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.35  E-value=1.7e-05  Score=74.71  Aligned_cols=183  Identities=18%  Similarity=0.218  Sum_probs=121.0

Q ss_pred             ccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEeCCCC
Q 036314          119 KASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWPQQE  198 (347)
Q Consensus       119 ~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~  198 (347)
                      .+.+.|++++  +++++-|..+|.|++.+....                          . ++...|...     -..|+
T Consensus        39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~--------------------------~-~~~~~~s~~-----~~~Ge   84 (846)
T KOG2066|consen   39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGN--------------------------P-KTNFDHSSS-----ILEGE   84 (846)
T ss_pred             hhHHHHHHhh--cceeeeccccceEEEEecCCc--------------------------c-ccccccccc-----ccCCc
Confidence            4456666665  578888999999999976421                          0 111122211     13688


Q ss_pred             eEEEEecCCcEEEEECCCCceeeeeeeCeeeEEEEeeCC----CCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCC
Q 036314          199 TIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGE----GSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSW  274 (347)
Q Consensus       199 ~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~----~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~  274 (347)
                      +++|+|.||++.|--+-+++...+...+.++..++++|+    ....+++||.-| +.++.-+--+.... ..+....+.
T Consensus        85 y~asCS~DGkv~I~sl~~~~~~~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~-v~l~~~eG~  162 (846)
T KOG2066|consen   85 YVASCSDDGKVVIGSLFTDDEITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDS-VVLSEGEGP  162 (846)
T ss_pred             eEEEecCCCcEEEeeccCCccceeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccc-eeeecCccc
Confidence            999999999999998888887777777888999999876    345678888888 88886432222222 245566678


Q ss_pred             eeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecCCCCeEE------EEeecCCCEEEEccCCceEEEee
Q 036314          275 ISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKVL------CADWWRGDSVISGGVDSKLCVSS  342 (347)
Q Consensus       275 v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h~~~v~------~~~~~~~~~l~s~s~D~~v~vw~  342 (347)
                      |.+|.|..   .++|=++.+| |+++|...++.+..+.--...++      -+.|.+..+|+- |+..+|+|.+
T Consensus       163 I~~i~W~g---~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVI-GW~d~v~i~~  231 (846)
T KOG2066|consen  163 IHSIKWRG---NLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVI-GWGDSVKICS  231 (846)
T ss_pred             eEEEEecC---cEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEE-ecCCeEEEEE
Confidence            99999964   3566666555 89999988766655432222332      345656666665 4444555543

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.35  E-value=0.00074  Score=58.14  Aligned_cols=67  Identities=15%  Similarity=0.209  Sum_probs=46.7

Q ss_pred             CCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecCCCCeEEEEeecCCCEEEEccCCceE
Q 036314          270 SHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKVLCADWWRGDSVISGGVDSKL  338 (347)
Q Consensus       270 ~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~D~~v  338 (347)
                      .-..|+-+|++++++....+|+=..+.+.+||..+++.+....-  ..+-+++-.++..++|.+....+
T Consensus       214 ~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l--~D~cGva~~~~~f~~ssG~G~~~  280 (305)
T PF07433_consen  214 RLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPL--PDACGVAPTDDGFLVSSGQGQLI  280 (305)
T ss_pred             hhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeecccc--CceeeeeecCCceEEeCCCccEE
Confidence            34578999999999876556666889999999999886665432  24455555555567776655433

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.34  E-value=2.2e-05  Score=73.74  Aligned_cols=83  Identities=17%  Similarity=0.101  Sum_probs=57.1

Q ss_pred             CCCcCCceeeccC----------CCC--C-EEEEEecCCeEEEEcCC-CeEEEEeeccCCceEEEEEeecCCCceEEEEE
Q 036314           20 PSLHDDWVSAVDG----------SNP--G-FILTGCYDNLGRVWKAG-GVCTHILEGHCGAVSSVNIIKSDGLKYVTVAT   85 (347)
Q Consensus        20 ~~~h~~~v~~~~~----------~~~--~-~l~sg~~d~~i~iw~~~-~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s   85 (347)
                      .--|...|+.++.          ++.  + +||++...|.|.+||.. +...--+..|.++|..+.|.+........|+.
T Consensus        51 ie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~Lla  130 (1062)
T KOG1912|consen   51 IELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLA  130 (1062)
T ss_pred             cccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEE
Confidence            3356677776663          211  2 57788888999999964 44444578899999999998744322245666


Q ss_pred             ccCCCcEEEEecccccc
Q 036314           86 ASKDQTLRLWKFDAEEL  102 (347)
Q Consensus        86 ~s~Dg~v~~wd~~~~~~  102 (347)
                      -..-.++-+|+..+|+.
T Consensus       131 Ih~ss~lvLwntdtG~k  147 (1062)
T KOG1912|consen  131 IHGSSTLVLWNTDTGEK  147 (1062)
T ss_pred             ecCCcEEEEEEccCCce
Confidence            66667999999887753

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.33  E-value=0.00084  Score=61.59  Aligned_cols=268  Identities=14%  Similarity=0.083  Sum_probs=137.1

Q ss_pred             CCEEEEEecCCeEEEEcC-CCeEEEEeeccCCceEE-EEEeecCCCceEEEEEccCCCcEEEEeccccccccCcccccee
Q 036314           35 PGFILTGCYDNLGRVWKA-GGVCTHILEGHCGAVSS-VNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSF  112 (347)
Q Consensus        35 ~~~l~sg~~d~~i~iw~~-~~~~~~~l~~h~~~V~~-v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~  112 (347)
                      ++.+..++.++.+..+|. +|+.+....-.. .+.+ ..+.  ++    .++.++.++.|..+|.++++.+=......+.
T Consensus       120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~ssP~v~--~~----~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~  192 (394)
T PRK11138        120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAG-EALSRPVVS--DG----LVLVHTSNGMLQALNESDGAVKWTVNLDVPS  192 (394)
T ss_pred             CCEEEEEcCCCEEEEEECCCCCCcccccCCC-ceecCCEEE--CC----EEEEECCCCEEEEEEccCCCEeeeecCCCCc
Confidence            455666778899999986 466554433222 2221 1111  11    3566778899999999887643110000000


Q ss_pred             eeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccC-CccceEE
Q 036314          113 KILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVG-HTQCVSS  191 (347)
Q Consensus       113 ~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~  191 (347)
                      ..+.+...++.    .  +..++.++.++.+...|..++........      .....     ......+.. ...++  
T Consensus       193 ~~~~~~~sP~v----~--~~~v~~~~~~g~v~a~d~~~G~~~W~~~~------~~~~~-----~~~~~~~~~~~~sP~--  253 (394)
T PRK11138        193 LTLRGESAPAT----A--FGGAIVGGDNGRVSAVLMEQGQLIWQQRI------SQPTG-----ATEIDRLVDVDTTPV--  253 (394)
T ss_pred             ccccCCCCCEE----E--CCEEEEEcCCCEEEEEEccCChhhheecc------ccCCC-----ccchhcccccCCCcE--
Confidence            00111122221    1  23455677788888888776543211000      00000     000000000 00111  


Q ss_pred             EEeCCCCeEEEEecCCcEEEEECCCCceeeeeeeCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCC
Q 036314          192 VVWPQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSH  271 (347)
Q Consensus       192 ~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h  271 (347)
                       .  .++.++.++.++.+..+|.++++.+=+...... ..+..  .++ .+..++.++.+..+|.....   .+-....-
T Consensus       254 -v--~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~-~~~~~--~~~-~vy~~~~~g~l~ald~~tG~---~~W~~~~~  323 (394)
T PRK11138        254 -V--VGGVVYALAYNGNLVALDLRSGQIVWKREYGSV-NDFAV--DGG-RIYLVDQNDRVYALDTRGGV---ELWSQSDL  323 (394)
T ss_pred             -E--ECCEEEEEEcCCeEEEEECCCCCEEEeecCCCc-cCcEE--ECC-EEEEEcCCCeEEEEECCCCc---EEEccccc
Confidence             1  246777788899999999999875432221111 11122  222 44556778999999986432   11111100


Q ss_pred             CC-CeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecCCCCeEEE-EeecCCCEEEEccCCceEEEee
Q 036314          272 NS-WISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKVLC-ADWWRGDSVISGGVDSKLCVSS  342 (347)
Q Consensus       272 ~~-~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h~~~v~~-~~~~~~~~l~s~s~D~~v~vw~  342 (347)
                      .. ...+.... ++  .|..++.||.+...|.++|+.+....-....+.+ ..+ .+++|..++.||.|...+
T Consensus       324 ~~~~~~sp~v~-~g--~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~-~~~~l~v~t~~G~l~~~~  392 (394)
T PRK11138        324 LHRLLTAPVLY-NG--YLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV-ADDKLLIQARDGTVYAIT  392 (394)
T ss_pred             CCCcccCCEEE-CC--EEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE-ECCEEEEEeCCceEEEEe
Confidence            01 11111121 22  4788899999999999999877665433233332 222 255777789999988765

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.33  E-value=0.00041  Score=66.18  Aligned_cols=219  Identities=12%  Similarity=0.173  Sum_probs=133.0

Q ss_pred             ceeeccCCCCCEEEEEecCCeEEEEcCCCeEEEEeeccCCc-eEEEEEeecCCCceEEEEEccCCCc-----EEEEeccc
Q 036314           26 WVSAVDGSNPGFILTGCYDNLGRVWKAGGVCTHILEGHCGA-VSSVNIIKSDGLKYVTVATASKDQT-----LRLWKFDA   99 (347)
Q Consensus        26 ~v~~~~~~~~~~l~sg~~d~~i~iw~~~~~~~~~l~~h~~~-V~~v~~~~~~~~~~~~l~s~s~Dg~-----v~~wd~~~   99 (347)
                      .|++++ +.++.+|-|+.||.|-+.+..-+..+.+..+... |..+....+    ...|++-++|++     |++|+++.
T Consensus        27 ~isc~~-s~~~~vvigt~~G~V~~Ln~s~~~~~~fqa~~~siv~~L~~~~~----~~~L~sv~Ed~~~np~llkiw~lek  101 (933)
T KOG2114|consen   27 AISCCS-SSTGSVVIGTADGRVVILNSSFQLIRGFQAYEQSIVQFLYILNK----QNFLFSVGEDEQGNPVLLKIWDLEK  101 (933)
T ss_pred             ceeEEc-CCCceEEEeeccccEEEecccceeeehheecchhhhhHhhcccC----ceEEEEEeecCCCCceEEEEecccc
Confidence            667665 3567899999999887777654455667777666 444443321    135777777764     99999875


Q ss_pred             cccccCccccceee--eeec-----cccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccc
Q 036314          100 EELVNHPKKIRSFK--ILRG-----HKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEP  172 (347)
Q Consensus       100 ~~~~~~~~~~~~~~--~~~~-----h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  172 (347)
                      -+.-   .+++++.  .+.+     ...++.+++.+.+-+.+|.|=.+|.|..+.-+-...                   
T Consensus       102 ~~~n---~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RD-------------------  159 (933)
T KOG2114|consen  102 VDKN---NSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRD-------------------  159 (933)
T ss_pred             cCCC---CCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhc-------------------
Confidence            4311   1133441  1122     355678899999989999999999998884211000                   


Q ss_pred             cccccccccccCCccceEEEEeC-CCCeEEEEecCCcEEEEECCCCceeee-ee-eCeeeEEEEeeCCCCcEEEEecCCC
Q 036314          173 QLEGEAISTLVGHTQCVSSVVWP-QQETIYSASWDHSVRTWDVEMGKDLSD-IF-CGKALNCIDIGGEGSALIAAGGSDP  249 (347)
Q Consensus       173 ~~~~~~~~~~~~h~~~v~~~~~~-~~~~l~s~s~dg~v~vwd~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~la~~~~d~  249 (347)
                        .+........-..+|+++++. ++..++.+..-..|.+|.+....+... +. .+-..+|..+++....+++++  +.
T Consensus       160 --rgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~--~e  235 (933)
T KOG2114|consen  160 --RGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG--SE  235 (933)
T ss_pred             --cccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec--Cc
Confidence              001011111234678999884 555534444556799999873321222 22 234678888876655455544  57


Q ss_pred             cEEEEeCCCCCCCCCeEEec-CCCCCeeEE
Q 036314          250 ILRIWDPRKPGTSAPVFQFS-SHNSWISAC  278 (347)
Q Consensus       250 ~i~iwd~~~~~~~~~~~~~~-~h~~~v~~v  278 (347)
                      .+.+||....   .+-+++. ||...+..+
T Consensus       236 ~l~fY~sd~~---~~cfaf~~g~kk~~~~~  262 (933)
T KOG2114|consen  236 FLYFYDSDGR---GPCFAFEVGEKKEMLVF  262 (933)
T ss_pred             eEEEEcCCCc---ceeeeecCCCeEEEEEE
Confidence            8999997632   3456777 777655433

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.33  E-value=1.2e-06  Score=71.74  Aligned_cols=143  Identities=19%  Similarity=0.196  Sum_probs=91.1

Q ss_pred             CCCeEEEEecCCcEEEEECCCCceee-eeee---CeeeEEEEeeCCCCcEEEEec-----CCCcEEEEeCCCCCCCCCeE
Q 036314          196 QQETIYSASWDHSVRTWDVEMGKDLS-DIFC---GKALNCIDIGGEGSALIAAGG-----SDPILRIWDPRKPGTSAPVF  266 (347)
Q Consensus       196 ~~~~l~s~s~dg~v~vwd~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~la~~~-----~d~~i~iwd~~~~~~~~~~~  266 (347)
                      .+..++++..||.+.+.+.+.-..+. .+..   ...-.++.  . ..+++.++.     .-+..+.|+++..+...+ .
T Consensus       100 ~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~--~-~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~-~  175 (319)
T KOG4714|consen  100 TDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKIC--R-HGNSILSGGCGNWNAQDNFYANTLDPIKTLIP-S  175 (319)
T ss_pred             cCCceEecCCCceEEEEechHHHhhhhhccccccccccccee--e-cccEEecCCcceEeeccceeeecccccccccc-c
Confidence            35678899999999999876422111 1110   00001111  1 112332221     123455666654322111 1


Q ss_pred             EecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCC-ccceeecCCCCeEEEEeecC--CCEEEEccCCceEEEeec
Q 036314          267 QFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTA-WPLSVIDSHKDKVLCADWWR--GDSVISGGVDSKLCVSSG  343 (347)
Q Consensus       267 ~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~-~~~~~~~~h~~~v~~~~~~~--~~~l~s~s~D~~v~vw~~  343 (347)
                      .  ...+.|.+++-+|.-..++++|+.||.+-|||+|.. .+...+..|+.+++.+-|+|  +..|.+++.||.+.-|+-
T Consensus       176 ~--~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wda  253 (319)
T KOG4714|consen  176 K--KALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDA  253 (319)
T ss_pred             c--cccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcC
Confidence            1  122348888888887778899999999999999986 34456789999999999985  567999999999999985


Q ss_pred             c
Q 036314          344 V  344 (347)
Q Consensus       344 ~  344 (347)
                      .
T Consensus       254 s  254 (319)
T KOG4714|consen  254 S  254 (319)
T ss_pred             C
Confidence            4

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.31  E-value=4.9e-05  Score=66.22  Aligned_cols=82  Identities=18%  Similarity=0.276  Sum_probs=64.9

Q ss_pred             eeeeeeccccceEEEEEeCCCC-EEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccce
Q 036314          111 SFKILRGHKASVHSIAAETSGN-MVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCV  189 (347)
Q Consensus       111 ~~~~~~~h~~~V~~v~~s~~~~-~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v  189 (347)
                      ..+.+.+|...|++++|+|..+ ++..++.+.+|+|.|+++..                         ....+..| .++
T Consensus       185 ssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~-------------------------~vssy~a~-~~~  238 (463)
T KOG1645|consen  185 SSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSC-------------------------VVSSYIAY-NQI  238 (463)
T ss_pred             hhhcccccchhhhhhccCccccceeeeeccCceEEEEecccce-------------------------eeeheecc-CCc
Confidence            3446778999999999999987 78889999999999998642                         22334445 678


Q ss_pred             EEEEeC--CCCeEEEEecCCcEEEEECCCCc
Q 036314          190 SSVVWP--QQETIYSASWDHSVRTWDVEMGK  218 (347)
Q Consensus       190 ~~~~~~--~~~~l~s~s~dg~v~vwd~~~~~  218 (347)
                      ++.+|.  +...|+.|-.+|.|.+||++..+
T Consensus       239 wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~  269 (463)
T KOG1645|consen  239 WSCCWDLDERHVIYAGLQNGMVLVYDMRQPE  269 (463)
T ss_pred             eeeeeccCCcceeEEeccCceEEEEEccCCC
Confidence            888884  45679999999999999998654

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=98.30  E-value=7.4e-06  Score=69.39  Aligned_cols=132  Identities=17%  Similarity=0.256  Sum_probs=91.4

Q ss_pred             CCCCeEEEEecCCcEEEEECCCCceeeeeeeCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCC
Q 036314          195 PQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSW  274 (347)
Q Consensus       195 ~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~  274 (347)
                      |+++++++.+.- .+.|-|.++-+....+.+-..+..+.+..+....+.....|+.|.+|++.+++-   ...+......
T Consensus        18 p~g~yiAs~~~y-rlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew---~ckIdeg~ag   93 (447)
T KOG4497|consen   18 PCGNYIASLSRY-RLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEW---YCKIDEGQAG   93 (447)
T ss_pred             CCCCeeeeeeee-EEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeeccee---EEEeccCCCc
Confidence            788999988755 788888877554333323334444555555555666667889999999986432   3455567778


Q ss_pred             eeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecCCCCeEEEEeecC-CCEEEE
Q 036314          275 ISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKVLCADWWR-GDSVIS  331 (347)
Q Consensus       275 v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~l~s  331 (347)
                      +.++.|||+|+..|.+...|-+|.+|.+.+.. ..-+..-+..+..++|++ |++.|-
T Consensus        94 ls~~~WSPdgrhiL~tseF~lriTVWSL~t~~-~~~~~~pK~~~kg~~f~~dg~f~ai  150 (447)
T KOG4497|consen   94 LSSISWSPDGRHILLTSEFDLRITVWSLNTQK-GYLLPHPKTNVKGYAFHPDGQFCAI  150 (447)
T ss_pred             ceeeeECCCcceEeeeecceeEEEEEEeccce-eEEecccccCceeEEECCCCceeee
Confidence            99999999998888888999999999998743 222332234557788875 555443

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.28  E-value=0.00029  Score=62.88  Aligned_cols=119  Identities=12%  Similarity=0.128  Sum_probs=90.2

Q ss_pred             CCCcCCceeeccCC-CCCEEEEEecCC-eEEEEcCCCeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEec
Q 036314           20 PSLHDDWVSAVDGS-NPGFILTGCYDN-LGRVWKAGGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKF   97 (347)
Q Consensus        20 ~~~h~~~v~~~~~~-~~~~l~sg~~d~-~i~iw~~~~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~   97 (347)
                      ..+|...|.=..+. ++.-++-|-.|| .+-++|..+..++.+.+.-+.|.++..++++    +.++.+....++.+.|+
T Consensus       355 qv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dG----K~~vvaNdr~el~vidi  430 (668)
T COG4946         355 QVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDG----KKVVVANDRFELWVIDI  430 (668)
T ss_pred             EcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCC----cEEEEEcCceEEEEEEe
Confidence            55788888877765 555788888898 8999998877777888888999999999843    46777777788888899


Q ss_pred             cccccccCccccceeeeeeccccceEEEEEeCCCCEEEEe----eCCCcEEEEecCCC
Q 036314           98 DAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSG----SWDCTISLWRTNDS  151 (347)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sg----s~Dg~I~iwd~~~~  151 (347)
                      ++++..       .+.  +.-.+-|+..+|+|+++++|-+    =.-..|+++|+..+
T Consensus       431 dngnv~-------~id--kS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~  479 (668)
T COG4946         431 DNGNVR-------LID--KSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGG  479 (668)
T ss_pred             cCCCee-------Eec--ccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCC
Confidence            887531       111  2235668899999999999854    44567999998764

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.24  E-value=0.0019  Score=57.50  Aligned_cols=111  Identities=11%  Similarity=0.109  Sum_probs=70.3

Q ss_pred             CCCeEEEEecCCcEEEEECCCCc-----eeeeeeeC--------eeeEEEEeeCCCCcEEEEe---------cCCCcEEE
Q 036314          196 QQETIYSASWDHSVRTWDVEMGK-----DLSDIFCG--------KALNCIDIGGEGSALIAAG---------GSDPILRI  253 (347)
Q Consensus       196 ~~~~l~s~s~dg~v~vwd~~~~~-----~~~~~~~~--------~~~~~~~~~~~~~~~la~~---------~~d~~i~i  253 (347)
                      ++.+++.. ..|+|.+-|+....     ....+...        .....++++++++.+++..         ...+.|.+
T Consensus       205 dg~~~~vs-~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~V  283 (352)
T TIGR02658       205 SGRLVWPT-YTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFV  283 (352)
T ss_pred             CCcEEEEe-cCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEE
Confidence            55555544 44999999964332     12211111        1223478887777666533         12268999


Q ss_pred             EeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEe-CCCcEEEEEcCCCccceee
Q 036314          254 WDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISAS-YDGKVMLWDLRTAWPLSVI  311 (347)
Q Consensus       254 wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s-~D~~i~lwd~~~~~~~~~~  311 (347)
                      +|....+   .+..+. -...+..++++||+..+|.+.. .++.|.+.|..+++.++++
T Consensus       284 iD~~t~k---vi~~i~-vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i  338 (352)
T TIGR02658       284 VDAKTGK---RLRKIE-LGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV  338 (352)
T ss_pred             EECCCCe---EEEEEe-CCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence            9987532   234433 2347889999999984455554 7889999999999888776

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.24  E-value=8.9e-07  Score=83.85  Aligned_cols=195  Identities=15%  Similarity=0.240  Sum_probs=121.2

Q ss_pred             EEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEe
Q 036314           58 HILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSG  137 (347)
Q Consensus        58 ~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sg  137 (347)
                      +.|..|+...++++|+...    .+|+.|+..|+|+++++.+|..         .....+|.++|+-+.-+.||...++.
T Consensus      1095 ~~frd~~~~fTc~afs~~~----~hL~vG~~~Geik~~nv~sG~~---------e~s~ncH~SavT~vePs~dgs~~Lts 1161 (1516)
T KOG1832|consen 1095 RSFRDETALFTCIAFSGGT----NHLAVGSHAGEIKIFNVSSGSM---------EESVNCHQSAVTLVEPSVDGSTQLTS 1161 (1516)
T ss_pred             hhhhccccceeeEEeecCC----ceEEeeeccceEEEEEccCccc---------cccccccccccccccccCCcceeeee
Confidence            4678899999999998743    3689999999999999988742         23456899999999888899766654


Q ss_pred             e-CCC-cEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEeCCCCe-EEEEecCCcEEEEEC
Q 036314          138 S-WDC-TISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWPQQET-IYSASWDHSVRTWDV  214 (347)
Q Consensus       138 s-~Dg-~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~dg~v~vwd~  214 (347)
                      + +.. -..+|++..-.                        ....++.+    -.++.|++..+ -+.|.......+||+
T Consensus      1162 ss~S~PlsaLW~~~s~~------------------------~~~Hsf~e----d~~vkFsn~~q~r~~gt~~d~a~~YDv 1213 (1516)
T KOG1832|consen 1162 SSSSSPLSALWDASSTG------------------------GPRHSFDE----DKAVKFSNSLQFRALGTEADDALLYDV 1213 (1516)
T ss_pred             ccccCchHHHhcccccc------------------------Cccccccc----cceeehhhhHHHHHhcccccceEEEec
Confidence            3 333 46788875310                        01111111    12344543221 122333356889999


Q ss_pred             CCCceeeeeeeC-----eeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEE
Q 036314          215 EMGKDLSDIFCG-----KALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLI  289 (347)
Q Consensus       215 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~  289 (347)
                      .++..+.++..+     ..-++..|+|.+. ++.   .||  -+||.|.+.   .+..|...+.++. =.|+|.|.. ++
T Consensus      1214 qT~~~l~tylt~~~~~~y~~n~a~FsP~D~-LIl---ndG--vLWDvR~~~---aIh~FD~ft~~~~-G~FHP~g~e-VI 1282 (1516)
T KOG1832|consen 1214 QTCSPLQTYLTDTVTSSYSNNLAHFSPCDT-LIL---NDG--VLWDVRIPE---AIHRFDQFTDYGG-GGFHPSGNE-VI 1282 (1516)
T ss_pred             ccCcHHHHhcCcchhhhhhccccccCCCcc-eEe---eCc--eeeeeccHH---HHhhhhhheeccc-ccccCCCce-EE
Confidence            999877664321     2346778877664 433   355  379998642   2444433333222 238898865 44


Q ss_pred             EEeCCCcEEEEEcCCCccce
Q 036314          290 SASYDGKVMLWDLRTAWPLS  309 (347)
Q Consensus       290 s~s~D~~i~lwd~~~~~~~~  309 (347)
                      --+     .|||+|+...++
T Consensus      1283 INS-----EIwD~RTF~lLh 1297 (1516)
T KOG1832|consen 1283 INS-----EIWDMRTFKLLH 1297 (1516)
T ss_pred             eec-----hhhhhHHHHHHh
Confidence            434     389999865443

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.22  E-value=0.0022  Score=64.75  Aligned_cols=233  Identities=12%  Similarity=0.136  Sum_probs=132.3

Q ss_pred             cCCceeeccCC-CCCEEEEEec---C---CeEEEEcCCCeEEEEeeccCCceEEEEEeecCCCceEEEEEccC---CCcE
Q 036314           23 HDDWVSAVDGS-NPGFILTGCY---D---NLGRVWKAGGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASK---DQTL   92 (347)
Q Consensus        23 h~~~v~~~~~~-~~~~l~sg~~---d---~~i~iw~~~~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~---Dg~v   92 (347)
                      +.+.-..+... ||.|+|..+.   +   ..+|+|+..|....+-..-.+--.+++|.|.++    .+|+...   ...|
T Consensus       208 ~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~ReG~L~stSE~v~gLe~~l~WrPsG~----lIA~~q~~~~~~~V  283 (928)
T PF04762_consen  208 WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSREGELQSTSEPVDGLEGALSWRPSGN----LIASSQRLPDRHDV  283 (928)
T ss_pred             cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCCceEEeccccCCCccCCccCCCCCC----EEEEEEEcCCCcEE
Confidence            55555566665 6678888775   2   479999988865444443333345788988664    4666543   3567


Q ss_pred             EEEeccccccccCccccceeeeee--ccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccc
Q 036314           93 RLWKFDAEELVNHPKKIRSFKILR--GHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVE  170 (347)
Q Consensus        93 ~~wd~~~~~~~~~~~~~~~~~~~~--~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~  170 (347)
                      ..|+.+.-+.        --..++  .....|..+.|++|+..||..-.|. |.+|...+-..                 
T Consensus       284 vFfErNGLrh--------geF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHW-----------------  337 (928)
T PF04762_consen  284 VFFERNGLRH--------GEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHW-----------------  337 (928)
T ss_pred             EEEecCCcEe--------eeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEE-----------------
Confidence            7777654321        011222  3466789999999999999877665 99997654210                 


Q ss_pred             cccccccccccccCC-ccceEEEEeCC--CCeEEEEecCCcEEEEECCCCceeeeeeeCeeeEEEEeeCCCCcEEEEecC
Q 036314          171 EPQLEGEAISTLVGH-TQCVSSVVWPQ--QETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEGSALIAAGGS  247 (347)
Q Consensus       171 ~~~~~~~~~~~~~~h-~~~v~~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~  247 (347)
                        .+    .+.+... ...+..+.|++  ...|.....++.+..++..-...     .+.     ...+.+...+++ -+
T Consensus       338 --YL----Kqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~-----~s~-----~~~~~D~g~vaV-ID  400 (928)
T PF04762_consen  338 --YL----KQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVS-----RSP-----GSSPNDNGTVAV-ID  400 (928)
T ss_pred             --EE----EEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEE-----ecC-----CCCccCceEEEE-Ee
Confidence              00    0111111 11223366642  23455555556666554321000     000     001112222222 23


Q ss_pred             CCcEEEEeCCCCCCCCCe--EEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCC
Q 036314          248 DPILRIWDPRKPGTSAPV--FQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRT  304 (347)
Q Consensus       248 d~~i~iwd~~~~~~~~~~--~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~  304 (347)
                      ..++.+-+++...-|.|+  +.+. -...|.+++|++++.. +++-..||+|.+|.+..
T Consensus       401 G~~lllTpf~~a~VPPPMs~~~l~-~~~~v~~vaf~~~~~~-~avl~~d~~l~~~~~~~  457 (928)
T PF04762_consen  401 GNKLLLTPFRRAVVPPPMSSYELE-LPSPVNDVAFSPSNSR-FAVLTSDGSLSIYEWDL  457 (928)
T ss_pred             CCeEEEecccccCCCchHhceEEc-CCCCcEEEEEeCCCCe-EEEEECCCCEEEEEecC
Confidence            456667666654333333  3443 3457999999998764 88889999999998543

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.21  E-value=6.3e-05  Score=71.97  Aligned_cols=194  Identities=15%  Similarity=0.187  Sum_probs=126.2

Q ss_pred             CCCEEEEEecCCeEEEEcCCCeEEEEeec-cCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCcccccee
Q 036314           34 NPGFILTGCYDNLGRVWKAGGVCTHILEG-HCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSF  112 (347)
Q Consensus        34 ~~~~l~sg~~d~~i~iw~~~~~~~~~l~~-h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~  112 (347)
                      ++..++-||.-..+...|..+.+...... ..+.   +.+.+..+   +.+.+|...|+|-+-|..+         .+.+
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~---v~imR~Nn---r~lf~G~t~G~V~LrD~~s---------~~~i  210 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASG---VTIMRYNN---RNLFCGDTRGTVFLRDPNS---------FETI  210 (1118)
T ss_pred             CCcceeecchhhheeeeecccceeeeeeeccCCc---eEEEEecC---cEEEeecccceEEeecCCc---------Ccee
Confidence            34456666666666666765444332221 1112   33444333   4688888899999888654         3467


Q ss_pred             eeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEE
Q 036314          113 KILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSV  192 (347)
Q Consensus       113 ~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~  192 (347)
                      .++.+|++.|.+.  +-.|+.|+++|..+.-  +                                              
T Consensus       211 ht~~aHs~siSDf--Dv~GNlLitCG~S~R~--~----------------------------------------------  240 (1118)
T KOG1275|consen  211 HTFDAHSGSISDF--DVQGNLLITCGYSMRR--Y----------------------------------------------  240 (1118)
T ss_pred             eeeeccccceeee--eccCCeEEEeeccccc--c----------------------------------------------
Confidence            7888999888654  4558888888743211  0                                              


Q ss_pred             EeCCCCeEEEEecCCcEEEEECCCCceeeeeeeCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCC-CCCeEEecCC
Q 036314          193 VWPQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGT-SAPVFQFSSH  271 (347)
Q Consensus       193 ~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~-~~~~~~~~~h  271 (347)
                            .+   ..|.-|+|||++.-+.+..++......-+.|.|.=...++.++..|...+-|...-.. ...++.+..-
T Consensus       241 ------~l---~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~  311 (1118)
T KOG1275|consen  241 ------NL---AMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPN  311 (1118)
T ss_pred             ------cc---cccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccceeeccccccCCCccceeEEccC
Confidence                  11   2477899999998776666654443344455555455678888899999999432212 2334555566


Q ss_pred             CCCeeEEEeCCCCCeEEEEEeCCCcEEEEEc
Q 036314          272 NSWISACKWHNKSWFHLISASYDGKVMLWDL  302 (347)
Q Consensus       272 ~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~  302 (347)
                      .+.+..+.+++.+. .||-|..+|.|.+|--
T Consensus       312 ~s~i~~fDiSsn~~-alafgd~~g~v~~wa~  341 (1118)
T KOG1275|consen  312 GSGISAFDISSNGD-ALAFGDHEGHVNLWAD  341 (1118)
T ss_pred             CCcceeEEecCCCc-eEEEecccCcEeeecC
Confidence            67799999999986 5999999999999973

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.21  E-value=0.00061  Score=61.33  Aligned_cols=259  Identities=19%  Similarity=0.245  Sum_probs=141.5

Q ss_pred             eeeccCC-CCCEEEEEecCC---------------eEEEEcCC-CeEEEEeeccCCc--eE-EEEEeecCCCceEEEEEc
Q 036314           27 VSAVDGS-NPGFILTGCYDN---------------LGRVWKAG-GVCTHILEGHCGA--VS-SVNIIKSDGLKYVTVATA   86 (347)
Q Consensus        27 v~~~~~~-~~~~l~sg~~d~---------------~i~iw~~~-~~~~~~l~~h~~~--V~-~v~~~~~~~~~~~~l~s~   86 (347)
                      |.-+.|+ ++.||+|=+..+               .+-+||.. |..+..+.+...+  .. -+.|+.++..-. .|   
T Consensus        74 V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~A-Rv---  149 (561)
T COG5354          74 VKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVA-RV---  149 (561)
T ss_pred             ceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhh-hh---
Confidence            5566777 456888866543               48899964 6777777766554  33 566776543211 12   


Q ss_pred             cCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCC--CEEE-----EeeCCCcEEEEecCCCCCCCccce
Q 036314           87 SKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSG--NMVC-----SGSWDCTISLWRTNDSDAAGNQVS  159 (347)
Q Consensus        87 s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~--~~l~-----sgs~Dg~I~iwd~~~~~~~~~~~~  159 (347)
                       -...+.++++ +.....     .+.+.++  ...+...+++|.+  ..|+     ..+.++++++|.+........ ..
T Consensus       150 -v~~sl~i~e~-t~n~~~-----~p~~~lr--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~t-k~  219 (561)
T COG5354         150 -VGSSLYIHEI-TDNIEE-----HPFKNLR--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVT-KN  219 (561)
T ss_pred             -ccCeEEEEec-CCcccc-----Cchhhcc--ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeee-ee
Confidence             2236999997 333221     1222222  2446666777763  3333     368889999998874321100 00


Q ss_pred             eee----------------------ccCCC------ccccccccccccccccCCccceEEEEe-CCCCe--EEEEecCCc
Q 036314          160 IKK----------------------RKGNN------QVEEPQLEGEAISTLVGHTQCVSSVVW-PQQET--IYSASWDHS  208 (347)
Q Consensus       160 ~~~----------------------~~~~~------~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~--l~s~s~dg~  208 (347)
                      ..+                      .+.+.      .++.-..+...+.....-.++|..++| |.+..  +++|..+-.
T Consensus       220 lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~  299 (561)
T COG5354         220 LFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPAS  299 (561)
T ss_pred             eEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceeccccccceeeeecccCCceeEEecccccc
Confidence            000                      00000      000001111122222344678999999 44444  566678889


Q ss_pred             EEEEECCCCceeeeeeeCeeeEEEEeeCCCCcEEEEec--CCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCe
Q 036314          209 VRTWDVEMGKDLSDIFCGKALNCIDIGGEGSALIAAGG--SDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWF  286 (347)
Q Consensus       209 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~--~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~  286 (347)
                      +.++|++..  +........-+.+.|+|.....|.+|-  ..|.+.+||...  +......+.+-.  ..-|.|+|++..
T Consensus       300 ~s~~~lr~N--l~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~--rf~~~~~~~~~n--~s~~~wspd~qF  373 (561)
T COG5354         300 VSVFDLRGN--LRFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAG--RFKVAGAFNGLN--TSYCDWSPDGQF  373 (561)
T ss_pred             eeecccccc--eEEecCCcccccccccCcccEEEEecCCccccceEEeccCC--ceEEEEEeecCC--ceEeeccCCceE
Confidence            999999865  332222333345666665544444432  247899999763  222232343332  355889999975


Q ss_pred             EEEEE-e----CCCcEEEEEcCCC
Q 036314          287 HLISA-S----YDGKVMLWDLRTA  305 (347)
Q Consensus       287 ~l~s~-s----~D~~i~lwd~~~~  305 (347)
                      +.... |    .|..|+|||+...
T Consensus       374 ~~~~~ts~k~~~Dn~i~l~~v~g~  397 (561)
T COG5354         374 YDTDTTSEKLRVDNSIKLWDVYGA  397 (561)
T ss_pred             EEecCCCcccccCcceEEEEecCc
Confidence            43322 2    2788999999753

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.19  E-value=0.00032  Score=66.24  Aligned_cols=236  Identities=13%  Similarity=0.191  Sum_probs=150.5

Q ss_pred             eEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCC------------CCEE
Q 036314           67 VSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETS------------GNMV  134 (347)
Q Consensus        67 V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~------------~~~l  134 (347)
                      -.+++|++.+     .+|=|+. ..|-+-|..+-         +.++.+.-|...|+.|.|.|-            ..+|
T Consensus        18 ~~A~Dw~~~G-----LiAygsh-slV~VVDs~s~---------q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lli   82 (1062)
T KOG1912|consen   18 RNAADWSPSG-----LIAYGSH-SLVSVVDSRSL---------QLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLI   82 (1062)
T ss_pred             ccccccCccc-----eEEEecC-ceEEEEehhhh---------hhhhccccCccceeEEEeccCCCchhccCccccceeE
Confidence            4678888743     3454444 36777775433         345667789999999988642            2467


Q ss_pred             EEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEe----CCC-CeEEEEecCCcE
Q 036314          135 CSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW----PQQ-ETIYSASWDHSV  209 (347)
Q Consensus       135 ~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~----~~~-~~l~s~s~dg~v  209 (347)
                      |++...|.|.+||....                         ..+..+..|.+.+..+.|    ++. ..|+....-.++
T Consensus        83 AsaD~~GrIil~d~~~~-------------------------s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~l  137 (1062)
T KOG1912|consen   83 ASADISGRIILVDFVLA-------------------------SVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTL  137 (1062)
T ss_pred             EeccccCcEEEEEehhh-------------------------hhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEE
Confidence            78888899999997542                         223455667778888887    233 457777888899


Q ss_pred             EEEECCCCceeeeee-eCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCC---CCCCCCeEEe-cCCCC-----------
Q 036314          210 RTWDVEMGKDLSDIF-CGKALNCIDIGGEGSALIAAGGSDPILRIWDPRK---PGTSAPVFQF-SSHNS-----------  273 (347)
Q Consensus       210 ~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~---~~~~~~~~~~-~~h~~-----------  273 (347)
                      .+|+..+|...=+.. .+....|+.+.|-+.+.+..-+..|.+-+-+.-.   +..+...+++ ..|.+           
T Consensus       138 vLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~  217 (1062)
T KOG1912|consen  138 VLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATG  217 (1062)
T ss_pred             EEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhcc
Confidence            999999887653322 3456788888888777776666677776665321   1111112222 22222           


Q ss_pred             --------------CeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecCCCCeEEEEeecC-CC--EEEEccCCc
Q 036314          274 --------------WISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKVLCADWWR-GD--SVISGGVDS  336 (347)
Q Consensus       274 --------------~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~-~~--~l~s~s~D~  336 (347)
                                    +...++|+|.-.. ++=......+.|+|++-..++.+..-..+.+.-++|-| ++  .|-..=.||
T Consensus       218 ns~ts~~~sa~fity~a~faf~p~~rn-~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG  296 (1062)
T KOG1912|consen  218 NSTTSTPASAYFITYCAQFAFSPHWRN-ILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNG  296 (1062)
T ss_pred             ccccCCCcchhHHHHHHhhhcChhhhc-eEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCC
Confidence                          1122566776544 33345667899999998888777544444444556633 33  366777899


Q ss_pred             eEEEeec
Q 036314          337 KLCVSSG  343 (347)
Q Consensus       337 ~v~vw~~  343 (347)
                      .+.+|..
T Consensus       297 ~ltirvr  303 (1062)
T KOG1912|consen  297 RLTIRVR  303 (1062)
T ss_pred             eEEEEEe
Confidence            9999974

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.13  E-value=0.0045  Score=53.64  Aligned_cols=268  Identities=12%  Similarity=0.123  Sum_probs=148.4

Q ss_pred             CCCcCCceeeccCCCC-CEEEEEecC---CeEEEEcC--C-CeEEE----EeeccCCceEEEEEeecCCCceEEEEEc-c
Q 036314           20 PSLHDDWVSAVDGSNP-GFILTGCYD---NLGRVWKA--G-GVCTH----ILEGHCGAVSSVNIIKSDGLKYVTVATA-S   87 (347)
Q Consensus        20 ~~~h~~~v~~~~~~~~-~~l~sg~~d---~~i~iw~~--~-~~~~~----~l~~h~~~V~~v~~~~~~~~~~~~l~s~-s   87 (347)
                      ...+....+-+++++. +.|.++-.+   |.|--+..  . |....    .+.|+.  -..+++++++.    +|+++ .
T Consensus        35 ~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~--p~yvsvd~~g~----~vf~AnY  108 (346)
T COG2706          35 LVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSP--PCYVSVDEDGR----FVFVANY  108 (346)
T ss_pred             hccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCC--CeEEEECCCCC----EEEEEEc
Confidence            4456677777887744 466666554   55555543  2 44322    122332  26677777442    44444 4


Q ss_pred             CCCcEEEEeccc-cccccCccccceeeeeeccccc----------eEEEEEeCCCCEEEEe--eCCCcEEEEecCCCCCC
Q 036314           88 KDQTLRLWKFDA-EELVNHPKKIRSFKILRGHKAS----------VHSIAAETSGNMVCSG--SWDCTISLWRTNDSDAA  154 (347)
Q Consensus        88 ~Dg~v~~wd~~~-~~~~~~~~~~~~~~~~~~h~~~----------V~~v~~s~~~~~l~sg--s~Dg~I~iwd~~~~~~~  154 (347)
                      .-|.|.++.+.. +.+.       .......|..+          ++...|.|+++++++.  +.| .|.+|++.++...
T Consensus       109 ~~g~v~v~p~~~dG~l~-------~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~D-ri~~y~~~dg~L~  180 (346)
T COG2706         109 HSGSVSVYPLQADGSLQ-------PVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTD-RIFLYDLDDGKLT  180 (346)
T ss_pred             cCceEEEEEcccCCccc-------cceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCc-eEEEEEcccCccc
Confidence            568999999865 3221       11112234444          8889999999998876  455 6889998865332


Q ss_pred             CccceeeeccCCCccccccccccccccccCCccceEEEEe-CCCCeEE-EEecCCcEEEEECCCC-ceeeeeee------
Q 036314          155 GNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW-PQQETIY-SASWDHSVRTWDVEMG-KDLSDIFC------  225 (347)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~l~-s~s~dg~v~vwd~~~~-~~~~~~~~------  225 (347)
                      .....                     .++ ....-+-++| |+++..+ ..=.+++|.+|..... ..+..++.      
T Consensus       181 ~~~~~---------------------~v~-~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~  238 (346)
T COG2706         181 PADPA---------------------EVK-PGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPE  238 (346)
T ss_pred             ccccc---------------------ccC-CCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCcc
Confidence            11100                     001 1112244666 5666643 4456889999988763 22333321      


Q ss_pred             ----CeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCC-CCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEE
Q 036314          226 ----GKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGT-SAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLW  300 (347)
Q Consensus       226 ----~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~-~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lw  300 (347)
                          ......+.+++++.-+.|+--....|.+|.+..... .......+-+...-+...++|.+..++|+.-.+..|.+|
T Consensus       239 dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf  318 (346)
T COG2706         239 DFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVF  318 (346)
T ss_pred             ccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEE
Confidence                123455677666554444443455888887764322 112233344555567889999997655555556689999


Q ss_pred             EcCC--Cccceeec-CCCCeEEEEee
Q 036314          301 DLRT--AWPLSVID-SHKDKVLCADW  323 (347)
Q Consensus       301 d~~~--~~~~~~~~-~h~~~v~~~~~  323 (347)
                      .++.  |+...... .+.....||.|
T Consensus       319 ~~d~~TG~L~~~~~~~~~p~Pvcv~f  344 (346)
T COG2706         319 ERDKETGRLTLLGRYAVVPEPVCVKF  344 (346)
T ss_pred             EEcCCCceEEecccccCCCCcEEEEE
Confidence            8764  33211111 22334566666

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.10  E-value=0.0027  Score=53.66  Aligned_cols=215  Identities=16%  Similarity=0.093  Sum_probs=113.6

Q ss_pred             CCeEEEEcC-CCeEEEEeec---cCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeeeecc-
Q 036314           44 DNLGRVWKA-GGVCTHILEG---HCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGH-  118 (347)
Q Consensus        44 d~~i~iw~~-~~~~~~~l~~---h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h-  118 (347)
                      +|+|+.||. .|+.+....-   ....+ +. ..+.++    .+++++.++.|..||..+++.+-.       ..+.+. 
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~-~~-~~~~~~----~v~~~~~~~~l~~~d~~tG~~~W~-------~~~~~~~   68 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPGIGGPV-AT-AVPDGG----RVYVASGDGNLYALDAKTGKVLWR-------FDLPGPI   68 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSSCSSEE-ET-EEEETT----EEEEEETTSEEEEEETTTSEEEEE-------EECSSCG
T ss_pred             CCEEEEEECCCCCEEEEEECCCCCCCcc-ce-EEEeCC----EEEEEcCCCEEEEEECCCCCEEEE-------eeccccc
Confidence            678899997 6776665432   22222 11 222232    467778999999999987764211       011111 


Q ss_pred             ccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEeCCCC
Q 036314          119 KASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWPQQE  198 (347)
Q Consensus       119 ~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~  198 (347)
                      ...    . ..++..++.++.|+.+..+|..++......    .... .         ...   ......  ... ..++
T Consensus        69 ~~~----~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~----~~~~-~---------~~~---~~~~~~--~~~-~~~~  123 (238)
T PF13360_consen   69 SGA----P-VVDGGRVYVGTSDGSLYALDAKTGKVLWSI----YLTS-S---------PPA---GVRSSS--SPA-VDGD  123 (238)
T ss_dssp             GSG----E-EEETTEEEEEETTSEEEEEETTTSCEEEEE----EE-S-S---------CTC---STB--S--EEE-EETT
T ss_pred             cce----e-eecccccccccceeeeEecccCCcceeeee----cccc-c---------ccc---cccccc--Cce-EecC
Confidence            111    1 123455666778889999997776431110    0000 0         000   000001  111 1367


Q ss_pred             eEEEEecCCcEEEEECCCCceeeeeeeCe-e-----------eEEEEeeCCCCcEEEEecCCCc-EEEEeCCCCCCCCCe
Q 036314          199 TIYSASWDHSVRTWDVEMGKDLSDIFCGK-A-----------LNCIDIGGEGSALIAAGGSDPI-LRIWDPRKPGTSAPV  265 (347)
Q Consensus       199 ~l~s~s~dg~v~vwd~~~~~~~~~~~~~~-~-----------~~~~~~~~~~~~~la~~~~d~~-i~iwd~~~~~~~~~~  265 (347)
                      .++.+..++.|..+|+++|+.+-...... .           ...+.+  .++ .+..+..++. +.+ |++...   .+
T Consensus       124 ~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~v~~~~~~g~~~~~-d~~tg~---~~  196 (238)
T PF13360_consen  124 RLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVI--SDG-RVYVSSGDGRVVAV-DLATGE---KL  196 (238)
T ss_dssp             EEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEEC--CTT-EEEEECCTSSEEEE-ETTTTE---EE
T ss_pred             EEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEE--ECC-EEEEEcCCCeEEEE-ECCCCC---EE
Confidence            78888889999999999998765543322 1           112222  233 4444555664 555 887532   12


Q ss_pred             EEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCcc
Q 036314          266 FQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWP  307 (347)
Q Consensus       266 ~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~  307 (347)
                      ...  .......+ ..+.+.. |+.++.++.+..||+++++.
T Consensus       197 w~~--~~~~~~~~-~~~~~~~-l~~~~~~~~l~~~d~~tG~~  234 (238)
T PF13360_consen  197 WSK--PISGIYSL-PSVDGGT-LYVTSSDGRLYALDLKTGKV  234 (238)
T ss_dssp             EEE--CSS-ECEC-EECCCTE-EEEEETTTEEEEEETTTTEE
T ss_pred             EEe--cCCCccCC-ceeeCCE-EEEEeCCCEEEEEECCCCCE
Confidence            222  22223332 2244444 66666999999999999864

...

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.07  E-value=0.0054  Score=52.23  Aligned_cols=212  Identities=14%  Similarity=0.088  Sum_probs=120.9

Q ss_pred             EEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEe-CCCCEEEEeeCCCcEEEEec
Q 036314           70 VNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAE-TSGNMVCSGSWDCTISLWRT  148 (347)
Q Consensus        70 v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s-~~~~~l~sgs~Dg~I~iwd~  148 (347)
                      +.|.+..+   .++.+.-..+.|..|+..+++.          ..+..  .....+++. +++.+++ +..+ .+.++|.
T Consensus         5 p~~d~~~g---~l~~~D~~~~~i~~~~~~~~~~----------~~~~~--~~~~G~~~~~~~g~l~v-~~~~-~~~~~d~   67 (246)
T PF08450_consen    5 PVWDPRDG---RLYWVDIPGGRIYRVDPDTGEV----------EVIDL--PGPNGMAFDRPDGRLYV-ADSG-GIAVVDP   67 (246)
T ss_dssp             EEEETTTT---EEEEEETTTTEEEEEETTTTEE----------EEEES--SSEEEEEEECTTSEEEE-EETT-CEEEEET
T ss_pred             eEEECCCC---EEEEEEcCCCEEEEEECCCCeE----------EEEec--CCCceEEEEccCCEEEE-EEcC-ceEEEec
Confidence            45554322   3566666778899998876532          11221  126677777 6655555 4444 4455576


Q ss_pred             CCCCCCCccceeeeccCCCccccccccccccccc--cC-CccceEEEEe-CCCCeEEEEecC--------CcEEEEECCC
Q 036314          149 NDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTL--VG-HTQCVSSVVW-PQQETIYSASWD--------HSVRTWDVEM  216 (347)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-h~~~v~~~~~-~~~~~l~s~s~d--------g~v~vwd~~~  216 (347)
                      .++...                       .+...  .. .....+.+++ +++...++....        |.|..++.. 
T Consensus        68 ~~g~~~-----------------------~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-  123 (246)
T PF08450_consen   68 DTGKVT-----------------------VLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-  123 (246)
T ss_dssp             TTTEEE-----------------------EEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-
T ss_pred             CCCcEE-----------------------EEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-
Confidence            653110                       01111  11 2234566776 455544444333        446666665 


Q ss_pred             CceeeeeeeCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCC-CC---CeEEecCCCCCeeEEEeCCCCCeEEEEEe
Q 036314          217 GKDLSDIFCGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGT-SA---PVFQFSSHNSWISACKWHNKSWFHLISAS  292 (347)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~-~~---~~~~~~~h~~~v~~v~~s~~~~~~l~s~s  292 (347)
                      ++.......-...+.+++++++..++++-+..+.|..||+..... ..   ....+.........+++..+|. +.++.-
T Consensus       124 ~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~-l~va~~  202 (246)
T PF08450_consen  124 GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGN-LWVADW  202 (246)
T ss_dssp             SEEEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS--EEEEEE
T ss_pred             CeEEEEecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCC-EEEEEc
Confidence            433222222234578899888776777888889999999864332 11   1122233333467789988884 455555


Q ss_pred             CCCcEEEEEcCCCccceeecCCCCeEEEEeec
Q 036314          293 YDGKVMLWDLRTAWPLSVIDSHKDKVLCADWW  324 (347)
Q Consensus       293 ~D~~i~lwd~~~~~~~~~~~~h~~~v~~~~~~  324 (347)
                      ..+.|.++|.+ |+.+..+.--...+++++|.
T Consensus       203 ~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fg  233 (246)
T PF08450_consen  203 GGGRIVVFDPD-GKLLREIELPVPRPTNCAFG  233 (246)
T ss_dssp             TTTEEEEEETT-SCEEEEEE-SSSSEEEEEEE
T ss_pred             CCCEEEEECCC-ccEEEEEcCCCCCEEEEEEE
Confidence            78899999998 77777665444588999994

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.02  E-value=0.0033  Score=52.84  Aligned_cols=192  Identities=9%  Similarity=0.071  Sum_probs=105.3

Q ss_pred             eeccCCC-CCEEEEEecCCeEEEEcCCCeEEEEeecc-------CCceEEEEEeecCCCc--eEEEEEccCCCcEEEEec
Q 036314           28 SAVDGSN-PGFILTGCYDNLGRVWKAGGVCTHILEGH-------CGAVSSVNIIKSDGLK--YVTVATASKDQTLRLWKF   97 (347)
Q Consensus        28 ~~~~~~~-~~~l~sg~~d~~i~iw~~~~~~~~~l~~h-------~~~V~~v~~~~~~~~~--~~~l~s~s~Dg~v~~wd~   97 (347)
                      +-+++|+ +.+||-+...|+|+++|+.|..+..+..-       ...|..+.|.+.....  ...|+.-..+|.++-|-+
T Consensus        47 Rkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~v  126 (282)
T PF15492_consen   47 RKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLV  126 (282)
T ss_pred             eEEEECCCCcEEEEEcCCCeEEEEecccceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEE
Confidence            4466774 56889899999999999876554443321       2456667676533111  124566678888888887


Q ss_pred             cccccccCccccceee--eee-ccccceEEEEEeCCCCEEEEeeC-CC----------cEEEEecCCCCCCCccceeeec
Q 036314           98 DAEELVNHPKKIRSFK--ILR-GHKASVHSIAAETSGNMVCSGSW-DC----------TISLWRTNDSDAAGNQVSIKKR  163 (347)
Q Consensus        98 ~~~~~~~~~~~~~~~~--~~~-~h~~~V~~v~~s~~~~~l~sgs~-Dg----------~I~iwd~~~~~~~~~~~~~~~~  163 (347)
                      ..++-    +..+...  .|. .+...|.++.++|..++|+.||. ..          -+.-|++-++....+.+.....
T Consensus       127 s~gt~----q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~  202 (282)
T PF15492_consen  127 SVGTN----QGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSED  202 (282)
T ss_pred             EcccC----CcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCc
Confidence            43321    1111111  222 24778999999999887765543 22          2455655443322111100000


Q ss_pred             cCCCcccc-ccccccccccc---cCCccceEEEEe-CCCCeEEEEecCCcEEEEECCCCceeeee
Q 036314          164 KGNNQVEE-PQLEGEAISTL---VGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDI  223 (347)
Q Consensus       164 ~~~~~~~~-~~~~~~~~~~~---~~h~~~v~~~~~-~~~~~l~s~s~dg~v~vwd~~~~~~~~~~  223 (347)
                      ........ ..+.....+.+   ....+.|..+.. |++..|++.+.+|.|.+|++..-+....+
T Consensus       203 ~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W  267 (282)
T PF15492_consen  203 DITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSW  267 (282)
T ss_pred             cccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhccc
Confidence            00000000 00000000001   112456777765 78899999999999999999876655544

>PRK04043 tolB translocation protein TolB; Provisional

Probab=97.99  E-value=0.0023  Score=58.92  Aligned_cols=175  Identities=6%  Similarity=-0.038  Sum_probs=92.9

Q ss_pred             ceEEEEEeCCCCE-EEEeeCC---CcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEe-C
Q 036314          121 SVHSIAAETSGNM-VCSGSWD---CTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW-P  195 (347)
Q Consensus       121 ~V~~v~~s~~~~~-l~sgs~D---g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~  195 (347)
                      ....-.|+|||+. ++-.+.+   ..|.++|+.++..                       ..+..   ..+......| |
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~-----------------------~~lt~---~~g~~~~~~~SP  242 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKK-----------------------EKIAS---SQGMLVVSDVSK  242 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcE-----------------------EEEec---CCCcEEeeEECC
Confidence            6677899999984 5543433   4577777754321                       11111   1122333445 5


Q ss_pred             CCCeEE-EEecC--CcEEEEECCCCceeeeeeeCe-eeEEEEeeCCCCcEEEEecCCC--cEEEEeCCCCCCCCCeEEec
Q 036314          196 QQETIY-SASWD--HSVRTWDVEMGKDLSDIFCGK-ALNCIDIGGEGSALIAAGGSDP--ILRIWDPRKPGTSAPVFQFS  269 (347)
Q Consensus       196 ~~~~l~-s~s~d--g~v~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~la~~~~d~--~i~iwd~~~~~~~~~~~~~~  269 (347)
                      +++.++ +.+.+  ..|.++|+.++.. ..+.... ......|+|++..++.+....+  .|.+.|+..... . ..+..
T Consensus       243 DG~~la~~~~~~g~~~Iy~~dl~~g~~-~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~-~-rlt~~  319 (419)
T PRK04043        243 DGSKLLLTMAPKGQPDIYLYDTNTKTL-TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSV-E-QVVFH  319 (419)
T ss_pred             CCCEEEEEEccCCCcEEEEEECCCCcE-EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCe-E-eCccC
Confidence            776654 44434  3566778877653 3333222 1233467777666655554444  566667753221 1 11222


Q ss_pred             CCCCCeeEEEeCCCCCeEEEEEeCC--------CcEEEEEcCCCccceeecCCCCeEEEEeecC-CCEEE
Q 036314          270 SHNSWISACKWHNKSWFHLISASYD--------GKVMLWDLRTAWPLSVIDSHKDKVLCADWWR-GDSVI  330 (347)
Q Consensus       270 ~h~~~v~~v~~s~~~~~~l~s~s~D--------~~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~l~  330 (347)
                      +.  +  ...|+|+|..++.+...+        ..|.+.|+.++.. ..+.... ......|+| |+.|+
T Consensus       320 g~--~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~~-~~~~p~~SPDG~~I~  383 (419)
T PRK04043        320 GK--N--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTANG-VNQFPRFSSDGGSIM  383 (419)
T ss_pred             CC--c--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCCCC-CcCCeEECCCCCEEE
Confidence            22  2  248999998755555443        3678888887753 4443321 222467875 55443

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.97  E-value=0.0022  Score=61.42  Aligned_cols=210  Identities=13%  Similarity=0.169  Sum_probs=125.6

Q ss_pred             EEEEccCCCcEEEEeccccccccCccccceeeeeeccccc-eEEEEEeCCCCEEEEeeCCCc-----EEEEecCCCCCCC
Q 036314           82 TVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKAS-VHSIAAETSGNMVCSGSWDCT-----ISLWRTNDSDAAG  155 (347)
Q Consensus        82 ~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~-V~~v~~s~~~~~l~sgs~Dg~-----I~iwd~~~~~~~~  155 (347)
                      .++-|++||.|-+.+-.          .+.+.-+.+|... |..+-...+..+|++.+.|..     ++||+++..+...
T Consensus        37 ~vvigt~~G~V~~Ln~s----------~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~  106 (933)
T KOG2114|consen   37 SVVIGTADGRVVILNSS----------FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNN  106 (933)
T ss_pred             eEEEeeccccEEEeccc----------ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCC
Confidence            58899999987776532          2233456666666 443333333368888887765     9999987542111


Q ss_pred             ccceeeeccCCCcccccccccc-ccccccC--CccceEEEEeC-CCCeEEEEecCCcEEEEE--CCC--Ccee-eeeeeC
Q 036314          156 NQVSIKKRKGNNQVEEPQLEGE-AISTLVG--HTQCVSSVVWP-QQETIYSASWDHSVRTWD--VEM--GKDL-SDIFCG  226 (347)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--h~~~v~~~~~~-~~~~l~s~s~dg~v~vwd--~~~--~~~~-~~~~~~  226 (347)
                      .+               ++.+. .+.+...  ...++.+++.+ +-..++.|-.||.|.++.  +..  +... ......
T Consensus       107 sP---------------~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~  171 (933)
T KOG2114|consen  107 SP---------------QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGK  171 (933)
T ss_pred             Cc---------------ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCC
Confidence            00               00000 0111111  23456667664 446788888999998873  211  1111 111234


Q ss_pred             eeeEEEEeeCCCCc-EEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCC
Q 036314          227 KALNCIDIGGEGSA-LIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTA  305 (347)
Q Consensus       227 ~~~~~~~~~~~~~~-~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~  305 (347)
                      .+++.+.+..++.. ++++.  -..|.+|.+..  +......+..|+..+.|..+++.... +++|+ +.-+.+||....
T Consensus       172 ~pITgL~~~~d~~s~lFv~T--t~~V~~y~l~g--r~p~~~~ld~~G~~lnCss~~~~t~q-fIca~-~e~l~fY~sd~~  245 (933)
T KOG2114|consen  172 EPITGLALRSDGKSVLFVAT--TEQVMLYSLSG--RTPSLKVLDNNGISLNCSSFSDGTYQ-FICAG-SEFLYFYDSDGR  245 (933)
T ss_pred             CCceeeEEecCCceeEEEEe--cceeEEEEecC--CCcceeeeccCCccceeeecCCCCcc-EEEec-CceEEEEcCCCc
Confidence            57888888766665 23333  36799999873  22234557888888999999877653 55444 346999999877


Q ss_pred             ccceeec-CCCCeEEEEe
Q 036314          306 WPLSVID-SHKDKVLCAD  322 (347)
Q Consensus       306 ~~~~~~~-~h~~~v~~~~  322 (347)
                      .+..++. ||+-....+.
T Consensus       246 ~~cfaf~~g~kk~~~~~~  263 (933)
T KOG2114|consen  246 GPCFAFEVGEKKEMLVFS  263 (933)
T ss_pred             ceeeeecCCCeEEEEEEe
Confidence            7777887 7765544433

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=97.97  E-value=0.00014  Score=64.34  Aligned_cols=203  Identities=16%  Similarity=0.106  Sum_probs=129.5

Q ss_pred             ccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEeC-
Q 036314          117 GHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWP-  195 (347)
Q Consensus       117 ~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-  195 (347)
                      -|.+.|+.+. ..-.+++.+++.||.++.|.-....  +                    -+.+..+..|-..+.+++.+ 
T Consensus         7 mhrd~i~hv~-~tka~fiiqASlDGh~KFWkKs~is--G--------------------vEfVKhFraHL~~I~sl~~S~   63 (558)
T KOG0882|consen    7 MHRDVITHVF-PTKAKFIIQASLDGHKKFWKKSRIS--G--------------------VEFVKHFRAHLGVILSLAVSY   63 (558)
T ss_pred             cccceeeeEe-eehhheEEeeecchhhhhcCCCCcc--c--------------------eeehhhhHHHHHHHHhhhccc
Confidence            4777777664 3345799999999999999532100  0                    01233445566667777655 


Q ss_pred             CCCeEEEEec-CCcEEEEECCCCceeeeeee---CeeeEEEEeeCCCCcEEEEe-cCCCcEEEEeCCCCCCCCCeEEecC
Q 036314          196 QQETIYSASW-DHSVRTWDVEMGKDLSDIFC---GKALNCIDIGGEGSALIAAG-GSDPILRIWDPRKPGTSAPVFQFSS  270 (347)
Q Consensus       196 ~~~~l~s~s~-dg~v~vwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~la~~-~~d~~i~iwd~~~~~~~~~~~~~~~  270 (347)
                      ++-.+.|++. |..++++|+++-..+.-+..   +..+.++.-..+...++|.+ -.++.+.++|.+....+ ....-.-
T Consensus        64 dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q-~~~fkkl  142 (558)
T KOG0882|consen   64 DGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQ-DGYFKKL  142 (558)
T ss_pred             cceeEeeccCcccceeEEEeeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCc-cceeccc
Confidence            4555677677 99999999987554432221   22233322211112244443 46789999998754422 2334456


Q ss_pred             CCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCC-Cccce--------------eecCCCCeEEEEeecC-CCEEEEccC
Q 036314          271 HNSWISACKWHNKSWFHLISASYDGKVMLWDLRT-AWPLS--------------VIDSHKDKVLCADWWR-GDSVISGGV  334 (347)
Q Consensus       271 h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~-~~~~~--------------~~~~h~~~v~~~~~~~-~~~l~s~s~  334 (347)
                      |.++|..+.+++-+.. ++|....|.|.-|.... -+.+.              .+.-.+....++.|+| |.++++-+.
T Consensus       143 H~sPV~~i~y~qa~Ds-~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~  221 (558)
T KOG0882|consen  143 HFSPVKKIRYNQAGDS-AVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNP  221 (558)
T ss_pred             ccCceEEEEeeccccc-eeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCc
Confidence            9999999999998864 78888889999998873 11110              1111234567889975 778999999


Q ss_pred             CceEEEeecc
Q 036314          335 DSKLCVSSGV  344 (347)
Q Consensus       335 D~~v~vw~~~  344 (347)
                      |..|++....
T Consensus       222 DrkVR~F~~K  231 (558)
T KOG0882|consen  222 DRKVRGFVFK  231 (558)
T ss_pred             ccEEEEEEec
Confidence            9999987643

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=97.91  E-value=0.0026  Score=57.01  Aligned_cols=143  Identities=13%  Similarity=0.000  Sum_probs=92.7

Q ss_pred             EEeCCCCeEEEEecCCcEEEEECCCCceeeeeeeCeeeEEEEeeCCCCcEEEEecCCC-cEEEEeCCCCCCCCCeEEecC
Q 036314          192 VVWPQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEGSALIAAGGSDP-ILRIWDPRKPGTSAPVFQFSS  270 (347)
Q Consensus       192 ~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~d~-~i~iwd~~~~~~~~~~~~~~~  270 (347)
                      .+..+|++++..|... .-+.+...+-.+ .+.....+....+..+.. -++.|..|| .+-+||.+..    .+..+.+
T Consensus       327 fa~~~Gd~ia~VSRGk-aFi~~~~~~~~i-qv~~~~~VrY~r~~~~~e-~~vigt~dgD~l~iyd~~~~----e~kr~e~  399 (668)
T COG4946         327 FAVVNGDYIALVSRGK-AFIMRPWDGYSI-QVGKKGGVRYRRIQVDPE-GDVIGTNDGDKLGIYDKDGG----EVKRIEK  399 (668)
T ss_pred             hccCCCcEEEEEecCc-EEEECCCCCeeE-EcCCCCceEEEEEccCCc-ceEEeccCCceEEEEecCCc----eEEEeeC
Confidence            3335788888877554 444443333222 222233455555544433 567788888 9999998742    3566777


Q ss_pred             CCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecCCCCeEEEEeecCCC-EEEEccCC----ceEEEee
Q 036314          271 HNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKVLCADWWRGD-SVISGGVD----SKLCVSS  342 (347)
Q Consensus       271 h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~s~D----~~v~vw~  342 (347)
                      .-+.|.++..+|+|.. ++.+-....+.+.|++++.+...-+...+.|+..+|+|.. .+|=+=.+    ..|+|++
T Consensus       400 ~lg~I~av~vs~dGK~-~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklyd  475 (668)
T COG4946         400 DLGNIEAVKVSPDGKK-VVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYD  475 (668)
T ss_pred             CccceEEEEEcCCCcE-EEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEe
Confidence            8889999999999864 7777777889999999986443334456788999998744 56644333    4455554

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.90  E-value=5.2e-06  Score=76.20  Aligned_cols=206  Identities=20%  Similarity=0.242  Sum_probs=122.2

Q ss_pred             eEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCC-CCEEEEe----eCCC
Q 036314           67 VSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETS-GNMVCSG----SWDC  141 (347)
Q Consensus        67 V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~-~~~l~sg----s~Dg  141 (347)
                      +.++++....  +.-.++.|..+|.|-+-.+....-       ......++|..++++++|++- .+.||.|    -.|.
T Consensus        59 ~kcva~~y~~--d~cIlavG~atG~I~l~s~r~~hd-------Ss~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds  129 (783)
T KOG1008|consen   59 VKCVASFYGN--DRCILAVGSATGNISLLSVRHPHD-------SSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDS  129 (783)
T ss_pred             ceeehhhcCC--chhhhhhccccCceEEeecCCccc-------ccceecccccccccccccccccHHHHHhhhhhhcccC
Confidence            4455544322  223678889999998887643211       112345678899999999774 4566655    2467


Q ss_pred             cEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEeC-CCCeEEEEecCCcEEEEECCCCcee
Q 036314          142 TISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWP-QQETIYSASWDHSVRTWDVEMGKDL  220 (347)
Q Consensus       142 ~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~l~s~s~dg~v~vwd~~~~~~~  220 (347)
                      .+.|||+.+.-..             +.+.+.+.+   .++.+    ..+++|- +.+.+++|...+.++++|++.....
T Consensus       130 ~~~Iwdi~s~ltv-------------Pke~~~fs~---~~l~g----qns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~  189 (783)
T KOG1008|consen  130 SLKIWDINSLLTV-------------PKESPLFSS---STLDG----QNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDS  189 (783)
T ss_pred             CccceecccccCC-------------Ccccccccc---ccccC----ccccccccCcchhhcccccchhhhhhhhhhhhh
Confidence            7999998764211             001111111   02222    2356664 5566888888889999999843221


Q ss_pred             eeeeeCeeeEEEEeeCCCCcEEEEecCCCcEEEEe-CCCCCCCCCeEEecCCCC----CeeEEEeCCCCCeEEEEEeCC-
Q 036314          221 SDIFCGKALNCIDIGGEGSALIAAGGSDPILRIWD-PRKPGTSAPVFQFSSHNS----WISACKWHNKSWFHLISASYD-  294 (347)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd-~~~~~~~~~~~~~~~h~~----~v~~v~~s~~~~~~l~s~s~D-  294 (347)
                      ......+.+..+.+.|-....+++. .|+.|.+|| .++-+.  ++..+....+    .+..++|.|....+|++.+.| 
T Consensus       190 ~~svnTk~vqG~tVdp~~~nY~cs~-~dg~iAiwD~~rnien--pl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS  266 (783)
T KOG1008|consen  190 VSSVNTKYVQGITVDPFSPNYFCSN-SDGDIAIWDTYRNIEN--PLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDS  266 (783)
T ss_pred             hhhhhhhhcccceecCCCCCceecc-ccCceeeccchhhhcc--HHHHHhhCCCCcccceeeEEeccCCcchhhhhccCc
Confidence            1111122344455555445566654 499999999 443222  2222221222    478899999877788888865 


Q ss_pred             CcEEEEEcCC
Q 036314          295 GKVMLWDLRT  304 (347)
Q Consensus       295 ~~i~lwd~~~  304 (347)
                      ++|+++|+..
T Consensus       267 ~tIrlydi~~  276 (783)
T KOG1008|consen  267 ITIRLYDICV  276 (783)
T ss_pred             ceEEEecccc
Confidence            6899999863

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=97.85  E-value=0.00053  Score=65.89  Aligned_cols=141  Identities=16%  Similarity=0.224  Sum_probs=98.6

Q ss_pred             CCCCeEEEEecCCcEEEEECCCCceeeeeeeCe-eeEEEEeeCCCCcEEEEecC---------CCcEEEEeCCCCCCCCC
Q 036314          195 PQQETIYSASWDHSVRTWDVEMGKDLSDIFCGK-ALNCIDIGGEGSALIAAGGS---------DPILRIWDPRKPGTSAP  264 (347)
Q Consensus       195 ~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~la~~~~---------d~~i~iwd~~~~~~~~~  264 (347)
                      .+++.+.+|...|+|.+-|.++.+.++++..+. .+..++.   .+++++++|.         |..|++||+|......|
T Consensus       185 ~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv---~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~P  261 (1118)
T KOG1275|consen  185 YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV---QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSP  261 (1118)
T ss_pred             ecCcEEEeecccceEEeecCCcCceeeeeeccccceeeeec---cCCeEEEeecccccccccccchhhhhhhhhhhccCC
Confidence            466889999999999999999999888886543 4555555   2346666654         56789999986544333


Q ss_pred             eEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCC-Ccc-ceee--cCCCCeEEEEeec-CCCEEEEccCCceEE
Q 036314          265 VFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRT-AWP-LSVI--DSHKDKVLCADWW-RGDSVISGGVDSKLC  339 (347)
Q Consensus       265 ~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~-~~~-~~~~--~~h~~~v~~~~~~-~~~~l~s~s~D~~v~  339 (347)
                      +. +  +.+. .-+.|.|.=...++.+|..|...+-|..+ ..+ ...+  ......+.+++++ +|+-||-|..+|.|.
T Consensus       262 I~-~--~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~  337 (1118)
T KOG1275|consen  262 IQ-F--PYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVN  337 (1118)
T ss_pred             cc-c--ccCc-hhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEe
Confidence            32 2  2221 23567777666799999999999999332 122 2222  2223458888886 588899999999999


Q ss_pred             Eee
Q 036314          340 VSS  342 (347)
Q Consensus       340 vw~  342 (347)
                      +|+
T Consensus       338 ~wa  340 (1118)
T KOG1275|consen  338 LWA  340 (1118)
T ss_pred             eec
Confidence            998

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=97.82  E-value=0.01  Score=59.28  Aligned_cols=218  Identities=14%  Similarity=0.165  Sum_probs=118.9

Q ss_pred             CceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEE
Q 036314           65 GAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTIS  144 (347)
Q Consensus        65 ~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~  144 (347)
                      +.|.++.|..+..    .++.+..+|.|.+-|.++..          +.....-..+|.+++|+||+++++-.+.++++.
T Consensus        69 ~~i~s~~fl~d~~----~i~v~~~~G~iilvd~et~~----------~eivg~vd~GI~aaswS~Dee~l~liT~~~tll  134 (1265)
T KOG1920|consen   69 DEIVSVQFLADTN----SICVITALGDIILVDPETLE----------LEIVGNVDNGISAASWSPDEELLALITGRQTLL  134 (1265)
T ss_pred             cceEEEEEecccc----eEEEEecCCcEEEEcccccc----------eeeeeeccCceEEEeecCCCcEEEEEeCCcEEE
Confidence            5788888887543    46777888899998876542          122233577899999999999999888888886


Q ss_pred             EEecCCCCCCCccce----------eeeccCCCccccccccccccc----cccCCc---------cceEEEEeC-CCCeE
Q 036314          145 LWRTNDSDAAGNQVS----------IKKRKGNNQVEEPQLEGEAIS----TLVGHT---------QCVSSVVWP-QQETI  200 (347)
Q Consensus       145 iwd~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~----~~~~h~---------~~v~~~~~~-~~~~l  200 (347)
                      +-+- +.........          +....   .-...++.|...+    ....+.         +.=.++.|. +|+++
T Consensus       135 ~mT~-~f~~i~E~~L~~d~~~~sk~v~VGw---GrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~f  210 (1265)
T KOG1920|consen  135 FMTK-DFEPIAEKPLDADDERKSKFVNVGW---GRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYF  210 (1265)
T ss_pred             EEec-cccchhccccccccccccccceecc---cccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEE
Confidence            6431 1111000000          00000   0001112111110    000011         111347785 66676


Q ss_pred             EEE----ecC-CcEEEEECCCCceeeeeeeC--eeeEEEEeeCCCCcEEEEe---cCCCcEEEEeCCCCCCCCCeEEecC
Q 036314          201 YSA----SWD-HSVRTWDVEMGKDLSDIFCG--KALNCIDIGGEGSALIAAG---GSDPILRIWDPRKPGTSAPVFQFSS  270 (347)
Q Consensus       201 ~s~----s~d-g~v~vwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~la~~---~~d~~i~iwd~~~~~~~~~~~~~~~  270 (347)
                      +..    -.+ +.|++||-+ |.. ......  ..-.+++|-| .+.++|+-   +.|+.|.+|.........-...+..
T Consensus       211 AVs~~~~~~~~RkirV~drE-g~L-ns~se~~~~l~~~LsWkP-sgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~  287 (1265)
T KOG1920|consen  211 AVSFVESETGTRKIRVYDRE-GAL-NSTSEPVEGLQHSLSWKP-SGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPL  287 (1265)
T ss_pred             EEEEEeccCCceeEEEeccc-chh-hcccCcccccccceeecC-CCCeEeeeeecCCCCcEEEEecCCccccccccCCcc
Confidence            651    233 789999976 432 222111  1234677766 45566653   4567899997542211111112223


Q ss_pred             CCCCeeEEEeCCCCCeEEEE---EeCCCcEEEEEcCC
Q 036314          271 HNSWISACKWHNKSWFHLIS---ASYDGKVMLWDLRT  304 (347)
Q Consensus       271 h~~~v~~v~~s~~~~~~l~s---~s~D~~i~lwd~~~  304 (347)
                      ....+..++|+.++. .||.   ......|++|=..+
T Consensus       288 de~~ve~L~Wns~sd-iLAv~~~~~e~~~v~lwt~~N  323 (1265)
T KOG1920|consen  288 DEKEVEELAWNSNSD-ILAVVTSNLENSLVQLWTTGN  323 (1265)
T ss_pred             cccchheeeecCCCC-ceeeeecccccceEEEEEecC
Confidence            333488999998875 4665   44555699996653

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=97.80  E-value=2.6e-05  Score=74.28  Aligned_cols=184  Identities=18%  Similarity=0.269  Sum_probs=112.7

Q ss_pred             ccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCcc
Q 036314          108 KIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQ  187 (347)
Q Consensus       108 ~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  187 (347)
                      ..+..++|+.|+..-+|++|+-+.+.|+.|+..|.|++|++.++..                         .....+|..
T Consensus      1090 RFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~-------------------------e~s~ncH~S 1144 (1516)
T KOG1832|consen 1090 RFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSM-------------------------EESVNCHQS 1144 (1516)
T ss_pred             hcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccc-------------------------ccccccccc
Confidence            3466677889999999999999999999999999999999887532                         223456777


Q ss_pred             ceEEEEeC-CCCe-EEEEecCC-cEEEEECCC-CceeeeeeeCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCC
Q 036314          188 CVSSVVWP-QQET-IYSASWDH-SVRTWDVEM-GKDLSDIFCGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSA  263 (347)
Q Consensus       188 ~v~~~~~~-~~~~-l~s~s~dg-~v~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~  263 (347)
                      +|.-+.-+ ++.+ |.++++.. -..+|++.. +...+.+.   .-.++.|+.. ...-+.|.......+||+.....  
T Consensus      1145 avT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~~~Hsf~---ed~~vkFsn~-~q~r~~gt~~d~a~~YDvqT~~~-- 1218 (1516)
T KOG1832|consen 1145 AVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGGPRHSFD---EDKAVKFSNS-LQFRALGTEADDALLYDVQTCSP-- 1218 (1516)
T ss_pred             ccccccccCCcceeeeeccccCchHHHhccccccCcccccc---ccceeehhhh-HHHHHhcccccceEEEecccCcH--
Confidence            77766632 4544 45555555 567999864 23333332   2234555322 22224455667889999874321  


Q ss_pred             CeEE-ecCC--CCC-eeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecCCCCeEEEEeecC-CCEEE
Q 036314          264 PVFQ-FSSH--NSW-ISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKVLCADWWR-GDSVI  330 (347)
Q Consensus       264 ~~~~-~~~h--~~~-v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~l~  330 (347)
                       ..+ +.+.  .++ -+...|+|++.. ++   .||  -+||+|..+.++.|...+.-+ .-.|+| |..++
T Consensus      1219 -l~tylt~~~~~~y~~n~a~FsP~D~L-Il---ndG--vLWDvR~~~aIh~FD~ft~~~-~G~FHP~g~eVI 1282 (1516)
T KOG1832|consen 1219 -LQTYLTDTVTSSYSNNLAHFSPCDTL-IL---NDG--VLWDVRIPEAIHRFDQFTDYG-GGGFHPSGNEVI 1282 (1516)
T ss_pred             -HHHhcCcchhhhhhccccccCCCcce-Ee---eCc--eeeeeccHHHHhhhhhheecc-cccccCCCceEE
Confidence             222 2111  111 245679998753 33   344  279999887777765444222 235654 44444

>smart00320 WD40 WD40 repeats

Probab=97.77  E-value=8.2e-05  Score=42.22  Aligned_cols=37  Identities=41%  Similarity=0.618  Sum_probs=32.7

Q ss_pred             eeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEe
Q 036314          111 SFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWR  147 (347)
Q Consensus       111 ~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd  147 (347)
                      +...+..|...|.++.|++++.++++++.|+.+++|+
T Consensus         4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            3455678999999999999999999999999999995

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=97.75  E-value=0.021  Score=48.63  Aligned_cols=213  Identities=11%  Similarity=0.164  Sum_probs=118.8

Q ss_pred             CCCEEEEEecCCeEEEEcCCCeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceee
Q 036314           34 NPGFILTGCYDNLGRVWKAGGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFK  113 (347)
Q Consensus        34 ~~~~l~sg~~d~~i~iw~~~~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~  113 (347)
                      ++.++++--..+.|.-|+..+.....+....  ...+.+...++   . |+.+..++ +.++|+.+++.       +.+.
T Consensus        11 ~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~--~~G~~~~~~~g---~-l~v~~~~~-~~~~d~~~g~~-------~~~~   76 (246)
T PF08450_consen   11 DGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG--PNGMAFDRPDG---R-LYVADSGG-IAVVDPDTGKV-------TVLA   76 (246)
T ss_dssp             TTEEEEEETTTTEEEEEETTTTEEEEEESSS--EEEEEEECTTS---E-EEEEETTC-EEEEETTTTEE-------EEEE
T ss_pred             CCEEEEEEcCCCEEEEEECCCCeEEEEecCC--CceEEEEccCC---E-EEEEEcCc-eEEEecCCCcE-------EEEe
Confidence            4456667667889999998765554444333  56777763332   2 44445544 56668876542       2222


Q ss_pred             eee--c-cccceEEEEEeCCCCEEEEeeCC--------CcEEEEecCCCCCCCccceeeeccCCCccccccccccccccc
Q 036314          114 ILR--G-HKASVHSIAAETSGNMVCSGSWD--------CTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTL  182 (347)
Q Consensus       114 ~~~--~-h~~~V~~v~~s~~~~~l~sgs~D--------g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (347)
                      ...  . .....+.+++.++|++.++....        |.|..++.. ..                          ...+
T Consensus        77 ~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~--------------------------~~~~  129 (246)
T PF08450_consen   77 DLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GK--------------------------VTVV  129 (246)
T ss_dssp             EEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SE--------------------------EEEE
T ss_pred             eccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-Ce--------------------------EEEE
Confidence            221  1 34557889999999988876544        234444332 10                          0011


Q ss_pred             cCCccceEEEEe-CCCCeEE-EEecCCcEEEEECCCCce-ee---ee---eeCe-eeEEEEeeCCCCcEEEEecCCCcEE
Q 036314          183 VGHTQCVSSVVW-PQQETIY-SASWDHSVRTWDVEMGKD-LS---DI---FCGK-ALNCIDIGGEGSALIAAGGSDPILR  252 (347)
Q Consensus       183 ~~h~~~v~~~~~-~~~~~l~-s~s~dg~v~vwd~~~~~~-~~---~~---~~~~-~~~~~~~~~~~~~~la~~~~d~~i~  252 (347)
                      ...-...+.++| ++++.|+ +-+..+.|..+++..... +.   .+   .... ....+++..+ +++.++....+.|.
T Consensus       130 ~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~-G~l~va~~~~~~I~  208 (246)
T PF08450_consen  130 ADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSD-GNLWVADWGGGRIV  208 (246)
T ss_dssp             EEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTT-S-EEEEEETTTEEE
T ss_pred             ecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCC-CCEEEEEcCCCEEE
Confidence            111233567887 5666665 567778888888853221 21   11   1111 2556777664 45666666788999


Q ss_pred             EEeCCCCCCCCCeEEecCCCCCeeEEEeC-CCCCeEEEEEe
Q 036314          253 IWDPRKPGTSAPVFQFSSHNSWISACKWH-NKSWFHLISAS  292 (347)
Q Consensus       253 iwd~~~~~~~~~~~~~~~h~~~v~~v~~s-~~~~~~l~s~s  292 (347)
                      ++|.+  +.  .+..+.-....+++++|. ++...+++|.+
T Consensus       209 ~~~p~--G~--~~~~i~~p~~~~t~~~fgg~~~~~L~vTta  245 (246)
T PF08450_consen  209 VFDPD--GK--LLREIELPVPRPTNCAFGGPDGKTLYVTTA  245 (246)
T ss_dssp             EEETT--SC--EEEEEE-SSSSEEEEEEESTTSSEEEEEEB
T ss_pred             EECCC--cc--EEEEEcCCCCCEEEEEEECCCCCEEEEEeC
Confidence            99976  22  233444344588999994 56556566543

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=97.70  E-value=0.014  Score=49.25  Aligned_cols=195  Identities=15%  Similarity=0.117  Sum_probs=100.1

Q ss_pred             CCCEEEEEecCCeEEEEcC-CCeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCcccccee
Q 036314           34 NPGFILTGCYDNLGRVWKA-GGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSF  112 (347)
Q Consensus        34 ~~~~l~sg~~d~~i~iw~~-~~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~  112 (347)
                      +++.+++++.++.+..||. .|+.+..+... +.+....... ++    .++.++.|+.+..+|..+++.+-..    ..
T Consensus        35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~-~~~~~~~~~~-~~----~v~v~~~~~~l~~~d~~tG~~~W~~----~~  104 (238)
T PF13360_consen   35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLP-GPISGAPVVD-GG----RVYVGTSDGSLYALDAKTGKVLWSI----YL  104 (238)
T ss_dssp             ETTEEEEEETTSEEEEEETTTSEEEEEEECS-SCGGSGEEEE-TT----EEEEEETTSEEEEEETTTSCEEEEE----EE
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEeecc-ccccceeeec-cc----ccccccceeeeEecccCCcceeeee----cc
Confidence            5667777789999999997 68776655532 2211111122 22    3556668889999998877642110    00


Q ss_pred             eeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEE
Q 036314          113 KILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSV  192 (347)
Q Consensus       113 ~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~  192 (347)
                      ....... .........++..++.+..++.|..+|+.++.......      ......     ...+..   .......+
T Consensus       105 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~------~~~~~~-----~~~~~~---~~~~~~~~  169 (238)
T PF13360_consen  105 TSSPPAG-VRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYP------VGEPRG-----SSPISS---FSDINGSP  169 (238)
T ss_dssp             -SSCTCS-TB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEE------SSTT-S-----S--EEE---ETTEEEEE
T ss_pred             ccccccc-cccccCceEecCEEEEEeccCcEEEEecCCCcEEEEee------cCCCCC-----Ccceee---ecccccce
Confidence            0000001 11112222237788888889999999988763211100      000000     000000   00011222


Q ss_pred             EeCCCCeEEEEecCCc-EEEEECCCCceeeeeeeCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCC
Q 036314          193 VWPQQETIYSASWDHS-VRTWDVEMGKDLSDIFCGKALNCIDIGGEGSALIAAGGSDPILRIWDPRK  258 (347)
Q Consensus       193 ~~~~~~~l~s~s~dg~-v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~  258 (347)
                      .+.++ .++.++.++. +.+ |+++++.+-... ....... ....+. .++.++.++.+..||++.
T Consensus       170 ~~~~~-~v~~~~~~g~~~~~-d~~tg~~~w~~~-~~~~~~~-~~~~~~-~l~~~~~~~~l~~~d~~t  231 (238)
T PF13360_consen  170 VISDG-RVYVSSGDGRVVAV-DLATGEKLWSKP-ISGIYSL-PSVDGG-TLYVTSSDGRLYALDLKT  231 (238)
T ss_dssp             ECCTT-EEEEECCTSSEEEE-ETTTTEEEEEEC-SS-ECEC-EECCCT-EEEEEETTTEEEEEETTT
T ss_pred             EEECC-EEEEEcCCCeEEEE-ECCCCCEEEEec-CCCccCC-ceeeCC-EEEEEeCCCEEEEEECCC
Confidence            33344 7777777775 555 999987442211 1122221 123444 445555899999999875

...

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=97.61  E-value=0.0028  Score=58.41  Aligned_cols=72  Identities=15%  Similarity=0.220  Sum_probs=56.9

Q ss_pred             CCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecCCCCeEEEEeecC-CCEEEEccCCceEEEeecc
Q 036314          270 SHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKVLCADWWR-GDSVISGGVDSKLCVSSGV  344 (347)
Q Consensus       270 ~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~l~s~s~D~~v~vw~~~  344 (347)
                      .....|.+++++|+.. .|+.|+.||+|.+||...+..  .+..+.-.+..++|+| |..++.|+.-|.+.+||.-
T Consensus       257 pL~s~v~~ca~sp~E~-kLvlGC~DgSiiLyD~~~~~t--~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~A  329 (545)
T PF11768_consen  257 PLPSQVICCARSPSED-KLVLGCEDGSIILYDTTRGVT--LLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMA  329 (545)
T ss_pred             ecCCcceEEecCcccc-eEEEEecCCeEEEEEcCCCee--eeeeecccceEEEEcCCCcEEEEEcCCceEEEEEee
Confidence            5667899999999986 599999999999999987632  2323333457899986 6678999999999999863

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.53  E-value=0.00012  Score=67.60  Aligned_cols=202  Identities=17%  Similarity=0.212  Sum_probs=120.9

Q ss_pred             cCCceeeccCC--CC-CEEEEEecCCeEEEEcCCCe--E-EEEeeccCCceEEEEEeecCCCceEEEEEc----cCCCcE
Q 036314           23 HDDWVSAVDGS--NP-GFILTGCYDNLGRVWKAGGV--C-THILEGHCGAVSSVNIIKSDGLKYVTVATA----SKDQTL   92 (347)
Q Consensus        23 h~~~v~~~~~~--~~-~~l~sg~~d~~i~iw~~~~~--~-~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~----s~Dg~v   92 (347)
                      ....+.+++..  .+ -+++.|..+|.|-+-.....  . -....+|...-++++|.+-+   ...||.|    -.|..+
T Consensus        55 dtqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLD---tn~LAagldkhrnds~~  131 (783)
T KOG1008|consen   55 DTQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELD---TNHLAAGLDKHRNDSSL  131 (783)
T ss_pred             cCCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceeccccccccccccccccc---HHHHHhhhhhhcccCCc
Confidence            45678888843  33 47889999999888754321  1 12355677777888887742   2245544    235679


Q ss_pred             EEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccc
Q 036314           93 RLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEP  172 (347)
Q Consensus        93 ~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  172 (347)
                      +|||+.+.--  .|+....+.  .+-.....++++-.+.+++++|..-..++++|++..-.                   
T Consensus       132 ~Iwdi~s~lt--vPke~~~fs--~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~-------------------  188 (783)
T KOG1008|consen  132 KIWDINSLLT--VPKESPLFS--SSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLD-------------------  188 (783)
T ss_pred             cceecccccC--CCccccccc--cccccCccccccccCcchhhcccccchhhhhhhhhhhh-------------------
Confidence            9999976511  111111111  12344456888888999999999999999998763210                   


Q ss_pred             cccccccccccCCccceEEEEe-C-CCCeEEEEecCCcEEEEEC-CCC-ceeeeeee-----CeeeEEEEeeCCCCcEEE
Q 036314          173 QLEGEAISTLVGHTQCVSSVVW-P-QQETIYSASWDHSVRTWDV-EMG-KDLSDIFC-----GKALNCIDIGGEGSALIA  243 (347)
Q Consensus       173 ~~~~~~~~~~~~h~~~v~~~~~-~-~~~~l~s~s~dg~v~vwd~-~~~-~~~~~~~~-----~~~~~~~~~~~~~~~~la  243 (347)
                             +...-.++.+..+.. | ..+++++ ..|+.+.+||. +.- .++..+..     .+.+..+++.|-...+++
T Consensus       189 -------~~~svnTk~vqG~tVdp~~~nY~cs-~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla  260 (783)
T KOG1008|consen  189 -------SVSSVNTKYVQGITVDPFSPNYFCS-NSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLA  260 (783)
T ss_pred             -------hhhhhhhhhcccceecCCCCCceec-cccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhh
Confidence                   000112233444443 3 3456655 45999999994 222 12222221     124677888876656677


Q ss_pred             EecCC-CcEEEEeCCC
Q 036314          244 AGGSD-PILRIWDPRK  258 (347)
Q Consensus       244 ~~~~d-~~i~iwd~~~  258 (347)
                      +.+.| ++|+++|+..
T Consensus       261 ~l~RdS~tIrlydi~~  276 (783)
T KOG1008|consen  261 VLSRDSITIRLYDICV  276 (783)
T ss_pred             hhccCcceEEEecccc
Confidence            76654 7999999864

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.45  E-value=0.035  Score=50.58  Aligned_cols=225  Identities=11%  Similarity=0.036  Sum_probs=114.3

Q ss_pred             ceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCC-cc--ce--ee--ec--c-CCCcc------ccccc-cc-cccccc
Q 036314          121 SVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAG-NQ--VS--IK--KR--K-GNNQV------EEPQL-EG-EAISTL  182 (347)
Q Consensus       121 ~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~-~~--~~--~~--~~--~-~~~~~------~~~~~-~~-~~~~~~  182 (347)
                      .|+.+.|.++..-|+.|...|.|-||........+ ..  ..  ..  +.  . ....+      ..+.+ ++ .+...+
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~   82 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL   82 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence            47889999998889999999999998754322111 00  00  00  00  0 00000      00000 00 112223


Q ss_pred             cCCccceEEEEeCCCCeEEEEecCCcEEEEECCCCceeeeeeeC---------eeeEEEEee----CCCC---cEEEEec
Q 036314          183 VGHTQCVSSVVWPQQETIYSASWDHSVRTWDVEMGKDLSDIFCG---------KALNCIDIG----GEGS---ALIAAGG  246 (347)
Q Consensus       183 ~~h~~~v~~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~---------~~~~~~~~~----~~~~---~~la~~~  246 (347)
                      ....++|.+++.++=..++.|+.+|.+.|.|+|.+..+......         ..+.++.|.    .++.   -++.+|.
T Consensus        83 ~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGT  162 (395)
T PF08596_consen   83 DAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGT  162 (395)
T ss_dssp             ---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEE
T ss_pred             eccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEe
Confidence            33467899999888889999999999999999988776553211         134455443    1222   3567888


Q ss_pred             CCCcEEEEeCCCCCCCCCeEE----ecCCCCCeeEEE-eCCCC--------------------CeEEEEEeCCCcEEEEE
Q 036314          247 SDPILRIWDPRKPGTSAPVFQ----FSSHNSWISACK-WHNKS--------------------WFHLISASYDGKVMLWD  301 (347)
Q Consensus       247 ~d~~i~iwd~~~~~~~~~~~~----~~~h~~~v~~v~-~s~~~--------------------~~~l~s~s~D~~i~lwd  301 (347)
                      ..|.+.+|.+-......-...    ...+.+.|..+. ++.+.                    +.+++ ...+..||++.
T Consensus       163 n~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vV-vvSe~~irv~~  241 (395)
T PF08596_consen  163 NSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVV-VVSESDIRVFK  241 (395)
T ss_dssp             TTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEE-EE-SSEEEEE-
T ss_pred             CCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEE-EEcccceEEEe
Confidence            899999997642111110111    113445554443 32221                    12333 34467899999


Q ss_pred             cCCCccceeecCCCCeEEEEeec------CCCEEEEccCCceEEEeecccC
Q 036314          302 LRTAWPLSVIDSHKDKVLCADWW------RGDSVISGGVDSKLCVSSGVSI  346 (347)
Q Consensus       302 ~~~~~~~~~~~~h~~~v~~~~~~------~~~~l~s~s~D~~v~vw~~~~~  346 (347)
                      .-+.+..+......-.+..+.+-      .+..|+.--.||.|++++.|+.
T Consensus       242 ~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~L  292 (395)
T PF08596_consen  242 PPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSL  292 (395)
T ss_dssp             TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT-
T ss_pred             CCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCc
Confidence            87765544333222233334442      2445888889999999999864

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.39  E-value=0.00053  Score=59.99  Aligned_cols=84  Identities=15%  Similarity=0.179  Sum_probs=68.9

Q ss_pred             cccccCCccceEEEEeCCC--CeEEEEecCCcEEEEECCCCceeeeeeeCeeeEEEEeeCCCCcEEEEecCCCcEEEEeC
Q 036314          179 ISTLVGHTQCVSSVVWPQQ--ETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEGSALIAAGGSDPILRIWDP  256 (347)
Q Consensus       179 ~~~~~~h~~~v~~~~~~~~--~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~  256 (347)
                      ...+.+|...|.+++|++.  ..+..++.+++|+|.|+++...+......+.+...+|+-++.++|.+|-..|.|.+||+
T Consensus       186 sq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaGl~nG~VlvyD~  265 (463)
T KOG1645|consen  186 SQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAGLQNGMVLVYDM  265 (463)
T ss_pred             hhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEeccCceEEEEEc
Confidence            3456678889999998643  35788999999999999998777666667788888888888889999999999999999


Q ss_pred             CCCCCC
Q 036314          257 RKPGTS  262 (347)
Q Consensus       257 ~~~~~~  262 (347)
                      +.++.+
T Consensus       266 R~~~~~  271 (463)
T KOG1645|consen  266 RQPEGP  271 (463)
T ss_pred             cCCCch
Confidence            976543

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=97.38  E-value=0.00082  Score=61.81  Aligned_cols=74  Identities=18%  Similarity=0.230  Sum_probs=56.8

Q ss_pred             ccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEe-C
Q 036314          117 GHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW-P  195 (347)
Q Consensus       117 ~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~  195 (347)
                      .....|.+++++|+.+.++.|+.||+|.+||...+..                           .+....-....++| |
T Consensus       257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t---------------------------~~~ka~~~P~~iaWHp  309 (545)
T PF11768_consen  257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVT---------------------------LLAKAEFIPTLIAWHP  309 (545)
T ss_pred             ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCee---------------------------eeeeecccceEEEEcC
Confidence            4678899999999999999999999999999764311                           11111223456778 6


Q ss_pred             CCCeEEEEecCCcEEEEECCCC
Q 036314          196 QQETIYSASWDHSVRTWDVEMG  217 (347)
Q Consensus       196 ~~~~l~s~s~dg~v~vwd~~~~  217 (347)
                      +|..++.|+..|.+.+||+.-+
T Consensus       310 ~gai~~V~s~qGelQ~FD~ALs  331 (545)
T PF11768_consen  310 DGAIFVVGSEQGELQCFDMALS  331 (545)
T ss_pred             CCcEEEEEcCCceEEEEEeecC
Confidence            7778899999999999998754

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.34  E-value=0.0089  Score=57.51  Aligned_cols=119  Identities=13%  Similarity=0.164  Sum_probs=80.3

Q ss_pred             CCcCCCCCcCCceeeccCC-CC-CEEEEEec----CCeEEEEcCCCeEEE--EeeccCCceEEEEEeecCCCceEEEEEc
Q 036314           15 QKEEEPSLHDDWVSAVDGS-NP-GFILTGCY----DNLGRVWKAGGVCTH--ILEGHCGAVSSVNIIKSDGLKYVTVATA   86 (347)
Q Consensus        15 ~~~~~~~~h~~~v~~~~~~-~~-~~l~sg~~----d~~i~iw~~~~~~~~--~l~~h~~~V~~v~~~~~~~~~~~~l~s~   86 (347)
                      +..++.-...+.+..+..- +. -++|.++.    .|.|.|+--.|...+  +.+-|   +.++.|+|.    ...|+.|
T Consensus         5 fDtkIE~~Dsdavsti~SWHPsePlfAVA~fS~er~GSVtIfadtGEPqr~Vt~P~h---atSLCWHpe----~~vLa~g   77 (1416)
T KOG3617|consen    5 FDTKIEFLDSDAVSTISSWHPSEPLFAVASFSPERGGSVTIFADTGEPQRDVTYPVH---ATSLCWHPE----EFVLAQG   77 (1416)
T ss_pred             ecceeecccccccccccccCCCCceeEEEEecCCCCceEEEEecCCCCCccccccee---hhhhccChH----HHHHhhc
Confidence            3344433445556555522 22 25665553    467888865554221  12223   557899983    3468899


Q ss_pred             cCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecC
Q 036314           87 SKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTN  149 (347)
Q Consensus        87 s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~  149 (347)
                      -+-|.+.+|.....+.         -.....|..+|..+.||++|..++|+..-|.+.+|+..
T Consensus        78 we~g~~~v~~~~~~e~---------htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   78 WEMGVSDVQKTNTTET---------HTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             cccceeEEEecCCcee---------eeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            9999999998765431         12234699999999999999999999999999999875

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.33  E-value=0.13  Score=47.29  Aligned_cols=258  Identities=13%  Similarity=0.053  Sum_probs=125.7

Q ss_pred             CCEEEEEecCCeEEEEcC-CCeEEEEeeccC--Cc--------eE-EEEEeecCCCceEEEEEccCCCcEEEEecccccc
Q 036314           35 PGFILTGCYDNLGRVWKA-GGVCTHILEGHC--GA--------VS-SVNIIKSDGLKYVTVATASKDQTLRLWKFDAEEL  102 (347)
Q Consensus        35 ~~~l~sg~~d~~i~iw~~-~~~~~~~l~~h~--~~--------V~-~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~  102 (347)
                      ++.+..++.++.+.-+|. .|+.+....-..  +.        +. .+.+.  +    ..++.++.++.+..+|.++++.
T Consensus        69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~--~----~~v~v~~~~g~l~ald~~tG~~  142 (394)
T PRK11138         69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVA--G----GKVYIGSEKGQVYALNAEDGEV  142 (394)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEE--C----CEEEEEcCCCEEEEEECCCCCC
Confidence            567777778888888886 466554432111  10        00 11111  1    2466778899999999988764


Q ss_pred             ccCccccceeeeeec--cccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccc
Q 036314          103 VNHPKKIRSFKILRG--HKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAIS  180 (347)
Q Consensus       103 ~~~~~~~~~~~~~~~--h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (347)
                      .=.     .  .+.+  ...++    ..  +..++.+..++.+.-+|..+++......      ..          ....
T Consensus       143 ~W~-----~--~~~~~~~ssP~----v~--~~~v~v~~~~g~l~ald~~tG~~~W~~~------~~----------~~~~  193 (394)
T PRK11138        143 AWQ-----T--KVAGEALSRPV----VS--DGLVLVHTSNGMLQALNESDGAVKWTVN------LD----------VPSL  193 (394)
T ss_pred             ccc-----c--cCCCceecCCE----EE--CCEEEEECCCCEEEEEEccCCCEeeeec------CC----------CCcc
Confidence            311     0  0111  11221    11  3455667778888888887764321110      00          0000


Q ss_pred             cccCCccceEEEEeCCCCeEEEEecCCcEEEEECCCCceeeeeeeCee--------eEEEEeeC--CCCcEEEEecCCCc
Q 036314          181 TLVGHTQCVSSVVWPQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKA--------LNCIDIGG--EGSALIAAGGSDPI  250 (347)
Q Consensus       181 ~~~~h~~~v~~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~--------~~~~~~~~--~~~~~la~~~~d~~  250 (347)
                      ...+...++.     .++.++.++.++.+...|.++++.+-......+        ...+...|  .++ .+..++.++.
T Consensus       194 ~~~~~~sP~v-----~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~-~vy~~~~~g~  267 (394)
T PRK11138        194 TLRGESAPAT-----AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGG-VVYALAYNGN  267 (394)
T ss_pred             cccCCCCCEE-----ECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECC-EEEEEEcCCe
Confidence            0011111111     134566677788888888888765422211100        00000001  123 3445667889


Q ss_pred             EEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecCCCCe-EEEEeecCCCEE
Q 036314          251 LRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDK-VLCADWWRGDSV  329 (347)
Q Consensus       251 i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h~~~-v~~~~~~~~~~l  329 (347)
                      +.-+|+...+.   +...  .......+..  .+. .|..++.|+.+..+|.++++.+=....-.+. ..+.... +.+|
T Consensus       268 l~ald~~tG~~---~W~~--~~~~~~~~~~--~~~-~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~-~g~l  338 (394)
T PRK11138        268 LVALDLRSGQI---VWKR--EYGSVNDFAV--DGG-RIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLY-NGYL  338 (394)
T ss_pred             EEEEECCCCCE---EEee--cCCCccCcEE--ECC-EEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEE-CCEE
Confidence            99999875321   1111  1111112222  222 3667788999999999887643211100011 1111111 4455


Q ss_pred             EEccCCceEEEee
Q 036314          330 ISGGVDSKLCVSS  342 (347)
Q Consensus       330 ~s~s~D~~v~vw~  342 (347)
                      ..++.||.|.+.+
T Consensus       339 ~v~~~~G~l~~ld  351 (394)
T PRK11138        339 VVGDSEGYLHWIN  351 (394)
T ss_pred             EEEeCCCEEEEEE
Confidence            5666677666544

>smart00320 WD40 WD40 repeats

Probab=97.31  E-value=0.00056  Score=38.53  Aligned_cols=37  Identities=16%  Similarity=0.171  Sum_probs=31.0

Q ss_pred             ccceeecCCCCeEEEEeecC-CCEEEEccCCceEEEee
Q 036314          306 WPLSVIDSHKDKVLCADWWR-GDSVISGGVDSKLCVSS  342 (347)
Q Consensus       306 ~~~~~~~~h~~~v~~~~~~~-~~~l~s~s~D~~v~vw~  342 (347)
                      +++..+..|.+.|.++.|.+ +..+++++.|+.+++|+
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            34566778889999999975 67899999999999995

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=97.26  E-value=0.092  Score=48.41  Aligned_cols=91  Identities=15%  Similarity=0.149  Sum_probs=53.0

Q ss_pred             CcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeC--CCcEEEEEcCC-C---ccceeecCCCCeEEEEe
Q 036314          249 PILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASY--DGKVMLWDLRT-A---WPLSVIDSHKDKVLCAD  322 (347)
Q Consensus       249 ~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~--D~~i~lwd~~~-~---~~~~~~~~h~~~v~~~~  322 (347)
                      ..+.|+.++...  .++..+ .-...|-..+|-|.|..+.+-.+.  -.++.+|.+++ +   ..+..+..  -....+-
T Consensus       425 ~n~eIfrireKd--Ipve~v-elke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk--~~~N~vf  499 (698)
T KOG2314|consen  425 SNLEIFRIREKD--IPVEVV-ELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK--KFANTVF  499 (698)
T ss_pred             eeEEEEEeeccC--CCceee-ecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc--cccceEE
Confidence            456677776533  233333 234568889999998764332222  25788898874 2   22333332  3456688


Q ss_pred             ecC-CCEEEEc---cCCceEEEeecc
Q 036314          323 WWR-GDSVISG---GVDSKLCVSSGV  344 (347)
Q Consensus       323 ~~~-~~~l~s~---s~D~~v~vw~~~  344 (347)
                      |+| |+.++.+   |..|.+.+++.-
T Consensus       500 wsPkG~fvvva~l~s~~g~l~F~D~~  525 (698)
T KOG2314|consen  500 WSPKGRFVVVAALVSRRGDLEFYDTD  525 (698)
T ss_pred             EcCCCcEEEEEEecccccceEEEecc
Confidence            887 6665544   346777777653

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.25  E-value=0.036  Score=52.39  Aligned_cols=122  Identities=15%  Similarity=0.231  Sum_probs=81.6

Q ss_pred             CCCcCCce--eeccCCCCCEEEEEecCCeEEEEcCCCeEEEEee--ccCCceEEEEEeecCCCceEEEEEccCCCcEEEE
Q 036314           20 PSLHDDWV--SAVDGSNPGFILTGCYDNLGRVWKAGGVCTHILE--GHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLW   95 (347)
Q Consensus        20 ~~~h~~~v--~~~~~~~~~~l~sg~~d~~i~iw~~~~~~~~~l~--~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~w   95 (347)
                      +..|..-|  ++++ +.+.+|+-|+.-|.+++++..+.....++  +-.+.+....+++..    .++|.|+..|.|-++
T Consensus        29 ~~~~~~~v~lTc~d-st~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e----~lvAagt~~g~V~v~  103 (726)
T KOG3621|consen   29 PGFFPARVKLTCVD-ATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVE----YLVAAGTASGRVSVF  103 (726)
T ss_pred             cccCcceEEEEEee-cCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchh----HhhhhhcCCceEEee
Confidence            33344433  4444 35679999999999999997554333333  344444455555533    368889999999999


Q ss_pred             eccccccccCccccceeeee-eccccceEEEEEeCCCCEEEEeeCCCcEEEEecCC
Q 036314           96 KFDAEELVNHPKKIRSFKIL-RGHKASVHSIAAETSGNMVCSGSWDCTISLWRTND  150 (347)
Q Consensus        96 d~~~~~~~~~~~~~~~~~~~-~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~  150 (347)
                      -++....    ........+ ..|...|+++.|++++..+++|..-|+|..-.+..
T Consensus       104 ql~~~~p----~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  104 QLNKELP----RDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             hhhccCC----CcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence            8876321    111111111 23788999999999999999999999998876654

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=97.21  E-value=0.14  Score=51.61  Aligned_cols=243  Identities=13%  Similarity=0.116  Sum_probs=125.2

Q ss_pred             CceeeccCC-CCCEEEEEecCCeEEEEcCCCeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEec----cc
Q 036314           25 DWVSAVDGS-NPGFILTGCYDNLGRVWKAGGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKF----DA   99 (347)
Q Consensus        25 ~~v~~~~~~-~~~~l~sg~~d~~i~iw~~~~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~----~~   99 (347)
                      +.|.++.|- ++..++.+..+|.|.+=|+..........-.+.|.++.|+|+.    ..++-.+.++++-+=+.    -.
T Consensus        69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~De----e~l~liT~~~tll~mT~~f~~i~  144 (1265)
T KOG1920|consen   69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDE----ELLALITGRQTLLFMTKDFEPIA  144 (1265)
T ss_pred             cceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCC----cEEEEEeCCcEEEEEeccccchh
Confidence            678888876 5566666667787777776544433444445679999999954    35666666666654332    11


Q ss_pred             cccccC--ccc--------cceeeeeecc---------------------ccceEEEEEeCCCCEEEEe-----eCCCcE
Q 036314          100 EELVNH--PKK--------IRSFKILRGH---------------------KASVHSIAAETSGNMVCSG-----SWDCTI  143 (347)
Q Consensus       100 ~~~~~~--~~~--------~~~~~~~~~h---------------------~~~V~~v~~s~~~~~l~sg-----s~Dg~I  143 (347)
                      .+.+..  ...        .+.-..|+|.                     .+.=++|.|-.||++++..     ..-..|
T Consensus       145 E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rki  224 (1265)
T KOG1920|consen  145 EKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKI  224 (1265)
T ss_pred             ccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeE
Confidence            111100  000        0000011111                     1112458899999999872     333899


Q ss_pred             EEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEe-CCCCeEEEE---ecCCcEEEEECCCCce
Q 036314          144 SLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW-PQQETIYSA---SWDHSVRTWDVEMGKD  219 (347)
Q Consensus       144 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~l~s~---s~dg~v~vwd~~~~~~  219 (347)
                      ++||.+ +.....                   ...      ...--.+++| |.|..+++.   ..|+.|.++.- .|-.
T Consensus       225 rV~drE-g~Lns~-------------------se~------~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffEr-NGL~  277 (1265)
T KOG1920|consen  225 RVYDRE-GALNST-------------------SEP------VEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFER-NGLR  277 (1265)
T ss_pred             EEeccc-chhhcc-------------------cCc------ccccccceeecCCCCeEeeeeecCCCCcEEEEec-CCcc
Confidence            999866 211000                   000      0011134667 556566554   44557888873 3322


Q ss_pred             eee----eeeCe-eeEEEEeeCCCCcEEEE---ecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEE
Q 036314          220 LSD----IFCGK-ALNCIDIGGEGSALIAA---GGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISA  291 (347)
Q Consensus       220 ~~~----~~~~~-~~~~~~~~~~~~~~la~---~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~  291 (347)
                      -..    +.... ++..+.|..++ .++|.   ......|++|-..+- .....+.+.-.....  +.|+|.....|..-
T Consensus       278 hg~f~l~~p~de~~ve~L~Wns~s-diLAv~~~~~e~~~v~lwt~~Ny-hWYLKq~l~~~~~~~--~~W~p~~~~~L~v~  353 (1265)
T KOG1920|consen  278 HGEFVLPFPLDEKEVEELAWNSNS-DILAVVTSNLENSLVQLWTTGNY-HWYLKQELQFSQKAL--LMWDPVTEKTLHVL  353 (1265)
T ss_pred             ccccccCCcccccchheeeecCCC-CceeeeecccccceEEEEEecCe-EEEEEEEEecccccc--ccccCCCceeEEEE
Confidence            221    11222 37778887654 45665   455566999986531 111111221111111  66777655545544


Q ss_pred             eCCCcEEEEEc
Q 036314          292 SYDGKVMLWDL  302 (347)
Q Consensus       292 s~D~~i~lwd~  302 (347)
                      ..+|...++|+
T Consensus       354 ~~sG~~~v~~~  364 (1265)
T KOG1920|consen  354 RESGQRLVRDF  364 (1265)
T ss_pred             ecCCcEEEEEE
Confidence            45666555554

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.16  E-value=0.045  Score=39.69  Aligned_cols=91  Identities=15%  Similarity=0.215  Sum_probs=59.9

Q ss_pred             CeEEEEecCCcEEEEECCCCceeeeeeeCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeE
Q 036314          198 ETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISA  277 (347)
Q Consensus       198 ~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~  277 (347)
                      ..|+.||.|..||+|+-.  ..+..+.....+..+.-...  ..|+.+..+|+|-+|+-..    + +-..+.-.. +.+
T Consensus        16 ~eLlvGs~D~~IRvf~~~--e~~~Ei~e~~~v~~L~~~~~--~~F~Y~l~NGTVGvY~~~~----R-lWRiKSK~~-~~~   85 (111)
T PF14783_consen   16 NELLVGSDDFEIRVFKGD--EIVAEITETDKVTSLCSLGG--GRFAYALANGTVGVYDRSQ----R-LWRIKSKNQ-VTS   85 (111)
T ss_pred             ceEEEecCCcEEEEEeCC--cEEEEEecccceEEEEEcCC--CEEEEEecCCEEEEEeCcc----e-eeeeccCCC-eEE
Confidence            579999999999999743  45566665666666654333  4688889999999998531    1 222222222 333


Q ss_pred             E---EeCCCCCeEEEEEeCCCcEE
Q 036314          278 C---KWHNKSWFHLISASYDGKVM  298 (347)
Q Consensus       278 v---~~s~~~~~~l~s~s~D~~i~  298 (347)
                      +   .++.+|...|++|-.+|.|-
T Consensus        86 ~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   86 MAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             EEEEcCCCCCceEEEEEecCCeEE
Confidence            3   34455666799999998875

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.14  E-value=0.054  Score=39.26  Aligned_cols=69  Identities=16%  Similarity=0.181  Sum_probs=47.8

Q ss_pred             eEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEE
Q 036314           67 VSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLW  146 (347)
Q Consensus        67 V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iw  146 (347)
                      |+++.++.-++.....|+.||+|..||+|+=+.           .+..+.. .+.|+++.-... ..++-+...|||.+|
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e-----------~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY   68 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE-----------IVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVY   68 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc-----------EEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEE
Confidence            677877654433335789999999999998432           2233333 456777765544 568889999999999


Q ss_pred             ec
Q 036314          147 RT  148 (347)
Q Consensus       147 d~  148 (347)
                      +-
T Consensus        69 ~~   70 (111)
T PF14783_consen   69 DR   70 (111)
T ss_pred             eC
Confidence            74

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.08  E-value=0.011  Score=55.71  Aligned_cols=134  Identities=19%  Similarity=0.260  Sum_probs=87.7

Q ss_pred             CCCCeEEEEecCCcEEEEECCCCceeeeeee--CeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEe----
Q 036314          195 PQQETIYSASWDHSVRTWDVEMGKDLSDIFC--GKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQF----  268 (347)
Q Consensus       195 ~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~----  268 (347)
                      ..+++++-|+.-|.+.+|+-..+... .+..  ...+.++..-.+...++|+|+..|.|.++-+... .+.+...+    
T Consensus        43 st~~~l~~GsS~G~lyl~~R~~~~~~-~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~-~p~~~~~~t~~d  120 (726)
T KOG3621|consen   43 ATEEYLAMGSSAGSVYLYNRHTGEMR-KLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKE-LPRDLDYVTPCD  120 (726)
T ss_pred             cCCceEEEecccceEEEEecCchhhh-cccccCccceEEEEEecchhHhhhhhcCCceEEeehhhcc-CCCcceeecccc
Confidence            36688999999999999986555432 2222  2333333333445568899999999999988653 22222222    


Q ss_pred             cCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCC----ccceeecCCCCeEEEEeecCCCEEEE
Q 036314          269 SSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTA----WPLSVIDSHKDKVLCADWWRGDSVIS  331 (347)
Q Consensus       269 ~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~----~~~~~~~~h~~~v~~~~~~~~~~l~s  331 (347)
                      ..|...|+++.|++++. .|.+|..-|+|.+-.++..    ...+.+....+.|.-+++..+..|++
T Consensus       121 ~~~~~rVTal~Ws~~~~-k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q~~LLVS  186 (726)
T KOG3621|consen  121 KSHKCRVTALEWSKNGM-KLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQSYLLVS  186 (726)
T ss_pred             ccCCceEEEEEeccccc-EEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecccceehHh
Confidence            23677899999999996 4999999999999888762    12233333445666666654444444

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=97.07  E-value=0.12  Score=47.05  Aligned_cols=247  Identities=14%  Similarity=0.153  Sum_probs=128.9

Q ss_pred             EEEcCCCeEEEE-eeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeeeeccccceEEEE
Q 036314           48 RVWKAGGVCTHI-LEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIA  126 (347)
Q Consensus        48 ~iw~~~~~~~~~-l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~  126 (347)
                      .+|+........ +..-.-++..+.++|.+    ..|++...- .|.+|+-....         .+..+. | ..|.-+.
T Consensus        15 ~f~~~~s~~~~~~~~~~~~p~~~~~~SP~G----~~l~~~~~~-~V~~~~g~~~~---------~l~~~~-~-~~V~~~~   78 (561)
T COG5354          15 VFWNSQSEVIHTRFESENWPVAYVSESPLG----TYLFSEHAA-GVECWGGPSKA---------KLVRFR-H-PDVKYLD   78 (561)
T ss_pred             EeecCccccccccccccCcchhheeecCcc----hheehhhcc-ceEEccccchh---------heeeee-c-CCceecc
Confidence            345544333222 33355678888999844    356654444 59999865432         112222 3 4588899


Q ss_pred             EeCCCCEEEEeeCCCc---------------EEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccc--e
Q 036314          127 AETSGNMVCSGSWDCT---------------ISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQC--V  189 (347)
Q Consensus       127 ~s~~~~~l~sgs~Dg~---------------I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~--v  189 (347)
                      |+|.+++|.+=+....               +.+||+.++..                         +..+.+....  .
T Consensus        79 fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~i-------------------------v~sf~~~~q~~~~  133 (561)
T COG5354          79 FSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMI-------------------------VFSFNGISQPYLG  133 (561)
T ss_pred             cCcccceeeeeccCCccChhhccCCccccCceeEEeccCcee-------------------------EeeccccCCcccc
Confidence            9999999998665444               77777765421                         1222221111  1


Q ss_pred             E-EEEeC-CCCeEEEEecCCcEEEEECCCCce-e---eeeeeCeeeEEEEeeCCC-CcEEEE-----ecCCCcEEEEeCC
Q 036314          190 S-SVVWP-QQETIYSASWDHSVRTWDVEMGKD-L---SDIFCGKALNCIDIGGEG-SALIAA-----GGSDPILRIWDPR  257 (347)
Q Consensus       190 ~-~~~~~-~~~~l~s~s~dg~v~vwd~~~~~~-~---~~~~~~~~~~~~~~~~~~-~~~la~-----~~~d~~i~iwd~~  257 (347)
                      + -+.|+ ++.+++=. -...+.++++ ++.. .   ..+. ...+....++|.+ ...||.     .+.+..+++|.+.
T Consensus       134 Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr-~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp  210 (561)
T COG5354         134 WPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIEEHPFKNLR-PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIP  210 (561)
T ss_pred             cceeeeeecchhhhhh-ccCeEEEEec-CCccccCchhhcc-ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEcc
Confidence            1 22343 33333322 2346889986 3221 1   1111 1234455555542 222222     3456777777765


Q ss_pred             CCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeC----------CCcEEEEEcCCCccceeecCCCCeEEEEeecC-C
Q 036314          258 KPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASY----------DGKVMLWDLRTAWPLSVIDSHKDKVLCADWWR-G  326 (347)
Q Consensus       258 ~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~----------D~~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~-~  326 (347)
                      ... .....++-.-  .-..+.|++.|.++|+-.-.          ...+.|++++.. .+.....-.++|..+.|.| +
T Consensus       211 ~~s-~l~tk~lfk~--~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~-~i~V~~~~~~pVhdf~W~p~S  286 (561)
T COG5354         211 KNS-VLVTKNLFKV--SGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITER-SIPVEKDLKDPVHDFTWEPLS  286 (561)
T ss_pred             CCC-eeeeeeeEee--cccEEEEecCCceEEEEEEEeeecccceeccceEEEEeeccc-ccceeccccccceeeeecccC
Confidence            321 1111222111  11357788888765442211          245778888743 3333335578999999975 4


Q ss_pred             CE--EEEccCCceEEEee
Q 036314          327 DS--VISGGVDSKLCVSS  342 (347)
Q Consensus       327 ~~--l~s~s~D~~v~vw~  342 (347)
                      ++  +++|-++.++.+.+
T Consensus       287 ~~F~vi~g~~pa~~s~~~  304 (561)
T COG5354         287 SRFAVISGYMPASVSVFD  304 (561)
T ss_pred             CceeEEecccccceeecc
Confidence            45  44555676666554

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=96.86  E-value=0.039  Score=54.19  Aligned_cols=133  Identities=20%  Similarity=0.213  Sum_probs=84.2

Q ss_pred             ecCCcEEEEECCCCceeeeeeeCeeeEEEEeeCCC------CcEEEEecCCCcEEEEeCCCCCCCCCe----EEecCCCC
Q 036314          204 SWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEG------SALIAAGGSDPILRIWDPRKPGTSAPV----FQFSSHNS  273 (347)
Q Consensus       204 s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~------~~~la~~~~d~~i~iwd~~~~~~~~~~----~~~~~h~~  273 (347)
                      ...+.|.-.|++.|+.+..+..+..+....+.|..      ......|-.++.+..||+|..+.. .+    ..+ ....
T Consensus       501 ~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k-~v~~~~k~Y-~~~~  578 (794)
T PF08553_consen  501 NNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNK-LVDSQSKQY-SSKN  578 (794)
T ss_pred             CCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCc-eeecccccc-ccCC
Confidence            44577888899999988888765433233333321      122345778999999999964321 11    111 1222


Q ss_pred             CeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccce-eecCCCCeEEEEeec-CCCEEEEccCCceEEEee
Q 036314          274 WISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLS-VIDSHKDKVLCADWW-RGDSVISGGVDSKLCVSS  342 (347)
Q Consensus       274 ~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~-~~~~h~~~v~~~~~~-~~~~l~s~s~D~~v~vw~  342 (347)
                      ...|++-..+|  +||.||.+|.|||||- .|..-+ .|.+-.++|..++-+ +|++|++ ..+.-|.|..
T Consensus       579 ~Fs~~aTt~~G--~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwila-Tc~tyLlLi~  645 (794)
T PF08553_consen  579 NFSCFATTEDG--YIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILA-TCKTYLLLID  645 (794)
T ss_pred             CceEEEecCCc--eEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEE-eecceEEEEE
Confidence            35677777776  5999999999999994 343333 345667899999986 7877443 2344455544

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=96.71  E-value=0.051  Score=53.40  Aligned_cols=98  Identities=16%  Similarity=0.198  Sum_probs=67.3

Q ss_pred             CeEEEEecCCcEEEEECCCCc-eeee-----eeeCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCC
Q 036314          198 ETIYSASWDHSVRTWDVEMGK-DLSD-----IFCGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSH  271 (347)
Q Consensus       198 ~~l~s~s~dg~v~vwd~~~~~-~~~~-----~~~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h  271 (347)
                      ...+.|-.++.+-.||.|... .+..     ........|++-...  -.||.|+.+|.||+||-- +  ......+.+-
T Consensus       543 e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~--G~iavgs~~G~IRLyd~~-g--~~AKT~lp~l  617 (794)
T PF08553_consen  543 EQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTED--GYIAVGSNKGDIRLYDRL-G--KRAKTALPGL  617 (794)
T ss_pred             CceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecCC--ceEEEEeCCCcEEeeccc-c--hhhhhcCCCC
Confidence            345566778889999998642 2111     112335677776543  368999999999999942 2  1234456677


Q ss_pred             CCCeeEEEeCCCCCeEEEEEeCCCcEEEEEc
Q 036314          272 NSWISACKWHNKSWFHLISASYDGKVMLWDL  302 (347)
Q Consensus       272 ~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~  302 (347)
                      .++|..|..+.||.+.||||-  .-+.|++.
T Consensus       618 G~pI~~iDvt~DGkwilaTc~--tyLlLi~t  646 (794)
T PF08553_consen  618 GDPIIGIDVTADGKWILATCK--TYLLLIDT  646 (794)
T ss_pred             CCCeeEEEecCCCcEEEEeec--ceEEEEEE
Confidence            899999999999998777765  36777774

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PRK02888 nitrous-oxide reductase; Validated

Probab=96.61  E-value=0.3  Score=46.56  Aligned_cols=105  Identities=14%  Similarity=0.122  Sum_probs=73.1

Q ss_pred             CCCeEEEEecCCcEEEEECCC-----CceeeeeeeCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCC-----CCC-
Q 036314          196 QQETIYSASWDHSVRTWDVEM-----GKDLSDIFCGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGT-----SAP-  264 (347)
Q Consensus       196 ~~~~l~s~s~dg~v~vwd~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~-----~~~-  264 (347)
                      ++++...  .+++|.+.|.++     ...+..+..++....++++|++..+++++..++++.+.|+.+...     ..+ 
T Consensus       287 dGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~  364 (635)
T PRK02888        287 AGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPR  364 (635)
T ss_pred             CCCEEEE--CCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCcc
Confidence            5555443  367899999988     455666777777888899998888888899999999999875321     000 


Q ss_pred             ---eEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCC
Q 036314          265 ---VFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRT  304 (347)
Q Consensus       265 ---~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~  304 (347)
                         ..+..-.... .-.+|.++|. ...|--.|..|-.|++.+
T Consensus       365 ~~vvaevevGlGP-LHTaFDg~G~-aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        365 DAVVAEPELGLGP-LHTAFDGRGN-AYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             ceEEEeeccCCCc-ceEEECCCCC-EEEeEeecceeEEEehHH
Confidence               1122111112 2367888874 577778899999999876

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.54  E-value=0.39  Score=40.32  Aligned_cols=62  Identities=13%  Similarity=0.029  Sum_probs=39.3

Q ss_pred             CCEEEEEecCCeEEEEcCC-CeEEEEeeccCCceEE-EEEeecCCCceEEEEEccCCCcEEEEeccccc
Q 036314           35 PGFILTGCYDNLGRVWKAG-GVCTHILEGHCGAVSS-VNIIKSDGLKYVTVATASKDQTLRLWKFDAEE  101 (347)
Q Consensus        35 ~~~l~sg~~d~~i~iw~~~-~~~~~~l~~h~~~V~~-v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~  101 (347)
                      +++++-|++.|.+++-+.. |.....+..- +.|.+ ....+++    ..+..++.|++...-|..+..
T Consensus        63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~-~~vk~~a~~d~~~----glIycgshd~~~yalD~~~~~  126 (354)
T KOG4649|consen   63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVIL-ETVKVRAQCDFDG----GLIYCGSHDGNFYALDPKTYG  126 (354)
T ss_pred             CCEEEEEEccCcEEEEEecchhheeeeeeh-hhhccceEEcCCC----ceEEEecCCCcEEEecccccc
Confidence            4578899999998888753 5333333322 11221 1223322    368999999999999976544

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.50  E-value=0.18  Score=46.72  Aligned_cols=148  Identities=11%  Similarity=0.125  Sum_probs=73.1

Q ss_pred             eeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEE
Q 036314          114 ILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVV  193 (347)
Q Consensus       114 ~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~  193 (347)
                      .+....-....+.++|+|++++. ..||...|+.......                           .   ..+.-..++
T Consensus        27 ~lg~~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~---------------------------k---~~G~g~~~v   75 (443)
T PF04053_consen   27 ELGSCEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRN---------------------------K---AFGSGLSFV   75 (443)
T ss_dssp             EEEE-SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTEE---------------------------E---EEEE-SEEE
T ss_pred             cCCCCCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCcc---------------------------c---ccCceeEEE
Confidence            34445566788999999998887 6678888886321100                           0   011123355


Q ss_pred             eCCCCeEEEEecCCcEEEEECCCCceeeeeeeCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCC
Q 036314          194 WPQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNS  273 (347)
Q Consensus       194 ~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~  273 (347)
                      |.....++.-...++|+++.--.......+..+..+..+  .+  +.++...+ ++.|.+||....   ..+..+..  .
T Consensus        76 w~~~n~yAv~~~~~~I~I~kn~~~~~~k~i~~~~~~~~I--f~--G~LL~~~~-~~~i~~yDw~~~---~~i~~i~v--~  145 (443)
T PF04053_consen   76 WSSRNRYAVLESSSTIKIYKNFKNEVVKSIKLPFSVEKI--FG--GNLLGVKS-SDFICFYDWETG---KLIRRIDV--S  145 (443)
T ss_dssp             E-TSSEEEEE-TTS-EEEEETTEE-TT-----SS-EEEE--E---SSSEEEEE-TTEEEEE-TTT-----EEEEESS---
T ss_pred             EecCccEEEEECCCeEEEEEcCccccceEEcCCcccceE--Ec--CcEEEEEC-CCCEEEEEhhHc---ceeeEEec--C
Confidence            655666777777888999632222222333333222222  22  34554444 448999998743   33555532  2


Q ss_pred             CeeEEEeCCCCCeEEEEEeCCCcEEEEEcCC
Q 036314          274 WISACKWHNKSWFHLISASYDGKVMLWDLRT  304 (347)
Q Consensus       274 ~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~  304 (347)
                      .|..+.|++++.. +|-.+.| .+.|++.+.
T Consensus       146 ~vk~V~Ws~~g~~-val~t~~-~i~il~~~~  174 (443)
T PF04053_consen  146 AVKYVIWSDDGEL-VALVTKD-SIYILKYNL  174 (443)
T ss_dssp             E-EEEEE-TTSSE-EEEE-S--SEEEEEE-H
T ss_pred             CCcEEEEECCCCE-EEEEeCC-eEEEEEecc
Confidence            4889999999864 5555544 677776543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PRK02888 nitrous-oxide reductase; Validated

Probab=96.47  E-value=0.87  Score=43.60  Aligned_cols=94  Identities=14%  Similarity=0.050  Sum_probs=60.2

Q ss_pred             CCcEEEEeCCCCC--CCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCcc------------ceeecC
Q 036314          248 DPILRIWDPRKPG--TSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWP------------LSVIDS  313 (347)
Q Consensus       248 d~~i~iwd~~~~~--~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~------------~~~~~~  313 (347)
                      ++.|.+.|.+...  .......+. -......++++||+.+.++++..+.+|-|.|+++.+.            ..+.+-
T Consensus       295 gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev  373 (635)
T PRK02888        295 GSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL  373 (635)
T ss_pred             CCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc
Confidence            4668888876410  011223332 3344567899999999888888999999999987543            122221


Q ss_pred             CCCeEEEEeec-CCCEEEEccCCceEEEeec
Q 036314          314 HKDKVLCADWW-RGDSVISGGVDSKLCVSSG  343 (347)
Q Consensus       314 h~~~v~~~~~~-~~~~l~s~s~D~~v~vw~~  343 (347)
                      -.++ +-.+|. +|+.+.|--.|..|..|..
T Consensus       374 GlGP-LHTaFDg~G~aytslf~dsqv~kwn~  403 (635)
T PRK02888        374 GLGP-LHTAFDGRGNAYTTLFLDSQIVKWNI  403 (635)
T ss_pred             CCCc-ceEEECCCCCEEEeEeecceeEEEeh
Confidence            1223 334674 4667778788999999974

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=96.24  E-value=0.016  Score=47.39  Aligned_cols=104  Identities=13%  Similarity=0.162  Sum_probs=64.4

Q ss_pred             CCEEEEEecCCeEEEEcCC--CeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCcccccee
Q 036314           35 PGFILTGCYDNLGRVWKAG--GVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSF  112 (347)
Q Consensus        35 ~~~l~sg~~d~~i~iw~~~--~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~  112 (347)
                      +..++.|+.||.|.+|+..  |.....+..-...|.++  .|... +.....+++.||.||.|++..++         .+
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~--Ip~~~-~~~~~c~~~~dg~ir~~n~~p~k---------~~  137 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLG--IPNGR-DSSLGCVGAQDGRIRACNIKPNK---------VL  137 (238)
T ss_pred             CceEEeecccceEEEecCCccchHHHhhhcccccceec--ccccc-ccceeEEeccCCceeeeccccCc---------ee
Confidence            3468889999999999864  22111111111222222  23222 33367889999999999986543         22


Q ss_pred             eeeeccc-cceEEEEEeCCCCEEEEe--eCCCcEEEEecCC
Q 036314          113 KILRGHK-ASVHSIAAETSGNMVCSG--SWDCTISLWRTND  150 (347)
Q Consensus       113 ~~~~~h~-~~V~~v~~s~~~~~l~sg--s~Dg~I~iwd~~~  150 (347)
                      .....|+ .++........+..++.+  |.|..++.|+++.
T Consensus       138 g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  138 GYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             eeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence            2334465 556666666667777777  8888888888764

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=96.14  E-value=0.037  Score=51.69  Aligned_cols=90  Identities=17%  Similarity=0.144  Sum_probs=65.0

Q ss_pred             eEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCee-EEEeCCCCCeEEEEEeCCCcEEEEEcCCCcc
Q 036314          229 LNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWIS-ACKWHNKSWFHLISASYDGKVMLWDLRTAWP  307 (347)
Q Consensus       229 ~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~-~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~  307 (347)
                      +.-+.+.| ...++|.+..+|.+-+..+.    ...+.+++-|...++ +++|.|||. +||.|=.||+|++.|+.++..
T Consensus        23 i~~~ewnP-~~dLiA~~t~~gelli~R~n----~qRlwtip~p~~~v~~sL~W~~DGk-llaVg~kdG~I~L~Dve~~~~   96 (665)
T KOG4640|consen   23 IKRIEWNP-KMDLIATRTEKGELLIHRLN----WQRLWTIPIPGENVTASLCWRPDGK-LLAVGFKDGTIRLHDVEKGGR   96 (665)
T ss_pred             eEEEEEcC-ccchhheeccCCcEEEEEec----cceeEeccCCCCccceeeeecCCCC-EEEEEecCCeEEEEEccCCCc
Confidence            34455644 34578888899988888664    233667765666666 999999984 799999999999999999877


Q ss_pred             ceee-cCCCCeEEEEeec
Q 036314          308 LSVI-DSHKDKVLCADWW  324 (347)
Q Consensus       308 ~~~~-~~h~~~v~~~~~~  324 (347)
                      +..+ .--..+|.++-|+
T Consensus        97 l~~~~~s~e~~is~~~w~  114 (665)
T KOG4640|consen   97 LVSFLFSVETDISKGIWD  114 (665)
T ss_pred             eeccccccccchheeecc
Confidence            6652 1124567777775

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=96.04  E-value=0.016  Score=47.35  Aligned_cols=142  Identities=14%  Similarity=0.021  Sum_probs=78.4

Q ss_pred             EEEEecCCcEEEEECCCCceeeeeeeCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEE
Q 036314          200 IYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACK  279 (347)
Q Consensus       200 l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~  279 (347)
                      +...+.|+.|+-++++.-+.-.  .....+.+....+....-++.|+.+|.|++|.....+....+.  ..-...|.+..
T Consensus        33 l~~~sa~~~v~~~~~~k~k~s~--rse~~~~e~~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~--~s~~e~i~~~I  108 (238)
T KOG2444|consen   33 LRATSADGLVRERKVRKHKESC--RSERFIDEGQRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRV--CSGEESIDLGI  108 (238)
T ss_pred             hccccCCcccccchhhhhhhhh--hhhhhhhcceeecccCceEEeecccceEEEecCCccchHHHhh--hcccccceecc
Confidence            4556788888888775432110  0000111111112223457889999999999875322211111  11122233322


Q ss_pred             eCCCCCeEEEEEeCCCcEEEEEcCCCccceeecCCC-CeEEEEee-cCCCEEEEc--cCCceEEEeeccc
Q 036314          280 WHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHK-DKVLCADW-WRGDSVISG--GVDSKLCVSSGVS  345 (347)
Q Consensus       280 ~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h~-~~v~~~~~-~~~~~l~s~--s~D~~v~vw~~~~  345 (347)
                      -.-+...+..+++.||.|+.|.+..++.+.....|. ..+....- ..+..++.+  |.|..++.|..-+
T Consensus       109 p~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  109 PNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             ccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence            222322368888999999999998877666655666 33332222 345566666  7788888887543

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=96.03  E-value=1.1  Score=43.14  Aligned_cols=226  Identities=12%  Similarity=0.113  Sum_probs=109.0

Q ss_pred             CCCEEEEEecCC------eEEEEcCC-CeEEE--EeeccCCceEEEEEeecCCCceEEEEEccCC------CcEEEEecc
Q 036314           34 NPGFILTGCYDN------LGRVWKAG-GVCTH--ILEGHCGAVSSVNIIKSDGLKYVTVATASKD------QTLRLWKFD   98 (347)
Q Consensus        34 ~~~~l~sg~~d~------~i~iw~~~-~~~~~--~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~D------g~v~~wd~~   98 (347)
                      .+.+++.||.++      .+..+|+. +....  .+. +.....++++..     +...++|+.|      .++..||..
T Consensus       284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~-~~r~~~~~~~~~-----~~lYv~GG~~~~~~~l~~ve~YD~~  357 (571)
T KOG4441|consen  284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMP-SPRCRVGVAVLN-----GKLYVVGGYDSGSDRLSSVERYDPR  357 (571)
T ss_pred             CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCC-cccccccEEEEC-----CEEEEEccccCCCcccceEEEecCC
Confidence            455788888884      57777764 32222  222 222233444443     1356788888      357777776


Q ss_pred             ccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcE-----EEEecCCCCCCCccceeeeccCCCcccccc
Q 036314           99 AEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTI-----SLWRTNDSDAAGNQVSIKKRKGNNQVEEPQ  173 (347)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I-----~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (347)
                      .++    +....++.+- .+.-.+..    -+|.+.+.||.||.-     -.||..+....                   
T Consensus       358 ~~~----W~~~a~M~~~-R~~~~v~~----l~g~iYavGG~dg~~~l~svE~YDp~~~~W~-------------------  409 (571)
T KOG4441|consen  358 TNQ----WTPVAPMNTK-RSDFGVAV----LDGKLYAVGGFDGEKSLNSVECYDPVTNKWT-------------------  409 (571)
T ss_pred             CCc----eeccCCccCc-cccceeEE----ECCEEEEEeccccccccccEEEecCCCCccc-------------------
Confidence            543    1111111111 11222222    257888899999663     34443322110                   


Q ss_pred             ccccccccccCCccceEEEEeCCCCeEEEEecCC------cEEEEECCCCceeee--eeeCeeeEEEEeeCCCCcEEEEe
Q 036314          174 LEGEAISTLVGHTQCVSSVVWPQQETIYSASWDH------SVRTWDVEMGKDLSD--IFCGKALNCIDIGGEGSALIAAG  245 (347)
Q Consensus       174 ~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~dg------~v~vwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~la~~  245 (347)
                          ....+.... .-.+++.-.+...+.|+.++      ++..||..++.....  +.....-..++.  -++.+.+.|
T Consensus       410 ----~va~m~~~r-~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~--~~~~iYvvG  482 (571)
T KOG4441|consen  410 ----PVAPMLTRR-SGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAV--LNGKIYVVG  482 (571)
T ss_pred             ----ccCCCCcce-eeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEE--ECCEEEEEC
Confidence                000000000 11112223556667777665      467888877654321  111111111222  345677888


Q ss_pred             cCCC-----cEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCC-----cEEEEEcCC
Q 036314          246 GSDP-----ILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDG-----KVMLWDLRT  304 (347)
Q Consensus       246 ~~d~-----~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~-----~i~lwd~~~  304 (347)
                      |.|+     +|..||++.. ....+..+....+.+..+.+.   ..+.+.|+.|+     +|..||..+
T Consensus       483 G~~~~~~~~~VE~ydp~~~-~W~~v~~m~~~rs~~g~~~~~---~~ly~vGG~~~~~~l~~ve~ydp~~  547 (571)
T KOG4441|consen  483 GFDGTSALSSVERYDPETN-QWTMVAPMTSPRSAVGVVVLG---GKLYAVGGFDGNNNLNTVECYDPET  547 (571)
T ss_pred             CccCCCccceEEEEcCCCC-ceeEcccCccccccccEEEEC---CEEEEEecccCccccceeEEcCCCC
Confidence            8775     3778888643 222222233333333334442   24567777775     355666554

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.88  E-value=0.18  Score=46.44  Aligned_cols=136  Identities=18%  Similarity=0.201  Sum_probs=83.2

Q ss_pred             EEEEecCCcEEEEECCCCceeeeeeeCeeeEEEEeeCCC-------CcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCC
Q 036314          200 IYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEG-------SALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHN  272 (347)
Q Consensus       200 l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~  272 (347)
                      |.++.....+.=-|++.|+.+..+..+..++.+++.|+.       ... ..|-.|+.|.-||+|-.+.- .+....+|.
T Consensus       349 l~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~T-lvGLs~n~vfriDpRv~~~~-kl~~~q~kq  426 (644)
T KOG2395|consen  349 LMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQT-LVGLSDNSVFRIDPRVQGKN-KLAVVQSKQ  426 (644)
T ss_pred             eeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhccccccc-EEeecCCceEEecccccCcc-eeeeeeccc
Confidence            445555566777899999988888766666666665432       112 34777899999999854321 111112221


Q ss_pred             ----CCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecCCCCeEEEEeec-CCCEEEEccCCceEEE
Q 036314          273 ----SWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKVLCADWW-RGDSVISGGVDSKLCV  340 (347)
Q Consensus       273 ----~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h~~~v~~~~~~-~~~~l~s~s~D~~v~v  340 (347)
                          .--.|.+-..+|  ++|.||.+|.|||||--....-..+-+-..+|.-++-+ +|++|+. ..+..+.|
T Consensus       427 y~~k~nFsc~aTT~sG--~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~-Tc~tyLlL  496 (644)
T KOG2395|consen  427 YSTKNNFSCFATTESG--YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILA-TCKTYLLL  496 (644)
T ss_pred             cccccccceeeecCCc--eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEE-ecccEEEE
Confidence                123455555555  59999999999999973222233455666788877774 6776332 33444443

>PHA02713 hypothetical protein; Provisional

Probab=95.74  E-value=2.1  Score=41.31  Aligned_cols=93  Identities=8%  Similarity=0.003  Sum_probs=48.5

Q ss_pred             cEEEEECCCCceee--eeeeCeeeEEEEeeCCCCcEEEEecCC------CcEEEEeCCCCCCCCCeEEecCCCCCeeEEE
Q 036314          208 SVRTWDVEMGKDLS--DIFCGKALNCIDIGGEGSALIAAGGSD------PILRIWDPRKPGTSAPVFQFSSHNSWISACK  279 (347)
Q Consensus       208 ~v~vwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~la~~~~d------~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~  279 (347)
                      ++..||.++.+...  .+.......+++.  -++.+.+.||.+      ..+..||+...+....+..+.........+.
T Consensus       433 ~ve~YDP~td~W~~v~~m~~~r~~~~~~~--~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~  510 (557)
T PHA02713        433 KVIRYDTVNNIWETLPNFWTGTIRPGVVS--HKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTIL  510 (557)
T ss_pred             eEEEECCCCCeEeecCCCCcccccCcEEE--ECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEE
Confidence            47778887765432  1111111111222  134566777654      3467899875112322333333333344444


Q ss_pred             eCCCCCeEEEEEeCCC--cEEEEEcCCC
Q 036314          280 WHNKSWFHLISASYDG--KVMLWDLRTA  305 (347)
Q Consensus       280 ~s~~~~~~l~s~s~D~--~i~lwd~~~~  305 (347)
                      +  ++ .+.+.|+.|+  ++..||+.+.
T Consensus       511 ~--~~-~iyv~Gg~~~~~~~e~yd~~~~  535 (557)
T PHA02713        511 H--DN-TIMMLHCYESYMLQDTFNVYTY  535 (557)
T ss_pred             E--CC-EEEEEeeecceeehhhcCcccc
Confidence            4  33 5678888888  7777887764

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.73  E-value=1.1  Score=38.23  Aligned_cols=71  Identities=10%  Similarity=0.141  Sum_probs=42.9

Q ss_pred             CCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecCCCCeEEEEeecCCCEEEEccCCceEEEeecc
Q 036314          271 HNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKVLCADWWRGDSVISGGVDSKLCVSSGV  344 (347)
Q Consensus       271 h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~D~~v~vw~~~  344 (347)
                      -.++|-+++.+.+.....+|.=.....-+||..+|..+..-.  --.+-.|+-..+. ++..|.+|.+++++++
T Consensus       278 ~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~--l~daaGva~~~~g-f~vssg~G~~~~~s~~  348 (366)
T COG3490         278 FANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAA--LPDAAGVAAAKGG-FAVSSGQGRIIFYSRA  348 (366)
T ss_pred             HHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEeccc--ccccccceeccCc-eEEecCCceEEecccc
Confidence            346788899987766544454466678899999987543211  1122223322333 4444678888887765

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=95.70  E-value=2.2  Score=41.26  Aligned_cols=137  Identities=18%  Similarity=0.175  Sum_probs=69.0

Q ss_pred             CCCeEEEEecCC-----cEEEEECCCCceeeeeeeCeeeEEEEeeCCCCcEEEEecCC------CcEEEEeCCCCCCCCC
Q 036314          196 QQETIYSASWDH-----SVRTWDVEMGKDLSDIFCGKALNCIDIGGEGSALIAAGGSD------PILRIWDPRKPGTSAP  264 (347)
Q Consensus       196 ~~~~l~s~s~dg-----~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~d------~~i~iwd~~~~~~~~~  264 (347)
                      ++...+.|+.||     ++-.||.++.+.-..-.............-++.+.++||.+      .++..||+... ....
T Consensus       380 ~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~-~W~~  458 (571)
T KOG4441|consen  380 DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETN-TWTL  458 (571)
T ss_pred             CCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCC-ceee
Confidence            566677888886     36678877654322111111112222222345677888754      45678887643 2222


Q ss_pred             eEEecCCCCCeeEEEeCCCCCeEEEEEeCCCc-----EEEEEcCCCcc--ceeecCCCCeEEEEeecCCCEEEEccCCce
Q 036314          265 VFQFSSHNSWISACKWHNKSWFHLISASYDGK-----VMLWDLRTAWP--LSVIDSHKDKVLCADWWRGDSVISGGVDSK  337 (347)
Q Consensus       265 ~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~-----i~lwd~~~~~~--~~~~~~h~~~v~~~~~~~~~~l~s~s~D~~  337 (347)
                      ...+.--........++  + .+.+.|+.|+.     |..+|.++.+-  +..+......+..+. ..+...|.|+.|+.
T Consensus       459 ~~~M~~~R~~~g~a~~~--~-~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~-~~~~ly~vGG~~~~  534 (571)
T KOG4441|consen  459 IAPMNTRRSGFGVAVLN--G-KIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVV-LGGKLYAVGGFDGN  534 (571)
T ss_pred             cCCcccccccceEEEEC--C-EEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEE-ECCEEEEEecccCc
Confidence            22222222222223332  2 46777777763     77788876532  222222233333333 35667788887765

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=95.65  E-value=0.064  Score=50.15  Aligned_cols=89  Identities=17%  Similarity=0.184  Sum_probs=64.9

Q ss_pred             cceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceE-EEEe-CCC
Q 036314          120 ASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVS-SVVW-PQQ  197 (347)
Q Consensus       120 ~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~-~~~~-~~~  197 (347)
                      ..+.-+.|+|.-.++|.+..+|.+-+.+++-.                          .+-++.-|...+. +++| |+|
T Consensus        21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n~q--------------------------Rlwtip~p~~~v~~sL~W~~DG   74 (665)
T KOG4640|consen   21 INIKRIEWNPKMDLIATRTEKGELLIHRLNWQ--------------------------RLWTIPIPGENVTASLCWRPDG   74 (665)
T ss_pred             cceEEEEEcCccchhheeccCCcEEEEEeccc--------------------------eeEeccCCCCccceeeeecCCC
Confidence            44667889999999999999999888876521                          1223343445555 8999 688


Q ss_pred             CeEEEEecCCcEEEEECCCCceeeee--eeCeeeEEEEe
Q 036314          198 ETIYSASWDHSVRTWDVEMGKDLSDI--FCGKALNCIDI  234 (347)
Q Consensus       198 ~~l~s~s~dg~v~vwd~~~~~~~~~~--~~~~~~~~~~~  234 (347)
                      +.|+.|-.||+|++.|++.+..+...  .....+.++-|
T Consensus        75 kllaVg~kdG~I~L~Dve~~~~l~~~~~s~e~~is~~~w  113 (665)
T KOG4640|consen   75 KLLAVGFKDGTIRLHDVEKGGRLVSFLFSVETDISKGIW  113 (665)
T ss_pred             CEEEEEecCCeEEEEEccCCCceeccccccccchheeec
Confidence            89999999999999999998777652  23344555555

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.50  E-value=0.052  Score=53.82  Aligned_cols=94  Identities=19%  Similarity=0.258  Sum_probs=66.9

Q ss_pred             EEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecCCCCeEEE
Q 036314          241 LIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKVLC  320 (347)
Q Consensus       241 ~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h~~~v~~  320 (347)
                      .++.|+..|.+-.+|.+..  ..+...-..-..+|.+++|+.+|. +++.|-.+|.|.+||+..+.+++.+..|..++.+
T Consensus       101 ~ivi~Ts~ghvl~~d~~~n--L~~~~~ne~v~~~Vtsvafn~dg~-~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~  177 (1206)
T KOG2079|consen  101 PIVIGTSHGHVLLSDMTGN--LGPLHQNERVQGPVTSVAFNQDGS-LLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG  177 (1206)
T ss_pred             eEEEEcCchhhhhhhhhcc--cchhhcCCccCCcceeeEecCCCc-eeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence            5677888888888887642  222222223345799999999985 5777889999999999998888888777766666


Q ss_pred             Eeec----CCCEEEEccCCce
Q 036314          321 ADWW----RGDSVISGGVDSK  337 (347)
Q Consensus       321 ~~~~----~~~~l~s~s~D~~  337 (347)
                      +-+.    .+..+.++..-|.
T Consensus       178 vi~v~~t~~nS~llt~D~~Gs  198 (1206)
T KOG2079|consen  178 VIFVGRTSQNSKLLTSDTGGS  198 (1206)
T ss_pred             EEEEEEeCCCcEEEEccCCCc
Confidence            5553    3335777776665

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=95.43  E-value=0.049  Score=32.91  Aligned_cols=31  Identities=16%  Similarity=0.278  Sum_probs=28.0

Q ss_pred             ccceEEEEEeCCCCEEEEeeCCCcEEEEecC
Q 036314          119 KASVHSIAAETSGNMVCSGSWDCTISLWRTN  149 (347)
Q Consensus       119 ~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~  149 (347)
                      ...|.+++|+|..+++|.++.||.|.++++.
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN   41 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence            3458899999999999999999999999873

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=95.34  E-value=0.065  Score=51.92  Aligned_cols=92  Identities=15%  Similarity=0.217  Sum_probs=67.8

Q ss_pred             CCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecCCCCeEEEEeec-C
Q 036314          247 SDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKVLCADWW-R  325 (347)
Q Consensus       247 ~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h~~~v~~~~~~-~  325 (347)
                      ..|.|.||--.  +.+..-.+++-|   +.++.|+|.. ..|+.|-.-|.+.+|...+.+.-..-..|+.++..+.|| +
T Consensus        39 r~GSVtIfadt--GEPqr~Vt~P~h---atSLCWHpe~-~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~  112 (1416)
T KOG3617|consen   39 RGGSVTIFADT--GEPQRDVTYPVH---ATSLCWHPEE-FVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHD  112 (1416)
T ss_pred             CCceEEEEecC--CCCCccccccee---hhhhccChHH-HHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCC
Confidence            35778888421  122222233333   4568999986 468888889999999988765544556799999999998 5


Q ss_pred             CCEEEEccCCceEEEeecc
Q 036314          326 GDSVISGGVDSKLCVSSGV  344 (347)
Q Consensus       326 ~~~l~s~s~D~~v~vw~~~  344 (347)
                      |+.|+|+..-|.|.+|+--
T Consensus       113 G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen  113 GTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             CCeEEEcCCCceeEEEEee
Confidence            8899999999999999865

>PHA02713 hypothetical protein; Provisional

Probab=95.34  E-value=1.7  Score=41.83  Aligned_cols=133  Identities=8%  Similarity=0.021  Sum_probs=63.4

Q ss_pred             CCCeEEEEecCC-----cEEEEECCCCceee--eeeeCee-eEEEEeeCCCCcEEEEecCC-------------------
Q 036314          196 QQETIYSASWDH-----SVRTWDVEMGKDLS--DIFCGKA-LNCIDIGGEGSALIAAGGSD-------------------  248 (347)
Q Consensus       196 ~~~~l~s~s~dg-----~v~vwd~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~la~~~~d-------------------  248 (347)
                      ++...+.||.++     ++..||..+.....  .+..... ...+.+   ++.+.+.||.+                   
T Consensus       351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~---~g~IYviGG~~~~~~~~~~~~~~~~~~~~~  427 (557)
T PHA02713        351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVL---DQYIYIIGGRTEHIDYTSVHHMNSIDMEED  427 (557)
T ss_pred             CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEE---CCEEEEEeCCCccccccccccccccccccc
Confidence            455556666654     47789988764432  1111111 111222   35567777754                   


Q ss_pred             ----CcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCC------CcEEEEEcCC-C--ccceeecCCC
Q 036314          249 ----PILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYD------GKVMLWDLRT-A--WPLSVIDSHK  315 (347)
Q Consensus       249 ----~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D------~~i~lwd~~~-~--~~~~~~~~h~  315 (347)
                          +.+..||+... ....+..+.........+.+  ++ .+.+.|+.+      ..+..||.++ .  ..+..+....
T Consensus       428 ~~~~~~ve~YDP~td-~W~~v~~m~~~r~~~~~~~~--~~-~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r  503 (557)
T PHA02713        428 THSSNKVIRYDTVNN-IWETLPNFWTGTIRPGVVSH--KD-DIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRL  503 (557)
T ss_pred             ccccceEEEECCCCC-eEeecCCCCcccccCcEEEE--CC-EEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccc
Confidence                24777887642 12111111111111122333  23 344555543      2467899886 2  2233332222


Q ss_pred             CeEEEEeecCCCEEEEccCCc
Q 036314          316 DKVLCADWWRGDSVISGGVDS  336 (347)
Q Consensus       316 ~~v~~~~~~~~~~l~s~s~D~  336 (347)
                      .. .+++-..|+..+.||.|+
T Consensus       504 ~~-~~~~~~~~~iyv~Gg~~~  523 (557)
T PHA02713        504 SA-LHTILHDNTIMMLHCYES  523 (557)
T ss_pred             cc-ceeEEECCEEEEEeeecc
Confidence            22 223333677888998887

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.29  E-value=0.073  Score=52.88  Aligned_cols=99  Identities=16%  Similarity=0.220  Sum_probs=67.8

Q ss_pred             CCEEEEEecCCeEEEEcCCCeEE--EEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCcccccee
Q 036314           35 PGFILTGCYDNLGRVWKAGGVCT--HILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSF  112 (347)
Q Consensus        35 ~~~l~sg~~d~~i~iw~~~~~~~--~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~  112 (347)
                      ...+|.|+..|.+...|..+..-  +.-..-+++|.+++|..+    +..++.|-.+|.|.+||+..++         .+
T Consensus        99 ~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~d----g~~l~~G~~~G~V~v~D~~~~k---------~l  165 (1206)
T KOG2079|consen   99 VVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQD----GSLLLAGLGDGHVTVWDMHRAK---------IL  165 (1206)
T ss_pred             eeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCC----CceeccccCCCcEEEEEccCCc---------ce
Confidence            45688888888888888766432  222234578999999873    3578999999999999998754         34


Q ss_pred             eeeeccccceEEEE---EeCCCCEEEEeeCCCcEEEEec
Q 036314          113 KILRGHKASVHSIA---AETSGNMVCSGSWDCTISLWRT  148 (347)
Q Consensus       113 ~~~~~h~~~V~~v~---~s~~~~~l~sgs~Dg~I~iwd~  148 (347)
                      +.+.-|..+...+-   +..++..++++..-|.  +|.+
T Consensus       166 ~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  166 KVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             eeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence            45555666655543   3444557777766665  5654

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=94.92  E-value=3.1  Score=38.50  Aligned_cols=84  Identities=12%  Similarity=0.101  Sum_probs=45.8

Q ss_pred             CeEEEEeeccCCceEEEEEeecCCCceEEEEEccCC-CcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCC
Q 036314           54 GVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKD-QTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGN  132 (347)
Q Consensus        54 ~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~D-g~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~  132 (347)
                      |...+.+..-...+..-.|+++.. ...++.-.... ..+.+++++.++.       ..+..+.++..   .-+|+|||+
T Consensus       182 g~~~~~l~~~~~~~~~p~ws~~~~-~~~y~~f~~~~~~~i~~~~l~~g~~-------~~i~~~~g~~~---~P~fspDG~  250 (425)
T COG0823         182 GYNQQKLTDSGSLILTPAWSPDGK-KLAYVSFELGGCPRIYYLDLNTGKR-------PVILNFNGNNG---APAFSPDGS  250 (425)
T ss_pred             CcceeEecccCcceeccccCcCCC-ceEEEEEecCCCceEEEEeccCCcc-------ceeeccCCccC---CccCCCCCC
Confidence            444444544445555666776443 22222111222 4588888876642       12222344433   347999997


Q ss_pred             EE-EEeeCCCcEEEEec
Q 036314          133 MV-CSGSWDCTISLWRT  148 (347)
Q Consensus       133 ~l-~sgs~Dg~I~iwd~  148 (347)
                      .| ++...|+...||-+
T Consensus       251 ~l~f~~~rdg~~~iy~~  267 (425)
T COG0823         251 KLAFSSSRDGSPDIYLM  267 (425)
T ss_pred             EEEEEECCCCCccEEEE
Confidence            55 57888888777744

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=94.90  E-value=3.1  Score=38.38  Aligned_cols=29  Identities=21%  Similarity=0.398  Sum_probs=26.0

Q ss_pred             cceEEEEeCCCCeEEEEecCCcEEEEECC
Q 036314          187 QCVSSVVWPQQETIYSASWDHSVRTWDVE  215 (347)
Q Consensus       187 ~~v~~~~~~~~~~l~s~s~dg~v~vwd~~  215 (347)
                      +.+.++.|.+.+.|+....||++++||+.
T Consensus        81 ~~iv~~~wt~~e~LvvV~~dG~v~vy~~~  109 (410)
T PF04841_consen   81 GRIVGMGWTDDEELVVVQSDGTVRVYDLF  109 (410)
T ss_pred             CCEEEEEECCCCeEEEEEcCCEEEEEeCC
Confidence            67888999888889999999999999986

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=94.87  E-value=2.6  Score=37.37  Aligned_cols=112  Identities=11%  Similarity=0.180  Sum_probs=65.3

Q ss_pred             ccceEEEEeCCCCeEEEEecCCcEEEEECCCCc-eeeeeeeCe--eeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCC
Q 036314          186 TQCVSSVVWPQQETIYSASWDHSVRTWDVEMGK-DLSDIFCGK--ALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTS  262 (347)
Q Consensus       186 ~~~v~~~~~~~~~~l~s~s~dg~v~vwd~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~  262 (347)
                      .++|.++..-. ++|+. +.++.|.+|++...+ ....-....  .+.++...  + .+++.|..-..+.++..+.....
T Consensus        88 ~g~V~ai~~~~-~~lv~-~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~-~~I~vgD~~~sv~~~~~~~~~~~  162 (321)
T PF03178_consen   88 KGPVTAICSFN-GRLVV-AVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--K-NYILVGDAMKSVSLLRYDEENNK  162 (321)
T ss_dssp             SS-EEEEEEET-TEEEE-EETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--T-TEEEEEESSSSEEEEEEETTTE-
T ss_pred             cCcceEhhhhC-CEEEE-eecCEEEEEEccCcccchhhheecceEEEEEEecc--c-cEEEEEEcccCEEEEEEEccCCE
Confidence            46788887333 34443 346889999998776 333333322  34444443  2 36777877777887743321111


Q ss_pred             CCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcC
Q 036314          263 APVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLR  303 (347)
Q Consensus       263 ~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~  303 (347)
                      .....-.....++.++.|-+++. .++.+..+|.+.++...
T Consensus       163 l~~va~d~~~~~v~~~~~l~d~~-~~i~~D~~gnl~~l~~~  202 (321)
T PF03178_consen  163 LILVARDYQPRWVTAAEFLVDED-TIIVGDKDGNLFVLRYN  202 (321)
T ss_dssp             EEEEEEESS-BEEEEEEEE-SSS-EEEEEETTSEEEEEEE-
T ss_pred             EEEEEecCCCccEEEEEEecCCc-EEEEEcCCCeEEEEEEC
Confidence            11112223455688888886664 68999999999999876

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=94.67  E-value=0.16  Score=30.74  Aligned_cols=32  Identities=22%  Similarity=0.323  Sum_probs=27.4

Q ss_pred             CCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCc
Q 036314          273 SWISACKWHNKSWFHLISASYDGKVMLWDLRTAW  306 (347)
Q Consensus       273 ~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~  306 (347)
                      ..|..+.|+|... +||.++.||.|.++.+ +++
T Consensus        12 ~~v~~~~w~P~md-LiA~~t~~g~v~v~Rl-~~q   43 (47)
T PF12894_consen   12 SRVSCMSWCPTMD-LIALGTEDGEVLVYRL-NWQ   43 (47)
T ss_pred             CcEEEEEECCCCC-EEEEEECCCeEEEEEC-CCc
Confidence            4588999999986 7999999999999998 444

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=94.41  E-value=2.5  Score=37.51  Aligned_cols=130  Identities=15%  Similarity=0.133  Sum_probs=76.6

Q ss_pred             CcEEEEECCCC----ceee---eeeeCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEE
Q 036314          207 HSVRTWDVEMG----KDLS---DIFCGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACK  279 (347)
Q Consensus       207 g~v~vwd~~~~----~~~~---~~~~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~  279 (347)
                      |.|.++++...    ..+.   ......++.++..-  ++.++++.  +++|.+|++.......+...+. ..-.+.++.
T Consensus        62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~--~~~lv~~~--g~~l~v~~l~~~~~l~~~~~~~-~~~~i~sl~  136 (321)
T PF03178_consen   62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF--NGRLVVAV--GNKLYVYDLDNSKTLLKKAFYD-SPFYITSLS  136 (321)
T ss_dssp             EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE--TTEEEEEE--TTEEEEEEEETTSSEEEEEEE--BSSSEEEEE
T ss_pred             cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh--CCEEEEee--cCEEEEEEccCcccchhhheec-ceEEEEEEe
Confidence            67777877663    1222   22234566666653  44444443  5899999987543122222222 223677777


Q ss_pred             eCCCCCeEEEEEeCCCcEEEEEcCC-Cccceee--cCCCCeEEEEeec-CCCEEEEccCCceEEEeecc
Q 036314          280 WHNKSWFHLISASYDGKVMLWDLRT-AWPLSVI--DSHKDKVLCADWW-RGDSVISGGVDSKLCVSSGV  344 (347)
Q Consensus       280 ~s~~~~~~l~s~s~D~~i~lwd~~~-~~~~~~~--~~h~~~v~~~~~~-~~~~l~s~s~D~~v~vw~~~  344 (347)
                      ...+   +++.|..-..+.++.++. +..+..+  ....-.++++.|- +++.++.+..+|+|.+.+-+
T Consensus       137 ~~~~---~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~  202 (321)
T PF03178_consen  137 VFKN---YILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN  202 (321)
T ss_dssp             EETT---EEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred             cccc---EEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence            6533   588888888888875543 2223322  2234567888885 66689999999999998765

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=94.31  E-value=0.24  Score=29.06  Aligned_cols=32  Identities=25%  Similarity=0.317  Sum_probs=25.7

Q ss_pred             CeeEEEeCCCCC--eEEEEEeCCCcEEEEEcCCC
Q 036314          274 WISACKWHNKSW--FHLISASYDGKVMLWDLRTA  305 (347)
Q Consensus       274 ~v~~v~~s~~~~--~~l~s~s~D~~i~lwd~~~~  305 (347)
                      .|.+++|+|...  .+|+-+-.-+.|.|+|++++
T Consensus         2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence            578999998664  56777777799999999963

It contains a characteristic DLL sequence motif.

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=93.83  E-value=1.2  Score=41.16  Aligned_cols=121  Identities=13%  Similarity=0.150  Sum_probs=70.0

Q ss_pred             cEEEEECCCCceeeeeeeCeeeEEEEeeCCCCcEEEEecCCCcEEEE--eCCCCCCCCCeEEecCCCCCeeEEEeCCCCC
Q 036314          208 SVRTWDVEMGKDLSDIFCGKALNCIDIGGEGSALIAAGGSDPILRIW--DPRKPGTSAPVFQFSSHNSWISACKWHNKSW  285 (347)
Q Consensus       208 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~d~~i~iw--d~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~  285 (347)
                      .+.++|++++.....+........-.|+|++..++.+...|+...||  |+.....    ..+..-.+.-..=.|+|||.
T Consensus       219 ~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~----~~Lt~~~gi~~~Ps~spdG~  294 (425)
T COG0823         219 RIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNL----PRLTNGFGINTSPSWSPDGS  294 (425)
T ss_pred             eEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCcc----eecccCCccccCccCCCCCC
Confidence            48888998887655544433344557778887777777777765555  6554321    12222222222456899999


Q ss_pred             eEEEEEeCCCcEEEE--EcCCCccceeecCCCCeEEEEeecC-CCEEEEcc
Q 036314          286 FHLISASYDGKVMLW--DLRTAWPLSVIDSHKDKVLCADWWR-GDSVISGG  333 (347)
Q Consensus       286 ~~l~s~s~D~~i~lw--d~~~~~~~~~~~~h~~~v~~~~~~~-~~~l~s~s  333 (347)
                      +.+.+.+..|.=.||  |++.... ..+.-..+.-..-.|+| |++|+-.+
T Consensus       295 ~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~~SpdG~~i~~~~  344 (425)
T COG0823         295 KIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPVWSPDGDKIVFES  344 (425)
T ss_pred             EEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCcCccCCCCCCEEEEEe
Confidence            877777777765555  5554433 33332222222556764 77766555

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=93.54  E-value=4.4  Score=34.87  Aligned_cols=132  Identities=13%  Similarity=0.111  Sum_probs=71.3

Q ss_pred             CCCeEEEEecCCcEEEEECCCCceeeeeeeCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeE---------
Q 036314          196 QQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVF---------  266 (347)
Q Consensus       196 ~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~---------  266 (347)
                      .++.|+.|..+| +.++++........+.....+..+..-+.-..+++-  .|+.++++++..........         
T Consensus         6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~~I~ql~vl~~~~~llvL--sd~~l~~~~L~~l~~~~~~~~~~~~~~~~   82 (275)
T PF00780_consen    6 WGDRLLVGTEDG-LYVYDLSDPSKPTRILKLSSITQLSVLPELNLLLVL--SDGQLYVYDLDSLEPVSTSAPLAFPKSRS   82 (275)
T ss_pred             CCCEEEEEECCC-EEEEEecCCccceeEeecceEEEEEEecccCEEEEE--cCCccEEEEchhhcccccccccccccccc
Confidence            467888888888 889988443333333333346666665554444444  35999999986432211000         


Q ss_pred             --EecCCCCCeeEEE--eCCCCCeEEEEEeCCCcEEEEEcCCC-----ccceeecCCCCeEEEEeecCCCEEEEcc
Q 036314          267 --QFSSHNSWISACK--WHNKSWFHLISASYDGKVMLWDLRTA-----WPLSVIDSHKDKVLCADWWRGDSVISGG  333 (347)
Q Consensus       267 --~~~~h~~~v~~v~--~s~~~~~~l~s~s~D~~i~lwd~~~~-----~~~~~~~~h~~~v~~~~~~~~~~l~s~s  333 (347)
                        ..-.....+..++  -...+...|+. ....+|.+|.+...     ...+.+.- .+.+.++.|. ++.|+-|.
T Consensus        83 ~~~~~~~~~~v~~f~~~~~~~~~~~L~v-a~kk~i~i~~~~~~~~~f~~~~ke~~l-p~~~~~i~~~-~~~i~v~~  155 (275)
T PF00780_consen   83 LPTKLPETKGVSFFAVNGGHEGSRRLCV-AVKKKILIYEWNDPRNSFSKLLKEISL-PDPPSSIAFL-GNKICVGT  155 (275)
T ss_pred             ccccccccCCeeEEeeccccccceEEEE-EECCEEEEEEEECCcccccceeEEEEc-CCCcEEEEEe-CCEEEEEe
Confidence              0011222344444  12333344444 44459999988763     23344432 4677888887 33444443

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=93.52  E-value=5.9  Score=36.30  Aligned_cols=77  Identities=17%  Similarity=0.198  Sum_probs=53.2

Q ss_pred             CcCCceeeccCCCCCEEEEEecCCeEEEEcCCCeEEE---Eeec------cCCceEEEEEee----cCCCceEEEEEccC
Q 036314           22 LHDDWVSAVDGSNPGFILTGCYDNLGRVWKAGGVCTH---ILEG------HCGAVSSVNIIK----SDGLKYVTVATASK   88 (347)
Q Consensus        22 ~h~~~v~~~~~~~~~~l~sg~~d~~i~iw~~~~~~~~---~l~~------h~~~V~~v~~~~----~~~~~~~~l~s~s~   88 (347)
                      ...+.|++++.|+=+++|.|..+|.+.|-|.+|..+-   .+..      ....|+++.|.-    +++...-.|+.|.+
T Consensus        84 ~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn  163 (395)
T PF08596_consen   84 AKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTN  163 (395)
T ss_dssp             --S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEET
T ss_pred             ccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeC
Confidence            3479999999998899999999999999999875432   2222      223477777752    23333457888999


Q ss_pred             CCcEEEEecc
Q 036314           89 DQTLRLWKFD   98 (347)
Q Consensus        89 Dg~v~~wd~~   98 (347)
                      .|++.+|.+.
T Consensus       164 ~G~v~~fkIl  173 (395)
T PF08596_consen  164 SGNVLTFKIL  173 (395)
T ss_dssp             TSEEEEEEEE
T ss_pred             CCCEEEEEEe
Confidence            9999999874

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=93.49  E-value=4.5  Score=34.82  Aligned_cols=238  Identities=16%  Similarity=0.141  Sum_probs=117.8

Q ss_pred             CCCEEEEEecCCeEEEEcCC-C-eEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCcccc-c
Q 036314           34 NPGFILTGCYDNLGRVWKAG-G-VCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKI-R  110 (347)
Q Consensus        34 ~~~~l~sg~~d~~i~iw~~~-~-~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~-~  110 (347)
                      .++.|+.|..+| +.+++.. . ...+..  +...|..+.+.++-+    .|+. =.|+++.++++..-......... .
T Consensus         6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~----~llv-Lsd~~l~~~~L~~l~~~~~~~~~~~   77 (275)
T PF00780_consen    6 WGDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELN----LLLV-LSDGQLYVYDLDSLEPVSTSAPLAF   77 (275)
T ss_pred             CCCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccC----EEEE-EcCCccEEEEchhhccccccccccc
Confidence            467888899999 7888762 2 222222  222388898887543    2222 23599999998754322110000 0


Q ss_pred             e----eeeeeccccceEEEE--EeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccC
Q 036314          111 S----FKILRGHKASVHSIA--AETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVG  184 (347)
Q Consensus       111 ~----~~~~~~h~~~V~~v~--~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (347)
                      .    ...-......+...+  -...+...+......+|.+|..........                    ...+.+.-
T Consensus        78 ~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~--------------------~~~ke~~l  137 (275)
T PF00780_consen   78 PKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFS--------------------KLLKEISL  137 (275)
T ss_pred             cccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCccccc--------------------ceeEEEEc
Confidence            0    000111233444444  123344444455555899887654211000                    01112211


Q ss_pred             CccceEEEEeCCCCeEEEEecCCcEEEEECCCCceeeeee--e-----------CeeeEEEEeeCCCCcEEEEecCCCcE
Q 036314          185 HTQCVSSVVWPQQETIYSASWDHSVRTWDVEMGKDLSDIF--C-----------GKALNCIDIGGEGSALIAAGGSDPIL  251 (347)
Q Consensus       185 h~~~v~~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~--~-----------~~~~~~~~~~~~~~~~la~~~~d~~i  251 (347)
                       .+.+..+.|. ++.++.+. .+...+.|+.++....-..  .           ..++..+.+ ++ +.++++  .|..-
T Consensus       138 -p~~~~~i~~~-~~~i~v~~-~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~e~Ll~--~~~~g  210 (275)
T PF00780_consen  138 -PDPPSSIAFL-GNKICVGT-SKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SD-NEFLLC--YDNIG  210 (275)
T ss_pred             -CCCcEEEEEe-CCEEEEEe-CCceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CC-ceEEEE--ecceE
Confidence             1445667765 44555554 4458888888654322111  0           112333333 22 334443  24444


Q ss_pred             EEEeCCCCCCCC-CeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecCC
Q 036314          252 RIWDPRKPGTSA-PVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSH  314 (347)
Q Consensus       252 ~iwd~~~~~~~~-~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h  314 (347)
                      .+.|... ...+ ....+..   ...++++..  ++ |+..+. +.|.||++.+++.++++...
T Consensus       211 ~fv~~~G-~~~r~~~i~W~~---~p~~~~~~~--py-li~~~~-~~iEV~~~~~~~lvQ~i~~~  266 (275)
T PF00780_consen  211 VFVNKNG-EPSRKSTIQWSS---APQSVAYSS--PY-LIAFSS-NSIEVRSLETGELVQTIPLP  266 (275)
T ss_pred             EEEcCCC-CcCcccEEEcCC---chhEEEEEC--CE-EEEECC-CEEEEEECcCCcEEEEEECC
Confidence            4455432 2211 2334432   344556543  34 555555 45999999999888887654

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=92.95  E-value=10  Score=37.32  Aligned_cols=114  Identities=13%  Similarity=0.126  Sum_probs=70.0

Q ss_pred             eEEEEe---CCCCeEEEEecCCcEEEEECCCC-----------c---------eeeeeeeCeeeEEEEee-CCCCcEEEE
Q 036314          189 VSSVVW---PQQETIYSASWDHSVRTWDVEMG-----------K---------DLSDIFCGKALNCIDIG-GEGSALIAA  244 (347)
Q Consensus       189 v~~~~~---~~~~~l~s~s~dg~v~vwd~~~~-----------~---------~~~~~~~~~~~~~~~~~-~~~~~~la~  244 (347)
                      |+-+..   -..+.|+.+..||.|.+|.+++-           .         +...+..+...+.++++ ....++||+
T Consensus       103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAV  182 (717)
T PF08728_consen  103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAV  182 (717)
T ss_pred             eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEE
Confidence            554443   34567889999999999965210           0         01112223456677775 234568888


Q ss_pred             ecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCC--C---eEEEEEeCCCcEEEEEc
Q 036314          245 GGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKS--W---FHLISASYDGKVMLWDL  302 (347)
Q Consensus       245 ~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~--~---~~l~s~s~D~~i~lwd~  302 (347)
                      ++....|.||-............-..|..-|.+|.|-++.  .   ..|++++-.|.+.+|++
T Consensus       183 SsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  183 SSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             ecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            8888889988543211100010001245568889987664  1   26888999999999888

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=92.51  E-value=8.5  Score=35.35  Aligned_cols=105  Identities=16%  Similarity=0.180  Sum_probs=49.9

Q ss_pred             EecCCcEEEEECCCCceeeeeeeCe---eeEEEEee--CCCCcEEEEecCCCcEEEEeCCCCCCCC--CeEEecC-----
Q 036314          203 ASWDHSVRTWDVEMGKDLSDIFCGK---ALNCIDIG--GEGSALIAAGGSDPILRIWDPRKPGTSA--PVFQFSS-----  270 (347)
Q Consensus       203 ~s~dg~v~vwd~~~~~~~~~~~~~~---~~~~~~~~--~~~~~~la~~~~d~~i~iwd~~~~~~~~--~~~~~~~-----  270 (347)
                      +...+++.+||+...+.+..+..+.   ..-.+-|.  |....-++.+...++|-.|-....+...  .+.++..     
T Consensus       218 ~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~  297 (461)
T PF05694_consen  218 GKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEG  297 (461)
T ss_dssp             H-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--S
T ss_pred             ccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCc
Confidence            3456789999999988877776442   22233332  2222223333344445444221111111  1111111     


Q ss_pred             ------------CCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCcc
Q 036314          271 ------------HNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWP  307 (347)
Q Consensus       271 ------------h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~  307 (347)
                                  -..-|+++..|.|++++-+++-.+|.||.||+.....
T Consensus       298 ~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~  346 (461)
T PF05694_consen  298 WILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFN  346 (461)
T ss_dssp             S---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS
T ss_pred             ccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCC
Confidence                        0234788999999988788888999999999987543

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=92.46  E-value=8.7  Score=35.39  Aligned_cols=110  Identities=20%  Similarity=0.284  Sum_probs=64.6

Q ss_pred             CCCCeEE-EEecCC----cEEEEECCCCceeeeeeeCeeeEEEEeeCCCCcEEEEecC----------CCcEEEEeCCCC
Q 036314          195 PQQETIY-SASWDH----SVRTWDVEMGKDLSDIFCGKALNCIDIGGEGSALIAAGGS----------DPILRIWDPRKP  259 (347)
Q Consensus       195 ~~~~~l~-s~s~dg----~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~----------d~~i~iwd~~~~  259 (347)
                      |++++++ +.+..|    +++++|+++++.+...........+.|.+++..++.+...          ...|+.|.+..+
T Consensus       133 pdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~  212 (414)
T PF02897_consen  133 PDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTP  212 (414)
T ss_dssp             TTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-
T ss_pred             CCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCC
Confidence            5777764 445555    4999999999766543322223347887766666665432          234778877543


Q ss_pred             CCCCCeEEecCCCC--CeeEEEeCCCCCeEEEEEeCCC---cEEEEEcCCC
Q 036314          260 GTSAPVFQFSSHNS--WISACKWHNKSWFHLISASYDG---KVMLWDLRTA  305 (347)
Q Consensus       260 ~~~~~~~~~~~h~~--~v~~v~~s~~~~~~l~s~s~D~---~i~lwd~~~~  305 (347)
                      . ......+.....  +...+..++++.++++......   .+.+.|+..+
T Consensus       213 ~-~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~  262 (414)
T PF02897_consen  213 Q-SEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG  262 (414)
T ss_dssp             G-GG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred             h-HhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence            2 111233433322  2667889999988776665444   4777888764

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=92.43  E-value=6.2  Score=33.58  Aligned_cols=195  Identities=12%  Similarity=0.136  Sum_probs=92.0

Q ss_pred             CCceeeccCC-CCC-EEEEEecCCeEEEEcCCCeEEEE--eeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccc
Q 036314           24 DDWVSAVDGS-NPG-FILTGCYDNLGRVWKAGGVCTHI--LEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDA   99 (347)
Q Consensus        24 ~~~v~~~~~~-~~~-~l~sg~~d~~i~iw~~~~~~~~~--l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~   99 (347)
                      .+.++.+.+. +++ +++.....+.|...+..|..++.  |.+. +..-.|++..+    +.++++.-.++++.++++..
T Consensus        21 ~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~l~g~-~D~EgI~y~g~----~~~vl~~Er~~~L~~~~~~~   95 (248)
T PF06977_consen   21 LDELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIPLDGF-GDYEGITYLGN----GRYVLSEERDQRLYIFTIDD   95 (248)
T ss_dssp             -S-EEEEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE-SS--SSEEEEEE-ST----TEEEEEETTTTEEEEEEE--
T ss_pred             cCCccccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEeCCCC-CCceeEEEECC----CEEEEEEcCCCcEEEEEEec
Confidence            3448889876 344 56666666777777777776654  4443 44677887652    23455544588999998854


Q ss_pred             cccccCccccceee--eeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCcccccccccc
Q 036314          100 EELVNHPKKIRSFK--ILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGE  177 (347)
Q Consensus       100 ~~~~~~~~~~~~~~--~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (347)
                      .+........+.+.  ....+...+-.++|++.++.|+.+-...-.+||.+..... ........             ..
T Consensus        96 ~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~-~~~~~~~~-------------~~  161 (248)
T PF06977_consen   96 DTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPG-GFDLFVSD-------------DQ  161 (248)
T ss_dssp             --TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT--SS--EEEE--------------H
T ss_pred             cccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccC-ccceeecc-------------cc
Confidence            32111111111111  1123556688999999988888777777777776643110 00000000             00


Q ss_pred             ccccccCCccceEEEEe-CC-CCeEEEEecCCcEEEEECCCCceeeeeeeC----------eeeEEEEeeCCC
Q 036314          178 AISTLVGHTQCVSSVVW-PQ-QETIYSASWDHSVRTWDVEMGKDLSDIFCG----------KALNCIDIGGEG  238 (347)
Q Consensus       178 ~~~~~~~h~~~v~~~~~-~~-~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~----------~~~~~~~~~~~~  238 (347)
                      .+.........+.++++ |. ++.++-....+.|..+| ..|+.+..+...          .....+++.+++
T Consensus       162 ~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G  233 (248)
T PF06977_consen  162 DLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDG  233 (248)
T ss_dssp             HHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT-
T ss_pred             ccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCC
Confidence            00001112233566666 33 44556666777788888 566655544321          135667776543

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=92.03  E-value=7.8  Score=33.87  Aligned_cols=61  Identities=11%  Similarity=0.143  Sum_probs=40.9

Q ss_pred             EeeccCCceEEEEEeecCCCceEEEEEc-----cCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCE
Q 036314           59 ILEGHCGAVSSVNIIKSDGLKYVTVATA-----SKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNM  133 (347)
Q Consensus        59 ~l~~h~~~V~~v~~~~~~~~~~~~l~s~-----s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~  133 (347)
                      .|.||      -.|++++.    .|++.     +..|.|-+||...+        .+.+..+..|.-.-+.+.+.|||+.
T Consensus        51 HFyGH------g~fs~dG~----~LytTEnd~~~g~G~IgVyd~~~~--------~~ri~E~~s~GIGPHel~l~pDG~t  112 (305)
T PF07433_consen   51 HFYGH------GVFSPDGR----LLYTTENDYETGRGVIGVYDAARG--------YRRIGEFPSHGIGPHELLLMPDGET  112 (305)
T ss_pred             EEecC------EEEcCCCC----EEEEeccccCCCcEEEEEEECcCC--------cEEEeEecCCCcChhhEEEcCCCCE
Confidence            45566      45777443    45554     34578999998722        2345567777777788999999977


Q ss_pred             EEEe
Q 036314          134 VCSG  137 (347)
Q Consensus       134 l~sg  137 (347)
                      |+.+
T Consensus       113 LvVA  116 (305)
T PF07433_consen  113 LVVA  116 (305)
T ss_pred             EEEE
Confidence            7654

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=91.87  E-value=7.3  Score=33.16  Aligned_cols=200  Identities=13%  Similarity=0.161  Sum_probs=102.2

Q ss_pred             EEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEe
Q 036314           58 HILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSG  137 (347)
Q Consensus        58 ~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sg  137 (347)
                      +.+.+-...++.|++.|+.+   ..++.....+.|-..+.+ ++++.      . -.+.+. +-.-.|++..++.++++.
T Consensus        15 ~~l~g~~~e~SGLTy~pd~~---tLfaV~d~~~~i~els~~-G~vlr------~-i~l~g~-~D~EgI~y~g~~~~vl~~   82 (248)
T PF06977_consen   15 KPLPGILDELSGLTYNPDTG---TLFAVQDEPGEIYELSLD-GKVLR------R-IPLDGF-GDYEGITYLGNGRYVLSE   82 (248)
T ss_dssp             EE-TT--S-EEEEEEETTTT---EEEEEETTTTEEEEEETT---EEE------E-EE-SS--SSEEEEEE-STTEEEEEE
T ss_pred             eECCCccCCccccEEcCCCC---eEEEEECCCCEEEEEcCC-CCEEE------E-EeCCCC-CCceeEEEECCCEEEEEE
Confidence            35666677799999998644   356677777777777754 33221      1 123443 335678888888888877


Q ss_pred             eCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEe-CCCCeEEEEecCCcEEEEECCC
Q 036314          138 SWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEM  216 (347)
Q Consensus       138 s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~l~s~s~dg~v~vwd~~~  216 (347)
                      -+++.+.++++......-......              .-.+.....++..+-.++| +.++.|+.+-...-.++|.+..
T Consensus        83 Er~~~L~~~~~~~~~~~~~~~~~~--------------~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~  148 (248)
T PF06977_consen   83 ERDQRLYIFTIDDDTTSLDRADVQ--------------KISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNG  148 (248)
T ss_dssp             TTTTEEEEEEE----TT--EEEEE--------------EEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEES
T ss_pred             cCCCcEEEEEEeccccccchhhce--------------EEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEcc
Confidence            679999999875421110000000              0001111234556788999 5567777777777777877654


Q ss_pred             ---Cceeeee-----e----eCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCC-------CCeeE
Q 036314          217 ---GKDLSDI-----F----CGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHN-------SWISA  277 (347)
Q Consensus       217 ---~~~~~~~-----~----~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~-------~~v~~  277 (347)
                         +..+...     .    .-..+..+.++|..+++++-...+..|..+|..  +.......+....       ..--.
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~--G~~~~~~~L~~g~~gl~~~~~QpEG  226 (248)
T PF06977_consen  149 FPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQ--GRVVSSLSLDRGFHGLSKDIPQPEG  226 (248)
T ss_dssp             TT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT----EEEEEE-STTGGG-SS---SEEE
T ss_pred             ccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEECCC--CCEEEEEEeCCcccCcccccCCccE
Confidence               2221111     0    112456788888888888888889999999954  2222233333211       12455


Q ss_pred             EEeCCCCC
Q 036314          278 CKWHNKSW  285 (347)
Q Consensus       278 v~~s~~~~  285 (347)
                      ++|.++|.
T Consensus       227 Ia~d~~G~  234 (248)
T PF06977_consen  227 IAFDPDGN  234 (248)
T ss_dssp             EEE-TT--
T ss_pred             EEECCCCC
Confidence            78888774

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PRK13616 lipoprotein LpqB; Provisional

Probab=91.81  E-value=7.1  Score=37.90  Aligned_cols=69  Identities=23%  Similarity=0.230  Sum_probs=40.6

Q ss_pred             CCCeeEEEeCCCCCeEEEEEeCCCcEEE---EEcCCCcc-c---eeec-CCCCeEEEEeecCCCEEEEccCCceEEEee
Q 036314          272 NSWISACKWHNKSWFHLISASYDGKVML---WDLRTAWP-L---SVID-SHKDKVLCADWWRGDSVISGGVDSKLCVSS  342 (347)
Q Consensus       272 ~~~v~~v~~s~~~~~~l~s~s~D~~i~l---wd~~~~~~-~---~~~~-~h~~~v~~~~~~~~~~l~s~s~D~~v~vw~  342 (347)
                      ...|.++.|||||.+.++..  ++.|.+   -....|+. +   ..+. +-.+.+..++|.++..|+.+..++.-.+|.
T Consensus       447 ~g~Issl~wSpDG~RiA~i~--~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~  523 (591)
T PRK13616        447 PGPISELQLSRDGVRAAMII--GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLVVGRSDPEHPVWY  523 (591)
T ss_pred             CCCcCeEEECCCCCEEEEEE--CCEEEEEEEEeCCCCceeecccEEeecccCCccccceEecCCEEEEEecCCCCceEE
Confidence            45699999999998644433  467777   34334431 1   1122 222346788998766666555555555565

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.74  E-value=2.5  Score=39.35  Aligned_cols=94  Identities=15%  Similarity=0.155  Sum_probs=60.5

Q ss_pred             EEecCCcEEEEECCCCce--eeeee-----eCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCC
Q 036314          202 SASWDHSVRTWDVEMGKD--LSDIF-----CGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSW  274 (347)
Q Consensus       202 s~s~dg~v~vwd~~~~~~--~~~~~-----~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~  274 (347)
                      .|-.|+.|--||.+-...  +.-.+     ......|.+-..+  -.|++|+.+|.||+||.-.  . .....+++-.+.
T Consensus       399 vGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT~s--G~IvvgS~~GdIRLYdri~--~-~AKTAlPgLG~~  473 (644)
T KOG2395|consen  399 VGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATTES--GYIVVGSLKGDIRLYDRIG--R-RAKTALPGLGDA  473 (644)
T ss_pred             EeecCCceEEecccccCcceeeeeeccccccccccceeeecCC--ceEEEeecCCcEEeehhhh--h-hhhhcccccCCc
Confidence            455677788899874221  11111     1234566665443  3688999999999999521  1 223467788888


Q ss_pred             eeEEEeCCCCCeEEEEEeCCCcEEEEEc
Q 036314          275 ISACKWHNKSWFHLISASYDGKVMLWDL  302 (347)
Q Consensus       275 v~~v~~s~~~~~~l~s~s~D~~i~lwd~  302 (347)
                      |.-|..+.+|.+.|+||  +..+.|.|.
T Consensus       474 I~hVdvtadGKwil~Tc--~tyLlLi~t  499 (644)
T KOG2395|consen  474 IKHVDVTADGKWILATC--KTYLLLIDT  499 (644)
T ss_pred             eeeEEeeccCcEEEEec--ccEEEEEEE
Confidence            98899999998755554  346667664

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=91.63  E-value=11  Score=34.55  Aligned_cols=160  Identities=15%  Similarity=0.142  Sum_probs=96.5

Q ss_pred             EEEEEeCCCC-EEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEe-CCCCeE
Q 036314          123 HSIAAETSGN-MVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW-PQQETI  200 (347)
Q Consensus       123 ~~v~~s~~~~-~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~l  200 (347)
                      ..+++++.+. ..+....+..|.+.|........                        ....+.  .-..+++ ++++.+
T Consensus        77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~------------------------~~~vG~--~P~~~~~~~~~~~v  130 (381)
T COG3391          77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLG------------------------SIPVGL--GPVGLAVDPDGKYV  130 (381)
T ss_pred             cceeeCCCCCeEEEecCCCCeEEEEcCcccceee------------------------Eeeecc--CCceEEECCCCCEE
Confidence            4567788887 44555556899999854321100                        000111  1233444 566666


Q ss_pred             EEEec---CCcEEEEECCCCceeeeeeeCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCC--CCeEEecCCCCCe
Q 036314          201 YSASW---DHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTS--APVFQFSSHNSWI  275 (347)
Q Consensus       201 ~s~s~---dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~--~~~~~~~~h~~~v  275 (347)
                      +.+..   ++++.+.|..+.+.+.....+.....+++.+.+....++-..++.|.++|.......  ....... -...-
T Consensus       131 YV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~-~~~~P  209 (381)
T COG3391         131 YVANAGNGNNTVSVIDAATNKVTATIPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVG-VGTGP  209 (381)
T ss_pred             EEEecccCCceEEEEeCCCCeEEEEEecCCCcceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccc-cCCCC
Confidence            55544   688999999888887776555434778887777767777778999999996532110  0000111 12223


Q ss_pred             eEEEeCCCCCeEEEEEeCC--CcEEEEEcCCCccce
Q 036314          276 SACKWHNKSWFHLISASYD--GKVMLWDLRTAWPLS  309 (347)
Q Consensus       276 ~~v~~s~~~~~~l~s~s~D--~~i~lwd~~~~~~~~  309 (347)
                      ..+.++|++.+..++-..+  +++...|..++....
T Consensus       210 ~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~  245 (381)
T COG3391         210 AGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTA  245 (381)
T ss_pred             ceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEE
Confidence            4578899987655544444  688888888765444

>PRK13616 lipoprotein LpqB; Provisional

Probab=90.83  E-value=17  Score=35.40  Aligned_cols=109  Identities=8%  Similarity=0.059  Sum_probs=54.2

Q ss_pred             CeeeEEEEeeCCCCcEEEEecCCCcEEE---EeCCCCC-CCCCeEEecC-CCCCeeEEEeCCCCCeEEEEEeCCCcEEEE
Q 036314          226 GKALNCIDIGGEGSALIAAGGSDPILRI---WDPRKPG-TSAPVFQFSS-HNSWISACKWHNKSWFHLISASYDGKVMLW  300 (347)
Q Consensus       226 ~~~~~~~~~~~~~~~~la~~~~d~~i~i---wd~~~~~-~~~~~~~~~~-h~~~v~~v~~s~~~~~~l~s~s~D~~i~lw  300 (347)
                      ...+..+.+++++.++++..  ++.|.+   -....+. .......+.. -...+.++.|.+++.  |+.+..++...+|
T Consensus       447 ~g~Issl~wSpDG~RiA~i~--~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~--L~V~~~~~~~~v~  522 (591)
T PRK13616        447 PGPISELQLSRDGVRAAMII--GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDS--LVVGRSDPEHPVW  522 (591)
T ss_pred             CCCcCeEEECCCCCEEEEEE--CCEEEEEEEEeCCCCceeecccEEeecccCCccccceEecCCE--EEEEecCCCCceE
Confidence            34578889987766554443  467776   3322111 0001112222 233357899998874  4455544444455


Q ss_pred             E--cCCCccceeecC--CCCeEEEEeecCCCEEEEccCCceEEE
Q 036314          301 D--LRTAWPLSVIDS--HKDKVLCADWWRGDSVISGGVDSKLCV  340 (347)
Q Consensus       301 d--~~~~~~~~~~~~--h~~~v~~~~~~~~~~l~s~s~D~~v~v  340 (347)
                      .  +.. .....+.+  ....+..++=+++..+++ ..++.+.+
T Consensus       523 ~v~vDG-~~~~~~~~~n~~~~v~~vaa~~~~iyv~-~~~g~~~l  564 (591)
T PRK13616        523 YVNLDG-SNSDALPSRNLSAPVVAVAASPSTVYVT-DARAVLQL  564 (591)
T ss_pred             EEecCC-ccccccCCCCccCceEEEecCCceEEEE-cCCceEEe
Confidence            4  442 22222222  245666666555544443 55555444

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=90.78  E-value=13  Score=33.99  Aligned_cols=200  Identities=15%  Similarity=0.136  Sum_probs=111.4

Q ss_pred             EEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeC---CCcEEE
Q 036314           69 SVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSW---DCTISL  145 (347)
Q Consensus        69 ~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~---Dg~I~i  145 (347)
                      .+++.+.+.   ...++...++.|.+.|....+...        ....+.  ....++++++++.++.+..   ++++.+
T Consensus        78 ~i~v~~~~~---~vyv~~~~~~~v~vid~~~~~~~~--------~~~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsv  144 (381)
T COG3391          78 GVAVNPAGN---KVYVTTGDSNTVSVIDTATNTVLG--------SIPVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSV  144 (381)
T ss_pred             ceeeCCCCC---eEEEecCCCCeEEEEcCcccceee--------Eeeecc--CCceEEECCCCCEEEEEecccCCceEEE
Confidence            455555433   245566667899999966543211        111222  3467899999977765544   677877


Q ss_pred             EecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEe-CCCCeEEEE-ecCCcEEEEECCCCceee--
Q 036314          146 WRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW-PQQETIYSA-SWDHSVRTWDVEMGKDLS--  221 (347)
Q Consensus       146 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~l~s~-s~dg~v~vwd~~~~~~~~--  221 (347)
                      .|..+.....                        ....+- .+ ..+++ |+++.++.+ ..++++.+.|........  
T Consensus       145 id~~t~~~~~------------------------~~~vG~-~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~  198 (381)
T COG3391         145 IDAATNKVTA------------------------TIPVGN-TP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGS  198 (381)
T ss_pred             EeCCCCeEEE------------------------EEecCC-Cc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccc
Confidence            7765432110                        001111 12 34454 677765544 478899999976654432  


Q ss_pred             ---eeeeCeeeEEEEeeCCCCcEEEEecCC--CcEEEEeCCCCCCCCCeEEe--cCCCCCeeEEEeCCCCCeEEEEEeCC
Q 036314          222 ---DIFCGKALNCIDIGGEGSALIAAGGSD--PILRIWDPRKPGTSAPVFQF--SSHNSWISACKWHNKSWFHLISASYD  294 (347)
Q Consensus       222 ---~~~~~~~~~~~~~~~~~~~~la~~~~d--~~i~iwd~~~~~~~~~~~~~--~~h~~~v~~v~~s~~~~~~l~s~s~D  294 (347)
                         ..........+.+.+++....++...+  +.+...|.....    ....  ......-..+..+|++...-+.-+..
T Consensus       199 ~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~----v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~  274 (381)
T COG3391         199 VGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGN----VTATDLPVGSGAPRGVAVDPAGKAAYVANSQG  274 (381)
T ss_pred             cccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCce----EEEeccccccCCCCceeECCCCCEEEEEecCC
Confidence               122223344566766666555554444  688888876421    1111  11111334578899987643333556


Q ss_pred             CcEEEEEcCCCccceee
Q 036314          295 GKVMLWDLRTAWPLSVI  311 (347)
Q Consensus       295 ~~i~lwd~~~~~~~~~~  311 (347)
                      +.+.+.|..+.......
T Consensus       275 ~~V~vid~~~~~v~~~~  291 (381)
T COG3391         275 GTVSVIDGATDRVVKTG  291 (381)
T ss_pred             CeEEEEeCCCCceeeee
Confidence            88999998876655543

>PHA03098 kelch-like protein; Provisional

Probab=90.76  E-value=16  Score=35.04  Aligned_cols=104  Identities=11%  Similarity=0.142  Sum_probs=46.6

Q ss_pred             CCCeEEEEecC------CcEEEEECCCCceeee--eeeCeeeEEEEeeCCCCcEEEEecCC--------CcEEEEeCCCC
Q 036314          196 QQETIYSASWD------HSVRTWDVEMGKDLSD--IFCGKALNCIDIGGEGSALIAAGGSD--------PILRIWDPRKP  259 (347)
Q Consensus       196 ~~~~l~s~s~d------g~v~vwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~la~~~~d--------~~i~iwd~~~~  259 (347)
                      ++..++.|+.+      +.+..||..+.+....  +.......+...  .++.+++.||.+        ..+..||+...
T Consensus       389 ~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~  466 (534)
T PHA03098        389 NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIY--HDGKIYVIGGISYIDNIKVYNIVESYNPVTN  466 (534)
T ss_pred             CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEE--ECCEEEEECCccCCCCCcccceEEEecCCCC
Confidence            44445555532      3577899877654321  111111111222  234566667643        23888887642


Q ss_pred             CCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCC-----CcEEEEEcCCC
Q 036314          260 GTSAPVFQFSSHNSWISACKWHNKSWFHLISASYD-----GKVMLWDLRTA  305 (347)
Q Consensus       260 ~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D-----~~i~lwd~~~~  305 (347)
                       ....+..+.........+.+  ++ .+++.|+.+     ..+.++|.++.
T Consensus       467 -~W~~~~~~~~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~v~~yd~~~~  513 (534)
T PHA03098        467 -KWTELSSLNFPRINASLCIF--NN-KIYVVGGDKYEYYINEIEVYDDKTN  513 (534)
T ss_pred             -ceeeCCCCCcccccceEEEE--CC-EEEEEcCCcCCcccceeEEEeCCCC
Confidence             11111111111111222333  33 345556543     46777877654

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=90.62  E-value=8  Score=34.11  Aligned_cols=94  Identities=10%  Similarity=0.201  Sum_probs=54.9

Q ss_pred             cCCCeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCC
Q 036314           51 KAGGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETS  130 (347)
Q Consensus        51 ~~~~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~  130 (347)
                      ++.+..++.+.+|-..-+.|+|+|++.   .+.++=+..+.|..|++...+... ... +....+..+.+..-.++...+
T Consensus       149 ~p~g~~~~l~~~~~~~~NGla~SpDg~---tly~aDT~~~~i~r~~~d~~~g~~-~~~-~~~~~~~~~~G~PDG~~vDad  223 (307)
T COG3386         149 DPDGGVVRLLDDDLTIPNGLAFSPDGK---TLYVADTPANRIHRYDLDPATGPI-GGR-RGFVDFDEEPGLPDGMAVDAD  223 (307)
T ss_pred             cCCCCEEEeecCcEEecCceEECCCCC---EEEEEeCCCCeEEEEecCcccCcc-CCc-ceEEEccCCCCCCCceEEeCC
Confidence            444566666777655567899999653   355666777888888876311110 011 112222223344445667778


Q ss_pred             CCEEEEeeCCC-cEEEEecC
Q 036314          131 GNMVCSGSWDC-TISLWRTN  149 (347)
Q Consensus       131 ~~~l~sgs~Dg-~I~iwd~~  149 (347)
                      |.+.+++-.+| .|.+|+..
T Consensus       224 G~lw~~a~~~g~~v~~~~pd  243 (307)
T COG3386         224 GNLWVAAVWGGGRVVRFNPD  243 (307)
T ss_pred             CCEEEecccCCceEEEECCC
Confidence            88776555554 78888654

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=90.46  E-value=6.5  Score=38.15  Aligned_cols=107  Identities=7%  Similarity=0.070  Sum_probs=64.5

Q ss_pred             EEEEEecC-CeEEEEcCCCeEE---EEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCcccccee
Q 036314           37 FILTGCYD-NLGRVWKAGGVCT---HILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSF  112 (347)
Q Consensus        37 ~l~sg~~d-~~i~iw~~~~~~~---~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~  112 (347)
                      .+|....+ .++.|||..+...   ..| ...+.|..++|..-.  ++..+++-+..+.|.++.-..-........+.++
T Consensus        42 k~a~V~~~~~~LtIWD~~~~~lE~~~~f-~~~~~I~dLDWtst~--d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i  118 (631)
T PF12234_consen   42 KIAVVDSSRSELTIWDTRSGVLEYEESF-SEDDPIRDLDWTSTP--DGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPI  118 (631)
T ss_pred             cEEEEECCCCEEEEEEcCCcEEEEeeee-cCCCceeeceeeecC--CCCEEEEEEcCcEEEEEEccchhhhcCCccccee
Confidence            34443444 4899999864322   234 446789999997533  3356788889999999853211111111122233


Q ss_pred             ee--eeccc-cceEEEEEeCCCCEEEEeeCCCcEEEEec
Q 036314          113 KI--LRGHK-ASVHSIAAETSGNMVCSGSWDCTISLWRT  148 (347)
Q Consensus       113 ~~--~~~h~-~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~  148 (347)
                      +.  +..|+ .+|.+..|.++|.+++.+  +..+.|++-
T Consensus       119 ~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk  155 (631)
T PF12234_consen  119 RKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDK  155 (631)
T ss_pred             EEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEECC
Confidence            22  34455 678999999999877644  356788763

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=90.10  E-value=0.044  Score=49.85  Aligned_cols=139  Identities=19%  Similarity=0.200  Sum_probs=87.0

Q ss_pred             CCCCeEEEEecCCcEEEEECCCCceeeeeeeCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCC-CC
Q 036314          195 PQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSH-NS  273 (347)
Q Consensus       195 ~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h-~~  273 (347)
                      +.+..++.+..+..+..||-. ++...........-.++++-.....++.+...+.+.+||+.....    .++... ..
T Consensus        44 ~e~~nlavaca~tiv~~YD~a-gq~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eyt----qqLE~gg~~  118 (615)
T KOG2247|consen   44 PEGHNLAVACANTIVIYYDKA-GQVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYT----QQLESGGTS  118 (615)
T ss_pred             cCCCceehhhhhhHHHhhhhh-cceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhH----HHHhccCcc
Confidence            556668888888899999843 333333322222222333333334455566789999999874321    122111 11


Q ss_pred             CeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecCCCCeEEEEeecCCCEEEEccCCceEE
Q 036314          274 WISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKVLCADWWRGDSVISGGVDSKLC  339 (347)
Q Consensus       274 ~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~D~~v~  339 (347)
                      .-.=..|++.... ++-+-..+.+.|++..+.......--|...+.+.+|-+.++.+.++.|.++.
T Consensus       119 s~sll~wsKg~~e-l~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil~dcd~~L~  183 (615)
T KOG2247|consen  119 SKSLLAWSKGTPE-LVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVILCDCDNTLS  183 (615)
T ss_pred             hHHHHhhccCCcc-ccccccccceEEEeccchhhhhhhcccccceeEEEecccceeeecCcHHHHH
Confidence            1122668877654 7777788999999988765444433388899999998888888888886653

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=90.03  E-value=16  Score=33.81  Aligned_cols=49  Identities=10%  Similarity=0.231  Sum_probs=37.0

Q ss_pred             eEEEEcCCCeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccc
Q 036314           46 LGRVWKAGGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDA   99 (347)
Q Consensus        46 ~i~iw~~~~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~   99 (347)
                      .|++|+..|..+..+.=..+.+.++.|..+.     .|+.-..||+++++|+..
T Consensus        62 ~I~iys~sG~ll~~i~w~~~~iv~~~wt~~e-----~LvvV~~dG~v~vy~~~G  110 (410)
T PF04841_consen   62 SIQIYSSSGKLLSSIPWDSGRIVGMGWTDDE-----ELVVVQSDGTVRVYDLFG  110 (410)
T ss_pred             EEEEECCCCCEeEEEEECCCCEEEEEECCCC-----eEEEEEcCCEEEEEeCCC
Confidence            5999999887766544222889999997632     366778999999999864

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=89.11  E-value=13  Score=31.59  Aligned_cols=63  Identities=13%  Similarity=0.145  Sum_probs=46.4

Q ss_pred             CCCeEEEEecCCcEEEEECCCCceeeeeeeCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCC
Q 036314          196 QQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEGSALIAAGGSDPILRIWDPRK  258 (347)
Q Consensus       196 ~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~  258 (347)
                      -+++++.|...|.+.+.+.++|+..-.+..-..+.+-+....++.++-.|+.|++.+..|++.
T Consensus        62 vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~  124 (354)
T KOG4649|consen   62 VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKT  124 (354)
T ss_pred             ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccc
Confidence            356788899999999999999976655544344443333334556889999999999999875

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=88.39  E-value=19  Score=32.48  Aligned_cols=142  Identities=11%  Similarity=0.127  Sum_probs=69.0

Q ss_pred             ccceEEEEeC-CCCeEEEEecCC-----cEEEEECCCCceeeeeee--Ce---eeEEEEee-CCCCcEEEEecCCCcEEE
Q 036314          186 TQCVSSVVWP-QQETIYSASWDH-----SVRTWDVEMGKDLSDIFC--GK---ALNCIDIG-GEGSALIAAGGSDPILRI  253 (347)
Q Consensus       186 ~~~v~~~~~~-~~~~l~s~s~dg-----~v~vwd~~~~~~~~~~~~--~~---~~~~~~~~-~~~~~~la~~~~d~~i~i  253 (347)
                      ...+..+.|. +++.|+..-.++     .+.++|..++........  ..   ......+. +++..++.....||.-+|
T Consensus       183 ~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hl  262 (353)
T PF00930_consen  183 DYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHL  262 (353)
T ss_dssp             SEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEE
T ss_pred             ccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEE
Confidence            3456677774 444344333332     255678776644222211  10   11223332 555556655557776666


Q ss_pred             EeCCCCCCCCCeEEecCCCCCeeE-EEeCCCCCeEEEEEeCCC--cEEEE--EcCCCccceeecCCCCeEEEEeecC-CC
Q 036314          254 WDPRKPGTSAPVFQFSSHNSWISA-CKWHNKSWFHLISASYDG--KVMLW--DLRTAWPLSVIDSHKDKVLCADWWR-GD  327 (347)
Q Consensus       254 wd~~~~~~~~~~~~~~~h~~~v~~-v~~s~~~~~~l~s~s~D~--~i~lw--d~~~~~~~~~~~~h~~~v~~~~~~~-~~  327 (347)
                      |-....+.  ....+....-.|.. +.+++++.....+|..++  .-.||  +++.+..+..++...+.-..+.||| |+
T Consensus       263 y~~~~~~~--~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~  340 (353)
T PF00930_consen  263 YLYDLDGG--KPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDGK  340 (353)
T ss_dssp             EEEETTSS--EEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTSS
T ss_pred             EEEccccc--ceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCCCC
Confidence            65433221  13344434434544 667888777666776533  44455  5551233455543333336788886 45


Q ss_pred             EE
Q 036314          328 SV  329 (347)
Q Consensus       328 ~l  329 (347)
                      ++
T Consensus       341 y~  342 (353)
T PF00930_consen  341 YY  342 (353)
T ss_dssp             EE
T ss_pred             EE
Confidence            53

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=87.36  E-value=17  Score=30.98  Aligned_cols=138  Identities=14%  Similarity=0.140  Sum_probs=67.4

Q ss_pred             eEEEEe-CCCCeEEEEe-cCCcEEEEECCCCceeeeeeeCeeeEEEEeeCCCCcEEEEecCCCcEEEEe-CCCCCCCCCe
Q 036314          189 VSSVVW-PQQETIYSAS-WDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEGSALIAAGGSDPILRIWD-PRKPGTSAPV  265 (347)
Q Consensus       189 v~~~~~-~~~~~l~s~s-~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd-~~~~~~~~~~  265 (347)
                      +.+.+. ++++.++... .++.-.||-...+.....+.....+..-.|.+. +.+.+....+...+++. .... ...+.
T Consensus        26 ~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g~~l~~PS~d~~-g~~W~v~~~~~~~~~~~~~~~g-~~~~~  103 (253)
T PF10647_consen   26 VTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTGGSLTRPSWDPD-GWVWTVDDGSGGVRVVRDSASG-TGEPV  103 (253)
T ss_pred             ccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccCCccccccccCC-CCEEEEEcCCCceEEEEecCCC-cceeE
Confidence            334444 4666665544 233333443333333333323334445566555 44544544555556652 2221 11111


Q ss_pred             -EEecCCCCCeeEEEeCCCCCeEEEEEe--CCCcEEEEEcCC---Ccc------ceeecCCCCeEEEEeecCCCE
Q 036314          266 -FQFSSHNSWISACKWHNKSWFHLISAS--YDGKVMLWDLRT---AWP------LSVIDSHKDKVLCADWWRGDS  328 (347)
Q Consensus       266 -~~~~~h~~~v~~v~~s~~~~~~l~s~s--~D~~i~lwd~~~---~~~------~~~~~~h~~~v~~~~~~~~~~  328 (347)
                       .....-...|.++++||||.+..+...  .++.|.+=-+..   +.+      ..........+..++|.++..
T Consensus       104 ~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~  178 (253)
T PF10647_consen  104 EVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDST  178 (253)
T ss_pred             EecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCE
Confidence             111111127999999999987544442  356677665432   211      112223346789999986554

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=87.27  E-value=14  Score=33.96  Aligned_cols=38  Identities=18%  Similarity=0.075  Sum_probs=31.1

Q ss_pred             eeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCC
Q 036314          114 ILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDS  151 (347)
Q Consensus       114 ~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~  151 (347)
                      .|......+.++..+|++++++....=|.|.|+|+...
T Consensus       302 ~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~  339 (415)
T PF14655_consen  302 GLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARG  339 (415)
T ss_pred             eeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCC
Confidence            45555666889999999999888877899999998764

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=86.33  E-value=3  Score=23.93  Aligned_cols=31  Identities=16%  Similarity=0.042  Sum_probs=23.0

Q ss_pred             CCCCeEEEEEeCCCcEEEEEcCCCccceeec
Q 036314          282 NKSWFHLISASYDGKVMLWDLRTAWPLSVID  312 (347)
Q Consensus       282 ~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~  312 (347)
                      |++.+++++...+++|.++|..+++.+..+.
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~   31 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIP   31 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEE
Confidence            4566666666678999999998877666654

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=86.05  E-value=14  Score=35.97  Aligned_cols=101  Identities=19%  Similarity=0.273  Sum_probs=58.4

Q ss_pred             eEEEEec-CCcEEEEECCCCceeeeeee--CeeeEEEEeeC-CCCcEEEEecCCCcEEEEeCCC-----CC-CCCCe--E
Q 036314          199 TIYSASW-DHSVRTWDVEMGKDLSDIFC--GKALNCIDIGG-EGSALIAAGGSDPILRIWDPRK-----PG-TSAPV--F  266 (347)
Q Consensus       199 ~l~s~s~-dg~v~vwd~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~la~~~~d~~i~iwd~~~-----~~-~~~~~--~  266 (347)
                      .++.... ...+.|||.+.+........  ...+..++|.+ ++++.+.+-|..+.|.+|--..     .. ...++  .
T Consensus        42 k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i  121 (631)
T PF12234_consen   42 KIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKI  121 (631)
T ss_pred             cEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEE
Confidence            3333333 45699999988764333322  45677787752 3444555556788898885321     11 11122  2


Q ss_pred             EecCCC-CCeeEEEeCCCCCeEEEEEeCCCcEEEEEc
Q 036314          267 QFSSHN-SWISACKWHNKSWFHLISASYDGKVMLWDL  302 (347)
Q Consensus       267 ~~~~h~-~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~  302 (347)
                      .+..|+ ..|.+..|.++|.  |+.|+ +..+.|+|-
T Consensus       122 ~i~~~T~h~Igds~Wl~~G~--LvV~s-GNqlfv~dk  155 (631)
T PF12234_consen  122 DISSHTPHPIGDSIWLKDGT--LVVGS-GNQLFVFDK  155 (631)
T ss_pred             EeecCCCCCccceeEecCCe--EEEEe-CCEEEEECC
Confidence            234454 4688999999983  44444 346777764

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=85.53  E-value=20  Score=30.00  Aligned_cols=95  Identities=12%  Similarity=0.085  Sum_probs=54.7

Q ss_pred             EEEEEeecCCCceEEEEEccCCCcEEEEe--ccccccccCccccceeeeeec---cccc-eEEEEEeCCCCEEEEeeCCC
Q 036314           68 SSVNIIKSDGLKYVTVATASKDQTLRLWK--FDAEELVNHPKKIRSFKILRG---HKAS-VHSIAAETSGNMVCSGSWDC  141 (347)
Q Consensus        68 ~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd--~~~~~~~~~~~~~~~~~~~~~---h~~~-V~~v~~s~~~~~l~sgs~Dg  141 (347)
                      +.++|..+.   -.+.++-|.+-+|..||  .+++.+...    +.+..++.   .... --.+++..+|++.++.=..+
T Consensus       161 Ngl~Wd~d~---K~fY~iDsln~~V~a~dyd~~tG~~snr----~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~  233 (310)
T KOG4499|consen  161 NGLAWDSDA---KKFYYIDSLNYEVDAYDYDCPTGDLSNR----KVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGG  233 (310)
T ss_pred             ccccccccC---cEEEEEccCceEEeeeecCCCcccccCc----ceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCc
Confidence            456776432   24567788889999999  445544321    11111111   1111 12244566788777776677


Q ss_pred             cEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEe
Q 036314          142 TISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW  194 (347)
Q Consensus       142 ~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  194 (347)
                      +|...|..++                         +.+.+++-.+..+++.+|
T Consensus       234 ~V~~~dp~tG-------------------------K~L~eiklPt~qitsccF  261 (310)
T KOG4499|consen  234 TVQKVDPTTG-------------------------KILLEIKLPTPQITSCCF  261 (310)
T ss_pred             EEEEECCCCC-------------------------cEEEEEEcCCCceEEEEe
Confidence            7777776543                         445555556777888887

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=85.48  E-value=3.5  Score=34.34  Aligned_cols=67  Identities=12%  Similarity=0.191  Sum_probs=46.1

Q ss_pred             EEEEccCCCcEEEEeccccccccCccccceeeee-----eccccceEEEEEeCCCCEEEEeeCCCcEEEEecC
Q 036314           82 TVATASKDQTLRLWKFDAEELVNHPKKIRSFKIL-----RGHKASVHSIAAETSGNMVCSGSWDCTISLWRTN  149 (347)
Q Consensus        82 ~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~-----~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~  149 (347)
                      +|+.-+.+|.+.+||+.+.++...+.+..++-..     ......|..+.++.+|.-+++-+ +|....|+..
T Consensus        24 ~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~   95 (219)
T PF07569_consen   24 YLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPD   95 (219)
T ss_pred             EEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccc
Confidence            5778899999999999988765443222222110     03567788888998898777654 4778888753

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=84.72  E-value=38  Score=32.44  Aligned_cols=115  Identities=10%  Similarity=0.177  Sum_probs=63.4

Q ss_pred             cceEEEEeC-----CCCeEEEEecCCcEEEEECCC-----Cceeeeeee--Ce--e--eEEEEeeCCCCcEEEEecCCCc
Q 036314          187 QCVSSVVWP-----QQETIYSASWDHSVRTWDVEM-----GKDLSDIFC--GK--A--LNCIDIGGEGSALIAAGGSDPI  250 (347)
Q Consensus       187 ~~v~~~~~~-----~~~~l~s~s~dg~v~vwd~~~-----~~~~~~~~~--~~--~--~~~~~~~~~~~~~la~~~~d~~  250 (347)
                      ..|.++.|.     +-..|+.....+.|.||.+..     ++.+....+  .+  +  .....|+|.. .+++.=.....
T Consensus        57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~-~iL~VLT~~dv  135 (671)
T PF15390_consen   57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKK-AILTVLTARDV  135 (671)
T ss_pred             ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCC-ceEEEEecCce
Confidence            357888883     233677888899999998752     222222111  11  1  1123455543 34443333333


Q ss_pred             EEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCC
Q 036314          251 LRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRT  304 (347)
Q Consensus       251 i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~  304 (347)
                      --+++.+.... +-...+ ...+.|.|..|.+||.+++++.+..=.-.+||-..
T Consensus       136 SV~~sV~~d~s-rVkaDi-~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q  187 (671)
T PF15390_consen  136 SVLPSVHCDSS-RVKADI-KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ  187 (671)
T ss_pred             eEeeeeeeCCc-eEEEec-cCCceEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence            33556554322 112233 34567999999999987666555544567787543

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=84.63  E-value=2.3  Score=40.99  Aligned_cols=36  Identities=19%  Similarity=0.231  Sum_probs=25.4

Q ss_pred             eeEEEeCC---CCCeEEEEEeCCCcEEEEEcCCCcccee
Q 036314          275 ISACKWHN---KSWFHLISASYDGKVMLWDLRTAWPLSV  310 (347)
Q Consensus       275 v~~v~~s~---~~~~~l~s~s~D~~i~lwd~~~~~~~~~  310 (347)
                      +.+++..+   ++..+|++.+.|+++|+||+++++.+.+
T Consensus       217 ~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~  255 (547)
T PF11715_consen  217 AASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLAT  255 (547)
T ss_dssp             EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEE
T ss_pred             cceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEE
Confidence            34455544   1234799999999999999999887544

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PHA02790 Kelch-like protein; Provisional

Probab=84.31  E-value=38  Score=32.07  Aligned_cols=58  Identities=7%  Similarity=0.003  Sum_probs=29.0

Q ss_pred             CCCeEEEEecCC---cEEEEECCCCceeee--eeeCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCC
Q 036314          196 QQETIYSASWDH---SVRTWDVEMGKDLSD--IFCGKALNCIDIGGEGSALIAAGGSDPILRIWDPRK  258 (347)
Q Consensus       196 ~~~~l~s~s~dg---~v~vwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~  258 (347)
                      ++...+.|+.++   .+..||.++......  +.....-.+++.  -++.+.+.|+   .+..||++.
T Consensus       362 ~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~--~~~~IYv~GG---~~e~ydp~~  424 (480)
T PHA02790        362 NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALV--FGRRLFLVGR---NAEFYCESS  424 (480)
T ss_pred             CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEE--ECCEEEEECC---ceEEecCCC
Confidence            445556666543   467888877654321  111111112211  2345666664   577888764

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=84.31  E-value=3.5  Score=24.25  Aligned_cols=31  Identities=26%  Similarity=0.353  Sum_probs=24.0

Q ss_pred             eeEEEEeeCCCC--cEEEEecCCCcEEEEeCCC
Q 036314          228 ALNCIDIGGEGS--ALIAAGGSDPILRIWDPRK  258 (347)
Q Consensus       228 ~~~~~~~~~~~~--~~la~~~~d~~i~iwd~~~  258 (347)
                      .+.++.|+|.+.  .+++.+-.-+.|.++|++.
T Consensus         2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            356788876555  5788777789999999984

It contains a characteristic DLL sequence motif.

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=83.30  E-value=42  Score=31.83  Aligned_cols=26  Identities=19%  Similarity=0.174  Sum_probs=22.0

Q ss_pred             EEEEEeCCCcEEEEEcCCCccceeec
Q 036314          287 HLISASYDGKVMLWDLRTAWPLSVID  312 (347)
Q Consensus       287 ~l~s~s~D~~i~lwd~~~~~~~~~~~  312 (347)
                      .|..++.||.+..+|.++|+.+-+++
T Consensus       408 ~v~~g~~dG~l~ald~~tG~~lW~~~  433 (488)
T cd00216         408 LVFAGAADGYFRAFDATTGKELWKFR  433 (488)
T ss_pred             eEEEECCCCeEEEEECCCCceeeEEE
Confidence            57888899999999999998776654

The alignment model contains an 8-bladed beta-propeller.

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=83.20  E-value=6.1  Score=22.55  Aligned_cols=31  Identities=23%  Similarity=0.297  Sum_probs=20.9

Q ss_pred             CCCeEEE-EecCCcEEEEECCCCceeeeeeeC
Q 036314          196 QQETIYS-ASWDHSVRTWDVEMGKDLSDIFCG  226 (347)
Q Consensus       196 ~~~~l~s-~s~dg~v~vwd~~~~~~~~~~~~~  226 (347)
                      +++.|+. .-.+++|.++|..+++.+..+..+
T Consensus         2 d~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg   33 (42)
T TIGR02276         2 DGTKLYVTNSGSNTVSVIDTATNKVIATIPVG   33 (42)
T ss_pred             CCCEEEEEeCCCCEEEEEECCCCeEEEEEECC
Confidence            4555544 445789999999887766665543

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PHA03098 kelch-like protein; Provisional

Probab=82.92  E-value=46  Score=31.94  Aligned_cols=47  Identities=11%  Similarity=0.180  Sum_probs=23.0

Q ss_pred             EEEEECCCCceeee--eeeCee-eEEEEeeCCCCcEEEEecCC-----CcEEEEeCCC
Q 036314          209 VRTWDVEMGKDLSD--IFCGKA-LNCIDIGGEGSALIAAGGSD-----PILRIWDPRK  258 (347)
Q Consensus       209 v~vwd~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~la~~~~d-----~~i~iwd~~~  258 (347)
                      +.+||..+.+....  +..... .....+   ++.+++.||.+     +.+..||+..
T Consensus       458 v~~yd~~~~~W~~~~~~~~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~v~~yd~~~  512 (534)
T PHA03098        458 VESYNPVTNKWTELSSLNFPRINASLCIF---NNKIYVVGGDKYEYYINEIEVYDDKT  512 (534)
T ss_pred             EEEecCCCCceeeCCCCCcccccceEEEE---CCEEEEEcCCcCCcccceeEEEeCCC
Confidence            78889887654321  111111 111122   34466666653     4667777653

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=82.78  E-value=30  Score=36.28  Aligned_cols=167  Identities=14%  Similarity=0.126  Sum_probs=82.6

Q ss_pred             ecCCeEEEEcCC-CeEEEEeeccCCceEEEEEeecCCCc-----eEEEEEccCCCcEEEEeccccccccCccccceeeee
Q 036314           42 CYDNLGRVWKAG-GVCTHILEGHCGAVSSVNIIKSDGLK-----YVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKIL  115 (347)
Q Consensus        42 ~~d~~i~iw~~~-~~~~~~l~~h~~~V~~v~~~~~~~~~-----~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~  115 (347)
                      ..|+.+.+|+.. +...+.+.+-...|..|.........     .+.|+.+. --.|-++-+.-.+.............+
T Consensus        96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT-~~ei~ilgV~~~~~~~~~~~f~~~~~i  174 (1311)
T KOG1900|consen   96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVAT-PVEIVILGVSFDEFTGELSIFNTSFKI  174 (1311)
T ss_pred             EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecc-cceEEEEEEEeccccCcccccccceee
Confidence            358899999964 35556667666666666654322111     11222222 235677765433221110000010112


Q ss_pred             eccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCC---c-cceeeeccCCCccccccccccccccccCCccceEE
Q 036314          116 RGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAG---N-QVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSS  191 (347)
Q Consensus       116 ~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~  191 (347)
                      .-..-.|+++....+|+.+++| .||  .||.+.-....+   + ........+...    .+-.+.++..-.+.++|..
T Consensus       175 ~~dg~~V~~I~~t~nGRIF~~G-~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls----~lvPs~~~~~~~~~dpI~q  247 (1311)
T KOG1900|consen  175 SVDGVSVNCITYTENGRIFFAG-RDG--NLYELVYQAEDGWFGSRCRKICLTKSVLS----SLVPSLLSVPGSSKDPIRQ  247 (1311)
T ss_pred             ecCCceEEEEEeccCCcEEEee-cCC--CEEEEEEeccCchhhcccccccCchhHHH----HhhhhhhcCCCCCCCccee
Confidence            2224557888878888887754 555  566543211000   0 000000000000    0001111111246678999


Q ss_pred             EEeCCCC-eEEEEecCCcEEEEECCC
Q 036314          192 VVWPQQE-TIYSASWDHSVRTWDVEM  216 (347)
Q Consensus       192 ~~~~~~~-~l~s~s~dg~v~vwd~~~  216 (347)
                      +...+.. .+++-+..++|++||+..
T Consensus       248 i~ID~SR~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  248 ITIDNSRNILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             eEeccccceeeeeccCceEEEEEccC
Confidence            9886544 578889999999999965

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=82.16  E-value=63  Score=33.01  Aligned_cols=50  Identities=18%  Similarity=0.324  Sum_probs=37.9

Q ss_pred             EeCCCcEEEEEcCCCccceeecCCCCeEEEEeec-CCCEEEEccCCceEEE
Q 036314          291 ASYDGKVMLWDLRTAWPLSVIDSHKDKVLCADWW-RGDSVISGGVDSKLCV  340 (347)
Q Consensus       291 ~s~D~~i~lwd~~~~~~~~~~~~h~~~v~~~~~~-~~~~l~s~s~D~~v~v  340 (347)
                      ++-+..|+++++.+++.++.-..|...+..+... .|+.++.|..=+.+.+
T Consensus       844 A~In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitl  894 (1096)
T KOG1897|consen  844 AGINQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITL  894 (1096)
T ss_pred             EecCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEE
Confidence            4677899999999886677667788888877775 5778887776665554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	347
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		3e-19
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		7e-04
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		8e-19
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		4e-04
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		7e-16
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		4e-10
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		3e-12
3izb_a	319	Localization Of The Small Subunit Ribosomal Protein		1e-10
3jyv_R	313	Structure Of The 40s Rrna And Proteins And PE TRNA		1e-10
2gnq_A	336	Structure Of Wdr5 Length = 336		1e-10
2gnq_A	336	Structure Of Wdr5 Length = 336		2e-09
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		1e-10
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		2e-09
3rfg_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		1e-10
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		1e-10
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		2e-09
1trj_A	314	Homology Model Of Yeast Rack1 Protein Fitted Into 1		1e-10
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		1e-10
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		1e-10
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		3e-09
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		1e-10
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		2e-09
2h9l_A	329	Wdr5delta23 Length = 329		1e-10
2h9l_A	329	Wdr5delta23 Length = 329		2e-09
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		2e-10
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		2e-09
3rfh_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		2e-10
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		2e-10
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		2e-09
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		2e-10
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		3e-09
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		2e-10
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		3e-09
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		2e-10
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		2e-09
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		2e-10
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		3e-09
2g99_A	308	Structural Basis For The Specific Recognition Of Me		2e-10
2g99_A	308	Structural Basis For The Specific Recognition Of Me		3e-09
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		2e-10
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		3e-09
3c99_A	432	Structural Basis Of Histone H4 Recognition By P55 L		2e-10
2xyi_A	430	Crystal Structure Of Nurf55 In Complex With A H4 Pe		2e-10
2yba_A	422	Crystal Structure Of Nurf55 In Complex With Histone		2e-10
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		2e-10
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		5e-09
3cfs_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		3e-10
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		3e-10
3cfv_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		3e-10
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		9e-10
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		2e-09
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		9e-10
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		2e-09
3frx_A	319	Crystal Structure Of The Yeast Orthologue Of Rack1,		1e-09
3gfc_A	425	Crystal Structure Of Histone-Binding Protein Rbbp4		2e-09
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		3e-09
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		2e-08
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		5e-08
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		8e-04
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		7e-08
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		4e-07
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		2e-06
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		1e-05
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		2e-06
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		1e-05
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		8e-06
2hes_X	330	Cytosolic Iron-sulphur Assembly Protein- 1 Length =		8e-06
2aq5_A	402	Crystal Structure Of Murine Coronin-1 Length = 402		1e-05
2aq5_A	402	Crystal Structure Of Murine Coronin-1 Length = 402		7e-04
3jpx_A	402	Eed: A Novel Histone Trimethyllysine Binder Within		2e-05
3jzn_A	366	Structure Of Eed In Apo Form Length = 366		2e-05
2qxv_A	361	Structural Basis Of Ezh2 Recognition By Eed Length		2e-05
3iiy_A	365	Crystal Structure Of Eed In Complex With A Trimethy		2e-05
3iiw_A	365	Crystal Structure Of Eed In Complex With A Trimethy		2e-05
2b4e_A	402	Crystal Structure Of Murine Coronin-1: Monoclinic F		3e-05
2b4e_A	402	Crystal Structure Of Murine Coronin-1: Monoclinic F		2e-04
4i79_A	399	Crystal Structure Of Human Nup43 Length = 399		8e-05
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		2e-04
3sn6_B	351	Crystal Structure Of The Beta2 Adrenergic Receptor-		4e-04
1gg2_B	340	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		4e-04
1got_B	340	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		4e-04
2bcj_B	340	Crystal Structure Of G Protein-coupled Receptor Kin		4e-04
1a0r_B	340	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		4e-04
3vl1_A	420	Crystal Structure Of Yeast Rpn14 Length = 420		5e-04
3acp_A	417	Crystal Structure Of Yeast Rpn14, A Chaperone Of Th		6e-04
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		6e-04
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		6e-04
4a11_B	408	Structure Of The Hsddb1-Hscsa Complex Length = 408		8e-04
3odt_A	313	Crystal Structure Of Wd40 Beta Propeller Domain Of		8e-04

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 92.4 bits (228), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 83/299 (27%), Positives = 140/299 (46%), Gaps = 53/299 (17%)
Query: 23  HDDWVSAVDGSNPGFILTGCYDNLGRVWK-AGGVCTHILEGHCGAVSSVNIIKSDGLKYV 81
           HD  V A+  ++ G +++G  D   RVW    G CTH+ EGH   V  ++I++   +KY 
Sbjct: 161 HDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKY- 219
Query: 82  TVATASKDQTLRLWKFDAEE------------LVNH-PKKIRSF-KILRGHKASVHSIAA 127
            + T S+D TL +WK   E             LV H P++   F  +LRGH ASV +++ 
Sbjct: 220 -IVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSG 278
Query: 128 ETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQ 187
              GN+V SGS+D T+ +W     D A                    + + +  L GHT 
Sbjct: 279 H--GNIVVSGSYDNTLIVW-----DVA--------------------QMKCLYILSGHTD 311
Query: 188 CVSSVVWP-QQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEGSALIAAGG 246
            + S ++  +++   SAS D ++R WD+E G+ +  +    AL  + +       + +  
Sbjct: 312 RIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTAL--VGLLRLSDKFLVSAA 369
Query: 247 SDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTA 305
           +D  +R WD           +FS H++ +SA      S   L+S S + +  +++LR+ 
Sbjct: 370 ADGSIRGWDANDYSR-----KFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSG 422

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 55/235 (23%), Positives = 92/235 (39%), Gaps = 49/235 (20%)
Query: 105 HPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRK 164
           +PK +     LRGH  SV +   +   N V +G+ D  I ++            SI K+ 
Sbjct: 107 NPKFVPQRTTLRGHMTSVIT-CLQFEDNYVITGADDKMIRVYD-----------SINKK- 153
Query: 165 GNNQVEEPQLEGEAISTLVGHTQCVSSVVWPQQETIYSASWDHSVRTWDVEMGKDLSDIF 224
                         +  L GH   V ++ +     + S S D +VR WD++ G   + +F
Sbjct: 154 -------------FLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGC-CTHVF 199
Query: 225 CG--KALNCIDI-GGEGSALIAAGGSDPILRIWDPRKPGTSAP----------VFQFSSH 271
            G    + C+DI   +    I  G  D  L +W   K  +S P          VF     
Sbjct: 200 EGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKE-SSVPDHGEEHDYPLVFHTPEE 258
Query: 272 NSW-ISACKWHNKSWFHL-------ISASYDGKVMLWDLRTAWPLSVIDSHKDKV 318
           N + +   + H  S   +       +S SYD  +++WD+     L ++  H D++
Sbjct: 259 NPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRI 313

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 91.3 bits (225), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 83/299 (27%), Positives = 139/299 (46%), Gaps = 53/299 (17%)
Query: 23  HDDWVSAVDGSNPGFILTGCYDNLGRVWK-AGGVCTHILEGHCGAVSSVNIIKSDGLKYV 81
           HD  V A+  ++ G +++G  D   RVW    G CTH+ EGH   V  ++I++   +KY 
Sbjct: 161 HDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKY- 219
Query: 82  TVATASKDQTLRLWKFDAEE------------LVNH-PKKIRSF-KILRGHKASVHSIAA 127
            + T S+D TL +WK   E             LV H P++   F  +LRGH ASV +++ 
Sbjct: 220 -IVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTVSG 278
Query: 128 ETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQ 187
              GN+V SGS+D T+ +W     D A                    + + +  L GHT 
Sbjct: 279 H--GNIVVSGSYDNTLIVW-----DVA--------------------QXKCLYILSGHTD 311
Query: 188 CVSSVVWP-QQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEGSALIAAGG 246
            + S ++  +++   SAS D ++R WD+E G+    +    AL  + +       + +  
Sbjct: 312 RIYSTIYDHERKRCISASXDTTIRIWDLENGELXYTLQGHTAL--VGLLRLSDKFLVSAA 369
Query: 247 SDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTA 305
           +D  +R WD           +FS H++ +SA      S   L+S S + +  +++LR+ 
Sbjct: 370 ADGSIRGWDANDYSR-----KFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSG 422

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 55/235 (23%), Positives = 92/235 (39%), Gaps = 49/235 (20%)
Query: 105 HPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRK 164
           +PK +     LRGH  SV +   +   N V +G+ D  I ++            SI K+ 
Sbjct: 107 NPKFVPQRTTLRGHXTSVIT-CLQFEDNYVITGADDKXIRVYD-----------SINKK- 153
Query: 165 GNNQVEEPQLEGEAISTLVGHTQCVSSVVWPQQETIYSASWDHSVRTWDVEMGKDLSDIF 224
                         +  L GH   V ++ +     + S S D +VR WD++ G   + +F
Sbjct: 154 -------------FLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGC-CTHVF 199
Query: 225 CG--KALNCIDI-GGEGSALIAAGGSDPILRIWDPRKPGTSAP----------VFQFSSH 271
            G    + C+DI   +    I  G  D  L +W   K  +S P          VF     
Sbjct: 200 EGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKE-SSVPDHGEEHDYPLVFHTPEE 258
Query: 272 NSW-ISACKWHNKSWFHL-------ISASYDGKVMLWDLRTAWPLSVIDSHKDKV 318
           N + +   + H  S   +       +S SYD  +++WD+     L ++  H D++
Sbjct: 259 NPYFVGVLRGHXASVRTVSGHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRI 313

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 81.3 bits (199), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 75/271 (27%), Positives = 120/271 (44%), Gaps = 51/271 (18%)
Query: 37  FILTGCYDNLGRVWKA-GGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLW 95
            I++G  D   +VW A  G C H L GH   V  ++      L    V + S+D TLR+W
Sbjct: 171 IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMH------LHEKRVVSGSRDATLRVW 224
Query: 96  KFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAG 155
             +  + ++         +L GH A+V  +  +  G  V SG++D  + +W         
Sbjct: 225 DIETGQCLH---------VLMGHVAAVRCV--QYDGRRVVSGAYDFMVKVW--------- 264
Query: 156 NQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWPQQETIYSASWDHSVRTWDVE 215
                          +P+ E   + TL GHT  V S+ +     + S S D S+R WDVE
Sbjct: 265 ---------------DPETE-TCLHTLQGHTNRVYSLQFDGIHVV-SGSLDTSIRVWDVE 307
Query: 216 MGKDLSDIFCGKALNCIDIGGE-GSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSW 274
            G  +  +   ++L     G E    ++ +G +D  ++IWD  K G      Q  + +  
Sbjct: 308 TGNCIHTLTGHQSLTS---GMELKDNILVSGNADSTVKIWDI-KTGQCLQTLQGPNKHQS 363
Query: 275 ISACKWHNKSWFHLISASYDGKVMLWDLRTA 305
              C   NK++  +I++S DG V LWDL+T 
Sbjct: 364 AVTCLQFNKNF--VITSSDDGTVKLWDLKTG 392

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 62.4 bits (150), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 58/258 (22%), Positives = 107/258 (41%), Gaps = 50/258 (19%)
Query: 83  VATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCT 142
           + + S D TL++W              +  + L GH   V S  ++   N++ SGS D T
Sbjct: 132 IVSGSDDNTLKVWSAVTG---------KCLRTLVGHTGGVWS--SQMRDNIIISGSTDRT 180
Query: 143 ISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWPQQETIYS 202
           + +W                             GE I TL GHT  V  +    ++ + S
Sbjct: 181 LKVWNAE-------------------------TGECIHTLYGHTSTVRCM-HLHEKRVVS 214
Query: 203 ASWDHSVRTWDVEMGKDLSDIFCGK--ALNCIDIGGEGSALIAAGGSDPILRIWDPRKPG 260
            S D ++R WD+E G+ L  +  G   A+ C+   G     + +G  D ++++WDP    
Sbjct: 215 GSRDATLRVWDIETGQCLH-VLMGHVAAVRCVQYDGRR---VVSGAYDFMVKVWDPE--- 267
Query: 261 TSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKVLC 320
           T   +     H + + + ++      H++S S D  + +WD+ T   +  +  H+  +  
Sbjct: 268 TETCLHTLQGHTNRVYSLQFDG---IHVVSGSLDTSIRVWDVETGNCIHTLTGHQS-LTS 323
Query: 321 ADWWRGDSVISGGVDSKL 338
               + + ++SG  DS +
Sbjct: 324 GMELKDNILVSGNADSTV 341

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 69.3 bits (168), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 65/273 (23%), Positives = 120/273 (43%), Gaps = 54/273 (19%)
Query: 38  ILTGCYDNLGRVWKAG-GVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWK 96
           I+TG  D+  RVW    G   + L  HC AV  +    ++G+    + T SKD+++ +W 
Sbjct: 186 IITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRF--NNGM----MVTCSKDRSIAVWD 239
Query: 97  FDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGN 156
             +      P  I   ++L GH+A+V+ +  +     + S S D TI +W T+       
Sbjct: 240 MAS------PTDITLRRVLVGHRAAVNVV--DFDDKYIVSASGDRTIKVWNTSTC----- 286
Query: 157 QVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWPQQETIYSASWDHSVRTWDVEM 216
                               E + TL GH + ++ + + +   + S S D+++R WD+E 
Sbjct: 287 --------------------EFVRTLNGHKRGIACLQY-RDRLVVSGSSDNTIRLWDIEC 325
Query: 217 GKDLSDIFCGKAL-NCIDIGGEGSALIAAGGSDPILRIWD------PRKPGTSAPVFQFS 269
           G  L  +   + L  CI    +    I +G  D  +++WD      PR P  +  +    
Sbjct: 326 GACLRVLEGHEELVRCIRFDNKR---IVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLV 382
Query: 270 SHNSWISACKWHNKSWFHLISASYDGKVMLWDL 302
            H+  +   ++     F ++S+S+D  +++WD 
Sbjct: 383 EHSGRVFRLQFDE---FQIVSSSHDDTILIWDF 412

>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 76/304 (25%), Positives = 125/304 (41%), Gaps = 67/304 (22%)
Query: 23  HDDWVS--AVDGSNPGFILTGCYDNLGRVWKAGG------VCTHILEGHCGAVSSVNIIK 74
           H+ WV+  A     P  +L+   D     WK  G      V     +GH   V    +  
Sbjct: 16  HNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTL-T 74
Query: 75  SDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMV 134
           +DG   ++   AS D+TLRLW     E         +++   GHK+ V S+  +   +M+
Sbjct: 75  ADGAYALS---ASWDKTLRLWDVATGE---------TYQRFVGHKSDVMSVDIDKKASMI 122
Query: 135 CSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSV-V 193
            SGS D TI +W                           ++G+ ++TL+GH   VS V V
Sbjct: 123 ISGSRDKTIKVW--------------------------TIKGQCLATLLGHNDWVSQVRV 156
Query: 194 WPQQE------TIYSASWDHSVRTWDVEMGKDLSDIFCG--KALNCIDIGGEGSALIAAG 245
            P ++      TI SA  D  V+ W++   +  +D F G    +N +    +G+ LIA+ 
Sbjct: 157 VPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEAD-FIGHNSNINTLTASPDGT-LIASA 214
Query: 246 GSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISA------SYDGKVML 299
           G D  + +W+         ++  S+ +   S     N+ W    +A      S D + ++
Sbjct: 215 GKDGEIMLWN---LAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLV 271
Query: 300 WDLR 303
            DLR
Sbjct: 272 DDLR 275

>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 76/304 (25%), Positives = 125/304 (41%), Gaps = 67/304 (22%)
Query: 23  HDDWVS--AVDGSNPGFILTGCYDNLGRVWKAGG------VCTHILEGHCGAVSSVNIIK 74
           H+ WV+  A     P  +L+   D     WK  G      V     +GH   V    +  
Sbjct: 10  HNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTL-T 68
Query: 75  SDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMV 134
           +DG   ++   AS D+TLRLW     E         +++   GHK+ V S+  +   +M+
Sbjct: 69  ADGAYALS---ASWDKTLRLWDVATGE---------TYQRFVGHKSDVMSVDIDKKASMI 116
Query: 135 CSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSV-V 193
            SGS D TI +W                           ++G+ ++TL+GH   VS V V
Sbjct: 117 ISGSRDKTIKVW--------------------------TIKGQCLATLLGHNDWVSQVRV 150
Query: 194 WPQQE------TIYSASWDHSVRTWDVEMGKDLSDIFCG--KALNCIDIGGEGSALIAAG 245
            P ++      TI SA  D  V+ W++   +  +D F G    +N +    +G+ LIA+ 
Sbjct: 151 VPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEAD-FIGHNSNINTLTASPDGT-LIASA 208
Query: 246 GSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISA------SYDGKVML 299
           G D  + +W+         ++  S+ +   S     N+ W    +A      S D + ++
Sbjct: 209 GKDGEIMLWN---LAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLV 265
Query: 300 WDLR 303
            DLR
Sbjct: 266 DDLR 269

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 66/264 (25%), Positives = 109/264 (41%), Gaps = 46/264 (17%)
Query: 60  LEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLW-KFDAEELVNHPKKIRSFKILRGH 118
           L GH  AVSSV    +       +A++S D+ +++W  +D           +  K + GH
Sbjct: 43  LAGHTKAVSSVKFSPNGEW----LASSSADKLIKIWGAYDG----------KFEKTISGH 88
Query: 119 KASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEA 178
           K  +  +A  +  N++ S S D T+ +W  +                          G+ 
Sbjct: 89  KLGISDVAWSSDSNLLVSASDDKTLKIWDVS-------------------------SGKC 123
Query: 179 ISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFC-GKALNCIDIGG 236
           + TL GH+  V    + PQ   I S S+D SVR WDV+ GK L  +      ++ +    
Sbjct: 124 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 183
Query: 237 EGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGK 296
           +GS LI +   D + RIWD         +      N  +S  K+     + +++A+ D  
Sbjct: 184 DGS-LIVSSSYDGLCRIWDTASGQCLKTLID--DDNPPVSFVKFSPNGKY-ILAATLDNT 239
Query: 297 VMLWDLRTAWPLSVIDSHKDKVLC 320
           + LWD      L     HK++  C
Sbjct: 240 LKLWDYSKGKCLKTYTGHKNEKYC 263

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 75/161 (46%), Gaps = 7/161 (4%)
Query: 181 TLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIG-GEG 238
           TL GHT+ VSSV + P  E + S+S D  ++ W    GK       G  L   D+     
Sbjct: 42  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-FEKTISGHKLGISDVAWSSD 100
Query: 239 SALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVM 298
           S L+ +   D  L+IWD     +   +     H++++  C ++ +S   ++S S+D  V 
Sbjct: 101 SNLLVSASDDKTLKIWDV---SSGKCLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDESVR 156
Query: 299 LWDLRTAWPLSVIDSHKDKVLCADWWRGDSVISGGVDSKLC 339
           +WD++T   L  + +H D V    + R  S+I       LC
Sbjct: 157 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 197

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 66/264 (25%), Positives = 109/264 (41%), Gaps = 46/264 (17%)
Query: 60  LEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLW-KFDAEELVNHPKKIRSFKILRGH 118
           L GH  AVSSV    +       +A++S D+ +++W  +D           +  K + GH
Sbjct: 22  LAGHTKAVSSVKFSPNGEW----LASSSADKLIKIWGAYDG----------KFEKTISGH 67
Query: 119 KASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEA 178
           K  +  +A  +  N++ S S D T+ +W  +                          G+ 
Sbjct: 68  KLGISDVAWSSDSNLLVSASDDKTLKIWDVS-------------------------SGKC 102
Query: 179 ISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFC-GKALNCIDIGG 236
           + TL GH+  V    + PQ   I S S+D SVR WDV+ GK L  +      ++ +    
Sbjct: 103 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 162
Query: 237 EGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGK 296
           +GS LI +   D + RIWD         +      N  +S  K+     + +++A+ D  
Sbjct: 163 DGS-LIVSSSYDGLCRIWDTASGQCLKTLID--DDNPPVSFVKFSPNGKY-ILAATLDNT 218
Query: 297 VMLWDLRTAWPLSVIDSHKDKVLC 320
           + LWD      L     HK++  C
Sbjct: 219 LKLWDYSKGKCLKTYTGHKNEKYC 242

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 75/161 (46%), Gaps = 7/161 (4%)
Query: 181 TLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIG-GEG 238
           TL GHT+ VSSV + P  E + S+S D  ++ W    GK       G  L   D+     
Sbjct: 21  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-FEKTISGHKLGISDVAWSSD 79
Query: 239 SALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVM 298
           S L+ +   D  L+IWD     +   +     H++++  C ++ +S   ++S S+D  V 
Sbjct: 80  SNLLVSASDDKTLKIWDVS---SGKCLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDESVR 135
Query: 299 LWDLRTAWPLSVIDSHKDKVLCADWWRGDSVISGGVDSKLC 339
           +WD++T   L  + +H D V    + R  S+I       LC
Sbjct: 136 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 176

>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 76/304 (25%), Positives = 125/304 (41%), Gaps = 67/304 (22%)
Query: 23  HDDWVS--AVDGSNPGFILTGCYDNLGRVWKAGG------VCTHILEGHCGAVSSVNIIK 74
           H+ WV+  A     P  +L+   D     WK  G      V     +GH   V    +  
Sbjct: 16  HNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLT- 74
Query: 75  SDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMV 134
           +DG   ++   AS D+TLRLW     E         +++   GHK+ V S+  +   +M+
Sbjct: 75  ADGAYALS---ASWDKTLRLWDVATGE---------TYQRFVGHKSDVMSVDIDKKASMI 122
Query: 135 CSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSV-V 193
            SGS D TI +W                           ++G+ ++TL+GH   VS V V
Sbjct: 123 ISGSRDKTIKVW--------------------------TIKGQCLATLLGHNDWVSQVRV 156
Query: 194 WPQQE------TIYSASWDHSVRTWDVEMGKDLSDIFCG--KALNCIDIGGEGSALIAAG 245
            P ++      TI SA  D  V+ W++   +  +D F G    +N +    +G+ LIA+ 
Sbjct: 157 VPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEAD-FIGHNSNINTLTASPDGT-LIASA 214
Query: 246 GSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISA------SYDGKVML 299
           G D  + +W+         ++  S+ +   S     N+ W    +A      S D + ++
Sbjct: 215 GKDGEIMLWN---LAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLV 271
Query: 300 WDLR 303
            DLR
Sbjct: 272 DDLR 275

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 66/264 (25%), Positives = 109/264 (41%), Gaps = 46/264 (17%)
Query: 60  LEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLW-KFDAEELVNHPKKIRSFKILRGH 118
           L GH  AVSSV    +       +A++S D+ +++W  +D           +  K + GH
Sbjct: 22  LAGHTKAVSSVKFSPNGEW----LASSSADKLIKIWGAYDG----------KFEKTISGH 67
Query: 119 KASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEA 178
           K  +  +A  +  N++ S S D T+ +W  +                          G+ 
Sbjct: 68  KLGISDVAWSSDSNLLVSASDDKTLKIWDVS-------------------------SGKC 102
Query: 179 ISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFC-GKALNCIDIGG 236
           + TL GH+  V    + PQ   I S S+D SVR WDV+ GK L  +      ++ +    
Sbjct: 103 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 162
Query: 237 EGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGK 296
           +GS LI +   D + RIWD         +      N  +S  K+     + +++A+ D  
Sbjct: 163 DGS-LIVSSSYDGLCRIWDTASGQCLKTLID--DDNPPVSFVKFSPNGKY-ILAATLDNT 218
Query: 297 VMLWDLRTAWPLSVIDSHKDKVLC 320
           + LWD      L     HK++  C
Sbjct: 219 LKLWDYSKGKCLKTYTGHKNEKYC 242

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 75/161 (46%), Gaps = 7/161 (4%)
Query: 181 TLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIG-GEG 238
           TL GHT+ VSSV + P  E + S+S D  ++ W    GK       G  L   D+     
Sbjct: 21  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-FEKTISGHKLGISDVAWSSD 79
Query: 239 SALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVM 298
           S L+ +   D  L+IWD     +   +     H++++  C ++ +S   ++S S+D  V 
Sbjct: 80  SNLLVSASDDKTLKIWDVS---SGKCLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDESVR 135
Query: 299 LWDLRTAWPLSVIDSHKDKVLCADWWRGDSVISGGVDSKLC 339
           +WD++T   L  + +H D V    + R  S+I       LC
Sbjct: 136 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 176

>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 76/304 (25%), Positives = 124/304 (40%), Gaps = 67/304 (22%)
Query: 23  HDDWVS--AVDGSNPGFILTGCYDNLGRVWKAGG------VCTHILEGHCGAVSSVNIIK 74
           H+ WV+  A     P  +L+   D     WK  G      V     +GH   V    +  
Sbjct: 16  HNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLT- 74
Query: 75  SDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMV 134
           +DG       +AS D+TLRLW     E         +++   GHK+ V S+  +   +M+
Sbjct: 75  ADG---AYALSASWDKTLRLWDVATGE---------TYQRFVGHKSDVMSVDIDKKASMI 122
Query: 135 CSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSV-V 193
            SGS D TI +W                           ++G+ ++TL+GH   VS V V
Sbjct: 123 ISGSRDKTIKVW--------------------------TIKGQCLATLLGHNDWVSQVRV 156
Query: 194 WPQQE------TIYSASWDHSVRTWDVEMGKDLSDIFCG--KALNCIDIGGEGSALIAAG 245
            P ++      TI SA  D  V+ W++   +  +D F G    +N +    +G+ LIA+ 
Sbjct: 157 VPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEAD-FIGHNSNINTLTASPDGT-LIASA 214
Query: 246 GSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISA------SYDGKVML 299
           G D  + +W+         ++  S+ +   S     N+ W    +A      S D + ++
Sbjct: 215 GKDGEIMLWN---LAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLV 271
Query: 300 WDLR 303
            DLR
Sbjct: 272 DDLR 275

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 76/304 (25%), Positives = 122/304 (40%), Gaps = 54/304 (17%)
Query: 38  ILTGCYDNLGRVWKAGGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKF 97
           I +   D   ++W   G     L GH  +V  V     DG    T+A+AS D+T++LW  
Sbjct: 195 IASASDDKTVKLWNRNGQLLQTLTGHSSSVRGV-AFSPDGQ---TIASASDDKTVKLWNR 250
Query: 98  DAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQ 157
           + + L          + L GH +SV+ +A    G  + S S D T+ LW  N        
Sbjct: 251 NGQLL----------QTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRN-------- 292
Query: 158 VSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEM 216
                             G+ + TL GH+  V  V + P  +TI SAS D +V+ W+   
Sbjct: 293 ------------------GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RN 333
Query: 217 GKDLSDIFCGKALNC--IDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQ-FSSHNS 273
           G+ L     G + +   +    +G   IA+   D  +++W+      +  + Q  + H+S
Sbjct: 334 GQHL-QTLTGHSSSVWGVAFSPDGQT-IASASDDKTVKLWNR-----NGQLLQTLTGHSS 386
Query: 274 WISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKVLCADWWRGDSVISGG 333
            +    +       + SAS D  V LW+ R    L  +  H   V    +   D  I+  
Sbjct: 387 SVRGVAFSPDGQT-IASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDDQTIASA 444
Query: 334 VDSK 337
            D K
Sbjct: 445 SDDK 448

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 66/264 (25%), Positives = 109/264 (41%), Gaps = 46/264 (17%)
Query: 60  LEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLW-KFDAEELVNHPKKIRSFKILRGH 118
           L GH  AVSSV    +       +A++S D+ +++W  +D           +  K + GH
Sbjct: 25  LAGHTKAVSSVKFSPNGEW----LASSSADKLIKIWGAYDG----------KFEKTISGH 70
Query: 119 KASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEA 178
           K  +  +A  +  N++ S S D T+ +W  +                          G+ 
Sbjct: 71  KLGISDVAWSSDSNLLVSASDDKTLKIWDVS-------------------------SGKC 105
Query: 179 ISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFC-GKALNCIDIGG 236
           + TL GH+  V    + PQ   I S S+D SVR WDV+ GK L  +      ++ +    
Sbjct: 106 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 165
Query: 237 EGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGK 296
           +GS LI +   D + RIWD         +      N  +S  K+     + +++A+ D  
Sbjct: 166 DGS-LIVSSSYDGLCRIWDTASGQCLKTLID--DDNPPVSFVKFSPNGKY-ILAATLDNT 221
Query: 297 VMLWDLRTAWPLSVIDSHKDKVLC 320
           + LWD      L     HK++  C
Sbjct: 222 LKLWDYSKGKCLKTYTGHKNEKYC 245

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 75/161 (46%), Gaps = 7/161 (4%)
Query: 181 TLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIG-GEG 238
           TL GHT+ VSSV + P  E + S+S D  ++ W    GK       G  L   D+     
Sbjct: 24  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-FEKTISGHKLGISDVAWSSD 82
Query: 239 SALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVM 298
           S L+ +   D  L+IWD     +   +     H++++  C ++ +S   ++S S+D  V 
Sbjct: 83  SNLLVSASDDKTLKIWDV---SSGKCLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDESVR 138
Query: 299 LWDLRTAWPLSVIDSHKDKVLCADWWRGDSVISGGVDSKLC 339
           +WD++T   L  + +H D V    + R  S+I       LC
Sbjct: 139 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 179

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 66/264 (25%), Positives = 109/264 (41%), Gaps = 46/264 (17%)
Query: 60  LEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLW-KFDAEELVNHPKKIRSFKILRGH 118
           L GH  AVSSV    +       +A++S D+ +++W  +D           +  K + GH
Sbjct: 41  LAGHTKAVSSVKFSPNGEW----LASSSADKLIKIWGAYDG----------KFEKTISGH 86
Query: 119 KASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEA 178
           K  +  +A  +  N++ S S D T+ +W  +                          G+ 
Sbjct: 87  KLGISDVAWSSDSNLLVSASDDKTLKIWDVS-------------------------SGKC 121
Query: 179 ISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFC-GKALNCIDIGG 236
           + TL GH+  V    + PQ   I S S+D SVR WDV+ GK L  +      ++ +    
Sbjct: 122 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 181
Query: 237 EGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGK 296
           +GS LI +   D + RIWD         +      N  +S  K+     + +++A+ D  
Sbjct: 182 DGS-LIVSSSYDGLCRIWDTASGQCLKTLID--DDNPPVSFVKFSPNGKY-ILAATLDNT 237
Query: 297 VMLWDLRTAWPLSVIDSHKDKVLC 320
           + LWD      L     HK++  C
Sbjct: 238 LKLWDYSKGKCLKTYTGHKNEKYC 261

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 75/161 (46%), Gaps = 7/161 (4%)
Query: 181 TLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIG-GEG 238
           TL GHT+ VSSV + P  E + S+S D  ++ W    GK       G  L   D+     
Sbjct: 40  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-FEKTISGHKLGISDVAWSSD 98
Query: 239 SALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVM 298
           S L+ +   D  L+IWD     +   +     H++++  C ++ +S   ++S S+D  V 
Sbjct: 99  SNLLVSASDDKTLKIWDV---SSGKCLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDESVR 154
Query: 299 LWDLRTAWPLSVIDSHKDKVLCADWWRGDSVISGGVDSKLC 339
           +WD++T   L  + +H D V    + R  S+I       LC
Sbjct: 155 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 195

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 66/264 (25%), Positives = 109/264 (41%), Gaps = 46/264 (17%)
Query: 60  LEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLW-KFDAEELVNHPKKIRSFKILRGH 118
           L GH  AVSSV    +       +A++S D+ +++W  +D           +  K + GH
Sbjct: 36  LAGHTKAVSSVKFSPNGEW----LASSSADKLIKIWGAYDG----------KFEKTISGH 81
Query: 119 KASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEA 178
           K  +  +A  +  N++ S S D T+ +W  +                          G+ 
Sbjct: 82  KLGISDVAWSSDSNLLVSASDDKTLKIWDVS-------------------------SGKC 116
Query: 179 ISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFC-GKALNCIDIGG 236
           + TL GH+  V    + PQ   I S S+D SVR WDV+ GK L  +      ++ +    
Sbjct: 117 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 176
Query: 237 EGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGK 296
           +GS LI +   D + RIWD         +      N  +S  K+     + +++A+ D  
Sbjct: 177 DGS-LIVSSSYDGLCRIWDTASGQCLKTLID--DDNPPVSFVKFSPNGKY-ILAATLDNT 232
Query: 297 VMLWDLRTAWPLSVIDSHKDKVLC 320
           + LWD      L     HK++  C
Sbjct: 233 LKLWDYSKGKCLKTYTGHKNEKYC 256

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 75/161 (46%), Gaps = 7/161 (4%)
Query: 181 TLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIG-GEG 238
           TL GHT+ VSSV + P  E + S+S D  ++ W    GK       G  L   D+     
Sbjct: 35  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-FEKTISGHKLGISDVAWSSD 93
Query: 239 SALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVM 298
           S L+ +   D  L+IWD     +   +     H++++  C ++ +S   ++S S+D  V 
Sbjct: 94  SNLLVSASDDKTLKIWDV---SSGKCLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDESVR 149
Query: 299 LWDLRTAWPLSVIDSHKDKVLCADWWRGDSVISGGVDSKLC 339
           +WD++T   L  + +H D V    + R  S+I       LC
Sbjct: 150 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 190

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 66/264 (25%), Positives = 109/264 (41%), Gaps = 46/264 (17%)
Query: 60  LEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLW-KFDAEELVNHPKKIRSFKILRGH 118
           L GH  AVSSV    +       +A++S D+ +++W  +D           +  K + GH
Sbjct: 25  LAGHTKAVSSVKFSPNGEW----LASSSADKLIKIWGAYDG----------KFEKTISGH 70
Query: 119 KASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEA 178
           K  +  +A  +  N++ S S D T+ +W  +                          G+ 
Sbjct: 71  KLGISDVAWSSDSNLLVSASDDKTLKIWDVS-------------------------SGKC 105
Query: 179 ISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFC-GKALNCIDIGG 236
           + TL GH+  V    + PQ   I S S+D SVR WDV+ GK L  +      ++ +    
Sbjct: 106 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 165
Query: 237 EGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGK 296
           +GS LI +   D + RIWD         +      N  +S  K+     + +++A+ D  
Sbjct: 166 DGS-LIVSSSYDGLCRIWDTASGQCLKTLID--DDNPPVSFVKFSPNGKY-ILAATLDNT 221
Query: 297 VMLWDLRTAWPLSVIDSHKDKVLC 320
           + LWD      L     HK++  C
Sbjct: 222 LKLWDYSKGKCLKTYTGHKNEKYC 245

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 75/161 (46%), Gaps = 7/161 (4%)
Query: 181 TLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIG-GEG 238
           TL GHT+ VSSV + P  E + S+S D  ++ W    GK       G  L   D+     
Sbjct: 24  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-FEKTISGHKLGISDVAWSSD 82
Query: 239 SALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVM 298
           S L+ +   D  L+IWD     +   +     H++++  C ++ +S   ++S S+D  V 
Sbjct: 83  SNLLVSASDDKTLKIWDV---SSGKCLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDESVR 138
Query: 299 LWDLRTAWPLSVIDSHKDKVLCADWWRGDSVISGGVDSKLC 339
           +WD++T   L  + +H D V    + R  S+I       LC
Sbjct: 139 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 179

>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 76/304 (25%), Positives = 125/304 (41%), Gaps = 67/304 (22%)
Query: 23  HDDWVS--AVDGSNPGFILTGCYDNLGRVWKAGG------VCTHILEGHCGAVSSVNIIK 74
           H+ WV+  A     P  +L+   D     WK  G      V     +GH   V    +  
Sbjct: 16  HNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTL-T 74
Query: 75  SDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMV 134
           +DG   ++   AS D+TLRLW     E         +++   GHK+ V S+  +   +M+
Sbjct: 75  ADGAYALS---ASWDKTLRLWDVATGE---------TYQRFVGHKSDVMSVDIDKKASMI 122
Query: 135 CSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSV-V 193
            SGS D TI +W                           ++G+ ++TL+GH   VS V V
Sbjct: 123 ISGSRDKTIKVW--------------------------TIKGQCLATLLGHNDWVSQVRV 156
Query: 194 WPQQE------TIYSASWDHSVRTWDVEMGKDLSDIFCG--KALNCIDIGGEGSALIAAG 245
            P ++      TI SA  D  V+ W++   +  +D F G    +N +    +G+ LIA+ 
Sbjct: 157 VPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEAD-FIGHNSNINTLTASPDGT-LIASA 214
Query: 246 GSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISA------SYDGKVML 299
           G D  + +W+         ++  S+ +   S     N+ W    +A      S D + ++
Sbjct: 215 GKDGEIMLWN---LAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLV 271
Query: 300 WDLR 303
            DLR
Sbjct: 272 DDLR 275

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 66/264 (25%), Positives = 109/264 (41%), Gaps = 46/264 (17%)
Query: 60  LEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLW-KFDAEELVNHPKKIRSFKILRGH 118
           L GH  AVSSV    +       +A++S D+ +++W  +D           +  K + GH
Sbjct: 25  LAGHTKAVSSVKFSPNGEW----LASSSADKLIKIWGAYDG----------KFEKTISGH 70
Query: 119 KASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEA 178
           K  +  +A  +  N++ S S D T+ +W  +                          G+ 
Sbjct: 71  KLGISDVAWSSDSNLLVSASDDKTLKIWDVS-------------------------SGKC 105
Query: 179 ISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFC-GKALNCIDIGG 236
           + TL GH+  V    + PQ   I S S+D SVR WDV+ GK L  +      ++ +    
Sbjct: 106 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 165
Query: 237 EGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGK 296
           +GS LI +   D + RIWD         +      N  +S  K+     + +++A+ D  
Sbjct: 166 DGS-LIVSSSYDGLCRIWDTASGQCLKTLID--DDNPPVSFVKFSPNGKY-ILAATLDNT 221
Query: 297 VMLWDLRTAWPLSVIDSHKDKVLC 320
           + LWD      L     HK++  C
Sbjct: 222 LKLWDYSKGKCLKTYTGHKNEKYC 245

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 75/161 (46%), Gaps = 7/161 (4%)
Query: 181 TLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIG-GEG 238
           TL GHT+ VSSV + P  E + S+S D  ++ W    GK       G  L   D+     
Sbjct: 24  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-FEKTISGHKLGISDVAWSSD 82
Query: 239 SALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVM 298
           S L+ +   D  L+IWD     +   +     H++++  C ++ +S   ++S S+D  V 
Sbjct: 83  SNLLVSASDDKTLKIWDV---SSGKCLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDESVR 138
Query: 299 LWDLRTAWPLSVIDSHKDKVLCADWWRGDSVISGGVDSKLC 339
           +WD++T   L  + +H D V    + R  S+I       LC
Sbjct: 139 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 179

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 66/264 (25%), Positives = 109/264 (41%), Gaps = 46/264 (17%)
Query: 60  LEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLW-KFDAEELVNHPKKIRSFKILRGH 118
           L GH  AVSSV    +       +A++S D+ +++W  +D           +  K + GH
Sbjct: 19  LAGHTKAVSSVKFSPNGEW----LASSSADKLIKIWGAYDG----------KFEKTISGH 64
Query: 119 KASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEA 178
           K  +  +A  +  N++ S S D T+ +W  +                          G+ 
Sbjct: 65  KLGISDVAWSSDSNLLVSASDDKTLKIWDVS-------------------------SGKC 99
Query: 179 ISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFC-GKALNCIDIGG 236
           + TL GH+  V    + PQ   I S S+D SVR WDV+ GK L  +      ++ +    
Sbjct: 100 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 159
Query: 237 EGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGK 296
           +GS LI +   D + RIWD         +      N  +S  K+     + +++A+ D  
Sbjct: 160 DGS-LIVSSSYDGLCRIWDTASGQCLKTLID--DDNPPVSFVKFSPNGKY-ILAATLDNT 215
Query: 297 VMLWDLRTAWPLSVIDSHKDKVLC 320
           + LWD      L     HK++  C
Sbjct: 216 LKLWDYSKGKCLKTYTGHKNEKYC 239

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 75/161 (46%), Gaps = 7/161 (4%)
Query: 181 TLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIG-GEG 238
           TL GHT+ VSSV + P  E + S+S D  ++ W    GK       G  L   D+     
Sbjct: 18  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-FEKTISGHKLGISDVAWSSD 76
Query: 239 SALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVM 298
           S L+ +   D  L+IWD     +   +     H++++  C ++ +S   ++S S+D  V 
Sbjct: 77  SNLLVSASDDKTLKIWDV---SSGKCLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDESVR 132
Query: 299 LWDLRTAWPLSVIDSHKDKVLCADWWRGDSVISGGVDSKLC 339
           +WD++T   L  + +H D V    + R  S+I       LC
Sbjct: 133 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 173

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 66/264 (25%), Positives = 109/264 (41%), Gaps = 46/264 (17%)
Query: 60  LEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLW-KFDAEELVNHPKKIRSFKILRGH 118
           L GH  AVSSV    +       +A++S D+ +++W  +D           +  K + GH
Sbjct: 20  LAGHTKAVSSVKFSPNGEW----LASSSADKLIKIWGAYDG----------KFEKTISGH 65
Query: 119 KASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEA 178
           K  +  +A  +  N++ S S D T+ +W  +                          G+ 
Sbjct: 66  KLGISDVAWSSDSNLLVSASDDKTLKIWDVS-------------------------SGKC 100
Query: 179 ISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFC-GKALNCIDIGG 236
           + TL GH+  V    + PQ   I S S+D SVR WDV+ GK L  +      ++ +    
Sbjct: 101 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 160
Query: 237 EGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGK 296
           +GS LI +   D + RIWD         +      N  +S  K+     + +++A+ D  
Sbjct: 161 DGS-LIVSSSYDGLCRIWDTASGQCLKTLID--DDNPPVSFVKFSPNGKY-ILAATLDNT 216
Query: 297 VMLWDLRTAWPLSVIDSHKDKVLC 320
           + LWD      L     HK++  C
Sbjct: 217 LKLWDYSKGKCLKTYTGHKNEKYC 240

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 75/161 (46%), Gaps = 7/161 (4%)
Query: 181 TLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIG-GEG 238
           TL GHT+ VSSV + P  E + S+S D  ++ W    GK       G  L   D+     
Sbjct: 19  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-FEKTISGHKLGISDVAWSSD 77
Query: 239 SALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVM 298
           S L+ +   D  L+IWD     +   +     H++++  C ++ +S   ++S S+D  V 
Sbjct: 78  SNLLVSASDDKTLKIWDV---SSGKCLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDESVR 133
Query: 299 LWDLRTAWPLSVIDSHKDKVLCADWWRGDSVISGGVDSKLC 339
           +WD++T   L  + +H D V    + R  S+I       LC
Sbjct: 134 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 174

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 66/264 (25%), Positives = 109/264 (41%), Gaps = 46/264 (17%)
Query: 60  LEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLW-KFDAEELVNHPKKIRSFKILRGH 118
           L GH  AVSSV    +       +A++S D+ +++W  +D           +  K + GH
Sbjct: 24  LAGHTKAVSSVKFSPNGEW----LASSSADKLIKIWGAYDG----------KFEKTISGH 69
Query: 119 KASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEA 178
           K  +  +A  +  N++ S S D T+ +W  +                          G+ 
Sbjct: 70  KLGISDVAWSSDSNLLVSASDDKTLKIWDVS-------------------------SGKC 104
Query: 179 ISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFC-GKALNCIDIGG 236
           + TL GH+  V    + PQ   I S S+D SVR WDV+ GK L  +      ++ +    
Sbjct: 105 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 164
Query: 237 EGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGK 296
           +GS LI +   D + RIWD         +      N  +S  K+     + +++A+ D  
Sbjct: 165 DGS-LIVSSSYDGLCRIWDTASGQCLKTLID--DDNPPVSFVKFSPNGKY-ILAATLDNT 220
Query: 297 VMLWDLRTAWPLSVIDSHKDKVLC 320
           + LWD      L     HK++  C
Sbjct: 221 LKLWDYSKGKCLKTYTGHKNEKYC 244

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 75/161 (46%), Gaps = 7/161 (4%)
Query: 181 TLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIG-GEG 238
           TL GHT+ VSSV + P  E + S+S D  ++ W    GK       G  L   D+     
Sbjct: 23  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-FEKTISGHKLGISDVAWSSD 81
Query: 239 SALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVM 298
           S L+ +   D  L+IWD     +   +     H++++  C ++ +S   ++S S+D  V 
Sbjct: 82  SNLLVSASDDKTLKIWDV---SSGKCLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDESVR 137
Query: 299 LWDLRTAWPLSVIDSHKDKVLCADWWRGDSVISGGVDSKLC 339
           +WD++T   L  + +H D V    + R  S+I       LC
Sbjct: 138 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 178

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 66/264 (25%), Positives = 109/264 (41%), Gaps = 46/264 (17%)
Query: 60  LEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLW-KFDAEELVNHPKKIRSFKILRGH 118
           L GH  AVSSV    +       +A++S D+ +++W  +D           +  K + GH
Sbjct: 19  LAGHTKAVSSVKFSPNGEW----LASSSADKLIKIWGAYDG----------KFEKTISGH 64
Query: 119 KASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEA 178
           K  +  +A  +  N++ S S D T+ +W  +                          G+ 
Sbjct: 65  KLGISDVAWSSDSNLLVSASDDKTLKIWDVS-------------------------SGKC 99
Query: 179 ISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFC-GKALNCIDIGG 236
           + TL GH+  V    + PQ   I S S+D SVR WDV+ GK L  +      ++ +    
Sbjct: 100 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 159
Query: 237 EGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGK 296
           +GS LI +   D + RIWD         +      N  +S  K+     + +++A+ D  
Sbjct: 160 DGS-LIVSSSYDGLCRIWDTASGQCLKTLID--DDNPPVSFVKFSPNGKY-ILAATLDNT 215
Query: 297 VMLWDLRTAWPLSVIDSHKDKVLC 320
           + LWD      L     HK++  C
Sbjct: 216 LKLWDYSKGKCLKTYTGHKNEKYC 239

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 75/161 (46%), Gaps = 7/161 (4%)
Query: 181 TLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIG-GEG 238
           TL GHT+ VSSV + P  E + S+S D  ++ W    GK       G  L   D+     
Sbjct: 18  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-FEKTISGHKLGISDVAWSSD 76
Query: 239 SALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVM 298
           S L+ +   D  L+IWD     +   +     H++++  C ++ +S   ++S S+D  V 
Sbjct: 77  SNLLVSASDDKTLKIWDV---SSGKCLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDESVR 132
Query: 299 LWDLRTAWPLSVIDSHKDKVLCADWWRGDSVISGGVDSKLC 339
           +WD++T   L  + +H D V    + R  S+I       LC
Sbjct: 133 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 173

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 66/264 (25%), Positives = 109/264 (41%), Gaps = 46/264 (17%)
Query: 60  LEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLW-KFDAEELVNHPKKIRSFKILRGH 118
           L GH  AVSSV    +       +A++S D+ +++W  +D           +  K + GH
Sbjct: 15  LAGHTKAVSSVKFSPNGEW----LASSSADKLIKIWGAYDG----------KFEKTISGH 60
Query: 119 KASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEA 178
           K  +  +A  +  N++ S S D T+ +W  +                          G+ 
Sbjct: 61  KLGISDVAWSSDSNLLVSASDDKTLKIWDVS-------------------------SGKC 95
Query: 179 ISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFC-GKALNCIDIGG 236
           + TL GH+  V    + PQ   I S S+D SVR WDV+ GK L  +      ++ +    
Sbjct: 96  LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 155
Query: 237 EGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGK 296
           +GS LI +   D + RIWD         +      N  +S  K+     + +++A+ D  
Sbjct: 156 DGS-LIVSSSYDGLCRIWDTASGQCLKTLID--DDNPPVSFVKFSPNGKY-ILAATLDNT 211
Query: 297 VMLWDLRTAWPLSVIDSHKDKVLC 320
           + LWD      L     HK++  C
Sbjct: 212 LKLWDYSKGKCLKTYTGHKNEKYC 235

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 59.3 bits (142), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 75/161 (46%), Gaps = 7/161 (4%)
Query: 181 TLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIG-GEG 238
           TL GHT+ VSSV + P  E + S+S D  ++ W    GK       G  L   D+     
Sbjct: 14  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-FEKTISGHKLGISDVAWSSD 72
Query: 239 SALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVM 298
           S L+ +   D  L+IWD     +   +     H++++  C ++ +S   ++S S+D  V 
Sbjct: 73  SNLLVSASDDKTLKIWDV---SSGKCLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDESVR 128
Query: 299 LWDLRTAWPLSVIDSHKDKVLCADWWRGDSVISGGVDSKLC 339
           +WD++T   L  + +H D V    + R  S+I       LC
Sbjct: 129 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 169

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 66/264 (25%), Positives = 109/264 (41%), Gaps = 46/264 (17%)
Query: 60  LEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLW-KFDAEELVNHPKKIRSFKILRGH 118
           L GH  AVSSV    +       +A++S D+ +++W  +D           +  K + GH
Sbjct: 18  LAGHTKAVSSVKFSPNGEW----LASSSADKLIKIWGAYDG----------KFEKTISGH 63
Query: 119 KASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEA 178
           K  +  +A  +  N++ S S D T+ +W  +                          G+ 
Sbjct: 64  KLGISDVAWSSDSNLLVSASDDKTLKIWDVS-------------------------SGKC 98
Query: 179 ISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFC-GKALNCIDIGG 236
           + TL GH+  V    + PQ   I S S+D SVR WDV+ GK L  +      ++ +    
Sbjct: 99  LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 158
Query: 237 EGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGK 296
           +GS LI +   D + RIWD         +      N  +S  K+     + +++A+ D  
Sbjct: 159 DGS-LIVSSSYDGLCRIWDTASGQCLKTLID--DDNPPVSFVKFSPNGKY-ILAATLDNT 214
Query: 297 VMLWDLRTAWPLSVIDSHKDKVLC 320
           + LWD      L     HK++  C
Sbjct: 215 LKLWDYSKGKCLKTYTGHKNEKYC 238

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 59.3 bits (142), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 75/161 (46%), Gaps = 7/161 (4%)
Query: 181 TLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIG-GEG 238
           TL GHT+ VSSV + P  E + S+S D  ++ W    GK       G  L   D+     
Sbjct: 17  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-FEKTISGHKLGISDVAWSSD 75
Query: 239 SALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVM 298
           S L+ +   D  L+IWD     +   +     H++++  C ++ +S   ++S S+D  V 
Sbjct: 76  SNLLVSASDDKTLKIWDVS---SGKCLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDESVR 131
Query: 299 LWDLRTAWPLSVIDSHKDKVLCADWWRGDSVISGGVDSKLC 339
           +WD++T   L  + +H D V    + R  S+I       LC
Sbjct: 132 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 172

>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 76/183 (41%), Gaps = 13/183 (7%)
Query: 171 EPQLEGEAISTLVGHTQCVSSVVWPQQETIY--SASWDHSVRTWDVEMGK------DLSD 222
           EP  E +    L GH +    + W      Y  SAS DH++  WD+          D  +
Sbjct: 168 EPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKN 227
Query: 223 IFCGKALNCIDIGGE--GSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKW 280
           IF G      D+       +L  +   D  L IWD R   TS P     +H + ++   +
Sbjct: 228 IFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSF 287
Query: 281 HNKSWFHLISASYDGKVMLWDLRT-AWPLSVIDSHKDKVLCADWWRGDSVI--SGGVDSK 337
           +  S F L + S D  V LWDLR     L   +SHKD++    W   +  I  S G D +
Sbjct: 288 NPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRR 347
Query: 338 LCV 340
           L V
Sbjct: 348 LHV 350

>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 76/183 (41%), Gaps = 13/183 (7%)
Query: 171 EPQLEGEAISTLVGHTQCVSSVVWPQQETIY--SASWDHSVRTWDVEMGK------DLSD 222
           EP  E +    L GH +    + W      Y  SAS DH++  WD+          D  +
Sbjct: 166 EPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKN 225
Query: 223 IFCGKALNCIDIGGE--GSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKW 280
           IF G      D+       +L  +   D  L IWD R   TS P     +H + ++   +
Sbjct: 226 IFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSF 285
Query: 281 HNKSWFHLISASYDGKVMLWDLRT-AWPLSVIDSHKDKVLCADWWRGDSVI--SGGVDSK 337
           +  S F L + S D  V LWDLR     L   +SHKD++    W   +  I  S G D +
Sbjct: 286 NPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRR 345
Query: 338 LCV 340
           L V
Sbjct: 346 LHV 348

>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 76/183 (41%), Gaps = 13/183 (7%)
Query: 171 EPQLEGEAISTLVGHTQCVSSVVWPQQETIY--SASWDHSVRTWDVEMGK------DLSD 222
           EP  E +    L GH +    + W      Y  SAS DH++  WD+          D  +
Sbjct: 170 EPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKN 229
Query: 223 IFCGKALNCIDIGGE--GSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKW 280
           IF G      D+       +L  +   D  L IWD R   TS P     +H + ++   +
Sbjct: 230 IFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSF 289
Query: 281 HNKSWFHLISASYDGKVMLWDLRT-AWPLSVIDSHKDKVLCADWWRGDSVI--SGGVDSK 337
           +  S F L + S D  V LWDLR     L   +SHKD++    W   +  I  S G D +
Sbjct: 290 NPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRR 349
Query: 338 LCV 340
           L V
Sbjct: 350 LHV 352

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 66/264 (25%), Positives = 108/264 (40%), Gaps = 46/264 (17%)
Query: 60  LEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLW-KFDAEELVNHPKKIRSFKILRGH 118
           L GH  AVSSV    +       +A +S D+ +++W  +D           +  K + GH
Sbjct: 22  LAGHTKAVSSVKFSPNGEW----LAASSADKLIKIWGAYDG----------KFEKTISGH 67
Query: 119 KASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEA 178
           K  +  +A  +  N++ S S D T+ +W  +                          G+ 
Sbjct: 68  KLGISDVAWSSDSNLLVSASDDKTLKIWDVS-------------------------SGKC 102
Query: 179 ISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFC-GKALNCIDIGG 236
           + TL GH+  V    + PQ   I S S+D SVR WDV+ GK L  +      ++ +    
Sbjct: 103 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 162
Query: 237 EGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGK 296
           +GS LI +   D + RIWD         +      N  +S  K+     + +++A+ D  
Sbjct: 163 DGS-LIVSSSYDGLCRIWDTASGQCLKTLID--DDNPPVSFVKFSPNGKY-ILAATLDNT 218
Query: 297 VMLWDLRTAWPLSVIDSHKDKVLC 320
           + LWD      L     HK++  C
Sbjct: 219 LKLWDYSKGKCLKTYTGHKNEKYC 242

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 58.5 bits (140), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 75/161 (46%), Gaps = 7/161 (4%)
Query: 181 TLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIG-GEG 238
           TL GHT+ VSSV + P  E + ++S D  ++ W    GK       G  L   D+     
Sbjct: 21  TLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGK-FEKTISGHKLGISDVAWSSD 79
Query: 239 SALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVM 298
           S L+ +   D  L+IWD     +   +     H++++  C ++ +S   ++S S+D  V 
Sbjct: 80  SNLLVSASDDKTLKIWDVS---SGKCLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDESVR 135
Query: 299 LWDLRTAWPLSVIDSHKDKVLCADWWRGDSVISGGVDSKLC 339
           +WD++T   L  + +H D V    + R  S+I       LC
Sbjct: 136 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 176

>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 48/152 (31%), Positives = 67/152 (44%), Gaps = 11/152 (7%)
Query: 200 IYSASWDHSVRTWDVEMGK------DLSDIFCGKALNCIDIGGE--GSALIAAGGSDPIL 251
           + SAS DH+V  WD+  G       D   IF G +    D+       +L  +   D  L
Sbjct: 195 LLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKL 254
Query: 252 RIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRT-AWPLSV 310
            IWD R   TS P     +H + ++   ++  S F L + S D  V LWDLR     L  
Sbjct: 255 MIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHT 314
Query: 311 IDSHKDKVLCADWWRGDSVI--SGGVDSKLCV 340
            +SHKD++    W   +  I  S G D +L V
Sbjct: 315 FESHKDEIFQVHWSPHNETILASSGTDRRLNV 346

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 62.4 bits (150), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 70/296 (23%), Positives = 114/296 (38%), Gaps = 67/296 (22%)
Query: 58  HILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRG 117
           + L GH   V+ V         +  + +AS+D T+++W ++  +           + L+G
Sbjct: 102 YALSGHRSPVTRVIFHPV----FSVMVSASEDATIKVWDYETGDFE---------RTLKG 148
Query: 118 HKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGE 177
           H  SV  I+ + SG ++ S S D TI LW     D  G                     E
Sbjct: 149 HTDSVQDISFDHSGKLLASCSADMTIKLW-----DFQG--------------------FE 183
Query: 178 AISTLVGHTQCVSSV-VWPQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGG 236
            I T+ GH   VSSV + P  + I SAS D +++ W+V+ G  +      +    +    
Sbjct: 184 CIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPN 243
Query: 237 EGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWF---------- 286
           +   LIA+  +D  +R+W      T     +   H   +    W  +S +          
Sbjct: 244 QDGTLIASCSNDQTVRVW---VVATKECKAELREHRHVVECISWAPESSYSSISEATGSE 300
Query: 287 ---------HLISASYDGKVMLWDLRTAWPLSVIDSHKDKVLCADWWRGDSVISGG 333
                     L+S S D  + +WD+ T   L  +  H       +W RG    SGG
Sbjct: 301 TKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHD------NWVRGVLFHSGG 350

>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 62.4 bits (150), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 48/152 (31%), Positives = 67/152 (44%), Gaps = 11/152 (7%)
Query: 200 IYSASWDHSVRTWDVEMGK------DLSDIFCGKALNCIDIGGE--GSALIAAGGSDPIL 251
           + SAS DH+V  WD+  G       D   IF G +    D+       +L  +   D  L
Sbjct: 195 LLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKL 254
Query: 252 RIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRT-AWPLSV 310
            IWD R   TS P     +H + ++   ++  S F L + S D  V LWDLR     L  
Sbjct: 255 XIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHT 314
Query: 311 IDSHKDKVLCADWWRGDSVI--SGGVDSKLCV 340
            +SHKD++    W   +  I  S G D +L V
Sbjct: 315 FESHKDEIFQVHWSPHNETILASSGTDRRLNV 346

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 60.8 bits (146), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 65/264 (24%), Positives = 108/264 (40%), Gaps = 46/264 (17%)
Query: 60  LEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLW-KFDAEELVNHPKKIRSFKILRGH 118
           L GH  AVSSV    +       +A++S D+ +++W  +D           +  K + GH
Sbjct: 22  LAGHTKAVSSVKFSPNGEW----LASSSADKLIKIWGAYDG----------KFEKTISGH 67
Query: 119 KASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEA 178
           K  +  +A  +  N++ S S D T+ +W  +                          G+ 
Sbjct: 68  KLGISDVAWSSDSNLLVSASDDKTLKIWDVS-------------------------SGKC 102
Query: 179 ISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFC-GKALNCIDIGG 236
           + TL GH+  V    + PQ   I S S+D SVR WDV+ G  L  +      ++ +    
Sbjct: 103 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNR 162
Query: 237 EGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGK 296
           +GS LI +   D + RIWD         +      N  +S  K+     + +++A+ D  
Sbjct: 163 DGS-LIVSSSYDGLCRIWDTASGQCLKTLID--DDNPPVSFVKFSPNGKY-ILAATLDNT 218
Query: 297 VMLWDLRTAWPLSVIDSHKDKVLC 320
           + LWD      L     HK++  C
Sbjct: 219 LKLWDYSKGKCLKTYTGHKNEKYC 242

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 75/161 (46%), Gaps = 7/161 (4%)
Query: 181 TLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIG-GEG 238
           TL GHT+ VSSV + P  E + S+S D  ++ W    GK       G  L   D+     
Sbjct: 21  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-FEKTISGHKLGISDVAWSSD 79
Query: 239 SALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVM 298
           S L+ +   D  L+IWD     +   +     H++++  C ++ +S   ++S S+D  V 
Sbjct: 80  SNLLVSASDDKTLKIWDV---SSGKCLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDESVR 135
Query: 299 LWDLRTAWPLSVIDSHKDKVLCADWWRGDSVISGGVDSKLC 339
           +WD++T   L  + +H D V    + R  S+I       LC
Sbjct: 136 IWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 176

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 60.8 bits (146), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 65/264 (24%), Positives = 108/264 (40%), Gaps = 46/264 (17%)
Query: 60  LEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLW-KFDAEELVNHPKKIRSFKILRGH 118
           L GH  AVSSV    +       +A++S D+ +++W  +D           +  K + GH
Sbjct: 22  LAGHTKAVSSVKFSPNGEW----LASSSADKLIKIWGAYDG----------KFEKTISGH 67
Query: 119 KASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEA 178
           K  +  +A  +  N++ S S D T+ +W  +                          G+ 
Sbjct: 68  KLGISDVAWSSDSNLLVSASDDKTLKIWDVS-------------------------SGKC 102
Query: 179 ISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFC-GKALNCIDIGG 236
           + TL GH+  V    + PQ   I S S+D SVR WDV+ G  L  +      ++ +    
Sbjct: 103 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNR 162
Query: 237 EGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGK 296
           +GS LI +   D + RIWD         +      N  +S  K+     + +++A+ D  
Sbjct: 163 DGS-LIVSSSYDGLCRIWDTASGQCLKTLID--DDNPPVSFVKFSPNGKY-ILAATLDND 218
Query: 297 VMLWDLRTAWPLSVIDSHKDKVLC 320
           + LWD      L     HK++  C
Sbjct: 219 LKLWDYSKGKCLKTYTGHKNEKYC 242

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 75/161 (46%), Gaps = 7/161 (4%)
Query: 181 TLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIG-GEG 238
           TL GHT+ VSSV + P  E + S+S D  ++ W    GK       G  L   D+     
Sbjct: 21  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-FEKTISGHKLGISDVAWSSD 79
Query: 239 SALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVM 298
           S L+ +   D  L+IWD     +   +     H++++  C ++ +S   ++S S+D  V 
Sbjct: 80  SNLLVSASDDKTLKIWDV---SSGKCLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDESVR 135
Query: 299 LWDLRTAWPLSVIDSHKDKVLCADWWRGDSVISGGVDSKLC 339
           +WD++T   L  + +H D V    + R  S+I       LC
Sbjct: 136 IWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 176

>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 75/304 (24%), Positives = 123/304 (40%), Gaps = 67/304 (22%)
Query: 23  HDDWVS--AVDGSNPGFILTGCYDNLGRVWKAGG------VCTHILEGHCGAVSSVNIIK 74
           H+ WV+  A     P  +L+   D     WK  G      V     +GH   V    +  
Sbjct: 16  HNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLT- 74
Query: 75  SDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMV 134
           +DG   ++   AS D+TLRLW     E         +++   GHK+ V S+  +   + +
Sbjct: 75  ADGAYALS---ASWDKTLRLWDVATGE---------TYQRFVGHKSDVXSVDIDKKASXI 122
Query: 135 CSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSV-V 193
            SGS D TI +W                           ++G+ ++TL+GH   VS V V
Sbjct: 123 ISGSRDKTIKVW--------------------------TIKGQCLATLLGHNDWVSQVRV 156
Query: 194 WPQQE------TIYSASWDHSVRTWDVEMGKDLSDIFCG--KALNCIDIGGEGSALIAAG 245
            P ++      TI SA  D  V+ W++   +  +D F G    +N +    +G+ LIA+ 
Sbjct: 157 VPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEAD-FIGHNSNINTLTASPDGT-LIASA 214
Query: 246 GSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISA------SYDGKVML 299
           G D  + +W+          +  S+ +   S     N+ W    +A      S D + ++
Sbjct: 215 GKDGEIXLWN---LAAKKAXYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLV 271
Query: 300 WDLR 303
            DLR
Sbjct: 272 DDLR 275

>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/152 (31%), Positives = 68/152 (44%), Gaps = 11/152 (7%)
Query: 200 IYSASWDHSVRTWDV----EMGK--DLSDIFCGKALNCIDIGGE--GSALIAAGGSDPIL 251
           + SAS DH++  WD+    + GK  D   IF G      D+       +L  +   D  L
Sbjct: 193 LLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKL 252
Query: 252 RIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRT-AWPLSV 310
            IWD R   TS P     +H + ++   ++  S F L + S D  V LWDLR     L  
Sbjct: 253 MIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHS 312
Query: 311 IDSHKDKVLCADWWRGDSVI--SGGVDSKLCV 340
            +SHKD++    W   +  I  S G D +L V
Sbjct: 313 FESHKDEIFQVQWSPHNETILASSGTDRRLNV 344

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 59.3 bits (142), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 64/248 (25%), Positives = 105/248 (42%), Gaps = 32/248 (12%)
Query: 60  LEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHK 119
           L GH G V+S+   ++       V+T S+D+TL  W  + +   +        + L GH 
Sbjct: 9   LTGHRGWVTSLACPQTPETATKVVST-SRDKTLLSWGPNPDRHSSECSYGLPDRRLEGHS 67
Query: 120 ASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDA-------AGNQVSIKKRKGNNQVEEP 172
           A V  +A   +GN   S SWD ++ LW   +            + +S+     N Q+   
Sbjct: 68  AFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSG 127
Query: 173 ---------QLEGEAISTLV--GHTQCVSSVVWP---QQETIYSASWDHSVRTWDVEMGK 218
                     ++GE + TL    HT  VS V +        I S  WD+ V+ WD+  G+
Sbjct: 128 GRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGR 187
Query: 219 DLSDIFC-GKALNCIDIGGEGSALIAAGGSDPILRIWDPRK------PGTSAPVFQ--FS 269
            ++D+      +  + +  +GS L A+   D + R+WD  K          AP+ Q  FS
Sbjct: 188 LVTDLKGHTNYVTSVTVSPDGS-LCASSDKDGVARLWDLTKGEALSEMAAGAPINQICFS 246
Query: 270 SHNSWISA 277
            +  W+ A
Sbjct: 247 PNRYWMCA 254

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 66/294 (22%), Positives = 113/294 (38%), Gaps = 59/294 (20%)
Query: 36  GFILTGCYDNLGRVWKAGG---VCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTL 92
            ++ +  +D    +WK       C   LEGH   V SV    S  L    +AT S+D+++
Sbjct: 74  NYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNL----LATCSRDKSV 129
Query: 93  RLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSD 152
            +W+ D E+      +     +L  H   V  +    S  ++ S S+D T+ L+R  + D
Sbjct: 130 WVWEVDEED------EYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDD 183
Query: 153 AAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRT 211
                                      +TL GH   V S+ + P  + + S S D +VR 
Sbjct: 184 WV-----------------------CCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRI 220
Query: 212 WDVEMGKDLSDIFCG---KALNCI------------DIG-GEGSALIAAGGSDPILRIW- 254
           W   +  +   + C     +  CI            DI   + +  +A    D  +R++ 
Sbjct: 221 WRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQ 280
Query: 255 -----DPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLR 303
                DP++P  S       +H+  ++   W+ K    L S S DG+V  W  +
Sbjct: 281 EDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQ 334

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 55.5 bits (132), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 59/271 (21%), Positives = 107/271 (39%), Gaps = 66/271 (24%)
Query: 83  VATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCT 142
           +AT ++D+ +R+W  +  ++V          IL+GH+  ++S+    SG+ + SGS D T
Sbjct: 138 LATGAEDRLIRIWDIENRKIV---------MILQGHEQDIYSLDYFPSGDKLVSGSGDRT 188
Query: 143 ISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWP-QQETIY 201
           + +W     D    Q S+                    TL       +  V P   + I 
Sbjct: 189 VRIW-----DLRTGQCSL--------------------TLSIEDGVTTVAVSPGDGKYIA 223
Query: 202 SASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEG-------------SALIAAGGSD 248
           + S D +VR WD E G      F  + L+  +  G G                + +G  D
Sbjct: 224 AGSLDRAVRVWDSETG------FLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLD 277
Query: 249 PILRIW---------DPRKPGTSAPVFQFSSHNSWI-SACKWHNKSWFHLISASYDGKVM 298
             +++W         D + P +      +  H  ++ S     N  +  ++S S D  V+
Sbjct: 278 RSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEY--ILSGSKDRGVL 335
Query: 299 LWDLRTAWPLSVIDSHKDKVLCADWWRGDSV 329
            WD ++  PL ++  H++ V+      G S+
Sbjct: 336 FWDKKSGNPLLMLQGHRNSVISVAVANGSSL 366

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 67/151 (44%), Gaps = 16/151 (10%)
Query: 195 PQQETIYSASWDHSVRTWDVEMGKDLSDIFCG--KALNCIDIGGEGSALIAAGGSDPILR 252
           P  + + + + D  +R WD+E  K +  I  G  + +  +D    G  L++  G D  +R
Sbjct: 133 PDGKFLATGAEDRLIRIWDIENRK-IVMILQGHEQDIYSLDYFPSGDKLVSGSG-DRTVR 190
Query: 253 IWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVID 312
           IWD R  G  +         + ++      K   ++ + S D  V +WD  T + +  +D
Sbjct: 191 IWDLRT-GQCSLTLSIEDGVTTVAVSPGDGK---YIAAGSLDRAVRVWDSETGFLVERLD 246
Query: 313 S-------HKDKVLCADWWR-GDSVISGGVD 335
           S       HKD V    + R G SV+SG +D
Sbjct: 247 SENESGTGHKDSVYSVVFTRDGQSVVSGSLD 277

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 54.7 bits (130), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 62/251 (24%), Positives = 108/251 (43%), Gaps = 45/251 (17%)
Query: 83  VATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCT 142
           + +AS+D+++ LWK   ++      + R    L GH   V  +   + G    SGSWD  
Sbjct: 398 IVSASRDKSIILWKLTKDDKAYGVAQRR----LTGHSHFVEDVVLSSDGQFALSGSWDGE 453
Query: 143 ISLWRTNDSDAAG-----------NQVSIKKRKGNNQVEEPQLE---------GEAISTL 182
           + LW      AAG           + +S+     N Q+     +         GE   T+
Sbjct: 454 LRLWDL----AAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTI 509
Query: 183 V----GHTQCVSSVVWPQ---QETIYSASWDHSVRTWDVEMGKDLSDIFCGKA--LNCID 233
                GH   VS V +     Q TI SASWD +V+ W++   K L     G    ++ + 
Sbjct: 510 SEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCK-LRSTLAGHTGYVSTVA 568
Query: 234 IGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASY 293
           +  +GS L A+GG D ++ +WD  +      ++   +++   + C   N+ W   + A+ 
Sbjct: 569 VSPDGS-LCASGGKDGVVLLWDLAE---GKKLYSLEANSVIHALCFSPNRYW---LCAAT 621
Query: 294 DGKVMLWDLRT 304
           +  + +WDL +
Sbjct: 622 EHGIKIWDLES 632

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 70/272 (25%), Positives = 106/272 (38%), Gaps = 44/272 (16%)
Query: 55  VCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKI 114
           VC   L+GH G V S++           + +AS+D  L +W     +      K  + K+
Sbjct: 57  VCCRTLQGHSGKVYSLDWTPEKNW----IVSASQDGRLIVWNALTSQ------KTHAIKL 106
Query: 115 LRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQL 174
              H   V   A   +G  V  G  D   S++         N  S   R GN  V     
Sbjct: 107 ---HCPWVMECAFAPNGQSVACGGLDSACSIF---------NLSSQADRDGNMPVSR--- 151
Query: 175 EGEAISTLVGHTQCVSSVVW-PQQET-IYSASWDHSVRTWDVEMGKDLSDIFCGKA---- 228
                  L GH    SS  + P QET + + S D +   WDV  G+ +S IF  +     
Sbjct: 152 ------VLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRIS-IFGSEFPSGH 204
Query: 229 ---LNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSW 285
              +  + I    + +  +G  D  +R+WD R   TS  V  +  H   I++ K+     
Sbjct: 205 TADVLSLSINSLNANMFISGSCDTTVRLWDLRI--TSRAVRTYHGHEGDINSVKFFPDGQ 262
Query: 286 FHLISASYDGKVMLWDLRTAWPLSVIDSHKDK 317
               + S DG   L+D+RT   L V +   D+
Sbjct: 263 -RFGTGSDDGTCRLFDMRTGHQLQVYNREPDR 293

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 78/309 (25%), Positives = 120/309 (38%), Gaps = 59/309 (19%)
Query: 23  HDDWVS--AVDGSNPGFILTGCYDNLGRVWKAG------GVCTHILEGHCGAVSSVNIIK 74
           H+ WV+  A     P  IL+   D    +WK        G+    L GH   VS V +I 
Sbjct: 37  HNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDV-VIS 95
Query: 75  SDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMV 134
           SDG   ++    S D TLRLW              R F    GH   V S+A  +    +
Sbjct: 96  SDGQFALS---GSWDGTLRLWDLTTGTTT------RRFV---GHTKDVLSVAFSSDNRQI 143
Query: 135 CSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW 194
            SGS D TI LW         N + + K    ++                H++ VS V +
Sbjct: 144 VSGSRDKTIKLW---------NTLGVCKYTVQDE---------------SHSEWVSCVRF 179
Query: 195 PQQET---IYSASWDHSVRTWDVEMGK-DLSDIFCGKALNCIDIGGEGSALIAAGGSDPI 250
               +   I S  WD  V+ W++   K   + I     LN + +  +GS L A+GG D  
Sbjct: 180 SPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGS-LCASGGKDGQ 238
Query: 251 LRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSV 310
             +WD  +      ++     +   + C   N+ W   + A+    + +WDL       +
Sbjct: 239 AMLWDLNE---GKHLYTLDGGDIINALCFSPNRYW---LCAATGPSIKIWDLEGK---II 289
Query: 311 IDSHKDKVL 319
           +D  K +V+
Sbjct: 290 VDELKQEVI 298

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/193 (26%), Positives = 82/193 (42%), Gaps = 29/193 (15%)
Query: 115 LRGHKASVHSIAAETS-GNMVCSGSWDCTISLWR-TNDSDAAGNQVSIKKRKGNNQVEEP 172
           L+GH   V  IA      +M+ S S D TI +W+ T D    G    I +R         
Sbjct: 34  LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYG----IPQR--------- 80
Query: 173 QLEGEAISTLVGHTQCVSSVVWPQQ-ETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNC 231
                    L GH+  VS VV     +   S SWD ++R WD+  G   +  F G   + 
Sbjct: 81  --------ALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTT-TRRFVGHTKDV 131
Query: 232 IDIG-GEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWH-NKSWFHLI 289
           + +     +  I +G  D  +++W+    G      Q  SH+ W+S  ++  N S   ++
Sbjct: 132 LSVAFSSDNRQIVSGSRDKTIKLWNTL--GVCKYTVQDESHSEWVSCVRFSPNSSNPIIV 189
Query: 290 SASYDGKVMLWDL 302
           S  +D  V +W+L
Sbjct: 190 SCGWDKLVKVWNL 202

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 78/309 (25%), Positives = 120/309 (38%), Gaps = 59/309 (19%)
Query: 23  HDDWVS--AVDGSNPGFILTGCYDNLGRVWKAG------GVCTHILEGHCGAVSSVNIIK 74
           H+ WV+  A     P  IL+   D    +WK        G+    L GH   VS V +I 
Sbjct: 14  HNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDV-VIS 72
Query: 75  SDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMV 134
           SDG   ++    S D TLRLW              R F    GH   V S+A  +    +
Sbjct: 73  SDGQFALS---GSWDGTLRLWDLTTGTTT------RRFV---GHTKDVLSVAFSSDNRQI 120
Query: 135 CSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW 194
            SGS D TI LW         N + + K    ++                H++ VS V +
Sbjct: 121 VSGSRDKTIKLW---------NTLGVCKYTVQDE---------------SHSEWVSCVRF 156
Query: 195 PQQET---IYSASWDHSVRTWDVEMGK-DLSDIFCGKALNCIDIGGEGSALIAAGGSDPI 250
               +   I S  WD  V+ W++   K   + I     LN + +  +GS L A+GG D  
Sbjct: 157 SPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGS-LCASGGKDGQ 215
Query: 251 LRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSV 310
             +WD  +      ++     +   + C   N+ W   + A+    + +WDL       +
Sbjct: 216 AMLWDLNE---GKHLYTLDGGDIINALCFSPNRYW---LCAATGPSIKIWDLEGK---II 266
Query: 311 IDSHKDKVL 319
           +D  K +V+
Sbjct: 267 VDELKQEVI 275

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/192 (25%), Positives = 82/192 (42%), Gaps = 27/192 (14%)
Query: 115 LRGHKASVHSIAAETS-GNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQ 173
           L+GH   V  IA      +M+ S S D TI +W+            + + + N  + +  
Sbjct: 11  LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWK------------LTRDETNYGIPQRA 58
Query: 174 LEGEAISTLVGHTQCVSSVVWPQQ-ETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCI 232
           L G        H+  VS VV     +   S SWD ++R WD+  G   +  F G   + +
Sbjct: 59  LRG--------HSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTT-TRRFVGHTKDVL 109
Query: 233 DIG-GEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWH-NKSWFHLIS 290
            +     +  I +G  D  +++W+    G      Q  SH+ W+S  ++  N S   ++S
Sbjct: 110 SVAFSSDNRQIVSGSRDKTIKLWNTL--GVCKYTVQDESHSEWVSCVRFSPNSSNPIIVS 167
Query: 291 ASYDGKVMLWDL 302
             +D  V +W+L
Sbjct: 168 CGWDKLVKVWNL 179

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 48.1 bits (113), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 73/169 (43%), Gaps = 12/169 (7%)
Query: 181 TLVGHTQCVSSVVWPQ-QETIYSASWDHSVRTWD--VEMGKDLSDIFCGKALNCIDIGGE 237
           TL GH   V  + W + +  I S+S D  V  WD      +    + C   + C      
Sbjct: 59  TLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACA-YAPS 117
Query: 238 GSALIAAGGSDPILRIWD---PRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYD 294
           G A IA GG D    ++     +    +A     + H +++SAC + N S   +++AS D
Sbjct: 118 GCA-IACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTN-SDMQILTASGD 175
Query: 295 GKVMLWDLRTAWPLSVIDSHKDKVLCADWW---RGDSVISGGVDSKLCV 340
           G   LWD+ +   L     H   VLC D      G++ +SGG D K  V
Sbjct: 176 GTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMV 224

>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 62/254 (24%), Positives = 105/254 (41%), Gaps = 45/254 (17%)
Query: 23  HDDWVSAVDGSNPGFILTGC-YDNLGRVWKAGGV-----CTHILEGHCGAVSSVNIIKSD 76
           H++ V  V  SN G+ L  C  D    +W+         C  +L+ H   V  V    S+
Sbjct: 106 HENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSE 165
Query: 77  GLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNM--V 134
            L    +A++S D T+R+WK       ++        +L GH+ +V S   + +  +  +
Sbjct: 166 AL----LASSSYDDTVRIWK-------DYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRL 214
Query: 135 CSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW 194
           CSGS D T+ +W               K  G+++ ++ +   EAI   V H + V +V W
Sbjct: 215 CSGSDDSTVRVW---------------KYMGDDEDDQQEWVCEAILPDV-HKRQVYNVAW 258
Query: 195 PQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKAL-------NCID-IGGEGSALIAAGG 246
                I S   D  +  ++   G+    +F  +AL       N +  +   G  ++A GG
Sbjct: 259 GFNGLIASVGADGVLAVYEEVDGE--WKVFAKRALCHGVYEINVVKWLELNGKTILATGG 316
Query: 247 SDPILRIWDPRKPG 260
            D I+  W   K  
Sbjct: 317 DDGIVNFWSLEKAA 330

>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1 Length = 402

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 67/155 (43%), Gaps = 25/155 (16%)
Query: 110 RSFKILRGHKASVHSIA-AETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQ 168
           ++  ++ GH A V  IA    + N++ SGS DCT+ +W   D    G  + ++       
Sbjct: 72  KNVPLVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPD---GGLVLPLR------- 121
Query: 169 VEEPQLEGEAISTLVGHTQCVSSVVW--PQQETIYSASWDHSVRTWDVEMGK---DLSDI 223
                   E + TL GHT+ V  V W    Q  + SA  D+ +  WDV  G     L   
Sbjct: 122 --------EPVITLEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPD 173
Query: 224 FCGKALNCIDIGGEGSALIAAGGSDPILRIWDPRK 258
                +  +D   +G ALI     D  +R+ +PRK
Sbjct: 174 VHPDTIYSVDWSRDG-ALICTSCRDKRVRVIEPRK 207

>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1 Length = 402

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 6/96 (6%)
Query: 241 LIAAGGSDPILRIWDPRKPGT----SAPVFQFSSHNSWISACKWHNKSWFHLISASYDGK 296
           +IA+G  D  + +W+    G       PV     H   +    WH  +   L+SA  D  
Sbjct: 96  VIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGXDNV 155
Query: 297 VMLWDLRTAWPLSVI--DSHKDKVLCADWWRGDSVI 330
           +++WD+ T   +  +  D H D +   DW R  ++I
Sbjct: 156 ILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALI 191

>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The Eed-Ezh2 Polycomb Complex Length = 402

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 57/102 (55%), Gaps = 7/102 (6%)
Query: 241 LIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLW 300
           L+A  GS  I+RI +P    T   +  +  H + I+  K+H +    L+S S D  + LW
Sbjct: 123 LLAVAGSRGIIRIINP---ITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLW 179
Query: 301 DLRTAWPLSV---IDSHKDKVLCADW-WRGDSVISGGVDSKL 338
           +++T   +++   ++ H+D+VL AD+   G+ ++S G+D  L
Sbjct: 180 NIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSL 221

>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form Length = 366

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 57/102 (55%), Gaps = 7/102 (6%)
Query: 241 LIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLW 300
           L+A  GS  I+RI +P    T   +  +  H + I+  K+H +    L+S S D  + LW
Sbjct: 87  LLAVAGSRGIIRIINP---ITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLW 143
Query: 301 DLRTAWPLSV---IDSHKDKVLCADW-WRGDSVISGGVDSKL 338
           +++T   +++   ++ H+D+VL AD+   G+ ++S G+D  L
Sbjct: 144 NIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSL 185

>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed Length = 361

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 57/102 (55%), Gaps = 7/102 (6%)
Query: 241 LIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLW 300
           L+A  GS  I+RI +P    T   +  +  H + I+  K+H +    L+S S D  + LW
Sbjct: 82  LLAVAGSRGIIRIINP---ITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLW 138
Query: 301 DLRTAWPLSV---IDSHKDKVLCADW-WRGDSVISGGVDSKL 338
           +++T   +++   ++ H+D+VL AD+   G+ ++S G+D  L
Sbjct: 139 NIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSL 180

>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated Histone H1k26 Peptide Length = 365

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 57/102 (55%), Gaps = 7/102 (6%)
Query: 241 LIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLW 300
           L+A  GS  I+RI +P    T   +  +  H + I+  K+H +    L+S S D  + LW
Sbjct: 86  LLAVAGSRGIIRIINP---ITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLW 142
Query: 301 DLRTAWPLSV---IDSHKDKVLCADW-WRGDSVISGGVDSKL 338
           +++T   +++   ++ H+D+VL AD+   G+ ++S G+D  L
Sbjct: 143 NIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSL 184

>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated Histone H3k27 Peptide Length = 365

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 57/102 (55%), Gaps = 7/102 (6%)
Query: 241 LIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLW 300
           L+A  GS  I+RI +P    T   +  +  H + I+  K+H +    L+S S D  + LW
Sbjct: 86  LLAVAGSRGIIRIINP---ITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLW 142
Query: 301 DLRTAWPLSV---IDSHKDKVLCADW-WRGDSVISGGVDSKL 338
           +++T   +++   ++ H+D+VL AD+   G+ ++S G+D  L
Sbjct: 143 NIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSL 184

>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form Length = 402

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 67/155 (43%), Gaps = 25/155 (16%)
Query: 110 RSFKILRGHKASVHSIA-AETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQ 168
           ++  ++ GH A V  IA    + N++ SGS DCT+ +W   D    G  + ++       
Sbjct: 72  KNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPD---GGLVLPLR------- 121
Query: 169 VEEPQLEGEAISTLVGHTQCVSSVVW--PQQETIYSASWDHSVRTWDVEMGK---DLSDI 223
                   E + TL GHT+ V  V W    Q  + SA  D+ +  WDV  G     L   
Sbjct: 122 --------EPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPD 173
Query: 224 FCGKALNCIDIGGEGSALIAAGGSDPILRIWDPRK 258
                +  +D   +G ALI     D  +R+ +PRK
Sbjct: 174 VHPDTIYSVDWSRDG-ALICTSCRDKRVRVIEPRK 207

>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form Length = 402

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/116 (25%), Positives = 48/116 (41%), Gaps = 8/116 (6%)
Query: 223 IFCGKALNCIDIG--GEGSALIAAGGSDPILRIWDPRKPGT----SAPVFQFSSHNSWIS 276
           + CG     +DI        +IA+G  D  + +W+    G       PV     H   + 
Sbjct: 76  LVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVG 135
Query: 277 ACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVI--DSHKDKVLCADWWRGDSVI 330
              WH  +   L+SA  D  +++WD+ T   +  +  D H D +   DW R  ++I
Sbjct: 136 IVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALI 191

>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43 Length = 399

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 49/104 (47%), Gaps = 7/104 (6%)
Query: 209 VRTWDV-EMGKDLSDIFCGKA----LNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSA 263
           ++ WD  + G + S I         L+C+D       ++A GG D +L IWD R+ GT  
Sbjct: 214 LKIWDFRQQGNEPSQILSLTGDRVPLHCVDRHPNQQHVVATGGQDGMLSIWDVRQ-GT-M 271
Query: 264 PVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWP 307
           PV    +H + +    +H  +  HL + S DG +  WD  T  P
Sbjct: 272 PVSLLKAHEAEMWEVHFHPSNPEHLFTCSEDGSLWHWDASTDVP 315

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 59/232 (25%), Positives = 85/232 (36%), Gaps = 41/232 (17%)
Query: 59  ILEGHCGAVSSV--NIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNH---PKKIRSFK 113
           ILEGH   V+S+     + +      + + S+D+T+ +WK   EE   +   P K     
Sbjct: 16  ILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKA---- 71
Query: 114 ILRGHKASVHSIAAETSGNMVCSGSWDCTISLWR----TNDSDAAGNQ---VSIKKRKGN 166
            L GH   V  +A         S SWD T+ LW     T      G+Q    S+     N
Sbjct: 72  -LTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDN 130
Query: 167 NQVEEPQLEGE-AISTLVG-----------HTQCVSSV-----------VWPQQETIYSA 203
            Q+     E E  +  ++G           H+  VS V           V P      S 
Sbjct: 131 RQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASV 190
Query: 204 SWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEGSALIAAGGSDPILRIWD 255
            WD  ++ W+       +       +N + I   G   IA GG D  L IWD
Sbjct: 191 GWDGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGK-YIATGGKDKKLLIWD 241

>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 59/246 (23%), Positives = 100/246 (40%), Gaps = 51/246 (20%)
Query: 108 KIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLW---RTNDSDA----------- 153
           ++R+ + LRGH A ++++   T   ++ S S D  + +W    TN   A           
Sbjct: 55  QMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTC 114
Query: 154 ----AGNQVS------------IKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWPQQ 197
               +GN V+            +K R+GN +V            L GHT  +S   +   
Sbjct: 115 AYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRE---------LAGHTGYLSCCRFLDD 165
Query: 198 ETIYSASWDHSVRTWDVE--MGKDLSDIFCGKALNCIDIGGEGSALIAAGGSDPILRIWD 255
             I ++S D +   WD+E            G  ++ + +  + + L  +G  D   ++WD
Sbjct: 166 NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMS-LSLAPD-TRLFVSGACDASAKLWD 223
Query: 256 PRKPGTSAPVFQFSSHNSWISA-CKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSH 314
            R+         F+ H S I+A C + N + F   + S D    L+DLR    L    SH
Sbjct: 224 VREGMCRQT---FTGHESDINAICFFPNGNAF--ATGSDDATCRLFDLRADQELMTY-SH 277
Query: 315 KDKVLC 320
            D ++C
Sbjct: 278 -DNIIC 282

>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 59/246 (23%), Positives = 100/246 (40%), Gaps = 51/246 (20%)
Query: 108 KIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLW---RTNDSDA----------- 153
           ++R+ + LRGH A ++++   T   ++ S S D  + +W    TN   A           
Sbjct: 44  QMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTC 103
Query: 154 ----AGNQVS------------IKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWPQQ 197
               +GN V+            +K R+GN +V            L GHT  +S   +   
Sbjct: 104 AYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRE---------LAGHTGYLSCCRFLDD 154
Query: 198 ETIYSASWDHSVRTWDVE--MGKDLSDIFCGKALNCIDIGGEGSALIAAGGSDPILRIWD 255
             I ++S D +   WD+E            G  ++ + +  + + L  +G  D   ++WD
Sbjct: 155 NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMS-LSLAPD-TRLFVSGACDASAKLWD 212
Query: 256 PRKPGTSAPVFQFSSHNSWISA-CKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSH 314
            R+         F+ H S I+A C + N + F   + S D    L+DLR    L    SH
Sbjct: 213 VREGMCRQT---FTGHESDINAICFFPNGNAF--ATGSDDATCRLFDLRADQELMTY-SH 266
Query: 315 KDKVLC 320
            D ++C
Sbjct: 267 -DNIIC 271

>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 59/246 (23%), Positives = 100/246 (40%), Gaps = 51/246 (20%)
Query: 108 KIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLW---RTNDSDA----------- 153
           ++R+ + LRGH A ++++   T   ++ S S D  + +W    TN   A           
Sbjct: 44  QMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTC 103
Query: 154 ----AGNQVS------------IKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWPQQ 197
               +GN V+            +K R+GN +V            L GHT  +S   +   
Sbjct: 104 AYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRE---------LAGHTGYLSCCRFLDD 154
Query: 198 ETIYSASWDHSVRTWDVE--MGKDLSDIFCGKALNCIDIGGEGSALIAAGGSDPILRIWD 255
             I ++S D +   WD+E            G  ++ + +  + + L  +G  D   ++WD
Sbjct: 155 NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMS-LSLAPD-TRLFVSGACDASAKLWD 212
Query: 256 PRKPGTSAPVFQFSSHNSWISA-CKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSH 314
            R+         F+ H S I+A C + N + F   + S D    L+DLR    L    SH
Sbjct: 213 VREGMCRQT---FTGHESDINAICFFPNGNAF--ATGSDDATCRLFDLRADQELMTY-SH 266
Query: 315 KDKVLC 320
            D ++C
Sbjct: 267 -DNIIC 271

>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 59/246 (23%), Positives = 100/246 (40%), Gaps = 51/246 (20%)
Query: 108 KIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLW---RTNDSDA----------- 153
           ++R+ + LRGH A ++++   T   ++ S S D  + +W    TN   A           
Sbjct: 44  QMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTC 103
Query: 154 ----AGNQVS------------IKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWPQQ 197
               +GN V+            +K R+GN +V            L GHT  +S   +   
Sbjct: 104 AYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRE---------LAGHTGYLSCCRFLDD 154
Query: 198 ETIYSASWDHSVRTWDVE--MGKDLSDIFCGKALNCIDIGGEGSALIAAGGSDPILRIWD 255
             I ++S D +   WD+E            G  ++ + +  + + L  +G  D   ++WD
Sbjct: 155 NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMS-LSLAPD-TRLFVSGACDASAKLWD 212
Query: 256 PRKPGTSAPVFQFSSHNSWISA-CKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSH 314
            R+         F+ H S I+A C + N + F   + S D    L+DLR    L    SH
Sbjct: 213 VREGMCRQT---FTGHESDINAICFFPNGNAF--ATGSDDATCRLFDLRADQELMTY-SH 266
Query: 315 KDKVLC 320
            D ++C
Sbjct: 267 -DNIIC 271

>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 59/246 (23%), Positives = 100/246 (40%), Gaps = 51/246 (20%)
Query: 108 KIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLW---RTNDSDA----------- 153
           ++R+ + LRGH A ++++   T   ++ S S D  + +W    TN   A           
Sbjct: 44  QMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTC 103
Query: 154 ----AGNQVS------------IKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWPQQ 197
               +GN V+            +K R+GN +V            L GHT  +S   +   
Sbjct: 104 AYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRE---------LAGHTGYLSCCRFLDD 154
Query: 198 ETIYSASWDHSVRTWDVE--MGKDLSDIFCGKALNCIDIGGEGSALIAAGGSDPILRIWD 255
             I ++S D +   WD+E            G  ++ + +  + + L  +G  D   ++WD
Sbjct: 155 NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMS-LSLAPD-TRLFVSGACDASAKLWD 212
Query: 256 PRKPGTSAPVFQFSSHNSWISA-CKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSH 314
            R+         F+ H S I+A C + N + F   + S D    L+DLR    L    SH
Sbjct: 213 VREGMCRQT---FTGHESDINAICFFPNGNAF--ATGSDDATCRLFDLRADQELMTY-SH 266
Query: 315 KDKVLC 320
            D ++C
Sbjct: 267 -DNIIC 271

>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14 Length = 420

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 45/197 (22%), Positives = 77/197 (39%), Gaps = 31/197 (15%)
Query: 83  VATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCT 142
           + ++S+D  L++W           K   + + L GH+A+V  IA    G  V S S D T
Sbjct: 154 LISSSQDMQLKIWSV---------KDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGT 204
Query: 143 ISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWPQQETIYS 202
           I LW        G  +    RK     E P     +I+  VG  + +  +   ++  +  
Sbjct: 205 IRLWEC----GTGTTIHTFNRK-----ENPHDGVNSIALFVGTDRQLHEISTSKKNNLEF 255
Query: 203 ASWDHSVRTWDVEMGKDLSDIFCGK-----------ALNCIDIGGEGSALIAAGGSDPIL 251
            ++   V    V     + ++F  +           + N + + G  +  I AG  + +L
Sbjct: 256 GTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGML 315
Query: 252 RIWDPRKPGTSAPVFQF 268
             WD R P    PV +F
Sbjct: 316 AQWDLRSP--ECPVGEF 330

>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s Reg Particle Of The Proteasome Length = 417

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 45/197 (22%), Positives = 77/197 (39%), Gaps = 31/197 (15%)
Query: 83  VATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCT 142
           + ++S+D  L++W           K   + + L GH+A+V  IA    G  V S S D T
Sbjct: 151 LISSSQDMQLKIWSV---------KDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGT 201
Query: 143 ISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWPQQETIYS 202
           I LW        G  +    RK     E P     +I+  VG  + +  +   ++  +  
Sbjct: 202 IRLWEC----GTGTTIHTFNRK-----ENPHDGVNSIALFVGTDRQLHEISTSKKNNLEF 252
Query: 203 ASWDHSVRTWDVEMGKDLSDIFCGK-----------ALNCIDIGGEGSALIAAGGSDPIL 251
            ++   V    V     + ++F  +           + N + + G  +  I AG  + +L
Sbjct: 253 GTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGML 312
Query: 252 RIWDPRKPGTSAPVFQF 268
             WD R P    PV +F
Sbjct: 313 AQWDLRSP--ECPVGEF 327

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 61/134 (45%), Gaps = 9/134 (6%)
Query: 176 GEAISTLVGHTQCVSSVVWPQQET-IYSASWDHSVRTWDVEMGKDLSDIF--CGKALNCI 232
           GE +  +  H   V    +   ++ I + S D  V+ WD   GK L   +    + +NC 
Sbjct: 647 GEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGK-LVHTYDEHSEQVNCC 705
Query: 233 DIGGEGSALIAAGGS-DPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISA 291
               + + L+ A GS D  L++WD  +      +F    H + ++ C++       L S 
Sbjct: 706 HFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMF---GHTNSVNHCRFSPDDEL-LASC 761
Query: 292 SYDGKVMLWDLRTA 305
           S DG + LWD+R+A
Sbjct: 762 SADGTLRLWDVRSA 775

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 61/134 (45%), Gaps = 9/134 (6%)
Query: 176 GEAISTLVGHTQCVSSVVWPQQET-IYSASWDHSVRTWDVEMGKDLSDIF--CGKALNCI 232
           GE +  +  H   V    +   ++ I + S D  V+ WD   GK L   +    + +NC 
Sbjct: 654 GEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGK-LVHTYDEHSEQVNCC 712
Query: 233 DIGGEGSALIAAGGS-DPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISA 291
               + + L+ A GS D  L++WD  +      +F    H + ++ C++       L S 
Sbjct: 713 HFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMF---GHTNSVNHCRFSPDDEL-LASC 768
Query: 292 SYDGKVMLWDLRTA 305
           S DG + LWD+R+A
Sbjct: 769 SADGTLRLWDVRSA 782

>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex Length = 408

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 64/139 (46%), Gaps = 10/139 (7%)
Query: 185 HTQCVSSVVWPQQET--IYSASWDHSVRTWDVEMGKDLSDIFCGKAL---NCIDIGGEGS 239
           H   V +V W   +T    S+S+D +++ WD    +  +D+F  +     + +       
Sbjct: 98  HRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQ-TADVFNFEETVYSHHMSPVSTKH 156
Query: 240 ALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVML 299
            L+A G   P +++ D  K G+ + + Q   H   I A  W  +  + L +AS D +V L
Sbjct: 157 CLVAVGTRGPKVQLCD-LKSGSCSHILQ--GHRQEILAVSWSPRYDYILATASADSRVKL 213
Query: 300 WDLRTAWP-LSVIDSHKDK 317
           WD+R A   L  +D H  K
Sbjct: 214 WDVRRASGCLITLDQHNGK 232

>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1 Length = 313

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 63/267 (23%), Positives = 100/267 (37%), Gaps = 50/267 (18%)
Query: 24  DDWVSAVDGSNPGFILTGCYDNLGRVWKAGGVCTHI----------------LEGHCGAV 67
           D W+  V  +  GF+ + CYD+   +   GG  T I                L GH G V
Sbjct: 48  DQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTXINGVPLFATSGEDPLYTLIGHQGNV 107
Query: 68  SSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASV-HSIA 126
            S++    DG+    V + S D+T ++WK +   + N          L+ H ASV  +  
Sbjct: 108 CSLSF--QDGV----VISGSWDKTAKVWK-EGSLVYN----------LQAHNASVWDAKV 150
Query: 127 AETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQL------------ 174
              S N   + S D TI LW+ +      + +     +    V++               
Sbjct: 151 VSFSENKFLTASADKTIKLWQNDKVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLV 210
Query: 175 ---EGEAISTLVGHTQCVSSVVWPQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNC 231
               G+ + T  GH   V  +       I S   D +VR W  E G  L  +    A++ 
Sbjct: 211 DXHTGDVLRTYEGHESFVYCIKLLPNGDIVSCGEDRTVRIWSKENGS-LKQVITLPAISI 269
Query: 232 IDIGGEGSALIAAGGSDPILRIWDPRK 258
             +    +  I  G SD ++RI+   K
Sbjct: 270 WSVDCXSNGDIIVGSSDNLVRIFSQEK 296

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	347
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.98
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.98
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.98
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.98
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.98
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.97
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.97
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.97
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.97
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.97
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.96
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.95
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.95
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.95
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.93
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.93
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.92
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.92
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.91
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.9
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.89
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.89
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.89
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.88
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.88
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.88
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.88
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.87
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.87
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.86
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.86
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.86
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.85
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.84
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.83
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.83
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.83
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.82
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.82
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.82
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.82
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.8
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.78
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.77
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.75
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.75
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.73
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.73
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.73
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.71
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.7
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.67
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.67
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.66
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.64
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.63
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.63
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.62
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.62
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.61
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.6
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.6
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.6
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.59
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.56
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.55
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.55
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.52
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.51
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.48
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.48
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.47
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.46
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.46
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.45
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.43
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.43
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.42
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.41
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.41
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.38
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.37
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.37
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.33
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.33
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.31
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.28
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.28
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.25
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.23
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.2
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.18
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.17
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.13
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.11
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.07
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.05
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.0
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.99
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.98
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	98.96
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.86
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.85
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.85
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.84
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.83
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.8
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.76
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.75
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	98.74
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.73
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.71
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.71
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.68
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.65
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.64
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.62
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.6
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.6
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.49
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.43
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.4
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.37
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.3
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.29
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.27
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.26
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.25
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.24
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.17
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.11
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.1
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.09
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.06
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.06
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.02
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.0
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.0
4a2l_A	795	BT_4663, two-component system sensor histidine kin	97.99
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	97.98
3v65_B	386	Low-density lipoprotein receptor-related protein;	97.95
2p4o_A	306	Hypothetical protein; putative lactonase, structur	97.89
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.81
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	97.81
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	97.73
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.72
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	97.72
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	97.66
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	97.59
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.59
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.58
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	97.55
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	97.45
3v9f_A	781	Two-component system sensor histidine kinase/RESP	97.44
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.4
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	97.37
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	97.34
3v9f_A	781	Two-component system sensor histidine kinase/RESP	97.32
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	97.32
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.32
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	97.25
2p4o_A	306	Hypothetical protein; putative lactonase, structur	97.22
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.11
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.09
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.0
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.0
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	96.92
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	96.92
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	96.75
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	96.74
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	96.72
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	96.54
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	96.46
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	96.4
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	96.32
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	96.26
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	96.12
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	95.93
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	95.84
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	95.4
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	95.25
3kya_A	496	Putative phosphatase; structural genomics, joint c	95.25
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	95.18
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	94.82
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	94.75
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	94.15
3kya_A	496	Putative phosphatase; structural genomics, joint c	94.14
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	93.8
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	93.6
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	93.58
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	93.35
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	92.9
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	92.41
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	92.23
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	91.59
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	91.5
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	91.47
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	91.1
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	90.67
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	90.64
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	90.58
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	90.41
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	87.97
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	87.0
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	85.05
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	83.63
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	83.08

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=3e-48  Score=355.62  Aligned_cols=282  Identities=24%  Similarity=0.425  Sum_probs=246.5

Q ss_pred             CCCcCCceeeccCCC-CCEEEEEecCCeEEEEcCC-CeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEec
Q 036314           20 PSLHDDWVSAVDGSN-PGFILTGCYDNLGRVWKAG-GVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKF   97 (347)
Q Consensus        20 ~~~h~~~v~~~~~~~-~~~l~sg~~d~~i~iw~~~-~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~   97 (347)
                      ..+|.+.|++++|++ +.+|||||.|++|++||.. +.+.+.+.+|.+.|.+++|+|++    ..|++|+.|++|++||+
T Consensus       104 l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~----~~l~sgs~D~~i~iwd~  179 (410)
T 1vyh_C          104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSG----KLLASCSADMTIKLWDF  179 (410)
T ss_dssp             EECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTS----SEEEEEETTSCCCEEET
T ss_pred             ecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCC----CEEEEEeCCCeEEEEeC
Confidence            347999999999985 5799999999999999974 67788899999999999999854    37999999999999998


Q ss_pred             cccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCcccccccccc
Q 036314           98 DAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGE  177 (347)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (347)
                      .+.+         ++..+.+|...|.+++|+|++++|++|+.|++|++||+.++                         .
T Consensus       180 ~~~~---------~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~-------------------------~  225 (410)
T 1vyh_C          180 QGFE---------CIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTG-------------------------Y  225 (410)
T ss_dssp             TSSC---------EEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC-------------------------C
T ss_pred             CCCc---------eeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC-------------------------c
Confidence            7653         45678899999999999999999999999999999998753                         3


Q ss_pred             ccccccCCccceEEEEe-CCCCeEEEEecCCcEEEEECCCCceeeeeee-CeeeEEEEeeCCC-----------------
Q 036314          178 AISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFC-GKALNCIDIGGEG-----------------  238 (347)
Q Consensus       178 ~~~~~~~h~~~v~~~~~-~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~-----------------  238 (347)
                      ++.++.+|...|.++.+ +++..|++++.|++|++||+++++....+.. ...+.++++.|+.                 
T Consensus       226 ~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (410)
T 1vyh_C          226 CVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSG  305 (410)
T ss_dssp             EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-----
T ss_pred             EEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccC
Confidence            45677889999999998 5778899999999999999999887766643 4568899997642                 


Q ss_pred             --CcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecCCCC
Q 036314          239 --SALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKD  316 (347)
Q Consensus       239 --~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h~~  316 (347)
                        +.++++|+.|+.|++||++..   ..+..+.+|.++|.+++|+|++. +|++|+.|++|++||+++++.+.++.+|.+
T Consensus       306 ~~g~~l~sgs~D~~i~iwd~~~~---~~~~~~~~h~~~v~~v~~~~~g~-~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~  381 (410)
T 1vyh_C          306 KPGPFLLSGSRDKTIKMWDVSTG---MCLMTLVGHDNWVRGVLFHSGGK-FILSCADDKTLRVWDYKNKRCMKTLNAHEH  381 (410)
T ss_dssp             --CCEEEEEETTSEEEEEETTTT---EEEEEEECCSSCEEEEEECSSSS-CEEEEETTTEEEEECCTTSCCCEEEECCSS
T ss_pred             CCCCEEEEEeCCCeEEEEECCCC---ceEEEEECCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCceEEEEcCCCC
Confidence              458999999999999999753   34678889999999999999986 599999999999999999999999999999


Q ss_pred             eEEEEeecC-CCEEEEccCCceEEEeec
Q 036314          317 KVLCADWWR-GDSVISGGVDSKLCVSSG  343 (347)
Q Consensus       317 ~v~~~~~~~-~~~l~s~s~D~~v~vw~~  343 (347)
                      .|++++|+| +.+|||||.|++|+||+.
T Consensus       382 ~v~~l~~~~~~~~l~sgs~D~~i~vW~~  409 (410)
T 1vyh_C          382 FVTSLDFHKTAPYVVTGSVDQTVKVWEC  409 (410)
T ss_dssp             CEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred             cEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence            999999986 668999999999999974

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=1.3e-47  Score=343.09  Aligned_cols=285  Identities=20%  Similarity=0.247  Sum_probs=232.3

Q ss_pred             CCCcCCceeeccCCC-CCEEEEEecCCeEEEEcCC------------CeEEEEeeccCCceEEEEEeecCCCceEEEEEc
Q 036314           20 PSLHDDWVSAVDGSN-PGFILTGCYDNLGRVWKAG------------GVCTHILEGHCGAVSSVNIIKSDGLKYVTVATA   86 (347)
Q Consensus        20 ~~~h~~~v~~~~~~~-~~~l~sg~~d~~i~iw~~~------------~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~   86 (347)
                      +..|...|.+++|++ |.+|++++ |+++|+||..            .........|...|.+++|++++     .|++|
T Consensus        26 ~~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-----~l~~~   99 (344)
T 4gqb_B           26 PACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-----GILVA   99 (344)
T ss_dssp             CSSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-----EEEEE
T ss_pred             cccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-----eEEEE
Confidence            456889999999995 55777666 8888888731            00111233466779999999853     48899


Q ss_pred             cCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCC
Q 036314           87 SKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGN  166 (347)
Q Consensus        87 s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~  166 (347)
                      +.||+|++||+.+++...     .....+.+|.+.|++++|+|+|++|++|+.|++|++||++++               
T Consensus       100 s~dg~v~lWd~~~~~~~~-----~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~---------------  159 (344)
T 4gqb_B          100 SDSGAVELWELDENETLI-----VSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQ---------------  159 (344)
T ss_dssp             ETTSEEEEEEECTTSSCE-----EEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT---------------
T ss_pred             ECCCEEEEEeccCCCcee-----EeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCC---------------
Confidence            999999999998765321     122345689999999999999999999999999999998753               


Q ss_pred             CccccccccccccccccCCccceEEEEeC-CC-CeEEEEecCCcEEEEECCCCceeeeeee---CeeeEEEEeeCCCCcE
Q 036314          167 NQVEEPQLEGEAISTLVGHTQCVSSVVWP-QQ-ETIYSASWDHSVRTWDVEMGKDLSDIFC---GKALNCIDIGGEGSAL  241 (347)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~-~~l~s~s~dg~v~vwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~  241 (347)
                                +.+..+.+|...|.+++|. ++ ..|++++.|++|++||+++++....+..   ...+.++++.+.+..+
T Consensus       160 ----------~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  229 (344)
T 4gqb_B          160 ----------VVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEV  229 (344)
T ss_dssp             ----------EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTE
T ss_pred             ----------cEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcc
Confidence                      3466788999999999984 44 4689999999999999999887776642   2357889998888889


Q ss_pred             EEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecCCCCeEEEE
Q 036314          242 IAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKVLCA  321 (347)
Q Consensus       242 la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h~~~v~~~  321 (347)
                      +++|+.|++|++||++..   ..+..+.+|.+.|.+++|+|++..+||+|+.|++|+|||+++++ +..+.+|.+.|+++
T Consensus       230 l~sg~~dg~v~~wd~~~~---~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~-~~~~~~H~~~V~~v  305 (344)
T 4gqb_B          230 FVFGDENGTVSLVDTKST---SCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSE-LFRSQAHRDFVRDA  305 (344)
T ss_dssp             EEEEETTSEEEEEESCC-----CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCE-EEEECCCSSCEEEE
T ss_pred             eEEeccCCcEEEEECCCC---cEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCc-EEEEcCCCCCEEEE
Confidence            999999999999999853   34678899999999999999987779999999999999999876 45678999999999


Q ss_pred             eecC-CC-EEEEccCCceEEEeecc
Q 036314          322 DWWR-GD-SVISGGVDSKLCVSSGV  344 (347)
Q Consensus       322 ~~~~-~~-~l~s~s~D~~v~vw~~~  344 (347)
                      +|+| +. .|+|||.|++|++|+.+
T Consensus       306 ~~sp~~~~llas~s~D~~v~~w~v~  330 (344)
T 4gqb_B          306 TWSPLNHSLLTTVGWDHQVVHHVVP  330 (344)
T ss_dssp             EECSSSTTEEEEEETTSCEEEEECC
T ss_pred             EEeCCCCeEEEEEcCCCeEEEEECC
Confidence            9986 44 57899999999999865

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=9.3e-47  Score=334.62  Aligned_cols=282  Identities=22%  Similarity=0.357  Sum_probs=242.7

Q ss_pred             CCCcCCceeeccCCC-----CCEEEEEecCCeEEEEcCC-Ce--EEEEeeccCCceEEEEEeecCCCceEEEEEccCCCc
Q 036314           20 PSLHDDWVSAVDGSN-----PGFILTGCYDNLGRVWKAG-GV--CTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQT   91 (347)
Q Consensus        20 ~~~h~~~v~~~~~~~-----~~~l~sg~~d~~i~iw~~~-~~--~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~   91 (347)
                      ..+|++.|+++++++     +.+|||||.|++||+|+.. +.  +...+.+|...|.+++|+++.    ..+++++.|++
T Consensus        28 ~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~----~~l~s~s~D~~  103 (321)
T 3ow8_A           28 EQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTL----PIAASSSLDAH  103 (321)
T ss_dssp             TTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSS----SEEEEEETTSE
T ss_pred             cccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCC----CEEEEEeCCCc
Confidence            458999999999863     4589999999999999964 32  345789999999999999854    37999999999


Q ss_pred             EEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCcccc
Q 036314           92 LRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEE  171 (347)
Q Consensus        92 v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~  171 (347)
                      |++||+.+++         .+..+..|...+.+++|+|++++|++|+.|++|++|++++..                   
T Consensus       104 i~lWd~~~~~---------~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~-------------------  155 (321)
T 3ow8_A          104 IRLWDLENGK---------QIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGK-------------------  155 (321)
T ss_dssp             EEEEETTTTE---------EEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCS-------------------
T ss_pred             EEEEECCCCC---------EEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCc-------------------
Confidence            9999998764         445677888899999999999999999999999999987542                   


Q ss_pred             ccccccccccccCCccceEEEEe-CCCCeEEEEecCCcEEEEECCCCceeeeeee-CeeeEEEEeeCCCCcEEEEecCCC
Q 036314          172 PQLEGEAISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFC-GKALNCIDIGGEGSALIAAGGSDP  249 (347)
Q Consensus       172 ~~~~~~~~~~~~~h~~~v~~~~~-~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~la~~~~d~  249 (347)
                            ....+..|...+.+++| |++++|++++.|+.|++||+++++.+..+.. ..++.+++|+|+ +.+|++++.|+
T Consensus       156 ------~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd-~~~l~s~s~dg  228 (321)
T 3ow8_A          156 ------KEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPD-SQLLVTASDDG  228 (321)
T ss_dssp             ------EEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTT-SCEEEEECTTS
T ss_pred             ------eeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCC-CCEEEEEcCCC
Confidence                  23355667788999998 6788999999999999999999988777754 347899999765 56889999999


Q ss_pred             cEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecCCCCeEEEEeecC-CCE
Q 036314          250 ILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKVLCADWWR-GDS  328 (347)
Q Consensus       250 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~  328 (347)
                      .|++||++..   .....+.+|...|.+++|+|++. +|++++.|++|++||+++++++.++.+|.+.|++++|++ +++
T Consensus       229 ~i~iwd~~~~---~~~~~~~~h~~~v~~~~~sp~~~-~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~  304 (321)
T 3ow8_A          229 YIKIYDVQHA---NLAGTLSGHASWVLNVAFCPDDT-HFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSK  304 (321)
T ss_dssp             CEEEEETTTC---CEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSE
T ss_pred             eEEEEECCCc---ceeEEEcCCCCceEEEEECCCCC-EEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCE
Confidence            9999999753   34678899999999999999986 599999999999999999999999999999999999985 678


Q ss_pred             EEEccCCceEEEeecc
Q 036314          329 VISGGVDSKLCVSSGV  344 (347)
Q Consensus       329 l~s~s~D~~v~vw~~~  344 (347)
                      |++++.|++|+||+-+
T Consensus       305 l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          305 IVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             EEEEETTCCEEEEECC
T ss_pred             EEEEeCCCeEEEEeCC
Confidence            9999999999999865

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=4e-47  Score=341.87  Aligned_cols=288  Identities=18%  Similarity=0.182  Sum_probs=231.2

Q ss_pred             CCCCcCCceeeccCC-CCCEEEEEec------CCeEEEEcCC-Ce----EEEEeeccCCceEEEEEeecCCCceEEEEEc
Q 036314           19 EPSLHDDWVSAVDGS-NPGFILTGCY------DNLGRVWKAG-GV----CTHILEGHCGAVSSVNIIKSDGLKYVTVATA   86 (347)
Q Consensus        19 ~~~~h~~~v~~~~~~-~~~~l~sg~~------d~~i~iw~~~-~~----~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~   86 (347)
                      .+.+|+..|++++|+ +|.+|||||.      |+++++|+.. +.    ......+|...|.+++|+|++     .++++
T Consensus        37 ~p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~-----~~l~~  111 (357)
T 4g56_B           37 APACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEK-----GILVA  111 (357)
T ss_dssp             ---CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTT-----EEEEE
T ss_pred             CcccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCC-----CEEEE
Confidence            356899999999999 5679999996      7889999863 22    123456789999999999853     36778


Q ss_pred             cCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCC
Q 036314           87 SKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGN  166 (347)
Q Consensus        87 s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~  166 (347)
                      +.||+|++||+.+++....     ......+|..+|.+++|+|++++|++|+.|++|++||+++.               
T Consensus       112 s~dg~v~lWd~~~~~~~~~-----~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~---------------  171 (357)
T 4g56_B          112 SDSGAVELWEILEKESLLV-----NKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQK---------------  171 (357)
T ss_dssp             ETTSCEEEC--------CC-----CCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTT---------------
T ss_pred             ECCCEEEEeeccccceeEE-----EeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCC---------------
Confidence            9999999999987653211     11234589999999999999999999999999999998753               


Q ss_pred             CccccccccccccccccCCccceEEEEeC-CC-CeEEEEecCCcEEEEECCCCceeeeeee---CeeeEEEEeeCCCCcE
Q 036314          167 NQVEEPQLEGEAISTLVGHTQCVSSVVWP-QQ-ETIYSASWDHSVRTWDVEMGKDLSDIFC---GKALNCIDIGGEGSAL  241 (347)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~-~~l~s~s~dg~v~vwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~  241 (347)
                                +.+..+.+|...|.+++|. ++ ..+++++.|++|++||+++++....+..   ...+.+++++|+++.+
T Consensus       172 ----------~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~  241 (357)
T 4g56_B          172 ----------AVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDT  241 (357)
T ss_dssp             ----------EEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTE
T ss_pred             ----------cEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccce
Confidence                      3456778899999999984 44 4689999999999999998877655432   3457899998888889


Q ss_pred             EEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecCCCCeEEEE
Q 036314          242 IAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKVLCA  321 (347)
Q Consensus       242 la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h~~~v~~~  321 (347)
                      |++|+.|+.|++||++..   .....+.+|...|.+++|+|++..+||+|+.|++|+|||+++++.+.. .+|.+.|+++
T Consensus       242 la~g~~d~~i~~wd~~~~---~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~-~~H~~~V~~v  317 (357)
T 4g56_B          242 FACGDETGNVSLVNIKNP---DSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRD-LSHRDFVTGV  317 (357)
T ss_dssp             EEEEESSSCEEEEESSCG---GGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEE-CCCSSCEEEE
T ss_pred             EEEeecccceeEEECCCC---cEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEE-CCCCCCEEEE
Confidence            999999999999999753   346788999999999999999877899999999999999998876655 4899999999


Q ss_pred             eecC--CCEEEEccCCceEEEeeccc
Q 036314          322 DWWR--GDSVISGGVDSKLCVSSGVS  345 (347)
Q Consensus       322 ~~~~--~~~l~s~s~D~~v~vw~~~~  345 (347)
                      +|+|  +++|||||.|++|++|+.++
T Consensus       318 afsP~d~~~l~s~s~Dg~v~iW~~~~  343 (357)
T 4g56_B          318 AWSPLDHSKFTTVGWDHKVLHHHLPS  343 (357)
T ss_dssp             EECSSSTTEEEEEETTSCEEEEECC-
T ss_pred             EEeCCCCCEEEEEcCCCeEEEEECCC
Confidence            9985  67899999999999999763

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=6.7e-46  Score=326.56  Aligned_cols=282  Identities=22%  Similarity=0.298  Sum_probs=238.4

Q ss_pred             CCCCcCCceeeccCCC-CCEEEEEecCCeEEEEcCC-CeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEe
Q 036314           19 EPSLHDDWVSAVDGSN-PGFILTGCYDNLGRVWKAG-GVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWK   96 (347)
Q Consensus        19 ~~~~h~~~v~~~~~~~-~~~l~sg~~d~~i~iw~~~-~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd   96 (347)
                      ...+|.+.|++++|++ +.+|+||+.||+|++||.. +.+++.+.+|...|.+++|++++    ..|++|+.|++|++||
T Consensus         8 ~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~----~~l~s~s~d~~i~vwd   83 (304)
T 2ynn_A            8 TFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARK----NWIIVGSDDFRIRVFN   83 (304)
T ss_dssp             EEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGG----TEEEEEETTSEEEEEE
T ss_pred             eecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCC----CEEEEECCCCEEEEEE
Confidence            3568999999999984 6699999999999999975 67888999999999999999954    3799999999999999


Q ss_pred             ccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccc
Q 036314           97 FDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEG  176 (347)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (347)
                      +.+++         .+..+.+|...|.+++|+|++++|++|+.|++|++||+++..                        
T Consensus        84 ~~~~~---------~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~------------------------  130 (304)
T 2ynn_A           84 YNTGE---------KVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW------------------------  130 (304)
T ss_dssp             TTTCC---------EEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTT------------------------
T ss_pred             CCCCc---------EEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCc------------------------
Confidence            98764         456788999999999999999999999999999999986431                        


Q ss_pred             cccccccCCccceEEEEeC--CCCeEEEEecCCcEEEEECCCCceeeeeeeC--eeeEEEEeeC-CCCcEEEEecCCCcE
Q 036314          177 EAISTLVGHTQCVSSVVWP--QQETIYSASWDHSVRTWDVEMGKDLSDIFCG--KALNCIDIGG-EGSALIAAGGSDPIL  251 (347)
Q Consensus       177 ~~~~~~~~h~~~v~~~~~~--~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~la~~~~d~~i  251 (347)
                      .....+.+|...|.+++|.  ++..|++++.|++|++||++.+.....+..+  ..+..+++.+ +++.++++|+.|++|
T Consensus       131 ~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i  210 (304)
T 2ynn_A          131 ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTI  210 (304)
T ss_dssp             EEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEE
T ss_pred             chhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeE
Confidence            1234678899999999994  4578999999999999999887665555432  4577788765 356689999999999


Q ss_pred             EEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecCCCCeEEEEeecC-CC--E
Q 036314          252 RIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKVLCADWWR-GD--S  328 (347)
Q Consensus       252 ~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~-~~--~  328 (347)
                      ++||++..   ..+..+.+|...|.+++|+|++. +|++|+.|++|++||+++++.++++..|.+.+++++|+| +.  +
T Consensus       211 ~iWd~~~~---~~~~~~~~h~~~v~~~~~~p~~~-~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (304)
T 2ynn_A          211 KIWDYQTK---SCVATLEGHMSNVSFAVFHPTLP-IIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNY  286 (304)
T ss_dssp             EEEETTTT---EEEEEEECCSSCEEEEEECSSSS-EEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGC
T ss_pred             EEEeCCCC---ccceeeCCCCCCEEEEEECCCCC-EEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceE
Confidence            99999753   35778899999999999999986 699999999999999999999999999999999999865 43  4


Q ss_pred             EEEccCCceEEEee
Q 036314          329 VISGGVDSKLCVSS  342 (347)
Q Consensus       329 l~s~s~D~~v~vw~  342 (347)
                      +|+|+.||.+ +|+
T Consensus       287 ~asg~~~g~~-~~~  299 (304)
T 2ynn_A          287 IASGFDNGFT-VLS  299 (304)
T ss_dssp             EEEEETTEEE-EEE
T ss_pred             EEEecCCceE-EEE
Confidence            7887766655 444

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=2.8e-45  Score=327.65  Aligned_cols=283  Identities=21%  Similarity=0.276  Sum_probs=240.2

Q ss_pred             CCCcCCceeeccCC-CCCEEEEEecCCeEEEEcC-CCeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEec
Q 036314           20 PSLHDDWVSAVDGS-NPGFILTGCYDNLGRVWKA-GGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKF   97 (347)
Q Consensus        20 ~~~h~~~v~~~~~~-~~~~l~sg~~d~~i~iw~~-~~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~   97 (347)
                      ..+|.+.|++++|+ ++.+|+|||.|++|++||. .+..+..+..|...|.+++|+|++    ..|++++.|++|++|++
T Consensus        51 l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~----~~l~s~~~d~~v~iw~~  126 (340)
T 1got_B           51 LRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG----NYVACGGLDNICSIYNL  126 (340)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTS----SEEEEEETTCEEEEEET
T ss_pred             ecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCC----CEEEEEeCCCeEEEEEC
Confidence            56899999999998 5679999999999999996 467888899999999999999954    37999999999999998


Q ss_pred             cccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCcccccccccc
Q 036314           98 DAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGE  177 (347)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (347)
                      ...+     ...+....+.+|...|.++.|++++. +++++.|++|++||+.+.                         .
T Consensus       127 ~~~~-----~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~-------------------------~  175 (340)
T 1got_B          127 KTRE-----GNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETG-------------------------Q  175 (340)
T ss_dssp             TTCS-----BSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTT-------------------------E
T ss_pred             ccCC-----CcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCC-------------------------c
Confidence            7542     12234556889999999999998875 889999999999998753                         3


Q ss_pred             ccccccCCccceEEEEe-CCCCeEEEEecCCcEEEEECCCCceeeeeee-CeeeEEEEeeCCCCcEEEEecCCCcEEEEe
Q 036314          178 AISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFC-GKALNCIDIGGEGSALIAAGGSDPILRIWD  255 (347)
Q Consensus       178 ~~~~~~~h~~~v~~~~~-~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~la~~~~d~~i~iwd  255 (347)
                      .+..+.+|...|.++.| |++..+++++.|++|++||++++.....+.. ...+.+++++|+ +..|++|+.|++|++||
T Consensus       176 ~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~-~~~l~s~s~d~~v~iwd  254 (340)
T 1got_B          176 QTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPN-GNAFATGSDDATCRLFD  254 (340)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEE
T ss_pred             EEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCC-CCEEEEEcCCCcEEEEE
Confidence            35567889999999998 5677899999999999999999887776653 457899999765 56889999999999999


Q ss_pred             CCCCCCCCCeEEec--CCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecCCCCeEEEEeecC-CCEEEEc
Q 036314          256 PRKPGTSAPVFQFS--SHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKVLCADWWR-GDSVISG  332 (347)
Q Consensus       256 ~~~~~~~~~~~~~~--~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~l~s~  332 (347)
                      ++...   .+..+.  .+...|.+++|+|++. +|++|+.|+.|++||+.+++.+..+.+|.+.|.+++|+| |.+||||
T Consensus       255 ~~~~~---~~~~~~~~~~~~~v~~~~~s~~g~-~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~  330 (340)
T 1got_B          255 LRADQ---ELMTYSHDNIICGITSVSFSKSGR-LLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATG  330 (340)
T ss_dssp             TTTTE---EEEEECCTTCCSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEE
T ss_pred             CCCCc---EEEEEccCCcccceEEEEECCCCC-EEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEE
Confidence            97532   233333  3345799999999986 699999999999999999988999999999999999985 6789999


Q ss_pred             cCCceEEEee
Q 036314          333 GVDSKLCVSS  342 (347)
Q Consensus       333 s~D~~v~vw~  342 (347)
                      |.|++|+||+
T Consensus       331 s~D~~i~iWd  340 (340)
T 1got_B          331 SWDSFLKIWN  340 (340)
T ss_dssp             ETTSCEEEEC
T ss_pred             cCCccEEecC
Confidence            9999999996

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=1.9e-44  Score=324.05  Aligned_cols=286  Identities=19%  Similarity=0.220  Sum_probs=240.6

Q ss_pred             CCCcCCceeeccCC-CCCEEEEEecCCeEEEEcC-CCeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEec
Q 036314           20 PSLHDDWVSAVDGS-NPGFILTGCYDNLGRVWKA-GGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKF   97 (347)
Q Consensus        20 ~~~h~~~v~~~~~~-~~~~l~sg~~d~~i~iw~~-~~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~   97 (347)
                      ..+|.+.|++++|+ ++.+|||||.|++|++||. .+...+.+..|...|.+++|+|++    ..|++++.|+++++|++
T Consensus        60 l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g----~~lasg~~d~~i~v~~~  135 (354)
T 2pbi_B           60 LKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSG----CAIACGGLDNKCSVYPL  135 (354)
T ss_dssp             EECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTS----SEEEEESTTSEEEEEEC
T ss_pred             ecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCC----CEEEEeeCCCCEEEEEE
Confidence            56899999999998 4679999999999999996 467778889999999999999954    37999999999999998


Q ss_pred             cccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCcccccccccc
Q 036314           98 DAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGE  177 (347)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (347)
                      ......   ........+.+|...|.+++|++++..|++++.|++|++||++++                         +
T Consensus       136 ~~~~~~---~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~-------------------------~  187 (354)
T 2pbi_B          136 TFDKNE---NMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESG-------------------------Q  187 (354)
T ss_dssp             CCCTTC---CSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC-------------------------C
T ss_pred             eccccc---cccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCC-------------------------e
Confidence            643211   112234567789999999999999999999999999999998753                         3


Q ss_pred             ccccccCCccceEEEEeC---CCCeEEEEecCCcEEEEECCCCceeeeeee-CeeeEEEEeeCCCCcEEEEecCCCcEEE
Q 036314          178 AISTLVGHTQCVSSVVWP---QQETIYSASWDHSVRTWDVEMGKDLSDIFC-GKALNCIDIGGEGSALIAAGGSDPILRI  253 (347)
Q Consensus       178 ~~~~~~~h~~~v~~~~~~---~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~la~~~~d~~i~i  253 (347)
                      .+..+.+|...|.++.+.   ++..|++++.|++|++||+++++.+..+.. ...+.+++++|+ +..|++++.|++|++
T Consensus       188 ~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~-~~~l~s~s~D~~v~l  266 (354)
T 2pbi_B          188 LLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPS-GDAFASGSDDATCRL  266 (354)
T ss_dssp             EEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTT-SSEEEEEETTSCEEE
T ss_pred             EEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCC-CCEEEEEeCCCeEEE
Confidence            456778899999999873   357899999999999999999988777653 457899999765 468899999999999


Q ss_pred             EeCCCCCCCCCeEEecC--CCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecCCCCeEEEEeecC-CCEEE
Q 036314          254 WDPRKPGTSAPVFQFSS--HNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKVLCADWWR-GDSVI  330 (347)
Q Consensus       254 wd~~~~~~~~~~~~~~~--h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~l~  330 (347)
                      ||++...   ....+..  +...+.+++|+|++. +|++|+.|++|++||+++++.+..+.+|.+.|.+++|+| |++||
T Consensus       267 wd~~~~~---~~~~~~~~~~~~~~~~~~~s~~g~-~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~  342 (354)
T 2pbi_B          267 YDLRADR---EVAIYSKESIIFGASSVDFSLSGR-LLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFC  342 (354)
T ss_dssp             EETTTTE---EEEEECCTTCCSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEE
T ss_pred             EECCCCc---EEEEEcCCCcccceeEEEEeCCCC-EEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEE
Confidence            9997532   2333333  334689999999986 699999999999999999998999999999999999985 77899


Q ss_pred             EccCCceEEEee
Q 036314          331 SGGVDSKLCVSS  342 (347)
Q Consensus       331 s~s~D~~v~vw~  342 (347)
                      +||.|++|+||+
T Consensus       343 sgs~D~~v~vW~  354 (354)
T 2pbi_B          343 SGSWDHTLRVWA  354 (354)
T ss_dssp             EEETTSEEEEEC
T ss_pred             EEcCCCCEEecC
Confidence            999999999996

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.1e-44  Score=320.68  Aligned_cols=295  Identities=21%  Similarity=0.290  Sum_probs=225.1

Q ss_pred             CCCcCCceeeccCCCCCEEEEEecCCeEEEEcCCC---eEEEEe-ec-cCCceEEEEEeecCCCceEEEEEccCCCcEEE
Q 036314           20 PSLHDDWVSAVDGSNPGFILTGCYDNLGRVWKAGG---VCTHIL-EG-HCGAVSSVNIIKSDGLKYVTVATASKDQTLRL   94 (347)
Q Consensus        20 ~~~h~~~v~~~~~~~~~~l~sg~~d~~i~iw~~~~---~~~~~l-~~-h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~   94 (347)
                      ..+|++.|++++++++ +|||||.|++|++|+...   .....+ .+ |.+.|.+++|+|++    ..|++++.|++|++
T Consensus        10 ~~~h~~~v~~~~~s~~-~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~----~~las~s~D~~v~i   84 (330)
T 2hes_X           10 LKLYKEKIWSFDFSQG-ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHT----SLLAAGSFDSTVSI   84 (330)
T ss_dssp             EECCSSCEEEEEEETT-EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTS----SEEEEEETTSCEEE
T ss_pred             eccCCCceeeeccCCC-EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCC----CEEEEEeCCCcEEE
Confidence            4589999999999865 999999999999999753   455556 44 99999999999954    37999999999999


Q ss_pred             EeccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccc
Q 036314           95 WKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQL  174 (347)
Q Consensus        95 wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (347)
                      |++.....  .....+....+.+|..+|.+++|+|++++|++|+.|++|++||+.....                     
T Consensus        85 w~~~~~~~--~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~---------------------  141 (330)
T 2hes_X           85 WAKEESAD--RTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGE---------------------  141 (330)
T ss_dssp             EEC---------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCC---------------------
T ss_pred             EEcccCcC--ccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCC---------------------
Confidence            99854210  0012235567889999999999999999999999999999999853210                     


Q ss_pred             cccccccccCCccceEEEEe-CCCCeEEEEecCCcEEEEECCCC--ceeeeeee-CeeeEEEEeeCCC-CcEEEEecCCC
Q 036314          175 EGEAISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMG--KDLSDIFC-GKALNCIDIGGEG-SALIAAGGSDP  249 (347)
Q Consensus       175 ~~~~~~~~~~h~~~v~~~~~-~~~~~l~s~s~dg~v~vwd~~~~--~~~~~~~~-~~~~~~~~~~~~~-~~~la~~~~d~  249 (347)
                      ..+++..+.+|...|.++.| |++.+|++++.|++|++||.+.+  +++..+.. ...+.+++|+++. ...+++++.|+
T Consensus       142 ~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~  221 (330)
T 2hes_X          142 EYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDS  221 (330)
T ss_dssp             CCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTS
T ss_pred             CeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCC
Confidence            01234567889999999998 57789999999999999998766  34444443 3478899998753 45789999999


Q ss_pred             cEEEEeCCCCCCC-----CCeEEecC-CCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCc--cce-eecCCCC-eEE
Q 036314          250 ILRIWDPRKPGTS-----APVFQFSS-HNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAW--PLS-VIDSHKD-KVL  319 (347)
Q Consensus       250 ~i~iwd~~~~~~~-----~~~~~~~~-h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~--~~~-~~~~h~~-~v~  319 (347)
                      +|++||++.....     .....+.+ |...|.+++|++++  +|++++.|++|+|||.++++  ... .+.+|.. .|.
T Consensus       222 ~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~--~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~  299 (330)
T 2hes_X          222 TVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG--LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEIN  299 (330)
T ss_dssp             CEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS--CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEE
T ss_pred             eEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC--EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEE
Confidence            9999998642111     12234444 89999999999765  59999999999999998763  232 3367887 899


Q ss_pred             EEeecC---CCEEEEccCCceEEEeecc
Q 036314          320 CADWWR---GDSVISGGVDSKLCVSSGV  344 (347)
Q Consensus       320 ~~~~~~---~~~l~s~s~D~~v~vw~~~  344 (347)
                      +++|+|   +++|||||.|++|+||+..
T Consensus       300 ~v~~~~~~~~~~las~s~Dg~v~~W~~~  327 (330)
T 2hes_X          300 VVKWLELNGKTILATGGDDGIVNFWSLE  327 (330)
T ss_dssp             EEEEC-----CCEEEEETTSEEEEEEC-
T ss_pred             EEEEecCCCceEEEEecCCCcEEEEEec
Confidence            999986   5689999999999999854

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=7.4e-44  Score=319.11  Aligned_cols=291  Identities=24%  Similarity=0.363  Sum_probs=231.7

Q ss_pred             CCCcCC-ceeeccCC-CCCEEEEEecCCeEEEEcCCC-e--EEE-EeeccCCceEEEEEeecCCCceEEEEEccCCCcEE
Q 036314           20 PSLHDD-WVSAVDGS-NPGFILTGCYDNLGRVWKAGG-V--CTH-ILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLR   93 (347)
Q Consensus        20 ~~~h~~-~v~~~~~~-~~~~l~sg~~d~~i~iw~~~~-~--~~~-~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~   93 (347)
                      ..+|.+ .|++++|+ ++.+|||||.|++|+|||..+ .  +.. ...+|.+.|.+++|+|++    .+|++|+.|++|+
T Consensus        11 ~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g----~~l~s~s~D~~v~   86 (345)
T 3fm0_A           11 VPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCG----NYLASASFDATTC   86 (345)
T ss_dssp             ECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTS----SEEEEEETTSCEE
T ss_pred             ecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCC----CEEEEEECCCcEE
Confidence            347887 99999998 567999999999999999753 3  222 346899999999999954    3799999999999


Q ss_pred             EEeccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCcccccc
Q 036314           94 LWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQ  173 (347)
Q Consensus        94 ~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (347)
                      +|++..++       .++...+.+|..+|.+++|+|++++|++|+.|++|++||+.....                    
T Consensus        87 iw~~~~~~-------~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~--------------------  139 (345)
T 3fm0_A           87 IWKKNQDD-------FECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDE--------------------  139 (345)
T ss_dssp             EEEECCC--------EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSC--------------------
T ss_pred             EEEccCCC-------eEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCC--------------------
Confidence            99987543       234567889999999999999999999999999999999875321                    


Q ss_pred             ccccccccccCCccceEEEEe-CCCCeEEEEecCCcEEEEECCCCcee--eeee-eCeeeEEEEeeCCCCcEEEEecCCC
Q 036314          174 LEGEAISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDL--SDIF-CGKALNCIDIGGEGSALIAAGGSDP  249 (347)
Q Consensus       174 ~~~~~~~~~~~h~~~v~~~~~-~~~~~l~s~s~dg~v~vwd~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~la~~~~d~  249 (347)
                        ..++..+.+|...|.+++| |++++|++++.|++|++||++.+...  ..+. +...+.+++|+|+ +.+|++++.|+
T Consensus       140 --~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~-g~~l~s~s~D~  216 (345)
T 3fm0_A          140 --YECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPS-GQRLASCSDDR  216 (345)
T ss_dssp             --EEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTT-SSEEEEEETTS
T ss_pred             --eEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCC-CCEEEEEeCCC
Confidence              1234567789999999998 57788999999999999999876533  3333 2357899999765 56889999999


Q ss_pred             cEEEEeCCCCCCCC------------CeEEecC-CCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCcc----c----
Q 036314          250 ILRIWDPRKPGTSA------------PVFQFSS-HNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWP----L----  308 (347)
Q Consensus       250 ~i~iwd~~~~~~~~------------~~~~~~~-h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~----~----  308 (347)
                      +|++||...+....            .+..+.+ |...|.+++|+|++. .|++++.|+.|++|+.+.+..    .    
T Consensus       217 ~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~  295 (345)
T 3fm0_A          217 TVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTG-ALATACGDDAIRVFQEDPNSDPQQPTFSLT  295 (345)
T ss_dssp             CEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTC-CEEEEETTSCEEEEEECTTSCTTSCCEEEE
T ss_pred             eEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCC-EEEEEeCCCeEEEEEeCCCCCcceeeEEEE
Confidence            99999964322111            1223444 888999999999986 599999999999999876431    1    


Q ss_pred             -eeecCCCCeEEEEeecC-C-CEEEEccCCceEEEeeccc
Q 036314          309 -SVIDSHKDKVLCADWWR-G-DSVISGGVDSKLCVSSGVS  345 (347)
Q Consensus       309 -~~~~~h~~~v~~~~~~~-~-~~l~s~s~D~~v~vw~~~~  345 (347)
                       ..+.+|.+.|.+++|+| + ..|||||.||+|+||+...
T Consensus       296 ~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~  335 (345)
T 3fm0_A          296 AHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQR  335 (345)
T ss_dssp             EEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC
T ss_pred             eeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecC
Confidence             22368999999999987 3 4899999999999999753

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=1.1e-42  Score=311.07  Aligned_cols=283  Identities=23%  Similarity=0.353  Sum_probs=223.4

Q ss_pred             CCCCcCCceeeccC-----C--CCCEEEEEecCCeEEEEcCC--------CeEEEEeeccCCceEEEEEeecCCCceEEE
Q 036314           19 EPSLHDDWVSAVDG-----S--NPGFILTGCYDNLGRVWKAG--------GVCTHILEGHCGAVSSVNIIKSDGLKYVTV   83 (347)
Q Consensus        19 ~~~~h~~~v~~~~~-----~--~~~~l~sg~~d~~i~iw~~~--------~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l   83 (347)
                      ...+|++.|+++++     +  ++.+|||||.|++|++||..        +.....+.+|...|.+++|+|++    .+|
T Consensus        16 ~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~----~~l   91 (343)
T 2xzm_R           16 ILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQEN----CFA   91 (343)
T ss_dssp             EEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSST----TEE
T ss_pred             eeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCC----CEE
Confidence            35689999999987     4  45699999999999999963        24567899999999999999854    368


Q ss_pred             EEccCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeec
Q 036314           84 ATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKR  163 (347)
Q Consensus        84 ~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~  163 (347)
                      ++++.|++|++||+.+++         .+..+.+|..+|.+++|+|++++|++++.|++|++||+.....          
T Consensus        92 ~s~s~D~~v~lwd~~~~~---------~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~----------  152 (343)
T 2xzm_R           92 ISSSWDKTLRLWDLRTGT---------TYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECK----------  152 (343)
T ss_dssp             EEEETTSEEEEEETTSSC---------EEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEE----------
T ss_pred             EEEcCCCcEEEEECCCCc---------EEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCce----------
Confidence            999999999999997654         4567889999999999999999999999999999999863100          


Q ss_pred             cCCCccccccccccccccccCCccceEEEEeC-CC----------CeEEEEecCCcEEEEECCCCceeeeee-eCeeeEE
Q 036314          164 KGNNQVEEPQLEGEAISTLVGHTQCVSSVVWP-QQ----------ETIYSASWDHSVRTWDVEMGKDLSDIF-CGKALNC  231 (347)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~----------~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~~~  231 (347)
                                   .......+|...|.++.|. ++          .+|++++.|++|++||.. ......+. +...+.+
T Consensus       153 -------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~h~~~v~~  218 (343)
T 2xzm_R          153 -------------FSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN-FQIRYTFKAHESNVNH  218 (343)
T ss_dssp             -------------EECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT-TEEEEEEECCSSCEEE
T ss_pred             -------------eeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC-CceeEEEcCccccceE
Confidence                         0011234688889999884 33          589999999999999943 44444443 3457899


Q ss_pred             EEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccce--
Q 036314          232 IDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLS--  309 (347)
Q Consensus       232 ~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~--  309 (347)
                      ++++|+ +.+|++|+.|+.|++||++....  +...+ .+...|.+++|+|++. +| +++.|+.|++||+.+++...  
T Consensus       219 ~~~s~~-g~~l~sgs~dg~v~iwd~~~~~~--~~~~~-~~~~~v~~v~~sp~~~-~l-a~~~d~~v~iw~~~~~~~~~~~  292 (343)
T 2xzm_R          219 LSISPN-GKYIATGGKDKKLLIWDILNLTY--PQREF-DAGSTINQIAFNPKLQ-WV-AVGTDQGVKIFNLMTQSKAPVC  292 (343)
T ss_dssp             EEECTT-SSEEEEEETTCEEEEEESSCCSS--CSEEE-ECSSCEEEEEECSSSC-EE-EEEESSCEEEEESSSCCSCSEE
T ss_pred             EEECCC-CCEEEEEcCCCeEEEEECCCCcc--cceee-cCCCcEEEEEECCCCC-EE-EEECCCCEEEEEeCCCCCCceE
Confidence            999765 56889999999999999854322  23333 3556799999999974 34 45668889999998765443  


Q ss_pred             eec-----------CCCCeEEEEeecC-CCEEEEccCCceEEEeecc
Q 036314          310 VID-----------SHKDKVLCADWWR-GDSVISGGVDSKLCVSSGV  344 (347)
Q Consensus       310 ~~~-----------~h~~~v~~~~~~~-~~~l~s~s~D~~v~vw~~~  344 (347)
                      .+.           +|...|.+++|+| |++|++|+.||+|++|+..
T Consensus       293 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~  339 (343)
T 2xzm_R          293 TIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFE  339 (343)
T ss_dssp             ECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEE
T ss_pred             EeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEE
Confidence            333           7888999999986 7789999999999999853

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=1.1e-42  Score=306.80  Aligned_cols=282  Identities=24%  Similarity=0.390  Sum_probs=237.2

Q ss_pred             CCCcCCceeeccCC-CCCEEEEEecCCeEEEEcC-CCeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEec
Q 036314           20 PSLHDDWVSAVDGS-NPGFILTGCYDNLGRVWKA-GGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKF   97 (347)
Q Consensus        20 ~~~h~~~v~~~~~~-~~~~l~sg~~d~~i~iw~~-~~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~   97 (347)
                      ..+|.+.|++++++ ++.+|++|+.|++|++|+. .+.....+.+|...|.+++|+|++    ..|++++.|++|++||+
T Consensus        19 ~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~----~~l~s~~~d~~i~vwd~   94 (312)
T 4ery_A           19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS----NLLVSASDDKTLKIWDV   94 (312)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTS----SEEEEEETTSEEEEEET
T ss_pred             EcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCC----CEEEEECCCCEEEEEEC
Confidence            45899999999998 4679999999999999997 467888899999999999999854    37999999999999999


Q ss_pred             cccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCcccccccccc
Q 036314           98 DAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGE  177 (347)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (347)
                      .+++         .+..+.+|...|.+++|+|+++++++|+.|++|++||+.+.                         +
T Consensus        95 ~~~~---------~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-------------------------~  140 (312)
T 4ery_A           95 SSGK---------CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG-------------------------K  140 (312)
T ss_dssp             TTCC---------EEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC-------------------------C
T ss_pred             CCCc---------EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-------------------------E
Confidence            7654         45678899999999999999999999999999999998753                         2


Q ss_pred             ccccccCCccceEEEEe-CCCCeEEEEecCCcEEEEECCCCceeeeeee--CeeeEEEEeeCCCCcEEEEecCCCcEEEE
Q 036314          178 AISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFC--GKALNCIDIGGEGSALIAAGGSDPILRIW  254 (347)
Q Consensus       178 ~~~~~~~h~~~v~~~~~-~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~la~~~~d~~i~iw  254 (347)
                      .+..+..|...|.++.| ++++.|++++.|+.|++||+++++.+..+..  ...+.+++++++ +..+++++.|+.|++|
T Consensus       141 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~d~~i~iw  219 (312)
T 4ery_A          141 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPN-GKYILAATLDNTLKLW  219 (312)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTT-SSEEEEEETTTEEEEE
T ss_pred             EEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCC-CCEEEEEcCCCeEEEE
Confidence            34566788899999998 5778899999999999999999887766543  335788888765 4678899999999999


Q ss_pred             eCCCCCCCCCeEEecCCCCCee--EEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecCCCCeEEEEeecC-CCEEEE
Q 036314          255 DPRKPGTSAPVFQFSSHNSWIS--ACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKVLCADWWR-GDSVIS  331 (347)
Q Consensus       255 d~~~~~~~~~~~~~~~h~~~v~--~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~l~s  331 (347)
                      |++..   .....+.+|...+.  ...+++.+..+|++|+.|+.|++||+++++.+..+.+|.+.|.+++|+| +..|++
T Consensus       220 d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s  296 (312)
T 4ery_A          220 DYSKG---KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS  296 (312)
T ss_dssp             ETTTT---EEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEE
T ss_pred             ECCCC---cEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEE
Confidence            99753   34667777876532  2345544446799999999999999999998999999999999999986 667888


Q ss_pred             cc--CCceEEEeec
Q 036314          332 GG--VDSKLCVSSG  343 (347)
Q Consensus       332 ~s--~D~~v~vw~~  343 (347)
                      ++  .|++|++|..
T Consensus       297 ~~~~~d~~i~~W~~  310 (312)
T 4ery_A          297 AALENDKTIKLWKS  310 (312)
T ss_dssp             EECTTTCCEEEEEC
T ss_pred             EEccCCccEEEecC
Confidence            86  6999999974

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=9.1e-43  Score=308.66  Aligned_cols=279  Identities=24%  Similarity=0.435  Sum_probs=229.4

Q ss_pred             CCCcCCceeeccCCC--CCEEEEEecCCeEEEEcCC------CeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCc
Q 036314           20 PSLHDDWVSAVDGSN--PGFILTGCYDNLGRVWKAG------GVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQT   91 (347)
Q Consensus        20 ~~~h~~~v~~~~~~~--~~~l~sg~~d~~i~iw~~~------~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~   91 (347)
                      ..+|++.|+++++++  +++|+|||.|++|++|+..      +..++.+.+|...|.+++|++++    .+|++++.|++
T Consensus        13 l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg----~~l~s~s~D~~   88 (319)
T 3frx_A           13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADG----AYALSASWDKT   88 (319)
T ss_dssp             ECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTS----SEEEEEETTSE
T ss_pred             EccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCC----CEEEEEeCCCE
Confidence            569999999999874  3699999999999999863      23567899999999999999854    47999999999


Q ss_pred             EEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCcccc
Q 036314           92 LRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEE  171 (347)
Q Consensus        92 v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~  171 (347)
                      ||+||+.+++         .+..+.+|..+|.+++|+|++++|++|+.|++|++||+..                     
T Consensus        89 v~~wd~~~~~---------~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~---------------------  138 (319)
T 3frx_A           89 LRLWDVATGE---------TYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG---------------------  138 (319)
T ss_dssp             EEEEETTTTE---------EEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS---------------------
T ss_pred             EEEEECCCCC---------eeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC---------------------
Confidence            9999998764         4567889999999999999999999999999999999853                     


Q ss_pred             ccccccccccccCCccceEEEEeCC-------CCeEEEEecCCcEEEEECCCCceeeeeee-CeeeEEEEeeCCCCcEEE
Q 036314          172 PQLEGEAISTLVGHTQCVSSVVWPQ-------QETIYSASWDHSVRTWDVEMGKDLSDIFC-GKALNCIDIGGEGSALIA  243 (347)
Q Consensus       172 ~~~~~~~~~~~~~h~~~v~~~~~~~-------~~~l~s~s~dg~v~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~la  243 (347)
                           .++..+.+|...|.++.+.+       +..+++++.|++|++||+++.+....+.. ...+.+++++|+ +.+|+
T Consensus       139 -----~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~-g~~l~  212 (319)
T 3frx_A          139 -----QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPD-GTLIA  212 (319)
T ss_dssp             -----CEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTT-SSEEE
T ss_pred             -----CeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCC-CCEEE
Confidence                 23456778999999998732       34799999999999999998876665543 457899999765 56889


Q ss_pred             EecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceee--------cCCC
Q 036314          244 AGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVI--------DSHK  315 (347)
Q Consensus       244 ~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~--------~~h~  315 (347)
                      +++.|+.|++||++..   ..+..+.. .+.|.+++|+|++. +|++++. ..+++|+++.+..+..+        ..|.
T Consensus       213 s~~~dg~i~iwd~~~~---~~~~~~~~-~~~v~~~~~sp~~~-~la~~~~-~~i~v~~~~~~~~~~~~~~~~~~~~~~~~  286 (319)
T 3frx_A          213 SAGKDGEIMLWNLAAK---KAMYTLSA-QDEVFSLAFSPNRY-WLAAATA-TGIKVFSLDPQYLVDDLRPEFAGYSKAAE  286 (319)
T ss_dssp             EEETTCEEEEEETTTT---EEEEEEEC-CSCEEEEEECSSSS-EEEEEET-TEEEEEEETTEEEEEEECCCCTTCCGGGC
T ss_pred             EEeCCCeEEEEECCCC---cEEEEecC-CCcEEEEEEcCCCC-EEEEEcC-CCcEEEEeCcCeeeeccCccccccccCcC
Confidence            9999999999999753   33556654 46799999999985 4776664 55999999876544443        2456


Q ss_pred             CeEEEEeecC-CCEEEEccCCceEEEeecc
Q 036314          316 DKVLCADWWR-GDSVISGGVDSKLCVSSGV  344 (347)
Q Consensus       316 ~~v~~~~~~~-~~~l~s~s~D~~v~vw~~~  344 (347)
                      ..+.+++|+| |++|++|+.|++|+||+..
T Consensus       287 ~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~  316 (319)
T 3frx_A          287 PHAVSLAWSADGQTLFAGYTDNVIRVWQVM  316 (319)
T ss_dssp             CCEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred             cceeEEEECCCCCEEEEeecCceEEEEEEe
Confidence            7899999985 7789999999999999864

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=1.7e-43  Score=320.91  Aligned_cols=294  Identities=19%  Similarity=0.277  Sum_probs=234.6

Q ss_pred             CCCcCCceeeccCC-CCCEEEEEecCCeEEEEcC-CCeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEec
Q 036314           20 PSLHDDWVSAVDGS-NPGFILTGCYDNLGRVWKA-GGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKF   97 (347)
Q Consensus        20 ~~~h~~~v~~~~~~-~~~~l~sg~~d~~i~iw~~-~~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~   97 (347)
                      ..+|.+.|++++|+ ++.+|||||.|++|++||. .+.+...+.+|...|.+++|+|++    ..|++|+.|+++++|++
T Consensus        62 l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g----~~las~~~d~~v~iw~~  137 (380)
T 3iz6_a           62 LQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNG----QSVACGGLDSACSIFNL  137 (380)
T ss_dssp             ECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTS----SEEEECCSSSCCEEEEC
T ss_pred             ccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCC----CEEEEeeCCCcEEEEEC
Confidence            56899999999998 4669999999999999997 477888999999999999999854    47999999999999998


Q ss_pred             cccccccCccccceeeeeeccccceEEEEEeCCC-CEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccc
Q 036314           98 DAEELVNHPKKIRSFKILRGHKASVHSIAAETSG-NMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEG  176 (347)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~-~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (347)
                      ......  .........+.+|.+.|.+++|.|++ ..|++|+.|++|++||+.++.....    .               
T Consensus       138 ~~~~~~--~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~----~---------------  196 (380)
T 3iz6_a          138 SSQADR--DGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISI----F---------------  196 (380)
T ss_dssp             CCCSSC--CCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEE----E---------------
T ss_pred             CCCccc--cCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEE----e---------------
Confidence            753211  11122345678999999999999874 5799999999999999876432100    0               


Q ss_pred             cccccccCCccceEEEEeC--CCCeEEEEecCCcEEEEECCC-Cceeeeee-eCeeeEEEEeeCCCCcEEEEecCCCcEE
Q 036314          177 EAISTLVGHTQCVSSVVWP--QQETIYSASWDHSVRTWDVEM-GKDLSDIF-CGKALNCIDIGGEGSALIAAGGSDPILR  252 (347)
Q Consensus       177 ~~~~~~~~h~~~v~~~~~~--~~~~l~s~s~dg~v~vwd~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~la~~~~d~~i~  252 (347)
                       ......+|...|.++.|.  ++..|++++.|++|++||++. +..+..+. +...+.+++|+|+ +..|++|+.|++|+
T Consensus       197 -~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~-~~~l~s~s~D~~i~  274 (380)
T 3iz6_a          197 -GSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPD-GQRFGTGSDDGTCR  274 (380)
T ss_dssp             -CCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTT-SSEEEEECSSSCEE
T ss_pred             -ecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecC-CCeEEEEcCCCeEE
Confidence             001125788999999883  677899999999999999984 34455554 3457899999765 56889999999999


Q ss_pred             EEeCCCCCCCCCeEEecCC-------CCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceee----cCCCCeEEEE
Q 036314          253 IWDPRKPGTSAPVFQFSSH-------NSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVI----DSHKDKVLCA  321 (347)
Q Consensus       253 iwd~~~~~~~~~~~~~~~h-------~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~----~~h~~~v~~~  321 (347)
                      +||++...   .+..+..+       ...|.+++|+|++. +|++|+.||.|++||+..++.+..+    .+|.+.|.++
T Consensus       275 lwd~~~~~---~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l  350 (380)
T 3iz6_a          275 LFDMRTGH---QLQVYNREPDRNDNELPIVTSVAFSISGR-LLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCL  350 (380)
T ss_dssp             EEETTTTE---EEEEECCCCSSSCCSSCSCSEEEECSSSS-EEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEE
T ss_pred             EEECCCCc---EEEEecccccccccccCceEEEEECCCCC-EEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEE
Confidence            99998532   23344333       23589999999986 5999999999999999988777665    6899999999


Q ss_pred             eecC-CCEEEEccCCceEEEeecc
Q 036314          322 DWWR-GDSVISGGVDSKLCVSSGV  344 (347)
Q Consensus       322 ~~~~-~~~l~s~s~D~~v~vw~~~  344 (347)
                      +|+| |.+|+|||.|++|+||+..
T Consensus       351 ~~s~dg~~l~sgs~D~~i~iW~~~  374 (380)
T 3iz6_a          351 GLSSDGSALCTGSWDKNLKIWAFS  374 (380)
T ss_dssp             EECSSSSEEEEECTTSCEEEEECC
T ss_pred             EECCCCCEEEEeeCCCCEEEEecC
Confidence            9985 7789999999999999864

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=1.1e-42  Score=334.54  Aligned_cols=317  Identities=15%  Similarity=0.261  Sum_probs=235.0

Q ss_pred             CCCcCCceeeccCC-CCCEEEEEecCCeEEEEcC-CCeEEEEee-------ccCCceEEEEEeecCCCceEEEEEccCCC
Q 036314           20 PSLHDDWVSAVDGS-NPGFILTGCYDNLGRVWKA-GGVCTHILE-------GHCGAVSSVNIIKSDGLKYVTVATASKDQ   90 (347)
Q Consensus        20 ~~~h~~~v~~~~~~-~~~~l~sg~~d~~i~iw~~-~~~~~~~l~-------~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg   90 (347)
                      ..+|.+.|++++|+ ++.+|||||.|++|++||. .+.+...+.       +|.+.|.+++|+|++    ..|++++.|+
T Consensus       186 l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg----~~l~s~s~D~  261 (611)
T 1nr0_A          186 FGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDG----TKIASASADK  261 (611)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTS----SEEEEEETTS
T ss_pred             eccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCC----CEEEEEeCCC
Confidence            45899999999998 4679999999999999996 467777774       899999999999954    4799999999


Q ss_pred             cEEEEeccccccccCcc----------------------------------ccceeeeeeccccceEEEEEeCCCCEEEE
Q 036314           91 TLRLWKFDAEELVNHPK----------------------------------KIRSFKILRGHKASVHSIAAETSGNMVCS  136 (347)
Q Consensus        91 ~v~~wd~~~~~~~~~~~----------------------------------~~~~~~~~~~h~~~V~~v~~s~~~~~l~s  136 (347)
                      +|++||+.++++.....                                  ..+....+.+|..+|.+++|+|+|++|++
T Consensus       262 ~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s  341 (611)
T 1nr0_A          262 TIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFS  341 (611)
T ss_dssp             EEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred             eEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEE
Confidence            99999998765432110                                  01234466799999999999999999999


Q ss_pred             eeCCCcEEEEecCCCCCCCc-------cce-eeeccCCC------------------cccc---------cc-------c
Q 036314          137 GSWDCTISLWRTNDSDAAGN-------QVS-IKKRKGNN------------------QVEE---------PQ-------L  174 (347)
Q Consensus       137 gs~Dg~I~iwd~~~~~~~~~-------~~~-~~~~~~~~------------------~~~~---------~~-------~  174 (347)
                      ++.|++|++||+.++.....       .+. +.......                  ....         ..       .
T Consensus       342 ~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~  421 (611)
T 1nr0_A          342 ADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSA  421 (611)
T ss_dssp             EETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECT
T ss_pred             EeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeC
Confidence            99999999999876532100       000 00000000                  0000         00       0


Q ss_pred             cc----------------cccccccCCccceEEEEe-CCCCeEEEEecCCcEEEEECCCCce--eeeeeeCeeeEEEEee
Q 036314          175 EG----------------EAISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKD--LSDIFCGKALNCIDIG  235 (347)
Q Consensus       175 ~~----------------~~~~~~~~h~~~v~~~~~-~~~~~l~s~s~dg~v~vwd~~~~~~--~~~~~~~~~~~~~~~~  235 (347)
                      .+                ..+..+ .|...+.+++| |++++|++++.|++|++||+..+..  .....+...+.+++|+
T Consensus       422 dg~~~~~~~~~~v~~~~~~~~~~~-~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fs  500 (611)
T 1nr0_A          422 DGDIAVAACYKHIAIYSHGKLTEV-PISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFS  500 (611)
T ss_dssp             TSSCEEEEESSEEEEEETTEEEEE-ECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEEC
T ss_pred             CCcEEEEEeCceEEEEeCCceeee-ecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeeccCCCCceEEEEEC
Confidence            00                001111 24556788888 6888999999999999999977543  2223345578999997


Q ss_pred             CCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCc-cc-eeecC
Q 036314          236 GEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAW-PL-SVIDS  313 (347)
Q Consensus       236 ~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~-~~-~~~~~  313 (347)
                      |+ +.+|++++.|++|++||+...........+.+|...|.+++|+|++. +||||+.|++|+|||++++. .+ ..+.+
T Consensus       501 pd-g~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~-~lasgs~D~~v~lW~~~~~~~~~~~~~~~  578 (611)
T 1nr0_A          501 NN-GAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNV-RLATGSLDNSVIVWNMNKPSDHPIIIKGA  578 (611)
T ss_dssp             TT-SSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTCTTSCCEEETTS
T ss_pred             CC-CCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCC-EEEEEECCCcEEEEECCCcccccchhhcc
Confidence            65 56889999999999999864222111112345999999999999986 59999999999999998765 33 56789


Q ss_pred             C-CCeEEEEeecCCCEEEEccCCceEEEeec
Q 036314          314 H-KDKVLCADWWRGDSVISGGVDSKLCVSSG  343 (347)
Q Consensus       314 h-~~~v~~~~~~~~~~l~s~s~D~~v~vw~~  343 (347)
                      | .+.|++++|+|+.+|+|+|.|++|++|+.
T Consensus       579 h~~~~v~~v~fs~d~~l~s~~~D~~i~lW~~  609 (611)
T 1nr0_A          579 HAMSSVNSVIWLNETTIVSAGQDSNIKFWNV  609 (611)
T ss_dssp             STTSCEEEEEEEETTEEEEEETTSCEEEEEC
T ss_pred             CcccCeeEEEEcCCCEEEEecCCCCEEEEec
Confidence            9 89999999987666999999999999986

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=3e-42  Score=314.09  Aligned_cols=282  Identities=22%  Similarity=0.373  Sum_probs=228.5

Q ss_pred             CcCCceeeccCC-CCCEEEEEecCCeEEEEcC-CCeEEEEeeccCC------------------ceEEEEEeecCCCceE
Q 036314           22 LHDDWVSAVDGS-NPGFILTGCYDNLGRVWKA-GGVCTHILEGHCG------------------AVSSVNIIKSDGLKYV   81 (347)
Q Consensus        22 ~h~~~v~~~~~~-~~~~l~sg~~d~~i~iw~~-~~~~~~~l~~h~~------------------~V~~v~~~~~~~~~~~   81 (347)
                      +|...|.+++|+ ++.+||+|+ |+++++|+. .+..+..+.+|..                  .|.+++|+|++    .
T Consensus        62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg----~  136 (393)
T 1erj_A           62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDG----K  136 (393)
T ss_dssp             ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTS----S
T ss_pred             CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCC----C
Confidence            599999999998 456888876 789999996 4667767766542                  38999999854    4


Q ss_pred             EEEEccCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceee
Q 036314           82 TVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIK  161 (347)
Q Consensus        82 ~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~  161 (347)
                      .|++|+.|++|++||+.+++         ....+.+|...|.+++|+|++++|++++.|++|++||+.++.         
T Consensus       137 ~l~s~~~d~~i~iwd~~~~~---------~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~---------  198 (393)
T 1erj_A          137 FLATGAEDRLIRIWDIENRK---------IVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQ---------  198 (393)
T ss_dssp             EEEEEETTSCEEEEETTTTE---------EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE---------
T ss_pred             EEEEEcCCCeEEEEECCCCc---------EEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCe---------
Confidence            79999999999999997654         455788999999999999999999999999999999987542         


Q ss_pred             eccCCCccccccccccccccccCCccceEEEEe-C-CCCeEEEEecCCcEEEEECCCCceeeeee--------eCeeeEE
Q 036314          162 KRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW-P-QQETIYSASWDHSVRTWDVEMGKDLSDIF--------CGKALNC  231 (347)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~-~~~~l~s~s~dg~v~vwd~~~~~~~~~~~--------~~~~~~~  231 (347)
                                      +...+. +...+.+++| | ++.+|++++.|++|++||++++..+..+.        +...+.+
T Consensus       199 ----------------~~~~~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~  261 (393)
T 1erj_A          199 ----------------CSLTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYS  261 (393)
T ss_dssp             ----------------EEEEEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEE
T ss_pred             ----------------eEEEEE-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEE
Confidence                            111222 4456778877 4 67889999999999999999887766552        2346889


Q ss_pred             EEeeCCCCcEEEEecCCCcEEEEeCCCCCC---------CCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEc
Q 036314          232 IDIGGEGSALIAAGGSDPILRIWDPRKPGT---------SAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDL  302 (347)
Q Consensus       232 ~~~~~~~~~~la~~~~d~~i~iwd~~~~~~---------~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~  302 (347)
                      ++|+++ +.++++|+.|+.|++||++....         ......+.+|.+.|.+++|+|++. +|++|+.|++|++||+
T Consensus       262 v~~~~~-g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~sgs~D~~v~iwd~  339 (393)
T 1erj_A          262 VVFTRD-GQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDE-YILSGSKDRGVLFWDK  339 (393)
T ss_dssp             EEECTT-SSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGC-EEEEEETTSEEEEEET
T ss_pred             EEECCC-CCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCC-EEEEEeCCCeEEEEEC
Confidence            999765 56889999999999999875321         122456789999999999999986 5999999999999999


Q ss_pred             CCCccceeecCCCCeEEEEeecC-------CCEEEEccCCceEEEeeccc
Q 036314          303 RTAWPLSVIDSHKDKVLCADWWR-------GDSVISGGVDSKLCVSSGVS  345 (347)
Q Consensus       303 ~~~~~~~~~~~h~~~v~~~~~~~-------~~~l~s~s~D~~v~vw~~~~  345 (347)
                      ++++++..+.+|.+.|.+++|++       ++.|||||.|++|+||+...
T Consensus       340 ~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~  389 (393)
T 1erj_A          340 KSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK  389 (393)
T ss_dssp             TTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred             CCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence            99999999999999999999975       56799999999999998653

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=4.1e-42  Score=330.47  Aligned_cols=284  Identities=19%  Similarity=0.202  Sum_probs=235.8

Q ss_pred             CCCCCcCCceeeccCCC-CCEEEEEecCCeEEEEcCC---CeEEEEeeccCCceEEEEEeecCCCceEEEEEccCC----
Q 036314           18 EEPSLHDDWVSAVDGSN-PGFILTGCYDNLGRVWKAG---GVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKD----   89 (347)
Q Consensus        18 ~~~~~h~~~v~~~~~~~-~~~l~sg~~d~~i~iw~~~---~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~D----   89 (347)
                      ....+|++.|++++|++ +.+||||+.|++|||||..   ......+.+|.+.|.+++|+|++    ..|++++.+    
T Consensus        53 ~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg----~~l~~~~~~~~~~  128 (611)
T 1nr0_A           53 EIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSES----KRIAAVGEGRERF  128 (611)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTS----CEEEEEECCSSCS
T ss_pred             eEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCC----CEEEEEECCCCce
Confidence            34668999999999984 6799999999999999973   34566789999999999999954    367777765    


Q ss_pred             CcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCC-EEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCc
Q 036314           90 QTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGN-MVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQ  168 (347)
Q Consensus        90 g~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~-~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~  168 (347)
                      ++|++||...           ....+.+|...|.+++|+|++. .|++|+.|++|++||....                 
T Consensus       129 ~~v~~wd~~~-----------~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~-----------------  180 (611)
T 1nr0_A          129 GHVFLFDTGT-----------SNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPF-----------------  180 (611)
T ss_dssp             EEEEETTTCC-----------BCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTB-----------------
T ss_pred             eEEEEeeCCC-----------CcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCC-----------------
Confidence            4788888432           2345789999999999999987 6999999999999997532                 


Q ss_pred             cccccccccccccccCCccceEEEEe-CCCCeEEEEecCCcEEEEECCCCceeeeee--------eCeeeEEEEeeCCCC
Q 036314          169 VEEPQLEGEAISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIF--------CGKALNCIDIGGEGS  239 (347)
Q Consensus       169 ~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~--------~~~~~~~~~~~~~~~  239 (347)
                              +...++.+|...|.+++| |++++|++++.|++|++||+++++.+..+.        +...+.+++|+|+ +
T Consensus       181 --------~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spd-g  251 (611)
T 1nr0_A          181 --------KFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPD-G  251 (611)
T ss_dssp             --------EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTT-S
T ss_pred             --------eEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCC-C
Confidence                    335577899999999998 578899999999999999999988776662        3457899999765 5


Q ss_pred             cEEEEecCCCcEEEEeCCCCCCC----------------------------------------CCeEEecCCCCCeeEEE
Q 036314          240 ALIAAGGSDPILRIWDPRKPGTS----------------------------------------APVFQFSSHNSWISACK  279 (347)
Q Consensus       240 ~~la~~~~d~~i~iwd~~~~~~~----------------------------------------~~~~~~~~h~~~v~~v~  279 (347)
                      .+|++++.|++|++||++.....                                        .....+.+|...|.+++
T Consensus       252 ~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~  331 (611)
T 1nr0_A          252 TKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALS  331 (611)
T ss_dssp             SEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEE
T ss_pred             CEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEE
Confidence            68899999999999998742110                                        01234568999999999


Q ss_pred             eCCCCCeEEEEEeCCCcEEEEEcCCCccceee-cCCCCeEEEEeecCCCEEEEccCCceEEEeec
Q 036314          280 WHNKSWFHLISASYDGKVMLWDLRTAWPLSVI-DSHKDKVLCADWWRGDSVISGGVDSKLCVSSG  343 (347)
Q Consensus       280 ~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~l~s~s~D~~v~vw~~  343 (347)
                      |+|++. +|++++.|++|++||+++++....+ .+|...|.+++|+++..|++++.|+++++|+.
T Consensus       332 ~spdg~-~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~  395 (611)
T 1nr0_A          332 SSADGK-TLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPA  395 (611)
T ss_dssp             ECTTSS-EEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECS
T ss_pred             EeCCCC-EEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeec
Confidence            999986 5999999999999999998776655 67999999999998889999999999999984

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=7.9e-42  Score=325.70  Aligned_cols=276  Identities=26%  Similarity=0.415  Sum_probs=238.0

Q ss_pred             CCCCcCCceeeccCCC-CCEEEEEecCCeEEEEcCCCeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEec
Q 036314           19 EPSLHDDWVSAVDGSN-PGFILTGCYDNLGRVWKAGGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKF   97 (347)
Q Consensus        19 ~~~~h~~~v~~~~~~~-~~~l~sg~~d~~i~iw~~~~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~   97 (347)
                      ...+|...|+++++++ +.+|++++.|++|++||..+.....+.+|...|.+++|+|++    ..|++++.|++|++|+.
T Consensus       298 ~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g----~~l~~~~~dg~v~~~~~  373 (577)
T 2ymu_A          298 TLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDG----QTIASASDDKTVKLWNR  373 (577)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTS----SEEEEEETTSEEEEEET
T ss_pred             EEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeEEEeCCCCCEEEEEECCCC----CEEEEEeCCCEEEEEcC
Confidence            3558999999999884 579999999999999999888888899999999999999854    47999999999999996


Q ss_pred             cccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCcccccccccc
Q 036314           98 DAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGE  177 (347)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (347)
                      +.          +.+..+.+|..+|.+++|+|++++|++++.|++|++||...                          +
T Consensus       374 ~~----------~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~--------------------------~  417 (577)
T 2ymu_A          374 NG----------QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG--------------------------Q  417 (577)
T ss_dssp             TC----------CEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTC--------------------------C
T ss_pred             CC----------CEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCC--------------------------C
Confidence            43          24567889999999999999999999999999999998532                          2


Q ss_pred             ccccccCCccceEEEEe-CCCCeEEEEecCCcEEEEECCCCceeeeeee-CeeeEEEEeeCCCCcEEEEecCCCcEEEEe
Q 036314          178 AISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFC-GKALNCIDIGGEGSALIAAGGSDPILRIWD  255 (347)
Q Consensus       178 ~~~~~~~h~~~v~~~~~-~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~la~~~~d~~i~iwd  255 (347)
                      .+..+.+|...|.+++| |++++|++++.|++|++||. +++.+..+.. ...+.+++++|+ +.++++++.|+.|++||
T Consensus       418 ~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd-~~~las~~~d~~i~iw~  495 (577)
T 2ymu_A          418 LLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPD-GQTIASASDDKTVKLWN  495 (577)
T ss_dssp             EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTT-SCEEEEEETTSEEEEEE
T ss_pred             EEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCC-CCEEEEEeCCCEEEEEc
Confidence            34567789999999998 57889999999999999996 4555555543 457889999765 56889999999999999


Q ss_pred             CCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecCCCCeEEEEeecC-CCEEEEccC
Q 036314          256 PRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKVLCADWWR-GDSVISGGV  334 (347)
Q Consensus       256 ~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~l~s~s~  334 (347)
                      ..    ...+..+.+|...|.+++|+|++. +||+++.|+.|+|||. +++.+.++.+|.+.|++++|+| |++|+|+|.
T Consensus       496 ~~----~~~~~~~~~h~~~v~~l~~s~dg~-~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~  569 (577)
T 2ymu_A          496 RN----GQLLQTLTGHSSSVRGVAFSPDGQ-TIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASS  569 (577)
T ss_dssp             TT----SCEEEEEECCSSCEEEEEECTTSS-CEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSCEEEEET
T ss_pred             CC----CCEEEEEeCCCCCEEEEEEcCCCC-EEEEEECcCEEEEEeC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeC
Confidence            64    234678899999999999999986 5999999999999996 5778899999999999999985 778999999


Q ss_pred             CceEEEee
Q 036314          335 DSKLCVSS  342 (347)
Q Consensus       335 D~~v~vw~  342 (347)
                      |++|+||+
T Consensus       570 D~~i~~Wd  577 (577)
T 2ymu_A          570 DKTVKLWN  577 (577)
T ss_dssp             TSCEEEEC
T ss_pred             CCEEEEeC
Confidence            99999996

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=2.3e-41  Score=297.62  Aligned_cols=248  Identities=17%  Similarity=0.276  Sum_probs=210.8

Q ss_pred             EEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEEE
Q 036314           56 CTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVC  135 (347)
Q Consensus        56 ~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~  135 (347)
                      ..++|.+|.+.|.+++|+|++    ..|++++.||+|++||+.+++         .+..+..|..+|.+++|++++++|+
T Consensus         5 ~~~~~~~h~~~V~~~~fsp~~----~~l~s~~~dg~v~lWd~~~~~---------~~~~~~~~~~~v~~~~~~~~~~~l~   71 (304)
T 2ynn_A            5 IKKTFSNRSDRVKGIDFHPTE----PWVLTTLYSGRVELWNYETQV---------EVRSIQVTETPVRAGKFIARKNWII   71 (304)
T ss_dssp             CEEEEEEECSCEEEEEECSSS----SEEEEEETTSEEEEEETTTTE---------EEEEEECCSSCEEEEEEEGGGTEEE
T ss_pred             eEEeecCCCCceEEEEECCCC----CEEEEEcCCCcEEEEECCCCc---------eeEEeeccCCcEEEEEEeCCCCEEE
Confidence            356799999999999999954    379999999999999997653         4567789999999999999999999


Q ss_pred             EeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEe-CCCCeEEEEecCCcEEEEEC
Q 036314          136 SGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDV  214 (347)
Q Consensus       136 sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~l~s~s~dg~v~vwd~  214 (347)
                      +|+.|++|++||+.++                         +.+..+.+|...|.+++| |++++|++++.|++|++||+
T Consensus        72 s~s~d~~i~vwd~~~~-------------------------~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~  126 (304)
T 2ynn_A           72 VGSDDFRIRVFNYNTG-------------------------EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNW  126 (304)
T ss_dssp             EEETTSEEEEEETTTC-------------------------CEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEG
T ss_pred             EECCCCEEEEEECCCC-------------------------cEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEEC
Confidence            9999999999998754                         345577889999999998 57789999999999999999


Q ss_pred             CCCceeee-ee-eCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCC--CCCeEEEE
Q 036314          215 EMGKDLSD-IF-CGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHN--KSWFHLIS  290 (347)
Q Consensus       215 ~~~~~~~~-~~-~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~--~~~~~l~s  290 (347)
                      +++..... +. +...+.+++|+|.++.++++|+.|++|++||++....  ......+|...+..+.|+|  ++ .+|++
T Consensus       127 ~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~-~~l~s  203 (304)
T 2ynn_A          127 ENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP--NFTLTTGQERGVNYVDYYPLPDK-PYMIT  203 (304)
T ss_dssp             GGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSC--SEEEECCCTTCEEEEEECCSTTC-CEEEE
T ss_pred             CCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCc--cceeccCCcCcEEEEEEEEcCCC-CEEEE
Confidence            88754433 33 2346899999887778999999999999999975322  2333346667899999987  44 46999


Q ss_pred             EeCCCcEEEEEcCCCccceeecCCCCeEEEEeecC-CCEEEEccCCceEEEeecc
Q 036314          291 ASYDGKVMLWDLRTAWPLSVIDSHKDKVLCADWWR-GDSVISGGVDSKLCVSSGV  344 (347)
Q Consensus       291 ~s~D~~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~l~s~s~D~~v~vw~~~  344 (347)
                      |+.|++|++||+++++.+.++.+|.+.|.+++|+| +.+|+||+.|++|+||+..
T Consensus       204 ~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~  258 (304)
T 2ynn_A          204 ASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSS  258 (304)
T ss_dssp             EETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETT
T ss_pred             EcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECC
Confidence            99999999999999999999999999999999986 6689999999999999965

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=1.8e-40  Score=296.83  Aligned_cols=242  Identities=18%  Similarity=0.246  Sum_probs=198.9

Q ss_pred             CcCCceeeccCCCCCEEEEEecCCeEEEEcCC-CeE----EEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEe
Q 036314           22 LHDDWVSAVDGSNPGFILTGCYDNLGRVWKAG-GVC----THILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWK   96 (347)
Q Consensus        22 ~h~~~v~~~~~~~~~~l~sg~~d~~i~iw~~~-~~~----~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd   96 (347)
                      .|...|.+++|++++.|++|+.||+|||||+. +++    ...+.+|.+.|.+++|+|++    .+|++|+.|++|++||
T Consensus        80 ~~~~~v~~~~~s~d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg----~~l~sgs~d~~i~iwd  155 (344)
T 4gqb_B           80 QTEAGVADLTWVGERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSG----TQAVSGSKDICIKVWD  155 (344)
T ss_dssp             EESSCEEEEEEETTTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTS----SEEEEEETTSCEEEEE
T ss_pred             ccCCCEEEEEEeCCCeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCC----CEEEEEeCCCeEEEEE
Confidence            36678999999988899999999999999974 332    23466999999999999954    4799999999999999


Q ss_pred             ccccccccCccccceeeeeeccccceEEEEEeCCCC-EEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCcccccccc
Q 036314           97 FDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGN-MVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLE  175 (347)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~-~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (347)
                      +.+++         ++..+.+|...|.+++|++++. +|++++.|++|++||++++..                      
T Consensus       156 ~~~~~---------~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~----------------------  204 (344)
T 4gqb_B          156 LAQQV---------VLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKP----------------------  204 (344)
T ss_dssp             TTTTE---------EEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSC----------------------
T ss_pred             CCCCc---------EEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccce----------------------
Confidence            98764         5567889999999999999984 789999999999999876432                      


Q ss_pred             ccccccc--cCCccceEEEEeC--CCCeEEEEecCCcEEEEECCCCceeeeeee-CeeeEEEEeeCCCCcEEEEecCCCc
Q 036314          176 GEAISTL--VGHTQCVSSVVWP--QQETIYSASWDHSVRTWDVEMGKDLSDIFC-GKALNCIDIGGEGSALIAAGGSDPI  250 (347)
Q Consensus       176 ~~~~~~~--~~h~~~v~~~~~~--~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~la~~~~d~~  250 (347)
                         ...+  ..|...+.+++|.  ++++|++++.|++|++||+++++.+..+.. ...+.+++|+|++..+|++|+.|++
T Consensus       205 ---~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~  281 (344)
T 4gqb_B          205 ---ASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCS  281 (344)
T ss_dssp             ---EEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSC
T ss_pred             ---eeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCe
Confidence               1111  2345567888874  345789999999999999999988887764 4578999998877778999999999


Q ss_pred             EEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCC
Q 036314          251 LRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTA  305 (347)
Q Consensus       251 i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~  305 (347)
                      |+|||++..    .+..+.+|.+.|.+++|+|++.++|+||+.|++|++|++.+.
T Consensus       282 i~vwd~~~~----~~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~  332 (344)
T 4gqb_B          282 LAVLDSSLS----ELFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTE  332 (344)
T ss_dssp             EEEECTTCC----EEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC-
T ss_pred             EEEEECCCC----cEEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCC
Confidence            999998742    256788999999999999999888999999999999999764

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=2.1e-40  Score=303.59  Aligned_cols=255  Identities=27%  Similarity=0.401  Sum_probs=217.9

Q ss_pred             EEEcCCCeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeeeeccccceEEEEE
Q 036314           48 RVWKAGGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAA  127 (347)
Q Consensus        48 ~iw~~~~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~  127 (347)
                      +.|.........+.+|.+.|++++|+|++    ..|++|+.||+|++||+.+++         ...++.+|..+|.+++|
T Consensus        92 ~~~~~~~~~~~~l~gh~~~V~~~~~~p~~----~~l~s~s~Dg~i~vwd~~~~~---------~~~~l~~h~~~V~~v~~  158 (410)
T 1vyh_C           92 KEWIPRPPEKYALSGHRSPVTRVIFHPVF----SVMVSASEDATIKVWDYETGD---------FERTLKGHTDSVQDISF  158 (410)
T ss_dssp             CCCCCCSSCSCEEECCSSCEEEEEECSSS----SEEEEEESSSCEEEEETTTCC---------CCEEECCCSSCEEEEEE
T ss_pred             cccccCCCceEeecccCCcEEEEEEcCCC----CEEEEEeCCCeEEEEECCCCc---------EEEEEeccCCcEEEEEE
Confidence            34544333445688999999999999954    379999999999999998764         34578899999999999


Q ss_pred             eCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEe-CCCCeEEEEecC
Q 036314          128 ETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW-PQQETIYSASWD  206 (347)
Q Consensus       128 s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~l~s~s~d  206 (347)
                      +|++++|++|+.|++|++||+.+.                         .++..+.+|...|.++.| |+++.|++++.|
T Consensus       159 ~~~~~~l~sgs~D~~i~iwd~~~~-------------------------~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D  213 (410)
T 1vyh_C          159 DHSGKLLASCSADMTIKLWDFQGF-------------------------ECIRTMHGHDHNVSSVSIMPNGDHIVSASRD  213 (410)
T ss_dssp             CTTSSEEEEEETTSCCCEEETTSS-------------------------CEEECCCCCSSCEEEEEECSSSSEEEEEETT
T ss_pred             cCCCCEEEEEeCCCeEEEEeCCCC-------------------------ceeEEEcCCCCCEEEEEEeCCCCEEEEEeCC
Confidence            999999999999999999998653                         345677889999999998 577899999999


Q ss_pred             CcEEEEECCCCceeeeeeeC-eeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCC-
Q 036314          207 HSVRTWDVEMGKDLSDIFCG-KALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKS-  284 (347)
Q Consensus       207 g~v~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-  284 (347)
                      ++|++||++++..+..+..+ ..+.++.+.+ ++.++++|+.|+.|++||++..   .....+.+|...|.+++|+|++ 
T Consensus       214 ~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~-~g~~l~s~s~D~~v~vwd~~~~---~~~~~~~~h~~~v~~~~~~~~~~  289 (410)
T 1vyh_C          214 KTIKMWEVQTGYCVKTFTGHREWVRMVRPNQ-DGTLIASCSNDQTVRVWVVATK---ECKAELREHRHVVECISWAPESS  289 (410)
T ss_dssp             SEEEEEETTTCCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTC---CEEEEECCCSSCEEEEEECCSCG
T ss_pred             CeEEEEECCCCcEEEEEeCCCccEEEEEECC-CCCEEEEEcCCCeEEEEECCCC---ceeeEecCCCceEEEEEEcCccc
Confidence            99999999999888777643 4578888865 4568899999999999999753   3466788999999999999963 


Q ss_pred             ------------------CeEEEEEeCCCcEEEEEcCCCccceeecCCCCeEEEEeecC-CCEEEEccCCceEEEeecc
Q 036314          285 ------------------WFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKVLCADWWR-GDSVISGGVDSKLCVSSGV  344 (347)
Q Consensus       285 ------------------~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~l~s~s~D~~v~vw~~~  344 (347)
                                        ..+|++|+.|++|++||+++++++.++.+|.+.|.++.|++ |.+|++|+.|++|+||+..
T Consensus       290 ~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~  368 (410)
T 1vyh_C          290 YSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYK  368 (410)
T ss_dssp             GGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCT
T ss_pred             ccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC
Confidence                              24699999999999999999999999999999999999985 6789999999999999864

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=1.3e-39  Score=310.39  Aligned_cols=277  Identities=25%  Similarity=0.410  Sum_probs=238.2

Q ss_pred             CCCCcCCceeeccCC-CCCEEEEEecCCeEEEEcCCCeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEec
Q 036314           19 EPSLHDDWVSAVDGS-NPGFILTGCYDNLGRVWKAGGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKF   97 (347)
Q Consensus        19 ~~~~h~~~v~~~~~~-~~~~l~sg~~d~~i~iw~~~~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~   97 (347)
                      ...+|...|++++++ ++.+|++++.|+++++|+..+.....+.+|...|.+++|+|++    ..|++++.|++|++||+
T Consensus       257 ~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~~~~~~~~h~~~v~~~~~~~~~----~~l~t~~~d~~i~~w~~  332 (577)
T 2ymu_A          257 TLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDG----QTIASASDDKTVKLWNR  332 (577)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTS----SEEEEEETTSCEEEEET
T ss_pred             EEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCCcEEEEEecCCCCeEEEEECCCC----CEEEEEeCCCeEEEEeC
Confidence            355799999999988 4679999999999999999888889999999999999999854    37999999999999998


Q ss_pred             cccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCcccccccccc
Q 036314           98 DAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGE  177 (347)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (347)
                      ...          .+..+.+|..+|.+++|+|+++++++++.|++|++|+...                          .
T Consensus       333 ~~~----------~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~--------------------------~  376 (577)
T 2ymu_A          333 NGQ----------HLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG--------------------------Q  376 (577)
T ss_dssp             TSC----------EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTC--------------------------C
T ss_pred             CCC----------eeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCC--------------------------C
Confidence            643          3456788999999999999999999999999999998532                          2


Q ss_pred             ccccccCCccceEEEEe-CCCCeEEEEecCCcEEEEECCCCceeeeeee-CeeeEEEEeeCCCCcEEEEecCCCcEEEEe
Q 036314          178 AISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFC-GKALNCIDIGGEGSALIAAGGSDPILRIWD  255 (347)
Q Consensus       178 ~~~~~~~h~~~v~~~~~-~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~la~~~~d~~i~iwd  255 (347)
                      .+..+.+|...|.+++| |++++|++++.|+.|++||. +++.+..+.. ...+.+++++|+ +.++++++.|+.|++||
T Consensus       377 ~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d-~~~l~~~~~d~~v~~w~  454 (577)
T 2ymu_A          377 LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPD-DQTIASASDDKTVKLWN  454 (577)
T ss_dssp             EEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTT-SSEEEEEETTSEEEEEE
T ss_pred             EEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCC-CCEEEEEcCCCEEEEEE
Confidence            34567789999999998 57889999999999999995 4555555543 457889999765 46889999999999999


Q ss_pred             CCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecCCCCeEEEEeecC-CCEEEEccC
Q 036314          256 PRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKVLCADWWR-GDSVISGGV  334 (347)
Q Consensus       256 ~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~l~s~s~  334 (347)
                      ...    ..+..+.+|...|.+++|+|++. +|++++.|++|++||. +++.+..+.+|.+.|.+++|+| |++||+++.
T Consensus       455 ~~~----~~~~~~~~~~~~v~~~~~spd~~-~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~  528 (577)
T 2ymu_A          455 RNG----QLLQTLTGHSSSVRGVAFSPDGQ-TIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASD  528 (577)
T ss_dssp             TTS----CEEEEEECCSSCEEEEEECTTSC-EEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEET
T ss_pred             CCC----CEEEEEcCCCCCEEEEEEcCCCC-EEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEEC
Confidence            642    34677889999999999999986 5999999999999996 5778889999999999999985 778999999


Q ss_pred             CceEEEeec
Q 036314          335 DSKLCVSSG  343 (347)
Q Consensus       335 D~~v~vw~~  343 (347)
                      |++|+||+-
T Consensus       529 dg~v~lwd~  537 (577)
T 2ymu_A          529 DKTVKLWNR  537 (577)
T ss_dssp             TSEEEEECT
T ss_pred             cCEEEEEeC
Confidence            999999984

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=5.3e-40  Score=291.16  Aligned_cols=254  Identities=22%  Similarity=0.289  Sum_probs=211.8

Q ss_pred             CeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCE
Q 036314           54 GVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNM  133 (347)
Q Consensus        54 ~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~  133 (347)
                      +...+.+.+|.+.|.+++|+++...++..|+||+.|++||+|++..++.       .....+.+|..+|.+++|++++.+
T Consensus        22 g~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~-------~~~~~l~gh~~~v~~~~~~~~~~~   94 (321)
T 3ow8_A           22 GILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERL-------DLQWSLEGHQLGVVSVDISHTLPI   94 (321)
T ss_dssp             EEEEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEE-------EEEEEECCCSSCEEEEEECSSSSE
T ss_pred             hheeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCe-------eeeeeeccCCCCEEEEEECCCCCE
Confidence            4455677899999999999885433455899999999999999875432       234467899999999999999999


Q ss_pred             EEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEe-CCCCeEEEEecCCcEEEE
Q 036314          134 VCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTW  212 (347)
Q Consensus       134 l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~l~s~s~dg~v~vw  212 (347)
                      +++++.|++|++||+.++                         +.+..+..|...+.+++| |++++|++++.|+.|++|
T Consensus        95 l~s~s~D~~i~lWd~~~~-------------------------~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~  149 (321)
T 3ow8_A           95 AASSSLDAHIRLWDLENG-------------------------KQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIF  149 (321)
T ss_dssp             EEEEETTSEEEEEETTTT-------------------------EEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEE
T ss_pred             EEEEeCCCcEEEEECCCC-------------------------CEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEE
Confidence            999999999999998753                         234455667777888888 678899999999999999


Q ss_pred             ECCCCceeeeeee-CeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEE
Q 036314          213 DVEMGKDLSDIFC-GKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISA  291 (347)
Q Consensus       213 d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~  291 (347)
                      |+++++....+.. ...+.+++++|+ +.+|++|+.|+.|++||++..   ..+..+.+|...|.+++|+|++. +|++|
T Consensus       150 ~~~~~~~~~~~~~~~~~v~~~~~spd-g~~lasg~~dg~i~iwd~~~~---~~~~~~~~h~~~v~~l~~spd~~-~l~s~  224 (321)
T 3ow8_A          150 GVESGKKEYSLDTRGKFILSIAYSPD-GKYLASGAIDGIINIFDIATG---KLLHTLEGHAMPIRSLTFSPDSQ-LLVTA  224 (321)
T ss_dssp             ETTTCSEEEEEECSSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTT---EEEEEECCCSSCCCEEEECTTSC-EEEEE
T ss_pred             EcCCCceeEEecCCCceEEEEEECCC-CCEEEEEcCCCeEEEEECCCC---cEEEEEcccCCceeEEEEcCCCC-EEEEE
Confidence            9999887766654 346889999765 568899999999999999753   34678899999999999999986 69999


Q ss_pred             eCCCcEEEEEcCCCccceeecCCCCeEEEEeecC-CCEEEEccCCceEEEeecc
Q 036314          292 SYDGKVMLWDLRTAWPLSVIDSHKDKVLCADWWR-GDSVISGGVDSKLCVSSGV  344 (347)
Q Consensus       292 s~D~~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~l~s~s~D~~v~vw~~~  344 (347)
                      +.|++|++||+++++...++.+|.+.|.+++|+| +.+|++++.|++|+||+..
T Consensus       225 s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~  278 (321)
T 3ow8_A          225 SDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVG  278 (321)
T ss_dssp             CTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             cCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCC
Confidence            9999999999999988899999999999999985 6789999999999999864

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=9.6e-40  Score=296.89  Aligned_cols=296  Identities=17%  Similarity=0.206  Sum_probs=239.4

Q ss_pred             CCCCCcCCceeeccCCCCCEEEEEecCCeEEEEcCC-Ce------EEEEeeccCCceEEEEEeecCCCce---EEEEEcc
Q 036314           18 EEPSLHDDWVSAVDGSNPGFILTGCYDNLGRVWKAG-GV------CTHILEGHCGAVSSVNIIKSDGLKY---VTVATAS   87 (347)
Q Consensus        18 ~~~~~h~~~v~~~~~~~~~~l~sg~~d~~i~iw~~~-~~------~~~~l~~h~~~V~~v~~~~~~~~~~---~~l~s~s   87 (347)
                      ....+|.+.|+++++++ .+|++|+.||+|++|+.. +.      ....+.+|...|.++.|+++...++   ..|++++
T Consensus        10 ~~~~~h~~~i~~~~~~~-~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~   88 (397)
T 1sq9_A           10 NAGKAHDADIFSVSACN-SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTS   88 (397)
T ss_dssp             EESSCSSSCEEEEEECS-SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEE
T ss_pred             hhhhhhhcCeEEEEecC-CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEc
Confidence            44678999999999977 899999999999999975 33      5778889999999999998500013   5799999


Q ss_pred             CCCcEEEEeccccccccCccccceeeeeecc-----ccceEEEEEe----CCCCE-EEEeeCCCcEEEEecCC------C
Q 036314           88 KDQTLRLWKFDAEELVNHPKKIRSFKILRGH-----KASVHSIAAE----TSGNM-VCSGSWDCTISLWRTND------S  151 (347)
Q Consensus        88 ~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h-----~~~V~~v~~s----~~~~~-l~sgs~Dg~I~iwd~~~------~  151 (347)
                      .|++|++|++..++..    .......+..|     ...|.+++|+    |++++ |++++.|+.|++||+..      .
T Consensus        89 ~dg~i~iw~~~~~~~~----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  164 (397)
T 1sq9_A           89 FSGDLLFYRITREDET----KKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNS  164 (397)
T ss_dssp             TTSCEEEEEEEECTTT----CCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHH
T ss_pred             CCCCEEEEEccCCccc----ccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccccccc
Confidence            9999999999865420    01124567778     5999999999    99999 99999999999999875      2


Q ss_pred             CCCCccceeeeccCCCccccccccccccccc-------cCCccceEEEEe-CCCCeEEEEecCCcEEEEECCCCceeeee
Q 036314          152 DAAGNQVSIKKRKGNNQVEEPQLEGEAISTL-------VGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDI  223 (347)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~h~~~v~~~~~-~~~~~l~s~s~dg~v~vwd~~~~~~~~~~  223 (347)
                      ....                    ......+       ..|...+.++.| +++ .+++++.|+.|++||+++++.+..+
T Consensus       165 ~~~~--------------------~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~  223 (397)
T 1sq9_A          165 LTLN--------------------WSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNF  223 (397)
T ss_dssp             TTTC--------------------CCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEE
T ss_pred             ceee--------------------ccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEE
Confidence            1100                    0000022       447888999998 466 9999999999999999998888777


Q ss_pred             ee-------CeeeEEEEeeCCCCcEEEEecCC---CcEEEEeCCCCCCCCCeEEecC-------------CCCCeeEEEe
Q 036314          224 FC-------GKALNCIDIGGEGSALIAAGGSD---PILRIWDPRKPGTSAPVFQFSS-------------HNSWISACKW  280 (347)
Q Consensus       224 ~~-------~~~~~~~~~~~~~~~~la~~~~d---~~i~iwd~~~~~~~~~~~~~~~-------------h~~~v~~v~~  280 (347)
                      ..       ...+.+++++++ +.+|++++.|   +.|++||++..   ..+..+.+             |...|.+++|
T Consensus       224 ~~~~~h~~~~~~i~~i~~~~~-~~~l~~~~~d~~~g~i~i~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  299 (397)
T 1sq9_A          224 ESQHSMINNSNSIRSVKFSPQ-GSLLAIAHDSNSFGCITLYETEFG---ERIGSLSVPTHSSQASLGEFAHSSWVMSLSF  299 (397)
T ss_dssp             ECCC---CCCCCEEEEEECSS-TTEEEEEEEETTEEEEEEEETTTC---CEEEEECBC--------CCBSBSSCEEEEEE
T ss_pred             eccccccccCCccceEEECCC-CCEEEEEecCCCCceEEEEECCCC---cccceeccCcccccccccccccCCcEEEEEE
Confidence            65       567899999765 5688899999   99999999753   34677777             9999999999


Q ss_pred             CCCCCeEEEEEeCCCcEEEEEcCCCccceeec------CC---------------CCeEEEEeecCC-----------CE
Q 036314          281 HNKSWFHLISASYDGKVMLWDLRTAWPLSVID------SH---------------KDKVLCADWWRG-----------DS  328 (347)
Q Consensus       281 s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~------~h---------------~~~v~~~~~~~~-----------~~  328 (347)
                      +|++. +|++++.|+.|++||+++++.+..+.      +|               ...|.+++|+++           ++
T Consensus       300 ~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~  378 (397)
T 1sq9_A          300 NDSGE-TLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNES  378 (397)
T ss_dssp             CSSSS-EEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCE
T ss_pred             CCCCC-EEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccce
Confidence            99986 59999999999999999999888888      88               999999999864           68


Q ss_pred             EEEccCCceEEEeecc
Q 036314          329 VISGGVDSKLCVSSGV  344 (347)
Q Consensus       329 l~s~s~D~~v~vw~~~  344 (347)
                      |++++.|+.|+||+..
T Consensus       379 l~s~~~dg~i~iw~~~  394 (397)
T 1sq9_A          379 LCCVCLDRSIRWFREA  394 (397)
T ss_dssp             EEEEETTTEEEEEEEE
T ss_pred             EEEecCCCcEEEEEcC
Confidence            9999999999999864

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=9.8e-40  Score=292.93  Aligned_cols=287  Identities=16%  Similarity=0.208  Sum_probs=232.3

Q ss_pred             CCCcCCceeeccCCC-----CCEEEEEecCCeEEEEcCC-CeEEEEeec-----cCCceEEEEEeecCCCceEEEEEccC
Q 036314           20 PSLHDDWVSAVDGSN-----PGFILTGCYDNLGRVWKAG-GVCTHILEG-----HCGAVSSVNIIKSDGLKYVTVATASK   88 (347)
Q Consensus        20 ~~~h~~~v~~~~~~~-----~~~l~sg~~d~~i~iw~~~-~~~~~~l~~-----h~~~V~~v~~~~~~~~~~~~l~s~s~   88 (347)
                      ..+|...|++++|++     ...+++++.++.|++|+.. +..+..+..     |...|.+++|+++...++..|++++.
T Consensus        14 ~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~   93 (366)
T 3k26_A           14 KEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGS   93 (366)
T ss_dssp             ECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEET
T ss_pred             ecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecC
Confidence            448999999999984     3467777778899999975 544444443     56789999999975433568999999


Q ss_pred             CCcEEEEeccccccccCccccceeeeeeccccceEEEEEeC-CCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCC
Q 036314           89 DQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAET-SGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNN  167 (347)
Q Consensus        89 Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~-~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~  167 (347)
                      ||+|++||+.+++         .+..+.+|..+|.+++|+| ++++|++++.|++|++||+.+..               
T Consensus        94 dg~i~v~d~~~~~---------~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~---------------  149 (366)
T 3k26_A           94 RGIIRIINPITMQ---------CIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDT---------------  149 (366)
T ss_dssp             TCEEEEECTTTCC---------EEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTE---------------
T ss_pred             CCEEEEEEchhce---------EeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCe---------------
Confidence            9999999987654         4566789999999999999 89999999999999999987532               


Q ss_pred             ccccccccccccccc---cCCccceEEEEe-CCCCeEEEEecCCcEEEEECCCCceeeeee-------------------
Q 036314          168 QVEEPQLEGEAISTL---VGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIF-------------------  224 (347)
Q Consensus       168 ~~~~~~~~~~~~~~~---~~h~~~v~~~~~-~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~-------------------  224 (347)
                                .+..+   .+|...|.++.| ++++.|++++.|+.|++||+++++....+.                   
T Consensus       150 ----------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (366)
T 3k26_A          150 ----------LVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKI  219 (366)
T ss_dssp             ----------EEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEE
T ss_pred             ----------EEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceee
Confidence                      12233   679999999998 577899999999999999998775443222                   


Q ss_pred             ----------eCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCC-----------CCCeEEecCCCCCeeEEEeCCC
Q 036314          225 ----------CGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGT-----------SAPVFQFSSHNSWISACKWHNK  283 (347)
Q Consensus       225 ----------~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~-----------~~~~~~~~~h~~~v~~v~~s~~  283 (347)
                                ....+.++.+.   +.++++++.|+.|++||++....           ...+..+.+|...|.+++|+|+
T Consensus       220 ~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  296 (366)
T 3k26_A          220 HFPDFSTRDIHRNYVDCVRWL---GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMD  296 (366)
T ss_dssp             CCCSEEECSSCSSCCCEEEEE---TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEEC
T ss_pred             ccCccccccCCcceEEEEEEc---CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCC
Confidence                      34467888886   35889999999999999875321           0235677889999999999999


Q ss_pred             --CCeEEEEEeCCCcEEEEEcCCCccce----eecCC--CCeEEEEeecC-CCEEEEccCCceEEEeecc
Q 036314          284 --SWFHLISASYDGKVMLWDLRTAWPLS----VIDSH--KDKVLCADWWR-GDSVISGGVDSKLCVSSGV  344 (347)
Q Consensus       284 --~~~~l~s~s~D~~i~lwd~~~~~~~~----~~~~h--~~~v~~~~~~~-~~~l~s~s~D~~v~vw~~~  344 (347)
                        +. +|++|+.||.|++||++++++..    .+.+|  .+.|.+++|++ +++|++++.||+|+||+..
T Consensus       297 ~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~  365 (366)
T 3k26_A          297 FWQK-MLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL  365 (366)
T ss_dssp             TTSS-EEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             CCCc-EEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence              75 69999999999999999886544    67777  79999999985 7789999999999999864

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=6.1e-39  Score=285.24  Aligned_cols=281  Identities=25%  Similarity=0.407  Sum_probs=227.8

Q ss_pred             CCCcCCceeeccCCC--CCEEEEEecCCeEEEEcCC------CeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCc
Q 036314           20 PSLHDDWVSAVDGSN--PGFILTGCYDNLGRVWKAG------GVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQT   91 (347)
Q Consensus        20 ~~~h~~~v~~~~~~~--~~~l~sg~~d~~i~iw~~~------~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~   91 (347)
                      +.||++.|+++++++  +++|||||.|++|++||+.      +.+.+.+.+|...|.++.|+|++    ..|++++.|+.
T Consensus        34 L~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg----~~l~s~~~d~~  109 (340)
T 4aow_A           34 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDG----QFALSGSWDGT  109 (340)
T ss_dssp             ECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTS----SEEEEEETTSE
T ss_pred             ECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCC----CEEEEEccccc
Confidence            568999999999984  4699999999999999963      24567899999999999999854    47999999999


Q ss_pred             EEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCcccc
Q 036314           92 LRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEE  171 (347)
Q Consensus        92 v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~  171 (347)
                      |++|+.....         .......+...+..+.+++++++|++++.|+.+++||+....                   
T Consensus       110 i~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~-------------------  161 (340)
T 4aow_A          110 LRLWDLTTGT---------TTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVC-------------------  161 (340)
T ss_dssp             EEEEETTTTE---------EEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCE-------------------
T ss_pred             ceEEeecccc---------eeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCc-------------------
Confidence            9999987543         334456678888899999999999999999999999976421                   


Q ss_pred             ccccccccccccCCccceEEEEeC---CCCeEEEEecCCcEEEEECCCCceeeeeee-CeeeEEEEeeCCCCcEEEEecC
Q 036314          172 PQLEGEAISTLVGHTQCVSSVVWP---QQETIYSASWDHSVRTWDVEMGKDLSDIFC-GKALNCIDIGGEGSALIAAGGS  247 (347)
Q Consensus       172 ~~~~~~~~~~~~~h~~~v~~~~~~---~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~la~~~~  247 (347)
                           .....+.+|...+..+.|.   ....+++++.|++|++||+++++.+..+.. ...+.+++++|+ +.+|++|+.
T Consensus       162 -----~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~-~~~l~s~s~  235 (340)
T 4aow_A          162 -----KYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPD-GSLCASGGK  235 (340)
T ss_dssp             -----EEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTT-SSEEEEEET
T ss_pred             -----eEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCC-CCEEEEEeC
Confidence                 1223456788889988874   234688999999999999999887776653 457899999765 568899999


Q ss_pred             CCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceee---------cCCCCeE
Q 036314          248 DPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVI---------DSHKDKV  318 (347)
Q Consensus       248 d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~---------~~h~~~v  318 (347)
                      |+.|++||++..   ..+..+. +...|.++.|+|++.  +++++.|+.|++||++++..+..+         .+|...|
T Consensus       236 Dg~i~iwd~~~~---~~~~~~~-~~~~v~~~~~~~~~~--~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v  309 (340)
T 4aow_A          236 DGQAMLWDLNEG---KHLYTLD-GGDIINALCFSPNRY--WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQC  309 (340)
T ss_dssp             TCEEEEEETTTT---EEEEEEE-CSSCEEEEEECSSSS--EEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCE
T ss_pred             CCeEEEEEeccC---ceeeeec-CCceEEeeecCCCCc--eeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCE
Confidence            999999999753   3355554 456799999999873  677888999999999876554433         4789999


Q ss_pred             EEEeecC-CCEEEEccCCceEEEeecc
Q 036314          319 LCADWWR-GDSVISGGVDSKLCVSSGV  344 (347)
Q Consensus       319 ~~~~~~~-~~~l~s~s~D~~v~vw~~~  344 (347)
                      ++++|+| |++||+|+.||+|+||+..
T Consensus       310 ~~l~~s~dg~~l~sgs~Dg~v~iW~~~  336 (340)
T 4aow_A          310 TSLAWSADGQTLFAGYTDNLVRVWQVT  336 (340)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred             EEEEECCCCCEEEEEeCCCEEEEEeCC
Confidence            9999985 7789999999999999853

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=3.3e-39  Score=314.71  Aligned_cols=283  Identities=26%  Similarity=0.370  Sum_probs=225.7

Q ss_pred             CCCcCCceeeccCCC--CCEEEEEecCCeEEEEcCC------CeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCc
Q 036314           20 PSLHDDWVSAVDGSN--PGFILTGCYDNLGRVWKAG------GVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQT   91 (347)
Q Consensus        20 ~~~h~~~v~~~~~~~--~~~l~sg~~d~~i~iw~~~------~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~   91 (347)
                      ..+|++.|++++++.  +++|+|||.|++|++|+..      +.+.+.+.+|...|.+++|++++    .+|+||+.|++
T Consensus       378 l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g----~~l~sgs~Dg~  453 (694)
T 3dm0_A          378 MRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDG----QFALSGSWDGE  453 (694)
T ss_dssp             EECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTS----SEEEEEETTSE
T ss_pred             cccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCC----CEEEEEeCCCc
Confidence            458999999999873  4699999999999999863      34567899999999999999854    47999999999


Q ss_pred             EEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCcccc
Q 036314           92 LRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEE  171 (347)
Q Consensus        92 v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~  171 (347)
                      |++||+.+++         ....+.+|...|.+++|+|++++|+||+.|++|++||+.....                  
T Consensus       454 v~vwd~~~~~---------~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~------------------  506 (694)
T 3dm0_A          454 LRLWDLAAGV---------STRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECK------------------  506 (694)
T ss_dssp             EEEEETTTTE---------EEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEE------------------
T ss_pred             EEEEECCCCc---------ceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcc------------------
Confidence            9999997654         4457889999999999999999999999999999999753200                  


Q ss_pred             ccccccccccccCCccceEEEEeCC-C--CeEEEEecCCcEEEEECCCCceeeeeee-CeeeEEEEeeCCCCcEEEEecC
Q 036314          172 PQLEGEAISTLVGHTQCVSSVVWPQ-Q--ETIYSASWDHSVRTWDVEMGKDLSDIFC-GKALNCIDIGGEGSALIAAGGS  247 (347)
Q Consensus       172 ~~~~~~~~~~~~~h~~~v~~~~~~~-~--~~l~s~s~dg~v~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~la~~~~  247 (347)
                          ........+|...|.++.|+. +  ..+++++.|++|++||+++++....+.. ...+.+++++++ +.+|++|+.
T Consensus       507 ----~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spd-g~~l~sg~~  581 (694)
T 3dm0_A          507 ----YTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPD-GSLCASGGK  581 (694)
T ss_dssp             ----EEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTT-SSEEEEEET
T ss_pred             ----eeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCC-CCEEEEEeC
Confidence                011122357889999999853 3  4799999999999999998887766653 357899999765 568899999


Q ss_pred             CCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecCCC------------
Q 036314          248 DPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHK------------  315 (347)
Q Consensus       248 d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h~------------  315 (347)
                      |+.|++||++..   ..+..+. +...|.+++|+|++. +|++ +.|+.|+|||++++..+..+..|.            
T Consensus       582 Dg~i~iwd~~~~---~~~~~~~-~~~~v~~~~~sp~~~-~l~~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  655 (694)
T 3dm0_A          582 DGVVLLWDLAEG---KKLYSLE-ANSVIHALCFSPNRY-WLCA-ATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGP  655 (694)
T ss_dssp             TSBCEEEETTTT---EEEECCB-CSSCEEEEEECSSSS-EEEE-EETTEEEEEETTTTEEEEEECCCCC-----------
T ss_pred             CCeEEEEECCCC---ceEEEec-CCCcEEEEEEcCCCc-EEEE-EcCCCEEEEECCCCCChhhhcccccccccccccccc
Confidence            999999999753   2344443 456799999999974 3554 556779999999887766554321            


Q ss_pred             -------CeEEEEeecC-CCEEEEccCCceEEEeecc
Q 036314          316 -------DKVLCADWWR-GDSVISGGVDSKLCVSSGV  344 (347)
Q Consensus       316 -------~~v~~~~~~~-~~~l~s~s~D~~v~vw~~~  344 (347)
                             -.|.+++|+| |++|+||+.||+|+||+..
T Consensus       656 ~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~  692 (694)
T 3dm0_A          656 AATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG  692 (694)
T ss_dssp             -----CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             ccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence                   1368899985 7789999999999999853

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=3.9e-39  Score=282.41  Aligned_cols=253  Identities=19%  Similarity=0.336  Sum_probs=201.3

Q ss_pred             EEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCC--CCEEE
Q 036314           58 HILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETS--GNMVC  135 (347)
Q Consensus        58 ~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~--~~~l~  135 (347)
                      ..+.+|.+.|.+++|++++    ..|++|+.|++|++||+...+       .+.+.++.+|.++|.+++|+++  +++|+
T Consensus         3 ~~~~~h~~~V~~~~~s~~g----~~las~s~D~~v~iw~~~~~~-------~~~~~~l~gH~~~V~~v~~s~~~~g~~l~   71 (297)
T 2pm7_B            3 VIANAHNEMIHDAVMDYYG----KRMATCSSDKTIKIFEVEGET-------HKLIDTLTGHEGPVWRVDWAHPKFGTILA   71 (297)
T ss_dssp             EECCSCSSCEEEEEECTTS----SEEEEEETTSCEEEEEBCSSC-------BCCCEEECCCSSCEEEEEECCGGGCSEEE
T ss_pred             eeccCCcCceEEEEECCCC----CEEEEEeCCCEEEEEecCCCC-------cEEEEEEccccCCeEEEEecCCCcCCEEE
Confidence            3578999999999999854    479999999999999986432       1345678899999999999764  89999


Q ss_pred             EeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEeCC---CCeEEEEecCCcEEEE
Q 036314          136 SGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWPQ---QETIYSASWDHSVRTW  212 (347)
Q Consensus       136 sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~~~l~s~s~dg~v~vw  212 (347)
                      ||+.|++|++||++++..                       ..+..+.+|...|.+++|.+   +.+|++++.|++|++|
T Consensus        72 s~s~D~~v~iWd~~~~~~-----------------------~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~w  128 (297)
T 2pm7_B           72 SCSYDGKVMIWKEENGRW-----------------------SQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVV  128 (297)
T ss_dssp             EEETTTEEEEEEBSSSCB-----------------------CCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEE
T ss_pred             EEcCCCEEEEEEcCCCce-----------------------EEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEE
Confidence            999999999999875321                       12345677999999999953   6789999999999999


Q ss_pred             ECCCCcee--eeee-eCeeeEEEEeeCCC------------CcEEEEecCCCcEEEEeCCCCCCC-CCeEEecCCCCCee
Q 036314          213 DVEMGKDL--SDIF-CGKALNCIDIGGEG------------SALIAAGGSDPILRIWDPRKPGTS-APVFQFSSHNSWIS  276 (347)
Q Consensus       213 d~~~~~~~--~~~~-~~~~~~~~~~~~~~------------~~~la~~~~d~~i~iwd~~~~~~~-~~~~~~~~h~~~v~  276 (347)
                      |++.+...  ..+. +...+.+++|+|..            +.+|++|+.|++|++||++..... .....+.+|.+.|.
T Consensus       129 d~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~  208 (297)
T 2pm7_B          129 EFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVR  208 (297)
T ss_dssp             EBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEE
T ss_pred             EecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceE
Confidence            99876322  2222 23468888987652            468999999999999998753211 13467889999999


Q ss_pred             EEEeCCCC--CeEEEEEeCCCcEEEEEcCCCcc---ceee--cCCCCeEEEEeecC-CCEEEEccCCceEEEeecc
Q 036314          277 ACKWHNKS--WFHLISASYDGKVMLWDLRTAWP---LSVI--DSHKDKVLCADWWR-GDSVISGGVDSKLCVSSGV  344 (347)
Q Consensus       277 ~v~~s~~~--~~~l~s~s~D~~i~lwd~~~~~~---~~~~--~~h~~~v~~~~~~~-~~~l~s~s~D~~v~vw~~~  344 (347)
                      +++|+|++  ..+||+++.|++|+|||++.+..   ...+  .+|.+.|++++|+| |++||+++.|++|+||+..
T Consensus       209 ~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~  284 (297)
T 2pm7_B          209 DVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN  284 (297)
T ss_dssp             EEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred             EEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence            99999985  46799999999999999987431   1233  57889999999985 7789999999999999854

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-38  Score=279.67  Aligned_cols=278  Identities=18%  Similarity=0.253  Sum_probs=233.5

Q ss_pred             CCCCcCCceeeccCCCCCEEEEEecCCeEEEEcCC-CeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEec
Q 036314           19 EPSLHDDWVSAVDGSNPGFILTGCYDNLGRVWKAG-GVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKF   97 (347)
Q Consensus        19 ~~~~h~~~v~~~~~~~~~~l~sg~~d~~i~iw~~~-~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~   97 (347)
                      ...+|.+.|+++++.++++|++|+.||+|++||.. +.....+..|...|.+++|+|++    ..|++++.|+.|++|++
T Consensus        13 ~l~~h~~~v~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~l~~~~~dg~i~~~~~   88 (313)
T 3odt_A           13 TLKGHDQDVRDVVAVDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEK----ELLLFGGKDTMINGVPL   88 (313)
T ss_dssp             EECCCSSCEEEEEEEETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTT----TEEEEEETTSCEEEEET
T ss_pred             HhhCCCCCcEEEEecCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCC----CEEEEecCCCeEEEEEe
Confidence            35689999999999667899999999999999975 56778899999999999999954    37999999999999998


Q ss_pred             cccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCcccccccccc
Q 036314           98 DAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGE  177 (347)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (347)
                      ....      ..+....+.+|..+|.+++|  +++++++++.|++|++||..                           .
T Consensus        89 ~~~~------~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d~~---------------------------~  133 (313)
T 3odt_A           89 FATS------GEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWKEG---------------------------S  133 (313)
T ss_dssp             TCCT------TSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETT---------------------------E
T ss_pred             eecC------CCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEcCC---------------------------c
Confidence            6532      12345567899999999999  57899999999999999821                           2


Q ss_pred             ccccccCCccceEEEEe-C-CCCeEEEEecCCcEEEEECCCCceeeeee--eCeeeEEEEeeCCCCcEEEEecCCCcEEE
Q 036314          178 AISTLVGHTQCVSSVVW-P-QQETIYSASWDHSVRTWDVEMGKDLSDIF--CGKALNCIDIGGEGSALIAAGGSDPILRI  253 (347)
Q Consensus       178 ~~~~~~~h~~~v~~~~~-~-~~~~l~s~s~dg~v~vwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~la~~~~d~~i~i  253 (347)
                      ....+..|...+.++.| + +++.+++++.|+.|++||..  .....+.  ....+.++.+.+++.  +++++.|+.|++
T Consensus       134 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~--~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~dg~i~i  209 (313)
T 3odt_A          134 LVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQND--KVIKTFSGIHNDVVRHLAVVDDGH--FISCSNDGLIKL  209 (313)
T ss_dssp             EEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETT--EEEEEECSSCSSCEEEEEEEETTE--EEEEETTSEEEE
T ss_pred             EEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecC--ceEEEEeccCcccEEEEEEcCCCe--EEEccCCCeEEE
Confidence            34456778889999887 4 78899999999999999943  3344343  345788999976653  788999999999


Q ss_pred             EeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecCCCCeEEEEeecCCCEEEEcc
Q 036314          254 WDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKVLCADWWRGDSVISGG  333 (347)
Q Consensus       254 wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s  333 (347)
                      ||++..   ..+..+.+|...|.+++|+|++ . |++++.|+.|++||+++++.+..+..|.+.|.++.|+++..+++++
T Consensus       210 ~d~~~~---~~~~~~~~~~~~i~~~~~~~~~-~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  284 (313)
T 3odt_A          210 VDMHTG---DVLRTYEGHESFVYCIKLLPNG-D-IVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGDIIVGS  284 (313)
T ss_dssp             EETTTC---CEEEEEECCSSCEEEEEECTTS-C-EEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSCEEEEE
T ss_pred             EECCch---hhhhhhhcCCceEEEEEEecCC-C-EEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCCEEEEe
Confidence            999753   3577888999999999999998 3 8999999999999999999999999999999999998766688899


Q ss_pred             CCceEEEeecc
Q 036314          334 VDSKLCVSSGV  344 (347)
Q Consensus       334 ~D~~v~vw~~~  344 (347)
                      .|+.|++|+..
T Consensus       285 ~dg~i~iw~~~  295 (313)
T 3odt_A          285 SDNLVRIFSQE  295 (313)
T ss_dssp             TTSCEEEEESC
T ss_pred             CCCcEEEEeCC
Confidence            99999999865

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=2.9e-39  Score=289.08  Aligned_cols=293  Identities=12%  Similarity=0.177  Sum_probs=227.3

Q ss_pred             CCCcCCceeeccCCC-CC-EEEEEec---CCeEEEEcCC-CeEEE-EeeccCCceEEEEEeecCCCceEEEEEccCCCcE
Q 036314           20 PSLHDDWVSAVDGSN-PG-FILTGCY---DNLGRVWKAG-GVCTH-ILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTL   92 (347)
Q Consensus        20 ~~~h~~~v~~~~~~~-~~-~l~sg~~---d~~i~iw~~~-~~~~~-~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v   92 (347)
                      ..+|...|.++++++ +. ++++|+.   |++|++||.. +.... ...+|...|.+++|+|+.. ++..|++++.||+|
T Consensus        14 ~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~l~~~~~dg~i   92 (357)
T 3i2n_A           14 QKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSL-QQRYLATGDFGGNL   92 (357)
T ss_dssp             EEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCT-TTCCEEEEETTSCE
T ss_pred             ccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCC-CCceEEEecCCCeE
Confidence            457999999999985 43 5667776   9999999975 44433 3448999999999998531 12369999999999


Q ss_pred             EEEeccccccccCccccceeeeeeccccceEEEE------EeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCC
Q 036314           93 RLWKFDAEELVNHPKKIRSFKILRGHKASVHSIA------AETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGN  166 (347)
Q Consensus        93 ~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~------~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~  166 (347)
                      ++||+..++        .....+.+|...|.+++      |++++++|++++.|++|++||+.....             
T Consensus        93 ~iwd~~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~-------------  151 (357)
T 3i2n_A           93 HIWNLEAPE--------MPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDD-------------  151 (357)
T ss_dssp             EEECTTSCS--------SCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSS-------------
T ss_pred             EEEeCCCCC--------ccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCC-------------
Confidence            999997653        13456789999999995      578999999999999999999876421             


Q ss_pred             CccccccccccccccccCC----ccceEEEE----e-CCCCeEEEEecCCcEEEEECCCCceeeeeeeCeeeEEEEeeCC
Q 036314          167 NQVEEPQLEGEAISTLVGH----TQCVSSVV----W-PQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGE  237 (347)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~h----~~~v~~~~----~-~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~  237 (347)
                                 .+..+..|    ...+.++.    | +++..+++++.|+.|++||+++++..........+.++.++|.
T Consensus       152 -----------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~  220 (357)
T 3i2n_A          152 -----------PVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRK  220 (357)
T ss_dssp             -----------CSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCS
T ss_pred             -----------cceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCC
Confidence                       11222222    23677877    3 5788999999999999999999887655556678899999772


Q ss_pred             --CCcEEEEecCCCcEEEEeCCCCCCCCC--eEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCc-------
Q 036314          238 --GSALIAAGGSDPILRIWDPRKPGTSAP--VFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAW-------  306 (347)
Q Consensus       238 --~~~~la~~~~d~~i~iwd~~~~~~~~~--~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~-------  306 (347)
                        ++..+++++.|+.|++||++.......  ...+.+|...|.+++|+|++..+|++++.||.|++||++.+.       
T Consensus       221 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  300 (357)
T 3i2n_A          221 DISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDS  300 (357)
T ss_dssp             SSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCT
T ss_pred             CCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccC
Confidence              456888999999999999875322111  113448999999999999987579999999999999998642       


Q ss_pred             ------------cceeecCCCCeEEEEeecC-CCEEE-EccCCceEEEeeccc
Q 036314          307 ------------PLSVIDSHKDKVLCADWWR-GDSVI-SGGVDSKLCVSSGVS  345 (347)
Q Consensus       307 ------------~~~~~~~h~~~v~~~~~~~-~~~l~-s~s~D~~v~vw~~~~  345 (347)
                                  .+..+.+|.+.|.+++|+| +++|+ +++.|++|+||+...
T Consensus       301 ~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~  353 (357)
T 3i2n_A          301 EGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTK  353 (357)
T ss_dssp             TSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC
T ss_pred             CCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCC
Confidence                        3556789999999999985 66787 899999999998653

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=1.1e-38  Score=288.96  Aligned_cols=282  Identities=12%  Similarity=0.119  Sum_probs=221.1

Q ss_pred             CCCcCCceeeccCCC-C-CEEEEEecCCeEEEEcCC-CeEEEEe--eccCCceEEEEEeecCCCceEEEEEccCCCcEEE
Q 036314           20 PSLHDDWVSAVDGSN-P-GFILTGCYDNLGRVWKAG-GVCTHIL--EGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRL   94 (347)
Q Consensus        20 ~~~h~~~v~~~~~~~-~-~~l~sg~~d~~i~iw~~~-~~~~~~l--~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~   94 (347)
                      ..+|...|+++++++ + .+|++|+.|++|++||.. +.....+  .+|.+.|.+++|+|.+   ...|++++.|++|++
T Consensus        69 ~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~---~~~l~s~~~d~~i~i  145 (383)
T 3ei3_B           69 ASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFN---TNQLFVSSIRGATTL  145 (383)
T ss_dssp             ECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTE---EEEEEEEETTTEEEE
T ss_pred             ccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCC---CCEEEEEeCCCEEEE
Confidence            468999999999984 4 699999999999999975 4444444  4799999999999842   357999999999999


Q ss_pred             EeccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccc
Q 036314           95 WKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQL  174 (347)
Q Consensus        95 wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (347)
                      ||+.....       ..+....+|...|.+++|+|++++|++|+.|++|++||+..                        
T Consensus       146 wd~~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~------------------------  194 (383)
T 3ei3_B          146 RDFSGSVI-------QVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDG------------------------  194 (383)
T ss_dssp             EETTSCEE-------EEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTS------------------------
T ss_pred             EECCCCce-------EEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCC------------------------
Confidence            99975321       12222334568899999999999999999999999999842                        


Q ss_pred             cccccccccCCccceEEEEeC-CCC-eEEEEecCCcEEEEECCC----CceeeeeeeCeeeEEEEeeCCCCcEEEEecCC
Q 036314          175 EGEAISTLVGHTQCVSSVVWP-QQE-TIYSASWDHSVRTWDVEM----GKDLSDIFCGKALNCIDIGGEGSALIAAGGSD  248 (347)
Q Consensus       175 ~~~~~~~~~~h~~~v~~~~~~-~~~-~l~s~s~dg~v~vwd~~~----~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~d  248 (347)
                        ..+..+.+|...|.+++|. +++ .|++++.|++|++||+++    +..+..+.+...+.++++++.++.+|++++.|
T Consensus       195 --~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d  272 (383)
T 3ei3_B          195 --HEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQR  272 (383)
T ss_dssp             --CEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESS
T ss_pred             --CEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCC
Confidence              2345677899999999994 566 799999999999999987    45555555566889999987356788999999


Q ss_pred             CcEEEEeCCCCCCCCCeEEecCCC-------C----------CeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceee
Q 036314          249 PILRIWDPRKPGTSAPVFQFSSHN-------S----------WISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVI  311 (347)
Q Consensus       249 ~~i~iwd~~~~~~~~~~~~~~~h~-------~----------~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~  311 (347)
                      +.|++||++....   ...+.+|.       .          .+..+.|+|++..   +++.|+.|++||+++++.+..+
T Consensus       273 ~~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~---s~s~d~~i~iwd~~~~~~~~~l  346 (383)
T 3ei3_B          273 NEIRVYSSYDWSK---PDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL---LLNDKRTIDIYDANSGGLVHQL  346 (383)
T ss_dssp             SEEEEEETTBTTS---CSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT---CTTCCCCEEEEETTTCCEEEEE
T ss_pred             CcEEEEECCCCcc---ccccccccccccccccceEEeccCCCCceEEEecCCccc---ccCCCCeEEEEecCCCceeeee
Confidence            9999999975432   22333332       2          2334666666642   7789999999999999988988


Q ss_pred             cC--CCCeEEEEeecC-CCEEEEccCCceEEEeecc
Q 036314          312 DS--HKDKVLCADWWR-GDSVISGGVDSKLCVSSGV  344 (347)
Q Consensus       312 ~~--h~~~v~~~~~~~-~~~l~s~s~D~~v~vw~~~  344 (347)
                      .+  |.+.+.+++|++ +++|++|+ |++|+||+..
T Consensus       347 ~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~  381 (383)
T 3ei3_B          347 RDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRE  381 (383)
T ss_dssp             CBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC
T ss_pred             cCCCCCceEEEEEEecCccEEEEec-CCcEEEEecC
Confidence            87  456777889985 77899987 9999999864

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=7.4e-39  Score=280.64  Aligned_cols=252  Identities=17%  Similarity=0.197  Sum_probs=200.9

Q ss_pred             CCCcCCceeeccCC-CCCEEEEEecCCeEEEEcCC---CeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEE
Q 036314           20 PSLHDDWVSAVDGS-NPGFILTGCYDNLGRVWKAG---GVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLW   95 (347)
Q Consensus        20 ~~~h~~~v~~~~~~-~~~~l~sg~~d~~i~iw~~~---~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~w   95 (347)
                      ..+|.+.|++++|+ ++.+|||||.|++|++|+..   ..+...|.+|.+.|.+++|+++.  ++..|+||+.|++|++|
T Consensus         5 ~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~--~g~~l~s~s~D~~v~iW   82 (297)
T 2pm7_B            5 ANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK--FGTILASCSYDGKVMIW   82 (297)
T ss_dssp             CCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGG--GCSEEEEEETTTEEEEE
T ss_pred             ccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCC--cCCEEEEEcCCCEEEEE
Confidence            46899999999998 56799999999999999974   25678899999999999997632  12479999999999999


Q ss_pred             eccccccccCccccceeeeeeccccceEEEEEeCC--CCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCcccccc
Q 036314           96 KFDAEELVNHPKKIRSFKILRGHKASVHSIAAETS--GNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQ  173 (347)
Q Consensus        96 d~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~--~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (347)
                      |+.+++.       ..+..+.+|..+|.+++|+|+  +.+|++++.|++|++||+.....                    
T Consensus        83 d~~~~~~-------~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~--------------------  135 (297)
T 2pm7_B           83 KEENGRW-------SQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGT--------------------  135 (297)
T ss_dssp             EBSSSCB-------CCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSC--------------------
T ss_pred             EcCCCce-------EEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCc--------------------
Confidence            9976531       234457789999999999998  89999999999999999875311                    


Q ss_pred             ccccccccccCCccceEEEEeCC--------------CCeEEEEecCCcEEEEECCCCc----eeeeee-eCeeeEEEEe
Q 036314          174 LEGEAISTLVGHTQCVSSVVWPQ--------------QETIYSASWDHSVRTWDVEMGK----DLSDIF-CGKALNCIDI  234 (347)
Q Consensus       174 ~~~~~~~~~~~h~~~v~~~~~~~--------------~~~l~s~s~dg~v~vwd~~~~~----~~~~~~-~~~~~~~~~~  234 (347)
                         .....+.+|...|.++.|.+              +++|++++.|++|++||++++.    ....+. +...+.+++|
T Consensus       136 ---~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~  212 (297)
T 2pm7_B          136 ---TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAW  212 (297)
T ss_dssp             ---BCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEE
T ss_pred             ---eeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEE
Confidence               01234567888999999853              3689999999999999998765    233343 2357899999


Q ss_pred             eCCC--CcEEEEecCCCcEEEEeCCCCCCCCCeEEe--cCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCC
Q 036314          235 GGEG--SALIAAGGSDPILRIWDPRKPGTSAPVFQF--SSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRT  304 (347)
Q Consensus       235 ~~~~--~~~la~~~~d~~i~iwd~~~~~~~~~~~~~--~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~  304 (347)
                      +|++  +.+||+++.|++|++||++..........+  ..|...|.+++|+|++. +||+++.|++|+||+.+.
T Consensus       213 sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~las~~~D~~v~lw~~~~  285 (297)
T 2pm7_B          213 SPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGN-VLALSGGDNKVTLWKENL  285 (297)
T ss_dssp             CCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSC-CEEEEETTSCEEEEEECT
T ss_pred             CCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCC-EEEEEcCCCcEEEEEECC
Confidence            8764  578999999999999998753211112233  56888999999999986 599999999999999863

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=9.7e-40  Score=296.18  Aligned_cols=266  Identities=21%  Similarity=0.327  Sum_probs=217.4

Q ss_pred             CeEEEEcCC-CeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeeeeccccceE
Q 036314           45 NLGRVWKAG-GVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVH  123 (347)
Q Consensus        45 ~~i~iw~~~-~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~  123 (347)
                      ..+..|+.. ..+.+.|.+|.+.|.+++|+|++.    +|+||+.|++|++||+.+++         ....+.+|...|.
T Consensus        46 ~~~~~~~~~~~~~~~~l~gH~~~V~~~~~sp~~~----~l~s~s~D~~v~iWd~~~~~---------~~~~~~~h~~~v~  112 (380)
T 3iz6_a           46 RTAVSFNPTDLVCCRTLQGHSGKVYSLDWTPEKN----WIVSASQDGRLIVWNALTSQ---------KTHAIKLHCPWVM  112 (380)
T ss_dssp             GGCCCCCCCCCEEEEEECCCSSCEEEEEECTTSS----CEEEEETTSEEEEEETTTTE---------EEEEEECCCTTCC
T ss_pred             ccccccccceeEEeecccccccEEEEEEEcCCCC----EEEEEeCCCeEEEEECCCCc---------cceEEecCCCCEE
Confidence            345567653 567889999999999999999553    69999999999999987653         4457789999999


Q ss_pred             EEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEeC-C-CCeEE
Q 036314          124 SIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWP-Q-QETIY  201 (347)
Q Consensus       124 ~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~-~~~l~  201 (347)
                      +++|+|++++|++|+.|++|++|++........                  .......+.+|...+.++.|. + +..|+
T Consensus       113 ~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~------------------~~~~~~~~~gh~~~v~~~~~~~~~~~~l~  174 (380)
T 3iz6_a          113 ECAFAPNGQSVACGGLDSACSIFNLSSQADRDG------------------NMPVSRVLTGHKGYASSCQYVPDQETRLI  174 (380)
T ss_dssp             CCEECTTSSEEEECCSSSCCEEEECCCCSSCCC------------------SSTTCCBCCCCSSCCCCCBCCSSSSSCEE
T ss_pred             EEEECCCCCEEEEeeCCCcEEEEECCCCccccC------------------CccceeeccCCCcceEEEEEecCCCCEEE
Confidence            999999999999999999999999875321100                  012244678899999888874 3 45699


Q ss_pred             EEecCCcEEEEECCCCceeeeee------eCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCe
Q 036314          202 SASWDHSVRTWDVEMGKDLSDIF------CGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWI  275 (347)
Q Consensus       202 s~s~dg~v~vwd~~~~~~~~~~~------~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v  275 (347)
                      +++.|++|++||+++++.+..+.      +...+.++.+.+.++.++++|+.|++|++||++...  .....+.+|...|
T Consensus       175 s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~--~~~~~~~~h~~~v  252 (380)
T 3iz6_a          175 TGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITS--RAVRTYHGHEGDI  252 (380)
T ss_dssp             EECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTC--CCCEEECCCSSCC
T ss_pred             EECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCC--cceEEECCcCCCe
Confidence            99999999999999988776542      234678888887778899999999999999997432  3467888999999


Q ss_pred             eEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecCCC-------CeEEEEeecC-CCEEEEccCCceEEEeecc
Q 036314          276 SACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHK-------DKVLCADWWR-GDSVISGGVDSKLCVSSGV  344 (347)
Q Consensus       276 ~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h~-------~~v~~~~~~~-~~~l~s~s~D~~v~vw~~~  344 (347)
                      .+++|+|++. +|++|+.|++|++||+++++.+..+..|.       ..|.+++|+| |.+|++|+.|++|+||+..
T Consensus       253 ~~v~~~p~~~-~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~  328 (380)
T 3iz6_a          253 NSVKFFPDGQ-RFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTL  328 (380)
T ss_dssp             CEEEECTTSS-EEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETT
T ss_pred             EEEEEecCCC-eEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECC
Confidence            9999999986 59999999999999999998887775543       2488999985 7789999999999999853

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=5.3e-38  Score=278.43  Aligned_cols=279  Identities=19%  Similarity=0.284  Sum_probs=233.9

Q ss_pred             CCcCCceeeccCCC-CCEEEEEecCCeEEEEcCCC-e---EEEEee--ccCCceEEEEEeecCCCceEEEEEccCCCcEE
Q 036314           21 SLHDDWVSAVDGSN-PGFILTGCYDNLGRVWKAGG-V---CTHILE--GHCGAVSSVNIIKSDGLKYVTVATASKDQTLR   93 (347)
Q Consensus        21 ~~h~~~v~~~~~~~-~~~l~sg~~d~~i~iw~~~~-~---~~~~l~--~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~   93 (347)
                      .+|...|+++++++ +.+|++++ |+.|++|+... .   ....+.  +|...|.+++|+|++    ..|++++.|++|+
T Consensus        48 ~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~l~~~~~d~~i~  122 (337)
T 1gxr_A           48 LNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDG----CTLIVGGEASTLS  122 (337)
T ss_dssp             ECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTS----SEEEEEESSSEEE
T ss_pred             ccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCC----CEEEEEcCCCcEE
Confidence            37999999999984 56899988 99999999742 1   223333  899999999999854    3689999999999


Q ss_pred             EEeccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCcccccc
Q 036314           94 LWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQ  173 (347)
Q Consensus        94 ~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (347)
                      +||+..++.       .....+.+|...|.+++|+|+++++++++.|+.|++||+.+.                      
T Consensus       123 ~~d~~~~~~-------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~----------------------  173 (337)
T 1gxr_A          123 IWDLAAPTP-------RIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQ----------------------  173 (337)
T ss_dssp             EEECCCC---------EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT----------------------
T ss_pred             EEECCCCCc-------ceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCC----------------------
Confidence            999976531       234567789999999999999999999999999999998753                      


Q ss_pred             ccccccccccCCccceEEEEe-CCCCeEEEEecCCcEEEEECCCCceeeeeeeCeeeEEEEeeCCCCcEEEEecCCCcEE
Q 036314          174 LEGEAISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEGSALIAAGGSDPILR  252 (347)
Q Consensus       174 ~~~~~~~~~~~h~~~v~~~~~-~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~d~~i~  252 (347)
                         +.+..+.+|...+.++.| ++++.|++++.|+.|++||+++++.+..+.....+.+++++++ +..+++++.|+.|+
T Consensus       174 ---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~~~~i~  249 (337)
T 1gxr_A          174 ---TLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPT-GEWLAVGMESSNVE  249 (337)
T ss_dssp             ---EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTT-SSEEEEEETTSCEE
T ss_pred             ---ceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecCCCceEEEEECCC-CCEEEEEcCCCcEE
Confidence               234566778899999998 5778999999999999999999988777776778899999765 46788899999999


Q ss_pred             EEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecCCCCeEEEEeecC-CCEEEE
Q 036314          253 IWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKVLCADWWR-GDSVIS  331 (347)
Q Consensus       253 iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~l~s  331 (347)
                      +||++..    ....+..|...|.+++|+|++. +|++++.|+.|++||+++++.+.. ..|...|.++.|++ +++|++
T Consensus       250 ~~~~~~~----~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~  323 (337)
T 1gxr_A          250 VLHVNKP----DKYQLHLHESCVLSLKFAYCGK-WFVSTGKDNLLNAWRTPYGASIFQ-SKESSSVLSCDISVDDKYIVT  323 (337)
T ss_dssp             EEETTSS----CEEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCCEEEE-EECSSCEEEEEECTTSCEEEE
T ss_pred             EEECCCC----CeEEEcCCccceeEEEECCCCC-EEEEecCCCcEEEEECCCCeEEEE-ecCCCcEEEEEECCCCCEEEE
Confidence            9999753    2457788999999999999986 599999999999999998876644 45888999999985 678999


Q ss_pred             ccCCceEEEeec
Q 036314          332 GGVDSKLCVSSG  343 (347)
Q Consensus       332 ~s~D~~v~vw~~  343 (347)
                      ++.|++|++|+.
T Consensus       324 ~~~dg~i~iw~~  335 (337)
T 1gxr_A          324 GSGDKKATVYEV  335 (337)
T ss_dssp             EETTSCEEEEEE
T ss_pred             ecCCCeEEEEEE
Confidence            999999999984

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-39  Score=297.56  Aligned_cols=294  Identities=16%  Similarity=0.214  Sum_probs=233.1

Q ss_pred             CCCcCCceeeccCC-CCCEEEEEecCCeEEEEcCCC-----eEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEE
Q 036314           20 PSLHDDWVSAVDGS-NPGFILTGCYDNLGRVWKAGG-----VCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLR   93 (347)
Q Consensus        20 ~~~h~~~v~~~~~~-~~~~l~sg~~d~~i~iw~~~~-----~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~   93 (347)
                      ...|...|++++++ ++.+|++|+.|++|++|+...     .....+.+|.+.|.+++|+|+++   ..|++++.|++|+
T Consensus        63 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~---~~l~s~~~dg~v~  139 (416)
T 2pm9_A           63 SLQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQD---NVLASGGNNGEIF  139 (416)
T ss_dssp             CCCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSST---TBEEEECSSSCEE
T ss_pred             EEecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCC---CEEEEEcCCCeEE
Confidence            34689999999998 567999999999999999754     47888999999999999998633   3699999999999


Q ss_pred             EEeccccccccCccccceeeeeeccccceEEEEEeCC-CCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccc
Q 036314           94 LWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETS-GNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEP  172 (347)
Q Consensus        94 ~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~-~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  172 (347)
                      +||+..++.............+.+|...|.+++|+|+ +.++++++.|++|++||+.....                   
T Consensus       140 iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~-------------------  200 (416)
T 2pm9_A          140 IWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKE-------------------  200 (416)
T ss_dssp             BCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEE-------------------
T ss_pred             EEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCc-------------------
Confidence            9999866411000011122234679999999999999 78999999999999999876421                   


Q ss_pred             cccccccccc------cCCccceEEEEeC-CC-CeEEEEecCC---cEEEEECCCC-ceeeeee--eCeeeEEEEeeCCC
Q 036314          173 QLEGEAISTL------VGHTQCVSSVVWP-QQ-ETIYSASWDH---SVRTWDVEMG-KDLSDIF--CGKALNCIDIGGEG  238 (347)
Q Consensus       173 ~~~~~~~~~~------~~h~~~v~~~~~~-~~-~~l~s~s~dg---~v~vwd~~~~-~~~~~~~--~~~~~~~~~~~~~~  238 (347)
                            +..+      .+|...+.+++|. ++ ..+++++.|+   .|++||++++ .....+.  +...+.++++++.+
T Consensus       201 ------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~  274 (416)
T 2pm9_A          201 ------VIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQD  274 (416)
T ss_dssp             ------EEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSC
T ss_pred             ------ceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCC
Confidence                  1222      2347889999985 44 5799999999   9999999986 4445554  34578999998756


Q ss_pred             CcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecC-----
Q 036314          239 SALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDS-----  313 (347)
Q Consensus       239 ~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~-----  313 (347)
                      +.++++++.|+.|++||++..   .++..+.+|...|.+++|+|++..+|++++.|+.|++||++++........     
T Consensus       275 ~~~l~s~~~dg~v~~wd~~~~---~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~  351 (416)
T 2pm9_A          275 EHLLLSSGRDNTVLLWNPESA---EQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQ  351 (416)
T ss_dssp             SSCEEEEESSSEEEEECSSSC---CEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC-------
T ss_pred             CCeEEEEeCCCCEEEeeCCCC---ccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccc
Confidence            778899999999999998753   357788899999999999999856799999999999999987654332211     


Q ss_pred             ------------------------------CCCeEEEEeecC-CCEEEEccCCceEEEeecc
Q 036314          314 ------------------------------HKDKVLCADWWR-GDSVISGGVDSKLCVSSGV  344 (347)
Q Consensus       314 ------------------------------h~~~v~~~~~~~-~~~l~s~s~D~~v~vw~~~  344 (347)
                                                    |...+.+++|++ |++||+++.|++|+||+..
T Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~  413 (416)
T 2pm9_A          352 QESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPK  413 (416)
T ss_dssp             ---------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCC
T ss_pred             cCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEec
Confidence                                          667788999985 6679999999999999864

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8e-40  Score=307.23  Aligned_cols=276  Identities=11%  Similarity=0.044  Sum_probs=203.8

Q ss_pred             EEEEecCCeEEEEcCC-CeE----EEEeeccCCceEEEEEeecCC--CceEEEEEccCCCcEEEEeccccccccC--ccc
Q 036314           38 ILTGCYDNLGRVWKAG-GVC----THILEGHCGAVSSVNIIKSDG--LKYVTVATASKDQTLRLWKFDAEELVNH--PKK  108 (347)
Q Consensus        38 l~sg~~d~~i~iw~~~-~~~----~~~l~~h~~~V~~v~~~~~~~--~~~~~l~s~s~Dg~v~~wd~~~~~~~~~--~~~  108 (347)
                      |+|++.|++|+||+.. +.+    ...+.+|.+.|.+++|+|...  .++.+||+++.||+|++||+..++....  ...
T Consensus       176 laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~  255 (524)
T 2j04_B          176 FDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMC  255 (524)
T ss_dssp             ------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECC
T ss_pred             hccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceee
Confidence            3446688999999964 322    245778899999999998521  1234799999999999999976532100  001


Q ss_pred             cceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccc
Q 036314          109 IRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQC  188 (347)
Q Consensus       109 ~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  188 (347)
                      .++...+.+|..+|.+++|+++ ..|++|+.||+|++||++++.                        .....+.+|...
T Consensus       256 ~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~------------------------~~~~~~~~H~~~  310 (524)
T 2j04_B          256 EKPSLTLSLADSLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPE------------------------VPSFYDQVHDSY  310 (524)
T ss_dssp             CSCSEEECCTTTCEEEEEESSS-SEEEEEETTSEEEEEETTBCS------------------------SCSEEEECSSSC
T ss_pred             cCceEEEEcCCCCEEEEEecCC-CeEEEEeCCCEEEEEECCCCC------------------------CceEEeeccccc
Confidence            1234467899999999999986 489999999999999987531                        123356789999


Q ss_pred             eEEE--EeCC-C-CeEEEEecCCcEEEEECCCCceeeeeeeCe---eeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCC
Q 036314          189 VSSV--VWPQ-Q-ETIYSASWDHSVRTWDVEMGKDLSDIFCGK---ALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGT  261 (347)
Q Consensus       189 v~~~--~~~~-~-~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~  261 (347)
                      |.++  +|++ + ..|+|+|.|++|+|||+++++.+..+....   .+.+++|+|++ ..+++++.|++|++||++..  
T Consensus       311 V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~-~~l~s~~~d~tv~lwd~~~~--  387 (524)
T 2j04_B          311 ILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQI-YSYIYSDGASSLRAVPSRAA--  387 (524)
T ss_dssp             EEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTT-TEEEEECSSSEEEEEETTCT--
T ss_pred             EEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCc-CeEEEeCCCCcEEEEECccc--
Confidence            9999  4654 4 689999999999999999877665554321   36788998754 46888999999999999853  


Q ss_pred             CCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCC------------------------------------
Q 036314          262 SAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTA------------------------------------  305 (347)
Q Consensus       262 ~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~------------------------------------  305 (347)
                       .....+.+|.+.|.+++|+|++. +|++|+.|++|++||+...                                    
T Consensus       388 -~~~~~l~gH~~~V~sva~Sp~g~-~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~  465 (524)
T 2j04_B          388 -FAVHPLVSRETTITAIGVSRLHP-MVLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYE  465 (524)
T ss_dssp             -TCCEEEEECSSCEEEEECCSSCC-BCEEEETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCC
T ss_pred             -ccceeeecCCCceEEEEeCCCCC-eEEEEECCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEccCCce
Confidence             23467789999999999999986 5999999999999975321                                    


Q ss_pred             --------ccceeecCCCCeEEEEeecCC----CEEEEccCCceEEEeec
Q 036314          306 --------WPLSVIDSHKDKVLCADWWRG----DSVISGGVDSKLCVSSG  343 (347)
Q Consensus       306 --------~~~~~~~~h~~~v~~~~~~~~----~~l~s~s~D~~v~vw~~  343 (347)
                              ..+.++.+|.+.|.+|+|+|.    ..+|+|+.||+|+||..
T Consensus       466 ~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l  515 (524)
T 2j04_B          466 VYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYL  515 (524)
T ss_dssp             CCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEEC
T ss_pred             ecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEc
Confidence                    112234578899999999863    37999999999999974

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.6e-39  Score=295.73  Aligned_cols=293  Identities=17%  Similarity=0.272  Sum_probs=236.4

Q ss_pred             cCCceeeccCCC-CC-EEEEE----------ecCCeEEEEcCCC-e---EEEEeeccCCceEEEEEeecCCCceEEEEEc
Q 036314           23 HDDWVSAVDGSN-PG-FILTG----------CYDNLGRVWKAGG-V---CTHILEGHCGAVSSVNIIKSDGLKYVTVATA   86 (347)
Q Consensus        23 h~~~v~~~~~~~-~~-~l~sg----------~~d~~i~iw~~~~-~---~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~   86 (347)
                      +...|.++++++ +. +|++|          +.|++|++||... .   .... ..|...|.+++|+|++.    .|+++
T Consensus        11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~----~l~~~   85 (416)
T 2pm9_A           11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIAS-LQVDSKFNDLDWSHNNK----IIAGA   85 (416)
T ss_dssp             EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCC-CCCSSCEEEEEECSSSS----CEEEE
T ss_pred             hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEE-EecCCceEEEEECCCCC----eEEEE
Confidence            445788999985 44 89999          8999999999753 2   2222 36889999999998543    68999


Q ss_pred             cCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCC-CCEEEEeeCCCcEEEEecCCCCCCCccceeeeccC
Q 036314           87 SKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETS-GNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKG  165 (347)
Q Consensus        87 s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~-~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~  165 (347)
                      +.||+|++|++....     ...+....+.+|..+|.+++|+|+ +++|++++.|++|++||+.+........       
T Consensus        86 ~~dg~v~vw~~~~~~-----~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~-------  153 (416)
T 2pm9_A           86 LDNGSLELYSTNEAN-----NAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNY-------  153 (416)
T ss_dssp             ESSSCEEEECCSSTT-----SCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTC-------
T ss_pred             ccCCeEEEeeccccc-----ccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccc-------
Confidence            999999999987521     011255678899999999999998 8999999999999999997653110000       


Q ss_pred             CCccccccccccccccccCCccceEEEEeC-C-CCeEEEEecCCcEEEEECCCCceeeeeee-------CeeeEEEEeeC
Q 036314          166 NNQVEEPQLEGEAISTLVGHTQCVSSVVWP-Q-QETIYSASWDHSVRTWDVEMGKDLSDIFC-------GKALNCIDIGG  236 (347)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~-~~~l~s~s~dg~v~vwd~~~~~~~~~~~~-------~~~~~~~~~~~  236 (347)
                               .......+.+|...|.++.|. + +..|++++.|+.|++||+++++.+..+..       ...+.++++++
T Consensus       154 ---------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  224 (416)
T 2pm9_A          154 ---------TPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHP  224 (416)
T ss_dssp             ---------CCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECS
T ss_pred             ---------cccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECC
Confidence                     000122346788899999985 4 57899999999999999999887776654       45689999988


Q ss_pred             CCCcEEEEecCCC---cEEEEeCCCCCCCCCeEEec-CCCCCeeEEEeCC-CCCeEEEEEeCCCcEEEEEcCCCccceee
Q 036314          237 EGSALIAAGGSDP---ILRIWDPRKPGTSAPVFQFS-SHNSWISACKWHN-KSWFHLISASYDGKVMLWDLRTAWPLSVI  311 (347)
Q Consensus       237 ~~~~~la~~~~d~---~i~iwd~~~~~~~~~~~~~~-~h~~~v~~v~~s~-~~~~~l~s~s~D~~i~lwd~~~~~~~~~~  311 (347)
                      ++..++++++.|+   .|++||++...  .+...+. +|...|.+++|+| ++ .+|++++.|++|++||+++++++..+
T Consensus       225 ~~~~~l~~~~~d~~~~~i~~~d~~~~~--~~~~~~~~~~~~~v~~~~~s~~~~-~~l~s~~~dg~v~~wd~~~~~~~~~~  301 (416)
T 2pm9_A          225 KNSTRVATATGSDNDPSILIWDLRNAN--TPLQTLNQGHQKGILSLDWCHQDE-HLLLSSGRDNTVLLWNPESAEQLSQF  301 (416)
T ss_dssp             SCTTEEEEEECCSSSCCCCEEETTSTT--SCSBCCCSCCSSCEEEEEECSSCS-SCEEEEESSSEEEEECSSSCCEEEEE
T ss_pred             CCCCEEEEEECCCCCceEEEEeCCCCC--CCcEEeecCccCceeEEEeCCCCC-CeEEEEeCCCCEEEeeCCCCccceee
Confidence            8777899999998   99999998642  2355677 8999999999999 55 56999999999999999999999999


Q ss_pred             cCCCCeEEEEeecC-C-CEEEEccCCceEEEeecc
Q 036314          312 DSHKDKVLCADWWR-G-DSVISGGVDSKLCVSSGV  344 (347)
Q Consensus       312 ~~h~~~v~~~~~~~-~-~~l~s~s~D~~v~vw~~~  344 (347)
                      .+|.+.|.+++|+| + .+|++++.|++|+||+..
T Consensus       302 ~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~  336 (416)
T 2pm9_A          302 PARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQ  336 (416)
T ss_dssp             ECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESC
T ss_pred             cCCCCceEEEEECCCCCCEEEEEecCCcEEEEEcc
Confidence            99999999999986 4 689999999999999975

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=7.8e-39  Score=287.79  Aligned_cols=281  Identities=15%  Similarity=0.184  Sum_probs=198.6

Q ss_pred             eccCCCCCEEEEEecCCeEEEEcCCCeEEEEeeccCCceEEEEEeecCCCceEEEEEccC------CCcEEEEecccccc
Q 036314           29 AVDGSNPGFILTGCYDNLGRVWKAGGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASK------DQTLRLWKFDAEEL  102 (347)
Q Consensus        29 ~~~~~~~~~l~sg~~d~~i~iw~~~~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~------Dg~v~~wd~~~~~~  102 (347)
                      .+++...+++++++.+...+.|+++.   ....+|+..|.+++|+|++    .+|++||.      |++|++|+...+..
T Consensus        10 g~d~g~~~~~~~~~g~~~~~~w~~p~---~~p~~H~~~V~~v~fSpDG----~~las~s~d~~~~wd~~v~~~~~~~~~~   82 (357)
T 4g56_B           10 GVDLGTENLYFQSNGSSKGSAWGRPV---TAPACMEVQIGAVRYRRDG----ALLLAASSLSSRTWGGSIWVFKDPEGAP   82 (357)
T ss_dssp             ---------------------------------CCCSEEEEEEECSSS----CEEEEEECSSSSSCCEEEEEESSCC---
T ss_pred             CCCCCccceEEecCCCccccccCCCC---CCcccccCCEEEEEECCCC----CEEEEEcCCCCccccCeEEEEECCCCCc
Confidence            34444445556666678889998642   2345799999999999954    47999998      77899998765532


Q ss_pred             ccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccc
Q 036314          103 VNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTL  182 (347)
Q Consensus       103 ~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (347)
                      .     ........+|...|.+++|+|++. +++++.||+|+|||+.++....                     ......
T Consensus        83 ~-----~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~---------------------~~~~~~  135 (357)
T 4g56_B           83 N-----ESLCTAGVQTEAGVTDVAWVSEKG-ILVASDSGAVELWEILEKESLL---------------------VNKFAK  135 (357)
T ss_dssp             C-----GGGCSEEEECSSCEEEEEEETTTE-EEEEETTSCEEEC--------C---------------------CCCEEE
T ss_pred             c-----eeEecccCCCCCCEEEEEEcCCCC-EEEEECCCEEEEeeccccceeE---------------------EEeecc
Confidence            1     112234557999999999999986 4568899999999987643210                     011234


Q ss_pred             cCCccceEEEEe-CCCCeEEEEecCCcEEEEECCCCceeeeeee-CeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCC
Q 036314          183 VGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFC-GKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPG  260 (347)
Q Consensus       183 ~~h~~~v~~~~~-~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~  260 (347)
                      .+|+..|.+++| |++++|++++.|++|++||+++++.+..+.. ...+.++++++++..++++++.|+.|++||++.+.
T Consensus       136 ~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~  215 (357)
T 4g56_B          136 YEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPK  215 (357)
T ss_dssp             CCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSS
T ss_pred             CCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCc
Confidence            579999999998 5788999999999999999999988777754 45789999988777788999999999999998643


Q ss_pred             CCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecCCCCeEEEEeecC-C-CEEEEccCCceE
Q 036314          261 TSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKVLCADWWR-G-DSVISGGVDSKL  338 (347)
Q Consensus       261 ~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~-~-~~l~s~s~D~~v  338 (347)
                       ......+..|...+.+++|+|++..+|++|+.|+.|++||+++++.+.++.+|.+.|.+++|+| + ++||+|+.|++|
T Consensus       216 -~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i  294 (357)
T 4g56_B          216 -PATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTV  294 (357)
T ss_dssp             -CBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCE
T ss_pred             -eeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEE
Confidence             2233445567788999999999877899999999999999999999999999999999999985 4 469999999999


Q ss_pred             EEeecc
Q 036314          339 CVSSGV  344 (347)
Q Consensus       339 ~vw~~~  344 (347)
                      +||+..
T Consensus       295 ~iwd~~  300 (357)
T 4g56_B          295 AVLDAD  300 (357)
T ss_dssp             EEECTT
T ss_pred             EEEECC
Confidence            999865

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=3.2e-39  Score=285.53  Aligned_cols=253  Identities=20%  Similarity=0.332  Sum_probs=194.4

Q ss_pred             EEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeC--CCCEEE
Q 036314           58 HILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAET--SGNMVC  135 (347)
Q Consensus        58 ~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~--~~~~l~  135 (347)
                      ..+.+|.+.|.+++|++++    .+|++|+.|++|++||+.+++.       ..+..+.+|..+|.+++|++  ++++|+
T Consensus         7 ~~~~~H~~~V~~v~~s~~g----~~lasgs~D~~v~lwd~~~~~~-------~~~~~l~gH~~~V~~v~~~~~~~~~~l~   75 (316)
T 3bg1_A            7 TVDTSHEDMIHDAQMDYYG----TRLATCSSDRSVKIFDVRNGGQ-------ILIADLRGHEGPVWQVAWAHPMYGNILA   75 (316)
T ss_dssp             -------CCEEEEEECGGG----CEEEEEETTTEEEEEEEETTEE-------EEEEEEECCSSCEEEEEECCGGGSSCEE
T ss_pred             eecccccCeEEEeeEcCCC----CEEEEEeCCCeEEEEEecCCCc-------EEEEEEcCCCccEEEEEeCCCCCCCEEE
Confidence            3577999999999999844    4799999999999999875431       24567889999999999975  489999


Q ss_pred             EeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEeC-C--CCeEEEEecCCcEEEE
Q 036314          136 SGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWP-Q--QETIYSASWDHSVRTW  212 (347)
Q Consensus       136 sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~--~~~l~s~s~dg~v~vw  212 (347)
                      ||+.|++|++||++++..                       .....+.+|...|.+++|. +  +..|++++.|++|++|
T Consensus        76 s~s~D~~v~iWd~~~~~~-----------------------~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lw  132 (316)
T 3bg1_A           76 SCSYDRKVIIWREENGTW-----------------------EKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLL  132 (316)
T ss_dssp             EEETTSCEEEECCSSSCC-----------------------CEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEE
T ss_pred             EEECCCEEEEEECCCCcc-----------------------eEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEE
Confidence            999999999999865311                       1234567899999999994 3  5689999999999999


Q ss_pred             ECCCCcee---eeee-eCeeeEEEEeeCCC----------------CcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCC
Q 036314          213 DVEMGKDL---SDIF-CGKALNCIDIGGEG----------------SALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHN  272 (347)
Q Consensus       213 d~~~~~~~---~~~~-~~~~~~~~~~~~~~----------------~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~  272 (347)
                      |++.+...   ..+. +...+.++.++|+.                ..+|++|+.|++|++||++......+...+.+|.
T Consensus       133 d~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~  212 (316)
T 3bg1_A          133 TYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHS  212 (316)
T ss_dssp             EECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCS
T ss_pred             ecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCC
Confidence            99875322   1111 22356677776542                3578999999999999986432223456788999


Q ss_pred             CCeeEEEeCCCC---CeEEEEEeCCCcEEEEEcCCCc----cceeecCCCCeEEEEeecC-CCEEEEccCCceEEEeecc
Q 036314          273 SWISACKWHNKS---WFHLISASYDGKVMLWDLRTAW----PLSVIDSHKDKVLCADWWR-GDSVISGGVDSKLCVSSGV  344 (347)
Q Consensus       273 ~~v~~v~~s~~~---~~~l~s~s~D~~i~lwd~~~~~----~~~~~~~h~~~v~~~~~~~-~~~l~s~s~D~~v~vw~~~  344 (347)
                      ++|.+++|+|++   ..+||+|+.|++|+|||+++..    ....+..|.+.|++++|+| +++||+++.|++|+||+..
T Consensus       213 ~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~  292 (316)
T 3bg1_A          213 DWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES  292 (316)
T ss_dssp             SCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred             CceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence            999999999986   2479999999999999998631    2345677899999999986 7789999999999999853

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=6e-38  Score=289.34  Aligned_cols=274  Identities=24%  Similarity=0.424  Sum_probs=230.6

Q ss_pred             CCCcCCceeeccCCCCCEEEEEecCCeEEEEcCC-CeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEecc
Q 036314           20 PSLHDDWVSAVDGSNPGFILTGCYDNLGRVWKAG-GVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFD   98 (347)
Q Consensus        20 ~~~h~~~v~~~~~~~~~~l~sg~~d~~i~iw~~~-~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~   98 (347)
                      ..+|...|.++++ ++++|++|+.||+|++||.. +.+...+.+|.+.|.++.|.  +    ..|++|+.||+|++||+.
T Consensus       129 ~~~~~~~v~~~~~-d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~----~~l~sg~~dg~i~vwd~~  201 (435)
T 1p22_A          129 RSETSKGVYCLQY-DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYD--E----RVIITGSSDSTVRVWDVN  201 (435)
T ss_dssp             CCSSCCCEEEEEC-CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEECC--S----SEEEEEETTSCEEEEESS
T ss_pred             ccCCCCcEEEEEE-CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEEC--C----CEEEEEcCCCeEEEEECC
Confidence            4467888999998 67899999999999999974 67888999999999999882  2    379999999999999998


Q ss_pred             ccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccc
Q 036314           99 AEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEA  178 (347)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (347)
                      +++         ....+.+|...|.+++|+  +..+++|+.|++|++||+.+....                      ..
T Consensus       202 ~~~---------~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~----------------------~~  248 (435)
T 1p22_A          202 TGE---------MLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDI----------------------TL  248 (435)
T ss_dssp             SCC---------EEEEECCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCC----------------------EE
T ss_pred             CCc---------EEEEEcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCc----------------------ee
Confidence            764         456778999999999996  459999999999999998754210                      11


Q ss_pred             cccccCCccceEEEEeCCCCeEEEEecCCcEEEEECCCCceeeeeee-CeeeEEEEeeCCCCcEEEEecCCCcEEEEeCC
Q 036314          179 ISTLVGHTQCVSSVVWPQQETIYSASWDHSVRTWDVEMGKDLSDIFC-GKALNCIDIGGEGSALIAAGGSDPILRIWDPR  257 (347)
Q Consensus       179 ~~~~~~h~~~v~~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~  257 (347)
                      ...+.+|...|.++.| +++.+++++.||+|++||+++++.+..+.. ...+.++.+.   +..+++|+.|+.|++||++
T Consensus       249 ~~~~~~~~~~v~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~g~~dg~i~iwd~~  324 (435)
T 1p22_A          249 RRVLVGHRAAVNVVDF-DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR---DRLVVSGSSDNTIRLWDIE  324 (435)
T ss_dssp             EEEECCCSSCEEEEEE-ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE---TTEEEEEETTSCEEEEETT
T ss_pred             eeEecCCCCcEEEEEe-CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeC---CCEEEEEeCCCeEEEEECC
Confidence            2456789999999998 778999999999999999999988877764 3467888874   3588999999999999997


Q ss_pred             CCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCc---------cceeecCCCCeEEEEeecCCCE
Q 036314          258 KPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAW---------PLSVIDSHKDKVLCADWWRGDS  328 (347)
Q Consensus       258 ~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~---------~~~~~~~h~~~v~~~~~~~~~~  328 (347)
                      ..   ..+..+.+|...|.+++|+  + .+|++|+.||.|++||++++.         .+..+.+|.+.|.+++| ++.+
T Consensus       325 ~~---~~~~~~~~h~~~v~~~~~~--~-~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~  397 (435)
T 1p22_A          325 CG---ACLRVLEGHEELVRCIRFD--N-KRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF-DEFQ  397 (435)
T ss_dssp             TC---CEEEEECCCSSCEEEEECC--S-SEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE-CSSC
T ss_pred             CC---CEEEEEeCCcCcEEEEEec--C-CEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe-CCCE
Confidence            53   3477889999999999993  3 369999999999999997665         57788999999999999 7888


Q ss_pred             EEEccCCceEEEeecc
Q 036314          329 VISGGVDSKLCVSSGV  344 (347)
Q Consensus       329 l~s~s~D~~v~vw~~~  344 (347)
                      |++++.||+|++|+..
T Consensus       398 l~s~s~Dg~i~iwd~~  413 (435)
T 1p22_A          398 IVSSSHDDTILIWDFL  413 (435)
T ss_dssp             EEECCSSSEEEEEC--
T ss_pred             EEEEeCCCEEEEEECC
Confidence            9999999999999864

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=1.2e-38  Score=291.92  Aligned_cols=278  Identities=14%  Similarity=0.174  Sum_probs=220.3

Q ss_pred             CceeeccCC-CCCEEEEEecCCeEEEEcCCC-eEEEEeeccCCceEEE-EEeecCCCceEEEEEccCCCcEEEEeccccc
Q 036314           25 DWVSAVDGS-NPGFILTGCYDNLGRVWKAGG-VCTHILEGHCGAVSSV-NIIKSDGLKYVTVATASKDQTLRLWKFDAEE  101 (347)
Q Consensus        25 ~~v~~~~~~-~~~~l~sg~~d~~i~iw~~~~-~~~~~l~~h~~~V~~v-~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~  101 (347)
                      ..++.++|+ ++.+|++|+.|+++++||... .....+.+|  .+..+ .|++++    ..|++++.||+|++||+..++
T Consensus        57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~--~~~~~~~~~~~~----~~l~~~~~dg~i~iwd~~~~~  130 (420)
T 3vl1_A           57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA--DYTAVDTAKLQM----RRFILGTTEGDIKVLDSNFNL  130 (420)
T ss_dssp             BCCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC--CEEEEEEECSSS----CEEEEEETTSCEEEECTTSCE
T ss_pred             ccccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC--CceEEEEEecCC----CEEEEEECCCCEEEEeCCCcc
Confidence            445578887 567999999999999999754 333345555  34444 455533    479999999999999987653


Q ss_pred             cccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCcccccccccccccc
Q 036314          102 LVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAIST  181 (347)
Q Consensus       102 ~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (347)
                               ....+.+|..+|.+++|+|++++|++|+.|++|++||+.+.                         +.+..
T Consensus       131 ---------~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~-------------------------~~~~~  176 (420)
T 3vl1_A          131 ---------QREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDG-------------------------SNPRT  176 (420)
T ss_dssp             ---------EEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC-------------------------CCCEE
T ss_pred             ---------eeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCC-------------------------cCceE
Confidence                     34456789999999999999999999999999999998754                         23456


Q ss_pred             ccCCccceEEEEe-CCCCeEEEEecCCcEEEEECCCCceeeeeee----CeeeEEEEee--------------------C
Q 036314          182 LVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFC----GKALNCIDIG--------------------G  236 (347)
Q Consensus       182 ~~~h~~~v~~~~~-~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~----~~~~~~~~~~--------------------~  236 (347)
                      +.+|...|.+++| |+++.|++++.|++|++||+++++.+..+..    ...+.++.+.                    .
T Consensus       177 ~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s  256 (420)
T 3vl1_A          177 LIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFG  256 (420)
T ss_dssp             EECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSS
T ss_pred             EcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEc
Confidence            7789999999998 6788999999999999999999887776643    1234444432                    2


Q ss_pred             CCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCcc-ceeecC-C
Q 036314          237 EGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWP-LSVIDS-H  314 (347)
Q Consensus       237 ~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~-~~~~~~-h  314 (347)
                      +++.++++++.|+.|++||++....  ......+|...|.+++|+|++..+|++|+.||.|++||+++++. +..+.+ |
T Consensus       257 ~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~  334 (420)
T 3vl1_A          257 TYGKYVIAGHVSGVITVHNVFSKEQ--TIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINE  334 (420)
T ss_dssp             CTTEEEEEEETTSCEEEEETTTCCE--EEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEEST
T ss_pred             CCCCEEEEEcCCCeEEEEECCCCce--eEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccC
Confidence            3556889999999999999975321  22333568889999999999975799999999999999998744 677776 6


Q ss_pred             CCeEEEEeecCCCEEEEccCCceEEEeecc
Q 036314          315 KDKVLCADWWRGDSVISGGVDSKLCVSSGV  344 (347)
Q Consensus       315 ~~~v~~~~~~~~~~l~s~s~D~~v~vw~~~  344 (347)
                      ...|.++.|+++++|++++.|++|++|+..
T Consensus       335 ~~~v~~~~~~~~~~l~s~~~d~~v~iw~~~  364 (420)
T 3vl1_A          335 GTPINNVYFAAGALFVSSGFDTSIKLDIIS  364 (420)
T ss_dssp             TSCEEEEEEETTEEEEEETTTEEEEEEEEC
T ss_pred             CCCceEEEeCCCCEEEEecCCccEEEEecc
Confidence            778888888888899999999999999854

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.4e-37  Score=276.50  Aligned_cols=291  Identities=14%  Similarity=0.189  Sum_probs=237.0

Q ss_pred             CCCcCCceeeccCC-CCCEEEEEecCCeEEEEcC-CCeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEec
Q 036314           20 PSLHDDWVSAVDGS-NPGFILTGCYDNLGRVWKA-GGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKF   97 (347)
Q Consensus        20 ~~~h~~~v~~~~~~-~~~~l~sg~~d~~i~iw~~-~~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~   97 (347)
                      ..+|++.|++++++ ++.+|++|+.|+.|++||. .+..+..+.+|.+.|.+++|+|++    ..|++++.||+|++||+
T Consensus        28 l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~----~~l~s~~~dg~i~iwd~  103 (369)
T 3zwl_B           28 LTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFT----KYCVTGSADYSIKLWDV  103 (369)
T ss_dssp             EECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTS----SEEEEEETTTEEEEEET
T ss_pred             EEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCC----CEEEEEeCCCeEEEEEC
Confidence            45899999999998 4679999999999999996 467888999999999999999844    37999999999999999


Q ss_pred             cccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCC-----CcEEEEecCCCCCCCccceeeeccCCCccccc
Q 036314           98 DAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWD-----CTISLWRTNDSDAAGNQVSIKKRKGNNQVEEP  172 (347)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~D-----g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  172 (347)
                      .+++         ....+. |..+|.+++|+|+++++++++.+     +.|++||+..........              
T Consensus       104 ~~~~---------~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~--------------  159 (369)
T 3zwl_B          104 SNGQ---------CVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELT--------------  159 (369)
T ss_dssp             TTCC---------EEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEE--------------
T ss_pred             CCCc---------EEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeec--------------
Confidence            8764         333444 88899999999999999999999     999999987543221110              


Q ss_pred             cccccccccccCCcc--ceEEEEe-CCCCeEEEEecCCcEEEEECCC-Cceeeeeee-CeeeEEEEeeCCCCcEEEEecC
Q 036314          173 QLEGEAISTLVGHTQ--CVSSVVW-PQQETIYSASWDHSVRTWDVEM-GKDLSDIFC-GKALNCIDIGGEGSALIAAGGS  247 (347)
Q Consensus       173 ~~~~~~~~~~~~h~~--~v~~~~~-~~~~~l~s~s~dg~v~vwd~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~la~~~~  247 (347)
                      .........+..|..  .+.++.| ++++.|++++.||.|++||+++ ...+..+.. ...+.+++++++ +..|++++.
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~  238 (369)
T 3zwl_B          160 KVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPD-LTYFITSSR  238 (369)
T ss_dssp             EECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTT-SSEEEEEET
T ss_pred             ccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCC-CCEEEEecC
Confidence            001122334455655  8899988 5778899999999999999998 555555543 457889999765 567889999


Q ss_pred             CCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCC--------------cEEEEEcCCCccceeecC
Q 036314          248 DPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDG--------------KVMLWDLRTAWPLSVIDS  313 (347)
Q Consensus       248 d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~--------------~i~lwd~~~~~~~~~~~~  313 (347)
                      |+.|++||++..   .....+. +...+.++.|+|++. ++++++.++              .+++||..+++.+..+.+
T Consensus       239 d~~i~v~d~~~~---~~~~~~~-~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~  313 (369)
T 3zwl_B          239 DTNSFLVDVSTL---QVLKKYE-TDCPLNTAVITPLKE-FIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQG  313 (369)
T ss_dssp             TSEEEEEETTTC---CEEEEEE-CSSCEEEEEECSSSS-EEEEEECCC-------------CEEEEEETTTCCEEEEEEC
T ss_pred             CceEEEEECCCC---ceeeeec-CCCCceeEEecCCCc-eEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheec
Confidence            999999999753   2344554 778899999999986 488888877              899999999999999999


Q ss_pred             CCCeEEEEeecC-CCEEEEccCCceEEEeecc
Q 036314          314 HKDKVLCADWWR-GDSVISGGVDSKLCVSSGV  344 (347)
Q Consensus       314 h~~~v~~~~~~~-~~~l~s~s~D~~v~vw~~~  344 (347)
                      |.+.|.+++|+| +++|++++.||+|+||+..
T Consensus       314 ~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~  345 (369)
T 3zwl_B          314 HFGPLNTVAISPQGTSYASGGEDGFIRLHHFE  345 (369)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSEEEEEEEC
T ss_pred             ccCcEEEEEECCCCCEEEEEcCCCeEEEEECc
Confidence            999999999985 7789999999999999864

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=8.6e-38  Score=276.67  Aligned_cols=249  Identities=24%  Similarity=0.375  Sum_probs=203.1

Q ss_pred             EEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEEE
Q 036314           56 CTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVC  135 (347)
Q Consensus        56 ~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~  135 (347)
                      +...|.+|.+.|.+++|+|.++   .+|+||+.|++|++|++...+.    ....++..+.+|...|.+++|+|++++|+
T Consensus         9 l~~~l~gH~~~V~~l~~~~~~~---~~l~s~s~D~~v~~W~~~~~~~----~~~~~~~~~~~h~~~v~~~~~s~dg~~l~   81 (319)
T 3frx_A            9 LRGTLEGHNGWVTSLATSAGQP---NLLLSASRDKTLISWKLTGDDQ----KFGVPVRSFKGHSHIVQDCTLTADGAYAL   81 (319)
T ss_dssp             EEEEECCCSSCEEEEEECSSCT---TEEEEEETTSEEEEEEEEEETT----EEEEEEEEEECCSSCEEEEEECTTSSEEE
T ss_pred             EEEEEccccceEEEEEccCCCc---cEEEEecCCccEEEecCCCCCc----cccccceEEeCCcccEEEEEECCCCCEEE
Confidence            3457899999999999998543   3799999999999999864321    11235667899999999999999999999


Q ss_pred             EeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEe-CCCCeEEEEecCCcEEEEEC
Q 036314          136 SGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDV  214 (347)
Q Consensus       136 sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~l~s~s~dg~v~vwd~  214 (347)
                      +|+.|++|++||+.++                         +.+..+.+|...|.++.| +++..|++++.|++|++||+
T Consensus        82 s~s~D~~v~~wd~~~~-------------------------~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~  136 (319)
T 3frx_A           82 SASWDKTLRLWDVATG-------------------------ETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI  136 (319)
T ss_dssp             EEETTSEEEEEETTTT-------------------------EEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEET
T ss_pred             EEeCCCEEEEEECCCC-------------------------CeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence            9999999999998753                         345677899999999998 56788999999999999999


Q ss_pred             CCCceeeeee-eCeeeEEEEeeCC-----CCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEE
Q 036314          215 EMGKDLSDIF-CGKALNCIDIGGE-----GSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHL  288 (347)
Q Consensus       215 ~~~~~~~~~~-~~~~~~~~~~~~~-----~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l  288 (347)
                      +. ..+..+. +...+.++.+.|.     +...+++++.|+.|++||++..   .....+.+|...|.+++|+|++. +|
T Consensus       137 ~~-~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~---~~~~~~~~h~~~v~~~~~sp~g~-~l  211 (319)
T 3frx_A          137 KG-QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF---QIEADFIGHNSNINTLTASPDGT-LI  211 (319)
T ss_dssp             TS-CEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTT---EEEEEECCCCSCEEEEEECTTSS-EE
T ss_pred             CC-CeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcc---hhheeecCCCCcEEEEEEcCCCC-EE
Confidence            74 4444443 3346778888664     3447899999999999999742   34567889999999999999986 69


Q ss_pred             EEEeCCCcEEEEEcCCCccceeecCCCCeEEEEeecC-CCEEEEccCCceEEEeec
Q 036314          289 ISASYDGKVMLWDLRTAWPLSVIDSHKDKVLCADWWR-GDSVISGGVDSKLCVSSG  343 (347)
Q Consensus       289 ~s~s~D~~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~l~s~s~D~~v~vw~~  343 (347)
                      ++|+.|++|+|||+++++.+..+..| +.|.+++|+| +..|++++ ++.+++|+.
T Consensus       212 ~s~~~dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~sp~~~~la~~~-~~~i~v~~~  265 (319)
T 3frx_A          212 ASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVFSLAFSPNRYWLAAAT-ATGIKVFSL  265 (319)
T ss_dssp             EEEETTCEEEEEETTTTEEEEEEECC-SCEEEEEECSSSSEEEEEE-TTEEEEEEE
T ss_pred             EEEeCCCeEEEEECCCCcEEEEecCC-CcEEEEEEcCCCCEEEEEc-CCCcEEEEe
Confidence            99999999999999999888888754 6899999987 44566655 556999974

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=8.7e-38  Score=281.20  Aligned_cols=286  Identities=14%  Similarity=0.122  Sum_probs=228.7

Q ss_pred             CCcCCceeeccCC-CCCEEEEEecCCeEEEEcCC-Ce--EEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEe
Q 036314           21 SLHDDWVSAVDGS-NPGFILTGCYDNLGRVWKAG-GV--CTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWK   96 (347)
Q Consensus        21 ~~h~~~v~~~~~~-~~~~l~sg~~d~~i~iw~~~-~~--~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd   96 (347)
                      ..|++.|++++++ ++.+|++|+.|++|++||.. +.  ....+.+|...|.+++|+|++    ..|++++.|++|++||
T Consensus         5 ~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~----~~l~~~~~dg~i~vwd   80 (372)
T 1k8k_C            5 SFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDS----NRIVTCGTDRNAYVWT   80 (372)
T ss_dssp             ESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTT----TEEEEEETTSCEEEEE
T ss_pred             cccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCC----CEEEEEcCCCeEEEEE
Confidence            3588999999998 56799999999999999975 44  778899999999999999854    3699999999999999


Q ss_pred             ccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccc
Q 036314           97 FDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEG  176 (347)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (347)
                      +..++.       .....+..|...|.+++|+|++++|++++.|+.|++||+......                     .
T Consensus        81 ~~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~---------------------~  132 (372)
T 1k8k_C           81 LKGRTW-------KPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDW---------------------W  132 (372)
T ss_dssp             EETTEE-------EEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTE---------------------E
T ss_pred             CCCCee-------eeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcc---------------------e
Confidence            976542       122345679999999999999999999999999999998753210                     0


Q ss_pred             cccccccCCccceEEEEe-CCCCeEEEEecCCcEEEEECC------------------CCceeeeee-eCeeeEEEEeeC
Q 036314          177 EAISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVE------------------MGKDLSDIF-CGKALNCIDIGG  236 (347)
Q Consensus       177 ~~~~~~~~h~~~v~~~~~-~~~~~l~s~s~dg~v~vwd~~------------------~~~~~~~~~-~~~~~~~~~~~~  236 (347)
                      .......+|...|.++.| ++++.|++++.|+.|++||++                  .+..+..+. +...+.++.+++
T Consensus       133 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  212 (372)
T 1k8k_C          133 VCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSA  212 (372)
T ss_dssp             EEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECS
T ss_pred             eeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECC
Confidence            011123567889999998 577889999999999999964                  455555553 234688999976


Q ss_pred             CCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCC--Cc--------
Q 036314          237 EGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRT--AW--------  306 (347)
Q Consensus       237 ~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~--~~--------  306 (347)
                      + +.++++++.|+.|++||++..   ..+..+..|...|.+++|+|++. +|+++ .|+.|++||++.  ++        
T Consensus       213 ~-~~~l~~~~~d~~i~i~d~~~~---~~~~~~~~~~~~v~~~~~~~~~~-~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~  286 (372)
T 1k8k_C          213 N-GSRVAWVSHDSTVCLADADKK---MAVATLASETLPLLAVTFITESS-LVAAG-HDCFPVLFTYDSAAGKLSFGGRLD  286 (372)
T ss_dssp             S-SSEEEEEETTTEEEEEEGGGT---TEEEEEECSSCCEEEEEEEETTE-EEEEE-TTSSCEEEEEETTTTEEEECCCCC
T ss_pred             C-CCEEEEEeCCCEEEEEECCCC---ceeEEEccCCCCeEEEEEecCCC-EEEEE-eCCeEEEEEccCcCceEEEeeccC
Confidence            5 468899999999999999753   35778889999999999999984 46666 999999999987  31        


Q ss_pred             ------------------------cc------eee-cCCCCeEEEEeec-C-C---CEEEEccCCceEEEeecc
Q 036314          307 ------------------------PL------SVI-DSHKDKVLCADWW-R-G---DSVISGGVDSKLCVSSGV  344 (347)
Q Consensus       307 ------------------------~~------~~~-~~h~~~v~~~~~~-~-~---~~l~s~s~D~~v~vw~~~  344 (347)
                                              ..      ..+ .+|.+.|.+++|. + |   .+|+||+.||+|+||+..
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~  360 (372)
T 1k8k_C          287 VPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVR  360 (372)
T ss_dssp             CC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHH
T ss_pred             ccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEec
Confidence                                    00      223 4899999999975 4 4   799999999999999864

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=1.7e-37  Score=285.02  Aligned_cols=275  Identities=22%  Similarity=0.328  Sum_probs=220.4

Q ss_pred             ceeeccCCCCCEEEEEecCCeEEEEcCC-CeEEEEe--eccCCceEEEEEeecCCCceEEEEEccCCCcEEEEecccccc
Q 036314           26 WVSAVDGSNPGFILTGCYDNLGRVWKAG-GVCTHIL--EGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEEL  102 (347)
Q Consensus        26 ~v~~~~~~~~~~l~sg~~d~~i~iw~~~-~~~~~~l--~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~  102 (347)
                      +++.++++.+++||+| .|++|+|||.. |.+.+.+  .+|...|++|+|+|++    .+|++|+.||+|++||+.+++ 
T Consensus       107 y~~~l~wS~~n~lAvg-ld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg----~~lasgs~Dg~v~iWd~~~~~-  180 (420)
T 4gga_A          107 YLNLVDWSSGNVLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEG----NYLAVGTSSAEVQLWDVQQQK-  180 (420)
T ss_dssp             TCBCEEECTTSEEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTS----SEEEEEETTSCEEEEETTTTE-
T ss_pred             cceeEEECCCCEEEEE-eCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCC----CEEEEEECCCeEEEEEcCCCc-
Confidence            3556677766777766 59999999974 6666654  4788899999999954    479999999999999998764 


Q ss_pred             ccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccc
Q 036314          103 VNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTL  182 (347)
Q Consensus       103 ~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (347)
                              .+..+.+|...+.+++++  +.++++|+.|+++++||.....                        ..+..+
T Consensus       181 --------~~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~------------------------~~~~~~  226 (420)
T 4gga_A          181 --------RLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAE------------------------HHVATL  226 (420)
T ss_dssp             --------EEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSS------------------------CEEEEE
T ss_pred             --------EEEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccc------------------------eeeEEe
Confidence                    456788999999888764  6899999999999999976431                        234567


Q ss_pred             cCCccceEEEEe-CCCCeEEEEecCCcEEEEECCCCcee----eee-eeCeeeEEEEeeCCCCcEEEE--ecCCCcEEEE
Q 036314          183 VGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDL----SDI-FCGKALNCIDIGGEGSALIAA--GGSDPILRIW  254 (347)
Q Consensus       183 ~~h~~~v~~~~~-~~~~~l~s~s~dg~v~vwd~~~~~~~----~~~-~~~~~~~~~~~~~~~~~~la~--~~~d~~i~iw  254 (347)
                      .+|...+..+.+ +++..+++++.|+.+++||...++..    ... .....+.++++++.+..++++  |+.|++|++|
T Consensus       227 ~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iw  306 (420)
T 4gga_A          227 SGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIW  306 (420)
T ss_dssp             ECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEE
T ss_pred             cccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEE
Confidence            789999999987 57889999999999999999876532    112 233468899999888888765  4579999999


Q ss_pred             eCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEE-eCCCcEEEEEcCCCccceeecCCCCeEEEEeecC-CCEEEEc
Q 036314          255 DPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISA-SYDGKVMLWDLRTAWPLSVIDSHKDKVLCADWWR-GDSVISG  332 (347)
Q Consensus       255 d~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~-s~D~~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~l~s~  332 (347)
                      |++..   .....+. +...+.++.|+|++..+++++ +.|++|+|||+++++++.++.+|.+.|++++|+| |++||||
T Consensus       307 d~~t~---~~~~~~~-~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~  382 (420)
T 4gga_A          307 NVCSG---ACLSAVD-AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASA  382 (420)
T ss_dssp             ETTTT---EEEEEEE-CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEE
T ss_pred             eCCcc---ccceeec-cccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEE
Confidence            99753   2344554 445688999999987644332 3799999999999999999999999999999985 7789999


Q ss_pred             cCCceEEEeecc
Q 036314          333 GVDSKLCVSSGV  344 (347)
Q Consensus       333 s~D~~v~vw~~~  344 (347)
                      |.|++|+||+.-
T Consensus       383 s~D~tvriWdv~  394 (420)
T 4gga_A          383 AADETLRLWRCF  394 (420)
T ss_dssp             ETTTEEEEECCS
T ss_pred             ecCCeEEEEECC
Confidence            999999999864

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=3.5e-37  Score=271.30  Aligned_cols=276  Identities=21%  Similarity=0.316  Sum_probs=219.7

Q ss_pred             ceeeccCCCCCEEEEEecCCeEEEEcCC-CeEEEEe--eccCCceEEEEEeecCCCceEEEEEccCCCcEEEEecccccc
Q 036314           26 WVSAVDGSNPGFILTGCYDNLGRVWKAG-GVCTHIL--EGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEEL  102 (347)
Q Consensus        26 ~v~~~~~~~~~~l~sg~~d~~i~iw~~~-~~~~~~l--~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~  102 (347)
                      +.+.+++|++++||+| .|++|+|||.. +++++.+  .+|...|.+++|+|++    ..|++|+.||+|++|++.+++ 
T Consensus        27 y~~~l~WS~~~~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~----~~l~sgs~Dg~v~iw~~~~~~-  100 (318)
T 4ggc_A           27 YLNLVDWSSGNVLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEG----NYLAVGTSSAEVQLWDVQQQK-  100 (318)
T ss_dssp             TCBCEEECTTSEEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTS----SEEEEEETTSEEEEEETTTTE-
T ss_pred             cceEEEECCCCEEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCC----CEEEEEECCCcEEEeecCCce-
Confidence            4678888877877765 69999999974 6776665  4788899999999954    379999999999999998764 


Q ss_pred             ccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccc
Q 036314          103 VNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTL  182 (347)
Q Consensus       103 ~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (347)
                              .+..+.+|...+.++.+  ++..+++++.++.+++|+.....                        ..+..+
T Consensus       101 --------~~~~~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~------------------------~~~~~~  146 (318)
T 4ggc_A          101 --------RLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAE------------------------HHVATL  146 (318)
T ss_dssp             --------EEEEEECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSS------------------------CEEEEE
T ss_pred             --------eEEEecCccceEEEeec--CCCEEEEEecCCceEeeecCCCc------------------------eeEEEE
Confidence                    45677899998877654  56899999999999999876431                        234566


Q ss_pred             cCCccceEEEEe-CCCCeEEEEecCCcEEEEECCCCceeeee-----eeCeeeEEEEeeCCCCcEE--EEecCCCcEEEE
Q 036314          183 VGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDI-----FCGKALNCIDIGGEGSALI--AAGGSDPILRIW  254 (347)
Q Consensus       183 ~~h~~~v~~~~~-~~~~~l~s~s~dg~v~vwd~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l--a~~~~d~~i~iw  254 (347)
                      .+|...+..+.+ +++..|++++.|++|++||+++++.....     .....+.++.+.+.+..++  ++++.++.|++|
T Consensus       147 ~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lw  226 (318)
T 4ggc_A          147 SGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIW  226 (318)
T ss_dssp             ECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEE
T ss_pred             cCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEE
Confidence            788889998887 57788999999999999999876543221     1234577888877766654  567789999999


Q ss_pred             eCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEE-EeCCCcEEEEEcCCCccceeecCCCCeEEEEeecC-CCEEEEc
Q 036314          255 DPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLIS-ASYDGKVMLWDLRTAWPLSVIDSHKDKVLCADWWR-GDSVISG  332 (347)
Q Consensus       255 d~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s-~s~D~~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~l~s~  332 (347)
                      |.+...    ......+...+..+.|+|++..++++ ++.|++|+|||+++++++.++.+|.+.|++++|+| |++||||
T Consensus       227 d~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~  302 (318)
T 4ggc_A          227 NVCSGA----CLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASA  302 (318)
T ss_dssp             ETTTCC----EEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEE
T ss_pred             eccccc----ccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEE
Confidence            987432    33444677789999999998764433 34799999999999999999999999999999985 7789999


Q ss_pred             cCCceEEEeeccc
Q 036314          333 GVDSKLCVSSGVS  345 (347)
Q Consensus       333 s~D~~v~vw~~~~  345 (347)
                      |.|++|+||+.-.
T Consensus       303 s~D~~v~iWd~~~  315 (318)
T 4ggc_A          303 AADETLRLWRCFE  315 (318)
T ss_dssp             ETTTEEEEECCSC
T ss_pred             ecCCeEEEEECCC
Confidence            9999999998643

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=1.3e-37  Score=277.93  Aligned_cols=251  Identities=20%  Similarity=0.294  Sum_probs=211.2

Q ss_pred             eEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEE
Q 036314           55 VCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMV  134 (347)
Q Consensus        55 ~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l  134 (347)
                      .....|.+|.+.|.+++|+|++    ..|++|+.||+|++||+.+++         ....+..|...|.+++|+|+++++
T Consensus        46 ~~~~~l~gH~~~v~~~~~s~d~----~~l~s~s~Dg~v~iWd~~~~~---------~~~~~~~~~~~v~~~~~s~~~~~l  112 (340)
T 1got_B           46 RTRRTLRGHLAKIYAMHWGTDS----RLLLSASQDGKLIIWDSYTTN---------KVHAIPLRSSWVMTCAYAPSGNYV  112 (340)
T ss_dssp             CEEEEECCCSSCEEEEEECTTS----SEEEEEETTTEEEEEETTTCC---------EEEEEECSSSCEEEEEECTTSSEE
T ss_pred             hhheeecCCCCceEEEEECCCC----CEEEEEeCCCcEEEEECCCCC---------cceEeecCCccEEEEEECCCCCEE
Confidence            4567899999999999999854    479999999999999987653         445678899999999999999999


Q ss_pred             EEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEeCCCCeEEEEecCCcEEEEEC
Q 036314          135 CSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWPQQETIYSASWDHSVRTWDV  214 (347)
Q Consensus       135 ~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~dg~v~vwd~  214 (347)
                      ++|+.|++|++|++......                     ......+.+|...|.++.|.++..+++++.|++|++||+
T Consensus       113 ~s~~~d~~v~iw~~~~~~~~---------------------~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~  171 (340)
T 1got_B          113 ACGGLDNICSIYNLKTREGN---------------------VRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDI  171 (340)
T ss_dssp             EEEETTCEEEEEETTTCSBS---------------------CEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred             EEEeCCCeEEEEECccCCCc---------------------ceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEEC
Confidence            99999999999998753210                     112345678999999999976678999999999999999


Q ss_pred             CCCceeeeeee-CeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeC
Q 036314          215 EMGKDLSDIFC-GKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASY  293 (347)
Q Consensus       215 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~  293 (347)
                      ++++.+..+.. ...+.+++++|+ +.++++|+.|+.|++||++..   .....+.+|...|.+++|+|++. +|++|+.
T Consensus       172 ~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~sg~~d~~v~~wd~~~~---~~~~~~~~h~~~v~~v~~~p~~~-~l~s~s~  246 (340)
T 1got_B          172 ETGQQTTTFTGHTGDVMSLSLAPD-TRLFVSGACDASAKLWDVREG---MCRQTFTGHESDINAICFFPNGN-AFATGSD  246 (340)
T ss_dssp             TTTEEEEEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTC---SEEEEECCCSSCEEEEEECTTSS-EEEEEET
T ss_pred             CCCcEEEEEcCCCCceEEEEECCC-CCEEEEEeCCCcEEEEECCCC---eeEEEEcCCcCCEEEEEEcCCCC-EEEEEcC
Confidence            99988777653 347899999765 568899999999999999753   34678899999999999999986 5999999


Q ss_pred             CCcEEEEEcCCCccceeec--CCCCeEEEEeecC-CCEEEEccCCceEEEeecc
Q 036314          294 DGKVMLWDLRTAWPLSVID--SHKDKVLCADWWR-GDSVISGGVDSKLCVSSGV  344 (347)
Q Consensus       294 D~~i~lwd~~~~~~~~~~~--~h~~~v~~~~~~~-~~~l~s~s~D~~v~vw~~~  344 (347)
                      |++|++||+++++.+..+.  .+...|.+++|+| |++|++|+.|++|+||+..
T Consensus       247 d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~  300 (340)
T 1got_B          247 DATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL  300 (340)
T ss_dssp             TSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             CCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcc
Confidence            9999999999887766654  3345799999985 7789999999999999864

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=3.3e-38  Score=282.42  Aligned_cols=257  Identities=25%  Similarity=0.396  Sum_probs=201.7

Q ss_pred             CCCcCCceeeccCC-CCCEEEEEecCCeEEEEcCC-C--eEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEE
Q 036314           20 PSLHDDWVSAVDGS-NPGFILTGCYDNLGRVWKAG-G--VCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLW   95 (347)
Q Consensus        20 ~~~h~~~v~~~~~~-~~~~l~sg~~d~~i~iw~~~-~--~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~w   95 (347)
                      ..+|...|++++|+ ++.+||+|+.|+++++|+.. +  .++..+.+|.+.|.+++|+|++    ..|++++.|++|++|
T Consensus        57 ~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~----~~l~s~s~D~~v~iw  132 (345)
T 3fm0_A           57 SEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSG----NLLATCSRDKSVWVW  132 (345)
T ss_dssp             CSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTS----SEEEEEETTSCEEEE
T ss_pred             ccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCC----CEEEEEECCCeEEEE
Confidence            45899999999998 46799999999999999864 2  4677899999999999999954    379999999999999


Q ss_pred             eccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCcccccccc
Q 036314           96 KFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLE  175 (347)
Q Consensus        96 d~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (347)
                      |+..++      ...+...+.+|...|.+++|+|++++|++|+.|++|++|+.....                       
T Consensus       133 d~~~~~------~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~-----------------------  183 (345)
T 3fm0_A          133 EVDEED------EYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDD-----------------------  183 (345)
T ss_dssp             EECTTS------CEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTE-----------------------
T ss_pred             ECCCCC------CeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCC-----------------------
Confidence            987542      223456788999999999999999999999999999999976431                       


Q ss_pred             ccccccccCCccceEEEEe-CCCCeEEEEecCCcEEEEECCCCce---------------eeeee--eCeeeEEEEeeCC
Q 036314          176 GEAISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKD---------------LSDIF--CGKALNCIDIGGE  237 (347)
Q Consensus       176 ~~~~~~~~~h~~~v~~~~~-~~~~~l~s~s~dg~v~vwd~~~~~~---------------~~~~~--~~~~~~~~~~~~~  237 (347)
                      ..+...+.+|...|.+++| |++++|++++.|++|++||...+..               +..+.  +...+.++++++.
T Consensus       184 ~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~  263 (345)
T 3fm0_A          184 WVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQL  263 (345)
T ss_dssp             EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTT
T ss_pred             EEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecC
Confidence            1234567889999999999 5788999999999999999743211               11111  2346788999776


Q ss_pred             CCcEEEEecCCCcEEEEeCCCCCCC-CCe-----EEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCcccee
Q 036314          238 GSALIAAGGSDPILRIWDPRKPGTS-APV-----FQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSV  310 (347)
Q Consensus       238 ~~~~la~~~~d~~i~iwd~~~~~~~-~~~-----~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~  310 (347)
                      + ..+++++.|+.|++|+....... .+.     ..+.+|.+.|.+++|+|++..+||||+.||+|++|++++++.+..
T Consensus       264 ~-~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~~  341 (345)
T 3fm0_A          264 T-GALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGLHH  341 (345)
T ss_dssp             T-CCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC------
T ss_pred             C-CEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCccc
Confidence            5 46788999999999997643211 111     223589999999999999866799999999999999998765544

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.5e-38  Score=279.24  Aligned_cols=256  Identities=22%  Similarity=0.348  Sum_probs=198.2

Q ss_pred             eEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeee-ec-cccceEEEEEeCCCC
Q 036314           55 VCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKIL-RG-HKASVHSIAAETSGN  132 (347)
Q Consensus        55 ~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~-~~-h~~~V~~v~~s~~~~  132 (347)
                      .+++.|.+|.+.|.+++|+++      .|++|+.|++|++||+..++.       .....+ .+ |..+|.+++|+|+++
T Consensus         5 ~~~~~~~~h~~~v~~~~~s~~------~las~~~D~~i~lw~~~~~~~-------~~~~~~~~~~h~~~v~~v~~sp~~~   71 (330)
T 2hes_X            5 NLIKSLKLYKEKIWSFDFSQG------ILATGSTDRKIKLVSVKYDDF-------TLIDVLDETAHKKAIRSVAWRPHTS   71 (330)
T ss_dssp             EEEEEEECCSSCEEEEEEETT------EEEEEESSSCEEEEECSSSCC-------EEEEEECTTCCCSCEEEEEECTTSS
T ss_pred             ccceeeccCCCceeeeccCCC------EEEEEcCCCEEEEEEecCCCe-------EEEEEEecCCccCCEEEEEECCCCC
Confidence            467789999999999999873      699999999999999875421       223344 34 999999999999999


Q ss_pred             EEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEe-CCCCeEEEEecCCcEEE
Q 036314          133 MVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRT  211 (347)
Q Consensus       133 ~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~l~s~s~dg~v~v  211 (347)
                      +|++|+.|++|+||++......                  ......+..+.+|...|.+++| |++++|++++.|++|++
T Consensus        72 ~las~s~D~~v~iw~~~~~~~~------------------~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~i  133 (330)
T 2hes_X           72 LLAAGSFDSTVSIWAKEESADR------------------TFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWI  133 (330)
T ss_dssp             EEEEEETTSCEEEEEC-------------------------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEE
T ss_pred             EEEEEeCCCcEEEEEcccCcCc------------------cccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEE
Confidence            9999999999999998532100                  0012335567899999999999 57889999999999999


Q ss_pred             EECCCC----ceeeeee-eCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCC-C
Q 036314          212 WDVEMG----KDLSDIF-CGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKS-W  285 (347)
Q Consensus       212 wd~~~~----~~~~~~~-~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~  285 (347)
                      ||++..    +.+..+. +...+.+++|+|+ +.+|++++.|++|++||.+.. ....+..+.+|...|.+++|+|++ .
T Consensus       134 wd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~-~~~l~s~s~D~~i~iW~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~  211 (330)
T 2hes_X          134 WETDESGEEYECISVLQEHSQDVKHVIWHPS-EALLASSSYDDTVRIWKDYDD-DWECVAVLNGHEGTVWSSDFDKTEGV  211 (330)
T ss_dssp             EECCTTCCCCEEEEEECCCSSCEEEEEECSS-SSEEEEEETTSCEEEEEEETT-EEEEEEEECCCSSCEEEEEECCSSSS
T ss_pred             EeccCCCCCeEEEEEeccCCCceEEEEECCC-CCEEEEEcCCCeEEEEECCCC-CeeEEEEccCCCCcEEEEEecCCCCe
Confidence            999532    2333333 3356899999765 568899999999999997642 123467889999999999999983 2


Q ss_pred             eEEEEEeCCCcEEEEEcCCC--------ccceeecC-CCCeEEEEeecCCCEEEEccCCceEEEeec
Q 036314          286 FHLISASYDGKVMLWDLRTA--------WPLSVIDS-HKDKVLCADWWRGDSVISGGVDSKLCVSSG  343 (347)
Q Consensus       286 ~~l~s~s~D~~i~lwd~~~~--------~~~~~~~~-h~~~v~~~~~~~~~~l~s~s~D~~v~vw~~  343 (347)
                      .+|++|+.|++|++||++.+        .....+.+ |...|++++|+++.+|++++.|++|+||+.
T Consensus       212 ~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~l~s~~~dg~v~iw~~  278 (330)
T 2hes_X          212 FRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEE  278 (330)
T ss_dssp             CEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTSCEEEEETTSCEEEEEE
T ss_pred             eEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCCEEEEEeCCCEEEEEEc
Confidence            46999999999999999764        23344544 999999999998889999999999999984

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=1.2e-38  Score=287.41  Aligned_cols=291  Identities=12%  Similarity=0.057  Sum_probs=209.5

Q ss_pred             CceeeccCC-CCCEEEEEecC-------CeEEEEcCCC-----------eEEEEeeccCCceEEEEEeecC-----CCce
Q 036314           25 DWVSAVDGS-NPGFILTGCYD-------NLGRVWKAGG-----------VCTHILEGHCGAVSSVNIIKSD-----GLKY   80 (347)
Q Consensus        25 ~~v~~~~~~-~~~~l~sg~~d-------~~i~iw~~~~-----------~~~~~l~~h~~~V~~v~~~~~~-----~~~~   80 (347)
                      -+|.+++|+ ++.+||+||.|       ++|++|+...           .....|.+|+..|.++++.+..     +...
T Consensus        15 ~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~~~~~~g~~~~~   94 (365)
T 4h5i_A           15 YPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASKGIILVGCNENS   94 (365)
T ss_dssp             SCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEETTEEEEECCCCH
T ss_pred             CCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCCCEEEEEECCCc
Confidence            479999998 45689998764       3699998531           0123577899999999875420     0011


Q ss_pred             EEEEEccCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEEE--EeeCCCcEEEEecCCCCCCCccc
Q 036314           81 VTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVC--SGSWDCTISLWRTNDSDAAGNQV  158 (347)
Q Consensus        81 ~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~--sgs~Dg~I~iwd~~~~~~~~~~~  158 (347)
                      ..|++++.|+++|+|++...+................+...+.+++|+|||++++  +++.|++|+|||+++..      
T Consensus        95 ~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~------  168 (365)
T 4h5i_A           95 TKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLT------  168 (365)
T ss_dssp             HHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTE------
T ss_pred             cEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCc------
Confidence            1234566789999999875431110000001112234566789999999999875  56689999999987642      


Q ss_pred             eeeeccCCCccccccccccccccccCCccceEEEEe-CCCCeEEEEecCCcEEEEECCCCceeeeee---eCeeeEEEEe
Q 036314          159 SIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIF---CGKALNCIDI  234 (347)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~---~~~~~~~~~~  234 (347)
                                         .+..+ .|...|.+++| |+++++++++ ++.+++|+..++..+....   ....+.+++|
T Consensus       169 -------------------~~~~~-~~~~~V~~v~fspdg~~l~s~s-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~f  227 (365)
T 4h5i_A          169 -------------------EKFEI-ETRGEVKDLHFSTDGKVVAYIT-GSSLEVISTVTGSCIARKTDFDKNWSLSKINF  227 (365)
T ss_dssp             -------------------EEEEE-ECSSCCCEEEECTTSSEEEEEC-SSCEEEEETTTCCEEEEECCCCTTEEEEEEEE
T ss_pred             -------------------EEEEe-CCCCceEEEEEccCCceEEecc-ceeEEEEEeccCcceeeeecCCCCCCEEEEEE
Confidence                               23333 36678999999 5778888877 5567777777776554322   2346889999


Q ss_pred             eCCCCcEEEEecCCC----cEEEEeCCCCCC-CCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccce
Q 036314          235 GGEGSALIAAGGSDP----ILRIWDPRKPGT-SAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLS  309 (347)
Q Consensus       235 ~~~~~~~la~~~~d~----~i~iwd~~~~~~-~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~  309 (347)
                      +|++ ..+++++.|+    .+++||+..... ......+.+|...|.+++|+|++. +||+|+.|++|+|||+++++++.
T Consensus       228 spdg-~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~-~lasgs~D~~V~iwd~~~~~~~~  305 (365)
T 4h5i_A          228 IADD-TVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGE-LAVLASNDNSIALVKLKDLSMSK  305 (365)
T ss_dssp             EETT-EEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSC-EEEEEETTSCEEEEETTTTEEEE
T ss_pred             cCCC-CEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCC-ceEEEcCCCEEEEEECCCCcEEE
Confidence            8765 5667777666    688898764221 112356789999999999999986 69999999999999999999888


Q ss_pred             ee-cCCCCeEEEEeecC-CCEEEEccCCceEEEeecc
Q 036314          310 VI-DSHKDKVLCADWWR-GDSVISGGVDSKLCVSSGV  344 (347)
Q Consensus       310 ~~-~~h~~~v~~~~~~~-~~~l~s~s~D~~v~vw~~~  344 (347)
                      ++ .+|.+.|++++|+| |++|||||.|++|+||+.+
T Consensus       306 ~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip  342 (365)
T 4h5i_A          306 IFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLP  342 (365)
T ss_dssp             EETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECC
T ss_pred             EecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcC
Confidence            75 79999999999986 7789999999999999976

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=1.4e-38  Score=293.74  Aligned_cols=282  Identities=15%  Similarity=0.181  Sum_probs=213.2

Q ss_pred             CCcCCceeeccCCC--CCEEEEEecCCeEEEEcCC-C--eEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEE
Q 036314           21 SLHDDWVSAVDGSN--PGFILTGCYDNLGRVWKAG-G--VCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLW   95 (347)
Q Consensus        21 ~~h~~~v~~~~~~~--~~~l~sg~~d~~i~iw~~~-~--~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~w   95 (347)
                      .+|...|++++|++  +.+||+|+.||+|+|||.. +  .....+.+|.+.|.+|+|+|.++   ..|+|+|.||+|++|
T Consensus       116 ~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~---~~l~s~s~D~~v~iw  192 (435)
T 4e54_B          116 APFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNT---NQFYASSMEGTTRLQ  192 (435)
T ss_dssp             EECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCT---TEEEEECSSSCEEEE
T ss_pred             CCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCC---CEEEEEeCCCEEEEe
Confidence            46889999999873  5699999999999999974 2  34556789999999999998543   379999999999999


Q ss_pred             eccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCcccccccc
Q 036314           96 KFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLE  175 (347)
Q Consensus        96 d~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (347)
                      |+..+.+       +.+.....+...+.+++|++++++|++|+.||+|++||++.                         
T Consensus       193 d~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-------------------------  240 (435)
T 4e54_B          193 DFKGNIL-------RVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-------------------------  240 (435)
T ss_dssp             ETTSCEE-------EEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-------------------------
T ss_pred             eccCCce-------eEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-------------------------
Confidence            9875431       12222223455678899999999999999999999999753                         


Q ss_pred             ccccccccCCccceEEEEeC-CCC-eEEEEecCCcEEEEECCCCceeeee----eeCeeeEEEEeeCCCCcEEEEecCCC
Q 036314          176 GEAISTLVGHTQCVSSVVWP-QQE-TIYSASWDHSVRTWDVEMGKDLSDI----FCGKALNCIDIGGEGSALIAAGGSDP  249 (347)
Q Consensus       176 ~~~~~~~~~h~~~v~~~~~~-~~~-~l~s~s~dg~v~vwd~~~~~~~~~~----~~~~~~~~~~~~~~~~~~la~~~~d~  249 (347)
                       ..+..+.+|...|.+++|. +++ .+++++.|++|++||++..+....+    .+...+.+++|+++ +.+|++++.|+
T Consensus       241 -~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spd-g~~l~s~~~D~  318 (435)
T 4e54_B          241 -KELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPD-GARLLTTDQKS  318 (435)
T ss_dssp             -CBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTT-SSEEEEEESSS
T ss_pred             -ceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCC-CCeeEEEcCCC
Confidence             2345677899999999984 544 6889999999999999887654333    23457889999765 56889999999


Q ss_pred             cEEEEeCCCCCCCCCeEEecCCCC------CeeEEEeCCCCCeEEEEE------------eCCCcEEEEEcCCCccceee
Q 036314          250 ILRIWDPRKPGTSAPVFQFSSHNS------WISACKWHNKSWFHLISA------------SYDGKVMLWDLRTAWPLSVI  311 (347)
Q Consensus       250 ~i~iwd~~~~~~~~~~~~~~~h~~------~v~~v~~s~~~~~~l~s~------------s~D~~i~lwd~~~~~~~~~~  311 (347)
                      .|++||++...   ....+..|..      .+..+.|+|++.. ++++            ..++.|++||..+++.+..+
T Consensus       319 ~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l  394 (435)
T 4e54_B          319 EIRVYSASQWD---CPLGLIPHPHRHFQHLTPIKAAWHPRYNL-IVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQL  394 (435)
T ss_dssp             CEEEEESSSSS---SEEEECCCCCCCCSSSCCCBCEECSSSSC-EEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEE
T ss_pred             EEEEEECCCCc---cceEEecccccccccceeEEEEEcCCCCE-EEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEE
Confidence            99999987532   2334444432      1234556666543 3333            24468999999999888776


Q ss_pred             -cCCCCeEEEE-eecC-CCEEEEccCCceEEEeecc
Q 036314          312 -DSHKDKVLCA-DWWR-GDSVISGGVDSKLCVSSGV  344 (347)
Q Consensus       312 -~~h~~~v~~~-~~~~-~~~l~s~s~D~~v~vw~~~  344 (347)
                       .+|...|.++ +|+| |.+||+|+ |++|+||+.-
T Consensus       395 ~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~  429 (435)
T 4e54_B          395 YDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQ  429 (435)
T ss_dssp             CCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC
T ss_pred             eCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECC
Confidence             4788888887 5885 66788876 8899999854

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=3.5e-39  Score=291.48  Aligned_cols=286  Identities=12%  Similarity=0.112  Sum_probs=214.5

Q ss_pred             CcCCceeeccCC-CCCEEEEEecCCeEEEEcCC-C--eEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEec
Q 036314           22 LHDDWVSAVDGS-NPGFILTGCYDNLGRVWKAG-G--VCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKF   97 (347)
Q Consensus        22 ~h~~~v~~~~~~-~~~~l~sg~~d~~i~iw~~~-~--~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~   97 (347)
                      .|.+.|++++++ ++.+||+|+.|++|++|+.. +  .+...+.+|.+.|.+++|+|++.    .|++++.|++|++||+
T Consensus         9 ~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~----~l~s~s~d~~v~vwd~   84 (377)
T 3dwl_C            9 ILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSN----RIVTCSQDRNAYVYEK   84 (377)
T ss_dssp             ECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTC----CEEEEETTSSEEEC--
T ss_pred             cCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCC----EEEEEeCCCeEEEEEc
Confidence            456789999998 56799999999999999975 4  56778999999999999998543    6999999999999999


Q ss_pred             cccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCcccccccccc
Q 036314           98 DAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGE  177 (347)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (347)
                      ..++      ...+...+.+|...|.+++|+|++++|++++.|++|++||++....                      ..
T Consensus        85 ~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~----------------------~~  136 (377)
T 3dwl_C           85 RPDG------TWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQEND----------------------WW  136 (377)
T ss_dssp             ----------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC---------------------------CC
T ss_pred             CCCC------ceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCccc----------------------ce
Confidence            8654      1223456778999999999999999999999999999999875421                      01


Q ss_pred             ccccccC-CccceEEEEe-CCCCeEEEEecCCcEEEEECCC------------------CceeeeeeeCeeeEEEEeeCC
Q 036314          178 AISTLVG-HTQCVSSVVW-PQQETIYSASWDHSVRTWDVEM------------------GKDLSDIFCGKALNCIDIGGE  237 (347)
Q Consensus       178 ~~~~~~~-h~~~v~~~~~-~~~~~l~s~s~dg~v~vwd~~~------------------~~~~~~~~~~~~~~~~~~~~~  237 (347)
                      ....+.+ |...|.+++| |++++|++++.|++|++||++.                  ++.+..+.+...+.+++++|+
T Consensus       137 ~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~  216 (377)
T 3dwl_C          137 VSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPS  216 (377)
T ss_dssp             CCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTT
T ss_pred             eeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCC
Confidence            2344555 8999999998 5778999999999999999853                  223333333446889999765


Q ss_pred             CCcEEEEecCCCcEEEEeCCCCCCC-CCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCc-c-c------
Q 036314          238 GSALIAAGGSDPILRIWDPRKPGTS-APVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAW-P-L------  308 (347)
Q Consensus       238 ~~~~la~~~~d~~i~iwd~~~~~~~-~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~-~-~------  308 (347)
                       +.+|++++.|+.|++||++....+ ..+..+.+|...|.+++|+|++. +|++++.|+.+ +|+..... . .      
T Consensus       217 -~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~  293 (377)
T 3dwl_C          217 -GNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESA-IVAAGYNYSPI-LLQGNESGWAHTRDLDAG  293 (377)
T ss_dssp             -SSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTE-EEEEESSSSEE-EECCCC---CCSBCCCSC
T ss_pred             -CCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCC-EEEEEcCCcEE-EEEeCCCceEEEeeeccc
Confidence             457889999999999999764321 01567789999999999999984 68888766665 67664211 0 0      


Q ss_pred             ----------------------------e----------------eecCCCCeEEEEeecC--CC---EEEEccCCceEE
Q 036314          309 ----------------------------S----------------VIDSHKDKVLCADWWR--GD---SVISGGVDSKLC  339 (347)
Q Consensus       309 ----------------------------~----------------~~~~h~~~v~~~~~~~--~~---~l~s~s~D~~v~  339 (347)
                                                  .                ....|.+.|.++.+.+  +.   +|+|||.||+|+
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~  373 (377)
T 3dwl_C          294 TSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVV  373 (377)
T ss_dssp             CCCCCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEE
T ss_pred             ccccccccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEE
Confidence                                        0                0123999999999753  33   699999999999


Q ss_pred             Eee
Q 036314          340 VSS  342 (347)
Q Consensus       340 vw~  342 (347)
                      ||+
T Consensus       374 iWd  376 (377)
T 3dwl_C          374 LWT  376 (377)
T ss_dssp             EEC
T ss_pred             Eec
Confidence            997

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=1.4e-38  Score=281.36  Aligned_cols=253  Identities=19%  Similarity=0.223  Sum_probs=193.4

Q ss_pred             CCCCcCCceeeccCC-CCCEEEEEecCCeEEEEcCC-Ce--EEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEE
Q 036314           19 EPSLHDDWVSAVDGS-NPGFILTGCYDNLGRVWKAG-GV--CTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRL   94 (347)
Q Consensus        19 ~~~~h~~~v~~~~~~-~~~~l~sg~~d~~i~iw~~~-~~--~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~   94 (347)
                      ...+|++.|++++|+ ++++|||||.|++|++||+. +.  ++..|.+|.+.|.+++|+++.  ++..|+||+.|++|++
T Consensus         8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~--~~~~l~s~s~D~~v~i   85 (316)
T 3bg1_A            8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPM--YGNILASCSYDRKVII   85 (316)
T ss_dssp             ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGG--GSSCEEEEETTSCEEE
T ss_pred             ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCC--CCCEEEEEECCCEEEE
Confidence            356899999999998 56799999999999999974 32  467899999999999997631  1236999999999999


Q ss_pred             EeccccccccCccccceeeeeeccccceEEEEEeCC--CCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccc
Q 036314           95 WKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETS--GNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEP  172 (347)
Q Consensus        95 wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~--~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  172 (347)
                      ||+.+++       .+....+.+|..+|.+++|+|+  +.+|++|+.|++|++|++.....                   
T Consensus        86 Wd~~~~~-------~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~-------------------  139 (316)
T 3bg1_A           86 WREENGT-------WEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQ-------------------  139 (316)
T ss_dssp             ECCSSSC-------CCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSC-------------------
T ss_pred             EECCCCc-------ceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCC-------------------
Confidence            9987643       1244567899999999999998  78999999999999999865310                   


Q ss_pred             cccccccccccCCccceEEEEeCC------------------CCeEEEEecCCcEEEEECCCCc---eeeeeee-CeeeE
Q 036314          173 QLEGEAISTLVGHTQCVSSVVWPQ------------------QETIYSASWDHSVRTWDVEMGK---DLSDIFC-GKALN  230 (347)
Q Consensus       173 ~~~~~~~~~~~~h~~~v~~~~~~~------------------~~~l~s~s~dg~v~vwd~~~~~---~~~~~~~-~~~~~  230 (347)
                         ......+.+|...+.++.|.+                  +++|++++.|++|++||++...   .+..+.. ...+.
T Consensus       140 ---~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~  216 (316)
T 3bg1_A          140 ---WEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVR  216 (316)
T ss_dssp             ---EEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEE
T ss_pred             ---cceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceE
Confidence               001234456777777777732                  3689999999999999997542   3334432 34689


Q ss_pred             EEEeeCCC---CcEEEEecCCCcEEEEeCCCCCCC-CCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcC
Q 036314          231 CIDIGGEG---SALIAAGGSDPILRIWDPRKPGTS-APVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLR  303 (347)
Q Consensus       231 ~~~~~~~~---~~~la~~~~d~~i~iwd~~~~~~~-~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~  303 (347)
                      +++|+|++   ..+|++++.|++|++||++..... .....+..|.+.|.+++|+|++. +||+++.|++|+||+..
T Consensus       217 ~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~-~las~~~D~~v~lw~~~  292 (316)
T 3bg1_A          217 DVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITAN-ILAVSGGDNKVTLWKES  292 (316)
T ss_dssp             EEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTC-CEEEEESSSCEEEEEEC
T ss_pred             EEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCC-EEEEEcCCCeEEEEEEC
Confidence            99998764   368999999999999998752111 11234567899999999999986 59999999999999986

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.8e-37  Score=283.54  Aligned_cols=277  Identities=16%  Similarity=0.209  Sum_probs=232.9

Q ss_pred             CcCCceeeccCC-CCCEEEEEecCCeEEEEcCCCeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEecccc
Q 036314           22 LHDDWVSAVDGS-NPGFILTGCYDNLGRVWKAGGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAE  100 (347)
Q Consensus        22 ~h~~~v~~~~~~-~~~~l~sg~~d~~i~iw~~~~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~  100 (347)
                      +|.+.|++++++ ++.+|++|+.|++|++|+..+.....+.+|...|.+++|+|++    ..|++++.|+.|++||+.++
T Consensus       106 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~l~~~~~d~~i~iwd~~~~  181 (425)
T 1r5m_A          106 KTTNQVTCLAWSHDGNSIVTGVENGELRLWNKTGALLNVLNFHRAPIVSVKWNKDG----THIISMDVENVTILWNVISG  181 (425)
T ss_dssp             --CBCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCCSCEEEEEECTTS----SEEEEEETTCCEEEEETTTT
T ss_pred             CCCCceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeeccCCCccEEEEEECCCC----CEEEEEecCCeEEEEECCCC
Confidence            478899999998 5679999999999999998888889999999999999999854    36899999999999999766


Q ss_pred             ccccCccccceeeeeeccccc---------------eEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccC
Q 036314          101 ELVNHPKKIRSFKILRGHKAS---------------VHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKG  165 (347)
Q Consensus       101 ~~~~~~~~~~~~~~~~~h~~~---------------V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~  165 (347)
                      +.         ...+..|...               +.+++|++++ .+++++.|+.|++||+...              
T Consensus       182 ~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~--------------  237 (425)
T 1r5m_A          182 TV---------MQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEK--------------  237 (425)
T ss_dssp             EE---------EEEECCC---------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCS--------------
T ss_pred             cE---------EEEeeccccCccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCC--------------
Confidence            42         3344555555               8899999875 5888999999999998753              


Q ss_pred             CCccccccccccccccccCCccceEEEEe-CCCCeEEEEecCCcEEEEECCCCceeeeee-eCeeeEEEEeeCCCCcEEE
Q 036314          166 NNQVEEPQLEGEAISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIF-CGKALNCIDIGGEGSALIA  243 (347)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~la  243 (347)
                                 ..+..+.+|...|.++.| ++++.|++++.|+.|++||+++++.+..+. +...+.++.+.+++  .++
T Consensus       238 -----------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~  304 (425)
T 1r5m_A          238 -----------TPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD--KVI  304 (425)
T ss_dssp             -----------SCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT--EEE
T ss_pred             -----------ceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC--EEE
Confidence                       224456678899999998 677899999999999999999887776665 34578899998765  888


Q ss_pred             EecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCc-----------------
Q 036314          244 AGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAW-----------------  306 (347)
Q Consensus       244 ~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~-----------------  306 (347)
                      +++.|+.|++||++..   ..+..+..|...|.+++|+|++. +|++++.|+.|++||+++++                 
T Consensus       305 ~~~~d~~i~i~d~~~~---~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~  380 (425)
T 1r5m_A          305 SCSMDGSVRLWSLKQN---TLLALSIVDGVPIFAGRISQDGQ-KYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPL  380 (425)
T ss_dssp             EEETTSEEEEEETTTT---EEEEEEECTTCCEEEEEECTTSS-EEEEEETTSCEEEEECHHHHC--------------CE
T ss_pred             EEeCCCcEEEEECCCC---cEeEecccCCccEEEEEEcCCCC-EEEEEECCCeEEEEECCCCccceeeeecccccccCcc
Confidence            9999999999999753   34677888999999999999986 69999999999999999877                 


Q ss_pred             ---cceeecCCCC--eEEEEeecC-CCEEEEccCCceEEEeec
Q 036314          307 ---PLSVIDSHKD--KVLCADWWR-GDSVISGGVDSKLCVSSG  343 (347)
Q Consensus       307 ---~~~~~~~h~~--~v~~~~~~~-~~~l~s~s~D~~v~vw~~  343 (347)
                         .+..+.+|..  .|.++.|++ +++|++++.|++|+||+.
T Consensus       381 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~  423 (425)
T 1r5m_A          381 PIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAI  423 (425)
T ss_dssp             ECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEEC
T ss_pred             cchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEee
Confidence               7788899976  999999985 678999999999999985

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.1e-38  Score=291.08  Aligned_cols=286  Identities=12%  Similarity=0.187  Sum_probs=219.9

Q ss_pred             CCcCCceeeccCCC--CCEEEEEecCCeEEEEcCC----Ce---EEEEeeccCCceEEEEEeecCCCceEEEEEccCCCc
Q 036314           21 SLHDDWVSAVDGSN--PGFILTGCYDNLGRVWKAG----GV---CTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQT   91 (347)
Q Consensus        21 ~~h~~~v~~~~~~~--~~~l~sg~~d~~i~iw~~~----~~---~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~   91 (347)
                      .+|.+.|+++++++  +.+|||||.|++|++||..    +.   +...+ +|.+.|.+++|++++    ..|++++.||+
T Consensus        60 ~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~----~~l~s~s~dg~  134 (437)
T 3gre_A           60 ENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNF----DAFAVSSKDGQ  134 (437)
T ss_dssp             TTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTS----SEEEEEETTSE
T ss_pred             cCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCC----CEEEEEeCCCE
Confidence            67999999999876  4699999999999999863    22   12222 699999999999844    37999999999


Q ss_pred             EEEEecc---ccccccCccccceeeeee--c--cccceEEEE--EeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeee
Q 036314           92 LRLWKFD---AEELVNHPKKIRSFKILR--G--HKASVHSIA--AETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKK  162 (347)
Q Consensus        92 v~~wd~~---~~~~~~~~~~~~~~~~~~--~--h~~~V~~v~--~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~  162 (347)
                      |++||+.   .++...... ...+..+.  .  +...+.++.  +++++.++++|+.|++|++||+.+.           
T Consensus       135 i~vwd~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-----------  202 (437)
T 3gre_A          135 IIVLKVNHYQQESEVKFLN-CECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTL-----------  202 (437)
T ss_dssp             EEEEEEEEEEETTEEEEEE-EEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTC-----------
T ss_pred             EEEEEeccccCCceeeccc-cceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC-----------
Confidence            9999995   332211100 01111121  2  556677777  5688999999999999999998763           


Q ss_pred             ccCCCccccccccccccccccC--CccceEEEEe-CCCCeEEEEecCCcEEEEECCCCceeeeee--eCeeeEEEEeeC-
Q 036314          163 RKGNNQVEEPQLEGEAISTLVG--HTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIF--CGKALNCIDIGG-  236 (347)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~-~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~--~~~~~~~~~~~~-  236 (347)
                                    +.+..+.+  |...|.+++| |++..|++++.||+|++||+++++.+..+.  ....+.++.+.+ 
T Consensus       203 --------------~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~  268 (437)
T 3gre_A          203 --------------ERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQF  268 (437)
T ss_dssp             --------------CEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTT
T ss_pred             --------------eeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccc
Confidence                          23445555  7889999998 577889999999999999999988877664  345788886654 


Q ss_pred             --CCCcEEEEecCCCcEEEEeCCCCCCCCCeEEec------------------------C--CCCCeeEEEeCCCCCeEE
Q 036314          237 --EGSALIAAGGSDPILRIWDPRKPGTSAPVFQFS------------------------S--HNSWISACKWHNKSWFHL  288 (347)
Q Consensus       237 --~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~------------------------~--h~~~v~~v~~s~~~~~~l  288 (347)
                        +++.++++++.|+.|++||++...   ....+.                        +  |...|.+++|+ ++ .+|
T Consensus       269 ~s~~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~-~~l  343 (437)
T 3gre_A          269 YGKNSVIVVGGSSKTFLTIWNFVKGH---CQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-ND-KIL  343 (437)
T ss_dssp             TCTTEEEEEEESTTEEEEEEETTTTE---EEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TT-EEE
T ss_pred             cCCCccEEEEEcCCCcEEEEEcCCCc---EEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-Cc-eEE
Confidence              356689999999999999997432   122222                        2  66678888998 44 579


Q ss_pred             EEEeCCCcEEEEEcCCCccceeecC-------------------------------------CCCeEEEEeecC---CCE
Q 036314          289 ISASYDGKVMLWDLRTAWPLSVIDS-------------------------------------HKDKVLCADWWR---GDS  328 (347)
Q Consensus       289 ~s~s~D~~i~lwd~~~~~~~~~~~~-------------------------------------h~~~v~~~~~~~---~~~  328 (347)
                      ++|+.|+.|++||+++++....+.+                                     |.+.|.+++|.+   +.+
T Consensus       344 ~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~  423 (437)
T 3gre_A          344 LTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPL  423 (437)
T ss_dssp             EEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEE
T ss_pred             EecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceE
Confidence            9999999999999999887777665                                     899999999963   447


Q ss_pred             EEEccCCceEEEee
Q 036314          329 VISGGVDSKLCVSS  342 (347)
Q Consensus       329 l~s~s~D~~v~vw~  342 (347)
                      |+||+.||+|+||+
T Consensus       424 l~s~~~dG~I~iw~  437 (437)
T 3gre_A          424 LVACDNSGLIGIFQ  437 (437)
T ss_dssp             EEEEETTSCEEEEC
T ss_pred             EEEEcCCceEEEeC
Confidence            99999999999996

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=7.4e-37  Score=274.60  Aligned_cols=254  Identities=21%  Similarity=0.285  Sum_probs=209.8

Q ss_pred             eEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEE
Q 036314           55 VCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMV  134 (347)
Q Consensus        55 ~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l  134 (347)
                      .....|.+|.+.|.+++|+|++    ..|+||+.||+|++||..+++         ....+..|...|.+++|+|++..+
T Consensus        55 ~~~~~l~gH~~~V~~~~~s~d~----~~l~s~s~Dg~v~vWd~~~~~---------~~~~~~~~~~~v~~~~~sp~g~~l  121 (354)
T 2pbi_B           55 KTRRTLKGHGNKVLCMDWCKDK----RRIVSSSQDGKVIVWDSFTTN---------KEHAVTMPCTWVMACAYAPSGCAI  121 (354)
T ss_dssp             CEEEEEECCSSCEEEEEECTTS----SEEEEEETTSEEEEEETTTCC---------EEEEEECSSSCCCEEEECTTSSEE
T ss_pred             EEEEEecCCCCeEEEEEECCCC----CEEEEEeCCCeEEEEECCCCC---------cceEEecCCCCEEEEEECCCCCEE
Confidence            4567899999999999999854    479999999999999986543         334567789999999999999999


Q ss_pred             EEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEeC-CCCeEEEEecCCcEEEEE
Q 036314          135 CSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWP-QQETIYSASWDHSVRTWD  213 (347)
Q Consensus       135 ~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~l~s~s~dg~v~vwd  213 (347)
                      ++|+.|+++++|++........                   ......+.+|...|.++.|+ ++..|++++.|++|++||
T Consensus       122 asg~~d~~i~v~~~~~~~~~~~-------------------~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd  182 (354)
T 2pbi_B          122 ACGGLDNKCSVYPLTFDKNENM-------------------AAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWD  182 (354)
T ss_dssp             EEESTTSEEEEEECCCCTTCCS-------------------GGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEE
T ss_pred             EEeeCCCCEEEEEEeccccccc-------------------cccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEe
Confidence            9999999999999864321100                   11234566799999999984 667899999999999999


Q ss_pred             CCCCceeeeeee-CeeeEEEEeeCC-CCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEE
Q 036314          214 VEMGKDLSDIFC-GKALNCIDIGGE-GSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISA  291 (347)
Q Consensus       214 ~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~  291 (347)
                      +++++.+..+.. ...+.++++.+. ++.+|++|+.|++|++||++..   .....+.+|...|.+++|+|++. +|++|
T Consensus       183 ~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~---~~~~~~~~h~~~v~~v~~~p~~~-~l~s~  258 (354)
T 2pbi_B          183 VESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSG---QCVQAFETHESDVNSVRYYPSGD-AFASG  258 (354)
T ss_dssp             TTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTC---CEEEEECCCSSCEEEEEECTTSS-EEEEE
T ss_pred             CCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCC---cEEEEecCCCCCeEEEEEeCCCC-EEEEE
Confidence            999988877764 356888888764 4578999999999999999753   34678889999999999999986 69999


Q ss_pred             eCCCcEEEEEcCCCccceeecCC--CCeEEEEeecC-CCEEEEccCCceEEEeecc
Q 036314          292 SYDGKVMLWDLRTAWPLSVIDSH--KDKVLCADWWR-GDSVISGGVDSKLCVSSGV  344 (347)
Q Consensus       292 s~D~~i~lwd~~~~~~~~~~~~h--~~~v~~~~~~~-~~~l~s~s~D~~v~vw~~~  344 (347)
                      +.|++|++||++.+..+..+..+  ...+.+++|++ |.+|++|+.|++|+||+..
T Consensus       259 s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~  314 (354)
T 2pbi_B          259 SDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVL  314 (354)
T ss_dssp             ETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             eCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECC
Confidence            99999999999988766665433  35789999985 7789999999999999863

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=9e-37  Score=272.80  Aligned_cols=254  Identities=22%  Similarity=0.343  Sum_probs=200.2

Q ss_pred             eEEEEeeccCCceEEEEE-----eecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeC
Q 036314           55 VCTHILEGHCGAVSSVNI-----IKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAET  129 (347)
Q Consensus        55 ~~~~~l~~h~~~V~~v~~-----~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~  129 (347)
                      .+...|.+|.+.|.+++|     ++.   ++..|+||+.|++|++||+...+...  ....+...+.+|..+|.+++|+|
T Consensus        12 ~~~~~l~gH~~~V~~~~~~~s~~~~~---d~~~l~sgs~D~~v~iWd~~~~~~~~--~~~~~~~~l~~h~~~V~~~~~~~   86 (343)
T 2xzm_R           12 VKRGILEGHSDWVTSIVAGFSQKENE---DSPVLISGSRDKTVMIWKLYEEEQNG--YFGIPHKALTGHNHFVSDLALSQ   86 (343)
T ss_dssp             EEEEEEECCSSCEEEEEECCCSSTTC---CCCEEEEEETTSCEEEEEECSSCCSS--BSEEEEEEECCCSSCEEEEEECS
T ss_pred             eeeeeeccchhhhhheeeEEEeecCC---CCCEEEEEcCCCEEEEEECCcCCccc--ccccccchhccCCCceEEEEECC
Confidence            356789999999999999     432   33579999999999999987543110  11234567889999999999999


Q ss_pred             CCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEe-CCCCeEEEEecCCc
Q 036314          130 SGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW-PQQETIYSASWDHS  208 (347)
Q Consensus       130 ~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~l~s~s~dg~  208 (347)
                      ++.++++|+.|++|++||+.++                         +.+..+.+|...|.+++| |++++|++++.|++
T Consensus        87 ~~~~l~s~s~D~~v~lwd~~~~-------------------------~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~  141 (343)
T 2xzm_R           87 ENCFAISSSWDKTLRLWDLRTG-------------------------TTYKRFVGHQSEVYSVAFSPDNRQILSAGAERE  141 (343)
T ss_dssp             STTEEEEEETTSEEEEEETTSS-------------------------CEEEEEECCCSCEEEEEECSSTTEEEEEETTSC
T ss_pred             CCCEEEEEcCCCcEEEEECCCC-------------------------cEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCE
Confidence            9999999999999999998753                         335567889999999998 57889999999999


Q ss_pred             EEEEECCCCceeeee---eeCeeeEEEEeeCCC---------CcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCee
Q 036314          209 VRTWDVEMGKDLSDI---FCGKALNCIDIGGEG---------SALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWIS  276 (347)
Q Consensus       209 v~vwd~~~~~~~~~~---~~~~~~~~~~~~~~~---------~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~  276 (347)
                      |++||+.........   .+...+.++.++|..         ..++++++.|+.|++||..    ......+.+|...|.
T Consensus       142 i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~----~~~~~~~~~h~~~v~  217 (343)
T 2xzm_R          142 IKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN----FQIRYTFKAHESNVN  217 (343)
T ss_dssp             EEEEESSSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT----TEEEEEEECCSSCEE
T ss_pred             EEEEeccCCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC----CceeEEEcCccccce
Confidence            999999743222111   123468889987654         2578999999999999953    234567889999999


Q ss_pred             EEEeCCCCCeEEEEEeCCCcEEEEEcCCC-ccceeecCCCCeEEEEeecCCCEEEEccCCceEEEeecc
Q 036314          277 ACKWHNKSWFHLISASYDGKVMLWDLRTA-WPLSVIDSHKDKVLCADWWRGDSVISGGVDSKLCVSSGV  344 (347)
Q Consensus       277 ~v~~s~~~~~~l~s~s~D~~i~lwd~~~~-~~~~~~~~h~~~v~~~~~~~~~~l~s~s~D~~v~vw~~~  344 (347)
                      +++|+|++. +|++|+.|++|++||++.. .+...+ .|...|.+++|+|...+++++.|+.|++|+..
T Consensus       218 ~~~~s~~g~-~l~sgs~dg~v~iwd~~~~~~~~~~~-~~~~~v~~v~~sp~~~~la~~~d~~v~iw~~~  284 (343)
T 2xzm_R          218 HLSISPNGK-YIATGGKDKKLLIWDILNLTYPQREF-DAGSTINQIAFNPKLQWVAVGTDQGVKIFNLM  284 (343)
T ss_dssp             EEEECTTSS-EEEEEETTCEEEEEESSCCSSCSEEE-ECSSCEEEEEECSSSCEEEEEESSCEEEEESS
T ss_pred             EEEECCCCC-EEEEEcCCCeEEEEECCCCcccceee-cCCCcEEEEEECCCCCEEEEECCCCEEEEEeC
Confidence            999999986 5999999999999999543 344444 34567999999986666667789999999864

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.5e-37  Score=280.31  Aligned_cols=293  Identities=16%  Similarity=0.231  Sum_probs=226.4

Q ss_pred             CcCCceeeccCC-CCC-EEEEEecCCeEEEEcC----C-Ce------EEEEeec----------cCCceEEEEEeecCCC
Q 036314           22 LHDDWVSAVDGS-NPG-FILTGCYDNLGRVWKA----G-GV------CTHILEG----------HCGAVSSVNIIKSDGL   78 (347)
Q Consensus        22 ~h~~~v~~~~~~-~~~-~l~sg~~d~~i~iw~~----~-~~------~~~~l~~----------h~~~V~~v~~~~~~~~   78 (347)
                      .|.+.|++++++ ++. +||+|+.|++|++|+.    . +.      ....+..          |.+.|.+++|+|++  
T Consensus        43 ~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~--  120 (425)
T 1r5m_A           43 VKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDG--  120 (425)
T ss_dssp             EECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTS--
T ss_pred             eccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCC--
Confidence            566999999998 567 9999999999999998    5 33      2334444          68899999999844  


Q ss_pred             ceEEEEEccCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccc
Q 036314           79 KYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQV  158 (347)
Q Consensus        79 ~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~  158 (347)
                        ..|++++.||+|++||...          +....+.+|..+|.+++|+|++++|++++.|+.|++||+.+......  
T Consensus       121 --~~l~~~~~dg~i~i~~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~--  186 (425)
T 1r5m_A          121 --NSIVTGVENGELRLWNKTG----------ALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQH--  186 (425)
T ss_dssp             --SEEEEEETTSCEEEEETTS----------CEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEE--
T ss_pred             --CEEEEEeCCCeEEEEeCCC----------CeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEE--
Confidence              3799999999999999432          24556788999999999999999999999999999999876421100  


Q ss_pred             eeeeccCCCccccccccccccccccCCccceEEEEeCCCCeEEEEecCCcEEEEECCCCceeeeeee-CeeeEEEEeeCC
Q 036314          159 SIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWPQQETIYSASWDHSVRTWDVEMGKDLSDIFC-GKALNCIDIGGE  237 (347)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~-~~~~~~~~~~~~  237 (347)
                        .......   ..   .............+.++.|.++..+++++.|+.|++||+++++.+..+.. ...+.+++++++
T Consensus       187 --~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~  258 (425)
T 1r5m_A          187 --FELKETG---GS---SINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDT  258 (425)
T ss_dssp             --ECCC---------------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETT
T ss_pred             --eeccccC---cc---ceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCC
Confidence              0000000   00   00000011111226667776667899999999999999998877766643 457889999875


Q ss_pred             CCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecCCCCe
Q 036314          238 GSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDK  317 (347)
Q Consensus       238 ~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h~~~  317 (347)
                      + .++++++.|+.|++||++..   .....+.+|...|.++.|+|++  +|++++.|+.|++||+++++.+..+..|...
T Consensus       259 ~-~~l~~~~~d~~i~i~d~~~~---~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~  332 (425)
T 1r5m_A          259 N-KLLLSASDDGTLRIWHGGNG---NSQNCFYGHSQSIVSASWVGDD--KVISCSMDGSVRLWSLKQNTLLALSIVDGVP  332 (425)
T ss_dssp             T-TEEEEEETTSCEEEECSSSB---SCSEEECCCSSCEEEEEEETTT--EEEEEETTSEEEEEETTTTEEEEEEECTTCC
T ss_pred             C-CEEEEEcCCCEEEEEECCCC---ccceEecCCCccEEEEEECCCC--EEEEEeCCCcEEEEECCCCcEeEecccCCcc
Confidence            4 58889999999999998753   3466778899999999999998  6999999999999999999989999999999


Q ss_pred             EEEEeecC-CCEEEEccCCceEEEeecc
Q 036314          318 VLCADWWR-GDSVISGGVDSKLCVSSGV  344 (347)
Q Consensus       318 v~~~~~~~-~~~l~s~s~D~~v~vw~~~  344 (347)
                      |.++.|+| +++|++++.|+.|++|+..
T Consensus       333 i~~~~~s~~~~~l~~~~~dg~i~i~~~~  360 (425)
T 1r5m_A          333 IFAGRISQDGQKYAVAFMDGQVNVYDLK  360 (425)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEECH
T ss_pred             EEEEEEcCCCCEEEEEECCCeEEEEECC
Confidence            99999985 7789999999999999864

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=1.8e-36  Score=280.12  Aligned_cols=272  Identities=26%  Similarity=0.462  Sum_probs=231.1

Q ss_pred             CCCCcCCce-eeccCCCCCEEEEEecCCeEEEEcC-CCeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEe
Q 036314           19 EPSLHDDWV-SAVDGSNPGFILTGCYDNLGRVWKA-GGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWK   96 (347)
Q Consensus        19 ~~~~h~~~v-~~~~~~~~~~l~sg~~d~~i~iw~~-~~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd   96 (347)
                      ...+|.+.| +++.+ ++++|++|+.||+|++||. .+.+...+.+|.+.|.++.|.+      ..|++++.||+|++||
T Consensus       113 ~l~~h~~~v~~~~~~-~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~------~~l~s~~~dg~i~vwd  185 (445)
T 2ovr_B          113 VLKGHDDHVITCLQF-CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD------NIIISGSTDRTLKVWN  185 (445)
T ss_dssp             EEECSTTSCEEEEEE-ETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEET------TEEEEEETTSCEEEEE
T ss_pred             EecccCCCcEEEEEE-cCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEecC------CEEEEEeCCCeEEEEE
Confidence            456888864 66665 4789999999999999997 4788889999999999999973      2699999999999999


Q ss_pred             ccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccc
Q 036314           97 FDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEG  176 (347)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (347)
                      +.+++         ....+.+|...|.+++|+  ++.+++|+.|++|++||+.+.                         
T Consensus       186 ~~~~~---------~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~-------------------------  229 (445)
T 2ovr_B          186 AETGE---------CIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETG-------------------------  229 (445)
T ss_dssp             TTTTE---------EEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSC-------------------------
T ss_pred             CCcCc---------EEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCC-------------------------
Confidence            98764         456778999999999985  578999999999999998753                         


Q ss_pred             cccccccCCccceEEEEeCCCCeEEEEecCCcEEEEECCCCceeeeeee-CeeeEEEEeeCCCCcEEEEecCCCcEEEEe
Q 036314          177 EAISTLVGHTQCVSSVVWPQQETIYSASWDHSVRTWDVEMGKDLSDIFC-GKALNCIDIGGEGSALIAAGGSDPILRIWD  255 (347)
Q Consensus       177 ~~~~~~~~h~~~v~~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~la~~~~d~~i~iwd  255 (347)
                      +.+..+.+|...|.++.+ +++.+++++.|+.|++||+++++.+..+.. ...+.++.+   ++..+++++.|+.|++||
T Consensus       230 ~~~~~~~~~~~~v~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~---~~~~l~~~~~d~~i~i~d  305 (445)
T 2ovr_B          230 QCLHVLMGHVAAVRCVQY-DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF---DGIHVVSGSLDTSIRVWD  305 (445)
T ss_dssp             CEEEEEECCSSCEEEEEE-CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE---CSSEEEEEETTSCEEEEE
T ss_pred             cEEEEEcCCcccEEEEEE-CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE---CCCEEEEEeCCCeEEEEE
Confidence            234566789999999998 778899999999999999999888777653 346788887   346889999999999999


Q ss_pred             CCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecC---CCCeEEEEeecCCCEEEEc
Q 036314          256 PRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDS---HKDKVLCADWWRGDSVISG  332 (347)
Q Consensus       256 ~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~---h~~~v~~~~~~~~~~l~s~  332 (347)
                      ++..   .....+.+|...+.++.++++   +|++|+.||.|++||+++++.+..+.+   |...|.++.|. +++|++|
T Consensus       306 ~~~~---~~~~~~~~~~~~v~~~~~~~~---~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~s~  378 (445)
T 2ovr_B          306 VETG---NCIHTLTGHQSLTSGMELKDN---ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN-KNFVITS  378 (445)
T ss_dssp             TTTC---CEEEEECCCCSCEEEEEEETT---EEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC-SSEEEEE
T ss_pred             CCCC---CEEEEEcCCcccEEEEEEeCC---EEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC-CCEEEEE
Confidence            9753   346788899999999988643   699999999999999999988888876   88999999995 6799999


Q ss_pred             cCCceEEEeecc
Q 036314          333 GVDSKLCVSSGV  344 (347)
Q Consensus       333 s~D~~v~vw~~~  344 (347)
                      +.||+|+||+..
T Consensus       379 ~~dg~v~iwd~~  390 (445)
T 2ovr_B          379 SDDGTVKLWDLK  390 (445)
T ss_dssp             ETTSEEEEEETT
T ss_pred             eCCCeEEEEECC
Confidence            999999999864

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=8.7e-37  Score=271.68  Aligned_cols=284  Identities=12%  Similarity=0.117  Sum_probs=225.5

Q ss_pred             CCCCcCCceeeccCC-CCCEEEEEecCCeEEEEcCC-Ce---EEEEeeccCCceEEEEEeecCCCceE-EEEEccCCCcE
Q 036314           19 EPSLHDDWVSAVDGS-NPGFILTGCYDNLGRVWKAG-GV---CTHILEGHCGAVSSVNIIKSDGLKYV-TVATASKDQTL   92 (347)
Q Consensus        19 ~~~~h~~~v~~~~~~-~~~~l~sg~~d~~i~iw~~~-~~---~~~~l~~h~~~V~~v~~~~~~~~~~~-~l~s~s~Dg~v   92 (347)
                      ...+|.+.|++++++ ++.+|++++.|++|++|+.. +.   ....+.+|...|.+++|+|++    . .|++++.||+|
T Consensus         6 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~~l~~~~~dg~i   81 (342)
T 1yfq_A            6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNT----DLQIYVGTVQGEI   81 (342)
T ss_dssp             CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESS----SEEEEEEETTSCE
T ss_pred             cccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCC----CcEEEEEcCCCeE
Confidence            345899999999998 56799999999999999964 32   355677999999999999953    4 68999999999


Q ss_pred             EEEec-cccccccCccccceeeeeec--cccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCcc
Q 036314           93 RLWKF-DAEELVNHPKKIRSFKILRG--HKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQV  169 (347)
Q Consensus        93 ~~wd~-~~~~~~~~~~~~~~~~~~~~--h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~  169 (347)
                      ++||+ ..++          ...+.+  |...|.+++|+| ++++++++.|++|++||+.......  .           
T Consensus        82 ~~wd~~~~~~----------~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~--~-----------  137 (342)
T 1yfq_A           82 LKVDLIGSPS----------FQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGV--I-----------  137 (342)
T ss_dssp             EEECSSSSSS----------EEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBC--E-----------
T ss_pred             EEEEeccCCc----------eEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEccccccccc--c-----------
Confidence            99998 7653          245678  999999999999 9999999999999999976310000  0           


Q ss_pred             ccccccccccccccCCccceEEEEeCCCCeEEEEecCCcEEEEECCC-Cceeee-e--eeCeeeEEEEeeCCCCcEEEEe
Q 036314          170 EEPQLEGEAISTLVGHTQCVSSVVWPQQETIYSASWDHSVRTWDVEM-GKDLSD-I--FCGKALNCIDIGGEGSALIAAG  245 (347)
Q Consensus       170 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~dg~v~vwd~~~-~~~~~~-~--~~~~~~~~~~~~~~~~~~la~~  245 (347)
                         ...++.+..+. |...+.++.|.++. +++++.|+.|++||++. +..... .  .....+.++++.+.++..++++
T Consensus       138 ---~~~~~~~~~~~-~~~~v~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~  212 (342)
T 1yfq_A          138 ---AVKNLNSNNTK-VKNKIFTMDTNSSR-LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACS  212 (342)
T ss_dssp             ---EEEESCSSSSS-SCCCEEEEEECSSE-EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEE
T ss_pred             ---cccCCeeeEEe-eCCceEEEEecCCc-EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEE
Confidence               00012233344 77889999986544 99999999999999987 543221 1  2345688999976134688999


Q ss_pred             cCCCcEEEEeCCCCCC---CCCeEEecCCCC---------CeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecC
Q 036314          246 GSDPILRIWDPRKPGT---SAPVFQFSSHNS---------WISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDS  313 (347)
Q Consensus       246 ~~d~~i~iwd~~~~~~---~~~~~~~~~h~~---------~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~  313 (347)
                      +.|+.|++||++....   ......+..|..         .|.+++|+|++. +|++++.||.|++||+++++.+..+.+
T Consensus       213 ~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~  291 (342)
T 1yfq_A          213 SIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHK-FLYTAGSDGIISCWNLQTRKKIKNFAK  291 (342)
T ss_dssp             ETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTC-CEEEEETTSCEEEEETTTTEEEEECCC
T ss_pred             ecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCC-EEEEecCCceEEEEcCccHhHhhhhhc
Confidence            9999999999875410   134667778865         899999999986 599999999999999999998999999


Q ss_pred             C-CCeEEEEeecCCCEEEEccCCce
Q 036314          314 H-KDKVLCADWWRGDSVISGGVDSK  337 (347)
Q Consensus       314 h-~~~v~~~~~~~~~~l~s~s~D~~  337 (347)
                      | .+.|.+++ .++++|++++.|++
T Consensus       292 ~h~~~v~~~~-~~~~~l~s~s~Dg~  315 (342)
T 1yfq_A          292 FNEDSVVKIA-CSDNILCLATSDDT  315 (342)
T ss_dssp             CSSSEEEEEE-ECSSEEEEEEECTH
T ss_pred             ccCCCceEec-CCCCeEEEEecCCc
Confidence            8 99999999 77889999999998

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.2e-36  Score=277.68  Aligned_cols=278  Identities=20%  Similarity=0.269  Sum_probs=224.3

Q ss_pred             CcCCc--eeeccCCCCCEEEEEecCCeEEEEcCC-CeEEEEeec-cCCceEEEEEeecCCCceEEEEEccCCCcEEEEec
Q 036314           22 LHDDW--VSAVDGSNPGFILTGCYDNLGRVWKAG-GVCTHILEG-HCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKF   97 (347)
Q Consensus        22 ~h~~~--v~~~~~~~~~~l~sg~~d~~i~iw~~~-~~~~~~l~~-h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~   97 (347)
                      +|.+.  +.++++++ +.+++++.|++|++|+.. +.....+.. |...|.+++|+|++    ..|++++.||.|++||+
T Consensus        89 ~~~~~~~~~~~~~s~-~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~----~~l~~~~~dg~i~iwd~  163 (401)
T 4aez_A           89 GIIDDYYLNLLDWSN-LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDG----SFLSVGLGNGLVDIYDV  163 (401)
T ss_dssp             TCCCCTTCBCEEECT-TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTS----SEEEEEETTSCEEEEET
T ss_pred             CCcCCceEEEEeecC-CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCC----CEEEEECCCCeEEEEEC
Confidence            44443  33344443 568889999999999975 566666554 88999999999844    37999999999999998


Q ss_pred             cccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCcccccccccc
Q 036314           98 DAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGE  177 (347)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (347)
                      .+++         ....+.+|...|.+++|  +++.+++|+.|++|++||+....                        .
T Consensus       164 ~~~~---------~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~------------------------~  208 (401)
T 4aez_A          164 ESQT---------KLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIAN------------------------H  208 (401)
T ss_dssp             TTCC---------EEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSS------------------------C
T ss_pred             cCCe---------EEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCc------------------------c
Confidence            7653         45567899999999999  46799999999999999987421                        2


Q ss_pred             ccccccCCccceEEEEe-CCCCeEEEEecCCcEEEEECCCCceeeeee-eCeeeEEEEeeCCCCcEEEEec--CCCcEEE
Q 036314          178 AISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIF-CGKALNCIDIGGEGSALIAAGG--SDPILRI  253 (347)
Q Consensus       178 ~~~~~~~h~~~v~~~~~-~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~la~~~--~d~~i~i  253 (347)
                      ....+.+|...|.++.| +++..|++++.|+.|++||++++..+..+. +...+.++++++.+..++++++  .|+.|++
T Consensus       209 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i  288 (401)
T 4aez_A          209 QIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHF  288 (401)
T ss_dssp             EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEE
T ss_pred             eeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEE
Confidence            34566789999999998 577899999999999999999988776664 3457899999988888888876  7999999


Q ss_pred             EeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEE--EeCCCcEEEEEcCCCccce--eecCCCCeEEEEeecC-CCE
Q 036314          254 WDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLIS--ASYDGKVMLWDLRTAWPLS--VIDSHKDKVLCADWWR-GDS  328 (347)
Q Consensus       254 wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s--~s~D~~i~lwd~~~~~~~~--~~~~h~~~v~~~~~~~-~~~  328 (347)
                      ||++..   .....+. |...|.+++|+|++.. |++  |+.|+.|++||++++....  .+.+|.+.|.+++|+| |.+
T Consensus       289 ~d~~~~---~~~~~~~-~~~~v~~~~~s~~~~~-l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~  363 (401)
T 4aez_A          289 WNAATG---ARVNTVD-AGSQVTSLIWSPHSKE-IMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRI  363 (401)
T ss_dssp             EETTTC---CEEEEEE-CSSCEEEEEECSSSSE-EEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSE
T ss_pred             EECCCC---CEEEEEe-CCCcEEEEEECCCCCe-EEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCE
Confidence            999753   2345553 6678999999999975 666  4489999999999865443  4679999999999985 778


Q ss_pred             EEEccCCceEEEeecc
Q 036314          329 VISGGVDSKLCVSSGV  344 (347)
Q Consensus       329 l~s~s~D~~v~vw~~~  344 (347)
                      |++++.|++|++|+..
T Consensus       364 l~s~~~dg~i~iw~~~  379 (401)
T 4aez_A          364 LSTAASDENLKFWRVY  379 (401)
T ss_dssp             EEEECTTSEEEEEECC
T ss_pred             EEEEeCCCcEEEEECC
Confidence            9999999999999864

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=3.6e-36  Score=275.48  Aligned_cols=298  Identities=18%  Similarity=0.241  Sum_probs=219.8

Q ss_pred             CceeeccCC-CCCEEEEEecCCeEEEEcCC-CeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEecccccc
Q 036314           25 DWVSAVDGS-NPGFILTGCYDNLGRVWKAG-GVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEEL  102 (347)
Q Consensus        25 ~~v~~~~~~-~~~~l~sg~~d~~i~iw~~~-~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~  102 (347)
                      ..+....++ ++.+||+|+.|++|++||.. +.+...+.+|.+.|.+++|+|++    ..|++++.|++|++||+..++ 
T Consensus        98 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~----~~l~s~s~d~~i~iwd~~~~~-  172 (420)
T 3vl1_A           98 DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSG----EALISSSQDMQLKIWSVKDGS-  172 (420)
T ss_dssp             CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTS----SEEEEEETTSEEEEEETTTCC-
T ss_pred             CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCC----CEEEEEeCCCeEEEEeCCCCc-
Confidence            334443455 56799999999999999975 56677788999999999999854    379999999999999997654 


Q ss_pred             ccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccC--CCcccccc-cccccc
Q 036314          103 VNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKG--NNQVEEPQ-LEGEAI  179 (347)
Q Consensus       103 ~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~  179 (347)
                              ....+.+|..+|.+++|+|++++|++++.|++|++||+.+......    .....  ...+.... ......
T Consensus       173 --------~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~  240 (420)
T 3vl1_A          173 --------NPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHT----FNRKENPHDGVNSIALFVGTDR  240 (420)
T ss_dssp             --------CCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEE----ECBTTBTTCCEEEEEEEECCCS
T ss_pred             --------CceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEE----eecCCCCCCCccEEEEecCCcc
Confidence                    3456789999999999999999999999999999999876432100    00000  00000000 000000


Q ss_pred             ccccCCccceEEEEe-CCCCeEEEEecCCcEEEEECCCCceeeeeee--CeeeEEEEeeCCCCcEEEEecCCCcEEEEeC
Q 036314          180 STLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFC--GKALNCIDIGGEGSALIAAGGSDPILRIWDP  256 (347)
Q Consensus       180 ~~~~~h~~~v~~~~~-~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~  256 (347)
                      .....+...+.+++| ++++.|++++.||.|++||+++++.+..+..  ...+.++++++++..++++|+.|+.|++||+
T Consensus       241 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~  320 (420)
T 3vl1_A          241 QLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDL  320 (420)
T ss_dssp             SCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEET
T ss_pred             eeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEc
Confidence            011223445555666 5677899999999999999999887766653  3468999998877658999999999999999


Q ss_pred             CCCCCCCCeEEecC-CCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCc---------cceeecCCCCeEEEEeecC-
Q 036314          257 RKPGTSAPVFQFSS-HNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAW---------PLSVIDSHKDKVLCADWWR-  325 (347)
Q Consensus       257 ~~~~~~~~~~~~~~-h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~---------~~~~~~~h~~~v~~~~~~~-  325 (347)
                      +....  ++..+.+ |...|.++.+. ++ .+|++++.|++|++||+....         ....+.+|.+.|.+++|+| 
T Consensus       321 ~~~~~--~~~~~~~~~~~~v~~~~~~-~~-~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  396 (420)
T 3vl1_A          321 RSPEC--PVGEFLINEGTPINNVYFA-AG-ALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSD  396 (420)
T ss_dssp             TCTTS--CSEEEEESTTSCEEEEEEE-TT-EEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECC
T ss_pred             CCCcC--chhhhhccCCCCceEEEeC-CC-CEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccC
Confidence            86432  3455655 66677777664 55 479999999999999998742         2234567889999999975 


Q ss_pred             CC---EEEEccCCceEEEeec
Q 036314          326 GD---SVISGGVDSKLCVSSG  343 (347)
Q Consensus       326 ~~---~l~s~s~D~~v~vw~~  343 (347)
                      +.   .|++++.+|.+.+|+.
T Consensus       397 ~~~~g~l~a~g~~g~~~~~~~  417 (420)
T 3vl1_A          397 DESNGEVLEVGKNNFCALYNL  417 (420)
T ss_dssp             SSSSCEEEEEETTTEEEEEES
T ss_pred             CCCcceEEEEcCCceEEEEec
Confidence            55   5788888999999985

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=6.6e-36  Score=276.37  Aligned_cols=272  Identities=26%  Similarity=0.445  Sum_probs=230.3

Q ss_pred             CCCcCCceeeccCCCCCEEEEEecCCeEEEEcCC-CeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEecc
Q 036314           20 PSLHDDWVSAVDGSNPGFILTGCYDNLGRVWKAG-GVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFD   98 (347)
Q Consensus        20 ~~~h~~~v~~~~~~~~~~l~sg~~d~~i~iw~~~-~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~   98 (347)
                      ..+|...|++++++ +++|++|+.|++|++||.. +.+...+.+|...|.++.|.+      ..|++++.||+|++||+.
T Consensus       155 ~~~h~~~v~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~------~~l~s~s~dg~i~~wd~~  227 (445)
T 2ovr_B          155 LVGHTGGVWSSQMR-DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHE------KRVVSGSRDATLRVWDIE  227 (445)
T ss_dssp             CCCCSSCEEEEEEE-TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEET------TEEEEEETTSEEEEEESS
T ss_pred             EcCCCCCEEEEEec-CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEecC------CEEEEEeCCCEEEEEECC
Confidence            55899999999986 6799999999999999974 778889999999999999864      258999999999999997


Q ss_pred             ccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccc
Q 036314           99 AEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEA  178 (347)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (347)
                      +++         ....+.+|..+|.+++|  +++++++|+.|++|++||+.+.                         +.
T Consensus       228 ~~~---------~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~-------------------------~~  271 (445)
T 2ovr_B          228 TGQ---------CLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETE-------------------------TC  271 (445)
T ss_dssp             SCC---------EEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGT-------------------------EE
T ss_pred             CCc---------EEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCC-------------------------cE
Confidence            654         45677899999999998  7889999999999999998643                         34


Q ss_pred             cccccCCccceEEEEeCCCCeEEEEecCCcEEEEECCCCceeeeeeeC-eeeEEEEeeCCCCcEEEEecCCCcEEEEeCC
Q 036314          179 ISTLVGHTQCVSSVVWPQQETIYSASWDHSVRTWDVEMGKDLSDIFCG-KALNCIDIGGEGSALIAAGGSDPILRIWDPR  257 (347)
Q Consensus       179 ~~~~~~h~~~v~~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~  257 (347)
                      +..+.+|...|.++.| ++..+++++.|+.|++||+++++.+..+..+ ..+.++.+.   +..+++++.|+.|++||++
T Consensus       272 ~~~~~~~~~~v~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~dg~i~vwd~~  347 (445)
T 2ovr_B          272 LHTLQGHTNRVYSLQF-DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK---DNILVSGNADSTVKIWDIK  347 (445)
T ss_dssp             EEEECCCSSCEEEEEE-CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE---TTEEEEEETTSCEEEEETT
T ss_pred             eEEecCCCCceEEEEE-CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEe---CCEEEEEeCCCeEEEEECC
Confidence            5567789999999998 7789999999999999999999887776543 345666663   3488999999999999997


Q ss_pred             CCCCCCCeEEecC---CCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceee-----cCCCCeEEEEeecC-CCE
Q 036314          258 KPGTSAPVFQFSS---HNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVI-----DSHKDKVLCADWWR-GDS  328 (347)
Q Consensus       258 ~~~~~~~~~~~~~---h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~-----~~h~~~v~~~~~~~-~~~  328 (347)
                      ..   .....+.+   |...|.+++|++   .+|++|+.||.|++||+++++.+..+     .+|.+.|++++|+| +..
T Consensus       348 ~~---~~~~~~~~~~~~~~~v~~~~~~~---~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  421 (445)
T 2ovr_B          348 TG---QCLQTLQGPNKHQSAVTCLQFNK---NFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLV  421 (445)
T ss_dssp             TC---CEEEEECSTTSCSSCEEEEEECS---SEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEE
T ss_pred             CC---cEEEEEccCCCCCCCEEEEEECC---CEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEE
Confidence            53   33566665   888999999974   36999999999999999999888877     47889999999986 556


Q ss_pred             EEEccCCce----EEEeecc
Q 036314          329 VISGGVDSK----LCVSSGV  344 (347)
Q Consensus       329 l~s~s~D~~----v~vw~~~  344 (347)
                      ||+|+.||+    |.||+-.
T Consensus       422 la~~~~dg~~~~~l~v~df~  441 (445)
T 2ovr_B          422 CAVGSRNGTEETKLLVLDFD  441 (445)
T ss_dssp             EEEECSSSSSCCEEEEEECC
T ss_pred             EEEcccCCCCccEEEEEECC
Confidence            899999998    9999864

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=1.1e-36  Score=280.87  Aligned_cols=297  Identities=14%  Similarity=0.251  Sum_probs=219.4

Q ss_pred             CCCCcCCceeeccCC-CCCEEEEEecCCeEEEEcCCC-e-----------EEEEeeccC------------CceEEEEEe
Q 036314           19 EPSLHDDWVSAVDGS-NPGFILTGCYDNLGRVWKAGG-V-----------CTHILEGHC------------GAVSSVNII   73 (347)
Q Consensus        19 ~~~~h~~~v~~~~~~-~~~~l~sg~~d~~i~iw~~~~-~-----------~~~~l~~h~------------~~V~~v~~~   73 (347)
                      ....|.+.|++++|+ ++.+||+|+.||+|++|+... .           +...+.+|.            +.|.+++|+
T Consensus        23 ~~~~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~  102 (447)
T 3dw8_B           23 DDVAEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWL  102 (447)
T ss_dssp             SCCCGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEEC
T ss_pred             ccccccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEc
Confidence            345688999999998 567999999999999999652 2           477899998            889999999


Q ss_pred             ecCCCceEEEEEccCCCcEEEEeccccccccCc----------------c--------------ccceeee-eeccccce
Q 036314           74 KSDGLKYVTVATASKDQTLRLWKFDAEELVNHP----------------K--------------KIRSFKI-LRGHKASV  122 (347)
Q Consensus        74 ~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~----------------~--------------~~~~~~~-~~~h~~~V  122 (347)
                      |+++.  ..|++++.|++|++||+..++.....                .              ...+... +.+|...|
T Consensus       103 ~~~~~--~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v  180 (447)
T 3dw8_B          103 PQKNA--AQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHI  180 (447)
T ss_dssp             CCCSS--SEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCC
T ss_pred             CCCCc--ceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcce
Confidence            86421  36899999999999998764321000                0              0001112 36899999


Q ss_pred             EEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEeC-CC-CeE
Q 036314          123 HSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWP-QQ-ETI  200 (347)
Q Consensus       123 ~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~-~~l  200 (347)
                      .+++|+|++++|++| .|++|++||+.....   .....              ......+.+|...|.+++|. ++ ..|
T Consensus       181 ~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~---~~~~~--------------~~~~~~~~~~~~~v~~~~~~p~~~~~l  242 (447)
T 3dw8_B          181 NSISINSDYETYLSA-DDLRINLWHLEITDR---SFNIV--------------DIKPANMEELTEVITAAEFHPNSCNTF  242 (447)
T ss_dssp             CEEEECTTSSEEEEE-CSSEEEEEETTEEEE---EEEEE--------------ECCCSSGGGCCCCEEEEEECSSCTTEE
T ss_pred             EEEEEcCCCCEEEEe-CCCeEEEEECCCCCc---eeeee--------------ecccccccccCcceEEEEECCCCCcEE
Confidence            999999999999998 899999999873210   00000              00011466799999999994 55 789


Q ss_pred             EEEecCCcEEEEECCCCce----eeeeeeCe-------------eeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCC
Q 036314          201 YSASWDHSVRTWDVEMGKD----LSDIFCGK-------------ALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSA  263 (347)
Q Consensus       201 ~s~s~dg~v~vwd~~~~~~----~~~~~~~~-------------~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~  263 (347)
                      ++++.||+|++||+++++.    +..+..+.             .+.+++++++ +.++++++. +.|++||++...  .
T Consensus       243 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-g~~l~~~~~-~~v~iwd~~~~~--~  318 (447)
T 3dw8_B          243 VYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHS-GRYMMTRDY-LSVKVWDLNMEN--R  318 (447)
T ss_dssp             EEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTT-SSEEEEEES-SEEEEEETTCCS--S
T ss_pred             EEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCC-CCEEEEeeC-CeEEEEeCCCCc--c
Confidence            9999999999999998875    44444332             6889999774 567888888 999999998532  2


Q ss_pred             CeEEecCCCCCe---------------eEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeec----------------
Q 036314          264 PVFQFSSHNSWI---------------SACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVID----------------  312 (347)
Q Consensus       264 ~~~~~~~h~~~v---------------~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~----------------  312 (347)
                      ++..+.+|...+               ..++|+|++. +|++|+.|+.|++||+++++.+ .+.                
T Consensus       319 ~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~-~l~s~s~dg~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~  396 (447)
T 3dw8_B          319 PVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDS-VVMTGSYNNFFRMFDRNTKRDI-TLEASRENNKPRTVLKPRK  396 (447)
T ss_dssp             CSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSS-EEEEECSTTEEEEEETTTCCEE-EEECCSTTCCTTCBCCCCC
T ss_pred             ccceeeccccccccccccccccccccceEEEECCCCC-EEEEeccCCEEEEEEcCCCcce-eeeecccccccccccCCcc
Confidence            355677776422               2389999986 5899999999999999987643 222                


Q ss_pred             -----------------CCCCeEEEEeecC-CCEEEEccCCceEEEee
Q 036314          313 -----------------SHKDKVLCADWWR-GDSVISGGVDSKLCVSS  342 (347)
Q Consensus       313 -----------------~h~~~v~~~~~~~-~~~l~s~s~D~~v~vw~  342 (347)
                                       .+...|+.++|+| +++||+++.|+ +.+|.
T Consensus       397 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~  443 (447)
T 3dw8_B          397 VCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQ  443 (447)
T ss_dssp             EECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEE
T ss_pred             ccccCCcccccccccccccCCceeEEEECCCCCEEEEEecce-eeeec
Confidence                             2345788999986 67888888776 66775

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=1.1e-35  Score=276.05  Aligned_cols=299  Identities=19%  Similarity=0.310  Sum_probs=232.0

Q ss_pred             CCCCcCCce-eeccCCCCCEEEEEecCCeEEEEcC-CCeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEe
Q 036314           19 EPSLHDDWV-SAVDGSNPGFILTGCYDNLGRVWKA-GGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWK   96 (347)
Q Consensus        19 ~~~~h~~~v-~~~~~~~~~~l~sg~~d~~i~iw~~-~~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd   96 (347)
                      ...+|.+.| +++.+ ++++|+||+.||+|++||. .+.++..+.+|.+.|.+++|++++     .|++|+.||+|++||
T Consensus       116 ~l~~h~~~v~~~~~~-~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-----~l~s~s~dg~i~vwd  189 (464)
T 3v7d_B          116 TLRGHMTSVITCLQF-EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-----ILVSGSTDRTVRVWD  189 (464)
T ss_dssp             EEECCSSSCEEEEEE-ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-----EEEEEETTSCEEEEE
T ss_pred             EEcCCCCCcEEEEEE-CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-----EEEEEeCCCCEEEEE
Confidence            345788774 66666 5679999999999999996 477888999999999999998743     689999999999999


Q ss_pred             ccccccccCccccceeeeeeccccceEEEEEe--CCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccc
Q 036314           97 FDAEELVNHPKKIRSFKILRGHKASVHSIAAE--TSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQL  174 (347)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s--~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (347)
                      +.+++         ....+.+|..+|.+++|+  ++++++++|+.|++|++||+.+..........  .........+..
T Consensus       190 ~~~~~---------~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~--~~~~~~~~~~~~  258 (464)
T 3v7d_B          190 IKKGC---------CTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEE--HDYPLVFHTPEE  258 (464)
T ss_dssp             TTTTE---------EEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC--------CCSSEEESCGGG
T ss_pred             CCCCc---------EEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCccccccccc--CCcceEeeccCC
Confidence            98664         456788999999999998  57899999999999999999865422110000  000000000001


Q ss_pred             cccccccccCCccceEEEEeCCCCeEEEEecCCcEEEEECCCCceeeeeee-CeeeEEEEeeCCCCcEEEEecCCCcEEE
Q 036314          175 EGEAISTLVGHTQCVSSVVWPQQETIYSASWDHSVRTWDVEMGKDLSDIFC-GKALNCIDIGGEGSALIAAGGSDPILRI  253 (347)
Q Consensus       175 ~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~la~~~~d~~i~i  253 (347)
                      .......+.+|...+.++. ++++.+++++.|++|++||+++++.+..+.. ...+.++.++++ +..+++|+.|+.|++
T Consensus       259 ~~~~~~~~~~~~~~v~~~~-~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~sg~~dg~i~v  336 (464)
T 3v7d_B          259 NPYFVGVLRGHMASVRTVS-GHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHE-RKRCISASMDTTIRI  336 (464)
T ss_dssp             CTTEEEEECCCSSCEEEEE-EETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETT-TTEEEEEETTSCEEE
T ss_pred             CeEEEEEccCccceEEEEc-CCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCC-CCEEEEEeCCCcEEE
Confidence            1123456788998888885 5678999999999999999999888777653 457889999775 457889999999999


Q ss_pred             EeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecCCCCeEEEEeec-CCCEEEEc
Q 036314          254 WDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKVLCADWW-RGDSVISG  332 (347)
Q Consensus       254 wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h~~~v~~~~~~-~~~~l~s~  332 (347)
                      ||++..   ..+..+.+|...|.++.|++   .+|++++.||+|++||++++.....+ .|...+..+.|+ ++++|+++
T Consensus       337 wd~~~~---~~~~~~~~h~~~v~~~~~~~---~~l~s~s~dg~v~vwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~  409 (464)
T 3v7d_B          337 WDLENG---ELMYTLQGHTALVGLLRLSD---KFLVSAAADGSIRGWDANDYSRKFSY-HHTNLSAITTFYVSDNILVSG  409 (464)
T ss_dssp             EETTTT---EEEEEECCCSSCEEEEEECS---SEEEEEETTSEEEEEETTTCCEEEEE-ECTTCCCEEEEEECSSEEEEE
T ss_pred             EECCCC---cEEEEEeCCCCcEEEEEEcC---CEEEEEeCCCcEEEEECCCCceeeee-cCCCCccEEEEEeCCCEEEEe
Confidence            999753   35778899999999999984   36999999999999999987655544 355667777886 46678888


Q ss_pred             cCCceEEEeecc
Q 036314          333 GVDSKLCVSSGV  344 (347)
Q Consensus       333 s~D~~v~vw~~~  344 (347)
                      + |++|+||+..
T Consensus       410 ~-dg~i~iwd~~  420 (464)
T 3v7d_B          410 S-ENQFNIYNLR  420 (464)
T ss_dssp             E-TTEEEEEETT
T ss_pred             c-CCeEEEEECC
Confidence            7 9999999865

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.7e-36  Score=299.97  Aligned_cols=307  Identities=14%  Similarity=0.151  Sum_probs=217.4

Q ss_pred             CCcCCceeeccCC-CCCEEEEEecCCeEEEEcCCCeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccc
Q 036314           21 SLHDDWVSAVDGS-NPGFILTGCYDNLGRVWKAGGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDA   99 (347)
Q Consensus        21 ~~h~~~v~~~~~~-~~~~l~sg~~d~~i~iw~~~~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~   99 (347)
                      .+|.+.|++++|+ ++.+||+|+.||+|++|+..+........|...|.+++|+| +.    +|++++.|++|++||+.+
T Consensus        14 ~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fsp-g~----~L~S~s~D~~v~lWd~~~   88 (902)
T 2oaj_A           14 YGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVK-GI----YLVVINAKDTVYVLSLYS   88 (902)
T ss_dssp             EECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECSSCCCEEEEEEET-TT----EEEEEETTCEEEEEETTT
T ss_pred             cCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcCCCCCEEEEEEcC-CC----EEEEEECcCeEEEEECCC
Confidence            4899999999998 46799999999999999986544333445888999999998 32    699999999999999987


Q ss_pred             cccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCC---------------c--cc-eee
Q 036314          100 EELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAG---------------N--QV-SIK  161 (347)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~---------------~--~~-~~~  161 (347)
                      ++         .+..+. |...|++++|+|+++++++|+.||+|++||+.+.....               .  .+ .+.
T Consensus        89 ~~---------~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~  158 (902)
T 2oaj_A           89 QK---------VLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQ  158 (902)
T ss_dssp             CS---------EEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEE
T ss_pred             Cc---------EEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEE
Confidence            64         334443 67889999999999999999999999999997653210               0  00 000


Q ss_pred             ecc----------CCCccccccc-ccccccccc------------------CCccceEEEEe-CCCCeEEEEecCCcEEE
Q 036314          162 KRK----------GNNQVEEPQL-EGEAISTLV------------------GHTQCVSSVVW-PQQETIYSASWDHSVRT  211 (347)
Q Consensus       162 ~~~----------~~~~~~~~~~-~~~~~~~~~------------------~h~~~v~~~~~-~~~~~l~s~s~dg~v~v  211 (347)
                      ..+          ....+ .... .+..+..+.                  .|...|.+++| |++.+|++++.|++|++
T Consensus       159 ~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~l  237 (902)
T 2oaj_A          159 WNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVF  237 (902)
T ss_dssp             EETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEE
T ss_pred             EccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEE
Confidence            000          00000 0000 112222333                  34578999999 57889999999999999


Q ss_pred             EECCCCceeee--ee-----------------eCeeeEEEEee-------------------------------------
Q 036314          212 WDVEMGKDLSD--IF-----------------CGKALNCIDIG-------------------------------------  235 (347)
Q Consensus       212 wd~~~~~~~~~--~~-----------------~~~~~~~~~~~-------------------------------------  235 (347)
                      ||+++++.+..  +.                 ....+.+++|.                                     
T Consensus       238 Wd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~  317 (902)
T 2oaj_A          238 WDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYS  317 (902)
T ss_dssp             EETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGG
T ss_pred             EECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCcc
Confidence            99976654321  00                 00000000000                                     


Q ss_pred             --------------------------------------------------------------------------------
Q 036314          236 --------------------------------------------------------------------------------  235 (347)
Q Consensus       236 --------------------------------------------------------------------------------  235 (347)
                                                                                                      
T Consensus       318 ~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l  397 (902)
T 2oaj_A          318 ITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNL  397 (902)
T ss_dssp             GCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGG
T ss_pred             ccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcc
Confidence                                                                                            


Q ss_pred             ----------------------------------------------CCCCcEEEEecCCCcEEEEeCCCCCCCC-CeEE-
Q 036314          236 ----------------------------------------------GEGSALIAAGGSDPILRIWDPRKPGTSA-PVFQ-  267 (347)
Q Consensus       236 ----------------------------------------------~~~~~~la~~~~d~~i~iwd~~~~~~~~-~~~~-  267 (347)
                                                                    .+++.++++|+.|++|++||+....... .... 
T Consensus       398 ~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~  477 (902)
T 2oaj_A          398 SWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEV  477 (902)
T ss_dssp             TTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEE
T ss_pred             cccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEe
Confidence                                                          0123467888888888888876532110 1112 


Q ss_pred             -ec-----CCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCc-----------------------------------
Q 036314          268 -FS-----SHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAW-----------------------------------  306 (347)
Q Consensus       268 -~~-----~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~-----------------------------------  306 (347)
                       +.     +|...|.+++|+|++. +||+|+.|++|+|||+.+++                                   
T Consensus       478 ~l~~~~~~~h~~~V~svafspdg~-~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  556 (902)
T 2oaj_A          478 NLSRTLNKAKELAVDKISFAAETL-ELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDR  556 (902)
T ss_dssp             EHHHHTTCSSSCCEEEEEEETTTT-EEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGG
T ss_pred             echhhcCCCCCCceeEEEecCCCC-eEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCcccccccccc
Confidence             12     7889999999999996 59999999999999998662                                   


Q ss_pred             ----------cceeecCCCCeEEEEeecCCCEEEEccCCceEEEeecc
Q 036314          307 ----------PLSVIDSHKDKVLCADWWRGDSVISGGVDSKLCVSSGV  344 (347)
Q Consensus       307 ----------~~~~~~~h~~~v~~~~~~~~~~l~s~s~D~~v~vw~~~  344 (347)
                                ++.++.+|.+.|++++|+|+.+||+|+.|++|+||+..
T Consensus       557 ~~~~~~~g~~~~~~l~~h~~~V~svafSpdG~lAsgs~D~tv~lwd~~  604 (902)
T 2oaj_A          557 APTGVRQGFMPSTAVHANKGKTSAINNSNIGFVGIAYAAGSLMLIDRR  604 (902)
T ss_dssp             CCTTCSEEEEEEEEECCCSCSEEEEEECBTSEEEEEETTSEEEEEETT
T ss_pred             CCCCCCCccceeEEEEcCCCcEEEEEecCCcEEEEEeCCCcEEEEECC
Confidence                      25678899999999999864499999999999999953

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=5.1e-36  Score=272.92  Aligned_cols=291  Identities=20%  Similarity=0.286  Sum_probs=214.8

Q ss_pred             CCCCcCCceeeccCC-CC----CEEEEEecCCeEEEEcCCCe-----EEEEeeccCCceEEEEEeecCCCceEEEEEccC
Q 036314           19 EPSLHDDWVSAVDGS-NP----GFILTGCYDNLGRVWKAGGV-----CTHILEGHCGAVSSVNIIKSDGLKYVTVATASK   88 (347)
Q Consensus        19 ~~~~h~~~v~~~~~~-~~----~~l~sg~~d~~i~iw~~~~~-----~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~   88 (347)
                      ....|...|..+... +.    ..+.-.+.+ ...+|+....     .+....+|.+.|.+++|+|++    .+|++++ 
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fspdg----~~la~g~-   83 (393)
T 1erj_A           10 QRANHSKPIPPFLLDLDSQSVPDALKKQTND-YYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDG----EYLATGC-   83 (393)
T ss_dssp             SSSCTTCCCCHHHHCCCSSSSCTTSEEECSS-CEEEECTTSCCCEEEEEEEEEECSSCCCEEEECTTS----SEEEEEC-
T ss_pred             ccccccccCCCccccCChhHCcHhHhccCCc-eEEEECCCCCcccCceeEEecCCCCEEEEEEECCCC----CEEEEEc-
Confidence            345566666644322 11    112333333 3457875321     122233699999999999954    3688876 


Q ss_pred             CCcEEEEeccccccccCccc-------ccee--eeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccce
Q 036314           89 DQTLRLWKFDAEELVNHPKK-------IRSF--KILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVS  159 (347)
Q Consensus        89 Dg~v~~wd~~~~~~~~~~~~-------~~~~--~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~  159 (347)
                      |+++++|++.+++.......       ...+  .....+...|.+++|+|+|++|++|+.|++|++||+.+.        
T Consensus        84 ~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~--------  155 (393)
T 1erj_A           84 NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENR--------  155 (393)
T ss_dssp             BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTT--------
T ss_pred             CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEEcCCCeEEEEECCCC--------
Confidence            68999999987653211000       0000  001123345999999999999999999999999998753        


Q ss_pred             eeeccCCCccccccccccccccccCCccceEEEEe-CCCCeEEEEecCCcEEEEECCCCceeeeeeeCeeeEEEEeeCCC
Q 036314          160 IKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEG  238 (347)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  238 (347)
                                       +.+..+.+|...|.++.| |+++.|++++.|++|++||+++++....+.....+.++++++.+
T Consensus       156 -----------------~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~  218 (393)
T 1erj_A          156 -----------------KIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGD  218 (393)
T ss_dssp             -----------------EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTT
T ss_pred             -----------------cEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcCCCcEEEEEECCC
Confidence                             335567889999999998 57889999999999999999999887777666778899998867


Q ss_pred             CcEEEEecCCCcEEEEeCCCCCCCCCeEEe-------cCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCC------
Q 036314          239 SALIAAGGSDPILRIWDPRKPGTSAPVFQF-------SSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTA------  305 (347)
Q Consensus       239 ~~~la~~~~d~~i~iwd~~~~~~~~~~~~~-------~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~------  305 (347)
                      +.++++|+.|+.|++||++...   ....+       .+|...|.+++|+|++. +|++|+.|++|++||+++.      
T Consensus       219 ~~~l~~~s~d~~v~iwd~~~~~---~~~~~~~~~~~~~~h~~~v~~v~~~~~g~-~l~s~s~d~~v~~wd~~~~~~~~~~  294 (393)
T 1erj_A          219 GKYIAAGSLDRAVRVWDSETGF---LVERLDSENESGTGHKDSVYSVVFTRDGQ-SVVSGSLDRSVKLWNLQNANNKSDS  294 (393)
T ss_dssp             CCEEEEEETTSCEEEEETTTCC---EEEEEC------CCCSSCEEEEEECTTSS-EEEEEETTSEEEEEEC---------
T ss_pred             CCEEEEEcCCCcEEEEECCCCc---EEEeecccccCCCCCCCCEEEEEECCCCC-EEEEEeCCCEEEEEECCCCCCcccc
Confidence            7899999999999999987532   22333       57999999999999986 5999999999999999763      


Q ss_pred             ------ccceeecCCCCeEEEEeecC-CCEEEEccCCceEEEeecc
Q 036314          306 ------WPLSVIDSHKDKVLCADWWR-GDSVISGGVDSKLCVSSGV  344 (347)
Q Consensus       306 ------~~~~~~~~h~~~v~~~~~~~-~~~l~s~s~D~~v~vw~~~  344 (347)
                            .....+.+|.+.|.+++|++ +.+|++|+.|++|++|+..
T Consensus       295 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~  340 (393)
T 1erj_A          295 KTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKK  340 (393)
T ss_dssp             ------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETT
T ss_pred             cCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECC
Confidence                  23456789999999999975 7789999999999999854

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=7e-36  Score=295.73  Aligned_cols=283  Identities=22%  Similarity=0.305  Sum_probs=237.9

Q ss_pred             CCCcCCceeeccCCC-CCEEEEEecCCeEEEEcC-CCeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEec
Q 036314           20 PSLHDDWVSAVDGSN-PGFILTGCYDNLGRVWKA-GGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKF   97 (347)
Q Consensus        20 ~~~h~~~v~~~~~~~-~~~l~sg~~d~~i~iw~~-~~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~   97 (347)
                      ..+|.+.|+++++++ +.+||+|+.||+|++||. .+.....+.+|.+.|.+++|+|++    ..|++++.||+|++||+
T Consensus         9 ~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~----~~l~~~~~dg~i~vw~~   84 (814)
T 3mkq_A            9 FSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARK----NWIIVGSDDFRIRVFNY   84 (814)
T ss_dssp             EEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGG----TEEEEEETTSEEEEEET
T ss_pred             eecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCC----CEEEEEeCCCeEEEEEC
Confidence            458999999999984 669999999999999996 577888999999999999999954    37999999999999999


Q ss_pred             cccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCcccccccccc
Q 036314           98 DAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGE  177 (347)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (347)
                      .+++         ....+.+|...|.+++|+|++++|++++.|++|++||+.+..                        .
T Consensus        85 ~~~~---------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~------------------------~  131 (814)
T 3mkq_A           85 NTGE---------KVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW------------------------A  131 (814)
T ss_dssp             TTCC---------EEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTS------------------------E
T ss_pred             CCCc---------EEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCc------------------------e
Confidence            8664         455678999999999999999999999999999999986421                        2


Q ss_pred             ccccccCCccceEEEEeC--CCCeEEEEecCCcEEEEECCCCceeeeeeeC--eeeEEEEeeC-CCCcEEEEecCCCcEE
Q 036314          178 AISTLVGHTQCVSSVVWP--QQETIYSASWDHSVRTWDVEMGKDLSDIFCG--KALNCIDIGG-EGSALIAAGGSDPILR  252 (347)
Q Consensus       178 ~~~~~~~h~~~v~~~~~~--~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~la~~~~d~~i~  252 (347)
                      ....+.+|...|.++.|.  ++..|++++.||+|++||++.+.....+...  ..+.++++.+ +++..+++++.|+.|+
T Consensus       132 ~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~  211 (814)
T 3mkq_A          132 LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIK  211 (814)
T ss_dssp             EEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEE
T ss_pred             EEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEE
Confidence            344667899999999984  5678999999999999999887766655533  5678888876 2556889999999999


Q ss_pred             EEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecCCCCeEEEEeecCC-CE-EE
Q 036314          253 IWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKVLCADWWRG-DS-VI  330 (347)
Q Consensus       253 iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~-~~-l~  330 (347)
                      +||++..   .....+.+|...|.+++|+|++. +|++++.||.|++||+++++.+..+..|.+.+++++|+|. .. ++
T Consensus       212 ~~d~~~~---~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  287 (814)
T 3mkq_A          212 IWDYQTK---SCVATLEGHMSNVSFAVFHPTLP-IIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYI  287 (814)
T ss_dssp             EEETTTT---EEEEEEECCSSCEEEEEECSSSS-EEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEE
T ss_pred             EEECCCC---cEEEEEcCCCCCEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEE
Confidence            9998753   34677889999999999999986 6999999999999999999989999999999999999864 42 34


Q ss_pred             EccCCceEEEeec
Q 036314          331 SGGVDSKLCVSSG  343 (347)
Q Consensus       331 s~s~D~~v~vw~~  343 (347)
                      +++.|+.+.+|+.
T Consensus       288 ~~~~~~~~~~~~~  300 (814)
T 3mkq_A          288 ASGFDNGFTVLSL  300 (814)
T ss_dssp             EEEETTEEEEEEC
T ss_pred             EEEeCCCEEEEEc
Confidence            4455666777763

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=2e-35  Score=274.28  Aligned_cols=284  Identities=26%  Similarity=0.456  Sum_probs=229.5

Q ss_pred             CCCcCCceeeccCCCCCEEEEEecCCeEEEEcCC-CeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEecc
Q 036314           20 PSLHDDWVSAVDGSNPGFILTGCYDNLGRVWKAG-GVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFD   98 (347)
Q Consensus        20 ~~~h~~~v~~~~~~~~~~l~sg~~d~~i~iw~~~-~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~   98 (347)
                      ..+|.+.|++++++++++|++|+.|++|++||.. +.+...+.+|.+.|.+++|.+..  +...|++++.|++|++||+.
T Consensus       158 ~~~h~~~V~~l~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~--~~~~l~s~s~d~~i~vwd~~  235 (464)
T 3v7d_B          158 LSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYK--NIKYIVTGSRDNTLHVWKLP  235 (464)
T ss_dssp             ECCCSSCEEEEEECSTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESS--SCEEEEEEETTSCEEEEECC
T ss_pred             EeCCCcCEEEEEEcCCCEEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCC--CCCEEEEEcCCCcEEEeeCC
Confidence            4489999999999877799999999999999974 77888999999999999998643  33579999999999999998


Q ss_pred             ccccccCc--------------cccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeecc
Q 036314           99 AEELVNHP--------------KKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRK  164 (347)
Q Consensus        99 ~~~~~~~~--------------~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~  164 (347)
                      ..+.....              ........+.+|...|.++  +++++++++|+.|++|++||+.+.             
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~-------------  300 (464)
T 3v7d_B          236 KESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQM-------------  300 (464)
T ss_dssp             CCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTT-------------
T ss_pred             CCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCC-------------
Confidence            66432110              0111355678999999887  577899999999999999998753             


Q ss_pred             CCCccccccccccccccccCCccceEEEEe-CCCCeEEEEecCCcEEEEECCCCceeeeeee-CeeeEEEEeeCCCCcEE
Q 036314          165 GNNQVEEPQLEGEAISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFC-GKALNCIDIGGEGSALI  242 (347)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l  242 (347)
                                  +.+..+.+|...|.++.| ++++.+++++.|++|++||+++++.+..+.. ...+.++.++   +..+
T Consensus       301 ------------~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~---~~~l  365 (464)
T 3v7d_B          301 ------------KCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS---DKFL  365 (464)
T ss_dssp             ------------EEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC---SSEE
T ss_pred             ------------cEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc---CCEE
Confidence                        345567789999999998 6788999999999999999999988877754 3467888885   3588


Q ss_pred             EEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCcccee-ecCCCCeEEEE
Q 036314          243 AAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSV-IDSHKDKVLCA  321 (347)
Q Consensus       243 a~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~-~~~h~~~v~~~  321 (347)
                      ++++.|+.|++||++...   ..... .|...+..+.|+|++. +|++++ |+.|++||+++++.+.. +..|.+.|+++
T Consensus       366 ~s~s~dg~v~vwd~~~~~---~~~~~-~~~~~~~~~~~~~~~~-~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v  439 (464)
T 3v7d_B          366 VSAAADGSIRGWDANDYS---RKFSY-HHTNLSAITTFYVSDN-ILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSV  439 (464)
T ss_dssp             EEEETTSEEEEEETTTCC---EEEEE-ECTTCCCEEEEEECSS-EEEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEE
T ss_pred             EEEeCCCcEEEEECCCCc---eeeee-cCCCCccEEEEEeCCC-EEEEec-CCeEEEEECCCCcEEehhhccCCCcEEEE
Confidence            999999999999997532   23333 3666778889999885 588888 89999999999988875 67899999999


Q ss_pred             eecCCCEEEEccCCceEEEe
Q 036314          322 DWWRGDSVISGGVDSKLCVS  341 (347)
Q Consensus       322 ~~~~~~~l~s~s~D~~v~vw  341 (347)
                      +|+++..+++++.|+.+.+|
T Consensus       440 ~~~~~~l~~~~~~~g~~~i~  459 (464)
T 3v7d_B          440 NFKGKTLVAAVEKDGQSFLE  459 (464)
T ss_dssp             EEETTEEEEEEEETTEEEEE
T ss_pred             EecCCEEEEEEEeCCeEEEE
Confidence            99855566777778777665

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=4.7e-36  Score=309.77  Aligned_cols=281  Identities=22%  Similarity=0.281  Sum_probs=237.0

Q ss_pred             CCCcCCceeeccCC-CCCEEEEEecCCeEEEEcCC-CeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEec
Q 036314           20 PSLHDDWVSAVDGS-NPGFILTGCYDNLGRVWKAG-GVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKF   97 (347)
Q Consensus        20 ~~~h~~~v~~~~~~-~~~~l~sg~~d~~i~iw~~~-~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~   97 (347)
                      ..+|.+.|++++++ ++.+||+|+.||+|++||.. +.++..+.+|.+.|.+++|+|++    ..|++++.|++|++||+
T Consensus       611 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~----~~l~s~~~d~~v~vwd~  686 (1249)
T 3sfz_A          611 VRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDD----SYIATCSADKKVKIWDS  686 (1249)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTS----SEEEEEETTSEEEEEET
T ss_pred             EecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCC----CEEEEEeCCCeEEEEEC
Confidence            34899999999998 56799999999999999974 67888999999999999999954    37999999999999999


Q ss_pred             cccccccCccccceeeeeeccccceEEEEEeC--CCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCcccccccc
Q 036314           98 DAEELVNHPKKIRSFKILRGHKASVHSIAAET--SGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLE  175 (347)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~--~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (347)
                      .+++         .+..+.+|..+|.+++|++  ++.++++|+.|++|++||+.++                        
T Consensus       687 ~~~~---------~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~------------------------  733 (1249)
T 3sfz_A          687 ATGK---------LVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQK------------------------  733 (1249)
T ss_dssp             TTCC---------EEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSS------------------------
T ss_pred             CCCc---------eEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCc------------------------
Confidence            8764         4567889999999999999  4568999999999999998753                        


Q ss_pred             ccccccccCCccceEEEEe-CCCCeEEEEecCCcEEEEECCCCceeeeeeeC--------------eeeEEEEeeCCCCc
Q 036314          176 GEAISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFCG--------------KALNCIDIGGEGSA  240 (347)
Q Consensus       176 ~~~~~~~~~h~~~v~~~~~-~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~  240 (347)
                       .+...+.+|...|.++.| |+++.+++++.||+|++||++++.....+...              ..+.++++++++ .
T Consensus       734 -~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg-~  811 (1249)
T 3sfz_A          734 -ECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADG-D  811 (1249)
T ss_dssp             -SEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTS-S
T ss_pred             -chhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCC-C
Confidence             335567789999999998 57789999999999999999988766554321              145677887655 4


Q ss_pred             EEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecCCCCeEEE
Q 036314          241 LIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKVLC  320 (347)
Q Consensus       241 ~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h~~~v~~  320 (347)
                      .+++++ ++.+.+||+.....  ......+|...|.+++|+|++. ++++++.|+.|++||++++..+..+.+|.+.|.+
T Consensus       812 ~l~~~~-~~~v~~~d~~~~~~--~~~~~~~~~~~v~~~~~sp~~~-~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~  887 (1249)
T 3sfz_A          812 KIIVAA-KNKVLLFDIHTSGL--LAEIHTGHHSTIQYCDFSPYDH-LAVIALSQYCVELWNIDSRLKVADCRGHLSWVHG  887 (1249)
T ss_dssp             EEEEEE-TTEEEEEETTTCCE--EEEEECSSSSCCCEEEECSSTT-EEEEECSSSCEEEEETTTTEEEEEECCCSSCEEE
T ss_pred             EEEEEc-CCcEEEEEecCCCc--eeEEcCCCCCceEEEEEcCCCC-EEEEEeCCCeEEEEEcCCCceeeecCCCccceEE
Confidence            556555 78999999875322  2223348999999999999986 5999999999999999999989999999999999


Q ss_pred             EeecC-CCEEEEccCCceEEEeec
Q 036314          321 ADWWR-GDSVISGGVDSKLCVSSG  343 (347)
Q Consensus       321 ~~~~~-~~~l~s~s~D~~v~vw~~  343 (347)
                      ++|+| |++|++++.|++|++|+.
T Consensus       888 v~~spdg~~l~s~s~dg~v~vw~~  911 (1249)
T 3sfz_A          888 VMFSPDGSSFLTASDDQTIRVWET  911 (1249)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEEH
T ss_pred             EEECCCCCEEEEEeCCCeEEEEEc
Confidence            99985 678999999999999985

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=5.8e-36  Score=268.32  Aligned_cols=282  Identities=20%  Similarity=0.262  Sum_probs=220.1

Q ss_pred             CCCCcCCceeeccCCCC----CEEEEEecCCeEEEEcCC--CeEE-EEeeccCCceEEEEEeecCCCceEEEEEccCCCc
Q 036314           19 EPSLHDDWVSAVDGSNP----GFILTGCYDNLGRVWKAG--GVCT-HILEGHCGAVSSVNIIKSDGLKYVTVATASKDQT   91 (347)
Q Consensus        19 ~~~~h~~~v~~~~~~~~----~~l~sg~~d~~i~iw~~~--~~~~-~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~   91 (347)
                      ...+|.+.|++++++++    .+|++|+.||+|++||..  +... ..+.+|.+.|.+++|+|++    ..|++++.||+
T Consensus        34 ~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~----~~l~s~~~dg~  109 (368)
T 3mmy_A           34 VTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDG----SKVFTASCDKT  109 (368)
T ss_dssp             CSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTS----SEEEEEETTSE
T ss_pred             eccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCC----CEEEEEcCCCc
Confidence            46789999999999853    799999999999999975  4444 7899999999999999844    37999999999


Q ss_pred             EEEEeccccccccCccccceeeeeeccccceEEEEE--eCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCcc
Q 036314           92 LRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAA--ETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQV  169 (347)
Q Consensus        92 v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~--s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~  169 (347)
                      |++||+.+++.          ..+.+|..+|.+++|  ++++++|++++.|++|++||+.+..                 
T Consensus       110 v~iwd~~~~~~----------~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-----------------  162 (368)
T 3mmy_A          110 AKMWDLSSNQA----------IQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSN-----------------  162 (368)
T ss_dssp             EEEEETTTTEE----------EEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSS-----------------
T ss_pred             EEEEEcCCCCc----------eeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCc-----------------
Confidence            99999987542          235679999999999  8999999999999999999987542                 


Q ss_pred             ccccccccccccccCCccceEEEEeCCCCeEEEEecCCcEEEEECCCCceeeeee---eCeeeEEEEeeCCC---CcEEE
Q 036314          170 EEPQLEGEAISTLVGHTQCVSSVVWPQQETIYSASWDHSVRTWDVEMGKDLSDIF---CGKALNCIDIGGEG---SALIA  243 (347)
Q Consensus       170 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~---~~~~~~~~~~~~~~---~~~la  243 (347)
                              .+..+..|. .+.++.+. ...+++++.++.+++||++.........   ......++.+....   ...++
T Consensus       163 --------~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (368)
T 3mmy_A          163 --------PMMVLQLPE-RCYCADVI-YPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFA  232 (368)
T ss_dssp             --------CSEEEECSS-CEEEEEEE-TTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEE
T ss_pred             --------EEEEEecCC-CceEEEec-CCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEE
Confidence                    223333343 34444432 3578888999999999998764332221   12234444443222   22388


Q ss_pred             EecCCCcEEEEeCCCCCCCCCeEEecCCCC------------CeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceee
Q 036314          244 AGGSDPILRIWDPRKPGTSAPVFQFSSHNS------------WISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVI  311 (347)
Q Consensus       244 ~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~------------~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~  311 (347)
                      +++.|+.|++||++..........+.+|..            .|.+++|+|++. +|++++.||.|++||+++++.+..+
T Consensus       233 ~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~s~~~dg~i~iwd~~~~~~~~~~  311 (368)
T 3mmy_A          233 LGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHG-TLATVGSDGRFSFWDKDARTKLKTS  311 (368)
T ss_dssp             EEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTC-CEEEEETTSCEEEEETTTTEEEEEC
T ss_pred             EecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCC-EEEEEccCCeEEEEECCCCcEEEEe
Confidence            999999999999975432134567777776            799999999986 5999999999999999999999999


Q ss_pred             cCCCCeEEEEeecC-CCEEEEccCCceEEEee
Q 036314          312 DSHKDKVLCADWWR-GDSVISGGVDSKLCVSS  342 (347)
Q Consensus       312 ~~h~~~v~~~~~~~-~~~l~s~s~D~~v~vw~  342 (347)
                      .+|.+.|.+++|+| |++||++|.|+..+.|.
T Consensus       312 ~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~  343 (368)
T 3mmy_A          312 EQLDQPISACCFNHNGNIFAYASSYDWSKGHE  343 (368)
T ss_dssp             CCCSSCEEEEEECTTSSCEEEEECCCSTTCGG
T ss_pred             cCCCCCceEEEECCCCCeEEEEeccccccccc
Confidence            99999999999985 77899999887655544

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=1.1e-35  Score=261.82  Aligned_cols=247  Identities=27%  Similarity=0.451  Sum_probs=205.4

Q ss_pred             eEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEE
Q 036314           55 VCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMV  134 (347)
Q Consensus        55 ~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l  134 (347)
                      .....+.+|.+.|.+++|+|++    ..|++++.||+|++|++..++         ....+.+|..+|.+++|+|++++|
T Consensus        14 ~~~~~~~gh~~~v~~~~~s~~~----~~l~s~~~dg~i~iw~~~~~~---------~~~~~~~h~~~v~~~~~~~~~~~l   80 (312)
T 4ery_A           14 ALKFTLAGHTKAVSSVKFSPNG----EWLASSSADKLIKIWGAYDGK---------FEKTISGHKLGISDVAWSSDSNLL   80 (312)
T ss_dssp             EEEEEECCCSSCEEEEEECTTS----SEEEEEETTSCEEEEETTTCC---------EEEEECCCSSCEEEEEECTTSSEE
T ss_pred             eeEEEEcccCCcEEEEEECCCC----CEEEEeeCCCeEEEEeCCCcc---------cchhhccCCCceEEEEEcCCCCEE
Confidence            4556789999999999999854    379999999999999987653         345678999999999999999999


Q ss_pred             EEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEe-CCCCeEEEEecCCcEEEEE
Q 036314          135 CSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWD  213 (347)
Q Consensus       135 ~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~l~s~s~dg~v~vwd  213 (347)
                      ++++.|++|++||+.+.                         +.+..+.+|...|.++.| |+++.|++++.|++|++||
T Consensus        81 ~s~~~d~~i~vwd~~~~-------------------------~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd  135 (312)
T 4ery_A           81 VSASDDKTLKIWDVSSG-------------------------KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD  135 (312)
T ss_dssp             EEEETTSEEEEEETTTC-------------------------CEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEE
T ss_pred             EEECCCCEEEEEECCCC-------------------------cEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Confidence            99999999999998753                         235567789999999998 5778999999999999999


Q ss_pred             CCCCceeeeeee-CeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEe-cCCCCCeeEEEeCCCCCeEEEEE
Q 036314          214 VEMGKDLSDIFC-GKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQF-SSHNSWISACKWHNKSWFHLISA  291 (347)
Q Consensus       214 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~-~~h~~~v~~v~~s~~~~~~l~s~  291 (347)
                      +++++.+..+.. ..++.+++++++ +.++++++.|+.|++||++...   ....+ ..|...+..++|+|++. +|+++
T Consensus       136 ~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~wd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~l~~~  210 (312)
T 4ery_A          136 VKTGKCLKTLPAHSDPVSAVHFNRD-GSLIVSSSYDGLCRIWDTASGQ---CLKTLIDDDNPPVSFVKFSPNGK-YILAA  210 (312)
T ss_dssp             TTTCCEEEEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTCC---EEEEECCSSCCCEEEEEECTTSS-EEEEE
T ss_pred             CCCCEEEEEecCCCCcEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCc---eeeEEeccCCCceEEEEECCCCC-EEEEE
Confidence            999887777654 357889999764 5688999999999999997532   23333 45667899999999986 59999


Q ss_pred             eCCCcEEEEEcCCCccceeecCCCCeEEE--Eeec--CCCEEEEccCCceEEEeecc
Q 036314          292 SYDGKVMLWDLRTAWPLSVIDSHKDKVLC--ADWW--RGDSVISGGVDSKLCVSSGV  344 (347)
Q Consensus       292 s~D~~i~lwd~~~~~~~~~~~~h~~~v~~--~~~~--~~~~l~s~s~D~~v~vw~~~  344 (347)
                      +.|+.|++||+++++.+..+.+|...+.+  ..|+  ++.+|++|+.|++|++|+..
T Consensus       211 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~  267 (312)
T 4ery_A          211 TLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ  267 (312)
T ss_dssp             ETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETT
T ss_pred             cCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECC
Confidence            99999999999999888889888765433  2343  46789999999999999864

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=1.4e-35  Score=263.37  Aligned_cols=261  Identities=20%  Similarity=0.242  Sum_probs=209.0

Q ss_pred             EEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeC--CCCEEE
Q 036314           58 HILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAET--SGNMVC  135 (347)
Q Consensus        58 ~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~--~~~~l~  135 (347)
                      ..+.+|.+.|.+++|+|++    ..|++++.||+|++||+..++.     ..+....+.+|..+|.+++|+|  ++++|+
T Consensus         5 ~~~~gH~~~v~~~~~~~~~----~~l~~~~~dg~i~iw~~~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~   75 (351)
T 3f3f_A            5 PFDSGHDDLVHDVVYDFYG----RHVATCSSDQHIKVFKLDKDTS-----NWELSDSWRAHDSSIVAIDWASPEYGRIIA   75 (351)
T ss_dssp             CEECCCSSCEEEEEECSSS----SEEEEEETTSEEEEEEECSSSC-----CEEEEEEEECCSSCEEEEEECCGGGCSEEE
T ss_pred             ccCcccccceeEEEEcCCC----CEEEEeeCCCeEEEEECCCCCC-----cceecceeccCCCcEEEEEEcCCCCCCEEE
Confidence            4578999999999999954    3799999999999999976431     2235567789999999999999  699999


Q ss_pred             EeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEeC-C--CCeEEEEecCCcEEEE
Q 036314          136 SGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWP-Q--QETIYSASWDHSVRTW  212 (347)
Q Consensus       136 sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~--~~~l~s~s~dg~v~vw  212 (347)
                      +++.|++|++||+.........                .....+..+.+|...|.++.|. +  +..|++++.|+.|++|
T Consensus        76 s~~~dg~v~vwd~~~~~~~~~~----------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw  139 (351)
T 3f3f_A           76 SASYDKTVKLWEEDPDQEECSG----------------RRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLY  139 (351)
T ss_dssp             EEETTSCEEEEEECTTSCTTSS----------------CSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEE
T ss_pred             EEcCCCeEEEEecCCCcccccc----------------cCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEe
Confidence            9999999999998764321100                0012345677899999999984 5  7789999999999999


Q ss_pred             ECCCCceeeeee--------------eCeeeEEEEeeCC--CCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCee
Q 036314          213 DVEMGKDLSDIF--------------CGKALNCIDIGGE--GSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWIS  276 (347)
Q Consensus       213 d~~~~~~~~~~~--------------~~~~~~~~~~~~~--~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~  276 (347)
                      |+++++.+..+.              ....+.+++++|.  ++..+++++.|+.+.+|+.... .......+.+|...|.
T Consensus       140 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~h~~~i~  218 (351)
T 3f3f_A          140 DALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDG-KLHVAAKLPGHKSLIR  218 (351)
T ss_dssp             ECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTS-CEEEEEECCCCCSCEE
T ss_pred             cCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCC-ceeeeeecCCCCccee
Confidence            998877554432              1235778888775  4668899999999988876542 2334677889999999


Q ss_pred             EEEeCCCCC---eEEEEEeCCCcEEEEEcCCC----------------------------------------------cc
Q 036314          277 ACKWHNKSW---FHLISASYDGKVMLWDLRTA----------------------------------------------WP  307 (347)
Q Consensus       277 ~v~~s~~~~---~~l~s~s~D~~i~lwd~~~~----------------------------------------------~~  307 (347)
                      +++|+|++.   .+|++++.|+.|++||++.+                                              +.
T Consensus       219 ~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (351)
T 3f3f_A          219 SISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVEL  298 (351)
T ss_dssp             EEEECCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEE
T ss_pred             EEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccE
Confidence            999999973   57999999999999999875                                              45


Q ss_pred             ceeecCCCCeEEEEeecC-CCEEEEccCCceEEEeecc
Q 036314          308 LSVIDSHKDKVLCADWWR-GDSVISGGVDSKLCVSSGV  344 (347)
Q Consensus       308 ~~~~~~h~~~v~~~~~~~-~~~l~s~s~D~~v~vw~~~  344 (347)
                      +..+.+|.+.|.+++|+| +++|++++.|++|+||+..
T Consensus       299 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~  336 (351)
T 3f3f_A          299 LSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKAT  336 (351)
T ss_dssp             EEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred             EEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecC
Confidence            666789999999999985 6789999999999999865

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=7.9e-35  Score=258.65  Aligned_cols=252  Identities=22%  Similarity=0.359  Sum_probs=202.1

Q ss_pred             EEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEEE
Q 036314           56 CTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVC  135 (347)
Q Consensus        56 ~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~  135 (347)
                      +..+|.||.+.|++|+|+|+.+   .+|+|||.|++|++||+...+.    ....+...+.+|..+|.+++|+|++++|+
T Consensus        30 l~~tL~GH~~~V~~v~~sp~~~---~~l~S~s~D~~i~vWd~~~~~~----~~~~~~~~l~~h~~~V~~~~~s~dg~~l~  102 (340)
T 4aow_A           30 LRGTLKGHNGWVTQIATTPQFP---DMILSASRDKTIIMWKLTRDET----NYGIPQRALRGHSHFVSDVVISSDGQFAL  102 (340)
T ss_dssp             EEEEECCCSSCEEEEEECTTCT---TEEEEEETTSCEEEEEECCSSS----CSEEEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred             EEEEECCccCCEEEEEEeCCCC---CEEEEEcCCCeEEEEECCCCCc----ccceeeEEEeCCCCCEEEEEECCCCCEEE
Confidence            4567999999999999998644   3799999999999999976532    12235567889999999999999999999


Q ss_pred             EeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEe-CCCCeEEEEecCCcEEEEEC
Q 036314          136 SGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDV  214 (347)
Q Consensus       136 sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~l~s~s~dg~v~vwd~  214 (347)
                      +++.|+.|++|+.....                         .......+...+....+ +.+..|++++.|+.+++||+
T Consensus       103 s~~~d~~i~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~  157 (340)
T 4aow_A          103 SGSWDGTLRLWDLTTGT-------------------------TTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNT  157 (340)
T ss_dssp             EEETTSEEEEEETTTTE-------------------------EEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECT
T ss_pred             EEcccccceEEeecccc-------------------------eeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEe
Confidence            99999999999976531                         12223344455566665 56788999999999999998


Q ss_pred             CCCceeeeee--eCeeeEEEEeeCCC-CcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEE
Q 036314          215 EMGKDLSDIF--CGKALNCIDIGGEG-SALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISA  291 (347)
Q Consensus       215 ~~~~~~~~~~--~~~~~~~~~~~~~~-~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~  291 (347)
                      ..........  ....+.++.+.++. ..++++++.|+.|++||++..   .....+.+|.+.|.+++|+|++. +|++|
T Consensus       158 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~---~~~~~~~~h~~~v~~~~~s~~~~-~l~s~  233 (340)
T 4aow_A          158 LGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANC---KLKTNHIGHTGYLNTVTVSPDGS-LCASG  233 (340)
T ss_dssp             TSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTT---EEEEEECCCSSCEEEEEECTTSS-EEEEE
T ss_pred             CCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCC---ceeeEecCCCCcEEEEEECCCCC-EEEEE
Confidence            7654433222  23467778876543 346788999999999999753   34678889999999999999986 69999


Q ss_pred             eCCCcEEEEEcCCCccceeecCCCCeEEEEeecCCCEEEEccCCceEEEeecc
Q 036314          292 SYDGKVMLWDLRTAWPLSVIDSHKDKVLCADWWRGDSVISGGVDSKLCVSSGV  344 (347)
Q Consensus       292 s~D~~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~D~~v~vw~~~  344 (347)
                      +.|++|++||+++.+++..+..| ..|.++.|+|+.++++++.|++|+||+..
T Consensus       234 s~Dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~d~~i~iwd~~  285 (340)
T 4aow_A          234 GKDGQAMLWDLNEGKHLYTLDGG-DIINALCFSPNRYWLCAATGPSIKIWDLE  285 (340)
T ss_dssp             ETTCEEEEEETTTTEEEEEEECS-SCEEEEEECSSSSEEEEEETTEEEEEETT
T ss_pred             eCCCeEEEEEeccCceeeeecCC-ceEEeeecCCCCceeeccCCCEEEEEECC
Confidence            99999999999998888887754 68999999988888888999999999854

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.7e-35  Score=293.72  Aligned_cols=305  Identities=13%  Similarity=0.094  Sum_probs=218.7

Q ss_pred             cCCceeeccCC-CCCEEEEEecCCeEEEEcCCC-eEE-----------EEeeccCCceEEEEEeecCCCceEEEEEccCC
Q 036314           23 HDDWVSAVDGS-NPGFILTGCYDNLGRVWKAGG-VCT-----------HILEGHCGAVSSVNIIKSDGLKYVTVATASKD   89 (347)
Q Consensus        23 h~~~v~~~~~~-~~~~l~sg~~d~~i~iw~~~~-~~~-----------~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~D   89 (347)
                      |...|++++|+ ++.+|++|+.||+|++||..+ .+.           ..+.+|.+.|.+++|+|.+   ...|++|+.|
T Consensus        97 ~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~---~~~l~~g~~d  173 (902)
T 2oaj_A           97 VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRD---IGTVLISYEY  173 (902)
T ss_dssp             CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTE---EEEEEEECSS
T ss_pred             CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCC---CCEEEEEeCC
Confidence            67789999998 567999999999999999864 332           2346799999999999843   3478999999


Q ss_pred             CcEEEEeccccccccCccccceeeeee------------------ccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCC
Q 036314           90 QTLRLWKFDAEELVNHPKKIRSFKILR------------------GHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDS  151 (347)
Q Consensus        90 g~v~~wd~~~~~~~~~~~~~~~~~~~~------------------~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~  151 (347)
                      |+| +||+..++..         ..+.                  +|...|.+++|+|+|++|++|+.|++|++||+.++
T Consensus       174 g~v-lWd~~~~~~~---------~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g  243 (902)
T 2oaj_A          174 VTL-TYSLVENEIK---------QSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSG  243 (902)
T ss_dssp             CEE-EEETTTTEEE---------EEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTC
T ss_pred             CcE-EEECCCCceE---------EEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC
Confidence            999 9999876432         2233                  35688999999999999999999999999998754


Q ss_pred             CCCC-----------------------c-cc---eee--------e----c-cC------CC-ccc--------------
Q 036314          152 DAAG-----------------------N-QV---SIK--------K----R-KG------NN-QVE--------------  170 (347)
Q Consensus       152 ~~~~-----------------------~-~~---~~~--------~----~-~~------~~-~~~--------------  170 (347)
                      ....                       . .+   ...        .    . ..      .. ...              
T Consensus       244 ~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~  323 (902)
T 2oaj_A          244 HMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEG  323 (902)
T ss_dssp             CEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHH
T ss_pred             cEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhh
Confidence            3210                       0 00   000        0    0 00      00 000              


Q ss_pred             -------------------------------ccc----c--------------------ccccc-------ccccCCccc
Q 036314          171 -------------------------------EPQ----L--------------------EGEAI-------STLVGHTQC  188 (347)
Q Consensus       171 -------------------------------~~~----~--------------------~~~~~-------~~~~~h~~~  188 (347)
                                                     .+.    .                    .+...       ..+..|...
T Consensus       324 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~  403 (902)
T 2oaj_A          324 MKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPL  403 (902)
T ss_dssp             HHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTB
T ss_pred             hhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCC
Confidence                                           000    0                    00000       011222233


Q ss_pred             eEEEE----------------------------------e-CCCCeEEEEecCCcEEEEECCCCcee--eee--------
Q 036314          189 VSSVV----------------------------------W-PQQETIYSASWDHSVRTWDVEMGKDL--SDI--------  223 (347)
Q Consensus       189 v~~~~----------------------------------~-~~~~~l~s~s~dg~v~vwd~~~~~~~--~~~--------  223 (347)
                      |.+++                                  | |+++.|++++.|++|++||+.++...  ..+        
T Consensus       404 v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~  483 (902)
T 2oaj_A          404 ATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTL  483 (902)
T ss_dssp             EEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHT
T ss_pred             eeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhc
Confidence            44333                                  2 45678999999999999999887421  111        


Q ss_pred             --eeCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCC----------------------------------------
Q 036314          224 --FCGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGT----------------------------------------  261 (347)
Q Consensus       224 --~~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~----------------------------------------  261 (347)
                        .+...+.+++|+|+ +.+||+|+.|++|+|||+.....                                        
T Consensus       484 ~~~h~~~V~svafspd-g~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  562 (902)
T 2oaj_A          484 NKAKELAVDKISFAAE-TLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVR  562 (902)
T ss_dssp             TCSSSCCEEEEEEETT-TTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCS
T ss_pred             CCCCCCceeEEEecCC-CCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCC
Confidence              12346899999875 45889999999999999864310                                        


Q ss_pred             --CCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccce-----eec-CCCCeEEEEeec-----CC--
Q 036314          262 --SAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLS-----VID-SHKDKVLCADWW-----RG--  326 (347)
Q Consensus       262 --~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~-----~~~-~h~~~v~~~~~~-----~~--  326 (347)
                        ..++..+.+|.+.|.+++|+|+|  +||+|+.|++|+|||++++..+.     .+. +|.+.|++++|+     ++  
T Consensus       563 ~g~~~~~~l~~h~~~V~svafSpdG--~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~  640 (902)
T 2oaj_A          563 QGFMPSTAVHANKGKTSAINNSNIG--FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGY  640 (902)
T ss_dssp             EEEEEEEEECCCSCSEEEEEECBTS--EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSS
T ss_pred             CccceeEEEEcCCCcEEEEEecCCc--EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCC
Confidence              01256788999999999999998  69999999999999998765432     344 899999999999     64  


Q ss_pred             --CEEEEccCCceEEEeec
Q 036314          327 --DSVISGGVDSKLCVSSG  343 (347)
Q Consensus       327 --~~l~s~s~D~~v~vw~~  343 (347)
                        .+|++|+.|++|++|+.
T Consensus       641 ~~~~l~sgs~D~tv~~wd~  659 (902)
T 2oaj_A          641 SSILMVCGTDMGEVITYKI  659 (902)
T ss_dssp             EEEEEEEEETTSEEEEEEE
T ss_pred             cceEEEEEecCCcEEEEEE
Confidence              57999999999999985

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.7e-35  Score=265.26  Aligned_cols=256  Identities=20%  Similarity=0.332  Sum_probs=204.6

Q ss_pred             eEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCC--CC
Q 036314           55 VCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETS--GN  132 (347)
Q Consensus        55 ~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~--~~  132 (347)
                      .++..+.+|.+.|.+++|+|++    ..|++++.||+|++|++...+       .+....+.+|..+|.+++|+++  ++
T Consensus         2 ~~~~~~~~h~~~v~~~~~s~~~----~~l~~~~~dg~i~iw~~~~~~-------~~~~~~~~~h~~~v~~~~~~~~~~~~   70 (379)
T 3jrp_A            2 SMVVIANAHNELIHDAVLDYYG----KRLATCSSDKTIKIFEVEGET-------HKLIDTLTGHEGPVWRVDWAHPKFGT   70 (379)
T ss_dssp             ---CCEEECCCCEEEEEECSSS----SEEEEEETTSCEEEEEEETTE-------EEEEEEECCCSSCEEEEEECCGGGCS
T ss_pred             CccEEecCCcccEEEEEEcCCC----CEEEEEECCCcEEEEecCCCc-------ceeeeEecCCCCcEEEEEeCCCCCCC
Confidence            4567889999999999999854    379999999999999987332       2355678899999999999877  89


Q ss_pred             EEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEeC-C--CCeEEEEecCCcE
Q 036314          133 MVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWP-Q--QETIYSASWDHSV  209 (347)
Q Consensus       133 ~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~--~~~l~s~s~dg~v  209 (347)
                      +|++++.|++|++||+.+..                       ...+..+.+|...|.++.|. +  +..|++++.|+.|
T Consensus        71 ~l~s~~~dg~v~iwd~~~~~-----------------------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i  127 (379)
T 3jrp_A           71 ILASCSYDGKVLIWKEENGR-----------------------WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKV  127 (379)
T ss_dssp             EEEEEETTSCEEEEEEETTE-----------------------EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEE
T ss_pred             EEEEeccCCEEEEEEcCCCc-----------------------eeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcE
Confidence            99999999999999987531                       01345667788999999984 5  6789999999999


Q ss_pred             EEEECCCCceeeee--e-eCeeeEEEEeeCC------------CCcEEEEecCCCcEEEEeCCCCCCC-CCeEEecCCCC
Q 036314          210 RTWDVEMGKDLSDI--F-CGKALNCIDIGGE------------GSALIAAGGSDPILRIWDPRKPGTS-APVFQFSSHNS  273 (347)
Q Consensus       210 ~vwd~~~~~~~~~~--~-~~~~~~~~~~~~~------------~~~~la~~~~d~~i~iwd~~~~~~~-~~~~~~~~h~~  273 (347)
                      ++||++.+......  . +...+.++++.+.            ++.++++++.|+.|++||++..... .....+.+|..
T Consensus       128 ~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~  207 (379)
T 3jrp_A          128 SVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSD  207 (379)
T ss_dssp             EEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSS
T ss_pred             EEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccC
Confidence            99999887433322  2 3457889999874            5678999999999999998753321 23457789999


Q ss_pred             CeeEEEeCCCC--CeEEEEEeCCCcEEEEEcCCCcc-----ceeecCCCCeEEEEeecC-CCEEEEccCCceEEEeecc
Q 036314          274 WISACKWHNKS--WFHLISASYDGKVMLWDLRTAWP-----LSVIDSHKDKVLCADWWR-GDSVISGGVDSKLCVSSGV  344 (347)
Q Consensus       274 ~v~~v~~s~~~--~~~l~s~s~D~~i~lwd~~~~~~-----~~~~~~h~~~v~~~~~~~-~~~l~s~s~D~~v~vw~~~  344 (347)
                      .|.+++|+|++  ..+|++++.|+.|++||++++..     +.....|...|++++|+| +++|++++.||.|+||+..
T Consensus       208 ~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~  286 (379)
T 3jrp_A          208 WVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN  286 (379)
T ss_dssp             CEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEE
T ss_pred             cEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCC
Confidence            99999999994  46799999999999999998642     222345889999999985 7789999999999999854

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=1.9e-34  Score=276.26  Aligned_cols=287  Identities=14%  Similarity=0.169  Sum_probs=237.3

Q ss_pred             CCCcCCceeeccCCC-CCEEEEEecCCeEEEEcCC-C----eEEEEeeccCCc-eEEEEEee--cCCCceEEEEEccCCC
Q 036314           20 PSLHDDWVSAVDGSN-PGFILTGCYDNLGRVWKAG-G----VCTHILEGHCGA-VSSVNIIK--SDGLKYVTVATASKDQ   90 (347)
Q Consensus        20 ~~~h~~~v~~~~~~~-~~~l~sg~~d~~i~iw~~~-~----~~~~~l~~h~~~-V~~v~~~~--~~~~~~~~l~s~s~Dg   90 (347)
                      +..|.+.|+++++++ +++||+++ |+.|++|+.. +    .....+.+|.+. |.+++|+|  ++.    .|++++.||
T Consensus        14 ~~~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~----~l~s~~~dg   88 (615)
T 1pgu_A           14 PSTQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQ----YLCSGDESG   88 (615)
T ss_dssp             CCCCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCC----EEEEEETTS
T ss_pred             CCCccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCC----EEEEecCCC
Confidence            457899999999984 56899888 8999999975 5    578889999999 99999998  654    699999999


Q ss_pred             cEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCC----CcEEEEecCCCCCCCccceeeeccCC
Q 036314           91 TLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWD----CTISLWRTNDSDAAGNQVSIKKRKGN  166 (347)
Q Consensus        91 ~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~D----g~I~iwd~~~~~~~~~~~~~~~~~~~  166 (347)
                      +|++||+.+++... ....+....+.+|..+|.+++|+|+++++++++.|    +.|++||..                 
T Consensus        89 ~v~vw~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~-----------------  150 (615)
T 1pgu_A           89 KVIVWGWTFDKESN-SVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSG-----------------  150 (615)
T ss_dssp             EEEEEEEEEEGGGT-EEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTC-----------------
T ss_pred             EEEEEeCCCCcccc-cccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEECC-----------------
Confidence            99999996441000 00123456778899999999999999999999988    799999832                 


Q ss_pred             CccccccccccccccccCCccceEEEEeC-CCC-eEEEEecCCcEEEEECCCCceeeeeee-Ce---eeEEEEeeCCCCc
Q 036314          167 NQVEEPQLEGEAISTLVGHTQCVSSVVWP-QQE-TIYSASWDHSVRTWDVEMGKDLSDIFC-GK---ALNCIDIGGEGSA  240 (347)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~-~l~s~s~dg~v~vwd~~~~~~~~~~~~-~~---~~~~~~~~~~~~~  240 (347)
                                ..+..+.+|...|.++.|. +++ .+++++.|+.|++||+++++.+..+.. ..   .+.+++++++++.
T Consensus       151 ----------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  220 (615)
T 1pgu_A          151 ----------NSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGE  220 (615)
T ss_dssp             ----------CEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCC
T ss_pred             ----------CcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCC
Confidence                      2345677899999999985 555 799999999999999998887777663 34   6899999876367


Q ss_pred             EEEEecCCCcEEEEeCCCCCCCCCeEEe-c---CCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecCC--
Q 036314          241 LIAAGGSDPILRIWDPRKPGTSAPVFQF-S---SHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSH--  314 (347)
Q Consensus       241 ~la~~~~d~~i~iwd~~~~~~~~~~~~~-~---~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h--  314 (347)
                      ++++++.|+.|++||++..   ..+..+ .   +|...|.++.|+ ++. +|++++.|+.|++||+++++.+..+..|  
T Consensus       221 ~l~~~~~dg~i~vwd~~~~---~~~~~~~~~~~~~~~~v~~~~~~-~~~-~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~  295 (615)
T 1pgu_A          221 FVITVGSDRKISCFDGKSG---EFLKYIEDDQEPVQGGIFALSWL-DSQ-KFATVGADATIRVWDVTTSKCVQKWTLDKQ  295 (615)
T ss_dssp             EEEEEETTCCEEEEETTTC---CEEEECCBTTBCCCSCEEEEEES-SSS-EEEEEETTSEEEEEETTTTEEEEEEECCTT
T ss_pred             EEEEEeCCCeEEEEECCCC---CEeEEecccccccCCceEEEEEc-CCC-EEEEEcCCCcEEEEECCCCcEEEEEcCCCC
Confidence            8899999999999998753   345666 5   899999999999 764 6999999999999999999888888766  


Q ss_pred             --CCeEEEEeecCCCEEEEccCCceEEEeecc
Q 036314          315 --KDKVLCADWWRGDSVISGGVDSKLCVSSGV  344 (347)
Q Consensus       315 --~~~v~~~~~~~~~~l~s~s~D~~v~vw~~~  344 (347)
                        ...+.++.|++++++++++.|+.|++|+..
T Consensus       296 ~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~  327 (615)
T 1pgu_A          296 QLGNQQVGVVATGNGRIISLSLDGTLNFYELG  327 (615)
T ss_dssp             CGGGCEEEEEEEETTEEEEEETTSCEEEEETT
T ss_pred             cccCceeEEEeCCCCeEEEEECCCCEEEEECC
Confidence              367888899888899999999999999864

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=1.3e-34  Score=256.98  Aligned_cols=278  Identities=19%  Similarity=0.188  Sum_probs=211.8

Q ss_pred             CCCCCcCCceeeccCC-CCCEEEEEecCCeEEEEcCCC-----eEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCc
Q 036314           18 EEPSLHDDWVSAVDGS-NPGFILTGCYDNLGRVWKAGG-----VCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQT   91 (347)
Q Consensus        18 ~~~~~h~~~v~~~~~~-~~~~l~sg~~d~~i~iw~~~~-----~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~   91 (347)
                      ....+|++.|++++++ ++.+||+|+.||+|++||...     .....+.+|...|.+++|+|..  ++..|++++.||+
T Consensus         5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--d~~~l~s~~~dg~   82 (351)
T 3f3f_A            5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPE--YGRIIASASYDKT   82 (351)
T ss_dssp             CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGG--GCSEEEEEETTSC
T ss_pred             ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCC--CCCEEEEEcCCCe
Confidence            3457899999999998 567999999999999999752     3667789999999999999841  1237999999999


Q ss_pred             EEEEeccccccccCccccceeeeeeccccceEEEEEeCC--CCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCcc
Q 036314           92 LRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETS--GNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQV  169 (347)
Q Consensus        92 v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~--~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~  169 (347)
                      |++||+..++........+....+.+|..+|.+++|+|+  ++++++++.|++|++||+.+.............      
T Consensus        83 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~------  156 (351)
T 3f3f_A           83 VKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEM------  156 (351)
T ss_dssp             EEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEE------
T ss_pred             EEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccc------
Confidence            999999876432222333556778899999999999999  999999999999999998865432211100000      


Q ss_pred             ccccccccccccccCCccceEEEEeC-C---CCeEEEEecCCcEEEEECCCCce--eeeee-eCeeeEEEEeeCCCC---
Q 036314          170 EEPQLEGEAISTLVGHTQCVSSVVWP-Q---QETIYSASWDHSVRTWDVEMGKD--LSDIF-CGKALNCIDIGGEGS---  239 (347)
Q Consensus       170 ~~~~~~~~~~~~~~~h~~~v~~~~~~-~---~~~l~s~s~dg~v~vwd~~~~~~--~~~~~-~~~~~~~~~~~~~~~---  239 (347)
                            ........+|...+.++.|. +   +..+++++.|+.+.+|+...+..  +..+. +...+.++++++++.   
T Consensus       157 ------~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~  230 (351)
T 3f3f_A          157 ------KVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWY  230 (351)
T ss_dssp             ------ESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSS
T ss_pred             ------cccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcc
Confidence                  00011223577788999984 3   77899999999998888777654  33333 234789999987653   


Q ss_pred             cEEEEecCCCcEEEEeCCCCCC-------------------------------------------CCCeEEecCCCCCee
Q 036314          240 ALIAAGGSDPILRIWDPRKPGT-------------------------------------------SAPVFQFSSHNSWIS  276 (347)
Q Consensus       240 ~~la~~~~d~~i~iwd~~~~~~-------------------------------------------~~~~~~~~~h~~~v~  276 (347)
                      .+|++++.|+.|++||++....                                           ...+..+.+|...|.
T Consensus       231 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~  310 (351)
T 3f3f_A          231 QLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVW  310 (351)
T ss_dssp             EEEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEE
T ss_pred             eEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEE
Confidence            6899999999999999864210                                           124556788999999


Q ss_pred             EEEeCCCCCeEEEEEeCCCcEEEEEcCCCcccee
Q 036314          277 ACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSV  310 (347)
Q Consensus       277 ~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~  310 (347)
                      +++|+|++. +|++++.||.|++||+++++....
T Consensus       311 ~~~~s~~~~-~l~s~~~dg~v~iw~~~~~~~~~~  343 (351)
T 3f3f_A          311 SVSWNLTGT-ILSSAGDDGKVRLWKATYSNEFKC  343 (351)
T ss_dssp             EEEECSSSC-CEEEEETTSCEEEEEECTTSCEEE
T ss_pred             EEEEcCCCC-EEEEecCCCcEEEEecCcCcchhh
Confidence            999999986 599999999999999998765443

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=1.3e-34  Score=282.36  Aligned_cols=252  Identities=19%  Similarity=0.322  Sum_probs=205.0

Q ss_pred             EEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEEE
Q 036314           56 CTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVC  135 (347)
Q Consensus        56 ~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~  135 (347)
                      ....+.+|.+.|.+++|++++.   ..|+|||.|++|++|++.....    ........+.+|...|.+++|+|++++|+
T Consensus       374 ~~~~l~~H~~~V~~v~~~~~~~---~~l~s~s~D~~i~~W~~~~~~~----~~~~~~~~~~~h~~~v~~v~~s~~g~~l~  446 (694)
T 3dm0_A          374 LKGTMRAHTDMVTAIATPIDNA---DIIVSASRDKSIILWKLTKDDK----AYGVAQRRLTGHSHFVEDVVLSSDGQFAL  446 (694)
T ss_dssp             EEEEEECCSSCEEEEECCTTCC---SEEEEEETTSEEEEEECCCSTT----CSCEEEEEEECCSSCEEEEEECTTSSEEE
T ss_pred             hhhhcccCCceeEEEEecCCCC---CEEEEEeCCCcEEEEEccCCCc----ccccccceecCCCCcEEEEEECCCCCEEE
Confidence            3456899999999999987543   3799999999999999875421    11124457889999999999999999999


Q ss_pred             EeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEe-CCCCeEEEEecCCcEEEEEC
Q 036314          136 SGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDV  214 (347)
Q Consensus       136 sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~l~s~s~dg~v~vwd~  214 (347)
                      ||+.|++|+|||+.+.                         .....+.+|...|.+++| +++..|++++.|++|++||+
T Consensus       447 sgs~Dg~v~vwd~~~~-------------------------~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~  501 (694)
T 3dm0_A          447 SGSWDGELRLWDLAAG-------------------------VSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNT  501 (694)
T ss_dssp             EEETTSEEEEEETTTT-------------------------EEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECT
T ss_pred             EEeCCCcEEEEECCCC-------------------------cceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEC
Confidence            9999999999998753                         335567889999999998 57788999999999999998


Q ss_pred             CCCceeeeee----eCeeeEEEEeeCCC-CcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEE
Q 036314          215 EMGKDLSDIF----CGKALNCIDIGGEG-SALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLI  289 (347)
Q Consensus       215 ~~~~~~~~~~----~~~~~~~~~~~~~~-~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~  289 (347)
                      ..........    +...+.++.+++++ ...+++++.|++|++||++..   .....+.+|...|.+++|+|++. +|+
T Consensus       502 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~---~~~~~~~~h~~~v~~v~~spdg~-~l~  577 (694)
T 3dm0_A          502 LGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNC---KLRSTLAGHTGYVSTVAVSPDGS-LCA  577 (694)
T ss_dssp             TSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTC---CEEEEECCCSSCEEEEEECTTSS-EEE
T ss_pred             CCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCC---cEEEEEcCCCCCEEEEEEeCCCC-EEE
Confidence            6543222111    23358899998765 357899999999999999753   34678899999999999999986 699


Q ss_pred             EEeCCCcEEEEEcCCCccceeecCCCCeEEEEeecCCCEEEEccCCceEEEeecc
Q 036314          290 SASYDGKVMLWDLRTAWPLSVIDSHKDKVLCADWWRGDSVISGGVDSKLCVSSGV  344 (347)
Q Consensus       290 s~s~D~~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~D~~v~vw~~~  344 (347)
                      +|+.|++|++||+++++.+..+.. ...|.+++|+|+.++++++.|+.|+||+..
T Consensus       578 sg~~Dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~sp~~~~l~~~~~~~i~iwd~~  631 (694)
T 3dm0_A          578 SGGKDGVVLLWDLAEGKKLYSLEA-NSVIHALCFSPNRYWLCAATEHGIKIWDLE  631 (694)
T ss_dssp             EEETTSBCEEEETTTTEEEECCBC-SSCEEEEEECSSSSEEEEEETTEEEEEETT
T ss_pred             EEeCCCeEEEEECCCCceEEEecC-CCcEEEEEEcCCCcEEEEEcCCCEEEEECC
Confidence            999999999999999988877765 468999999986665566678889999864

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=2.9e-34  Score=263.54  Aligned_cols=261  Identities=19%  Similarity=0.274  Sum_probs=207.1

Q ss_pred             CCCcCCceeeccCC-CCCEEEEEecCCeEEEEcCC-CeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEec
Q 036314           20 PSLHDDWVSAVDGS-NPGFILTGCYDNLGRVWKAG-GVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKF   97 (347)
Q Consensus        20 ~~~h~~~v~~~~~~-~~~~l~sg~~d~~i~iw~~~-~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~   97 (347)
                      ..+|.+.|++++|+ ++.+||+|+.|++|++||.. +.+++.+.+|...|.++.+.+      ..|++|+.|+++++||.
T Consensus       143 ~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~~------~~l~sgs~d~~i~~~d~  216 (420)
T 4gga_A          143 MEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNS------YILSSGSRSGHIHHHDV  216 (420)
T ss_dssp             CCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEET------TEEEEEETTSEEEEEET
T ss_pred             ecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeCC------CEEEEEeCCCceeEeee
Confidence            34788999999998 56799999999999999974 788899999999999988754      36999999999999998


Q ss_pred             cccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCcccccccccc
Q 036314           98 DAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGE  177 (347)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (347)
                      ....        .....+.+|...+..+.++++++++++++.|+.+++|+.......                     ..
T Consensus       217 ~~~~--------~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~---------------------~~  267 (420)
T 4gga_A          217 RVAE--------HHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGG---------------------WV  267 (420)
T ss_dssp             TSSS--------CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSC---------------------SC
T ss_pred             cccc--------eeeEEecccccceeeeeecCCCCeeeeeeccccceEEeecccccc---------------------ce
Confidence            6532        345678899999999999999999999999999999998764321                     11


Q ss_pred             ccccccCCccceEEEEeC-CC-CeEEE--EecCCcEEEEECCCCceeeeeeeCeeeEEEEeeCCCCcEEEE-ecCCCcEE
Q 036314          178 AISTLVGHTQCVSSVVWP-QQ-ETIYS--ASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEGSALIAA-GGSDPILR  252 (347)
Q Consensus       178 ~~~~~~~h~~~v~~~~~~-~~-~~l~s--~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~-~~~d~~i~  252 (347)
                      .+.....|...|.+++|. .+ ..+++  ++.|++|++||++++.....+..+..+.++.+.+++..++++ |..|+.|+
T Consensus       268 ~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~  347 (420)
T 4gga_A          268 PLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLV  347 (420)
T ss_dssp             CSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEE
T ss_pred             eeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccccceeeeeecCCCCeEEEEEecCCCEEE
Confidence            234556788899999984 33 44544  468999999999999988888777788888888777666544 34799999


Q ss_pred             EEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecCCCCeEE
Q 036314          253 IWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKVL  319 (347)
Q Consensus       253 iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h~~~v~  319 (347)
                      +||++.   ..++..+.+|.+.|.+++|+|++. +||||+.|++|+|||+....+....+.|...+.
T Consensus       348 iwd~~~---~~~v~~l~gH~~~V~~l~~spdg~-~l~S~s~D~tvriWdv~~~~~~~~~~~~~~~~~  410 (420)
T 4gga_A          348 IWKYPT---MAKVAELKGHTSRVLSLTMSPDGA-TVASAAADETLRLWRCFELDPARRREREKASAA  410 (420)
T ss_dssp             EEETTT---CCEEEEECCCSSCEEEEEECTTSS-CEEEEETTTEEEEECCSCSSCC-----------
T ss_pred             EEECCC---CcEEEEEcCCCCCEEEEEEcCCCC-EEEEEecCCeEEEEECCCCCccchhhhccCCcc
Confidence            999875   345788999999999999999986 599999999999999988776666665554443

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=3.4e-35  Score=268.05  Aligned_cols=281  Identities=16%  Similarity=0.170  Sum_probs=216.2

Q ss_pred             ccCCCCC--EEEEEecCCeEEEEcCCC-----eEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEecccccc
Q 036314           30 VDGSNPG--FILTGCYDNLGRVWKAGG-----VCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEEL  102 (347)
Q Consensus        30 ~~~~~~~--~l~sg~~d~~i~iw~~~~-----~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~  102 (347)
                      +++++..  ++++++.||.|++|+...     .....+.+|.+.|.+++|+|.++   ..|++|+.||+|++||+..++.
T Consensus        40 ~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~---~~l~s~s~dg~v~vw~~~~~~~  116 (402)
T 2aq5_A           40 CAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHND---NVIASGSEDCTVMVWEIPDGGL  116 (402)
T ss_dssp             EEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCT---TEEEEEETTSEEEEEECCTTCC
T ss_pred             EEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCC---CEEEEEeCCCeEEEEEccCCCC
Confidence            4444332  455789999999999743     13446889999999999998332   2799999999999999987643


Q ss_pred             ccCccccceeeeeeccccceEEEEEeCCC-CEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCcccccccccccccc
Q 036314          103 VNHPKKIRSFKILRGHKASVHSIAAETSG-NMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAIST  181 (347)
Q Consensus       103 ~~~~~~~~~~~~~~~h~~~V~~v~~s~~~-~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (347)
                      ...  ..++...+.+|...|.+++|+|++ ++|++++.|++|++||+.+.                         +.+..
T Consensus       117 ~~~--~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~-------------------------~~~~~  169 (402)
T 2aq5_A          117 VLP--LREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTG-------------------------AAVLT  169 (402)
T ss_dssp             SSC--BCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTT-------------------------EEEEE
T ss_pred             ccc--cCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCC-------------------------CccEE
Confidence            211  113456788999999999999998 69999999999999998753                         23445


Q ss_pred             c--cCCccceEEEEe-CCCCeEEEEecCCcEEEEECCCCceeeee-eeCe--eeEEEEeeCCCCcEEEEe---cCCCcEE
Q 036314          182 L--VGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDI-FCGK--ALNCIDIGGEGSALIAAG---GSDPILR  252 (347)
Q Consensus       182 ~--~~h~~~v~~~~~-~~~~~l~s~s~dg~v~vwd~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~la~~---~~d~~i~  252 (347)
                      +  .+|...|.+++| +++..|++++.|+.|++||+++++.+..+ ..+.  .+.++.+.++ +.++++|   +.|+.|+
T Consensus       170 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~g~~~~~d~~i~  248 (402)
T 2aq5_A          170 LGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSE-GKILTTGFSRMSERQVA  248 (402)
T ss_dssp             ECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECST-TEEEEEEECTTCCEEEE
T ss_pred             EecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCC-CcEEEEeccCCCCceEE
Confidence            5  679999999999 57788999999999999999998887776 3322  3678888764 5688888   7899999


Q ss_pred             EEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCcc-ceeecC--CCCeEEEEeecCCC-E
Q 036314          253 IWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWP-LSVIDS--HKDKVLCADWWRGD-S  328 (347)
Q Consensus       253 iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~-~~~~~~--h~~~v~~~~~~~~~-~  328 (347)
                      +||++....+.... ...|...+.++.|+|++..++++++.|+.|++||++++++ +..+..  |.+.|.+++|+|.. .
T Consensus       249 iwd~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~  327 (402)
T 2aq5_A          249 LWDTKHLEEPLSLQ-ELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGL  327 (402)
T ss_dssp             EEETTBCSSCSEEE-ECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGS
T ss_pred             EEcCccccCCceEE-eccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccc
Confidence            99998643322222 2357778999999999987556777899999999998875 555544  45899999998754 4


Q ss_pred             EEEccCCceEEEeecc
Q 036314          329 VISGGVDSKLCVSSGV  344 (347)
Q Consensus       329 l~s~s~D~~v~vw~~~  344 (347)
                      ++  +.|+.+++|+..
T Consensus       328 ~~--s~~~~~~~~~l~  341 (402)
T 2aq5_A          328 EV--NKCEIARFYKLH  341 (402)
T ss_dssp             CG--GGTEEEEEEEEE
T ss_pred             ce--ecceeEEEEEcC
Confidence            44  457799999864

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=4.2e-34  Score=253.30  Aligned_cols=282  Identities=16%  Similarity=0.166  Sum_probs=225.4

Q ss_pred             CcCCceeeccCC-CCCEEEEEecCCeEEEEcCCC-eEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccc
Q 036314           22 LHDDWVSAVDGS-NPGFILTGCYDNLGRVWKAGG-VCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDA   99 (347)
Q Consensus        22 ~h~~~v~~~~~~-~~~~l~sg~~d~~i~iw~~~~-~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~   99 (347)
                      .|.+.|.+++++ ++.++++++.++.+..|.... .......+|...|.+++|+|++    ..|++++ ||+|++||+..
T Consensus         7 ~~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~----~~l~~~~-dg~i~iw~~~~   81 (337)
T 1gxr_A            7 MGSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPT----RHVYTGG-KGCVKVWDISH   81 (337)
T ss_dssp             EEEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSS----SEEEEEC-BSEEEEEETTS
T ss_pred             ccCCceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCC----cEEEEcC-CCeEEEEECCC
Confidence            356789999998 566888888777777776543 3333455899999999999854    3688888 99999999986


Q ss_pred             cccccCccccceeeeee--ccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCcccccccccc
Q 036314          100 EELVNHPKKIRSFKILR--GHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGE  177 (347)
Q Consensus       100 ~~~~~~~~~~~~~~~~~--~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (347)
                      ++..      ..+..+.  +|..+|.+++|+|+++++++++.|+.|++||+.+...                       .
T Consensus        82 ~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~-----------------------~  132 (337)
T 1gxr_A           82 PGNK------SPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTP-----------------------R  132 (337)
T ss_dssp             TTCC------SCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC-------------------------E
T ss_pred             CCce------eeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCc-----------------------c
Confidence            5422      1222333  7999999999999999999999999999999875421                       1


Q ss_pred             ccccccCCccceEEEEe-CCCCeEEEEecCCcEEEEECCCCceeeeeee-CeeeEEEEeeCCCCcEEEEecCCCcEEEEe
Q 036314          178 AISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFC-GKALNCIDIGGEGSALIAAGGSDPILRIWD  255 (347)
Q Consensus       178 ~~~~~~~h~~~v~~~~~-~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~la~~~~d~~i~iwd  255 (347)
                      ....+..|...+.++.| ++++.+++++.|+.|++||+++++.+..+.. ...+.+++++++ +..+++++.|+.|++||
T Consensus       133 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~~~d  211 (337)
T 1gxr_A          133 IKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISND-GTKLWTGGLDNTVRSWD  211 (337)
T ss_dssp             EEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTT-SSEEEEEETTSEEEEEE
T ss_pred             eeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCC-CCEEEEEecCCcEEEEE
Confidence            23456678888999998 5778899999999999999999887776653 457889999765 46888999999999999


Q ss_pred             CCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecCCCCeEEEEeecC-CCEEEEccC
Q 036314          256 PRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKVLCADWWR-GDSVISGGV  334 (347)
Q Consensus       256 ~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~l~s~s~  334 (347)
                      ++...   ....+ .|...+.+++|+|++. +|++++.|+.|++||+++++ ...+..|.+.|.++.|+| +++|++++.
T Consensus       212 ~~~~~---~~~~~-~~~~~v~~~~~s~~~~-~l~~~~~~~~i~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~  285 (337)
T 1gxr_A          212 LREGR---QLQQH-DFTSQIFSLGYCPTGE-WLAVGMESSNVEVLHVNKPD-KYQLHLHESCVLSLKFAYCGKWFVSTGK  285 (337)
T ss_dssp             TTTTE---EEEEE-ECSSCEEEEEECTTSS-EEEEEETTSCEEEEETTSSC-EEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             CCCCc---eEeee-cCCCceEEEEECCCCC-EEEEEcCCCcEEEEECCCCC-eEEEcCCccceeEEEECCCCCEEEEecC
Confidence            97532   23333 4778899999999986 59999999999999999875 456788999999999985 778999999


Q ss_pred             CceEEEeecc
Q 036314          335 DSKLCVSSGV  344 (347)
Q Consensus       335 D~~v~vw~~~  344 (347)
                      |+.|++|+..
T Consensus       286 dg~i~~~~~~  295 (337)
T 1gxr_A          286 DNLLNAWRTP  295 (337)
T ss_dssp             TSEEEEEETT
T ss_pred             CCcEEEEECC
Confidence            9999999865

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=5.6e-34  Score=259.14  Aligned_cols=286  Identities=16%  Similarity=0.251  Sum_probs=215.5

Q ss_pred             CCCCcCCceeeccCCC--CCEEEEEecCCeEEEEcCCC-eEEEEe-------------eccCCceEEEEEeecCCCceEE
Q 036314           19 EPSLHDDWVSAVDGSN--PGFILTGCYDNLGRVWKAGG-VCTHIL-------------EGHCGAVSSVNIIKSDGLKYVT   82 (347)
Q Consensus        19 ~~~~h~~~v~~~~~~~--~~~l~sg~~d~~i~iw~~~~-~~~~~l-------------~~h~~~V~~v~~~~~~~~~~~~   82 (347)
                      ...+|.+.|+++++++  +.+||+|+.||+|++||... .....+             .+|...|.+++|+|.++   ..
T Consensus        38 ~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~  114 (408)
T 4a11_B           38 VERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDT---GM  114 (408)
T ss_dssp             ECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCT---TC
T ss_pred             eeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCC---cE
Confidence            4567999999999875  56999999999999999742 211111             25999999999998443   26


Q ss_pred             EEEccCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCC---CCEEEEeeCCCcEEEEecCCCCCCCccce
Q 036314           83 VATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETS---GNMVCSGSWDCTISLWRTNDSDAAGNQVS  159 (347)
Q Consensus        83 l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~---~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~  159 (347)
                      |++++.||+|++||+..++.         ...+ .|...+.++.+++.   +.++++++.|+.|++||+.+.        
T Consensus       115 l~s~~~d~~i~iwd~~~~~~---------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~--------  176 (408)
T 4a11_B          115 FTSSSFDKTLKVWDTNTLQT---------ADVF-NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSG--------  176 (408)
T ss_dssp             EEEEETTSEEEEEETTTTEE---------EEEE-ECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSS--------
T ss_pred             EEEEeCCCeEEEeeCCCCcc---------ceec-cCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCc--------
Confidence            89999999999999986542         2233 36788999999885   459999999999999998753        


Q ss_pred             eeeccCCCccccccccccccccccCCccceEEEEeC-CCC-eEEEEecCCcEEEEECCCCc-eeeee-------------
Q 036314          160 IKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWP-QQE-TIYSASWDHSVRTWDVEMGK-DLSDI-------------  223 (347)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~-~l~s~s~dg~v~vwd~~~~~-~~~~~-------------  223 (347)
                                       ..+..+.+|...|.++.|. ++. .+++++.||.|++||++.+. .+..+             
T Consensus       177 -----------------~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  239 (408)
T 4a11_B          177 -----------------SCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVES  239 (408)
T ss_dssp             -----------------CCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTT
T ss_pred             -----------------ceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeecc
Confidence                             2345667899999999984 556 48899999999999998765 22222             


Q ss_pred             ---eeCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeE--EecCCCCCeeEEEeCCCCCeEEEEEeCCCcEE
Q 036314          224 ---FCGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVF--QFSSHNSWISACKWHNKSWFHLISASYDGKVM  298 (347)
Q Consensus       224 ---~~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~--~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~  298 (347)
                         .+...+.+++++++ +..+++++.|+.|++||++.........  ........+ .+.+.......++.++.|+.|+
T Consensus       240 ~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~  317 (408)
T 4a11_B          240 ANTAHNGKVNGLCFTSD-GLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGL-KFTVSCGCSSEFVFVPYGSTIA  317 (408)
T ss_dssp             SSCSCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCC-CCEECCSSSSCEEEEEETTEEE
T ss_pred             ccccccCceeEEEEcCC-CCEEEEecCCCeEEEEECCCCccceeccccccccccccc-eeEEecCCCceEEEEecCCEEE
Confidence               12346889999764 5688899999999999997543211100  000111111 1222222223577888999999


Q ss_pred             EEEcCCCccceeecCCCCeEEEEeecC-CCEEEEccCCceEEEeecc
Q 036314          299 LWDLRTAWPLSVIDSHKDKVLCADWWR-GDSVISGGVDSKLCVSSGV  344 (347)
Q Consensus       299 lwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~l~s~s~D~~v~vw~~~  344 (347)
                      +||+++++.+..+.+|.+.|.+++|+| +++|++++.||+|++|+..
T Consensus       318 v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~  364 (408)
T 4a11_B          318 VYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPS  364 (408)
T ss_dssp             EEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEEC
T ss_pred             EEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCC
Confidence            999999999999999999999999985 6789999999999999875

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=1.2e-34  Score=299.31  Aligned_cols=306  Identities=18%  Similarity=0.246  Sum_probs=239.9

Q ss_pred             CCCcCCceeeccCC-CCCEEEEEecCCeEEEEcCC-CeEEEE--------------------------------------
Q 036314           20 PSLHDDWVSAVDGS-NPGFILTGCYDNLGRVWKAG-GVCTHI--------------------------------------   59 (347)
Q Consensus        20 ~~~h~~~v~~~~~~-~~~~l~sg~~d~~i~iw~~~-~~~~~~--------------------------------------   59 (347)
                      ..+|.+.|++++++ ++.+|++++.||+|++||.. +.....                                      
T Consensus       739 ~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~  818 (1249)
T 3sfz_A          739 MFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAK  818 (1249)
T ss_dssp             ECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEET
T ss_pred             ecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcC
Confidence            45799999999998 46799999999999999863 322211                                      


Q ss_pred             -----------------eeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeeeeccccce
Q 036314           60 -----------------LEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASV  122 (347)
Q Consensus        60 -----------------l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V  122 (347)
                                       ..+|...|.+++|+|++.    .+++++.|++|++|++.+++         ....+.+|...|
T Consensus       819 ~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~----~l~~~~~dg~v~vwd~~~~~---------~~~~~~~h~~~v  885 (1249)
T 3sfz_A          819 NKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDH----LAVIALSQYCVELWNIDSRL---------KVADCRGHLSWV  885 (1249)
T ss_dssp             TEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTT----EEEEECSSSCEEEEETTTTE---------EEEEECCCSSCE
T ss_pred             CcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCC----EEEEEeCCCeEEEEEcCCCc---------eeeecCCCccce
Confidence                             127888899999998543    68999999999999997653         456778999999


Q ss_pred             EEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCcc-------------------------------------------ce
Q 036314          123 HSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQ-------------------------------------------VS  159 (347)
Q Consensus       123 ~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~-------------------------------------------~~  159 (347)
                      .+++|+|+++++++++.|++|++|++.........                                           ..
T Consensus       886 ~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  965 (1249)
T 3sfz_A          886 HGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVS  965 (1249)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEE
T ss_pred             EEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEE
Confidence            99999999999999999999999996531100000                                           00


Q ss_pred             -eeeccCCC---------cccc-ccccccccccccCCccceEEEEe-CCCCeEEEEecCCcEEEEECCCCceeeeeeeCe
Q 036314          160 -IKKRKGNN---------QVEE-PQLEGEAISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFCGK  227 (347)
Q Consensus       160 -~~~~~~~~---------~~~~-~~~~~~~~~~~~~h~~~v~~~~~-~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~  227 (347)
                       ....+...         .+.. ....+.....+.+|...|.+++| ++++.|++++.|++|++||+.++..........
T Consensus       966 ~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 1045 (1249)
T 3sfz_A          966 CCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQE 1045 (1249)
T ss_dssp             EEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECCBCCSS
T ss_pred             EEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEEecCCC
Confidence             00000000         0000 00123344566789999999998 577899999999999999999987765444556


Q ss_pred             eeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCcc
Q 036314          228 ALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWP  307 (347)
Q Consensus       228 ~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~  307 (347)
                      .+.++.+.++  ..+++++.|+.|++||+...   .....+.+|...|.+++|+|++. +|++++.|++|++||+.++.+
T Consensus      1046 ~v~~~~~~~~--~~l~~~~~dg~v~vwd~~~~---~~~~~~~~~~~~v~~~~~s~d~~-~l~s~s~d~~v~iwd~~~~~~ 1119 (1249)
T 3sfz_A         1046 TVKDFRLLQD--SRLLSWSFDGTVKVWNVITG---RIERDFTCHQGTVLSCAISSDAT-KFSSTSADKTAKIWSFDLLSP 1119 (1249)
T ss_dssp             CEEEEEECSS--SEEEEEESSSEEEEEETTTT---CCCEEEECCSSCCCCEEECSSSS-SCEEECCSSCCCEECSSSSSC
T ss_pred             cEEEEEEcCC--CcEEEEECCCcEEEEECCCC---ceeEEEcccCCcEEEEEECCCCC-EEEEEcCCCcEEEEECCCcce
Confidence            7888888764  35778899999999999753   34677889999999999999986 499999999999999999999


Q ss_pred             ceeecCCCCeEEEEeecC-CCEEEEccCCceEEEeecc
Q 036314          308 LSVIDSHKDKVLCADWWR-GDSVISGGVDSKLCVSSGV  344 (347)
Q Consensus       308 ~~~~~~h~~~v~~~~~~~-~~~l~s~s~D~~v~vw~~~  344 (347)
                      +..+.+|.+.|.+++|+| |++||+++.||+|+||+..
T Consensus      1120 ~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~ 1157 (1249)
T 3sfz_A         1120 LHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVS 1157 (1249)
T ss_dssp             SBCCCCCSSCEEEEEECSSSSEEEEEETTSCCCEEESS
T ss_pred             eeeeccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECC
Confidence            999999999999999985 7789999999999999865

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3e-34  Score=258.37  Aligned_cols=254  Identities=16%  Similarity=0.191  Sum_probs=203.3

Q ss_pred             CCCCcCCceeeccCC-CCCEEEEEecCCeEEEEcCC---CeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEE
Q 036314           19 EPSLHDDWVSAVDGS-NPGFILTGCYDNLGRVWKAG---GVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRL   94 (347)
Q Consensus        19 ~~~~h~~~v~~~~~~-~~~~l~sg~~d~~i~iw~~~---~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~   94 (347)
                      ...+|++.|++++++ ++.+||+|+.|++|++|+..   +.....+.+|.+.|.+++|+++.  ++..|++++.||+|++
T Consensus         6 ~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~~~l~s~~~dg~v~i   83 (379)
T 3jrp_A            6 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK--FGTILASCSYDGKVLI   83 (379)
T ss_dssp             CEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGG--GCSEEEEEETTSCEEE
T ss_pred             EecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCC--CCCEEEEeccCCEEEE
Confidence            456899999999998 56799999999999999974   35667899999999999998742  1347999999999999


Q ss_pred             EeccccccccCccccceeeeeeccccceEEEEEeCC--CCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccc
Q 036314           95 WKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETS--GNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEP  172 (347)
Q Consensus        95 wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~--~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  172 (347)
                      ||+..++.       .....+.+|...|.+++|+|+  ++++++++.|++|++||+.....                   
T Consensus        84 wd~~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~-------------------  137 (379)
T 3jrp_A           84 WKEENGRW-------SQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT-------------------  137 (379)
T ss_dssp             EEEETTEE-------EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSC-------------------
T ss_pred             EEcCCCce-------eEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCc-------------------
Confidence            99986531       245567789999999999999  99999999999999999875421                   


Q ss_pred             cccccccccccCCccceEEEEeC--------------CCCeEEEEecCCcEEEEECCCCceee----eee-eCeeeEEEE
Q 036314          173 QLEGEAISTLVGHTQCVSSVVWP--------------QQETIYSASWDHSVRTWDVEMGKDLS----DIF-CGKALNCID  233 (347)
Q Consensus       173 ~~~~~~~~~~~~h~~~v~~~~~~--------------~~~~l~s~s~dg~v~vwd~~~~~~~~----~~~-~~~~~~~~~  233 (347)
                          .....+.+|...|.++.|.              ++..+++++.|+.|++||++.+....    .+. +...+.+++
T Consensus       138 ----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~  213 (379)
T 3jrp_A          138 ----TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVA  213 (379)
T ss_dssp             ----CCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEE
T ss_pred             ----eeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEE
Confidence                1122456788899999984              37889999999999999998765332    222 245789999


Q ss_pred             eeCCC--CcEEEEecCCCcEEEEeCCCCCCCCCeE--EecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCC
Q 036314          234 IGGEG--SALIAAGGSDPILRIWDPRKPGTSAPVF--QFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTA  305 (347)
Q Consensus       234 ~~~~~--~~~la~~~~d~~i~iwd~~~~~~~~~~~--~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~  305 (347)
                      ++|++  +.++++++.|+.|++||++.........  ....|...|.+++|+|++. +|++++.||.|++||++.+
T Consensus       214 ~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~~dg~i~iw~~~~~  288 (379)
T 3jrp_A          214 WSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGN-VLALSGGDNKVTLWKENLE  288 (379)
T ss_dssp             ECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSC-CEEEEESSSSEEEEEEEET
T ss_pred             ECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCC-EEEEecCCCcEEEEeCCCC
Confidence            98764  6789999999999999987643221122  2234888999999999986 5999999999999999843

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=2.2e-34  Score=275.84  Aligned_cols=275  Identities=17%  Similarity=0.201  Sum_probs=226.7

Q ss_pred             CCCCcCCc-eeeccCCC--C-CEEEEEecCCeEEEEcCC-C--------eEEEEeeccCCceEEEEEeecCCCceEEEEE
Q 036314           19 EPSLHDDW-VSAVDGSN--P-GFILTGCYDNLGRVWKAG-G--------VCTHILEGHCGAVSSVNIIKSDGLKYVTVAT   85 (347)
Q Consensus        19 ~~~~h~~~-v~~~~~~~--~-~~l~sg~~d~~i~iw~~~-~--------~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s   85 (347)
                      ...+|.+. |+++++++  + .+||+|+.||+|++||.. +        .....+.+|...|.+++|+|++    ..|++
T Consensus        58 ~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~----~~l~~  133 (615)
T 1pgu_A           58 QFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEG----RRLCV  133 (615)
T ss_dssp             EECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTS----SEEEE
T ss_pred             EEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCC----CEEEE
Confidence            35689999 99999876  4 599999999999999973 3        5677888999999999999854    36888


Q ss_pred             ccCC----CcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCC-EEEEeeCCCcEEEEecCCCCCCCcccee
Q 036314           86 ASKD----QTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGN-MVCSGSWDCTISLWRTNDSDAAGNQVSI  160 (347)
Q Consensus        86 ~s~D----g~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~-~l~sgs~Dg~I~iwd~~~~~~~~~~~~~  160 (347)
                      ++.|    +.|++||..           +....+.+|...|.+++|+|+++ ++++++.|++|++||+.+.         
T Consensus       134 ~~~~~~~~~~v~~~d~~-----------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~---------  193 (615)
T 1pgu_A          134 VGEGRDNFGVFISWDSG-----------NSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPF---------  193 (615)
T ss_dssp             EECCSSCSEEEEETTTC-----------CEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTB---------
T ss_pred             eccCCCCccEEEEEECC-----------CcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCc---------
Confidence            8888    789999832           24556789999999999999998 8999999999999997642         


Q ss_pred             eeccCCCccccccccccccccccCCcc---ceEEEEe-CC-CCeEEEEecCCcEEEEECCCCceeeee-----eeCeeeE
Q 036314          161 KKRKGNNQVEEPQLEGEAISTLVGHTQ---CVSSVVW-PQ-QETIYSASWDHSVRTWDVEMGKDLSDI-----FCGKALN  230 (347)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~~~~-~~-~~~l~s~s~dg~v~vwd~~~~~~~~~~-----~~~~~~~  230 (347)
                                      +.+..+.+|..   .|.+++| |+ +++|++++.|+.|++||+++++.+..+     .+...+.
T Consensus       194 ----------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~  257 (615)
T 1pgu_A          194 ----------------KFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIF  257 (615)
T ss_dssp             ----------------EEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEE
T ss_pred             ----------------ceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceE
Confidence                            33556778888   9999998 56 788999999999999999999888877     3455788


Q ss_pred             EEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCC----CCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCc
Q 036314          231 CIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSH----NSWISACKWHNKSWFHLISASYDGKVMLWDLRTAW  306 (347)
Q Consensus       231 ~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h----~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~  306 (347)
                      ++.+.  ++..+++++.|+.|++||++..   .....+..+    ...+.++.|+ ++. +|++++.|+.|++||+++++
T Consensus       258 ~~~~~--~~~~l~~~~~d~~i~~wd~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~-~l~~~~~~g~i~~~d~~~~~  330 (615)
T 1pgu_A          258 ALSWL--DSQKFATVGADATIRVWDVTTS---KCVQKWTLDKQQLGNQQVGVVAT-GNG-RIISLSLDGTLNFYELGHDE  330 (615)
T ss_dssp             EEEES--SSSEEEEEETTSEEEEEETTTT---EEEEEEECCTTCGGGCEEEEEEE-ETT-EEEEEETTSCEEEEETTEEE
T ss_pred             EEEEc--CCCEEEEEcCCCcEEEEECCCC---cEEEEEcCCCCcccCceeEEEeC-CCC-eEEEEECCCCEEEEECCCCc
Confidence            99997  5678899999999999999753   235566555    3567888885 554 69999999999999999988


Q ss_pred             cceeecCCCCeEEEEeecCCCEEEEccCCceEEEeec
Q 036314          307 PLSVIDSHKDKVLCADWWRGDSVISGGVDSKLCVSSG  343 (347)
Q Consensus       307 ~~~~~~~h~~~v~~~~~~~~~~l~s~s~D~~v~vw~~  343 (347)
                      ++..+.+|.+.|.+++| |.  |++++.|++|++|+.
T Consensus       331 ~~~~~~~~~~~v~~~~~-~~--l~~~~~dg~i~~w~~  364 (615)
T 1pgu_A          331 VLKTISGHNKGITALTV-NP--LISGSYDGRIMEWSS  364 (615)
T ss_dssp             EEEEECCCSSCEEEEET-TT--TEEEETTSCEEETTT
T ss_pred             EEEEEeCCCCCEEEEEe-cC--cEEECCCCeEEEEEc
Confidence            88888888888888888 65  777777777777763

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.2e-35  Score=276.00  Aligned_cols=239  Identities=10%  Similarity=0.075  Sum_probs=178.9

Q ss_pred             EEEEccCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCC------CCEEEEeeCCCcEEEEecCCCCCCC
Q 036314           82 TVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETS------GNMVCSGSWDCTISLWRTNDSDAAG  155 (347)
Q Consensus        82 ~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~------~~~l~sgs~Dg~I~iwd~~~~~~~~  155 (347)
                      .+++++.|++|+||++.++++.     .....++.+|.+.|.+++|+|+      +.+||+++.||+|+|||+.......
T Consensus       175 ~laS~s~D~tI~iWd~~~~~~~-----~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~  249 (524)
T 2j04_B          175 MFDKEKHSSCIQIFKMNTSTLH-----CVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDV  249 (524)
T ss_dssp             -------CEEEEEEEEETTTCC-----EEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSS
T ss_pred             hhccCCCCceEEEEEccCCCCC-----ceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccc
Confidence            3456778999999999765421     1122346678899999999987      5799999999999999997543210


Q ss_pred             ccceeeeccCCCccccccccccccccccCCccceEEEEeCCCCeEEEEecCCcEEEEECCCCcee-eeee-eCeeeEEEE
Q 036314          156 NQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWPQQETIYSASWDHSVRTWDVEMGKDL-SDIF-CGKALNCID  233 (347)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~-~~~~-~~~~~~~~~  233 (347)
                      ....              ........+.+|...|.+++|.++..|++|+.||+|++||++++... ..+. +...+.+++
T Consensus       250 ~~~~--------------~~~~p~~~l~~h~~~v~sv~~s~~~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~  315 (524)
T 2j04_B          250 HVFK--------------MCEKPSLTLSLADSLITTFDFLSPTTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVS  315 (524)
T ss_dssp             SEEE--------------CCCSCSEEECCTTTCEEEEEESSSSEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEE
T ss_pred             ccce--------------eecCceEEEEcCCCCEEEEEecCCCeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEE
Confidence            0000              00112346778999999999976678999999999999999876433 3333 345788884


Q ss_pred             -eeCCCC-cEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCC--CeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccce
Q 036314          234 -IGGEGS-ALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNS--WISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLS  309 (347)
Q Consensus       234 -~~~~~~-~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~--~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~  309 (347)
                       ..++++ .+||+++.|++|+|||++...   ....+.+|..  .|.+++|+|++.. |++++.|++|++||++++..+.
T Consensus       316 ~~~s~~g~~~laS~S~D~tvklWD~~~~~---~~~~~~~~~~~~~v~~v~fsp~~~~-l~s~~~d~tv~lwd~~~~~~~~  391 (524)
T 2j04_B          316 TAYSDFEDTVVSTVAVDGYFYIFNPKDIA---TTKTTVSRFRGSNLVPVVYCPQIYS-YIYSDGASSLRAVPSRAAFAVH  391 (524)
T ss_dssp             EECCTTSCCEEEEEETTSEEEEECGGGHH---HHCEEEEECSCCSCCCEEEETTTTE-EEEECSSSEEEEEETTCTTCCE
T ss_pred             EEcCCCCCeEEEEeccCCeEEEEECCCCC---cccccccccccCcccceEeCCCcCe-EEEeCCCCcEEEEECcccccce
Confidence             224444 789999999999999997532   2334555653  4789999999864 9999999999999999998888


Q ss_pred             eecCCCCeEEEEeecC-CCEEEEccCCceEEEeec
Q 036314          310 VIDSHKDKVLCADWWR-GDSVISGGVDSKLCVSSG  343 (347)
Q Consensus       310 ~~~~h~~~v~~~~~~~-~~~l~s~s~D~~v~vw~~  343 (347)
                      ++.+|.+.|++++|+| |..|||||.|++|+||+.
T Consensus       392 ~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~  426 (524)
T 2j04_B          392 PLVSRETTITAIGVSRLHPMVLAGSADGSLIITNA  426 (524)
T ss_dssp             EEEECSSCEEEEECCSSCCBCEEEETTTEEECCBS
T ss_pred             eeecCCCceEEEEeCCCCCeEEEEECCCEEEEEec
Confidence            8999999999999986 678999999999999974

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2e-33  Score=246.53  Aligned_cols=244  Identities=22%  Similarity=0.335  Sum_probs=205.7

Q ss_pred             eEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEE
Q 036314           55 VCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMV  134 (347)
Q Consensus        55 ~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l  134 (347)
                      +..+.+.+|.+.|.+++| +++.    .|++++.||+|++||+.+++         ....+..|...|.+++|+|+++++
T Consensus         9 ~~~~~l~~h~~~v~~~~~-~~~~----~l~s~~~dg~v~vw~~~~~~---------~~~~~~~~~~~v~~~~~~~~~~~l   74 (313)
T 3odt_A            9 QLSATLKGHDQDVRDVVA-VDDS----KVASVSRDGTVRLWSKDDQW---------LGTVVYTGQGFLNSVCYDSEKELL   74 (313)
T ss_dssp             EEEEEECCCSSCEEEEEE-EETT----EEEEEETTSEEEEEEESSSE---------EEEEEEECSSCEEEEEEETTTTEE
T ss_pred             HHHHHhhCCCCCcEEEEe-cCCC----EEEEEEcCCcEEEEECCCCE---------EEEEeecCCccEEEEEECCCCCEE
Confidence            567889999999999999 6443    69999999999999987653         345677899999999999999999


Q ss_pred             EEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEeCCCCeEEEEecCCcEEEEEC
Q 036314          135 CSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWPQQETIYSASWDHSVRTWDV  214 (347)
Q Consensus       135 ~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~dg~v~vwd~  214 (347)
                      ++++.|+.|++|++.+...                      ...+..+.+|...|.++.| +++.+++++.|+.|++|| 
T Consensus        75 ~~~~~dg~i~~~~~~~~~~----------------------~~~~~~~~~~~~~i~~~~~-~~~~l~~~~~d~~i~~~d-  130 (313)
T 3odt_A           75 LFGGKDTMINGVPLFATSG----------------------EDPLYTLIGHQGNVCSLSF-QDGVVISGSWDKTAKVWK-  130 (313)
T ss_dssp             EEEETTSCEEEEETTCCTT----------------------SCC-CEECCCSSCEEEEEE-ETTEEEEEETTSEEEEEE-
T ss_pred             EEecCCCeEEEEEeeecCC----------------------CCcccchhhcccCEEEEEe-cCCEEEEEeCCCCEEEEc-
Confidence            9999999999999875321                      1234567789999999998 678999999999999999 


Q ss_pred             CCCceeeeee-eCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecC-CCCCeeEEEeCCCCCeEEEEEe
Q 036314          215 EMGKDLSDIF-CGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSS-HNSWISACKWHNKSWFHLISAS  292 (347)
Q Consensus       215 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~-h~~~v~~v~~s~~~~~~l~s~s  292 (347)
                       .+.....+. ....+.++.+.+.++..+++++.|+.|++||..     .....+.. |...+.+++|+|++.  |++++
T Consensus       131 -~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~-----~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~  202 (313)
T 3odt_A          131 -EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQND-----KVIKTFSGIHNDVVRHLAVVDDGH--FISCS  202 (313)
T ss_dssp             -TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETT-----EEEEEECSSCSSCEEEEEEEETTE--EEEEE
T ss_pred             -CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecC-----ceEEEEeccCcccEEEEEEcCCCe--EEEcc
Confidence             444444444 345678888887677789999999999999943     23456666 899999999999983  99999


Q ss_pred             CCCcEEEEEcCCCccceeecCCCCeEEEEeecCCCEEEEccCCceEEEeecc
Q 036314          293 YDGKVMLWDLRTAWPLSVIDSHKDKVLCADWWRGDSVISGGVDSKLCVSSGV  344 (347)
Q Consensus       293 ~D~~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~D~~v~vw~~~  344 (347)
                      .|+.|++||+++++.+..+.+|.+.|.+++|+|..+|++++.|++|++|+..
T Consensus       203 ~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~v~iwd~~  254 (313)
T 3odt_A          203 NDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNGDIVSCGEDRTVRIWSKE  254 (313)
T ss_dssp             TTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSCEEEEETTSEEEEECTT
T ss_pred             CCCeEEEEECCchhhhhhhhcCCceEEEEEEecCCCEEEEecCCEEEEEECC
Confidence            9999999999999999999999999999999976689999999999999864

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=1.1e-33  Score=260.57  Aligned_cols=264  Identities=22%  Similarity=0.313  Sum_probs=211.6

Q ss_pred             EEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccC-ccccceeeeeeccccceEEEEEeCCCC-EEE
Q 036314           58 HILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNH-PKKIRSFKILRGHKASVHSIAAETSGN-MVC  135 (347)
Q Consensus        58 ~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~-~~~~~~~~~~~~h~~~V~~v~~s~~~~-~l~  135 (347)
                      ..+.+|.+.|++++|+|.+   ...|++++.||+|++|++........ ....++...+.+|...|.+++|+|++. +|+
T Consensus       122 ~~~~~h~~~v~~l~~~p~~---~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~  198 (430)
T 2xyi_A          122 EIKINHEGEVNRARYMPQN---ACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLL  198 (430)
T ss_dssp             EEEEEESSCCSEEEEETTE---EEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEE
T ss_pred             EEEEcCCCcEEEEEECCCC---CcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEE
Confidence            4567899999999999842   35799999999999999975211100 011345667889999999999999998 999


Q ss_pred             EeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEeC--CCCeEEEEecCCcEEEEE
Q 036314          136 SGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWP--QQETIYSASWDHSVRTWD  213 (347)
Q Consensus       136 sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~l~s~s~dg~v~vwd  213 (347)
                      +|+.||+|++|++.........                  ......+.+|...|.+++|.  .+..|++++.|+.|++||
T Consensus       199 s~~~dg~i~vwd~~~~~~~~~~------------------~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d  260 (430)
T 2xyi_A          199 SASDDHTICLWDINATPKEHRV------------------IDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWD  260 (430)
T ss_dssp             EECTTSCEEEEETTSCCBGGGE------------------EECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEE
T ss_pred             EEeCCCeEEEEeCCCCCCCCce------------------eccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEE
Confidence            9999999999998763211000                  01234566899999999995  456789999999999999


Q ss_pred             CCCC---ceeeeee-eCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEE
Q 036314          214 VEMG---KDLSDIF-CGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLI  289 (347)
Q Consensus       214 ~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~  289 (347)
                      ++++   ..+..+. +...+.+++|++.+..++++|+.|+.|++||++...  .++..+.+|...|.++.|+|++..+|+
T Consensus       261 ~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~--~~~~~~~~h~~~v~~i~~sp~~~~~l~  338 (430)
T 2xyi_A          261 TRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLK--LKLHSFESHKDEIFQVQWSPHNETILA  338 (430)
T ss_dssp             TTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT--SCSEEEECCSSCEEEEEECSSCTTEEE
T ss_pred             CCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCC--CCeEEeecCCCCEEEEEECCCCCCEEE
Confidence            9976   3444443 345789999998877789999999999999998633  346788899999999999999977899


Q ss_pred             EEeCCCcEEEEEcCC--------------CccceeecCCCCeEEEEeecC-CC-EEEEccCCceEEEeecc
Q 036314          290 SASYDGKVMLWDLRT--------------AWPLSVIDSHKDKVLCADWWR-GD-SVISGGVDSKLCVSSGV  344 (347)
Q Consensus       290 s~s~D~~i~lwd~~~--------------~~~~~~~~~h~~~v~~~~~~~-~~-~l~s~s~D~~v~vw~~~  344 (347)
                      +++.|++|+|||++.              .+.+..+.+|.+.|.++.|+| +. .|++++.|++|+||+..
T Consensus       339 s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~  409 (430)
T 2xyi_A          339 SSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMA  409 (430)
T ss_dssp             EEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEEC
T ss_pred             EEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcc
Confidence            999999999999987              244566789999999999986 55 79999999999999864

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-34  Score=266.51  Aligned_cols=277  Identities=14%  Similarity=0.141  Sum_probs=207.3

Q ss_pred             CCEEEEEecCCeEEEEcCCCeEEEEe-eccCCceEEEEEee-cCCCceEEEEEccCCCcEEEEeccccccccCcccccee
Q 036314           35 PGFILTGCYDNLGRVWKAGGVCTHIL-EGHCGAVSSVNIIK-SDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSF  112 (347)
Q Consensus        35 ~~~l~sg~~d~~i~iw~~~~~~~~~l-~~h~~~V~~v~~~~-~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~  112 (347)
                      +..+++++      .|+..+..+..+ .+|.+.|.+++|+| ++.    .|++|+.||+|++||+...+..   ...+..
T Consensus        39 ~~~~~~~~------~w~~~g~~~~~~~~~h~~~V~~~~~s~~~~~----~l~s~s~dg~v~vwd~~~~~~~---~~~~~~  105 (437)
T 3gre_A           39 QEIVRSPN------MGNLRGKLIATLMENEPNSITSSAVSPGETP----YLITGSDQGVIKIWNLKEIIVG---EVYSSS  105 (437)
T ss_dssp             CCCCCCCC------GGGCCCCEEEEECTTTTSCEEEEEEECSSSC----EEEEEETTSEEEEEEHHHHHTT---CCCSCS
T ss_pred             cccccccc------cccccceEEeeeccCCCCceEEEEECCCCCC----EEEEecCCceEEEeECcccccC---ccccee
Confidence            34555554      499889888888 89999999999999 543    6999999999999998752110   001122


Q ss_pred             eeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCcccccccccccccccc--C--Cccc
Q 036314          113 KILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLV--G--HTQC  188 (347)
Q Consensus       113 ~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--h~~~  188 (347)
                      ..+ +|..+|.+++|+|++++|++|+.|++|++||++.... +......             .+..+..+.  .  +...
T Consensus       106 ~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~-~~~~~~~-------------~~~~i~~~~~~~~~~~~~  170 (437)
T 3gre_A          106 LTY-DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQ-ESEVKFL-------------NCECIRKINLKNFGKNEY  170 (437)
T ss_dssp             EEE-ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEE-TTEEEEE-------------EEEEEEEEEGGGGSSCCC
T ss_pred             eec-cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccC-Cceeecc-------------ccceeEEEEccCcccccC
Confidence            222 5999999999999999999999999999999852100 0000000             001111111  1  4456


Q ss_pred             eEEEEe---CCCCeEEEEecCCcEEEEECCCCceeeeeee---CeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCC
Q 036314          189 VSSVVW---PQQETIYSASWDHSVRTWDVEMGKDLSDIFC---GKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTS  262 (347)
Q Consensus       189 v~~~~~---~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~  262 (347)
                      +.++.+   +++..|++++.|++|++||+++++.+..+..   ...+.+++++++ +.++++|+.|+.|++||++..   
T Consensus       171 ~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~-~~~l~s~~~dg~i~iwd~~~~---  246 (437)
T 3gre_A          171 AVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEE-CCVLILGTTRGIIDIWDIRFN---  246 (437)
T ss_dssp             EEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTT-SCEEEEEETTSCEEEEETTTT---
T ss_pred             ceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCC-CCEEEEEcCCCeEEEEEcCCc---
Confidence            666653   4677899999999999999999988877764   357899999765 568899999999999999852   


Q ss_pred             CCeEEec-CCCCCeeEEEeCC----CCCeEEEEEeCCCcEEEEEcCCCccceeecC------------------------
Q 036314          263 APVFQFS-SHNSWISACKWHN----KSWFHLISASYDGKVMLWDLRTAWPLSVIDS------------------------  313 (347)
Q Consensus       263 ~~~~~~~-~h~~~v~~v~~s~----~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~------------------------  313 (347)
                      ..+..+. +|...|.++.|+|    ++ .+|++|+.|++|++||+++++.+..+.+                        
T Consensus       247 ~~~~~~~~~~~~~v~~~~~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  325 (437)
T 3gre_A          247 VLIRSWSFGDHAPITHVEVCQFYGKNS-VIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCG  325 (437)
T ss_dssp             EEEEEEBCTTCEEEEEEEECTTTCTTE-EEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCC
T ss_pred             cEEEEEecCCCCceEEEEeccccCCCc-cEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecc
Confidence            3455554 7788999996665    44 5799999999999999998876665553                        


Q ss_pred             --CCCeEEEEeecCCCEEEEccCCceEEEeecc
Q 036314          314 --HKDKVLCADWWRGDSVISGGVDSKLCVSSGV  344 (347)
Q Consensus       314 --h~~~v~~~~~~~~~~l~s~s~D~~v~vw~~~  344 (347)
                        |.+.|++++|+++++|++|+.|++|++|+..
T Consensus       326 ~~~~~~v~~l~~~~~~~l~s~~~d~~i~~wd~~  358 (437)
T 3gre_A          326 IRSLNALSTISVSNDKILLTDEATSSIVMFSLN  358 (437)
T ss_dssp             CCSGGGGCCEEEETTEEEEEEGGGTEEEEEETT
T ss_pred             cccCCceEEEEECCceEEEecCCCCeEEEEECC
Confidence              5566888899877789999999999999864

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=2.5e-34  Score=261.75  Aligned_cols=273  Identities=16%  Similarity=0.135  Sum_probs=186.9

Q ss_pred             EEEEEecCCeEEEEcCC--------CeEE--EEeeccCCceEEEEEeecC----------------CCceEEEEEccCCC
Q 036314           37 FILTGCYDNLGRVWKAG--------GVCT--HILEGHCGAVSSVNIIKSD----------------GLKYVTVATASKDQ   90 (347)
Q Consensus        37 ~l~sg~~d~~i~iw~~~--------~~~~--~~l~~h~~~V~~v~~~~~~----------------~~~~~~l~s~s~Dg   90 (347)
                      .|+++|.|+.|++|+..        +...  .....|...+..+.+.+..                ......|++++.|+
T Consensus        32 ~l~a~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~~~d~  111 (393)
T 4gq1_A           32 NLLAIGHDTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHDGDGNVNSSPVYSLFLACVCQDN  111 (393)
T ss_dssp             TEEEEEESSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC----------CCEEEEEEEEEETTS
T ss_pred             CEEEEECCCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccccCCCcceeecCCCCCEEEEEeCCC
Confidence            35555568899999641        1111  1122344555555554211                11345799999999


Q ss_pred             cEEEEeccccccccCccccceeeeeeccccceEEEEEeC--------CCCEEEEeeCCCcEEEEecCCCCCCCccceeee
Q 036314           91 TLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAET--------SGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKK  162 (347)
Q Consensus        91 ~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~--------~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~  162 (347)
                      +||+||+..++..    ....+..+.+|++.|++++|+|        |+++|+|||.|++|+|||+.+.           
T Consensus       112 ~v~lw~~~~~~~~----~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~-----------  176 (393)
T 4gq1_A          112 TVRLIITKNETII----TQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDE-----------  176 (393)
T ss_dssp             CEEEEEEETTEEE----EEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETT-----------
T ss_pred             cEEEEECCCCccc----eeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCC-----------
Confidence            9999999876432    1224456789999999999997        8899999999999999998653           


Q ss_pred             ccCCCccccccccccccccccCCccceEEEEe-CCC-CeEEEEecCCcEEEEECCCCceeeeee----------------
Q 036314          163 RKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW-PQQ-ETIYSASWDHSVRTWDVEMGKDLSDIF----------------  224 (347)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~-~~l~s~s~dg~v~vwd~~~~~~~~~~~----------------  224 (347)
                                    ..+..+.+|...+.+++| |++ .+|++++.|++|++||+++++......                
T Consensus       177 --------------~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~  242 (393)
T 4gq1_A          177 --------------GPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTL  242 (393)
T ss_dssp             --------------EEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESG
T ss_pred             --------------ceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccc
Confidence                          223455678889999998 455 479999999999999998875432211                


Q ss_pred             ----------eCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCC-------------------e
Q 036314          225 ----------CGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSW-------------------I  275 (347)
Q Consensus       225 ----------~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~-------------------v  275 (347)
                                ....+.++.+.++++..+++++.|+++++||++....   ...+..|...                   +
T Consensus       243 ~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (393)
T 4gq1_A          243 PLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANND---YNEISDSTMKLGPKNLLPNVQGISLFPSLL  319 (393)
T ss_dssp             GGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC----------------------CCSCSEEEECSSCCSS
T ss_pred             cceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCC---CceEeeecCccccEEEccccccccccCcce
Confidence                      1123566777777778899999999999999864321   1222223222                   2


Q ss_pred             eEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecCCCCeEEEEeecC-CCEEEEccCCceEEEee
Q 036314          276 SACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKVLCADWWR-GDSVISGGVDSKLCVSS  342 (347)
Q Consensus       276 ~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~l~s~s~D~~v~vw~  342 (347)
                      ..+.+.+.+..++++|+.|++|+|||+++++....+.+|...|++++|+| |++||+++.||. .+|+
T Consensus       320 ~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~Gv-~lvr  386 (393)
T 4gq1_A          320 GACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGSV-LLTR  386 (393)
T ss_dssp             CCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSEE-EEEE
T ss_pred             eEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCe-EEEE
Confidence            22333333456788899999999999999988888888999999999985 788999987775 4443

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=4.8e-34  Score=263.30  Aligned_cols=252  Identities=14%  Similarity=0.131  Sum_probs=188.4

Q ss_pred             EEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeC-CCCEEEE
Q 036314           58 HILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAET-SGNMVCS  136 (347)
Q Consensus        58 ~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~-~~~~l~s  136 (347)
                      ....+|...|++|+|+|..+   ..||+|+.||+|++||+..++.       .....+.+|.++|++|+|+| ++++|+|
T Consensus       113 ~~~~~~~~~V~~l~~~P~~~---~~lasGs~dg~i~lWd~~~~~~-------~~~~~~~gH~~~V~~l~f~p~~~~~l~s  182 (435)
T 4e54_B          113 QKAAPFDRRATSLAWHPTHP---STVAVGSKGGDIMLWNFGIKDK-------PTFIKGIGAGGSITGLKFNPLNTNQFYA  182 (435)
T ss_dssp             CEEEECSSCEEEEEECSSCT---TCEEEEETTSCEEEECSSCCSC-------CEEECCCSSSCCCCEEEECSSCTTEEEE
T ss_pred             ccCCCCCCCEEEEEEeCCCC---CEEEEEeCCCEEEEEECCCCCc-------eeEEEccCCCCCEEEEEEeCCCCCEEEE
Confidence            34668999999999998544   2699999999999999976532       23345678999999999997 6899999


Q ss_pred             eeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEe-CCCCeEEEEecCCcEEEEECC
Q 036314          137 GSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVE  215 (347)
Q Consensus       137 gs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~l~s~s~dg~v~vwd~~  215 (347)
                      ||.|++|++||++....                       ........+...+.++.| +++.+|++++.||+|++||++
T Consensus       183 ~s~D~~v~iwd~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~  239 (435)
T 4e54_B          183 SSMEGTTRLQDFKGNIL-----------------------RVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD  239 (435)
T ss_dssp             ECSSSCEEEEETTSCEE-----------------------EEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS
T ss_pred             EeCCCEEEEeeccCCce-----------------------eEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC
Confidence            99999999999864210                       001111223345667776 678899999999999999986


Q ss_pred             CCceeeeee-eCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCC
Q 036314          216 MGKDLSDIF-CGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYD  294 (347)
Q Consensus       216 ~~~~~~~~~-~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D  294 (347)
                      . +.+..+. +...+.+++|+|.+..++++++.|+.|++||++............+|...|.+++|+|++. +|++++.|
T Consensus       240 ~-~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~-~l~s~~~D  317 (435)
T 4e54_B          240 G-KELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGA-RLLTTDQK  317 (435)
T ss_dssp             S-CBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSS-EEEEEESS
T ss_pred             c-ceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCC-eeEEEcCC
Confidence            5 4444444 3457899999988888999999999999999986543333445568999999999999986 59999999


Q ss_pred             CcEEEEEcCCCccceeecCCCCe------EEEEeecC-CCEEEE------------ccCCceEEEeecc
Q 036314          295 GKVMLWDLRTAWPLSVIDSHKDK------VLCADWWR-GDSVIS------------GGVDSKLCVSSGV  344 (347)
Q Consensus       295 ~~i~lwd~~~~~~~~~~~~h~~~------v~~~~~~~-~~~l~s------------~s~D~~v~vw~~~  344 (347)
                      ++|+|||++++.....+..|...      +..+.|++ +..+++            +..+++|++|+..
T Consensus       318 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~  386 (435)
T 4e54_B          318 SEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGN  386 (435)
T ss_dssp             SCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSS
T ss_pred             CEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECC
Confidence            99999999998877766555421      22334432 333333            3345689999865

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.4e-33  Score=255.88  Aligned_cols=248  Identities=17%  Similarity=0.298  Sum_probs=202.0

Q ss_pred             CcCCceeeccCC-CCCEEEEEecCCeEEEEcCC-CeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccc
Q 036314           22 LHDDWVSAVDGS-NPGFILTGCYDNLGRVWKAG-GVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDA   99 (347)
Q Consensus        22 ~h~~~v~~~~~~-~~~~l~sg~~d~~i~iw~~~-~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~   99 (347)
                      .|...|++++++ ++.+|++|+.||.|++||.. +..+..+.+|...|.++.|.+      ..|++++.||+|++||+..
T Consensus       132 ~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~------~~l~~~~~dg~i~i~d~~~  205 (401)
T 4aez_A          132 DESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWNR------HVLSSGSRSGAIHHHDVRI  205 (401)
T ss_dssp             CTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEET------TEEEEEETTSEEEEEETTS
T ss_pred             CCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEECC------CEEEEEcCCCCEEEEeccc
Confidence            488999999998 56799999999999999975 678888999999999999943      2699999999999999874


Q ss_pred             cccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCcccccccccccc
Q 036314          100 EELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAI  179 (347)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (347)
                      ..        .....+.+|...|.+++|+|++++|++|+.|++|++||+.+.                         ...
T Consensus       206 ~~--------~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~-------------------------~~~  252 (401)
T 4aez_A          206 AN--------HQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSS-------------------------IPK  252 (401)
T ss_dssp             SS--------CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCS-------------------------SEE
T ss_pred             Cc--------ceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCC-------------------------Ccc
Confidence            32        245678899999999999999999999999999999998753                         234


Q ss_pred             ccccCCccceEEEEeC-CCC-eEEEEe--cCCcEEEEECCCCceeeeeeeCeeeEEEEeeCCCCcEEEE--ecCCCcEEE
Q 036314          180 STLVGHTQCVSSVVWP-QQE-TIYSAS--WDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEGSALIAA--GGSDPILRI  253 (347)
Q Consensus       180 ~~~~~h~~~v~~~~~~-~~~-~l~s~s--~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~--~~~d~~i~i  253 (347)
                      ..+.+|...|.+++|. ++. .+++++  .|+.|++||+++++.+..+.....+.++++++++. .+++  |+.|+.|++
T Consensus       253 ~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~g~~dg~i~v  331 (401)
T 4aez_A          253 FTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSK-EIMSTHGFPDNNLSI  331 (401)
T ss_dssp             EEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECSSCEEEEEECSSSS-EEEEEECTTTCEEEE
T ss_pred             EEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEECCCCC-eEEEEeecCCCcEEE
Confidence            4567788999999984 454 556654  79999999999999888887777899999987655 5555  558999999


Q ss_pred             EeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceee
Q 036314          254 WDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVI  311 (347)
Q Consensus       254 wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~  311 (347)
                      ||+.... ......+.+|...|.+++|+|++. +|++++.||.|++||+.+++.+...
T Consensus       332 ~~~~~~~-~~~~~~~~~h~~~v~~~~~s~dg~-~l~s~~~dg~i~iw~~~~~~~~~~~  387 (401)
T 4aez_A          332 WSYSSSG-LTKQVDIPAHDTRVLYSALSPDGR-ILSTAASDENLKFWRVYDGDHVKRP  387 (401)
T ss_dssp             EEEETTE-EEEEEEEECCSSCCCEEEECTTSS-EEEEECTTSEEEEEECCC-------
T ss_pred             EecCCcc-ceeEEEecCCCCCEEEEEECCCCC-EEEEEeCCCcEEEEECCCCcccccc
Confidence            9987532 233456789999999999999986 5999999999999999988766554

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=4.7e-34  Score=255.87  Aligned_cols=269  Identities=20%  Similarity=0.276  Sum_probs=198.3

Q ss_pred             CcCCceeeccCC-C----CCEEEEEecCCeEEEEcCC-CeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEE
Q 036314           22 LHDDWVSAVDGS-N----PGFILTGCYDNLGRVWKAG-GVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLW   95 (347)
Q Consensus        22 ~h~~~v~~~~~~-~----~~~l~sg~~d~~i~iw~~~-~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~w   95 (347)
                      .|...|.+++++ +    +.+|++|+.||+|++||.. +..+..+.+|...|.++.|+|.++   ..|++++.||+|++|
T Consensus        67 ~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~---~~l~s~~~dg~i~iw  143 (366)
T 3k26_A           67 DADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDP---NLLLSVSKDHALRLW  143 (366)
T ss_dssp             CTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCT---TEEEEEETTSCEEEE
T ss_pred             CCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCC---CEEEEEeCCCeEEEE
Confidence            377889999987 3    3589999999999999975 678888999999999999998333   269999999999999


Q ss_pred             eccccccccCccccceeeee---eccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccce---eeeccCCCcc
Q 036314           96 KFDAEELVNHPKKIRSFKIL---RGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVS---IKKRKGNNQV  169 (347)
Q Consensus        96 d~~~~~~~~~~~~~~~~~~~---~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~---~~~~~~~~~~  169 (347)
                      |+..++         ....+   .+|...|.+++|+|++++|++++.|+.|++||+.+.........   ..........
T Consensus       144 d~~~~~---------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  214 (366)
T 3k26_A          144 NIQTDT---------LVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPF  214 (366)
T ss_dssp             ETTTTE---------EEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCC
T ss_pred             EeecCe---------EEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccc
Confidence            997654         23334   68999999999999999999999999999999875421100000   0000000000


Q ss_pred             ccccccccccccccCCccceEEEEeCCCCeEEEEecCCcEEEEECCCCce--------------eeeeee-CeeeEEEEe
Q 036314          170 EEPQLEGEAISTLVGHTQCVSSVVWPQQETIYSASWDHSVRTWDVEMGKD--------------LSDIFC-GKALNCIDI  234 (347)
Q Consensus       170 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~dg~v~vwd~~~~~~--------------~~~~~~-~~~~~~~~~  234 (347)
                      ..............+|...|.++.|. ++.+++++.|+.|++||++++..              +..+.. ...+.++++
T Consensus       215 ~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  293 (366)
T 3k26_A          215 ISQKIHFPDFSTRDIHRNYVDCVRWL-GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRF  293 (366)
T ss_dssp             CCEEECCCSEEECSSCSSCCCEEEEE-TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCC
T ss_pred             cceeeccCccccccCCcceEEEEEEc-CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEE
Confidence            00000111233455689999999987 78999999999999999987644              222222 235667777


Q ss_pred             eCC-CCcEEEEecCCCcEEEEeCCCCCCCC-CeEEecCC--CCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCC
Q 036314          235 GGE-GSALIAAGGSDPILRIWDPRKPGTSA-PVFQFSSH--NSWISACKWHNKSWFHLISASYDGKVMLWDLRT  304 (347)
Q Consensus       235 ~~~-~~~~la~~~~d~~i~iwd~~~~~~~~-~~~~~~~h--~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~  304 (347)
                      +++ ++.+|++++.|+.|++||++...... ....+.+|  ...|.+++|+|++. +|++++.||.|++||+.+
T Consensus       294 s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~dg~i~iwd~~~  366 (366)
T 3k26_A          294 SMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSS-ILIAVCDDASIWRWDRLR  366 (366)
T ss_dssp             EECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSS-EEEEEETTSEEEEEEC--
T ss_pred             cCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCC-eEEEEeCCCEEEEEEecC
Confidence            765 15788999999999999997543211 33467777  78999999999986 599999999999999853

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2e-34  Score=260.26  Aligned_cols=248  Identities=14%  Similarity=0.153  Sum_probs=191.2

Q ss_pred             EeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEee
Q 036314           59 ILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGS  138 (347)
Q Consensus        59 ~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs  138 (347)
                      .+..|.+.|.+++|+|++    .+|++++.|++|++||+.++.       .+....+.+|..+|.+++|+|++++|++++
T Consensus         6 ~~~~~~~~v~~~~~s~~g----~~l~~~~~d~~i~iw~~~~~~-------~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s   74 (377)
T 3dwl_C            6 VLHILPKPSYEHAFNSQR----TEFVTTTATNQVELYEQDGNG-------WKHARTFSDHDKIVTCVDWAPKSNRIVTCS   74 (377)
T ss_dssp             EEEECSSCCSCCEECSSS----SEEECCCSSSCBCEEEEETTE-------EEECCCBCCCSSCEEEEEECTTTCCEEEEE
T ss_pred             eEecCCCcEEEEEECCCC----CEEEEecCCCEEEEEEccCCc-------eEEEEEEecCCceEEEEEEeCCCCEEEEEe
Confidence            344577889999999954    379999999999999997652       124456789999999999999999999999


Q ss_pred             CCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEe-CCCCeEEEEecCCcEEEEECCCC
Q 036314          139 WDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMG  217 (347)
Q Consensus       139 ~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~l~s~s~dg~v~vwd~~~~  217 (347)
                      .|++|++||+.+...                      ......+.+|...|.++.| |+++.|++++.|++|++||++.+
T Consensus        75 ~d~~v~vwd~~~~~~----------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~  132 (377)
T 3dwl_C           75 QDRNAYVYEKRPDGT----------------------WKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQE  132 (377)
T ss_dssp             TTSSEEEC------C----------------------CCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC---
T ss_pred             CCCeEEEEEcCCCCc----------------------eeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCc
Confidence            999999999876420                      0123456679999999998 57788999999999999999887


Q ss_pred             ce---eeeee--eCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCC---------------CCCCeEEecCCCCCeeE
Q 036314          218 KD---LSDIF--CGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPG---------------TSAPVFQFSSHNSWISA  277 (347)
Q Consensus       218 ~~---~~~~~--~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~---------------~~~~~~~~~~h~~~v~~  277 (347)
                      +.   ...+.  +...+.+++++++ +.+|++++.|+.|++||++...               .......+ +|...|.+
T Consensus       133 ~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~  210 (377)
T 3dwl_C          133 NDWWVSKHLKRPLRSTILSLDWHPN-NVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHA  210 (377)
T ss_dssp             --CCCCEEECSSCCSCEEEEEECTT-SSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEE
T ss_pred             ccceeeeEeecccCCCeEEEEEcCC-CCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEE
Confidence            63   44444  3457899999765 5688999999999999985211               01123445 89999999


Q ss_pred             EEeCCCCCeEEEEEeCCCcEEEEEcCCCcc----ceeecCCCCeEEEEeecC-CCEEEEccCCceEEEeec
Q 036314          278 CKWHNKSWFHLISASYDGKVMLWDLRTAWP----LSVIDSHKDKVLCADWWR-GDSVISGGVDSKLCVSSG  343 (347)
Q Consensus       278 v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~----~~~~~~h~~~v~~~~~~~-~~~l~s~s~D~~v~vw~~  343 (347)
                      ++|+|++. +|++++.|++|++||+++++.    +..+.+|...|.+++|+| +++|++++.|+.+ +|..
T Consensus       211 ~~~sp~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~  279 (377)
T 3dwl_C          211 VGFSPSGN-ALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQG  279 (377)
T ss_dssp             EEECTTSS-CEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECC
T ss_pred             EEECCCCC-EEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEe
Confidence            99999986 599999999999999999887    788899999999999985 6678888877766 5543

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.9e-34  Score=264.12  Aligned_cols=262  Identities=11%  Similarity=0.048  Sum_probs=200.6

Q ss_pred             CcCCceeeccCC-CCCEEEEEecCCeEEEEcCCCeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEecccc
Q 036314           22 LHDDWVSAVDGS-NPGFILTGCYDNLGRVWKAGGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAE  100 (347)
Q Consensus        22 ~h~~~v~~~~~~-~~~~l~sg~~d~~i~iw~~~~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~  100 (347)
                      .-..+|.+++++ +|+++||+|.|++||  |.  +..+.+.+|.+.|.+++|+|++           .++++++|+.+..
T Consensus        13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~--~~~~~l~gh~~~v~~V~FsPdg-----------~~~~~~~~~~~~~   77 (588)
T 2j04_A           13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QP--KYAKDINCNSKNLFHVKEFPLE-----------FENKLDFELAQQN   77 (588)
T ss_dssp             CCSSSSCCEEECTTSCEEEECSSSEEEE--EE--CCCSCCSSBGGGTEEEEEECCC-----------CCCTTTTSCCCSS
T ss_pred             HhhccEEEEEECCCCCEEEEEcCCceee--cc--cccceecCCCccEEEEEECCCC-----------CcceEEEEeCCCc
Confidence            456899999998 566999999999999  63  2334558999999999999942           4666666654322


Q ss_pred             ccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccc
Q 036314          101 ELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAIS  180 (347)
Q Consensus       101 ~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (347)
                      ..          ..+ .|...|.+++|+|+|++||+++.||+|++|+.+.                           .+.
T Consensus        78 ~~----------~~~-~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~---------------------------~l~  119 (588)
T 2j04_A           78 GL----------LNS-QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK---------------------------MLT  119 (588)
T ss_dssp             CS----------STT-SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE---------------------------EEE
T ss_pred             eE----------eec-CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc---------------------------eee
Confidence            11          111 4688899999999999999999999999998532                           233


Q ss_pred             cccCCcc-----ceEEEEe-CCCCeEEEEecCCcEEEEECCCCce-------eeeeee-----CeeeEEEEeeCCCCcEE
Q 036314          181 TLVGHTQ-----CVSSVVW-PQQETIYSASWDHSVRTWDVEMGKD-------LSDIFC-----GKALNCIDIGGEGSALI  242 (347)
Q Consensus       181 ~~~~h~~-----~v~~~~~-~~~~~l~s~s~dg~v~vwd~~~~~~-------~~~~~~-----~~~~~~~~~~~~~~~~l  242 (347)
                      .+. |..     .+.+++| |++++|++++.||+|++||+.++..       +..+..     ...+.+++|+|++   +
T Consensus       120 ~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg---L  195 (588)
T 2j04_A          120 NLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV---L  195 (588)
T ss_dssp             ECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE---E
T ss_pred             ecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc---E
Confidence            344 444     4899999 6889999999999999999988752       344432     2368999998764   6


Q ss_pred             EEecCCCcEEEEeCCCCCCCCCeEEe-cCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecCCCCeEEEE
Q 036314          243 AAGGSDPILRIWDPRKPGTSAPVFQF-SSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKVLCA  321 (347)
Q Consensus       243 a~~~~d~~i~iwd~~~~~~~~~~~~~-~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h~~~v~~~  321 (347)
                      ++++.|+.|++||+..........++ .+|...|.+++|+  + ..||+++ |++|++||+.+++......+|.+.|+.+
T Consensus       196 aass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g-~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~v  271 (588)
T 2j04_A          196 VAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--D-YKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHII  271 (588)
T ss_dssp             EEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--T-TEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEE
T ss_pred             EEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--C-CEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEE
Confidence            77888999999998753311123456 4788999999999  3 3588887 6999999999876534334899999999


Q ss_pred             ee--cCC-CEEEEccCCceEEEeeccc
Q 036314          322 DW--WRG-DSVISGGVDSKLCVSSGVS  345 (347)
Q Consensus       322 ~~--~~~-~~l~s~s~D~~v~vw~~~~  345 (347)
                      .|  +++ ..|++++.||+ +||...+
T Consensus       272 a~~~s~d~~~La~a~edG~-klw~~d~  297 (588)
T 2j04_A          272 PLNHEKESTILLMSNKTSY-KVLLEDE  297 (588)
T ss_dssp             EETTCSSCEEEEECSSCEE-EEEESSS
T ss_pred             EeeeCCCCCEEEEEcCCCC-EEEeecc
Confidence            99  764 57999999999 9998653

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=3e-32  Score=239.68  Aligned_cols=248  Identities=19%  Similarity=0.283  Sum_probs=200.3

Q ss_pred             CCCcCCceeeccCC-CCCEEEEEecCCeEEEEcCC-CeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEec
Q 036314           20 PSLHDDWVSAVDGS-NPGFILTGCYDNLGRVWKAG-GVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKF   97 (347)
Q Consensus        20 ~~~h~~~v~~~~~~-~~~~l~sg~~d~~i~iw~~~-~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~   97 (347)
                      ..+|...|++++++ ++++|||||.|++|++|+.. +++++.+.+|...+.++.+.+      ..+++++.++.+++|+.
T Consensus        63 ~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~------~~l~s~~~~~~~~~~~~  136 (318)
T 4ggc_A           63 MEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNS------YILSSGSRSGHIHHHDV  136 (318)
T ss_dssp             CCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEET------TEEEEEETTSEEEEEET
T ss_pred             ecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecCC------CEEEEEecCCceEeeec
Confidence            34788999999998 56799999999999999975 788899999999988876643      26899999999999997


Q ss_pred             cccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCcccccccccc
Q 036314           98 DAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGE  177 (347)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (347)
                      ....        .....+.+|...+..++++++++++++++.|++|++||+.++....                     .
T Consensus       137 ~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~---------------------~  187 (318)
T 4ggc_A          137 RVAE--------HHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGW---------------------V  187 (318)
T ss_dssp             TSSS--------CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBS---------------------C
T ss_pred             CCCc--------eeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccc---------------------c
Confidence            6542        3456788999999999999999999999999999999987643211                     1


Q ss_pred             ccccccCCccceEEEEe-CCCC-e--EEEEecCCcEEEEECCCCceeeeeeeCeeeEEEEeeCCCCcEEEE-ecCCCcEE
Q 036314          178 AISTLVGHTQCVSSVVW-PQQE-T--IYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEGSALIAA-GGSDPILR  252 (347)
Q Consensus       178 ~~~~~~~h~~~v~~~~~-~~~~-~--l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~-~~~d~~i~  252 (347)
                      .......|...|..+.+ +.+. .  +++++.+++|++||.+.............+..+.+.+.+..++++ |+.|+.|+
T Consensus       188 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~  267 (318)
T 4ggc_A          188 PLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLV  267 (318)
T ss_dssp             CSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEE
T ss_pred             ceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceeeeeeeeecccccceEEEEEcCCCEEE
Confidence            12234456777888887 3333 2  356788899999999988777666666678888888777665543 45899999


Q ss_pred             EEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCc
Q 036314          253 IWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAW  306 (347)
Q Consensus       253 iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~  306 (347)
                      +||++..   .++..+.+|.+.|.+++|+|++. +|||||.|++|+|||+....
T Consensus       268 iwd~~~~---~~~~~l~gH~~~V~~l~~spdg~-~l~S~s~D~~v~iWd~~~~d  317 (318)
T 4ggc_A          268 IWKYPTM---AKVAELKGHTSRVLSLTMSPDGA-TVASAAADETLRLWRCFELD  317 (318)
T ss_dssp             EEETTTC---CEEEEECCCSSCEEEEEECTTSS-CEEEEETTTEEEEECCSCCC
T ss_pred             EEECCCC---cEEEEEcCCCCCEEEEEEcCCCC-EEEEEecCCeEEEEECCCCC
Confidence            9999753   45788999999999999999986 59999999999999997654

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=4.1e-33  Score=253.16  Aligned_cols=254  Identities=17%  Similarity=0.229  Sum_probs=206.6

Q ss_pred             EEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCC----C
Q 036314           56 CTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETS----G  131 (347)
Q Consensus        56 ~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~----~  131 (347)
                      ..+.+.+|.+.|.+++|+|      ..|++++.||+|++|++..++..   ........+.+|..+|.+++|+++    +
T Consensus         8 ~~~~~~~h~~~i~~~~~~~------~~l~s~~~dg~i~iw~~~~~~~~---~~~~~~~~~~~h~~~v~~~~~~~~~~~~g   78 (397)
T 1sq9_A            8 TANAGKAHDADIFSVSACN------SFTVSCSGDGYLKVWDNKLLDNE---NPKDKSYSHFVHKSGLHHVDVLQAIERDA   78 (397)
T ss_dssp             EEEESSCSSSCEEEEEECS------SEEEEEETTSEEEEEESBCCTTC---CGGGGEEEEECCTTCEEEEEEEEEEETTT
T ss_pred             hhhhhhhhhcCeEEEEecC------CeEEEEcCCCEEEEEECCCcccc---cCCCcceEEecCCCcEEEEEEecccccCC
Confidence            4567889999999999987      26999999999999999876421   112345677899999999999999    9


Q ss_pred             ---CEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCC-----ccceEEEEeC-----CCC
Q 036314          132 ---NMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGH-----TQCVSSVVWP-----QQE  198 (347)
Q Consensus       132 ---~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-----~~~v~~~~~~-----~~~  198 (347)
                         ++|++++.|++|++|++.+.....                    ...+..+..|     ...|.++.|.     +++
T Consensus        79 ~~~~~l~s~~~dg~i~iw~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  138 (397)
T 1sq9_A           79 FELCLVATTSFSGDLLFYRITREDETK--------------------KVIFEKLDLLDSDMKKHSFWALKWGASNDRLLS  138 (397)
T ss_dssp             EEEEEEEEEETTSCEEEEEEEECTTTC--------------------CEEEEEECCSCTTGGGSCEEEEEEECCC----C
T ss_pred             ccccEEEEEcCCCCEEEEEccCCcccc--------------------cccceeecccccccCCCcEEEEEEeeccCCCCc
Confidence               999999999999999987542100                    0013455666     5889999875     577


Q ss_pred             e-EEEEecCCcEEEEECCC------Cceee-----eeee--------CeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCC
Q 036314          199 T-IYSASWDHSVRTWDVEM------GKDLS-----DIFC--------GKALNCIDIGGEGSALIAAGGSDPILRIWDPRK  258 (347)
Q Consensus       199 ~-l~s~s~dg~v~vwd~~~------~~~~~-----~~~~--------~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~  258 (347)
                      . |++++.||.|++||++.      +..+.     .+..        ...+.++++++++  ++++++.|+.|++||++.
T Consensus       139 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~dg~i~i~d~~~  216 (397)
T 1sq9_A          139 HRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELST  216 (397)
T ss_dssp             EEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTT
T ss_pred             eEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc--eEEEEeCCCcEEEEECCC
Confidence            8 99999999999999988      65554     4432        4568899997765  889999999999999975


Q ss_pred             CCCCCCeEEecC---C---CCCeeEEEeCCCCCeEEEEEeCC---CcEEEEEcCCCccceeecC-------------CCC
Q 036314          259 PGTSAPVFQFSS---H---NSWISACKWHNKSWFHLISASYD---GKVMLWDLRTAWPLSVIDS-------------HKD  316 (347)
Q Consensus       259 ~~~~~~~~~~~~---h---~~~v~~v~~s~~~~~~l~s~s~D---~~i~lwd~~~~~~~~~~~~-------------h~~  316 (347)
                      .   .++..+..   |   ...|.+++|+|++. +|++++.|   +.|++||+++++.+..+.+             |.+
T Consensus       217 ~---~~~~~~~~~~~h~~~~~~i~~i~~~~~~~-~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (397)
T 1sq9_A          217 L---RPLYNFESQHSMINNSNSIRSVKFSPQGS-LLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSS  292 (397)
T ss_dssp             T---EEEEEEECCC---CCCCCEEEEEECSSTT-EEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSS
T ss_pred             C---ceeEEEeccccccccCCccceEEECCCCC-EEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCC
Confidence            2   34677777   8   99999999999986 59999999   9999999999998899988             999


Q ss_pred             eEEEEeecC-CCEEEEccCCceEEEeecc
Q 036314          317 KVLCADWWR-GDSVISGGVDSKLCVSSGV  344 (347)
Q Consensus       317 ~v~~~~~~~-~~~l~s~s~D~~v~vw~~~  344 (347)
                      .|.++.|+| +++|++++.|++|+||+..
T Consensus       293 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  321 (397)
T 1sq9_A          293 WVMSLSFNDSGETLCSAGWDGKLRFWDVK  321 (397)
T ss_dssp             CEEEEEECSSSSEEEEEETTSEEEEEETT
T ss_pred             cEEEEEECCCCCEEEEEeCCCeEEEEEcC
Confidence            999999985 7789999999999999864

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=9.4e-33  Score=250.02  Aligned_cols=253  Identities=13%  Similarity=0.138  Sum_probs=197.9

Q ss_pred             eEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeC-CCCE
Q 036314           55 VCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAET-SGNM  133 (347)
Q Consensus        55 ~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~-~~~~  133 (347)
                      ...+.+.+|.+.|.+++|+|++.   ..|++|+.||+|++||+.+++..       ....+.+|...|.+++|+| ++++
T Consensus        64 ~~~~~~~~h~~~v~~~~~~~~~~---~~l~s~~~dg~i~iwd~~~~~~~-------~~~~~~~h~~~v~~~~~~~~~~~~  133 (383)
T 3ei3_B           64 KLHRTASPFDRRVTSLEWHPTHP---TTVAVGSKGGDIILWDYDVQNKT-------SFIQGMGPGDAITGMKFNQFNTNQ  133 (383)
T ss_dssp             EEEEEECCCSSCEEEEEECSSCT---TEEEEEEBTSCEEEEETTSTTCE-------EEECCCSTTCBEEEEEEETTEEEE
T ss_pred             ceEEeccCCCCCEEEEEECCCCC---CEEEEEcCCCeEEEEeCCCcccc-------eeeecCCcCCceeEEEeCCCCCCE
Confidence            45678899999999999999642   37999999999999999865421       2222347999999999999 6799


Q ss_pred             EEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEe-CCCCeEEEEecCCcEEEE
Q 036314          134 VCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTW  212 (347)
Q Consensus       134 l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~l~s~s~dg~v~vw  212 (347)
                      |++++.|++|++||+.....                       ..+....+|...|.+++| ++++.|++++.|+.|++|
T Consensus       134 l~s~~~d~~i~iwd~~~~~~-----------------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~  190 (383)
T 3ei3_B          134 LFVSSIRGATTLRDFSGSVI-----------------------QVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLL  190 (383)
T ss_dssp             EEEEETTTEEEEEETTSCEE-----------------------EEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEE
T ss_pred             EEEEeCCCEEEEEECCCCce-----------------------EEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEE
Confidence            99999999999999874210                       011122345578999998 678899999999999999


Q ss_pred             ECCCCceeeeeee-CeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCC-CeEEecCCCCCeeEEEeCC-CCCeEEE
Q 036314          213 DVEMGKDLSDIFC-GKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSA-PVFQFSSHNSWISACKWHN-KSWFHLI  289 (347)
Q Consensus       213 d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~-~~~~~~~h~~~v~~v~~s~-~~~~~l~  289 (347)
                      |++ ++.+..+.. ...+.++++++++..++++++.|+.|++||++...... ....+ +|...|.+++|+| ++. +|+
T Consensus       191 d~~-~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~-~l~  267 (383)
T 3ei3_B          191 GLD-GHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDST-KLL  267 (383)
T ss_dssp             ETT-SCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSC-EEE
T ss_pred             ECC-CCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCC-EEE
Confidence            994 556666653 45789999988766589999999999999998533222 23344 7999999999999 775 699


Q ss_pred             EEeCCCcEEEEEcCCCccceeecCCC-----------------CeEEEEeecCCCEEEEccCCceEEEeecc
Q 036314          290 SASYDGKVMLWDLRTAWPLSVIDSHK-----------------DKVLCADWWRGDSVISGGVDSKLCVSSGV  344 (347)
Q Consensus       290 s~s~D~~i~lwd~~~~~~~~~~~~h~-----------------~~v~~~~~~~~~~l~s~s~D~~v~vw~~~  344 (347)
                      +++.|+.|++||+++++.+..+.+|.                 +.+..+.|+++..+ +++.|++|+||+..
T Consensus       268 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~-s~s~d~~i~iwd~~  338 (383)
T 3ei3_B          268 TTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL-LLNDKRTIDIYDAN  338 (383)
T ss_dssp             EEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT-CTTCCCCEEEEETT
T ss_pred             EEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc-ccCCCCeEEEEecC
Confidence            99999999999999988777776553                 34555777654444 88999999999964

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=1.3e-32  Score=247.33  Aligned_cols=250  Identities=16%  Similarity=0.186  Sum_probs=202.4

Q ss_pred             EeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEee
Q 036314           59 ILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGS  138 (347)
Q Consensus        59 ~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs  138 (347)
                      .+..|.+.|.+++|+|++    ..|++++.|++|++||+..++       .+....+.+|..+|.+++|+|++++|++++
T Consensus         3 ~~~~~~~~i~~~~~s~~~----~~l~~~~~d~~v~i~~~~~~~-------~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~   71 (372)
T 1k8k_C            3 YHSFLVEPISCHAWNKDR----TQIAICPNNHEVHIYEKSGNK-------WVQVHELKEHNGQVTGVDWAPDSNRIVTCG   71 (372)
T ss_dssp             EEESCSSCCCEEEECTTS----SEEEEECSSSEEEEEEEETTE-------EEEEEEEECCSSCEEEEEEETTTTEEEEEE
T ss_pred             eecccCCCeEEEEECCCC----CEEEEEeCCCEEEEEeCCCCc-------EEeeeeecCCCCcccEEEEeCCCCEEEEEc
Confidence            355699999999999854    379999999999999987653       124567889999999999999999999999


Q ss_pred             CCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEe-CCCCeEEEEecCCcEEEEECCCC
Q 036314          139 WDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMG  217 (347)
Q Consensus       139 ~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~l~s~s~dg~v~vwd~~~~  217 (347)
                      .|++|++||+.+...                       .....+..|...|.++.| +++++|++++.|+.|++||++.+
T Consensus        72 ~dg~i~vwd~~~~~~-----------------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~  128 (372)
T 1k8k_C           72 TDRNAYVWTLKGRTW-----------------------KPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQE  128 (372)
T ss_dssp             TTSCEEEEEEETTEE-----------------------EEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETT
T ss_pred             CCCeEEEEECCCCee-----------------------eeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCC
Confidence            999999999865311                       112234568889999998 57789999999999999999877


Q ss_pred             ce---eeeee--eCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCC---------------CCCCCeEEecCCCCCeeE
Q 036314          218 KD---LSDIF--CGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKP---------------GTSAPVFQFSSHNSWISA  277 (347)
Q Consensus       218 ~~---~~~~~--~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~---------------~~~~~~~~~~~h~~~v~~  277 (347)
                      ..   ...+.  +...+.+++++++ +.++++++.|+.|++||++..               ........+.+|...|.+
T Consensus       129 ~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  207 (372)
T 1k8k_C          129 NDWWVCKHIKKPIRSTVLSLDWHPN-SVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHG  207 (372)
T ss_dssp             TTEEEEEEECTTCCSCEEEEEECTT-SSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEE
T ss_pred             CcceeeeeeecccCCCeeEEEEcCC-CCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEE
Confidence            63   22222  2456889999765 568899999999999997521               112346677899999999


Q ss_pred             EEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecCCCCeEEEEeecCCC-EEEEccCCceEEEeeccc
Q 036314          278 CKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKVLCADWWRGD-SVISGGVDSKLCVSSGVS  345 (347)
Q Consensus       278 v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~s~D~~v~vw~~~~  345 (347)
                      ++|+|++. +|++++.|+.|++||+++++.+..+..|...|.+++|+++. +|+++ .|+.|++|+...
T Consensus       208 ~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~  274 (372)
T 1k8k_C          208 VCFSANGS-RVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDS  274 (372)
T ss_dssp             EEECSSSS-EEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred             EEECCCCC-EEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence            99999986 69999999999999999999999999999999999998654 55555 999999998643

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=4.3e-33  Score=248.97  Aligned_cols=251  Identities=13%  Similarity=0.177  Sum_probs=197.1

Q ss_pred             CcCCceeeccCCC----CCEEEEEecCCeEEEEcCC-Ce-EEEEeeccCCceEEEEEeec--CCCceEEEEEccCCCcEE
Q 036314           22 LHDDWVSAVDGSN----PGFILTGCYDNLGRVWKAG-GV-CTHILEGHCGAVSSVNIIKS--DGLKYVTVATASKDQTLR   93 (347)
Q Consensus        22 ~h~~~v~~~~~~~----~~~l~sg~~d~~i~iw~~~-~~-~~~~l~~h~~~V~~v~~~~~--~~~~~~~l~s~s~Dg~v~   93 (347)
                      +|...|.++++++    +.+|++|+.|++|++||.. +. ....+.+|...|.++.|.+.  -..++..|++++.|++|+
T Consensus        63 ~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~  142 (357)
T 3i2n_A           63 EKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVK  142 (357)
T ss_dssp             EESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEE
T ss_pred             cccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEE
Confidence            7999999999985    3799999999999999975 44 67789999999999977541  111334799999999999


Q ss_pred             EEeccccccccCccccceeeeeecccc----ceEEEE----EeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccC
Q 036314           94 LWKFDAEELVNHPKKIRSFKILRGHKA----SVHSIA----AETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKG  165 (347)
Q Consensus        94 ~wd~~~~~~~~~~~~~~~~~~~~~h~~----~V~~v~----~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~  165 (347)
                      +||+..++.        +...+..|..    .|.+++    |+++++++++++.|+.|++||+.+..             
T Consensus       143 vwd~~~~~~--------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-------------  201 (357)
T 3i2n_A          143 VWDPRQKDD--------PVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMA-------------  201 (357)
T ss_dssp             EECTTSCSS--------CSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTE-------------
T ss_pred             EEeCCCCCC--------cceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCc-------------
Confidence            999976531        2334444443    788988    78899999999999999999987532             


Q ss_pred             CCccccccccccccccccCCccceEEEEeC----CCCeEEEEecCCcEEEEECCCCceeeeee------eCeeeEEEEee
Q 036314          166 NNQVEEPQLEGEAISTLVGHTQCVSSVVWP----QQETIYSASWDHSVRTWDVEMGKDLSDIF------CGKALNCIDIG  235 (347)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~----~~~~l~s~s~dg~v~vwd~~~~~~~~~~~------~~~~~~~~~~~  235 (347)
                                   ......|...|.++.|.    +++.|++++.||.|++||+++++....+.      +...+.+++++
T Consensus       202 -------------~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~  268 (357)
T 3i2n_A          202 -------------LRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHL  268 (357)
T ss_dssp             -------------EEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEE
T ss_pred             -------------eeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEEC
Confidence                         11234577889999984    67899999999999999998776554442      34578899998


Q ss_pred             CCCCcEEEEecCCCcEEEEeCCCCCCC----------------CCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEE
Q 036314          236 GEGSALIAAGGSDPILRIWDPRKPGTS----------------APVFQFSSHNSWISACKWHNKSWFHLISASYDGKVML  299 (347)
Q Consensus       236 ~~~~~~la~~~~d~~i~iwd~~~~~~~----------------~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~l  299 (347)
                      |++..++++++.|+.|++||++.....                ..+..+.+|...|.+++|+|++..++++++.|+.|++
T Consensus       269 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~i  348 (357)
T 3i2n_A          269 PQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRV  348 (357)
T ss_dssp             TTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEE
T ss_pred             CCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEE
Confidence            876558999999999999998753322                2466788999999999999999764448999999999


Q ss_pred             EEcCCCc
Q 036314          300 WDLRTAW  306 (347)
Q Consensus       300 wd~~~~~  306 (347)
                      ||+.+.+
T Consensus       349 w~~~~~~  355 (357)
T 3i2n_A          349 LIVTKLN  355 (357)
T ss_dssp             EEECC--
T ss_pred             EECCCcc
Confidence            9998754

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=1.9e-32  Score=249.00  Aligned_cols=297  Identities=15%  Similarity=0.213  Sum_probs=194.4

Q ss_pred             CCcCCceeeccCCC-C-CEEEEEecCCeEEEEcCC-CeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEec
Q 036314           21 SLHDDWVSAVDGSN-P-GFILTGCYDNLGRVWKAG-GVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKF   97 (347)
Q Consensus        21 ~~h~~~v~~~~~~~-~-~~l~sg~~d~~i~iw~~~-~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~   97 (347)
                      .+|...|.++++++ + .+|++++.|+.|++||.. +.....+. +...+.++.+.+... +...+++++.|+.|++||+
T Consensus        96 ~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~d~  173 (408)
T 4a11_B           96 DVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVST-KHCLVAVGTRGPKVQLCDL  173 (408)
T ss_dssp             TCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCS-SCCEEEEEESSSSEEEEES
T ss_pred             ccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCC-CCcEEEEEcCCCeEEEEeC
Confidence            46999999999874 4 599999999999999986 45555554 778899999988543 3457999999999999999


Q ss_pred             cccccccCccccceeeeeeccccceEEEEEeCCCC-EEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccc
Q 036314           98 DAEELVNHPKKIRSFKILRGHKASVHSIAAETSGN-MVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEG  176 (347)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~-~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (347)
                      ..++         ....+.+|..+|.+++|+|+++ ++++++.|+.|++||+..........   ..      .......
T Consensus       174 ~~~~---------~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~---~~------~~~~~~~  235 (408)
T 4a11_B          174 KSGS---------CSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITL---DQ------HNGKKSQ  235 (408)
T ss_dssp             SSSC---------CCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEEC---CT------TTTCSCC
T ss_pred             CCcc---------eeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccc---cc------cccccce
Confidence            7654         3456788999999999999998 58999999999999997643111000   00      0000011


Q ss_pred             cccccccCCccceEEEEe-CCCCeEEEEecCCcEEEEECCCCceeeeeeeC------eeeEEEEeeCCCCcEEEEecCCC
Q 036314          177 EAISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFCG------KALNCIDIGGEGSALIAAGGSDP  249 (347)
Q Consensus       177 ~~~~~~~~h~~~v~~~~~-~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~------~~~~~~~~~~~~~~~la~~~~d~  249 (347)
                      .......+|...|.+++| |++++|++++.|+.|++||+++++........      ..... .........+++++.|+
T Consensus       236 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  314 (408)
T 4a11_B          236 AVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKF-TVSCGCSSEFVFVPYGS  314 (408)
T ss_dssp             CTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCC-EECCSSSSCEEEEEETT
T ss_pred             eeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceecccccccccccccee-EEecCCCceEEEEecCC
Confidence            123345678899999998 57788999999999999999987755433211      11111 11122233456667899


Q ss_pred             cEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecCCCCeEEEEeec--CCC
Q 036314          250 ILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKVLCADWW--RGD  327 (347)
Q Consensus       250 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h~~~v~~~~~~--~~~  327 (347)
                      .|++||+...   ..+..+.+|...|.+++|+|++. +|++++.||.|++||+++++++.....+...   ..+.  ...
T Consensus       315 ~i~v~d~~~~---~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~---~~~~~~~~~  387 (408)
T 4a11_B          315 TIAVYTVYSG---EQITMLKGHYKTVDCCVFQSNFQ-ELYSGSRDCNILAWVPSLYEPVPDDDETTTK---SQLNPAFED  387 (408)
T ss_dssp             EEEEEETTTC---CEEEEECCCSSCEEEEEEETTTT-EEEEEETTSCEEEEEECC-------------------------
T ss_pred             EEEEEECcCC---cceeeeccCCCeEEEEEEcCCCC-EEEEECCCCeEEEEeCCCCCccCCCCceEec---cccccccce
Confidence            9999998753   35778899999999999999986 5999999999999999998776654433211   2232  234


Q ss_pred             EEEEccCCceEEEeeccc
Q 036314          328 SVISGGVDSKLCVSSGVS  345 (347)
Q Consensus       328 ~l~s~s~D~~v~vw~~~~  345 (347)
                      .+.+++.|+.+++|+-++
T Consensus       388 ~~~~~~~~~~~~~W~~~~  405 (408)
T 4a11_B          388 AWSSSDEEGGTSAWSHPQ  405 (408)
T ss_dssp             ------------------
T ss_pred             eecccCccCceeecCCcc
Confidence            567788899999998775

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=1.2e-32  Score=244.80  Aligned_cols=246  Identities=13%  Similarity=0.101  Sum_probs=202.1

Q ss_pred             EEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCC-EEEE
Q 036314           58 HILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGN-MVCS  136 (347)
Q Consensus        58 ~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~-~l~s  136 (347)
                      ....+|.+.|.+++|+|++    ..|++++.|++|++|++..++.      ......+.+|..+|.+++|+|+++ +|++
T Consensus         5 ~~~~~h~~~v~~~~~s~~~----~~l~~~~~d~~v~iw~~~~~~~------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~   74 (342)
T 1yfq_A            5 QIEQAPKDYISDIKIIPSK----SLLLITSWDGSLTVYKFDIQAK------NVDLLQSLRYKHPLLCCNFIDNTDLQIYV   74 (342)
T ss_dssp             ECSSCCSSCEEEEEEEGGG----TEEEEEETTSEEEEEEEETTTT------EEEEEEEEECSSCEEEEEEEESSSEEEEE
T ss_pred             ecccCCCCcEEEEEEcCCC----CEEEEEcCCCeEEEEEeCCCCc------cccceeeeecCCceEEEEECCCCCcEEEE
Confidence            3456899999999999954    3689999999999999976531      112345568999999999999999 9999


Q ss_pred             eeCCCcEEEEec-CCCCCCCccceeeeccCCCccccccccccccccccC--CccceEEEEeCCCCeEEEEecCCcEEEEE
Q 036314          137 GSWDCTISLWRT-NDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVG--HTQCVSSVVWPQQETIYSASWDHSVRTWD  213 (347)
Q Consensus       137 gs~Dg~I~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~l~s~s~dg~v~vwd  213 (347)
                      |+.|+.|++||+ ....                          ...+.+  |...|.++.|.++..|++++.|+.|++||
T Consensus        75 ~~~dg~i~~wd~~~~~~--------------------------~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd  128 (342)
T 1yfq_A           75 GTVQGEILKVDLIGSPS--------------------------FQALTNNEANLGICRICKYGDDKLIAASWDGLIEVID  128 (342)
T ss_dssp             EETTSCEEEECSSSSSS--------------------------EEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEEC
T ss_pred             EcCCCeEEEEEeccCCc--------------------------eEeccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEc
Confidence            999999999998 6531                          235566  89999999984488999999999999999


Q ss_pred             CCC---------CceeeeeeeCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCC-CCCCCCeEEecCCCCCeeEEEeCC-
Q 036314          214 VEM---------GKDLSDIFCGKALNCIDIGGEGSALIAAGGSDPILRIWDPRK-PGTSAPVFQFSSHNSWISACKWHN-  282 (347)
Q Consensus       214 ~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~-~~~~~~~~~~~~h~~~v~~v~~s~-  282 (347)
                      +++         ++.+..+.....+.++++.++.   +++++.|+.|++||++. ... ........|...+.+++|+| 
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~~~~~i~~i~~~~~  204 (342)
T 1yfq_A          129 PRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSR---LIVGMNNSQVQWFRLPLCEDD-NGTIEESGLKYQIRDVALLPK  204 (342)
T ss_dssp             HHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSE---EEEEESTTEEEEEESSCCTTC-CCEEEECSCSSCEEEEEECSG
T ss_pred             ccccccccccccCCeeeEEeeCCceEEEEecCCc---EEEEeCCCeEEEEECCccccc-cceeeecCCCCceeEEEECCC
Confidence            987         6666666556678899997543   78889999999999986 322 23345567888999999999 


Q ss_pred             CCCeEEEEEeCCCcEEEEEcCCC------ccceeecCCCC---------eEEEEeecC-CCEEEEccCCceEEEeecc
Q 036314          283 KSWFHLISASYDGKVMLWDLRTA------WPLSVIDSHKD---------KVLCADWWR-GDSVISGGVDSKLCVSSGV  344 (347)
Q Consensus       283 ~~~~~l~s~s~D~~i~lwd~~~~------~~~~~~~~h~~---------~v~~~~~~~-~~~l~s~s~D~~v~vw~~~  344 (347)
                      ++. +|++++.||.|++||++..      +....+.+|..         .|.+++|+| +++|++++.||+|++|+..
T Consensus       205 ~~~-~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~  281 (342)
T 1yfq_A          205 EQE-GYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQ  281 (342)
T ss_dssp             GGC-EEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETT
T ss_pred             CCC-EEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCc
Confidence            875 6999999999999999886      67778888865         999999986 7789999999999999865

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.9e-33  Score=247.51  Aligned_cols=268  Identities=8%  Similarity=-0.022  Sum_probs=192.4

Q ss_pred             CCCEEEEEecCCeEEEEcCC-CeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCcccccee
Q 036314           34 NPGFILTGCYDNLGRVWKAG-GVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSF  112 (347)
Q Consensus        34 ~~~~l~sg~~d~~i~iw~~~-~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~  112 (347)
                      ++.+|+|||.||+|++||.. +..+..+.  ...|.++.++|.       +++++.|++|++|+.............+.+
T Consensus        47 d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~-------~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~  117 (343)
T 3lrv_A           47 DKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA-------IISRGPCNRLLLLYPGNQITILDSKTNKVL  117 (343)
T ss_dssp             EEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS-------EEEECSTTEEEEEETTTEEEEEETTTCCEE
T ss_pred             CCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc-------eEEecCCCeEEEEEccCceEEeecCCccee
Confidence            56799999999999999974 55555555  456777878772       899999999999987643211111112223


Q ss_pred             eee-eccccceEEEEEeC--CCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccc-cCCccc
Q 036314          113 KIL-RGHKASVHSIAAET--SGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTL-VGHTQC  188 (347)
Q Consensus       113 ~~~-~~h~~~V~~v~~s~--~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~  188 (347)
                      ..+ .+|..+|.+++|+|  +++++++++.|++|++||+++...                         .... ..|...
T Consensus       118 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~-------------------------~~~~~~~~~~~  172 (343)
T 3lrv_A          118 REIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQ-------------------------YIVHSAKSDVE  172 (343)
T ss_dssp             EEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCE-------------------------EEEECCCSSCC
T ss_pred             EEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcE-------------------------EEEEecCCCCc
Confidence            333 36778999999999  999999999999999999876421                         1122 234456


Q ss_pred             eEEEEe-CCCCeEEEEecCCcEEEEECCCCcee-eeeee--CeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCC
Q 036314          189 VSSVVW-PQQETIYSASWDHSVRTWDVEMGKDL-SDIFC--GKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAP  264 (347)
Q Consensus       189 v~~~~~-~~~~~l~s~s~dg~v~vwd~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~  264 (347)
                      +.+++| |++.+|++|+.||.|++||+++++.+ ..+..  ..++.+++|+|+ +.++++++ |+.|++||++.......
T Consensus       173 i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~-g~~l~s~~-~~~v~iwd~~~~~~~~~  250 (343)
T 3lrv_A          173 YSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADN-GYWMVVEC-DQTVVCFDLRKDVGTLA  250 (343)
T ss_dssp             CCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTT-SSEEEEEE-SSBEEEEETTSSTTCBS
T ss_pred             eEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCC-CCEEEEEe-CCeEEEEEcCCCCccee
Confidence            888888 57888999999999999999998876 55554  467999999765 46778888 55999999986543222


Q ss_pred             eEEecCCCCCee--EEEeCCCCCeEEEEEeC-CCcEEEEEcCCCccceeecCCCCeEEEEeec----CCCEEEEccCCce
Q 036314          265 VFQFSSHNSWIS--ACKWHNKSWFHLISASY-DGKVMLWDLRTAWPLSVIDSHKDKVLCADWW----RGDSVISGGVDSK  337 (347)
Q Consensus       265 ~~~~~~h~~~v~--~v~~s~~~~~~l~s~s~-D~~i~lwd~~~~~~~~~~~~h~~~v~~~~~~----~~~~l~s~s~D~~  337 (347)
                      +..+..|...+.  +++|+|++. +|++++. |+.|+||++++....-..    ..+..+.|.    +...|++++.|+.
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~g~-~l~~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~  325 (343)
T 3lrv_A          251 YPTYTIPEFKTGTVTYDIDDSGK-NMIAYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADFTDMDVVCGDGG  325 (343)
T ss_dssp             SCCCBC-----CCEEEEECTTSS-EEEEEETTTTEEEEEEECTTTCSEEE----EEEEECCC----CCCCEEEEEEETTE
T ss_pred             ecccccccccccceEEEECCCCC-EEEEecCCCCcEEEEEEcccccceEe----cCceeEecCccccccceeEEEecCCc
Confidence            333333444444  699999986 5888887 999999999765433222    567778886    3557888899998


Q ss_pred             EEEee
Q 036314          338 LCVSS  342 (347)
Q Consensus       338 v~vw~  342 (347)
                      +.++-
T Consensus       326 ~~~~~  330 (343)
T 3lrv_A          326 IAAIL  330 (343)
T ss_dssp             EEEEE
T ss_pred             eEEEE
Confidence            88764

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.1e-33  Score=275.81  Aligned_cols=254  Identities=20%  Similarity=0.340  Sum_probs=201.8

Q ss_pred             EEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCC--CCEE
Q 036314           57 THILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETS--GNMV  134 (347)
Q Consensus        57 ~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~--~~~l  134 (347)
                      ..++.+|.+.|.+++|+|++.    .|++|+.||+|++||+..++       .+....+.+|.++|.+++|+++  +++|
T Consensus         2 ~~~l~gH~~~V~~l~~s~dg~----~latg~~dg~I~vwd~~~~~-------~~~~~~l~~h~~~V~~l~~s~~~~~~~l   70 (753)
T 3jro_A            2 VVIANAHNELIHDAVLDYYGK----RLATCSSDKTIKIFEVEGET-------HKLIDTLTGHEGPVWRVDWAHPKFGTIL   70 (753)
T ss_dssp             ------CCCCEEEECCCSSSC----CEEEEETTTEEEEEEEETTE-------EEEEEEECCCSSCEEEEEECCTTSCSEE
T ss_pred             eeecccCcceeEEEEECCCCC----eEEEEECCCcEEEEecCCCC-------CccceeccCCcCceEEEEecCCCCCCEE
Confidence            356889999999999998543    69999999999999987432       2355678899999999999988  9999


Q ss_pred             EEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEeC-C--CCeEEEEecCCcEEE
Q 036314          135 CSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWP-Q--QETIYSASWDHSVRT  211 (347)
Q Consensus       135 ~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~--~~~l~s~s~dg~v~v  211 (347)
                      ++|+.||+|++||+.++.                       ......+.+|...|.++.|. +  +..+++++.||+|++
T Consensus        71 ~s~s~Dg~I~vwd~~~~~-----------------------~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~v  127 (753)
T 3jro_A           71 ASCSYDGKVLIWKEENGR-----------------------WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSV  127 (753)
T ss_dssp             EEEETTSCEEEEEEETTE-----------------------EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEE
T ss_pred             EEEeCCCeEEEEECCCCc-----------------------ccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEE
Confidence            999999999999986531                       11345667899999999984 5  788999999999999


Q ss_pred             EECCCCceeee--ee-eCeeeEEEEeeCC------------CCcEEEEecCCCcEEEEeCCCCCCC-CCeEEecCCCCCe
Q 036314          212 WDVEMGKDLSD--IF-CGKALNCIDIGGE------------GSALIAAGGSDPILRIWDPRKPGTS-APVFQFSSHNSWI  275 (347)
Q Consensus       212 wd~~~~~~~~~--~~-~~~~~~~~~~~~~------------~~~~la~~~~d~~i~iwd~~~~~~~-~~~~~~~~h~~~v  275 (347)
                      ||++.+.....  +. +...+.++.++|.            ++..+++|+.||.|++||++..... .....+.+|...|
T Consensus       128 wdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V  207 (753)
T 3jro_A          128 VEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWV  207 (753)
T ss_dssp             EECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCE
T ss_pred             EEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcE
Confidence            99987743322  22 3457889999774            4568899999999999998754221 2356778999999


Q ss_pred             eEEEeCCCC--CeEEEEEeCCCcEEEEEcCCCc-----cceeecCCCCeEEEEeecC-CCEEEEccCCceEEEeecc
Q 036314          276 SACKWHNKS--WFHLISASYDGKVMLWDLRTAW-----PLSVIDSHKDKVLCADWWR-GDSVISGGVDSKLCVSSGV  344 (347)
Q Consensus       276 ~~v~~s~~~--~~~l~s~s~D~~i~lwd~~~~~-----~~~~~~~h~~~v~~~~~~~-~~~l~s~s~D~~v~vw~~~  344 (347)
                      .+++|+|++  +.+|++++.||+|++||++++.     .......|.+.|++++|+| |++|++++.||.|+||+..
T Consensus       208 ~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~  284 (753)
T 3jro_A          208 RDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN  284 (753)
T ss_dssp             EEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCC
T ss_pred             EEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecC
Confidence            999999993  4679999999999999999864     2334456889999999985 7789999999999999864

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-31  Score=248.41  Aligned_cols=279  Identities=10%  Similarity=0.068  Sum_probs=210.4

Q ss_pred             CCceeeccCCC-CCEEEEEecCCeEEEEcC-CCe---EEEEeec------------------------------------
Q 036314           24 DDWVSAVDGSN-PGFILTGCYDNLGRVWKA-GGV---CTHILEG------------------------------------   62 (347)
Q Consensus        24 ~~~v~~~~~~~-~~~l~sg~~d~~i~iw~~-~~~---~~~~l~~------------------------------------   62 (347)
                      ..++.+++++. +.+|++ +.++.|++||. .|.   .+..+..                                    
T Consensus         4 ~~p~~~v~~s~dg~~l~~-~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (450)
T 2vdu_B            4 IHPLQNLLTSRDGSLVFA-IIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD   82 (450)
T ss_dssp             ECCCCEEEECSSSSEEEE-EETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred             cccEEEEEecCCCCEEEE-EeCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence            45678888884 555554 46889999995 455   4444443                                    


Q ss_pred             ------------------cCCceEEEEEeecCCCceEEEEEccCCCcEEEEecc--ccccccCccccceeeeee--cccc
Q 036314           63 ------------------HCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFD--AEELVNHPKKIRSFKILR--GHKA  120 (347)
Q Consensus        63 ------------------h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~--~~~~~~~~~~~~~~~~~~--~h~~  120 (347)
                                        |.+.|.+++|+|++.   .++++++.||+|++||+.  .++         .+..+.  .|..
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~---~l~~~~~~dg~v~iwd~~~~~~~---------~~~~~~~~~~~~  150 (450)
T 2vdu_B           83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDES---RLIACADSDKSLLVFDVDKTSKN---------VLKLRKRFCFSK  150 (450)
T ss_dssp             -----------------CCCCCEEEEEECTTSS---EEEEEEGGGTEEEEEEECSSSSS---------CEEEEEEEECSS
T ss_pred             cccccCccccCCCCCCCccCCceEEEEEcCCCC---EEEEEECCCCeEEEEECcCCCCc---------eeeeeecccCCC
Confidence                              334799999999543   234899999999999997  543         233444  5778


Q ss_pred             ceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEe-CC---
Q 036314          121 SVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW-PQ---  196 (347)
Q Consensus       121 ~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~---  196 (347)
                      .|.+++|+|++++|++|+.|+.|++|++.+.....                     .....+.+|...|.++.| |+   
T Consensus       151 ~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~---------------------~~~~~~~~h~~~v~~~~~sp~~~~  209 (450)
T 2vdu_B          151 RPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEK---------------------FTQEPILGHVSMLTDVHLIKDSDG  209 (450)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSS---------------------CCCCCSEECSSCEEEEEEEECTTS
T ss_pred             CceEEEEcCCCCEEEEEeCCCcEEEEecCCccccc---------------------ccceeeecccCceEEEEEcCCCCC
Confidence            99999999999999999999999999987643210                     023356789999999998 46   


Q ss_pred             CCeEEEEecCCcEEEEECCCCceeeeee--eCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEec-----
Q 036314          197 QETIYSASWDHSVRTWDVEMGKDLSDIF--CGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFS-----  269 (347)
Q Consensus       197 ~~~l~s~s~dg~v~vwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~-----  269 (347)
                      +++|++++.|++|++||++++..+..+.  +...+.+++|+  ++.+|++++.|+.|++||++...   .+..+.     
T Consensus       210 ~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s--d~~~l~s~~~d~~v~vwd~~~~~---~~~~~~~~~~~  284 (450)
T 2vdu_B          210 HQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG--KDYLLLSAGGDDKIFAWDWKTGK---NLSTFDYNSLI  284 (450)
T ss_dssp             CEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC--STTEEEEEESSSEEEEEETTTCC---EEEEEECHHHH
T ss_pred             CcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC--CCCEEEEEeCCCeEEEEECCCCc---Eeeeecchhhh
Confidence            6689999999999999999888776643  34578999997  56788999999999999997532   233333     


Q ss_pred             --------------------CCCCCeeEEEeCCCCCeEEEEEe-CCCcEEEEEc--CCC---ccceeecCCCCeEEEEee
Q 036314          270 --------------------SHNSWISACKWHNKSWFHLISAS-YDGKVMLWDL--RTA---WPLSVIDSHKDKVLCADW  323 (347)
Q Consensus       270 --------------------~h~~~v~~v~~s~~~~~~l~s~s-~D~~i~lwd~--~~~---~~~~~~~~h~~~v~~~~~  323 (347)
                                          .+...|.++.|+|++.+ |++++ .|+.|+|||+  ..+   +.+..+.+| +.|++++|
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~-l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~  362 (450)
T 2vdu_B          285 KPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPF-VAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSA  362 (450)
T ss_dssp             GGGCCTTSBC----------CBCCCEEEEEECSSSSE-EEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEE
T ss_pred             hhhhhhcccccccccccccccceEEEEEEEEeCCCCE-EEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEe
Confidence                                22346899999999875 67776 8999999999  555   556677888 88999999


Q ss_pred             cCCCEEEEccC-------CceEEEeec
Q 036314          324 WRGDSVISGGV-------DSKLCVSSG  343 (347)
Q Consensus       324 ~~~~~l~s~s~-------D~~v~vw~~  343 (347)
                      +|+..+++.+.       +..|.||..
T Consensus       363 ~~~~~~v~~~~~~~~~~~~~~i~v~~~  389 (450)
T 2vdu_B          363 HNDEFQVTLDNKESSGVQKNFAKFIEY  389 (450)
T ss_dssp             ETTEEEEEECCTTCCSSCCCSEEEEEE
T ss_pred             cCCcEEEEEecccCCCCCCcceEEEEE
Confidence            98766655433       556888864

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=2.8e-32  Score=269.86  Aligned_cols=247  Identities=17%  Similarity=0.285  Sum_probs=209.1

Q ss_pred             EEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEEE
Q 036314           56 CTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVC  135 (347)
Q Consensus        56 ~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~  135 (347)
                      ..+.+.+|.+.|.+++|+|++    ..|++++.||+|++||+.+++         ....+.+|..+|.+++|+|++++|+
T Consensus         5 ~~~~~~~h~~~v~~i~~sp~~----~~la~~~~~g~v~iwd~~~~~---------~~~~~~~~~~~v~~~~~s~~~~~l~   71 (814)
T 3mkq_A            5 IKKTFSNRSDRVKGIDFHPTE----PWVLTTLYSGRVEIWNYETQV---------EVRSIQVTETPVRAGKFIARKNWII   71 (814)
T ss_dssp             CEEEEEEECSCEEEEEECSSS----SEEEEEETTSEEEEEETTTTE---------EEEEEECCSSCEEEEEEEGGGTEEE
T ss_pred             cceeeecCCCceEEEEECCCC----CEEEEEeCCCEEEEEECCCCc---------eEEEEecCCCcEEEEEEeCCCCEEE
Confidence            356789999999999999954    379999999999999987654         4567789999999999999999999


Q ss_pred             EeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEe-CCCCeEEEEecCCcEEEEEC
Q 036314          136 SGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDV  214 (347)
Q Consensus       136 sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~l~s~s~dg~v~vwd~  214 (347)
                      +++.||+|++||+.++                         ..+..+.+|...|.+++| |+++.|++++.||+|++||+
T Consensus        72 ~~~~dg~i~vw~~~~~-------------------------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~  126 (814)
T 3mkq_A           72 VGSDDFRIRVFNYNTG-------------------------EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNW  126 (814)
T ss_dssp             EEETTSEEEEEETTTC-------------------------CEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEG
T ss_pred             EEeCCCeEEEEECCCC-------------------------cEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEEC
Confidence            9999999999998753                         235567789999999999 57778999999999999999


Q ss_pred             CCCc-eeeeee-eCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCC-CCCeeEEEeCC--CCCeEEE
Q 036314          215 EMGK-DLSDIF-CGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSH-NSWISACKWHN--KSWFHLI  289 (347)
Q Consensus       215 ~~~~-~~~~~~-~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h-~~~v~~v~~s~--~~~~~l~  289 (347)
                      +++. ....+. +...+.+++|+|.++..+++++.|+.|++||++...   ....+..| ...+.+++|+|  ++. +|+
T Consensus       127 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~-~l~  202 (814)
T 3mkq_A          127 ENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST---PNFTLTTGQERGVNYVDYYPLPDKP-YMI  202 (814)
T ss_dssp             GGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSS---CSEEEECCCTTCCCEEEECCSTTCC-EEE
T ss_pred             CCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc---ceeEEecCCCCCEEEEEEEECCCCC-EEE
Confidence            8873 333333 345789999988566789999999999999987532   23444444 48899999999  775 699


Q ss_pred             EEeCCCcEEEEEcCCCccceeecCCCCeEEEEeecC-CCEEEEccCCceEEEeecc
Q 036314          290 SASYDGKVMLWDLRTAWPLSVIDSHKDKVLCADWWR-GDSVISGGVDSKLCVSSGV  344 (347)
Q Consensus       290 s~s~D~~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~l~s~s~D~~v~vw~~~  344 (347)
                      +++.|+.|++||+++++.+..+.+|.+.|.++.|+| +.+|++++.||+|++|+..
T Consensus       203 ~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~  258 (814)
T 3mkq_A          203 TASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSS  258 (814)
T ss_dssp             EECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETT
T ss_pred             EEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECC
Confidence            999999999999999998999999999999999986 6689999999999999865

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=3.2e-32  Score=250.71  Aligned_cols=259  Identities=21%  Similarity=0.271  Sum_probs=207.7

Q ss_pred             CCCcCCceeeccCCC--CCEEEEEecCCeEEEEcCC-----------CeEEEEeeccCCceEEEEEeecCCCceEEEEEc
Q 036314           20 PSLHDDWVSAVDGSN--PGFILTGCYDNLGRVWKAG-----------GVCTHILEGHCGAVSSVNIIKSDGLKYVTVATA   86 (347)
Q Consensus        20 ~~~h~~~v~~~~~~~--~~~l~sg~~d~~i~iw~~~-----------~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~   86 (347)
                      ..+|.+.|+++++++  +.+||+++.||.|++|+..           ......+.+|...|.+++|+|.+..   .|++|
T Consensus       124 ~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~---~l~s~  200 (430)
T 2xyi_A          124 KINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNG---YLLSA  200 (430)
T ss_dssp             EEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTT---EEEEE
T ss_pred             EEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCC---eEEEE
Confidence            347999999999885  3599999999999999964           3456778999999999999985432   68999


Q ss_pred             cCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeC-CCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccC
Q 036314           87 SKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAET-SGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKG  165 (347)
Q Consensus        87 s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~-~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~  165 (347)
                      +.||+|++|++..+....  ........+.+|...|.+++|+| ++.+|++++.|+.|++||++....            
T Consensus       201 ~~dg~i~vwd~~~~~~~~--~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~------------  266 (430)
T 2xyi_A          201 SDDHTICLWDINATPKEH--RVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNT------------  266 (430)
T ss_dssp             CTTSCEEEEETTSCCBGG--GEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCS------------
T ss_pred             eCCCeEEEEeCCCCCCCC--ceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCC------------
Confidence            999999999997632110  11122456778999999999999 678999999999999999975421            


Q ss_pred             CCccccccccccccccccCCccceEEEEeC-CCC-eEEEEecCCcEEEEECCCC-ceeeeee-eCeeeEEEEeeCCCCcE
Q 036314          166 NNQVEEPQLEGEAISTLVGHTQCVSSVVWP-QQE-TIYSASWDHSVRTWDVEMG-KDLSDIF-CGKALNCIDIGGEGSAL  241 (347)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~-~l~s~s~dg~v~vwd~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~  241 (347)
                                ...+..+..|...|.++.|. +++ .|++++.||+|++||++.. ..+..+. +...+.++.++|.+..+
T Consensus       267 ----------~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~  336 (430)
T 2xyi_A          267 ----------SKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETI  336 (430)
T ss_dssp             ----------SSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTE
T ss_pred             ----------CcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCE
Confidence                      12234556788999999995 455 5889999999999999874 4455554 34578999999888788


Q ss_pred             EEEecCCCcEEEEeCCCCCC-----------CCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCC
Q 036314          242 IAAGGSDPILRIWDPRKPGT-----------SAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTA  305 (347)
Q Consensus       242 la~~~~d~~i~iwd~~~~~~-----------~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~  305 (347)
                      +++++.|+.|++||++....           +..++.+.+|...|.+++|+|++..+|++++.|+.|+||+++..
T Consensus       337 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~  411 (430)
T 2xyi_A          337 LASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN  411 (430)
T ss_dssp             EEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred             EEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence            99999999999999875221           23467778999999999999999867999999999999999753

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=2.7e-32  Score=248.28  Aligned_cols=269  Identities=17%  Similarity=0.143  Sum_probs=170.1

Q ss_pred             CCcCCceeeccCC-CCCEEEEEecCCeEEEEcCC-CeE-----EEEeeccCCceEEEEEeecC----CCceEEEEEccCC
Q 036314           21 SLHDDWVSAVDGS-NPGFILTGCYDNLGRVWKAG-GVC-----THILEGHCGAVSSVNIIKSD----GLKYVTVATASKD   89 (347)
Q Consensus        21 ~~h~~~v~~~~~~-~~~~l~sg~~d~~i~iw~~~-~~~-----~~~l~~h~~~V~~v~~~~~~----~~~~~~l~s~s~D   89 (347)
                      ..|...+....++ ++.+||+|+.|++|||||.. +.+     ...+.||++.|++++|+|..    ..++.+|||+|.|
T Consensus        86 ~~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D  165 (393)
T 4gq1_A           86 NLHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDD  165 (393)
T ss_dssp             C----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETT
T ss_pred             cccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECC
Confidence            3455545444455 34589999999999999964 332     23477999999999998721    2256789999999


Q ss_pred             CcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCC-CEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCc
Q 036314           90 QTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSG-NMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQ  168 (347)
Q Consensus        90 g~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~-~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~  168 (347)
                      ++||+||+..+.         +...+.+|..+|.+++|+|++ .+|++|+.|++|++||+..+.................
T Consensus       166 ~tv~~Wd~~~~~---------~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~  236 (393)
T 4gq1_A          166 CTLIIWRLTDEG---------PILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWL  236 (393)
T ss_dssp             SEEEEEEEETTE---------EEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCS
T ss_pred             CeEEEEECCCCc---------eeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceE
Confidence            999999987543         344566889999999999987 4899999999999999987543211100000000000


Q ss_pred             cccccccccccccccCCccceEEEEe--CCCCeEEEEecCCcEEEEECCCCceeeeeeeCe-------------------
Q 036314          169 VEEPQLEGEAISTLVGHTQCVSSVVW--PQQETIYSASWDHSVRTWDVEMGKDLSDIFCGK-------------------  227 (347)
Q Consensus       169 ~~~~~~~~~~~~~~~~h~~~v~~~~~--~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~-------------------  227 (347)
                      ...............+|...+.++.|  ++++.|++++.|+++++||+..+.....+....                   
T Consensus       237 ~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  316 (393)
T 4gq1_A          237 LTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFP  316 (393)
T ss_dssp             EEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSC
T ss_pred             EecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccC
Confidence            00000000112234578888888887  578899999999999999998765443332110                   


Q ss_pred             -eeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcC
Q 036314          228 -ALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLR  303 (347)
Q Consensus       228 -~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~  303 (347)
                       .+.+..+.+.++.++++|+.|++|++||+..+.   ....+.+|...|.+++|+|+|. +||+++.|| +.+|.+.
T Consensus       317 ~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~---~~~~~~~~~~~V~svafspdG~-~LA~as~~G-v~lvrL~  388 (393)
T 4gq1_A          317 SLLGACPHPRYMDYFATAHSQHGLIQLINTYEKD---SNSIPIQLGMPIVDFCWHQDGS-HLAIATEGS-VLLTRLM  388 (393)
T ss_dssp             CSSCCEECSSCTTEEEEEETTTTEEEEEETTCTT---CCEEEEECSSCEEEEEECTTSS-EEEEEESSE-EEEEEEG
T ss_pred             cceeEEEccCCCCEEEEEECCCCEEEEEECCCCc---EEEEecCCCCcEEEEEEcCCCC-EEEEEeCCC-eEEEEEe
Confidence             111122223355567888999999999987532   3456678899999999999996 599998776 5566553

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.5e-32  Score=267.23  Aligned_cols=254  Identities=17%  Similarity=0.208  Sum_probs=202.4

Q ss_pred             CCCCcCCceeeccCC-CCCEEEEEecCCeEEEEcCC---CeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEE
Q 036314           19 EPSLHDDWVSAVDGS-NPGFILTGCYDNLGRVWKAG---GVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRL   94 (347)
Q Consensus        19 ~~~~h~~~v~~~~~~-~~~~l~sg~~d~~i~iw~~~---~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~   94 (347)
                      ...+|++.|++++++ ++.+|++|+.||+|++||..   +.+...+.+|.+.|.+++|+++.  ++..|++|+.||+|++
T Consensus         4 ~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~--~~~~l~s~s~Dg~I~v   81 (753)
T 3jro_A            4 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK--FGTILASCSYDGKVLI   81 (753)
T ss_dssp             ----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTT--SCSEEEEEETTSCEEE
T ss_pred             ecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCC--CCCEEEEEeCCCeEEE
Confidence            356899999999998 56799999999999999974   35677899999999999998752  1347999999999999


Q ss_pred             EeccccccccCccccceeeeeeccccceEEEEEeCC--CCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccc
Q 036314           95 WKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETS--GNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEP  172 (347)
Q Consensus        95 wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~--~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  172 (347)
                      ||+.+++       ......+.+|..+|.+++|+|+  ++.+++|+.||+|++||+.....                   
T Consensus        82 wd~~~~~-------~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~-------------------  135 (753)
T 3jro_A           82 WKEENGR-------WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT-------------------  135 (753)
T ss_dssp             EEEETTE-------EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSC-------------------
T ss_pred             EECCCCc-------ccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCC-------------------
Confidence            9997653       1245567889999999999999  99999999999999999876421                   


Q ss_pred             cccccccccccCCccceEEEEeCC--------------CCeEEEEecCCcEEEEECCCCcee----eeee-eCeeeEEEE
Q 036314          173 QLEGEAISTLVGHTQCVSSVVWPQ--------------QETIYSASWDHSVRTWDVEMGKDL----SDIF-CGKALNCID  233 (347)
Q Consensus       173 ~~~~~~~~~~~~h~~~v~~~~~~~--------------~~~l~s~s~dg~v~vwd~~~~~~~----~~~~-~~~~~~~~~  233 (347)
                          .....+.+|...|.++.|.+              +..+++++.||+|++||++++...    ..+. +...+.+++
T Consensus       136 ----~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~  211 (753)
T 3jro_A          136 ----TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVA  211 (753)
T ss_dssp             ----CCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEE
T ss_pred             ----cceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEE
Confidence                11224567888999999843              678999999999999999877432    2222 245789999


Q ss_pred             eeCCC--CcEEEEecCCCcEEEEeCCCCCCC--CCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCC
Q 036314          234 IGGEG--SALIAAGGSDPILRIWDPRKPGTS--APVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTA  305 (347)
Q Consensus       234 ~~~~~--~~~la~~~~d~~i~iwd~~~~~~~--~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~  305 (347)
                      ++|++  +..+++++.|+.|++||++.....  ........|...|.+++|+|++. +|++|+.||.|++||++.+
T Consensus       212 ~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~-~l~s~s~Dg~I~vwd~~~~  286 (753)
T 3jro_A          212 WSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGN-VLALSGGDNKVTLWKENLE  286 (753)
T ss_dssp             ECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTC-CEEEECSSSCEECCBCCSS
T ss_pred             eccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCC-EEEEEcCCCEEEEEecCCC
Confidence            98764  678999999999999998754211  12334456888999999999986 5999999999999999853

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=4.7e-32  Score=249.97  Aligned_cols=276  Identities=16%  Similarity=0.250  Sum_probs=196.1

Q ss_pred             ccCCceEEEEEeecCCCceEEEEEccCCCcEEEEecccccccc--Cccccceeeeeeccc------------cceEEEEE
Q 036314           62 GHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVN--HPKKIRSFKILRGHK------------ASVHSIAA  127 (347)
Q Consensus        62 ~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~--~~~~~~~~~~~~~h~------------~~V~~v~~  127 (347)
                      .|.+.|.+++|+|++    .+|++|+.||+|++|++..++...  .....+....+.+|.            .+|.+++|
T Consensus        26 ~~~~~V~~v~~s~~g----~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~  101 (447)
T 3dw8_B           26 AEADIISTVEFNHSG----ELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRW  101 (447)
T ss_dssp             CGGGSEEEEEECSSS----SEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEE
T ss_pred             cccCcEEEEEECCCC----CEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEE
Confidence            367899999999954    379999999999999998654211  112233566788998            88999999


Q ss_pred             eCCC--CEEEEeeCCCcEEEEecCCCCCCCccceeeec-------cCCCcccc-------cccccccccc-ccCCccceE
Q 036314          128 ETSG--NMVCSGSWDCTISLWRTNDSDAAGNQVSIKKR-------KGNNQVEE-------PQLEGEAIST-LVGHTQCVS  190 (347)
Q Consensus       128 s~~~--~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~-------~~~~~~~~-------~~~~~~~~~~-~~~h~~~v~  190 (347)
                      +|++  ..|++++.|++|++|++...............       ........       ........+. ..+|...|.
T Consensus       102 ~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~  181 (447)
T 3dw8_B          102 LPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHIN  181 (447)
T ss_dssp             CCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCC
T ss_pred             cCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceE
Confidence            9998  79999999999999998653210000000000       00000000       0000111122 367999999


Q ss_pred             EEEe-CCCCeEEEEecCCcEEEEECCCC-ceeeee--------eeCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCC
Q 036314          191 SVVW-PQQETIYSASWDHSVRTWDVEMG-KDLSDI--------FCGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPG  260 (347)
Q Consensus       191 ~~~~-~~~~~l~s~s~dg~v~vwd~~~~-~~~~~~--------~~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~  260 (347)
                      +++| ++++.|+++ .|++|++||++.. ..+..+        .+...+.+++++|++..+|++|+.|+.|++||++...
T Consensus       182 ~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~  260 (447)
T 3dw8_B          182 SISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASA  260 (447)
T ss_dssp             EEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCS
T ss_pred             EEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCc
Confidence            9998 577788888 8999999999843 333321        1234689999988765799999999999999998643


Q ss_pred             C-CCCeEEecCCCC------------CeeEEEeCCCCCeEEEEEeCCCcEEEEEcCC-CccceeecCCCCe---------
Q 036314          261 T-SAPVFQFSSHNS------------WISACKWHNKSWFHLISASYDGKVMLWDLRT-AWPLSVIDSHKDK---------  317 (347)
Q Consensus       261 ~-~~~~~~~~~h~~------------~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~-~~~~~~~~~h~~~---------  317 (347)
                      . ......+.+|..            .|.+++|+|++. +|++++. +.|++||++. ++++..+.+|...         
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~  338 (447)
T 3dw8_B          261 LCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGR-YMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYE  338 (447)
T ss_dssp             SSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSS-EEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHH
T ss_pred             cccceeeEeccCCCccccccccccCceEEEEEECCCCC-EEEEeeC-CeEEEEeCCCCccccceeecccccccccccccc
Confidence            1 112567778876            899999999986 5888888 9999999997 8888889888642         


Q ss_pred             ------EEEEeecC-CCEEEEccCCceEEEeecc
Q 036314          318 ------VLCADWWR-GDSVISGGVDSKLCVSSGV  344 (347)
Q Consensus       318 ------v~~~~~~~-~~~l~s~s~D~~v~vw~~~  344 (347)
                            +..++|+| +++|++|+.|++|+||+..
T Consensus       339 ~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~  372 (447)
T 3dw8_B          339 NDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRN  372 (447)
T ss_dssp             TSGGGCCCCEEECTTSSEEEEECSTTEEEEEETT
T ss_pred             ccccccceEEEECCCCCEEEEeccCCEEEEEEcC
Confidence                  23489975 6789999999999999865

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.3e-31  Score=236.70  Aligned_cols=256  Identities=15%  Similarity=0.172  Sum_probs=208.6

Q ss_pred             CCCcCCceeeccCC-CCCEEEEEecCCeEEEEcCC-CeEEEEeeccCCceEEEEEeecCCCceEEEEEccCC-----CcE
Q 036314           20 PSLHDDWVSAVDGS-NPGFILTGCYDNLGRVWKAG-GVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKD-----QTL   92 (347)
Q Consensus        20 ~~~h~~~v~~~~~~-~~~~l~sg~~d~~i~iw~~~-~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~D-----g~v   92 (347)
                      ..+|...|++++++ ++.+|++++.|++|++||.. +.++..+. |...|.++.|+|++    ..|++++.+     +.|
T Consensus        70 ~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~----~~l~~~~~~~~~~~g~i  144 (369)
T 3zwl_B           70 LDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCG----NYFLAILDNVMKNPGSI  144 (369)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTS----SEEEEEECCBTTBCCEE
T ss_pred             hhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCC----CEEEEecCCccCCCCEE
Confidence            45799999999998 46799999999999999975 66766666 88899999999854    368888888     999


Q ss_pred             EEEeccccccccCcc--ccceeeeeecccc--ceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCc
Q 036314           93 RLWKFDAEELVNHPK--KIRSFKILRGHKA--SVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQ  168 (347)
Q Consensus        93 ~~wd~~~~~~~~~~~--~~~~~~~~~~h~~--~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~  168 (347)
                      ++||+...+......  .......+..|..  .+.+++|+|+++++++++.|+.|++||+.+.                 
T Consensus       145 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-----------------  207 (369)
T 3zwl_B          145 NIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNN-----------------  207 (369)
T ss_dssp             EEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTT-----------------
T ss_pred             EEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCC-----------------
Confidence            999997654322111  1123345667776  8999999999999999999999999998752                 


Q ss_pred             cccccccccccccccCCccceEEEEe-CCCCeEEEEecCCcEEEEECCCCceeeeeeeCeeeEEEEeeCCCCcEEEEecC
Q 036314          169 VEEPQLEGEAISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEGSALIAAGGS  247 (347)
Q Consensus       169 ~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~  247 (347)
                             ......+..|...|.++.| +++.+|++++.|+.|++||+++++.+..+.....+.++.+++++ ..+++++.
T Consensus       208 -------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~  279 (369)
T 3zwl_B          208 -------YEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETDCPLNTAVITPLK-EFIILGGG  279 (369)
T ss_dssp             -------TEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSS-SEEEEEEC
T ss_pred             -------cEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeecCCCCceeEEecCCC-ceEEEeec
Confidence                   1234566778899999998 57788999999999999999999888888777788899997665 56677777


Q ss_pred             CC--------------cEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccce
Q 036314          248 DP--------------ILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLS  309 (347)
Q Consensus       248 d~--------------~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~  309 (347)
                      ++              .+++||+...   .+...+.+|...|.+++|+|++. +|++++.||.|++||++++....
T Consensus       280 ~~~~~~~~~~~~~~~~~i~~~d~~~~---~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~dg~v~iw~~~~~~~~~  351 (369)
T 3zwl_B          280 QEAKDVTTTSANEGKFEARFYHKIFE---EEIGRVQGHFGPLNTVAISPQGT-SYASGGEDGFIRLHHFEKSYFDF  351 (369)
T ss_dssp             CC-------------CEEEEEETTTC---CEEEEEECCSSCEEEEEECTTSS-EEEEEETTSEEEEEEECHHHHTC
T ss_pred             CCCceEEEEecCCCcceeEEEecCCC---cchhheecccCcEEEEEECCCCC-EEEEEcCCCeEEEEECccccchh
Confidence            77              8999998753   34678889999999999999986 69999999999999998764433

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=6.4e-31  Score=242.33  Aligned_cols=231  Identities=23%  Similarity=0.449  Sum_probs=194.0

Q ss_pred             eeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeC
Q 036314           60 LEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSW  139 (347)
Q Consensus        60 l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~  139 (347)
                      ..+|...|.++.+.  +    ..|++|+.||+|++||+.+++         ....+.+|..+|.+++|  +++++++|+.
T Consensus       129 ~~~~~~~v~~~~~d--~----~~l~~g~~dg~i~iwd~~~~~---------~~~~~~~h~~~v~~l~~--~~~~l~sg~~  191 (435)
T 1p22_A          129 RSETSKGVYCLQYD--D----QKIVSGLRDNTIKIWDKNTLE---------CKRILTGHTGSVLCLQY--DERVIITGSS  191 (435)
T ss_dssp             CCSSCCCEEEEECC--S----SEEEEEESSSCEEEEESSSCC---------EEEEECCCSSCEEEEEC--CSSEEEEEET
T ss_pred             ccCCCCcEEEEEEC--C----CEEEEEeCCCeEEEEeCCCCe---------EEEEEcCCCCcEEEEEE--CCCEEEEEcC
Confidence            34566779988772  2    369999999999999987654         45678899999999998  7889999999


Q ss_pred             CCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEeCCCCeEEEEecCCcEEEEECCCCce
Q 036314          140 DCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWPQQETIYSASWDHSVRTWDVEMGKD  219 (347)
Q Consensus       140 Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~dg~v~vwd~~~~~~  219 (347)
                      ||+|++||+.++                         +.+..+.+|...|.++.|. ++.+++++.||+|++||++++..
T Consensus       192 dg~i~vwd~~~~-------------------------~~~~~~~~h~~~v~~l~~~-~~~l~s~s~dg~i~vwd~~~~~~  245 (435)
T 1p22_A          192 DSTVRVWDVNTG-------------------------EMLNTLIHHCEAVLHLRFN-NGMMVTCSKDRSIAVWDMASPTD  245 (435)
T ss_dssp             TSCEEEEESSSC-------------------------CEEEEECCCCSCEEEEECC-TTEEEEEETTSCEEEEECSSSSC
T ss_pred             CCeEEEEECCCC-------------------------cEEEEEcCCCCcEEEEEEc-CCEEEEeeCCCcEEEEeCCCCCC
Confidence            999999998754                         2355677899999999985 46899999999999999988765


Q ss_pred             ee---eee-eCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCC
Q 036314          220 LS---DIF-CGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDG  295 (347)
Q Consensus       220 ~~---~~~-~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~  295 (347)
                      ..   .+. +...+.++++   ++..+++|+.|+.|++||++..   ..+..+.+|...|.++.|++   .+|++|+.|+
T Consensus       246 ~~~~~~~~~~~~~v~~~~~---~~~~l~s~~~dg~i~vwd~~~~---~~~~~~~~~~~~v~~~~~~~---~~l~~g~~dg  316 (435)
T 1p22_A          246 ITLRRVLVGHRAAVNVVDF---DDKYIVSASGDRTIKVWNTSTC---EFVRTLNGHKRGIACLQYRD---RLVVSGSSDN  316 (435)
T ss_dssp             CEEEEEECCCSSCEEEEEE---ETTEEEEEETTSEEEEEETTTC---CEEEEEECCSSCEEEEEEET---TEEEEEETTS
T ss_pred             ceeeeEecCCCCcEEEEEe---CCCEEEEEeCCCeEEEEECCcC---cEEEEEcCCCCcEEEEEeCC---CEEEEEeCCC
Confidence            42   222 2346778887   3458899999999999999753   34778889999999999953   3699999999


Q ss_pred             cEEEEEcCCCccceeecCCCCeEEEEeecCCCEEEEccCCceEEEeec
Q 036314          296 KVMLWDLRTAWPLSVIDSHKDKVLCADWWRGDSVISGGVDSKLCVSSG  343 (347)
Q Consensus       296 ~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~D~~v~vw~~  343 (347)
                      .|++||+++++.+.++.+|.+.|.++.| ++.+|++|+.||+|+||+.
T Consensus       317 ~i~iwd~~~~~~~~~~~~h~~~v~~~~~-~~~~l~sg~~dg~i~vwd~  363 (435)
T 1p22_A          317 TIRLWDIECGACLRVLEGHEELVRCIRF-DNKRIVSGAYDGKIKVWDL  363 (435)
T ss_dssp             CEEEEETTTCCEEEEECCCSSCEEEEEC-CSSEEEEEETTSCEEEEEH
T ss_pred             eEEEEECCCCCEEEEEeCCcCcEEEEEe-cCCEEEEEeCCCcEEEEEC
Confidence            9999999999999999999999999999 7889999999999999985

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=2.1e-31  Score=242.91  Aligned_cols=246  Identities=15%  Similarity=0.168  Sum_probs=192.4

Q ss_pred             CCCCcCCceeeccCCC--CCEEEEEecCCeEEEEcCC-C-------eEEEEeeccCCceEEEEEeecCCCceEEEEEccC
Q 036314           19 EPSLHDDWVSAVDGSN--PGFILTGCYDNLGRVWKAG-G-------VCTHILEGHCGAVSSVNIIKSDGLKYVTVATASK   88 (347)
Q Consensus        19 ~~~~h~~~v~~~~~~~--~~~l~sg~~d~~i~iw~~~-~-------~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~   88 (347)
                      ...+|.+.|+++++++  +.+|++|+.|++|++|+.. +       ..+..+.+|...|.+++|+|++.   ..|++++.
T Consensus        76 ~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~---~~l~s~~~  152 (402)
T 2aq5_A           76 LVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQ---NVLLSAGC  152 (402)
T ss_dssp             CBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBT---TEEEEEET
T ss_pred             eEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCC---CEEEEEcC
Confidence            3568999999999874  5699999999999999974 3       45678999999999999999642   36999999


Q ss_pred             CCcEEEEeccccccccCccccceeeee--eccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCC
Q 036314           89 DQTLRLWKFDAEELVNHPKKIRSFKIL--RGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGN  166 (347)
Q Consensus        89 Dg~v~~wd~~~~~~~~~~~~~~~~~~~--~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~  166 (347)
                      |++|++||+.+++         ....+  .+|...|.+++|+|++++|++++.|++|++||+.+.               
T Consensus       153 dg~i~iwd~~~~~---------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~---------------  208 (402)
T 2aq5_A          153 DNVILVWDVGTGA---------AVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKG---------------  208 (402)
T ss_dssp             TSCEEEEETTTTE---------EEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTT---------------
T ss_pred             CCEEEEEECCCCC---------ccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCC---------------
Confidence            9999999998654         34556  689999999999999999999999999999998753               


Q ss_pred             Cccccccccccccccc-cCCccc-eEEEEe-CCCCeEEEE---ecCCcEEEEECCCCce-eeee--eeCeeeEEEEeeCC
Q 036314          167 NQVEEPQLEGEAISTL-VGHTQC-VSSVVW-PQQETIYSA---SWDHSVRTWDVEMGKD-LSDI--FCGKALNCIDIGGE  237 (347)
Q Consensus       167 ~~~~~~~~~~~~~~~~-~~h~~~-v~~~~~-~~~~~l~s~---s~dg~v~vwd~~~~~~-~~~~--~~~~~~~~~~~~~~  237 (347)
                                ..+..+ .+|... +..+.| +++..|+++   +.|+.|++||++++.. +...  .....+.++.++++
T Consensus       209 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~  278 (402)
T 2aq5_A          209 ----------TVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPD  278 (402)
T ss_dssp             ----------EEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETT
T ss_pred             ----------ceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCC
Confidence                      223344 566655 777777 466667777   6899999999988654 2222  23456788999887


Q ss_pred             CCcEEEEecCCCcEEEEeCCCCCCCCCeEEecC--CCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCc
Q 036314          238 GSALIAAGGSDPILRIWDPRKPGTSAPVFQFSS--HNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAW  306 (347)
Q Consensus       238 ~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~--h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~  306 (347)
                      +..++++|+.|+.|++||++....  ....+..  |...|.+++|+|++.. ++  +.|+.+++|++.++.
T Consensus       279 ~~~l~~~g~~dg~i~i~d~~~~~~--~~~~l~~~~~~~~v~~~~~sp~~~~-~~--s~~~~~~~~~l~~~~  344 (402)
T 2aq5_A          279 TNIVYLCGKGDSSIRYFEITSEAP--FLHYLSMFSSKESQRGMGYMPKRGL-EV--NKCEIARFYKLHERK  344 (402)
T ss_dssp             TTEEEEEETTCSCEEEEEECSSTT--CEEEEEEECCSSCCSEEEECCGGGS-CG--GGTEEEEEEEEETTE
T ss_pred             CCEEEEEEcCCCeEEEEEecCCCc--ceEeecccccCCcccceEEeccccc-ce--ecceeEEEEEcCCCc
Confidence            765556777899999999975432  1333333  5689999999999854 44  467799999998754

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=100.00  E-value=8.3e-31  Score=228.15  Aligned_cols=256  Identities=13%  Similarity=0.164  Sum_probs=172.0

Q ss_pred             EEEEEecCCeEEEEcC-CC---eEEEEeeccCCceEEEEEeecCCC------------ceEEEEEccCCCcEEEEecccc
Q 036314           37 FILTGCYDNLGRVWKA-GG---VCTHILEGHCGAVSSVNIIKSDGL------------KYVTVATASKDQTLRLWKFDAE  100 (347)
Q Consensus        37 ~l~sg~~d~~i~iw~~-~~---~~~~~l~~h~~~V~~v~~~~~~~~------------~~~~l~s~s~Dg~v~~wd~~~~  100 (347)
                      -++++|. .+|++|++ .+   .+++++.+|+.+|..|.+.|+...            ....|+.+++|..++.|.+   
T Consensus        56 ~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~---  131 (356)
T 2w18_A           56 CIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLL---  131 (356)
T ss_dssp             EEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEEE---
T ss_pred             EEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEEE---
Confidence            5777775 58999996 46   688999999999999999884321            0112222222222222221   


Q ss_pred             ccccCccccceeeeeeccccceEEEEEeCCCCEEEEee--CCCcEEEEecCCCCCCCccceeeeccCCCccccccccccc
Q 036314          101 ELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGS--WDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEA  178 (347)
Q Consensus       101 ~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs--~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (347)
                                    -.+|...|.++   ++++++.+++  .|++|++|++...                        +..
T Consensus       132 --------------s~g~~~~v~~l---~~g~lv~ss~~g~d~~V~~~~~s~d------------------------G~~  170 (356)
T 2w18_A          132 --------------KSGNIKAVLGL---TKRRLVSSSGTLSDQQVEVMTFAED------------------------GGG  170 (356)
T ss_dssp             --------------EEEEEEEEEEE---TTTEEEEEESSSTTCEEEEEEECTT------------------------SCE
T ss_pred             --------------eCCCeEEEEec---CCCcEEEecccCCCCcEEEEEECCC------------------------Cce
Confidence                          13455445444   4555555533  5788888877421                        233


Q ss_pred             cccccCCccceEEEEe-C---CCCeEEEEecCCcEEEEECCCCceeeeeeeCe----eeEEEEeeCCCCcE---------
Q 036314          179 ISTLVGHTQCVSSVVW-P---QQETIYSASWDHSVRTWDVEMGKDLSDIFCGK----ALNCIDIGGEGSAL---------  241 (347)
Q Consensus       179 ~~~~~~h~~~v~~~~~-~---~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~----~~~~~~~~~~~~~~---------  241 (347)
                      +..+.+|...+..++| +   +++.|+|++.|++|+|||+++++.++++..+.    .+.+++|+|++..+         
T Consensus       171 ~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~  250 (356)
T 2w18_A          171 KENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAK  250 (356)
T ss_dssp             EEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC-----
T ss_pred             eeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCc
Confidence            4455677777777766 3   45789999999999999999999988886322    35667787754322         


Q ss_pred             --EEEecCCCcEEEEeCCCCCCCCCeEEe-----cCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecCC
Q 036314          242 --IAAGGSDPILRIWDPRKPGTSAPVFQF-----SSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSH  314 (347)
Q Consensus       242 --la~~~~d~~i~iwd~~~~~~~~~~~~~-----~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h  314 (347)
                        +++|+.|++|++||+...   ..+..+     .+|...+.+..++  + .++|+++.|++|+|||+++++.++++.+|
T Consensus       251 w~laSGs~D~tIklWd~~tg---k~l~v~~~~~p~Gh~~~~lsg~~s--g-~~lASgS~DgTIkIWDl~tGk~l~tL~gH  324 (356)
T 2w18_A          251 ESESLRSPVFQLIVINPKTT---LSVGVMLYCLPPGQAGRFLEGDVK--D-HCAAAILTSGTIAIWDLLLGQCTALLPPV  324 (356)
T ss_dssp             -------CCEEEEEEETTTT---EEEEEEEECCCTTCCCCEEEEEEE--T-TEEEEEETTSCEEEEETTTCSEEEEECCC
T ss_pred             ceeeccCCCcEEEEEECCCC---EEEEEEEeeccCCCcceeEccccC--C-CEEEEEcCCCcEEEEECCCCcEEEEecCC
Confidence              367889999999998642   222222     4676665555554  3 36999999999999999999999999999


Q ss_pred             CCeEE-EEeecC-CCEEEEccCCceEEEeec
Q 036314          315 KDKVL-CADWWR-GDSVISGGVDSKLCVSSG  343 (347)
Q Consensus       315 ~~~v~-~~~~~~-~~~l~s~s~D~~v~vw~~  343 (347)
                      .+.+. +++|+| |++|+||+.|++|+||+.
T Consensus       325 ~~~vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          325 SDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             --CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             CCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence            88766 589986 778999999999999983

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.98  E-value=2.4e-30  Score=231.76  Aligned_cols=252  Identities=12%  Similarity=0.178  Sum_probs=194.2

Q ss_pred             CeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCE
Q 036314           54 GVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNM  133 (347)
Q Consensus        54 ~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~  133 (347)
                      ...++.+.+|.+.|.+++|+|+.. ++..|++|+.||+|++||+....       ......+.+|..+|.+++|+|++++
T Consensus        29 ~~~~~~~~~h~~~v~~~~~~~~~~-~g~~l~~~~~dg~i~iw~~~~~~-------~~~~~~~~~h~~~v~~~~~~~~~~~  100 (368)
T 3mmy_A           29 MKDIEVTSSPDDSIGCLSFSPPTL-PGNFLIAGSWANDVRCWEVQDSG-------QTIPKAQQMHTGPVLDVCWSDDGSK  100 (368)
T ss_dssp             TCCEECSSCCSSCEEEEEECCTTS-SSEEEEEEETTSEEEEEEECTTS-------CEEEEEEEECSSCEEEEEECTTSSE
T ss_pred             cceeEeccCCCCceEEEEEcCCCC-CceEEEEECCCCcEEEEEcCCCC-------ceeEEEeccccCCEEEEEECcCCCE
Confidence            345678899999999999999531 13589999999999999997521       1123567889999999999999999


Q ss_pred             EEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEe--C-CCCeEEEEecCCcEE
Q 036314          134 VCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW--P-QQETIYSASWDHSVR  210 (347)
Q Consensus       134 l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~--~-~~~~l~s~s~dg~v~  210 (347)
                      |++++.|++|++||+.+..                          ...+.+|...|.++.|  . ++..|++++.|+.|+
T Consensus       101 l~s~~~dg~v~iwd~~~~~--------------------------~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~  154 (368)
T 3mmy_A          101 VFTASCDKTAKMWDLSSNQ--------------------------AIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLK  154 (368)
T ss_dssp             EEEEETTSEEEEEETTTTE--------------------------EEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEE
T ss_pred             EEEEcCCCcEEEEEcCCCC--------------------------ceeeccccCceEEEEEEeCCCCCEEEEccCCCcEE
Confidence            9999999999999987532                          1124568899999998  4 566799999999999


Q ss_pred             EEECCCCceeeeeeeCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEe-cCCCCCeeEEEeCCCC---Ce
Q 036314          211 TWDVEMGKDLSDIFCGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQF-SSHNSWISACKWHNKS---WF  286 (347)
Q Consensus       211 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~-~~h~~~v~~v~~s~~~---~~  286 (347)
                      +||+++++.+..+.....+.++.+.++   .+++++.++.+++||++....  ....+ ..+...+.++.+.++.   ..
T Consensus       155 vwd~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (368)
T 3mmy_A          155 FWDTRSSNPMMVLQLPERCYCADVIYP---MAVVATAERGLIVYQLENQPS--EFRRIESPLKHQHRCVAIFKDKQNKPT  229 (368)
T ss_dssp             EECSSCSSCSEEEECSSCEEEEEEETT---EEEEEEGGGCEEEEECSSSCE--EEEECCCSCSSCEEEEEEEECTTSCEE
T ss_pred             EEECCCCcEEEEEecCCCceEEEecCC---eeEEEeCCCcEEEEEeccccc--hhhhccccccCCCceEEEcccCCCCCC
Confidence            999999988887776666677776543   567778899999999975321  11111 1223334444443332   12


Q ss_pred             EEEEEeCCCcEEEEEcCCC---ccceeecCCCC------------eEEEEeecC-CCEEEEccCCceEEEeecc
Q 036314          287 HLISASYDGKVMLWDLRTA---WPLSVIDSHKD------------KVLCADWWR-GDSVISGGVDSKLCVSSGV  344 (347)
Q Consensus       287 ~l~s~s~D~~i~lwd~~~~---~~~~~~~~h~~------------~v~~~~~~~-~~~l~s~s~D~~v~vw~~~  344 (347)
                      .+++++.|+.|++||++..   ..+..+.+|..            .|.+++|+| +++|++++.|+.|+||+..
T Consensus       230 ~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~  303 (368)
T 3mmy_A          230 GFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKD  303 (368)
T ss_dssp             EEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETT
T ss_pred             eEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECC
Confidence            3999999999999999987   45667788876            699999986 6689999999999999965

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.98  E-value=4.8e-29  Score=226.04  Aligned_cols=263  Identities=11%  Similarity=0.058  Sum_probs=203.8

Q ss_pred             CEEEEEecCCeEEEEcCC-CeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeee
Q 036314           36 GFILTGCYDNLGRVWKAG-GVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKI  114 (347)
Q Consensus        36 ~~l~sg~~d~~i~iw~~~-~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~  114 (347)
                      .++++++.|++|++||.. +++...+.+|.. +.+++|+|++.   ..+++++.|++|++||+.++++         ...
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~~-~~~~~~s~dg~---~l~~~~~~d~~i~v~d~~~~~~---------~~~   69 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSNKVTATIPVGSN-PMGAVISPDGT---KVYVANAHSNDVSIIDTATNNV---------IAT   69 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEECSSS-EEEEEECTTSS---EEEEEEGGGTEEEEEETTTTEE---------EEE
T ss_pred             EEEEEcCCCCEEEEEECCCCeEEEEeecCCC-cceEEECCCCC---EEEEECCCCCeEEEEECCCCeE---------EEE
Confidence            368899999999999975 677778887755 89999998543   2457888999999999977643         334


Q ss_pred             eeccccceEEEEEeCCCCEEE-EeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEE
Q 036314          115 LRGHKASVHSIAAETSGNMVC-SGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVV  193 (347)
Q Consensus       115 ~~~h~~~V~~v~~s~~~~~l~-sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~  193 (347)
                      +..|. .+.+++|+|++++++ +++.|++|++||+.+..                         .+..+..| ..+.+++
T Consensus        70 ~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~-------------------------~~~~~~~~-~~~~~~~  122 (391)
T 1l0q_A           70 VPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNT-------------------------VAGTVKTG-KSPLGLA  122 (391)
T ss_dssp             EECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTE-------------------------EEEEEECS-SSEEEEE
T ss_pred             EECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCe-------------------------EEEEEeCC-CCcceEE
Confidence            44444 899999999999775 56678999999987542                         12223333 3567888


Q ss_pred             e-CCCCeE-EEEecCCcEEEEECCCCceeeeeeeCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCC
Q 036314          194 W-PQQETI-YSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSH  271 (347)
Q Consensus       194 ~-~~~~~l-~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h  271 (347)
                      | ++++.+ ++++.|+.|++||+++++.+..+..+..+.++.+++++..++++++.++.|++||++..   .....+ .+
T Consensus       123 ~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~---~~~~~~-~~  198 (391)
T 1l0q_A          123 LSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTN---SVIDTV-KV  198 (391)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT---EEEEEE-EC
T ss_pred             ECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCC---eEEEEE-ec
Confidence            8 566766 68888999999999998887777666677889998877666678889999999998753   223333 35


Q ss_pred             CCCeeEEEeCCCCCeEEEEEe---CCCcEEEEEcCCCccceeecCCCCeEEEEeecC-CCEE-EEccCCceEEEeecc
Q 036314          272 NSWISACKWHNKSWFHLISAS---YDGKVMLWDLRTAWPLSVIDSHKDKVLCADWWR-GDSV-ISGGVDSKLCVSSGV  344 (347)
Q Consensus       272 ~~~v~~v~~s~~~~~~l~s~s---~D~~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~l-~s~s~D~~v~vw~~~  344 (347)
                      ...+.+++|+|++.+ |++++   .|+.|++||+++++.+..+..|. .+.+++|++ |++| ++++.|++|++|+..
T Consensus       199 ~~~~~~~~~~~~g~~-l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~  274 (391)
T 1l0q_A          199 EAAPSGIAVNPEGTK-AYVTNVDKYFNTVSMIDTGTNKITARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTA  274 (391)
T ss_dssp             SSEEEEEEECTTSSE-EEEEEECSSCCEEEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred             CCCccceEECCCCCE-EEEEecCcCCCcEEEEECCCCeEEEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECC
Confidence            668899999999976 55555   78999999999988888887765 578899985 6565 788999999999864

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.98  E-value=2.2e-29  Score=231.33  Aligned_cols=275  Identities=10%  Similarity=0.014  Sum_probs=212.0

Q ss_pred             CceeeccCCCC-CEEEEEecCCeEEEEcCC-CeEEE-----EeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEec
Q 036314           25 DWVSAVDGSNP-GFILTGCYDNLGRVWKAG-GVCTH-----ILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKF   97 (347)
Q Consensus        25 ~~v~~~~~~~~-~~l~sg~~d~~i~iw~~~-~~~~~-----~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~   97 (347)
                      ..+.+++++++ .++++++.|++|++||.. +...+     .+.+|.+.|.+++|+++    +..+++++.|++|++||+
T Consensus       123 ~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~~~s~~~d~~v~~~d~  198 (433)
T 3bws_A          123 FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEH----NELWVSQMQANAVHVFDL  198 (433)
T ss_dssp             SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGG----TEEEEEEGGGTEEEEEET
T ss_pred             CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCC----CEEEEEECCCCEEEEEEC
Confidence            44567787754 478888889999999975 56655     45589999999999763    357899999999999998


Q ss_pred             cccccccCccccceeeeeeccccceEEEEEeCCCCEEE-EeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccc
Q 036314           98 DAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVC-SGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEG  176 (347)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~-sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (347)
                      .+++         ....+..|...+.+++|+|+++.++ +++.|++|++||+.+..                        
T Consensus       199 ~~~~---------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~------------------------  245 (433)
T 3bws_A          199 KTLA---------YKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKL------------------------  245 (433)
T ss_dssp             TTCC---------EEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTE------------------------
T ss_pred             CCce---------EEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCc------------------------
Confidence            7654         3456678999999999999998775 55689999999987532                        


Q ss_pred             cccccccCCccceEEEEe-CCCCeEEEEe--------cCCcEEEEECCCCceeeeeeeCeeeEEEEeeCCCCcEEEEecC
Q 036314          177 EAISTLVGHTQCVSSVVW-PQQETIYSAS--------WDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEGSALIAAGGS  247 (347)
Q Consensus       177 ~~~~~~~~h~~~v~~~~~-~~~~~l~s~s--------~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~  247 (347)
                       .+..+..+ ..+.+++| |+++.+++++        .|+.|++||+++++.+..+.....+.++++++++..++++++.
T Consensus       246 -~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~  323 (433)
T 3bws_A          246 -EIRKTDKI-GLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMC  323 (433)
T ss_dssp             -EEEECCCC-SEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETT
T ss_pred             -EEEEecCC-CCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecC
Confidence             12223332 34778887 5777888887        4889999999988776666555567788998877677788899


Q ss_pred             CCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeC---------------CCcEEEEEcCCCccceeec
Q 036314          248 DPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASY---------------DGKVMLWDLRTAWPLSVID  312 (347)
Q Consensus       248 d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~---------------D~~i~lwd~~~~~~~~~~~  312 (347)
                      |+.|++||++..   .....+ .+...+.+++|+|++.. |++++.               ||.|++||+++++.+..+.
T Consensus       324 ~~~v~v~d~~~~---~~~~~~-~~~~~~~~~~~s~dg~~-l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~  398 (433)
T 3bws_A          324 CSKIEVYDLKEK---KVQKSI-PVFDKPNTIALSPDGKY-LYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWE  398 (433)
T ss_dssp             TTEEEEEETTTT---EEEEEE-ECSSSEEEEEECTTSSE-EEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEE
T ss_pred             CCEEEEEECCCC---cEEEEe-cCCCCCCeEEEcCCCCE-EEEEecCCCccccccccccccceEEEEEECCCCcEEEEec
Confidence            999999998742   223444 36778999999999875 555554               5799999999988888777


Q ss_pred             CCCCeEEEEeecC-CCEEEEcc-CCceEEEeecc
Q 036314          313 SHKDKVLCADWWR-GDSVISGG-VDSKLCVSSGV  344 (347)
Q Consensus       313 ~h~~~v~~~~~~~-~~~l~s~s-~D~~v~vw~~~  344 (347)
                      . ...+.+++|+| |++|++++ .|++|++|+..
T Consensus       399 ~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~  431 (433)
T 3bws_A          399 A-GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRD  431 (433)
T ss_dssp             C-SSSEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred             C-CCCCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence            6 45789999985 66777665 59999999854

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.98  E-value=3.8e-30  Score=231.80  Aligned_cols=244  Identities=15%  Similarity=0.114  Sum_probs=177.5

Q ss_pred             CCCcCCceeeccCCCCCEEEEE-----------ecCCeEEEEcCC--CeEEE---E-----eeccCCceEEEEEeecCCC
Q 036314           20 PSLHDDWVSAVDGSNPGFILTG-----------CYDNLGRVWKAG--GVCTH---I-----LEGHCGAVSSVNIIKSDGL   78 (347)
Q Consensus        20 ~~~h~~~v~~~~~~~~~~l~sg-----------~~d~~i~iw~~~--~~~~~---~-----l~~h~~~V~~v~~~~~~~~   78 (347)
                      +.+|++.|.+++++ +..+++|           +.|+++|+|+..  .....   .     ...+...+.+++|+|++..
T Consensus        69 l~~~~~~v~s~~~~-~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~  147 (365)
T 4h5i_A           69 LEDNDDSPTAIDAS-KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTV  147 (365)
T ss_dssp             CCTTSCCCCEEEEE-TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSC
T ss_pred             ccCCCCceEEEEeC-CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCE
Confidence            56788899988864 3455554           467889999853  22211   1     1234456889999996542


Q ss_pred             ceEEEEEccCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccc
Q 036314           79 KYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQV  158 (347)
Q Consensus        79 ~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~  158 (347)
                        ..+++++.|++||+||+.+++         +...+ .|...|.+++|+|||+++++++.|+ +++|+..++..     
T Consensus       148 --la~as~~~d~~i~iwd~~~~~---------~~~~~-~~~~~V~~v~fspdg~~l~s~s~~~-~~~~~~~~~~~-----  209 (365)
T 4h5i_A          148 --AAIASSKVPAIMRIIDPSDLT---------EKFEI-ETRGEVKDLHFSTDGKVVAYITGSS-LEVISTVTGSC-----  209 (365)
T ss_dssp             --EEEEESCSSCEEEEEETTTTE---------EEEEE-ECSSCCCEEEECTTSSEEEEECSSC-EEEEETTTCCE-----
T ss_pred             --EEEEECCCCCEEEEeECCCCc---------EEEEe-CCCCceEEEEEccCCceEEecccee-EEEEEeccCcc-----
Confidence              234677789999999998764         23344 4778899999999999999998665 55555443211     


Q ss_pred             eeeeccCCCccccccccccccccccCCccceEEEEe-CCCCeEEEEecCC----cEEEEECCCCcee----eeee-eCee
Q 036314          159 SIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW-PQQETIYSASWDH----SVRTWDVEMGKDL----SDIF-CGKA  228 (347)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~l~s~s~dg----~v~vwd~~~~~~~----~~~~-~~~~  228 (347)
                                        .......+|...|.+++| |+++.+++++.|+    .+++||+......    ..+. ....
T Consensus       210 ------------------~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  271 (365)
T 4h5i_A          210 ------------------IARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKG  271 (365)
T ss_dssp             ------------------EEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSC
T ss_pred             ------------------eeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCC
Confidence                              011234568888999998 6788899999888    6888998765432    1222 2346


Q ss_pred             eEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEE-ecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCC
Q 036314          229 LNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQ-FSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTA  305 (347)
Q Consensus       229 ~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~-~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~  305 (347)
                      +.+++|+|+ +.+||+|+.|++|+|||++..   .++.. +.+|...|.+++|+||+. +|||||.|++|||||+..+
T Consensus       272 V~~~~~Spd-g~~lasgs~D~~V~iwd~~~~---~~~~~~~~gH~~~V~~v~fSpdg~-~laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          272 ITSMDVDMK-GELAVLASNDNSIALVKLKDL---SMSKIFKQAHSFAITEVTISPDST-YVASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             EEEEEECTT-SCEEEEEETTSCEEEEETTTT---EEEEEETTSSSSCEEEEEECTTSC-EEEEEETTSEEEEEECCTT
T ss_pred             eEeEEECCC-CCceEEEcCCCEEEEEECCCC---cEEEEecCcccCCEEEEEECCCCC-EEEEEeCCCeEEEEEcCCC
Confidence            899999765 568999999999999998752   34555 478999999999999996 6999999999999999654

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.98  E-value=6.5e-30  Score=229.42  Aligned_cols=239  Identities=10%  Similarity=0.109  Sum_probs=175.1

Q ss_pred             EEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEE-
Q 036314           56 CTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMV-  134 (347)
Q Consensus        56 ~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l-  134 (347)
                      .+..+.+|.+.|.+++|+|++    ..|++|+.|+ +++|+++..+.         .  ...+...+..+++.++++.+ 
T Consensus        11 ~~~~~~~h~~~V~~v~fs~dg----~~la~g~~~~-~~iw~~~~~~~---------~--~~~~~~~~~~~~~~~~~~~~~   74 (355)
T 3vu4_A           11 PIVPENHVSNPVTDYEFNQDQ----SCLILSTLKS-FEIYNVHPVAH---------I--MSQEMRHLSKVRMLHRTNYVA   74 (355)
T ss_dssp             --------CCCCCEEEECTTS----SEEEEECSSE-EEEEEETTEEE---------E--EEEECSCCCEEEECTTSSEEE
T ss_pred             CccccccCCCceEEEEECCCC----CEEEEEcCCE-EEEEecCCcce---------e--eeeecCCeEEEEEcCCCCEEE
Confidence            445668899999999999954    3688888775 89999875432         1  11222357778888888766 


Q ss_pred             EEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEeCCCCeEEEEecCCcEEEEEC
Q 036314          135 CSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWPQQETIYSASWDHSVRTWDV  214 (347)
Q Consensus       135 ~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~dg~v~vwd~  214 (347)
                      ++++.|++|++||..++.                         .+..+. |...|.++.+... .++. ..|+.|++||+
T Consensus        75 ~~~~~d~~v~iWd~~~~~-------------------------~~~~~~-~~~~v~~v~~~~~-~~~~-~~~~~i~i~d~  126 (355)
T 3vu4_A           75 FVTGVKEVVHIWDDVKKQ-------------------------DVSRIK-VDAPVKDLFLSRE-FIVV-SYGDVISVFKF  126 (355)
T ss_dssp             EECSSTTEEEEEETTTTE-------------------------EEEEEE-CSSCEEEEEECSS-EEEE-EETTEEEEEES
T ss_pred             EEECCccEEEEEECCCCc-------------------------EEEEEE-CCCceEEEEEcCC-EEEE-EEcCEEEEEEC
Confidence            678889999999987542                         233333 4567888888654 3333 35889999999


Q ss_pred             CCC-ceeeeeeeCeeeEEEEeeCCCCcEEEE--ecCCCcEEEEeCCCCCC------------CCC-eEEecCCCCCeeEE
Q 036314          215 EMG-KDLSDIFCGKALNCIDIGGEGSALIAA--GGSDPILRIWDPRKPGT------------SAP-VFQFSSHNSWISAC  278 (347)
Q Consensus       215 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~la~--~~~d~~i~iwd~~~~~~------------~~~-~~~~~~h~~~v~~v  278 (347)
                      .++ +.+..+..  +....++.+   ..++.  |+.||.|++||++....            ..+ ...+.+|.+.|.++
T Consensus       127 ~~~~~~~~~~~~--~~~~~~~s~---~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~  201 (355)
T 3vu4_A          127 GNPWKRITDDIR--FGGVCEFSN---GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMV  201 (355)
T ss_dssp             STTCCBSSCCEE--EEEEEEEET---TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEE
T ss_pred             CCCceeeEEecc--CCceEEEEc---cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEE
Confidence            987 66665554  334445544   34444  68999999999975320            012 57789999999999


Q ss_pred             EeCCCCCeEEEEEeCCCc-EEEEEcCCCccceeec-C-CCCeEEEEeecC-CCEEEEccCCceEEEeecc
Q 036314          279 KWHNKSWFHLISASYDGK-VMLWDLRTAWPLSVID-S-HKDKVLCADWWR-GDSVISGGVDSKLCVSSGV  344 (347)
Q Consensus       279 ~~s~~~~~~l~s~s~D~~-i~lwd~~~~~~~~~~~-~-h~~~v~~~~~~~-~~~l~s~s~D~~v~vw~~~  344 (347)
                      +|+|++. +||+|+.|++ |+|||+++++.+.++. + |.+.|.+++|+| |++|++++.|++|+||+..
T Consensus       202 ~~s~~g~-~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~  270 (355)
T 3vu4_A          202 RLNRKSD-MVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIF  270 (355)
T ss_dssp             EECTTSS-EEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESS
T ss_pred             EECCCCC-EEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEcc
Confidence            9999985 6999999998 9999999999999997 6 999999999986 7789999999999999864

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.97  E-value=2.6e-29  Score=225.47  Aligned_cols=272  Identities=9%  Similarity=0.086  Sum_probs=186.8

Q ss_pred             CCCcCCceeeccCC-CCCEEEEEecCCeEEEEcCCC-eEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEec
Q 036314           20 PSLHDDWVSAVDGS-NPGFILTGCYDNLGRVWKAGG-VCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKF   97 (347)
Q Consensus        20 ~~~h~~~v~~~~~~-~~~~l~sg~~d~~i~iw~~~~-~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~   97 (347)
                      ...|.+.|++++|+ ++.+||+|+.|+ +++|+... .....  .+...+..+.+.+..+   ..+++++.|++|++||+
T Consensus        15 ~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~--~~~~~~~~~~~~~~~~---~~~~~~~~d~~v~iWd~   88 (355)
T 3vu4_A           15 ENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMS--QEMRHLSKVRMLHRTN---YVAFVTGVKEVVHIWDD   88 (355)
T ss_dssp             ----CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEE--EECSCCCEEEECTTSS---EEEEECSSTTEEEEEET
T ss_pred             cccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeee--eecCCeEEEEEcCCCC---EEEEEECCccEEEEEEC
Confidence            46799999999998 456888887665 78999753 33222  2223477777776443   24467888999999998


Q ss_pred             cccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCcccccccccc
Q 036314           98 DAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGE  177 (347)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (347)
                      .+++.         +..+. |..+|.+++|+++.  ++. ..|+.|++||+.+...                        
T Consensus        89 ~~~~~---------~~~~~-~~~~v~~v~~~~~~--~~~-~~~~~i~i~d~~~~~~------------------------  131 (355)
T 3vu4_A           89 VKKQD---------VSRIK-VDAPVKDLFLSREF--IVV-SYGDVISVFKFGNPWK------------------------  131 (355)
T ss_dssp             TTTEE---------EEEEE-CSSCEEEEEECSSE--EEE-EETTEEEEEESSTTCC------------------------
T ss_pred             CCCcE---------EEEEE-CCCceEEEEEcCCE--EEE-EEcCEEEEEECCCCce------------------------
Confidence            87643         33443 66789999998764  333 3488999999876410                        


Q ss_pred             ccccccCCccceEEEEeCCCCeEEE--EecCCcEEEEECCCCc----------------eeeeee-eCeeeEEEEeeCCC
Q 036314          178 AISTLVGHTQCVSSVVWPQQETIYS--ASWDHSVRTWDVEMGK----------------DLSDIF-CGKALNCIDIGGEG  238 (347)
Q Consensus       178 ~~~~~~~h~~~v~~~~~~~~~~l~s--~s~dg~v~vwd~~~~~----------------~~~~~~-~~~~~~~~~~~~~~  238 (347)
                      .+..+.. ...+.++.  . ..++.  ++.||.|++||++++.                .+..+. +...+.+++|+|+ 
T Consensus       132 ~~~~~~~-~~~~~~~s--~-~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~-  206 (355)
T 3vu4_A          132 RITDDIR-FGGVCEFS--N-GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRK-  206 (355)
T ss_dssp             BSSCCEE-EEEEEEEE--T-TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTT-
T ss_pred             eeEEecc-CCceEEEE--c-cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCC-
Confidence            1112221 12223332  2 55554  6899999999998765                133343 3457899999774 


Q ss_pred             CcEEEEecCCCc-EEEEeCCCCCCCCCeEEec-C-CCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccc--eeec-
Q 036314          239 SALIAAGGSDPI-LRIWDPRKPGTSAPVFQFS-S-HNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPL--SVID-  312 (347)
Q Consensus       239 ~~~la~~~~d~~-i~iwd~~~~~~~~~~~~~~-~-h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~--~~~~-  312 (347)
                      +.+||+|+.|++ |++||++..   ..+..+. + |...|.+++|+|++. +|++++.|++|++||++.+...  ..+. 
T Consensus       207 g~~l~s~s~d~~~v~iwd~~~~---~~~~~~~~g~h~~~v~~~~~s~~~~-~l~s~s~d~~v~iw~~~~~~~~~~~~~~~  282 (355)
T 3vu4_A          207 SDMVATCSQDGTIIRVFKTEDG---VLVREFRRGLDRADVVDMKWSTDGS-KLAVVSDKWTLHVFEIFNDQDNKRHALKG  282 (355)
T ss_dssp             SSEEEEEETTCSEEEEEETTTC---CEEEEEECTTCCSCEEEEEECTTSC-EEEEEETTCEEEEEESSCCSCCCSEETTT
T ss_pred             CCEEEEEeCCCCEEEEEECCCC---cEEEEEEcCCCCCcEEEEEECCCCC-EEEEEECCCEEEEEEccCCCCcccccccc
Confidence            578999999998 999999753   3466776 5 999999999999986 5999999999999999865321  1111 


Q ss_pred             --------------------CCCCeEEEEeecC-CCEEEEccCCceEEEeec
Q 036314          313 --------------------SHKDKVLCADWWR-GDSVISGGVDSKLCVSSG  343 (347)
Q Consensus       313 --------------------~h~~~v~~~~~~~-~~~l~s~s~D~~v~vw~~  343 (347)
                                          .+......++|++ |++|++++.||.+++|+.
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~  334 (355)
T 3vu4_A          283 WINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKV  334 (355)
T ss_dssp             TEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEE
T ss_pred             eeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence                                1112235678975 668999999999999974

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.6e-30  Score=240.17  Aligned_cols=267  Identities=10%  Similarity=0.020  Sum_probs=194.5

Q ss_pred             CCcCCCCCcCCceeeccCCCCCEEEEEecCCeEEEEcCCCeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEE
Q 036314           15 QKEEEPSLHDDWVSAVDGSNPGFILTGCYDNLGRVWKAGGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRL   94 (347)
Q Consensus        15 ~~~~~~~~h~~~v~~~~~~~~~~l~sg~~d~~i~iw~~~~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~   94 (347)
                      +..+...+|...|.+++|++++      .++++++|+..+.....+ +|+..|.+++|+|++.    .||+++.||+|++
T Consensus        43 ~~~~~l~gh~~~v~~V~FsPdg------~~~~~~~~~~~~~~~~~~-~~~~~V~~vawSPdG~----~LAs~s~dg~V~i  111 (588)
T 2j04_A           43 KYAKDINCNSKNLFHVKEFPLE------FENKLDFELAQQNGLLNS-QPVCYPRVCKPSPIDD----WMAVLSNNGNVSV  111 (588)
T ss_dssp             CCCSCCSSBGGGTEEEEEECCC------CCCTTTTSCCCSSCSSTT-SCSCCEEEEEECSSSS----CEEEEETTSCEEE
T ss_pred             cccceecCCCccEEEEEECCCC------CcceEEEEeCCCceEeec-CCCCcEEEEEECCCCC----EEEEEeCCCcEEE
Confidence            3334457999999999998765      677777777554332222 5688899999999554    6999999999999


Q ss_pred             EeccccccccCccccceeeeeecccc-----ceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCcc
Q 036314           95 WKFDAEELVNHPKKIRSFKILRGHKA-----SVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQV  169 (347)
Q Consensus        95 wd~~~~~~~~~~~~~~~~~~~~~h~~-----~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~  169 (347)
                      ||.+.           .+..+. |..     .|.+++|||||++|++|+.||+|+|||+.++.......           
T Consensus       112 wd~~~-----------~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~-----------  168 (588)
T 2j04_A          112 FKDNK-----------MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEF-----------  168 (588)
T ss_dssp             EETTE-----------EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCC-----------
T ss_pred             EeCCc-----------eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccc-----------
Confidence            99643           344556 665     49999999999999999999999999987642100000           


Q ss_pred             ccccccccccccc----cCCccceEEEEeCCCCeEEEEecCCcEEEEECCCCcee---eeee--eCeeeEEEEeeCCCCc
Q 036314          170 EEPQLEGEAISTL----VGHTQCVSSVVWPQQETIYSASWDHSVRTWDVEMGKDL---SDIF--CGKALNCIDIGGEGSA  240 (347)
Q Consensus       170 ~~~~~~~~~~~~~----~~h~~~v~~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~---~~~~--~~~~~~~~~~~~~~~~  240 (347)
                             -.+.++    .+|..+|.+++|+++. +++++.|+++++||+..+...   ..+.  +...+..++|+  + .
T Consensus       169 -------i~l~ti~~~~~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g-~  237 (588)
T 2j04_A          169 -------YFESSIRLSDAGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--D-Y  237 (588)
T ss_dssp             -------EEEEEEECSCTTCCCCEEEEEEETTE-EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--T-T
T ss_pred             -------eeeeeeecccccccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--C-C
Confidence                   012233    6688899999995444 899999999999999876632   3343  23468889997  3 5


Q ss_pred             EEEEecCCCcEEEEeCCCCCCCCCeEEec-CCCCCeeEEEe--CCCCCeEEEEEeCCCcEEEEEcCC------C------
Q 036314          241 LIAAGGSDPILRIWDPRKPGTSAPVFQFS-SHNSWISACKW--HNKSWFHLISASYDGKVMLWDLRT------A------  305 (347)
Q Consensus       241 ~la~~~~d~~i~iwd~~~~~~~~~~~~~~-~h~~~v~~v~~--s~~~~~~l~s~s~D~~i~lwd~~~------~------  305 (347)
                      .+|+++ +++|++||+...   . ...+. +|.+.|.+++|  +|++ ..|+++++||+ ++|..+.      +      
T Consensus       238 ~LASa~-~~tIkLWd~~~~---~-~~~~~~gh~~~V~~va~~~s~d~-~~La~a~edG~-klw~~d~~~~spd~~l~a~~  310 (588)
T 2j04_A          238 KVVLTC-PGYVHKIDLKNY---S-ISSLKTGSLENFHIIPLNHEKES-TILLMSNKTSY-KVLLEDELHVTADNIIAPYL  310 (588)
T ss_dssp             EEEEEC-SSEEEEEETTTT---E-EEEEECSCCSCCCEEEETTCSSC-EEEEECSSCEE-EEEESSSEEEECCCSSHHHH
T ss_pred             EEEEEe-CCeEEEEECCCC---e-EEEEEcCCCceEEEEEeeeCCCC-CEEEEEcCCCC-EEEeeccEEECCCceEEEEc
Confidence            778776 699999998742   1 22333 89999999999  9998 46999999999 9998631      1      


Q ss_pred             -----------ccceeecCCCCeEEEEeecC-CCEEEEccC
Q 036314          306 -----------WPLSVIDSHKDKVLCADWWR-GDSVISGGV  334 (347)
Q Consensus       306 -----------~~~~~~~~h~~~v~~~~~~~-~~~l~s~s~  334 (347)
                                 .....+++ ...|++++|+| |+.+|+++.
T Consensus       311 d~~v~lW~~~g~~l~~~~~-~~~I~~va~SPdG~~lA~~~~  350 (588)
T 2j04_A          311 EKKFKKWSTIWNEFNNYET-TLVIHGISLSPDGYSIAIVYD  350 (588)
T ss_dssp             HHHHHHTTTTTTSSSSSCC-EEEEEEEEECTTSSEEEEEEE
T ss_pred             CCEEEEEECCCCceeeecc-ceEEEEEEECCCCCEEEEEEe
Confidence                       11222222 44589999986 668888763

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=4.6e-29  Score=222.71  Aligned_cols=230  Identities=13%  Similarity=0.094  Sum_probs=169.6

Q ss_pred             ceEEEEEccCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccc
Q 036314           79 KYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQV  158 (347)
Q Consensus        79 ~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~  158 (347)
                      +...|++|+.||+|++||+.+++.         +..+.  ...|.++.++|+   +++++.|++|++|+.....      
T Consensus        47 d~~~l~sg~~Dg~v~iwd~~~~~~---------~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~------  106 (343)
T 3lrv_A           47 DKWVCMCRCEDGALHFTQLKDSKT---------ITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQI------  106 (343)
T ss_dssp             EEEEEEEEEETTEEEEEEESSSSC---------EEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEE------
T ss_pred             CCCEEEEECCCCcEEEEECCCCcE---------EEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCce------
Confidence            456899999999999999987653         22332  466778888887   9999999999999876310      


Q ss_pred             eeeeccCCCccccccccccccccc-cCCccceEEEEe-C--CCCeEEEEecCCcEEEEECCCCceeeeeee--CeeeEEE
Q 036314          159 SIKKRKGNNQVEEPQLEGEAISTL-VGHTQCVSSVVW-P--QQETIYSASWDHSVRTWDVEMGKDLSDIFC--GKALNCI  232 (347)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~-~--~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~--~~~~~~~  232 (347)
                      .....          ..+..++.+ .+|...|.++.| |  +++++++++.||+|++||+++++.......  ...+.++
T Consensus       107 ~~~~~----------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~  176 (343)
T 3lrv_A          107 TILDS----------KTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSG  176 (343)
T ss_dssp             EEEET----------TTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEE
T ss_pred             EEeec----------CCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEE
Confidence            00000          001112222 356788999998 5  678899999999999999999887544422  3368899


Q ss_pred             EeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecC-CCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceee
Q 036314          233 DIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSS-HNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVI  311 (347)
Q Consensus       233 ~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~-h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~  311 (347)
                      +++|+ +.++++|+.|+.|++||++....  ....+.+ |.+.|.+++|+|++. +|++++ |++|++||+++++.+..+
T Consensus       177 ~~~pd-g~~lasg~~dg~i~iwd~~~~~~--~~~~~~~~h~~~v~~l~fs~~g~-~l~s~~-~~~v~iwd~~~~~~~~~~  251 (343)
T 3lrv_A          177 VLHKD-SLLLALYSPDGILDVYNLSSPDQ--ASSRFPVDEEAKIKEVKFADNGY-WMVVEC-DQTVVCFDLRKDVGTLAY  251 (343)
T ss_dssp             EECTT-SCEEEEECTTSCEEEEESSCTTS--CCEECCCCTTSCEEEEEECTTSS-EEEEEE-SSBEEEEETTSSTTCBSS
T ss_pred             EECCC-CCEEEEEcCCCEEEEEECCCCCC--CccEEeccCCCCEEEEEEeCCCC-EEEEEe-CCeEEEEEcCCCCcceee
Confidence            99764 56899999999999999986432  2256777 999999999999986 588888 459999999998776555


Q ss_pred             cC---CCCeEE--EEeecC-CCEEEEccC-CceEEEeec
Q 036314          312 DS---HKDKVL--CADWWR-GDSVISGGV-DSKLCVSSG  343 (347)
Q Consensus       312 ~~---h~~~v~--~~~~~~-~~~l~s~s~-D~~v~vw~~  343 (347)
                      ..   |...+.  +++|+| |++|++++. |+.|+||+.
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~  290 (343)
T 3lrv_A          252 PTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKF  290 (343)
T ss_dssp             CCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             cccccccccccceEEEECCCCCEEEEecCCCCcEEEEEE
Confidence            43   444443  699975 778999888 999999964

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.97  E-value=2.1e-28  Score=226.54  Aligned_cols=245  Identities=14%  Similarity=0.106  Sum_probs=189.0

Q ss_pred             CcCCceeeccCCC-CCEE-EEEecCCeEEEEcCC---CeEEEEee--ccCCceEEEEEeecCCCceEEEEEccCCCcEEE
Q 036314           22 LHDDWVSAVDGSN-PGFI-LTGCYDNLGRVWKAG---GVCTHILE--GHCGAVSSVNIIKSDGLKYVTVATASKDQTLRL   94 (347)
Q Consensus        22 ~h~~~v~~~~~~~-~~~l-~sg~~d~~i~iw~~~---~~~~~~l~--~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~   94 (347)
                      +|.+.|+++++++ +.+| ++|+.|++|++|+..   +.+...+.  .|...|.+++|+|++    ..|++++.||.|++
T Consensus       100 ~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~----~~l~~~~~~g~v~~  175 (450)
T 2vdu_B          100 PIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDD----TTVIIADKFGDVYS  175 (450)
T ss_dssp             CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTS----SEEEEEETTSEEEE
T ss_pred             ccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCC----CEEEEEeCCCcEEE
Confidence            6777899999984 5675 899999999999965   56666666  677899999999854    37999999999999


Q ss_pred             EeccccccccCccccceeeeeeccccceEEEEEeCC---CCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCcccc
Q 036314           95 WKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETS---GNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEE  171 (347)
Q Consensus        95 wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~---~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~  171 (347)
                      |++..++...     .+...+.+|...|.+++|+|+   +++|++|+.|++|++||+.+..                   
T Consensus       176 ~~~~~~~~~~-----~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~-------------------  231 (450)
T 2vdu_B          176 IDINSIPEEK-----FTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCF-------------------  231 (450)
T ss_dssp             EETTSCCCSS-----CCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTT-------------------
T ss_pred             EecCCccccc-----ccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCc-------------------
Confidence            9987654221     023356789999999999999   9999999999999999987532                   


Q ss_pred             cccccccccc-ccCCccceEEEEeCCCCeEEEEecCCcEEEEECCCCceeeeeeeC------------------------
Q 036314          172 PQLEGEAIST-LVGHTQCVSSVVWPQQETIYSASWDHSVRTWDVEMGKDLSDIFCG------------------------  226 (347)
Q Consensus       172 ~~~~~~~~~~-~~~h~~~v~~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~------------------------  226 (347)
                            .+.. +.+|...|.+++|+++++|++++.|++|++||+++++.+..+...                        
T Consensus       232 ------~~~~~~~~h~~~v~~~~~sd~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (450)
T 2vdu_B          232 ------IVDKWLFGHKHFVSSICCGKDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDI  305 (450)
T ss_dssp             ------CEEEECCCCSSCEEEEEECSTTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------C
T ss_pred             ------eeeeeecCCCCceEEEEECCCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhccccccccccccccc
Confidence                  2333 557999999999987778999999999999999999877665421                        


Q ss_pred             --eeeEEEEeeCCCCcEEEEec-CCCcEEEEeC--CCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEE-eC------C
Q 036314          227 --KALNCIDIGGEGSALIAAGG-SDPILRIWDP--RKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISA-SY------D  294 (347)
Q Consensus       227 --~~~~~~~~~~~~~~~la~~~-~d~~i~iwd~--~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~-s~------D  294 (347)
                        ..+..+.+.+++ .++++++ .|+.|++||+  ........+..+..| ..|.+++|+|++  ++++. +.      +
T Consensus       306 ~~~~v~~i~~~~~~-~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~--~~v~~~~~~~~~~~~  381 (450)
T 2vdu_B          306 IEFAVSKIIKSKNL-PFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDE--FQVTLDNKESSGVQK  381 (450)
T ss_dssp             BCCCEEEEEECSSS-SEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTE--EEEEECCTTCCSSCC
T ss_pred             ceEEEEEEEEeCCC-CEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCc--EEEEEecccCCCCCC
Confidence              246678887654 4566665 8999999999  332222345667777 789999999953  34444 33      4


Q ss_pred             CcEEEEEcCC
Q 036314          295 GKVMLWDLRT  304 (347)
Q Consensus       295 ~~i~lwd~~~  304 (347)
                      ..|++|.++.
T Consensus       382 ~~i~v~~~~~  391 (450)
T 2vdu_B          382 NFAKFIEYNL  391 (450)
T ss_dssp             CSEEEEEEET
T ss_pred             cceEEEEEEc
Confidence            5589998754

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.97  E-value=1e-28  Score=215.02  Aligned_cols=211  Identities=15%  Similarity=0.094  Sum_probs=147.3

Q ss_pred             CcCCceeeccCCCC-----CEEEEEe--------------------cCCeEEEEcC-C-CeEEEEeeccCCceEEEEEee
Q 036314           22 LHDDWVSAVDGSNP-----GFILTGC--------------------YDNLGRVWKA-G-GVCTHILEGHCGAVSSVNIIK   74 (347)
Q Consensus        22 ~h~~~v~~~~~~~~-----~~l~sg~--------------------~d~~i~iw~~-~-~~~~~~l~~h~~~V~~v~~~~   74 (347)
                      .|...|++++++++     ++++++|                    .|++|++|++ + |..+..+.+|...+..++|++
T Consensus       109 ~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~  188 (356)
T 2w18_A          109 LEIREIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAE  188 (356)
T ss_dssp             SSEEEEEEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEE
T ss_pred             ccccceEEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeec
Confidence            35566777776633     3555544                    3999999996 3 777888889999999999988


Q ss_pred             cCCCceEEEEEccCCCcEEEEeccccccccCccccceeeeeeccc---cceEEEEEeCCCCEEEEeeCCCcEEEEecCCC
Q 036314           75 SDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHK---ASVHSIAAETSGNMVCSGSWDCTISLWRTNDS  151 (347)
Q Consensus        75 ~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~---~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~  151 (347)
                      ..+ +...|+++|.|++||+||+.+++         +++++.+|.   ..+.+++|+|+|+++++++.+..  +|     
T Consensus       189 ~~g-~~~~LaSgS~D~TIkIWDl~TGk---------~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~--~w-----  251 (356)
T 2w18_A          189 VQG-MQEALLGTTIMNNIVIWNLKTGQ---------LLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCA--KE-----  251 (356)
T ss_dssp             EET-STTEEEEEETTSEEEEEETTTCC---------EEEEEECCC---CCCEEEEEEETTEEEEEEC-------------
T ss_pred             cCC-CCceEEEecCCCcEEEEECCCCc---------EEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCC--cc-----
Confidence            322 23479999999999999998875         455666543   46778899999999988775533  23     


Q ss_pred             CCCCccceeeeccCCCccccccccccccccccCCccceEEEEeCCCCeEEEEecCCcEEEEECCCCceeeeee----eCe
Q 036314          152 DAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWPQQETIYSASWDHSVRTWDVEMGKDLSDIF----CGK  227 (347)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~----~~~  227 (347)
                                                                     .+++|+.|++|++||..+++.+..+.    .++
T Consensus       252 -----------------------------------------------~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh  284 (356)
T 2w18_A          252 -----------------------------------------------SESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQ  284 (356)
T ss_dssp             -----------------------------------------------------CCEEEEEEETTTTEEEEEEEECCCTTC
T ss_pred             -----------------------------------------------eeeccCCCcEEEEEECCCCEEEEEEEeeccCCC
Confidence                                                           24688899999999998887665432    121


Q ss_pred             e--eEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCee-EEEeCCCCCeEEEEEeCCCcEEEEEcC
Q 036314          228 A--LNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWIS-ACKWHNKSWFHLISASYDGKVMLWDLR  303 (347)
Q Consensus       228 ~--~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~-~v~~s~~~~~~l~s~s~D~~i~lwd~~  303 (347)
                      .  ..+.++.   +.++|+++.|++|+|||+...   ..+.++.+|.+.+. +++|+|++. +|+||+.|++|||||+.
T Consensus       285 ~~~~lsg~~s---g~~lASgS~DgTIkIWDl~tG---k~l~tL~gH~~~vvs~vafSPDG~-~LaSGS~D~TIklWd~~  356 (356)
T 2w18_A          285 AGRFLEGDVK---DHCAAAILTSGTIAIWDLLLG---QCTALLPPVSDQHWSFVKWSGTDS-HLLAGQKDGNIFVYHYS  356 (356)
T ss_dssp             CCCEEEEEEE---TTEEEEEETTSCEEEEETTTC---SEEEEECCC--CCCCEEEECSSSS-EEEEECTTSCEEEEEEC
T ss_pred             cceeEccccC---CCEEEEEcCCCcEEEEECCCC---cEEEEecCCCCCeEEEEEECCCCC-EEEEEECCCcEEEecCC
Confidence            1  2222222   347899999999999999753   34778889988765 589999986 59999999999999963

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.96  E-value=2.1e-26  Score=208.67  Aligned_cols=275  Identities=12%  Similarity=0.023  Sum_probs=202.9

Q ss_pred             CceeeccCCC-CCEE-EEEecCCeEEEEcC-CCeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccc
Q 036314           25 DWVSAVDGSN-PGFI-LTGCYDNLGRVWKA-GGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEE  101 (347)
Q Consensus        25 ~~v~~~~~~~-~~~l-~sg~~d~~i~iw~~-~~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~  101 (347)
                      ..+.++++++ +.+| ++++.|++|++||. .++++..+..|. .+.+++|+|++.   ..+++++.|++|++||+.+++
T Consensus        32 ~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg~---~l~~~~~~~~~v~v~d~~~~~  107 (391)
T 1l0q_A           32 SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGK---QVYVTNMASSTLSVIDTTSNT  107 (391)
T ss_dssp             SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSS---EEEEEETTTTEEEEEETTTTE
T ss_pred             CCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEECCCCC---EEEEEECCCCEEEEEECCCCe
Confidence            4588999884 5555 78889999999997 467777777665 799999998543   244677788999999998764


Q ss_pred             cccCccccceeeeeeccccceEEEEEeCCCCEE-EEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccc
Q 036314          102 LVNHPKKIRSFKILRGHKASVHSIAAETSGNMV-CSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAIS  180 (347)
Q Consensus       102 ~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l-~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (347)
                      .         ...+.. ...+.+++|+|+++.+ ++++.|+.|++||+.+..                         .+.
T Consensus       108 ~---------~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~-------------------------~~~  152 (391)
T 1l0q_A          108 V---------AGTVKT-GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKA-------------------------VIN  152 (391)
T ss_dssp             E---------EEEEEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE-------------------------EEE
T ss_pred             E---------EEEEeC-CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCc-------------------------EEE
Confidence            2         333444 4568999999999977 788899999999987532                         222


Q ss_pred             cccCCccceEEEEe-CCCCeE-EEEecCCcEEEEECCCCceeeeeeeCeeeEEEEeeCCCCcEEEEec--CCCcEEEEeC
Q 036314          181 TLVGHTQCVSSVVW-PQQETI-YSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEGSALIAAGG--SDPILRIWDP  256 (347)
Q Consensus       181 ~~~~h~~~v~~~~~-~~~~~l-~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~--~d~~i~iwd~  256 (347)
                      .+..| ..+..+.| ++++.+ ++++.|+.|++||+++++....+.....+.++++++++..+++++.  .++.|++||+
T Consensus       153 ~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~  231 (391)
T 1l0q_A          153 TVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDT  231 (391)
T ss_dssp             EEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEET
T ss_pred             EEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecCCCccceEECCCCCEEEEEecCcCCCcEEEEEC
Confidence            33333 34577777 566666 6778899999999999887777766667888999776654444433  6899999998


Q ss_pred             CCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecCCCCeEE---------------EE
Q 036314          257 RKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKVL---------------CA  321 (347)
Q Consensus       257 ~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h~~~v~---------------~~  321 (347)
                      +..   ..+..+..|. .+.+++|+|++.+++++++.|+.|++||+++++.+..+..|..+..               ..
T Consensus       232 ~~~---~~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  307 (391)
T 1l0q_A          232 GTN---KITARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGKNPYASGQFIGSIPVQPVYPSA  307 (391)
T ss_dssp             TTT---EEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEECCSSCEEECSSCCCCCBC
T ss_pred             CCC---eEEEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCCCccceeeeccccccccccc
Confidence            743   2355666554 5789999999987668889999999999999988877766654421               11


Q ss_pred             eec-C---C-------CEEEEccCCceEEEeec
Q 036314          322 DWW-R---G-------DSVISGGVDSKLCVSSG  343 (347)
Q Consensus       322 ~~~-~---~-------~~l~s~s~D~~v~vw~~  343 (347)
                      .|+ +   +       -.+.+.+.|.++++|+.
T Consensus       308 ~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~  340 (391)
T 1l0q_A          308 DFKSNITSGYIFLSEPVQFTDLSKDATEWKWDF  340 (391)
T ss_dssp             CEEESCCSSEEETTCCEEEEECCBSCSEEEEEC
T ss_pred             ccccccccccccccceEEEEeCCCCceEEEEEC
Confidence            222 1   1       34778888999999975

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.95  E-value=1.8e-26  Score=211.87  Aligned_cols=265  Identities=11%  Similarity=0.016  Sum_probs=196.7

Q ss_pred             EEecCCeEEEEc--CC-C--eEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeee
Q 036314           40 TGCYDNLGRVWK--AG-G--VCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKI  114 (347)
Q Consensus        40 sg~~d~~i~iw~--~~-~--~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~  114 (347)
                      +++.|+.+++|.  .. +  ..+..+..+. .+.+++|+| ++   ..+++++.|++|++||+.+++....    .....
T Consensus        94 ~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~-~~~~~~~s~-~~---~~~~~~~~~~~i~~~d~~~g~~~~~----~~~~~  164 (433)
T 3bws_A           94 RKPEELNEKLIALDKEGITHRFISRFKTGF-QPKSVRFID-NT---RLAIPLLEDEGMDVLDINSGQTVRL----SPPEK  164 (433)
T ss_dssp             SSGGGGTTCEEECCBTTCSEEEEEEEECSS-CBCCCEESS-SS---EEEEEBTTSSSEEEEETTTCCEEEE----CCCHH
T ss_pred             cccCCCceEEEEECCCCCcceEEEEEcCCC-CceEEEEeC-CC---eEEEEeCCCCeEEEEECCCCeEeee----cCccc
Confidence            344455445554  43 2  3455565554 466899988 32   4788899999999999987653211    01113


Q ss_pred             eeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEe
Q 036314          115 LRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW  194 (347)
Q Consensus       115 ~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  194 (347)
                      +.+|...|.+++|+++++++++++.|++|++||+.+.                         +.+..+..|...+.+++|
T Consensus       165 ~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~-------------------------~~~~~~~~~~~~~~~~~~  219 (433)
T 3bws_A          165 YKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTL-------------------------AYKATVDLTGKWSKILLY  219 (433)
T ss_dssp             HHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTC-------------------------CEEEEEECSSSSEEEEEE
T ss_pred             ccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCc-------------------------eEEEEEcCCCCCeeEEEE
Confidence            4589999999999999999999999999999998753                         223455567788899998


Q ss_pred             -CCCCeEE-EEecCCcEEEEECCCCceeeeeeeCeeeEEEEeeCCCCcEEEEec--------CCCcEEEEeCCCCCCCCC
Q 036314          195 -PQQETIY-SASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEGSALIAAGG--------SDPILRIWDPRKPGTSAP  264 (347)
Q Consensus       195 -~~~~~l~-s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~--------~d~~i~iwd~~~~~~~~~  264 (347)
                       ++++.++ +++.|+.|++||+++++.+..+.....+.++++++++. .+++++        .|+.|++||++...   .
T Consensus       220 ~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~-~l~~~~~~~~~~~~~dg~i~~~d~~~~~---~  295 (433)
T 3bws_A          220 DPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGK-ELYIAQFSASNQESGGGRLGIYSMDKEK---L  295 (433)
T ss_dssp             ETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECTTSS-EEEEEEEESCTTCSCCEEEEEEETTTTE---E
T ss_pred             cCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcCCCC-EEEEEECCCCccccCCCeEEEEECCCCc---E
Confidence             5677764 55589999999999988777766666788899977654 555555        58899999987431   2


Q ss_pred             eEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecCCCCeEEEEeecC-CCEEEEccC---------
Q 036314          265 VFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKVLCADWWR-GDSVISGGV---------  334 (347)
Q Consensus       265 ~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~l~s~s~---------  334 (347)
                      . ....|...+.+++|+|++..++++++.|+.|++||+++++.+..+. |...+.+++|+| |++|++++.         
T Consensus       296 ~-~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~  373 (433)
T 3bws_A          296 I-DTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGY  373 (433)
T ss_dssp             E-EEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCT
T ss_pred             E-eeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCcccccc
Confidence            2 2234566889999999998778888999999999999887777765 667899999986 666776665         


Q ss_pred             ------CceEEEeecc
Q 036314          335 ------DSKLCVSSGV  344 (347)
Q Consensus       335 ------D~~v~vw~~~  344 (347)
                            ||.|++|+..
T Consensus       374 ~~~g~~dg~v~~~d~~  389 (433)
T 3bws_A          374 LKKGLVLGKVYVIDTT  389 (433)
T ss_dssp             TSCCSSCCEEEEEETT
T ss_pred             ccccccceEEEEEECC
Confidence                  5799999864

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.95  E-value=3.4e-25  Score=202.82  Aligned_cols=259  Identities=12%  Similarity=0.083  Sum_probs=193.1

Q ss_pred             CCCcCCceeeccCCC---------------CCEEEEEecC------CeEEEEcCCCeEEEEeeccCCceEEEEEeecCCC
Q 036314           20 PSLHDDWVSAVDGSN---------------PGFILTGCYD------NLGRVWKAGGVCTHILEGHCGAVSSVNIIKSDGL   78 (347)
Q Consensus        20 ~~~h~~~v~~~~~~~---------------~~~l~sg~~d------~~i~iw~~~~~~~~~l~~h~~~V~~v~~~~~~~~   78 (347)
                      ..+|...+..++++.               +..++.++.+      ++|++||..+...+.+.+|...|.+++|+|++  
T Consensus       113 ~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~~~~~~v~~~~~Spdg--  190 (415)
T 2hqs_A          113 YKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDG--  190 (415)
T ss_dssp             EEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCSCEEEEEESSCEEEEEECTTS--
T ss_pred             EEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCCCEEEeCCCCcceeeEEcCCC--
Confidence            446777787766441               5677777665      79999999877778889999999999999954  


Q ss_pred             ceEEEEEccCCC---cEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEEE-EeeCCCc--EEEEecCCCC
Q 036314           79 KYVTVATASKDQ---TLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVC-SGSWDCT--ISLWRTNDSD  152 (347)
Q Consensus        79 ~~~~l~s~s~Dg---~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~-sgs~Dg~--I~iwd~~~~~  152 (347)
                        ..|++++.|+   +|++||+.+++.          ..+..|...+.+++|+|||+.|+ +++.|+.  |++||+.+..
T Consensus       191 --~~la~~s~~~~~~~i~~~d~~tg~~----------~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~  258 (415)
T 2hqs_A          191 --SKLAYVTFESGRSALVIQTLANGAV----------RQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ  258 (415)
T ss_dssp             --SEEEEEECTTSSCEEEEEETTTCCE----------EEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC
T ss_pred             --CEEEEEEecCCCcEEEEEECCCCcE----------EEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCC
Confidence              3688888875   999999987642          24567888999999999999777 7777765  8889986532


Q ss_pred             CCCccceeeeccCCCccccccccccccccccCCccceEEEEe-CCCCeEEEEec-CC--cEEEEECCCCceeeeeeeCee
Q 036314          153 AAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW-PQQETIYSASW-DH--SVRTWDVEMGKDLSDIFCGKA  228 (347)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~l~s~s~-dg--~v~vwd~~~~~~~~~~~~~~~  228 (347)
                                                ...+..|...+.++.| |+++.|++++. ++  .|.+||+.+++..........
T Consensus       259 --------------------------~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~~~~~~  312 (415)
T 2hqs_A          259 --------------------------IRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQ  312 (415)
T ss_dssp             --------------------------EEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSE
T ss_pred             --------------------------EEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEEEecCCCc
Confidence                                      2345567778888998 57788888776 45  577779887764322223456


Q ss_pred             eEEEEeeCCCCcEEEEecC---CCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCC---cEEEEEc
Q 036314          229 LNCIDIGGEGSALIAAGGS---DPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDG---KVMLWDL  302 (347)
Q Consensus       229 ~~~~~~~~~~~~~la~~~~---d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~---~i~lwd~  302 (347)
                      +..++|+|++. .|+.++.   +..|++||+....    ...+..|. .+.+++|+|++.. |++++.|+   .|.+||+
T Consensus       313 ~~~~~~spdG~-~l~~~~~~~g~~~i~~~d~~~~~----~~~l~~~~-~~~~~~~spdg~~-l~~~s~~~~~~~l~~~d~  385 (415)
T 2hqs_A          313 NQDADVSSDGK-FMVMVSSNGGQQHIAKQDLATGG----VQVLSSTF-LDETPSLAPNGTM-VIYSSSQGMGSVLNLVST  385 (415)
T ss_dssp             EEEEEECTTSS-EEEEEEECSSCEEEEEEETTTCC----EEECCCSS-SCEEEEECTTSSE-EEEEEEETTEEEEEEEET
T ss_pred             ccCeEECCCCC-EEEEEECcCCceEEEEEECCCCC----EEEecCCC-CcCCeEEcCCCCE-EEEEEcCCCccEEEEEEC
Confidence            77888977655 5555543   3589999987432    34555564 7899999999975 77777666   7999999


Q ss_pred             CCCccceeecCCCCeEEEEeecCC
Q 036314          303 RTAWPLSVIDSHKDKVLCADWWRG  326 (347)
Q Consensus       303 ~~~~~~~~~~~h~~~v~~~~~~~~  326 (347)
                      + +.....+.+|.+.|.+++|+|-
T Consensus       386 ~-g~~~~~l~~~~~~v~~~~~~~~  408 (415)
T 2hqs_A          386 D-GRFKARLPATDGQVKFPAWSPY  408 (415)
T ss_dssp             T-SCCEEECCCSSSEEEEEEECCC
T ss_pred             C-CCcEEEeeCCCCCCcCCccccc
Confidence            7 4567888999999999999874

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.95  E-value=3.4e-25  Score=202.84  Aligned_cols=275  Identities=12%  Similarity=0.038  Sum_probs=193.8

Q ss_pred             CceeeccCC-CC-CEEEEEe----cCC----eEEEEcC--C-CeEE--EEeeccCCceEEEEEeecC----------CCc
Q 036314           25 DWVSAVDGS-NP-GFILTGC----YDN----LGRVWKA--G-GVCT--HILEGHCGAVSSVNIIKSD----------GLK   79 (347)
Q Consensus        25 ~~v~~~~~~-~~-~~l~sg~----~d~----~i~iw~~--~-~~~~--~~l~~h~~~V~~v~~~~~~----------~~~   79 (347)
                      ..+...+++ .+ .++|+|+    .||    ++++||.  . ++++  ..+.+|...+..+++.+.+          +..
T Consensus        63 ~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~  142 (415)
T 2hqs_A           63 QEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAF  142 (415)
T ss_dssp             GGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCT
T ss_pred             cCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcC
Confidence            455555544 33 5788887    457    9999998  4 5655  5588998888777665310          000


Q ss_pred             eEEEEEccCC------CcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCC---cEEEEecCC
Q 036314           80 YVTVATASKD------QTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDC---TISLWRTND  150 (347)
Q Consensus        80 ~~~l~s~s~D------g~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg---~I~iwd~~~  150 (347)
                      ...++.++.+      ++|++||++..          ....+.+|...|.+++|+|||+.|++++.|+   +|++||+.+
T Consensus       143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~----------~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~t  212 (415)
T 2hqs_A          143 RTRIAYVVQTNGGQFPYELRVSDYDGY----------NQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLAN  212 (415)
T ss_dssp             TCEEEEEEECSSSSCCEEEEEEETTSC----------SCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTT
T ss_pred             CCEEEEEEecCCCCccceEEEEcCCCC----------CCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCC
Confidence            1235555543      79999998743          2345678999999999999999999999886   999999876


Q ss_pred             CCCCCccceeeeccCCCccccccccccccccccCCccceEEEEe-CCCCeEE-EEecCCc--EEEEECCCCceeeeeeeC
Q 036314          151 SDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW-PQQETIY-SASWDHS--VRTWDVEMGKDLSDIFCG  226 (347)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~l~-s~s~dg~--v~vwd~~~~~~~~~~~~~  226 (347)
                      +.                          ...+..|...+.+++| |+++.|+ +++.|+.  |.+||+++++........
T Consensus       213 g~--------------------------~~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~  266 (415)
T 2hqs_A          213 GA--------------------------VRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGR  266 (415)
T ss_dssp             CC--------------------------EEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCS
T ss_pred             Cc--------------------------EEEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCcCCC
Confidence            42                          1234456677889998 5777776 6666665  899999887653322234


Q ss_pred             eeeEEEEeeCCCCcEEEEecC-CC--cEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCC---CcEEEE
Q 036314          227 KALNCIDIGGEGSALIAAGGS-DP--ILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYD---GKVMLW  300 (347)
Q Consensus       227 ~~~~~~~~~~~~~~~la~~~~-d~--~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D---~~i~lw  300 (347)
                      ..+.++.|+|++. .|+.++. ++  .|.+||+....    ...+..|...+.+++|+|++.+ |++++.+   ..|.+|
T Consensus       267 ~~~~~~~~spdg~-~l~~~s~~~g~~~i~~~d~~~~~----~~~l~~~~~~~~~~~~spdG~~-l~~~~~~~g~~~i~~~  340 (415)
T 2hqs_A          267 SNNTEPTWFPDSQ-NLAFTSDQAGRPQVYKVNINGGA----PQRITWEGSQNQDADVSSDGKF-MVMVSSNGGQQHIAKQ  340 (415)
T ss_dssp             SCEEEEEECTTSS-EEEEEECTTSSCEEEEEETTSSC----CEECCCSSSEEEEEEECTTSSE-EEEEEECSSCEEEEEE
T ss_pred             CcccceEECCCCC-EEEEEECCCCCcEEEEEECCCCC----EEEEecCCCcccCeEECCCCCE-EEEEECcCCceEEEEE
Confidence            4678889977655 4555444 55  67777876421    3455567788999999999975 6666543   589999


Q ss_pred             EcCCCccceeecCCCCeEEEEeecC-CCEEEEccCCc---eEEEeec
Q 036314          301 DLRTAWPLSVIDSHKDKVLCADWWR-GDSVISGGVDS---KLCVSSG  343 (347)
Q Consensus       301 d~~~~~~~~~~~~h~~~v~~~~~~~-~~~l~s~s~D~---~v~vw~~  343 (347)
                      |+++++. ..+..|. .+.++.|+| |++|+.++.|+   .|.+|+.
T Consensus       341 d~~~~~~-~~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~  385 (415)
T 2hqs_A          341 DLATGGV-QVLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVST  385 (415)
T ss_dssp             ETTTCCE-EECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEET
T ss_pred             ECCCCCE-EEecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEEC
Confidence            9998764 4566664 889999985 77788888777   7888874

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.93  E-value=1.1e-23  Score=198.83  Aligned_cols=279  Identities=10%  Similarity=0.044  Sum_probs=198.7

Q ss_pred             CC-CCCEEEEEecCCeEEEEcCC-CeEEEEee-ccCCceEEEEEeecCCCceEEEEEccCCCcEEEEec--cccccccCc
Q 036314           32 GS-NPGFILTGCYDNLGRVWKAG-GVCTHILE-GHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKF--DAEELVNHP  106 (347)
Q Consensus        32 ~~-~~~~l~sg~~d~~i~iw~~~-~~~~~~l~-~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~--~~~~~~~~~  106 (347)
                      ++ ++.++++++.|++|++||.. ++++..+. +|.  +..++|+|++    .+|++++.|++|++||+  .+++     
T Consensus       145 ~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~--~~~v~~spdg----~~l~v~~~d~~V~v~D~~~~t~~-----  213 (543)
T 1nir_A          145 LDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA--VHISRMSASG----RYLLVIGRDARIDMIDLWAKEPT-----  213 (543)
T ss_dssp             CCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT--EEEEEECTTS----CEEEEEETTSEEEEEETTSSSCE-----
T ss_pred             cCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc--cceEEECCCC----CEEEEECCCCeEEEEECcCCCCc-----
Confidence            44 34588899999999999974 67888887 444  8899999954    47899999999999999  5443     


Q ss_pred             cccceeeeeeccccceEEEEEeC----CCCEEEEeeC-CCcEEEEecCCCCCCCccceeeeccCCCcccccccccccccc
Q 036314          107 KKIRSFKILRGHKASVHSIAAET----SGNMVCSGSW-DCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAIST  181 (347)
Q Consensus       107 ~~~~~~~~~~~h~~~V~~v~~s~----~~~~l~sgs~-Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (347)
                          .+.++. +...+..++|+|    ||+++++++. +++|.+||..+.+......    .           .+.....
T Consensus       214 ----~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~----~-----------~g~~~~~  273 (543)
T 1nir_A          214 ----KVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVS----T-----------RGMTVDT  273 (543)
T ss_dssp             ----EEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEE----C-----------CEECSSS
T ss_pred             ----EEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeec----c-----------cCcccCc
Confidence                344555 345679999999    9999998884 8999999987643211000    0           0000000


Q ss_pred             ccCCcc-ceEEEEeC-CCC-eEEEEecCCcEEEEECCCCceee--eeeeCeeeEEEEeeCCCCcEEEEecCCCcEEEEeC
Q 036314          182 LVGHTQ-CVSSVVWP-QQE-TIYSASWDHSVRTWDVEMGKDLS--DIFCGKALNCIDIGGEGSALIAAGGSDPILRIWDP  256 (347)
Q Consensus       182 ~~~h~~-~v~~~~~~-~~~-~l~s~s~dg~v~vwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~  256 (347)
                      ...|.. .+..+.++ ++. .+++...+++|.+||+.+.+.+.  .+.....+..+.|+|++..+++++..+++|.+||+
T Consensus       274 ~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~  353 (543)
T 1nir_A          274 QTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDS  353 (543)
T ss_dssp             CCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEET
T ss_pred             cccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEEC
Confidence            001222 56777764 444 46788889999999998765443  33334456678888877666777777999999998


Q ss_pred             CCCCCCCCeEEecC----CCCCeeEEEeCCCCCeEEEEEe-CCCcEEEEEcCC-------CccceeecCCCCeEEEEeec
Q 036314          257 RKPGTSAPVFQFSS----HNSWISACKWHNKSWFHLISAS-YDGKVMLWDLRT-------AWPLSVIDSHKDKVLCADWW  324 (347)
Q Consensus       257 ~~~~~~~~~~~~~~----h~~~v~~v~~s~~~~~~l~s~s-~D~~i~lwd~~~-------~~~~~~~~~h~~~v~~~~~~  324 (347)
                      ...   .....+..    |......+ ++|++...++|++ .|++|.|||+.+       ++.++++.+|.+.++.+.|+
T Consensus       354 ~tg---~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~  429 (543)
T 1nir_A          354 KDR---RLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTH  429 (543)
T ss_dssp             TTT---EEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECC
T ss_pred             CCC---eEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcC
Confidence            753   22344442    65544443 4677666778876 689999999988       78889999998888999998


Q ss_pred             C-CCEEEEcc-------CCceEEEeeccc
Q 036314          325 R-GDSVISGG-------VDSKLCVSSGVS  345 (347)
Q Consensus       325 ~-~~~l~s~s-------~D~~v~vw~~~~  345 (347)
                      | +++|.+++       .+++|.||+..+
T Consensus       430 pdg~~l~v~~~~~~~~~~~~~v~v~d~~~  458 (543)
T 1nir_A          430 PKSSHLYVDTTFNPDARISQSVAVFDLKN  458 (543)
T ss_dssp             TTCCEEEECCTTCSSHHHHTCEEEEETTC
T ss_pred             CCCCcEEEecCCCCCcccCceEEEEECCC
Confidence            6 67788876       378999999763

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.93  E-value=9.4e-23  Score=192.55  Aligned_cols=279  Identities=15%  Similarity=0.099  Sum_probs=200.3

Q ss_pred             eeeccCC-CCCEEEEEecCCeEEEEcC--C-CeEEEEeeccCCceEEEEEee----cCCCceEEEEEcc-CCCcEEEEec
Q 036314           27 VSAVDGS-NPGFILTGCYDNLGRVWKA--G-GVCTHILEGHCGAVSSVNIIK----SDGLKYVTVATAS-KDQTLRLWKF   97 (347)
Q Consensus        27 v~~~~~~-~~~~l~sg~~d~~i~iw~~--~-~~~~~~l~~h~~~V~~v~~~~----~~~~~~~~l~s~s-~Dg~v~~wd~   97 (347)
                      +..++++ ++++|++++.|++|++||.  . +.++..+.. ...+.+++|+|    ++.    +|++++ .+++|++||.
T Consensus       181 ~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~-g~~p~~va~sp~~~~dg~----~l~v~~~~~~~v~v~D~  255 (543)
T 1nir_A          181 VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI-GIEARSVESSKFKGYEDR----YTIAGAYWPPQFAIMDG  255 (543)
T ss_dssp             EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC-CSEEEEEEECCSTTCTTT----EEEEEEEESSEEEEEET
T ss_pred             cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEec-CCCcceEEeCCCcCCCCC----EEEEEEccCCeEEEEec
Confidence            7788888 5679999999999999998  3 667777774 45579999998    654    466666 5899999998


Q ss_pred             cccccccCccccceeeeeec----------c-ccceEEEEEeCCCC-EEEEeeCCCcEEEEecCCCCCCCccceeeeccC
Q 036314           98 DAEELVNHPKKIRSFKILRG----------H-KASVHSIAAETSGN-MVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKG  165 (347)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~----------h-~~~V~~v~~s~~~~-~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~  165 (347)
                      .+.++         ++++..          | ...+.++.+++++. ++++...+++|.+||..+.....          
T Consensus       256 ~t~~~---------~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~----------  316 (543)
T 1nir_A          256 ETLEP---------KQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLT----------  316 (543)
T ss_dssp             TTCCE---------EEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCE----------
T ss_pred             ccccc---------ceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcce----------
Confidence            76653         223322          2 33688999999875 56778889999999987642110          


Q ss_pred             CCccccccccccccccccCCccceEEEEe-CCCCeEEEE-ecCCcEEEEECCCCceeeeeeeC---eeeEEEE-eeCCCC
Q 036314          166 NNQVEEPQLEGEAISTLVGHTQCVSSVVW-PQQETIYSA-SWDHSVRTWDVEMGKDLSDIFCG---KALNCID-IGGEGS  239 (347)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~l~s~-s~dg~v~vwd~~~~~~~~~~~~~---~~~~~~~-~~~~~~  239 (347)
                                   +..+ .+...+..+.| |++++++++ ..+++|++||+++++.+..+..+   ++-.... ++++++
T Consensus       317 -------------~~~i-~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~~g  382 (543)
T 1nir_A          317 -------------VTSI-GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYG  382 (543)
T ss_dssp             -------------EEEE-ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEEEETTTE
T ss_pred             -------------eEEe-ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCcccCCCCCc
Confidence                         0011 13344556777 577776654 56899999999999887766532   1111112 345556


Q ss_pred             cEEEEec-CCCcEEEEeCCCCCC----CCCeEEecCCCCCeeEEEeCCCCCeEEEEEe-------CCCcEEEEEcCCCcc
Q 036314          240 ALIAAGG-SDPILRIWDPRKPGT----SAPVFQFSSHNSWISACKWHNKSWFHLISAS-------YDGKVMLWDLRTAWP  307 (347)
Q Consensus       240 ~~la~~~-~d~~i~iwd~~~~~~----~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s-------~D~~i~lwd~~~~~~  307 (347)
                      .+++++. .|++|.+||+...+.    .+.+.++.+|...+..++++|++.+ |++++       .+++|.|||+.+++.
T Consensus       383 ~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~-l~v~~~~~~~~~~~~~v~v~d~~~~~~  461 (543)
T 1nir_A          383 PVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSH-LYVDTTFNPDARISQSVAVFDLKNLDA  461 (543)
T ss_dssp             EEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCE-EEECCTTCSSHHHHTCEEEEETTCTTS
T ss_pred             cEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCc-EEEecCCCCCcccCceEEEEECCCCCC
Confidence            6777775 689999999875221    3457888999988899999999975 77776       277999999999877


Q ss_pred             c-eee--------cCCCCeEEEEeecC-CCEEEEc-----cCCceEEEeecc
Q 036314          308 L-SVI--------DSHKDKVLCADWWR-GDSVISG-----GVDSKLCVSSGV  344 (347)
Q Consensus       308 ~-~~~--------~~h~~~v~~~~~~~-~~~l~s~-----s~D~~v~vw~~~  344 (347)
                      . ..+        ..|...++.++|++ |+.|..+     +.|++|.||+.-
T Consensus       462 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~  513 (543)
T 1nir_A          462 KYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDK  513 (543)
T ss_dssp             CCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETT
T ss_pred             CeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECC
Confidence            6 443        35678899999985 7765543     358999999865

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.92  E-value=6.4e-23  Score=181.78  Aligned_cols=270  Identities=11%  Similarity=0.148  Sum_probs=178.3

Q ss_pred             EEEEEecCCeEEEEcCC--CeE-EEEeeccCCceEEEEEeecCCCceEEEEEccCC-CcEEEEecc--ccccccCccccc
Q 036314           37 FILTGCYDNLGRVWKAG--GVC-THILEGHCGAVSSVNIIKSDGLKYVTVATASKD-QTLRLWKFD--AEELVNHPKKIR  110 (347)
Q Consensus        37 ~l~sg~~d~~i~iw~~~--~~~-~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~D-g~v~~wd~~--~~~~~~~~~~~~  110 (347)
                      ++++++.|+.|++|+..  +.. ......|...+.+++|+|++.    .|++++.+ +.|++|+++  +++       .+
T Consensus         7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~----~l~~~~~~~~~v~~~~~~~~~~~-------~~   75 (343)
T 1ri6_A            7 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKR----YLYVGVRPEFRVLAYRIAPDDGA-------LT   75 (343)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSS----EEEEEETTTTEEEEEEECTTTCC-------EE
T ss_pred             EEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCC----EEEEeecCCCeEEEEEecCCCCc-------ee
Confidence            45566889999999874  432 222345777889999998543    46666665 999999987  332       12


Q ss_pred             eeeeeeccccceEEEEEeCCCCEEEEeeC-CCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccce
Q 036314          111 SFKILRGHKASVHSIAAETSGNMVCSGSW-DCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCV  189 (347)
Q Consensus       111 ~~~~~~~h~~~V~~v~~s~~~~~l~sgs~-Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v  189 (347)
                      .+..+..+. .+..++|+|+++++++++. ++.|++||+.++..                      ......+..+ ..+
T Consensus        76 ~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~----------------------~~~~~~~~~~-~~~  131 (343)
T 1ri6_A           76 FAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLP----------------------VGVVDVVEGL-DGC  131 (343)
T ss_dssp             EEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEE----------------------EEEEEEECCC-TTB
T ss_pred             eccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcc----------------------ccccccccCC-CCc
Confidence            333444444 7889999999997766654 88999999852110                      0111122222 235


Q ss_pred             EEEEe-CCCCeEEEEe-cCCcEEEEECCC-Cceee----eee--eCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCC
Q 036314          190 SSVVW-PQQETIYSAS-WDHSVRTWDVEM-GKDLS----DIF--CGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPG  260 (347)
Q Consensus       190 ~~~~~-~~~~~l~s~s-~dg~v~vwd~~~-~~~~~----~~~--~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~  260 (347)
                      .+++| ++++.+++++ .++.|.+||+.+ ++...    .+.  .+..+..+++++++..+++++..++.|++||+....
T Consensus       132 ~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~  211 (343)
T 1ri6_A          132 HSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPH  211 (343)
T ss_dssp             CCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTT
T ss_pred             eEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCC
Confidence            56666 5677777776 899999999987 54321    111  233567788987766566677789999999986321


Q ss_pred             -CCCCeEEec----CC--CCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCC--C--ccceeecCCCCeEEEEeecC-CCE
Q 036314          261 -TSAPVFQFS----SH--NSWISACKWHNKSWFHLISASYDGKVMLWDLRT--A--WPLSVIDSHKDKVLCADWWR-GDS  328 (347)
Q Consensus       261 -~~~~~~~~~----~h--~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~--~--~~~~~~~~h~~~v~~~~~~~-~~~  328 (347)
                       .......+.    ++  ...+..++|+|++.++++++..|+.|++||++.  +  +.+..+..+.. +.+++|++ |++
T Consensus       212 g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~  290 (343)
T 1ri6_A          212 GNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKY  290 (343)
T ss_dssp             SCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSE
T ss_pred             CcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCE
Confidence             111122221    11  235678999999987666777899999999982  2  33444544444 88899975 666


Q ss_pred             EEEcc-CCceEEEee
Q 036314          329 VISGG-VDSKLCVSS  342 (347)
Q Consensus       329 l~s~s-~D~~v~vw~  342 (347)
                      |++++ .|+.|.||+
T Consensus       291 l~~~~~~~~~v~v~~  305 (343)
T 1ri6_A          291 LIAAGQKSHHISVYE  305 (343)
T ss_dssp             EEEECTTTCEEEEEE
T ss_pred             EEEecCCCCeEEEEE
Confidence            66655 689999994

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.92  E-value=3e-23  Score=179.62  Aligned_cols=255  Identities=11%  Similarity=0.051  Sum_probs=178.3

Q ss_pred             EEEecCCeEEEEcCCCeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccc-cccccCccccceeeeeec
Q 036314           39 LTGCYDNLGRVWKAGGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDA-EELVNHPKKIRSFKILRG  117 (347)
Q Consensus        39 ~sg~~d~~i~iw~~~~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~-~~~~~~~~~~~~~~~~~~  117 (347)
                      .+++.|++|++||..+.....+..|.+.|.+++|+|++.    .|++++ ++.|++||+.+ ++.         ...+.+
T Consensus        16 ~~~~~~~~i~~~d~~~~~~~~~~~~~~~v~~~~~spdg~----~l~~~~-~~~i~~~d~~~~~~~---------~~~~~~   81 (297)
T 2ojh_A           16 PGGSMRSSIEIFNIRTRKMRVVWQTPELFEAPNWSPDGK----YLLLNS-EGLLYRLSLAGDPSP---------EKVDTG   81 (297)
T ss_dssp             --CCCCEEEEEEETTTTEEEEEEEESSCCEEEEECTTSS----EEEEEE-TTEEEEEESSSCCSC---------EECCCT
T ss_pred             CCCCcceeEEEEeCCCCceeeeccCCcceEeeEECCCCC----EEEEEc-CCeEEEEeCCCCCCc---------eEeccc
Confidence            356789999999987555556778999999999999543    577765 78999999987 542         223334


Q ss_pred             c-ccceEEEEEeCCCCEEEEee--CCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEe
Q 036314          118 H-KASVHSIAAETSGNMVCSGS--WDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW  194 (347)
Q Consensus       118 h-~~~V~~v~~s~~~~~l~sgs--~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  194 (347)
                      | ...+.+++|+|++++|++++  .++.++||.+....                        .....+..+. .+..+.|
T Consensus        82 ~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~------------------------~~~~~~~~~~-~~~~~~~  136 (297)
T 2ojh_A           82 FATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTG------------------------GTPRLMTKNL-PSYWHGW  136 (297)
T ss_dssp             TCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTC------------------------CCCEECCSSS-SEEEEEE
T ss_pred             cccccccceEECCCCCEEEEEEeCCCCcceEEEEECCC------------------------CceEEeecCC-CccceEE
Confidence            4 46788999999999999988  44677777653211                        0011222222 3677777


Q ss_pred             -CCCCeEE-EEecCCcEEEEECC--CCceeeeee-eCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEec
Q 036314          195 -PQQETIY-SASWDHSVRTWDVE--MGKDLSDIF-CGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFS  269 (347)
Q Consensus       195 -~~~~~l~-s~s~dg~v~vwd~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~  269 (347)
                       |+++.|+ +++.|+.++||++.  ++.. ..+. ....+.++.+++++..+++++..++.+++|++....  .....+.
T Consensus       137 spdg~~l~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~--~~~~~~~  213 (297)
T 2ojh_A          137 SPDGKSFTYCGIRDQVFDIYSMDIDSGVE-TRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDG--SSVERIT  213 (297)
T ss_dssp             CTTSSEEEEEEEETTEEEEEEEETTTCCE-EECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS--SCEEECC
T ss_pred             CCCCCEEEEEECCCCceEEEEEECCCCcc-eEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCC--CCcEEEe
Confidence             5777765 78889999999863  3333 3332 334678889987665555555568999999876322  2356777


Q ss_pred             CCCCCeeEEEeCCCCCeEEEEEeCC-----------CcEEEEEcCCCccc--eeecCCCCeEEEEeecC-CCEEEEccCC
Q 036314          270 SHNSWISACKWHNKSWFHLISASYD-----------GKVMLWDLRTAWPL--SVIDSHKDKVLCADWWR-GDSVISGGVD  335 (347)
Q Consensus       270 ~h~~~v~~v~~s~~~~~~l~s~s~D-----------~~i~lwd~~~~~~~--~~~~~h~~~v~~~~~~~-~~~l~s~s~D  335 (347)
                      .|...+.++.|+|++.+ |+.++.+           +.|.+||+++++..  ..+.+|...+.++.|+| |++|++++.|
T Consensus       214 ~~~~~~~~~~~s~dg~~-l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~  292 (297)
T 2ojh_A          214 DSAYGDWFPHPSPSGDK-VVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYF  292 (297)
T ss_dssp             CCSEEEEEEEECTTSSE-EEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEEC
T ss_pred             cCCcccCCeEECCCCCE-EEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEec
Confidence            78888999999999975 6666654           56999999887653  33447888899999985 7778777755


Q ss_pred             c
Q 036314          336 S  336 (347)
Q Consensus       336 ~  336 (347)
                      .
T Consensus       293 ~  293 (297)
T 2ojh_A          293 P  293 (297)
T ss_dssp             C
T ss_pred             c
Confidence            3

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.91  E-value=9.3e-22  Score=173.94  Aligned_cols=271  Identities=11%  Similarity=-0.002  Sum_probs=183.1

Q ss_pred             CCEEEEEecCCeEEEEcCC-CeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceee
Q 036314           35 PGFILTGCYDNLGRVWKAG-GVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFK  113 (347)
Q Consensus        35 ~~~l~sg~~d~~i~iw~~~-~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~  113 (347)
                      +..+++.+.+++|++||.. ++....+..+...+ .++|+|++.   ..++++..++.|.+||+.+++.        ...
T Consensus        10 ~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~---~l~~~~~~~~~i~~~d~~~~~~--------~~~   77 (331)
T 3u4y_A           10 NFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCS---NVVVTSDFCQTLVQIETQLEPP--------KVV   77 (331)
T ss_dssp             CEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSC---EEEEEESTTCEEEEEECSSSSC--------EEE
T ss_pred             CEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCC---EEEEEeCCCCeEEEEECCCCce--------eEE
Confidence            3468899999999999975 66666666666666 999998543   2445555589999999987642        133


Q ss_pred             eeeccccceEEEEEeCCCCEEEEeeCCC---cEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceE
Q 036314          114 ILRGHKASVHSIAAETSGNMVCSGSWDC---TISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVS  190 (347)
Q Consensus       114 ~~~~h~~~V~~v~~s~~~~~l~sgs~Dg---~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~  190 (347)
                      .+..+..+..+++|+|+|++++++..++   .|++||+.+..                         .+..+..+ ....
T Consensus        78 ~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~-------------------------~~~~~~~~-~~~~  131 (331)
T 3u4y_A           78 AIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNK-------------------------FISTIPIP-YDAV  131 (331)
T ss_dssp             EEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTE-------------------------EEEEEECC-TTEE
T ss_pred             ecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCC-------------------------eEEEEECC-CCcc
Confidence            4556666666699999999998655553   89999987532                         11222222 2346


Q ss_pred             EEEe-CCCCeEEEE-ecCCc-EEEEECCCCceee-----eeeeCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCC
Q 036314          191 SVVW-PQQETIYSA-SWDHS-VRTWDVEMGKDLS-----DIFCGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTS  262 (347)
Q Consensus       191 ~~~~-~~~~~l~s~-s~dg~-v~vwd~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~  262 (347)
                      +++| |++++++.+ ..++. +.+|++.....+.     .+........+.+++++..+++++..++.|++||+......
T Consensus       132 ~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~  211 (331)
T 3u4y_A          132 GIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENI  211 (331)
T ss_dssp             EEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSC
T ss_pred             ceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCccc
Confidence            7777 567655544 55588 9999987543321     12223456788898776657777778999999998743221


Q ss_pred             CCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCcc--ceeecCC----CCeE---EEEeecC-CCEE-EE
Q 036314          263 APVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWP--LSVIDSH----KDKV---LCADWWR-GDSV-IS  331 (347)
Q Consensus       263 ~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~--~~~~~~h----~~~v---~~~~~~~-~~~l-~s  331 (347)
                      ..+..+.. ...+..++|+|++.+++++...++.|.+||+.+++.  +..+..+    ....   .+++|+| |++| ++
T Consensus       212 ~~~~~~~~-~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~  290 (331)
T 3u4y_A          212 TLLNAVGT-NNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFIS  290 (331)
T ss_dssp             EEEEEEEC-SSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEE
T ss_pred             ceeeeccC-CCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEe
Confidence            11445543 456788999999986566666788999999998765  3333222    2222   3478975 6665 56


Q ss_pred             ccCCceEEEeecc
Q 036314          332 GGVDSKLCVSSGV  344 (347)
Q Consensus       332 ~s~D~~v~vw~~~  344 (347)
                      +..+++|.||+..
T Consensus       291 ~~~~~~v~v~d~~  303 (331)
T 3u4y_A          291 ANISRELKVFTIS  303 (331)
T ss_dssp             ETTTTEEEEEETT
T ss_pred             cCCCCcEEEEEec
Confidence            6667899999864

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.90  E-value=7.1e-22  Score=193.63  Aligned_cols=292  Identities=9%  Similarity=-0.009  Sum_probs=191.5

Q ss_pred             CCceeeccCC-CCCEEEEEec-CC-----eEEEEcCC-CeEEEEeeccCC------------------------ceEEEE
Q 036314           24 DDWVSAVDGS-NPGFILTGCY-DN-----LGRVWKAG-GVCTHILEGHCG------------------------AVSSVN   71 (347)
Q Consensus        24 ~~~v~~~~~~-~~~~l~sg~~-d~-----~i~iw~~~-~~~~~~l~~h~~------------------------~V~~v~   71 (347)
                      ...+.+++++ ++++|++++. |+     +|++||.. +.....+..|..                        .|.+++
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  115 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ  115 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence            4568899998 5679999998 88     99999975 555556655543                        378899


Q ss_pred             EeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCC
Q 036314           72 IIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDS  151 (347)
Q Consensus        72 ~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~  151 (347)
                      |+|++    ..|++++. ++|++||+.+++.   +    ....+..|...+.+++|+|||++|+.++ ++.|++||+.++
T Consensus       116 ~SpDg----~~l~~~~~-~~i~~~d~~~~~~---~----~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g  182 (741)
T 2ecf_A          116 WSPDA----QRLLFPLG-GELYLYDLKQEGK---A----AVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASG  182 (741)
T ss_dssp             ECTTS----SEEEEEET-TEEEEEESSSCST---T----SCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTT
T ss_pred             ECCCC----CEEEEEeC-CcEEEEECCCCCc---c----eEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCC
Confidence            99954    35777776 8999999986510   0    1123556788899999999999999887 469999998754


Q ss_pred             CCCCccceeeeccCCCccccccccccccccccCCccceEEEEe-CCCCeEEEEecCC-----------------------
Q 036314          152 DAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW-PQQETIYSASWDH-----------------------  207 (347)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~l~s~s~dg-----------------------  207 (347)
                      ....    ..... ....    ..+............+..+.| |+++.|++++.|+                       
T Consensus       183 ~~~~----~~~~~-~~~~----~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~  253 (741)
T 2ecf_A          183 RQMQ----LTADG-STTI----GNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRY  253 (741)
T ss_dssp             EEEE----CCCCC-CSSE----EESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEEC
T ss_pred             CEEE----eccCC-ccce----eccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeec
Confidence            2100    00000 0000    000000000000011355777 5788898888776                       


Q ss_pred             ----------cEEEEECCC-Cceeeeee---eCeeeEEEEeeCCCCcEEEEec----CCCcEEEEeCCCCCCCCCeEEec
Q 036314          208 ----------SVRTWDVEM-GKDLSDIF---CGKALNCIDIGGEGSALIAAGG----SDPILRIWDPRKPGTSAPVFQFS  269 (347)
Q Consensus       208 ----------~v~vwd~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~la~~~----~d~~i~iwd~~~~~~~~~~~~~~  269 (347)
                                .|.+||+.+ ++......   ....+..++| +++..+++++.    .+..|++||+....   ....+.
T Consensus       254 ~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~---~~~~~~  329 (741)
T 2ecf_A          254 PAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQ---QRVLAH  329 (741)
T ss_dssp             CBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCC---EEEEEE
T ss_pred             CCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCc---eEEEEE
Confidence                      788999988 76433221   2346778899 76654443332    36789999987532   233333


Q ss_pred             CCCC----CeeEEEeCCCCCeEEEEEeCCCcEEEEEcC-CCccceeecCCCCeEEEE-eecC-CCEE-EEccCCc--eEE
Q 036314          270 SHNS----WISACKWHNKSWFHLISASYDGKVMLWDLR-TAWPLSVIDSHKDKVLCA-DWWR-GDSV-ISGGVDS--KLC  339 (347)
Q Consensus       270 ~h~~----~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~-~~~~~~~~~~h~~~v~~~-~~~~-~~~l-~s~s~D~--~v~  339 (347)
                      .|..    .+..++|+|++. ++++++.|+.++||.++ .+. ...+..|...|..+ .|++ |++| ++++.|+  +++
T Consensus       330 ~~~~~~~~~~~~~~~spdg~-~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~  407 (741)
T 2ecf_A          330 ETSPTWVPLHNSLRFLDDGS-ILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQ  407 (741)
T ss_dssp             EECSSCCCCCSCCEECTTSC-EEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBE
T ss_pred             cCCCCcCCcCCceEECCCCe-EEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEE
Confidence            3332    346899999997 78899999999998876 344 77788888888887 4875 6565 4566666  899


Q ss_pred             Eeec
Q 036314          340 VSSG  343 (347)
Q Consensus       340 vw~~  343 (347)
                      ||+.
T Consensus       408 l~~~  411 (741)
T 2ecf_A          408 IYAV  411 (741)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9974

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.89  E-value=2e-21  Score=171.65  Aligned_cols=263  Identities=12%  Similarity=0.087  Sum_probs=179.9

Q ss_pred             CEEEEEecCCeEEEEcCC-CeEEEEee-ccCC-ceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCcccccee
Q 036314           36 GFILTGCYDNLGRVWKAG-GVCTHILE-GHCG-AVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSF  112 (347)
Q Consensus        36 ~~l~sg~~d~~i~iw~~~-~~~~~~l~-~h~~-~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~  112 (347)
                      ++|++++.|++|++||.. ++.+..+. ++.. .+..++|+|++.   ..+++++.++.|.+||+.+++..         
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~---~l~v~~~~~~~v~~~d~~~~~~~---------   69 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGR---IAYATVNKSESLVKIDLVTGETL---------   69 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSS---EEEEEETTTTEEEEEETTTCCEE---------
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCC---EEEEEeCCCCeEEEEECCCCCeE---------
Confidence            479999999999999975 56666555 3322 478899998543   35577788899999999776432         


Q ss_pred             eeee-c----cccceEEEEEeCCCCEEEEee------------CCCcEEEEecCCCCCCCccceeeeccCCCcccccccc
Q 036314          113 KILR-G----HKASVHSIAAETSGNMVCSGS------------WDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLE  175 (347)
Q Consensus       113 ~~~~-~----h~~~V~~v~~s~~~~~l~sgs------------~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (347)
                      ..+. +    |...+.+++|+|+|+++++++            .++.|.+||+.+...                      
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~----------------------  127 (337)
T 1pby_B           70 GRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSR----------------------  127 (337)
T ss_dssp             EEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEE----------------------
T ss_pred             eeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcE----------------------
Confidence            2222 1    223567899999999888876            579999999865321                      


Q ss_pred             ccccccccCCccceEEEEe-CCCCeEEEEecCCcEEEEECCCCceeeeeeeCeeeEEEEeeCCCCcEEEEecCCC-----
Q 036314          176 GEAISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEGSALIAAGGSDP-----  249 (347)
Q Consensus       176 ~~~~~~~~~h~~~v~~~~~-~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~d~-----  249 (347)
                         ...+.. ...+..++| |++++|+++  ++.|.+||+++++....+........+.+++++..+++++..++     
T Consensus       128 ---~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~  201 (337)
T 1pby_B          128 ---RKAFEA-PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATP  201 (337)
T ss_dssp             ---EEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEE
T ss_pred             ---EEEEeC-CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeee
Confidence               111111 123445666 577777776  68999999998877655543221112244555444433333333     


Q ss_pred             ------------------cEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceee
Q 036314          250 ------------------ILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVI  311 (347)
Q Consensus       250 ------------------~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~  311 (347)
                                        .|.+||+.... .. ...+..+...+.+++|+|++.+ |+++  ++.|.+||+++++.+..+
T Consensus       202 ~~~~~~~~~~~~~~~~~~~v~~~d~~~~~-~~-~~~~~~~~~~~~~~~~s~dg~~-l~~~--~~~v~~~d~~~~~~~~~~  276 (337)
T 1pby_B          202 FYTARKDIDPADPTAYRTGLLTMDLETGE-MA-MREVRIMDVFYFSTAVNPAKTR-AFGA--YNVLESFDLEKNASIKRV  276 (337)
T ss_dssp             EEEEBTTSCTTSGGGEEEEEEEEETTTCC-EE-EEEEEECSSCEEEEEECTTSSE-EEEE--ESEEEEEETTTTEEEEEE
T ss_pred             eeccccccccccccccccceEEEeCCCCC-ce-EeecCCCCCceeeEEECCCCCE-EEEe--CCeEEEEECCCCcCccee
Confidence                              46899987532 22 3455667778889999999975 5555  799999999988877776


Q ss_pred             cCCCCeEEEEeecC-CCEEEEccCCceEEEeecc
Q 036314          312 DSHKDKVLCADWWR-GDSVISGGVDSKLCVSSGV  344 (347)
Q Consensus       312 ~~h~~~v~~~~~~~-~~~l~s~s~D~~v~vw~~~  344 (347)
                      ..+ ..+.+++|++ |++|++++.|+.|.+|+..
T Consensus       277 ~~~-~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~  309 (337)
T 1pby_B          277 PLP-HSYYSVNVSTDGSTVWLGGALGDLAAYDAE  309 (337)
T ss_dssp             ECS-SCCCEEEECTTSCEEEEESBSSEEEEEETT
T ss_pred             cCC-CceeeEEECCCCCEEEEEcCCCcEEEEECc
Confidence            543 4678899985 6778888889999999864

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.89  E-value=4.2e-21  Score=187.18  Aligned_cols=277  Identities=11%  Similarity=0.085  Sum_probs=189.5

Q ss_pred             CceeeccCCCCCEEEEEecCCeEEEEcCCCeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccc-----
Q 036314           25 DWVSAVDGSNPGFILTGCYDNLGRVWKAGGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDA-----   99 (347)
Q Consensus        25 ~~v~~~~~~~~~~l~sg~~d~~i~iw~~~~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~-----   99 (347)
                      ..|.+++++++++++.+ .|+++++||..+.....+..+...+.+++|+|++.    .|+. +.|++|++|++.+     
T Consensus        82 ~~v~~~~~spd~~~~~~-~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~----~la~-~~~~~i~v~~~~~~~~~~  155 (706)
T 2z3z_A           82 FPSFRTLDAGRGLVVLF-TQGGLVGFDMLARKVTYLFDTNEETASLDFSPVGD----RVAY-VRNHNLYIARGGKLGEGM  155 (706)
T ss_dssp             CCCEEEEETTTTEEEEE-ETTEEEEEETTTTEEEEEECCTTCCTTCEECTTSS----EEEE-EETTEEEEEECBCTTSCC
T ss_pred             cCceeEEECCCCeEEEE-ECCEEEEEECCCCceEEccCCcccccCCcCCCCCC----EEEE-EECCeEEEEecCcccccC
Confidence            56899999865766655 46999999986555556667778889999999543    5666 4789999999987     


Q ss_pred             cccccCccccceeeeeecccc--------------ceEEEEEeCCCCEEEEee---------------------------
Q 036314          100 EELVNHPKKIRSFKILRGHKA--------------SVHSIAAETSGNMVCSGS---------------------------  138 (347)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~h~~--------------~V~~v~~s~~~~~l~sgs---------------------------  138 (347)
                      ++..         .....+..              .+.+++|+|||++|++++                           
T Consensus       156 g~~~---------~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~  226 (706)
T 2z3z_A          156 SRAI---------AVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYP  226 (706)
T ss_dssp             CCCE---------ESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCC
T ss_pred             CCcE---------EeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCC
Confidence            5421         11122222              247899999999999887                           


Q ss_pred             ------CCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEe-CCCCeEEEEecCC----
Q 036314          139 ------WDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW-PQQETIYSASWDH----  207 (347)
Q Consensus       139 ------~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~l~s~s~dg----  207 (347)
                            .+..|++||+.++..                       ..+.....|...+..+.| |+++.|++++.++    
T Consensus       227 ~~g~~~~~~~l~~~d~~~~~~-----------------------~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~  283 (706)
T 2z3z_A          227 MAGTPSHHVTVGIYHLATGKT-----------------------VYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNE  283 (706)
T ss_dssp             BTTSCCCEEEEEEEETTTTEE-----------------------EECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCE
T ss_pred             CCCCCCCeeEEEEEECCCCce-----------------------EeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCe
Confidence                  346688888764311                       001111246667888998 5778888888776    


Q ss_pred             -cEEEEECCCCceeeeeee--Ce----eeEEEEeeC-CCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeE-E
Q 036314          208 -SVRTWDVEMGKDLSDIFC--GK----ALNCIDIGG-EGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISA-C  278 (347)
Q Consensus       208 -~v~vwd~~~~~~~~~~~~--~~----~~~~~~~~~-~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~-v  278 (347)
                       .|.+||+.+++....+..  ..    .+..+.|++ .++.+++++..|+.++||++...+  .....+..|...+.+ +
T Consensus       284 ~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~--~~~~~l~~~~~~v~~~~  361 (706)
T 2z3z_A          284 CKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTG--RLIRQVTKGEWEVTNFA  361 (706)
T ss_dssp             EEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTS--CEEEECCCSSSCEEEEE
T ss_pred             eEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCC--CEEEecCCCCeEEEeee
Confidence             899999998844443321  11    124567866 144588888889999999875222  235566777777776 7


Q ss_pred             EeCCCCCeEEEEEeCCC----cEEEEEcCCCccceeecCCCCeEEEEeecC-CCEEEEccCC----ceEEEeec
Q 036314          279 KWHNKSWFHLISASYDG----KVMLWDLRTAWPLSVIDSHKDKVLCADWWR-GDSVISGGVD----SKLCVSSG  343 (347)
Q Consensus       279 ~~s~~~~~~l~s~s~D~----~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~l~s~s~D----~~v~vw~~  343 (347)
                      +|+|++..++++++.++    .|..||+++++ ...+. |...+.+++|+| |++|+....+    +.|.+|+.
T Consensus       362 ~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l~-~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~  433 (706)
T 2z3z_A          362 GFDPKGTRLYFESTEASPLERHFYCIDIKGGK-TKDLT-PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNI  433 (706)
T ss_dssp             EECTTSSEEEEEESSSCTTCBEEEEEETTCCC-CEESC-CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEES
T ss_pred             EEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-ceecc-CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEEC
Confidence            99999987666666665    56667777665 44443 667789999985 6676654333    56999974

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.89  E-value=5.6e-20  Score=163.66  Aligned_cols=267  Identities=10%  Similarity=0.015  Sum_probs=185.5

Q ss_pred             cCCceeeccCC-CCCEEEEEec-------CCeEEEEcCC-CeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEE
Q 036314           23 HDDWVSAVDGS-NPGFILTGCY-------DNLGRVWKAG-GVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLR   93 (347)
Q Consensus        23 h~~~v~~~~~~-~~~~l~sg~~-------d~~i~iw~~~-~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~   93 (347)
                      ....+..++++ ++++|++++.       +++|.+||.. ++.+..+... ..+..++|++++.   ..+++...+++|.
T Consensus        39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~---~l~v~~~~~~~v~  114 (353)
T 3vgz_A           39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND-LKPFGATINNTTQ---TLWFGNTVNSAVT  114 (353)
T ss_dssp             EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES-SCCCSEEEETTTT---EEEEEETTTTEEE
T ss_pred             hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC-CCcceEEECCCCC---EEEEEecCCCEEE
Confidence            34567778877 4567666663       5689999975 5566655543 4467889998654   2566777789999


Q ss_pred             EEeccccccccCccccceeeeeecccc---------ceEEEEEeCCCCEEEEee--CCCcEEEEecCCCCCCCccceeee
Q 036314           94 LWKFDAEELVNHPKKIRSFKILRGHKA---------SVHSIAAETSGNMVCSGS--WDCTISLWRTNDSDAAGNQVSIKK  162 (347)
Q Consensus        94 ~wd~~~~~~~~~~~~~~~~~~~~~h~~---------~V~~v~~s~~~~~l~sgs--~Dg~I~iwd~~~~~~~~~~~~~~~  162 (347)
                      +||+.+++.         ...+..+..         .+.+++|+|+++.++.++  .++.|.+||..+..          
T Consensus       115 ~~d~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~----------  175 (353)
T 3vgz_A          115 AIDAKTGEV---------KGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIK----------  175 (353)
T ss_dssp             EEETTTCCE---------EEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTE----------
T ss_pred             EEeCCCCee---------EEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCc----------
Confidence            999987653         223333221         268899999999777665  58899999987542          


Q ss_pred             ccCCCccccccccccccccccCCccceEEEEe-CCCCeEEEEecCCcEEEEECCCCceeeeeee-----CeeeEEEEeeC
Q 036314          163 RKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFC-----GKALNCIDIGG  236 (347)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~-----~~~~~~~~~~~  236 (347)
                                     ....+..+...+.+++| ++++.++.++.++.|.+||+.+++....+..     ...+..+++++
T Consensus       176 ---------------~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~  240 (353)
T 3vgz_A          176 ---------------LKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDT  240 (353)
T ss_dssp             ---------------EEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEET
T ss_pred             ---------------eEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECC
Confidence                           12222222233445565 6788899999999999999999887766543     22356788888


Q ss_pred             CCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecCCCC
Q 036314          237 EGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKD  316 (347)
Q Consensus       237 ~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h~~  316 (347)
                      ++..++++...++.|.+||+....   ....+..+.  ...++|+|++.+++++...++.|.+||.++++.+..+..+ .
T Consensus       241 dg~~l~~~~~~~~~v~~~d~~~~~---~~~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~-~  314 (353)
T 3vgz_A          241 ARQRAFITDSKAAEVLVVDTRNGN---ILAKVAAPE--SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTP-T  314 (353)
T ss_dssp             TTTEEEEEESSSSEEEEEETTTCC---EEEEEECSS--CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECC-S
T ss_pred             CCCEEEEEeCCCCEEEEEECCCCc---EEEEEEcCC--CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecC-C
Confidence            777666666677999999986532   233443333  2568999999876777778999999999998877777653 4


Q ss_pred             eEEEEeecC-CCEEEEcc
Q 036314          317 KVLCADWWR-GDSVISGG  333 (347)
Q Consensus       317 ~v~~~~~~~-~~~l~s~s  333 (347)
                      .+.+++|++ |++|..+.
T Consensus       315 ~~~~~~~s~dg~~l~v~~  332 (353)
T 3vgz_A          315 HPNSLALSADGKTLYVSV  332 (353)
T ss_dssp             EEEEEEECTTSCEEEEEE
T ss_pred             CCCeEEEcCCCCEEEEEE
Confidence            788999985 66544433

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.88  E-value=8e-21  Score=192.96  Aligned_cols=324  Identities=10%  Similarity=-0.057  Sum_probs=215.9

Q ss_pred             EEeccCCCCcCCCCCcCCceeeccCC-CCCEEEEEecC------CeEEEEcCCCeEEEEeeccCCce-------EEEEEe
Q 036314            8 YIKAVAPQKEEEPSLHDDWVSAVDGS-NPGFILTGCYD------NLGRVWKAGGVCTHILEGHCGAV-------SSVNII   73 (347)
Q Consensus         8 ~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~l~sg~~d------~~i~iw~~~~~~~~~l~~h~~~V-------~~v~~~   73 (347)
                      |+.++.-........|...+.++++| +|++||+++.+      .+|++|+..+...+.+.+|...+       .+++|+
T Consensus        36 ~~~~~~gg~~~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~~~~lt~~~~~~~~~~~~~~~~~~S  115 (1045)
T 1k32_A           36 WEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFD  115 (1045)
T ss_dssp             EEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEEC
T ss_pred             EEEECCCCcEEEeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCCeEEcccCCCcccccccccccccCC
Confidence            44444333334456799999999998 56688887654      37999998765677899999888       899999


Q ss_pred             ecCCCceEEEEEccCC------CcEEEEeccccccccCccc---------------------------------------
Q 036314           74 KSDGLKYVTVATASKD------QTLRLWKFDAEELVNHPKK---------------------------------------  108 (347)
Q Consensus        74 ~~~~~~~~~l~s~s~D------g~v~~wd~~~~~~~~~~~~---------------------------------------  108 (347)
                      |++    ..+++++.+      ..|.+|++.+++.......                                       
T Consensus       116 pDg----~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~  191 (1045)
T 1k32_A          116 PDG----NLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEV  191 (1045)
T ss_dssp             TTC----CEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEE
T ss_pred             CCC----EEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEEC
Confidence            954    256777754      3577777766542210000                                       


Q ss_pred             -cceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccc-------e-eeeccCC-------Cccccc
Q 036314          109 -IRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQV-------S-IKKRKGN-------NQVEEP  172 (347)
Q Consensus       109 -~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~-------~-~~~~~~~-------~~~~~~  172 (347)
                       ......+.+|...+.++.|+++ .++++++.|++++||.+..........       . .....+.       ..+...
T Consensus       192 ~~~~~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~~~~~SpDG~~la~~~~~~i~~~  270 (1045)
T 1k32_A          192 NSGAFKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYYPRHLNTDGRRILFSKGGSIYIF  270 (1045)
T ss_dssp             ETTEEEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCCSSCEEEEEESSSCEEEEETTEEEEE
T ss_pred             CCCCeEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCCCcceeeEcCCCCEEEEEeCCEEEEe
Confidence             0122345789999999999988 777788899999999864311000000       0 0000000       000000


Q ss_pred             cccccccccccC-----------CccceEEEEe--CCCCeEEEEecCCcEEEEECCCCceeeeeeeCe-eeEEEEeeCCC
Q 036314          173 QLEGEAISTLVG-----------HTQCVSSVVW--PQQETIYSASWDHSVRTWDVEMGKDLSDIFCGK-ALNCIDIGGEG  238 (347)
Q Consensus       173 ~~~~~~~~~~~~-----------h~~~v~~~~~--~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~  238 (347)
                      ......+..+.+           |...+..+.|  |+++.|++++ ++.+.+|++..+.......... .+..+.|+  +
T Consensus       271 d~~~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s--d  347 (1045)
T 1k32_A          271 NPDTEKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGD--T  347 (1045)
T ss_dssp             CTTTCCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEECSCCSCEEEEEECSS--S
T ss_pred             cCCceEeeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEEccCCCcceEEeeeEc--C
Confidence            001111112222           3345777887  4677788777 8899999998776433222233 56778886  4


Q ss_pred             CcEEEEecCCCcEE-EEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecCCCCe
Q 036314          239 SALIAAGGSDPILR-IWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDK  317 (347)
Q Consensus       239 ~~~la~~~~d~~i~-iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h~~~  317 (347)
                      +..++.++.++.+. +||+...    ....+.+|...+..++|+|++. +|++++.++.|++||+++++....+.+|.+.
T Consensus       348 g~~l~~~s~~~~l~~~~d~~~~----~~~~l~~~~~~~~~~~~SpDG~-~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~  422 (1045)
T 1k32_A          348 KVAFIHGTREGDFLGIYDYRTG----KAEKFEENLGNVFAMGVDRNGK-FAVVANDRFEIMTVDLETGKPTVIERSREAM  422 (1045)
T ss_dssp             EEEEEEEETTEEEEEEEETTTC----CEEECCCCCCSEEEEEECTTSS-EEEEEETTSEEEEEETTTCCEEEEEECSSSC
T ss_pred             CCeEEEEECCCceEEEEECCCC----CceEecCCccceeeeEECCCCC-EEEEECCCCeEEEEECCCCceEEeccCCCCC
Confidence            55667777788888 8897642    2344557888899999999996 5899999999999999998877777789999


Q ss_pred             EEEEeecC-CCEEEEccCC----------ceEEEeecc
Q 036314          318 VLCADWWR-GDSVISGGVD----------SKLCVSSGV  344 (347)
Q Consensus       318 v~~~~~~~-~~~l~s~s~D----------~~v~vw~~~  344 (347)
                      +.+++|+| |++||+++.+          +.|++|+..
T Consensus       423 v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~  460 (1045)
T 1k32_A          423 ITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDME  460 (1045)
T ss_dssp             CCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETT
T ss_pred             ccceEECCCCCeEEEEecCccccccCCCCCeEEEEECC
Confidence            99999985 6778887765          499999853

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.88  E-value=4.9e-21  Score=187.65  Aligned_cols=275  Identities=7%  Similarity=0.040  Sum_probs=191.1

Q ss_pred             CceeeccCC-CCCEEEEEecCCeEEEEcCCCe---EEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEecccc
Q 036314           25 DWVSAVDGS-NPGFILTGCYDNLGRVWKAGGV---CTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAE  100 (347)
Q Consensus        25 ~~v~~~~~~-~~~~l~sg~~d~~i~iw~~~~~---~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~  100 (347)
                      ..|..++++ ++++|++++. ++|++||..+.   ....+..|...+..++|+|++.    .|+.++ +++|++||+.++
T Consensus       109 ~~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~----~la~~~-~~~i~~~d~~~g  182 (741)
T 2ecf_A          109 TGIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGG----FVSFIR-GRNLWVIDLASG  182 (741)
T ss_dssp             EESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSS----EEEEEE-TTEEEEEETTTT
T ss_pred             cCcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCC----EEEEEe-CCcEEEEecCCC
Confidence            347888988 5568888876 99999998654   5567888888999999999543    577766 469999999876


Q ss_pred             ccccCccccceeeeeecccc----------------ceEEEEEeCCCCEEEEeeCCC-----------------------
Q 036314          101 ELVNHPKKIRSFKILRGHKA----------------SVHSIAAETSGNMVCSGSWDC-----------------------  141 (347)
Q Consensus       101 ~~~~~~~~~~~~~~~~~h~~----------------~V~~v~~s~~~~~l~sgs~Dg-----------------------  141 (347)
                      +..         .....+..                .+.+++|+|||++|+.++.|+                       
T Consensus       183 ~~~---------~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~  253 (741)
T 2ecf_A          183 RQM---------QLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRY  253 (741)
T ss_dssp             EEE---------ECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEEC
T ss_pred             CEE---------EeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeec
Confidence            432         11112222                147799999999999988776                       


Q ss_pred             ----------cEEEEecCC-CCCCCccceeeeccCCCccccccccccccccccCCccceEEEEeCCCCeEEEEec-----
Q 036314          142 ----------TISLWRTND-SDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWPQQETIYSASW-----  205 (347)
Q Consensus       142 ----------~I~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~-----  205 (347)
                                .|.+||+.+ +...                       .+.....|...+..+.||+++.|+.++.     
T Consensus       254 ~~~g~~~~~~~l~~~d~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~pDg~~l~~~~~~~~~~  310 (741)
T 2ecf_A          254 PAAGDANVQVKLGVISPAEQAQTQ-----------------------WIDLGKEQDIYLARVNWRDPQHLSFQRQSRDQK  310 (741)
T ss_dssp             CBTTSCCCEEEEEEECSSTTCCCE-----------------------EECCCSCSSEEEEEEEEEETTEEEEEEEETTSS
T ss_pred             CCCCCCCCeeEEEEEECCCCCceE-----------------------EecCCCCcceEEEEEEeCCCCEEEEEEecccCC
Confidence                      667777654 3210                       0000114667788888877788876654     


Q ss_pred             CCcEEEEECCCCceeeeeeeCe-----eeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEE-E
Q 036314          206 DHSVRTWDVEMGKDLSDIFCGK-----ALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISAC-K  279 (347)
Q Consensus       206 dg~v~vwd~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v-~  279 (347)
                      +..|.+||+.+++....+....     .+..+.|++++. +++++..|+.++||.+...+  . ...+..|...+.++ .
T Consensus       311 ~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~-~~~~~~~~g~~~l~~~~~~~--~-~~~l~~~~~~v~~~~~  386 (741)
T 2ecf_A          311 KLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGS-ILWSSERTGFQHLYRIDSKG--K-AAALTHGNWSVDELLA  386 (741)
T ss_dssp             EEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSC-EEEEECTTSSCEEEEECSSS--C-EEESCCSSSCEEEEEE
T ss_pred             eEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCe-EEEEecCCCccEEEEEcCCC--C-eeeeeecceEEEeEeE
Confidence            5679999999887654443222     234678877654 88888889988888765322  2 56777787778887 5


Q ss_pred             eCCCCCeEEEEEeCCC--cEEEEEcCC-CccceeecCCCCeEEEEeecC-CCEEEEccCC----ceEEEee
Q 036314          280 WHNKSWFHLISASYDG--KVMLWDLRT-AWPLSVIDSHKDKVLCADWWR-GDSVISGGVD----SKLCVSS  342 (347)
Q Consensus       280 ~s~~~~~~l~s~s~D~--~i~lwd~~~-~~~~~~~~~h~~~v~~~~~~~-~~~l~s~s~D----~~v~vw~  342 (347)
                      |+|++..++++++.|+  .++||+++. +.....+.. .+.+..+.|+| |++|+....+    ..+.+|+
T Consensus       387 ~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~  456 (741)
T 2ecf_A          387 VDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLSK-APGMHSASFARNASVYVDSWSNNSTPPQIELFR  456 (741)
T ss_dssp             EETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECCC-SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEE
T ss_pred             EeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeeccc-CCCceEEEECCCCCEEEEEecCCCCCCeEEEEE
Confidence            9999987666777776  899999864 555666665 56788999985 6666544322    4566665

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.88  E-value=3.6e-20  Score=165.01  Aligned_cols=274  Identities=10%  Similarity=0.055  Sum_probs=174.2

Q ss_pred             CCeEEEEcC---CCeEEE-EeeccCCceEEEEEeecCCCceEEEEEccC---CCcEEEEeccccccccCccccceeeeee
Q 036314           44 DNLGRVWKA---GGVCTH-ILEGHCGAVSSVNIIKSDGLKYVTVATASK---DQTLRLWKFDAEELVNHPKKIRSFKILR  116 (347)
Q Consensus        44 d~~i~iw~~---~~~~~~-~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~---Dg~v~~wd~~~~~~~~~~~~~~~~~~~~  116 (347)
                      ++.|++|+.   .+.... ....+...+..++|+|++    . |++++.   ++.|++|++..++.       +.+..+.
T Consensus        15 ~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg----~-l~~~~~~~~~~~v~~~~~~~g~~-------~~~~~~~   82 (347)
T 3hfq_A           15 SQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKD----C-LYSVDKEDDEGGIAAWQIDGQTA-------HKLNTVV   82 (347)
T ss_dssp             CCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTC----E-EEEEEEETTEEEEEEEEEETTEE-------EEEEEEE
T ss_pred             CCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCC----e-EEEEEecCCCceEEEEEecCCcE-------EEeeeee
Confidence            456777764   244432 344566777889999843    3 444433   68999999965542       2334445


Q ss_pred             ccccceEEEEEeCCCCEEEEee-CCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEe-
Q 036314          117 GHKASVHSIAAETSGNMVCSGS-WDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW-  194 (347)
Q Consensus       117 ~h~~~V~~v~~s~~~~~l~sgs-~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-  194 (347)
                      .|...+..++|+|||++|++++ .+++|++|++.....   ..........         +.... ...+...+.+++| 
T Consensus        83 ~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~---~~~~~~~~~~---------~~~p~-~~~~~~~~~~~~~s  149 (347)
T 3hfq_A           83 APGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGA---LTLTDTVQHS---------GHGPR-PEQDGSHIHYTDLT  149 (347)
T ss_dssp             EESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSC---EEEEEEEECC---------CCCSS-TTCSSCCEEEEEEC
T ss_pred             cCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCC---eeecceeecC---------CCCCC-ccccCCCceEEEEC
Confidence            6777888999999999888877 789999999863211   0000000000         00000 0112234677887 


Q ss_pred             CCCCeEEEEecCCcEEEEECC-CCceee--eee--eCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCC-CCCCCeEEe
Q 036314          195 PQQETIYSASWDHSVRTWDVE-MGKDLS--DIF--CGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKP-GTSAPVFQF  268 (347)
Q Consensus       195 ~~~~~l~s~s~dg~v~vwd~~-~~~~~~--~~~--~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~-~~~~~~~~~  268 (347)
                      |+++.+++...++.|.+||+. +++...  .+.  .+..+..++++|++..+++++..++.+++|++... +.......+
T Consensus       150 pdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~  229 (347)
T 3hfq_A          150 PDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIV  229 (347)
T ss_dssp             TTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEE
T ss_pred             CCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeee
Confidence            567755566668899999998 443221  111  22346678998776656677778899999998641 111112222


Q ss_pred             cCCC------CCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCC---ccceeecCCCCeEEEEeecC-CCEEEEccC-Cce
Q 036314          269 SSHN------SWISACKWHNKSWFHLISASYDGKVMLWDLRTA---WPLSVIDSHKDKVLCADWWR-GDSVISGGV-DSK  337 (347)
Q Consensus       269 ~~h~------~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~---~~~~~~~~h~~~v~~~~~~~-~~~l~s~s~-D~~  337 (347)
                      ....      ..+..++|+|++.+++++...++.|.+||++..   +.+..+..|...+.+++|+| |++|++++. ++.
T Consensus       230 ~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~  309 (347)
T 3hfq_A          230 KTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDN  309 (347)
T ss_dssp             ESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTE
T ss_pred             eecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCc
Confidence            2222      357889999999876677788999999999732   33455566666788999985 666766654 599


Q ss_pred             EEEee
Q 036314          338 LCVSS  342 (347)
Q Consensus       338 v~vw~  342 (347)
                      |.+|+
T Consensus       310 v~v~~  314 (347)
T 3hfq_A          310 ATLYA  314 (347)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            99994

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.88  E-value=2.4e-21  Score=189.33  Aligned_cols=286  Identities=11%  Similarity=0.041  Sum_probs=183.0

Q ss_pred             CceeeccCCC-CCEEEEEecCCeEEEEcCC-CeEEEEeeccCC---ceEEEEEeecCCCceEEEEEccCC---------C
Q 036314           25 DWVSAVDGSN-PGFILTGCYDNLGRVWKAG-GVCTHILEGHCG---AVSSVNIIKSDGLKYVTVATASKD---------Q   90 (347)
Q Consensus        25 ~~v~~~~~~~-~~~l~sg~~d~~i~iw~~~-~~~~~~l~~h~~---~V~~v~~~~~~~~~~~~l~s~s~D---------g   90 (347)
                      ..+.++++++ ++++++ +.|++|++||.. +.+...+.+|..   .|.+++|+|++    ..|++++.+         +
T Consensus        17 ~~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg----~~l~~~~~~~~~~~~~~~~   91 (723)
T 1xfd_A           17 IHDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDR----EYALFSYNVEPIYQHSYTG   91 (723)
T ss_dssp             CCCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTS----SEEEEEESCCCCSSSCCCS
T ss_pred             ccccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCC----CEEEEEecCccceeeccee
Confidence            3467788884 556655 789999999974 566667777765   48999999954    367888764         7


Q ss_pred             cEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccc
Q 036314           91 TLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVE  170 (347)
Q Consensus        91 ~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~  170 (347)
                      .+.+||+.+++.       +.+....+|...+..++|+|||+.|+.++. +.|++|++.++....    +......    
T Consensus        92 ~i~~~d~~~~~~-------~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~----~~~~~~~----  155 (723)
T 1xfd_A           92 YYVLSKIPHGDP-------QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIR----VVSTGKE----  155 (723)
T ss_dssp             EEEEEESSSCCC-------EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEE----EECCCBT----
T ss_pred             eEEEEECCCCce-------EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEE----EecCCCC----
Confidence            888999987642       122223356666888999999999998876 799999987643210    0000000    


Q ss_pred             cccccccccccccCCc---------cceEEEEe-CCCCeEEEEecCC---------------------------------
Q 036314          171 EPQLEGEAISTLVGHT---------QCVSSVVW-PQQETIYSASWDH---------------------------------  207 (347)
Q Consensus       171 ~~~~~~~~~~~~~~h~---------~~v~~~~~-~~~~~l~s~s~dg---------------------------------  207 (347)
                              -..+.++.         ..+.++.| |+++.|++++.|+                                 
T Consensus       156 --------~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~  227 (723)
T 1xfd_A          156 --------GVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPS  227 (723)
T ss_dssp             --------TTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCE
T ss_pred             --------CceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCe
Confidence                    00000111         12367888 6788888887653                                 


Q ss_pred             -cEEEEECCCCceeeeeee-------CeeeEEEEeeCCCCcEEEEec----CCCcEEEEeCCCCCCCCCeEEe-cCCCCC
Q 036314          208 -SVRTWDVEMGKDLSDIFC-------GKALNCIDIGGEGSALIAAGG----SDPILRIWDPRKPGTSAPVFQF-SSHNSW  274 (347)
Q Consensus       208 -~v~vwd~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~la~~~----~d~~i~iwd~~~~~~~~~~~~~-~~h~~~  274 (347)
                       +|.+||+.+++....+..       ...+..++|+|++ .++++..    .+..|++||+....   ....+ ..+..+
T Consensus       228 ~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg-~~l~~~~~~~~~~~~i~~~d~~~g~---~~~~~~~~~~~~  303 (723)
T 1xfd_A          228 ISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATST-KVAVTWLNRAQNVSILTLCDATTGV---CTKKHEDESEAW  303 (723)
T ss_dssp             EEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSS-EEEEEEEETTSCEEEEEEEETTTCC---EEEEEEEECSSC
T ss_pred             eEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCC-eEEEEEEcCCCCeEEEEEEeCCCCc---ceEEEEeccCCE
Confidence             799999988775444432       3456788997765 4555543    34689999987432   12222 234455


Q ss_pred             ee----EEEeCCCCCeEEEE-EeCCC------cEEEEE-cCCCcc--ceeecCCCCeEEE-EeecC-CCEEEEccC-C--
Q 036314          275 IS----ACKWHNKSWFHLIS-ASYDG------KVMLWD-LRTAWP--LSVIDSHKDKVLC-ADWWR-GDSVISGGV-D--  335 (347)
Q Consensus       275 v~----~v~~s~~~~~~l~s-~s~D~------~i~lwd-~~~~~~--~~~~~~h~~~v~~-~~~~~-~~~l~s~s~-D--  335 (347)
                      +.    .++|+|+|..+++. +..|+      .|.+|| ..+++.  ...+..+...+.. +.|+| |++|+..+. |  
T Consensus       304 ~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~  383 (723)
T 1xfd_A          304 LHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLP  383 (723)
T ss_dssp             CCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCT
T ss_pred             EeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCC
Confidence            54    78999999864443 55677      466677 344331  5555544445554 68975 677765444 4  


Q ss_pred             ceEEEeec
Q 036314          336 SKLCVSSG  343 (347)
Q Consensus       336 ~~v~vw~~  343 (347)
                      ++++||+.
T Consensus       384 ~~~~l~~~  391 (723)
T 1xfd_A          384 RRRQLYSA  391 (723)
T ss_dssp             TCCEEEEE
T ss_pred             cceEEEEE
Confidence            88999974

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.87  E-value=1.1e-20  Score=191.97  Aligned_cols=284  Identities=8%  Similarity=-0.011  Sum_probs=203.4

Q ss_pred             CCcCCceeeccCCCCCEEEEEecCCeEEEEcC--CCeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEecc
Q 036314           21 SLHDDWVSAVDGSNPGFILTGCYDNLGRVWKA--GGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFD   98 (347)
Q Consensus        21 ~~h~~~v~~~~~~~~~~l~sg~~d~~i~iw~~--~~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~   98 (347)
                      .+|...+.++.++++.++++++.|++++||..  .+...+.+.+|.. +...+|+|++.    .|+.+ .++.|.+|++.
T Consensus       200 ~~~~~~v~~~~~s~d~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~~-~~~~~~SpDG~----~la~~-~~~~i~~~d~~  273 (1045)
T 1k32_A          200 VDMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDLRKHTSFTD-YYPRHLNTDGR----RILFS-KGGSIYIFNPD  273 (1045)
T ss_dssp             ECCSSCCEEEEEETTEEEEEECTTSSCEEEEEETTSCSCEECCCCCS-SCEEEEEESSS----CEEEE-ETTEEEEECTT
T ss_pred             cCCCCcccceEEeCCEEEEEEeccCceEEEEEeCCCCcceEecCCCC-cceeeEcCCCC----EEEEE-eCCEEEEecCC
Confidence            46888888888876667778888999999974  3544556666654 66779998553    46665 58999999984


Q ss_pred             ccccccCccc-cceeeeeeccccceEEEEEe-CCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccc
Q 036314           99 AEELVNHPKK-IRSFKILRGHKASVHSIAAE-TSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEG  176 (347)
Q Consensus        99 ~~~~~~~~~~-~~~~~~~~~h~~~V~~v~~s-~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (347)
                      ..++...... .........|...+.+++|+ |||+.++.++ ++.|.+|++....                        
T Consensus       274 ~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~------------------------  328 (1045)
T 1k32_A          274 TEKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTY------------------------  328 (1045)
T ss_dssp             TCCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSB------------------------
T ss_pred             ceEeeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCc------------------------
Confidence            3322100000 00000112356678999999 9999998887 8899999876431                        


Q ss_pred             cccccccCCcc-ceEEEEeCCCCeEEEEecCCcEE-EEECCCCceeeeeeeCeeeEEEEeeCCCCcEEEEecCCCcEEEE
Q 036314          177 EAISTLVGHTQ-CVSSVVWPQQETIYSASWDHSVR-TWDVEMGKDLSDIFCGKALNCIDIGGEGSALIAAGGSDPILRIW  254 (347)
Q Consensus       177 ~~~~~~~~h~~-~v~~~~~~~~~~l~s~s~dg~v~-vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~d~~i~iw  254 (347)
                        ...+..|.. .+..+.|++++.|++++.++.+. +||+..+...........+..++++|+ +..|++++.++.|++|
T Consensus       329 --~~~~~~~~~~~~~~~~~sdg~~l~~~s~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpD-G~~la~~~~~~~v~~~  405 (1045)
T 1k32_A          329 --VLKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRN-GKFAVVANDRFEIMTV  405 (1045)
T ss_dssp             --EEECSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTT-SSEEEEEETTSEEEEE
T ss_pred             --eEEccCCCcceEEeeeEcCCCeEEEEECCCceEEEEECCCCCceEecCCccceeeeEECCC-CCEEEEECCCCeEEEE
Confidence              112344555 67888888556788888888888 999887654322222245778889765 5677888899999999


Q ss_pred             eCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCC----------CcEEEEEcCCCccceeecCCCCeEEEEeec
Q 036314          255 DPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYD----------GKVMLWDLRTAWPLSVIDSHKDKVLCADWW  324 (347)
Q Consensus       255 d~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D----------~~i~lwd~~~~~~~~~~~~h~~~v~~~~~~  324 (347)
                      |+...   .....+.+|...+.+++|+||+.+ |++++.+          +.|++||+.+++ +..+..|...+.++.|+
T Consensus       406 d~~tg---~~~~~~~~~~~~v~~~~~SpDG~~-la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~s  480 (1045)
T 1k32_A          406 DLETG---KPTVIERSREAMITDFTISDNSRF-IAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFD  480 (1045)
T ss_dssp             ETTTC---CEEEEEECSSSCCCCEEECTTSCE-EEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEEC
T ss_pred             ECCCC---ceEEeccCCCCCccceEECCCCCe-EEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEc
Confidence            99743   223444578888999999999975 6666654          489999999876 67778888889999998


Q ss_pred             C-CCEEEEccCCceEEEeec
Q 036314          325 R-GDSVISGGVDSKLCVSSG  343 (347)
Q Consensus       325 ~-~~~l~s~s~D~~v~vw~~  343 (347)
                      | |++|+.++.++...+|+.
T Consensus       481 pdG~~l~~~s~~~~~~~~~~  500 (1045)
T 1k32_A          481 ADSKNLYYLSYRSLDPSPDR  500 (1045)
T ss_dssp             TTSCEEEEEESCCCCCEECS
T ss_pred             CCCCEEEEEecccCCcCcch
Confidence            5 778999888888877764

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.87  E-value=2.4e-20  Score=161.19  Aligned_cols=222  Identities=9%  Similarity=0.083  Sum_probs=159.9

Q ss_pred             EEccCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCC-CCCCCccceeee
Q 036314           84 ATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTND-SDAAGNQVSIKK  162 (347)
Q Consensus        84 ~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~-~~~~~~~~~~~~  162 (347)
                      .+++.|++|++||+.+++.          ..+..|...|.+++|+|+|++|++++ ++.|++||+.+ ...         
T Consensus        16 ~~~~~~~~i~~~d~~~~~~----------~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~---------   75 (297)
T 2ojh_A           16 PGGSMRSSIEIFNIRTRKM----------RVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSP---------   75 (297)
T ss_dssp             --CCCCEEEEEEETTTTEE----------EEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSC---------
T ss_pred             CCCCcceeEEEEeCCCCce----------eeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCc---------
Confidence            3567899999999976542          24556889999999999999999876 88999999875 321         


Q ss_pred             ccCCCccccccccccccccccCC-ccceEEEEe-CCCCeEEEEe--cCCcEEEEEC--CCCceeeeeeeCeeeEEEEeeC
Q 036314          163 RKGNNQVEEPQLEGEAISTLVGH-TQCVSSVVW-PQQETIYSAS--WDHSVRTWDV--EMGKDLSDIFCGKALNCIDIGG  236 (347)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~-~~~~~l~s~s--~dg~v~vwd~--~~~~~~~~~~~~~~~~~~~~~~  236 (347)
                                      .....+| ...+.++.| |+++.|++++  .++..+||.+  .++. ...+.....+..+.+++
T Consensus        76 ----------------~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~sp  138 (297)
T 2ojh_A           76 ----------------EKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNLPSYWHGWSP  138 (297)
T ss_dssp             ----------------EECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSSSSEEEEEECT
T ss_pred             ----------------eEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecCCCccceEECC
Confidence                            1112223 245666777 5778888888  4455666654  4443 34444444577788987


Q ss_pred             CCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcC-CCccceeecCCC
Q 036314          237 EGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLR-TAWPLSVIDSHK  315 (347)
Q Consensus       237 ~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~-~~~~~~~~~~h~  315 (347)
                      ++..+++++..++.++||+++...  .....+..|...+.++.|+|++..+++++..|+.++||+++ .+..+..+..|.
T Consensus       139 dg~~l~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  216 (297)
T 2ojh_A          139 DGKSFTYCGIRDQVFDIYSMDIDS--GVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSA  216 (297)
T ss_dssp             TSSEEEEEEEETTEEEEEEEETTT--CCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCS
T ss_pred             CCCEEEEEECCCCceEEEEEECCC--CcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCC
Confidence            766565578889999999865322  23456677888899999999997655555579999999986 455677788888


Q ss_pred             CeEEEEeecC-CCEEEEccCC-----------ceEEEeecc
Q 036314          316 DKVLCADWWR-GDSVISGGVD-----------SKLCVSSGV  344 (347)
Q Consensus       316 ~~v~~~~~~~-~~~l~s~s~D-----------~~v~vw~~~  344 (347)
                      ..+.++.|+| |++|+.++.|           +.|.+|+..
T Consensus       217 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~  257 (297)
T 2ojh_A          217 YGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMD  257 (297)
T ss_dssp             EEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETT
T ss_pred             cccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecC
Confidence            8899999985 7778887765           669999753

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.86  E-value=2.5e-20  Score=171.28  Aligned_cols=205  Identities=13%  Similarity=0.125  Sum_probs=142.7

Q ss_pred             CCceeeccCC-CCCEEEEEecCCeEEEEcCC------------CeEEE----EeeccCCceEEEEEeecCCCceEEEE--
Q 036314           24 DDWVSAVDGS-NPGFILTGCYDNLGRVWKAG------------GVCTH----ILEGHCGAVSSVNIIKSDGLKYVTVA--   84 (347)
Q Consensus        24 ~~~v~~~~~~-~~~~l~sg~~d~~i~iw~~~------------~~~~~----~l~~h~~~V~~v~~~~~~~~~~~~l~--   84 (347)
                      ...++.++++ +++++++++.|+ +++|+..            .....    ....|.+.|.+++|++++    .+|+  
T Consensus        36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg----~~lav~  110 (434)
T 2oit_A           36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDN----LTLSAC  110 (434)
T ss_dssp             CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTS----CEEEEE
T ss_pred             CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCC----CEEEEE
Confidence            4457777776 567999999888 8887531            01110    112356789999999854    3577  


Q ss_pred             --EccCCCcEEEEeccccccc--cCccccceeeeeeccccceEEEEEeCC-CCEEEEeeCCCcEEEEecCCCCCCCccce
Q 036314           85 --TASKDQTLRLWKFDAEELV--NHPKKIRSFKILRGHKASVHSIAAETS-GNMVCSGSWDCTISLWRTNDSDAAGNQVS  159 (347)
Q Consensus        85 --s~s~Dg~v~~wd~~~~~~~--~~~~~~~~~~~~~~h~~~V~~v~~s~~-~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~  159 (347)
                        +++.|++|++||+.+....  ...+....+..+.+|...|.+++|+|+ +.+|++++.||+|++||+++..       
T Consensus       111 ~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~-------  183 (434)
T 2oit_A          111 MMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETV-------  183 (434)
T ss_dssp             EEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSE-------
T ss_pred             EeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCc-------
Confidence              8999999999998754100  000112234567789999999999998 7899999999999999987531       


Q ss_pred             eeeccCCCccccccccccccccccCCccceEEEEe-CCCCeEEEEecCCcEEEEECCCCceeeeeee--------CeeeE
Q 036314          160 IKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFC--------GKALN  230 (347)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~--------~~~~~  230 (347)
                                        ......+|...|.+++| +++++|++++.||+|++||++ +.....+..        ...+.
T Consensus       184 ------------------~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~  244 (434)
T 2oit_A          184 ------------------KVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVL  244 (434)
T ss_dssp             ------------------EEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEE
T ss_pred             ------------------ceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEE
Confidence                              12234568889999999 578899999999999999998 444433321        12677


Q ss_pred             EEEeeCCCCcEEEEecCCC------cEEEEeCCCC
Q 036314          231 CIDIGGEGSALIAAGGSDP------ILRIWDPRKP  259 (347)
Q Consensus       231 ~~~~~~~~~~~la~~~~d~------~i~iwd~~~~  259 (347)
                      ++.+.++...+++....||      .+++||+++.
T Consensus       245 ~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          245 DVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK  279 (434)
T ss_dssp             EEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred             EEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence            8888765433333333443      3899999754

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.86  E-value=3.5e-19  Score=157.35  Aligned_cols=229  Identities=12%  Similarity=0.079  Sum_probs=163.4

Q ss_pred             EEEEEccCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeC-CCcEEEEecCCCCCCCccce
Q 036314           81 VTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSW-DCTISLWRTNDSDAAGNQVS  159 (347)
Q Consensus        81 ~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~-Dg~I~iwd~~~~~~~~~~~~  159 (347)
                      ..+++++.+++|++||+.++++         ...+..+..++ .++|+|+|++++.++. ++.|.+||..+....     
T Consensus        11 ~~~v~~~~~~~v~~~d~~~~~~---------~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~-----   75 (331)
T 3u4y_A           11 FGIVVEQHLRRISFFSTDTLEI---------LNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPK-----   75 (331)
T ss_dssp             EEEEEEGGGTEEEEEETTTCCE---------EEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCE-----
T ss_pred             EEEEEecCCCeEEEEeCcccce---------eeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCcee-----
Confidence            4678899999999999987653         23344455566 9999999996665555 899999998754210     


Q ss_pred             eeeccCCCccccccccccccccccCCccceEEEEe-CCCCeEEEEecCC---cEEEEECCCCceeeeeeeCeeeEEEEee
Q 036314          160 IKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW-PQQETIYSASWDH---SVRTWDVEMGKDLSDIFCGKALNCIDIG  235 (347)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~l~s~s~dg---~v~vwd~~~~~~~~~~~~~~~~~~~~~~  235 (347)
                                         ...+..+..+..+++| |++++++++..++   .|.+||+.+++.+..+..+.....++++
T Consensus        76 -------------------~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s  136 (331)
T 3u4y_A           76 -------------------VVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAIS  136 (331)
T ss_dssp             -------------------EEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEEC
T ss_pred             -------------------EEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCCccceEEC
Confidence                               1222333444443666 6778888555553   8999999998877777666667889998


Q ss_pred             CCCCcEEEEecCCCc-EEEEeCCCCCCCCCe-EEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCcc---cee
Q 036314          236 GEGSALIAAGGSDPI-LRIWDPRKPGTSAPV-FQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWP---LSV  310 (347)
Q Consensus       236 ~~~~~~la~~~~d~~-i~iwd~~~~~~~~~~-~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~---~~~  310 (347)
                      |++..++++...++. |.+|++...+..... .....+......++|+|++.++++++..++.|.+||+++++.   +..
T Consensus       137 pdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~  216 (331)
T 3u4y_A          137 PNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNA  216 (331)
T ss_dssp             TTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEE
T ss_pred             CCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeee
Confidence            887667777777788 999998743221111 122234456789999999987677777899999999998887   666


Q ss_pred             ecCCCCeEEEEeecC-CCEE-EEccCCceEEEeecc
Q 036314          311 IDSHKDKVLCADWWR-GDSV-ISGGVDSKLCVSSGV  344 (347)
Q Consensus       311 ~~~h~~~v~~~~~~~-~~~l-~s~s~D~~v~vw~~~  344 (347)
                      +..+ ..+.+++|+| |++| ++...++.|.+|+..
T Consensus       217 ~~~~-~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~  251 (331)
T 3u4y_A          217 VGTN-NLPGTIVVSRDGSTVYVLTESTVDVFNFNQL  251 (331)
T ss_dssp             EECS-SCCCCEEECTTSSEEEEECSSEEEEEEEETT
T ss_pred             ccCC-CCCceEEECCCCCEEEEEEcCCCEEEEEECC
Confidence            6643 5678899985 6644 555578899999854

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.86  E-value=3.9e-20  Score=176.48  Aligned_cols=264  Identities=13%  Similarity=0.051  Sum_probs=179.7

Q ss_pred             CCceeeccCC-CCCEEEEEec-CCeEEEEcCCCeEEEEeeccC-CceEEEEEeecCCCceEEEEEccC---CCcEEEEec
Q 036314           24 DDWVSAVDGS-NPGFILTGCY-DNLGRVWKAGGVCTHILEGHC-GAVSSVNIIKSDGLKYVTVATASK---DQTLRLWKF   97 (347)
Q Consensus        24 ~~~v~~~~~~-~~~~l~sg~~-d~~i~iw~~~~~~~~~l~~h~-~~V~~v~~~~~~~~~~~~l~s~s~---Dg~v~~wd~   97 (347)
                      ..+|.+++|+ +|++||+++. ||+++||++.+...+.+..|. ..|.+++|+|+     ..+++++.   +...++|.+
T Consensus        21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-----~~l~~~~~~~g~~~~~l~~~   95 (582)
T 3o4h_A           21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-----RVILVRDVSKGAEQHALFKV   95 (582)
T ss_dssp             HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS-----EEEEEEECSTTSCCEEEEEE
T ss_pred             ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC-----eEEEEeccCCCCcceEEEEE
Confidence            4579999988 6779998887 999999997654445566555 68999999873     35666654   566788776


Q ss_pred             cc--cccccCccccceeeeeeccccceEEEEEeCCCC--EEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCcccccc
Q 036314           98 DA--EELVNHPKKIRSFKILRGHKASVHSIAAETSGN--MVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQ  173 (347)
Q Consensus        98 ~~--~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~--~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (347)
                      +.  ...        .. .+..+ ..+...+|+|||+  .+++++.|+ +.+||+.++..                    
T Consensus        96 ~~~~~g~--------~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~-~~l~d~~~g~~--------------------  144 (582)
T 3o4h_A           96 NTSRPGE--------EQ-RLEAV-KPMRILSGVDTGEAVVFTGATEDR-VALYALDGGGL--------------------  144 (582)
T ss_dssp             ETTSTTC--------CE-ECTTS-CSBEEEEEEECSSCEEEEEECSSC-EEEEEEETTEE--------------------
T ss_pred             eccCCCc--------cc-cccCC-CCceeeeeCCCCCeEEEEecCCCC-ceEEEccCCcE--------------------
Confidence            53  110        01 12111 1233557788875  444555555 45999865321                    


Q ss_pred             ccccccccccCCccceEEEEe-CCCCeEEEEecC----CcEEEEECCCCceeeeeeeCeeeEEEEeeCCCCcEEEEecCC
Q 036314          174 LEGEAISTLVGHTQCVSSVVW-PQQETIYSASWD----HSVRTWDVEMGKDLSDIFCGKALNCIDIGGEGSALIAAGGSD  248 (347)
Q Consensus       174 ~~~~~~~~~~~h~~~v~~~~~-~~~~~l~s~s~d----g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~d  248 (347)
                            ..+..+..  .+++| |+++.|++++.|    +.|.+||+.+++..........+...+|+|++ +.|+++..+
T Consensus       145 ------~~l~~~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG-~~l~~~~~~  215 (582)
T 3o4h_A          145 ------RELARLPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGM-KVTAGLETA  215 (582)
T ss_dssp             ------EEEEEESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEEECCSSCEEEEEEECTTS-CEEEEEECS
T ss_pred             ------EEeecCCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceEeecCCCccccceECCCC-CEEEEccCC
Confidence                  11111222  45566 689999988877    78999999887754322233456888997765 566677778


Q ss_pred             C--cEEEEeCCCCCCCCCeEEecCCCCCeeEEE--------eCCCCCeEEEEEeCCCcEEEEEcCCCccceeecCCCCeE
Q 036314          249 P--ILRIWDPRKPGTSAPVFQFSSHNSWISACK--------WHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKV  318 (347)
Q Consensus       249 ~--~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~--------~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h~~~v  318 (347)
                      +  .|++||+....   .. .+.+|...+..+.        |+||+ .++++++.|++++||++  ++...   .+.+.|
T Consensus       216 ~~~~i~~~d~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~spdg-~~~~~~~~~g~~~l~~~--g~~~~---~~~~~v  285 (582)
T 3o4h_A          216 REARLVTVDPRDGS---VE-DLELPSKDFSSYRPTAITWLGYLPDG-RLAVVARREGRSAVFID--GERVE---APQGNH  285 (582)
T ss_dssp             SCEEEEEECTTTCC---EE-ECCCSCSHHHHHCCSEEEEEEECTTS-CEEEEEEETTEEEEEET--TEEEC---CCSSEE
T ss_pred             CeeEEEEEcCCCCc---EE-EccCCCcChhhhhhccccceeEcCCC-cEEEEEEcCCcEEEEEE--CCeec---cCCCce
Confidence            8  89999987432   23 6667777777777        99999 78999999999999999  55443   344678


Q ss_pred             EEEeecCCCEEEEccCCce---EEEee
Q 036314          319 LCADWWRGDSVISGGVDSK---LCVSS  342 (347)
Q Consensus       319 ~~~~~~~~~~l~s~s~D~~---v~vw~  342 (347)
                      .+++|++++.+++++.+.+   |.+|+
T Consensus       286 ~~~~~sdg~~l~~~s~~~~p~~l~~~d  312 (582)
T 3o4h_A          286 GRVVLWRGKLVTSHTSLSTPPRIVSLP  312 (582)
T ss_dssp             EEEEEETTEEEEEEEETTEEEEEEEET
T ss_pred             EEEEecCCEEEEEEcCCCCCCeEEEEc
Confidence            8999997767787777644   66655

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.85  E-value=5e-19  Score=156.60  Aligned_cols=267  Identities=9%  Similarity=0.111  Sum_probs=169.0

Q ss_pred             CcCCceeeccCC-CCCEEEEEecC-CeEEEEcCC---Ce--EEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEE
Q 036314           22 LHDDWVSAVDGS-NPGFILTGCYD-NLGRVWKAG---GV--CTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRL   94 (347)
Q Consensus        22 ~h~~~v~~~~~~-~~~~l~sg~~d-~~i~iw~~~---~~--~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~   94 (347)
                      .|...+..++++ ++++|++++.+ +.+++|++.   +.  .+..+..+. .+..++|+|++.   ..++++..++.|++
T Consensus        35 ~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~---~l~~~~~~~~~i~~  110 (343)
T 1ri6_A           35 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQGQ---FVFVGSYNAGNVSV  110 (343)
T ss_dssp             ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTTSS---EEEEEETTTTEEEE
T ss_pred             ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcCCCC---EEEEEecCCCeEEE
Confidence            466778888988 45678888887 899999864   33  233454444 788999998543   23445556899999


Q ss_pred             EeccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEee-CCCcEEEEecCC-CCCCCccceeeeccCCCccccc
Q 036314           95 WKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGS-WDCTISLWRTND-SDAAGNQVSIKKRKGNNQVEEP  172 (347)
Q Consensus        95 wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs-~Dg~I~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~  172 (347)
                      ||+..++      ..+....+..+ ..+.+++|+|+++++++++ .|+.|++||+.+ +...                  
T Consensus       111 ~d~~~~~------~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~------------------  165 (343)
T 1ri6_A          111 TRLEDGL------PVGVVDVVEGL-DGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLV------------------  165 (343)
T ss_dssp             EEEETTE------EEEEEEEECCC-TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEE------------------
T ss_pred             EECCCCc------cccccccccCC-CCceEEEECCCCCEEEEecCCCCEEEEEEecCCCcee------------------
Confidence            9984221      11223334333 4588899999999888776 899999999875 2110                  


Q ss_pred             cccccccc--ccc-CCccceEEEEe-CCCCeEEEE-ecCCcEEEEECCC--Cce--eeeee---eC----eeeEEEEeeC
Q 036314          173 QLEGEAIS--TLV-GHTQCVSSVVW-PQQETIYSA-SWDHSVRTWDVEM--GKD--LSDIF---CG----KALNCIDIGG  236 (347)
Q Consensus       173 ~~~~~~~~--~~~-~h~~~v~~~~~-~~~~~l~s~-s~dg~v~vwd~~~--~~~--~~~~~---~~----~~~~~~~~~~  236 (347)
                           ...  .+. .....+..++| |++++++.+ ..++.|.+||+..  +..  ...+.   ..    ..+..+++++
T Consensus       166 -----~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~  240 (343)
T 1ri6_A          166 -----AQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITP  240 (343)
T ss_dssp             -----EEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECT
T ss_pred             -----eecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECC
Confidence                 000  011 11234667777 567766554 4789999999953  332  11111   11    1345688887


Q ss_pred             CCCcEEEEecCCCcEEEEeCCCCC-CCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcC--CCc--cceee
Q 036314          237 EGSALIAAGGSDPILRIWDPRKPG-TSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLR--TAW--PLSVI  311 (347)
Q Consensus       237 ~~~~~la~~~~d~~i~iwd~~~~~-~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~--~~~--~~~~~  311 (347)
                      ++..+++++..++.|++||+.... ....+..+..+.. +..++|+|++.++++++..|+.|.+|+++  +++  .+..+
T Consensus       241 dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~  319 (343)
T 1ri6_A          241 DGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRY  319 (343)
T ss_dssp             TSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEE
T ss_pred             CCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEcccc
Confidence            766666677789999999987321 1223344444444 88999999997644444478999999554  543  23333


Q ss_pred             cCCCCeEEEEeec
Q 036314          312 DSHKDKVLCADWW  324 (347)
Q Consensus       312 ~~h~~~v~~~~~~  324 (347)
                      ... ....+++|.
T Consensus       320 ~~g-~~p~~i~~~  331 (343)
T 1ri6_A          320 AVG-QGPMWVVVN  331 (343)
T ss_dssp             ECS-SSCCEEEEE
T ss_pred             ccC-CCCeeEEEE
Confidence            332 344566664

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.84  E-value=1.2e-18  Score=154.74  Aligned_cols=272  Identities=13%  Similarity=0.039  Sum_probs=169.2

Q ss_pred             eccCCC-CCEEEEEecCCeEEEEcCC-CeEEEEeeccC-CceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccC
Q 036314           29 AVDGSN-PGFILTGCYDNLGRVWKAG-GVCTHILEGHC-GAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNH  105 (347)
Q Consensus        29 ~~~~~~-~~~l~sg~~d~~i~iw~~~-~~~~~~l~~h~-~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~  105 (347)
                      .+++++ +.++++++.+++|++||.. ++.++.+..+. ..+..++|+|++.   ..+++++.+++|.+||+.+++..  
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~---~~~v~~~~~~~i~~~d~~t~~~~--   78 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNR---TAYVLNNHYGDIYGIDLDTCKNT--   78 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSS---EEEEEETTTTEEEEEETTTTEEE--
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCC---EEEEEeCCCCcEEEEeCCCCcEE--
Confidence            345554 4589999999999999975 56666666443 2467899988543   24566778999999999876432  


Q ss_pred             ccccceeeeee-cc-----ccceEEEEEeCCCCEEEEeeCC------------CcEEEEecCCCCCCCccceeeeccCCC
Q 036314          106 PKKIRSFKILR-GH-----KASVHSIAAETSGNMVCSGSWD------------CTISLWRTNDSDAAGNQVSIKKRKGNN  167 (347)
Q Consensus       106 ~~~~~~~~~~~-~h-----~~~V~~v~~s~~~~~l~sgs~D------------g~I~iwd~~~~~~~~~~~~~~~~~~~~  167 (347)
                             ..+. ++     ...+..++|+|+|+++++++.+            +.|.+||+.++...             
T Consensus        79 -------~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-------------  138 (349)
T 1jmx_B           79 -------FHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEA-------------  138 (349)
T ss_dssp             -------EEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGB-------------
T ss_pred             -------EEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCcccc-------------
Confidence                   2222 12     2336789999999999988866            89999998653210             


Q ss_pred             ccccccccccccccccCCccceEEEEe-CCCCeEEEEecCCcEEEEECCCCceeeeeeeCe-------------------
Q 036314          168 QVEEPQLEGEAISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFCGK-------------------  227 (347)
Q Consensus       168 ~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~-------------------  227 (347)
                               ..+..+.. ...+.+++| ++++ ++.++  +.|.+||+++++.+..+....                   
T Consensus       139 ---------~~~~~~~~-~~~~~~~~~s~dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (349)
T 1jmx_B          139 ---------KPVRTFPM-PRQVYLMRAADDGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQS  205 (349)
T ss_dssp             ---------CCSEEEEC-CSSCCCEEECTTSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCC
T ss_pred             ---------ceeeeccC-CCcccceeECCCCc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCC
Confidence                     01111121 224566777 4666 66554  449999999887665543221                   


Q ss_pred             ------eeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCC-CCCeEEEEEeCCCcEEEE
Q 036314          228 ------ALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHN-KSWFHLISASYDGKVMLW  300 (347)
Q Consensus       228 ------~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~-~~~~~l~s~s~D~~i~lw  300 (347)
                            ....+.+.+++............+..+|....  ......+..+...+..+.|+| ++.. |+++  ++.|.+|
T Consensus       206 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~sp~dg~~-l~~~--~~~v~~~  280 (349)
T 1jmx_B          206 PRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTG--KTHTQEFADLTELYFTGLRSPKDPNQ-IYGV--LNRLAKY  280 (349)
T ss_dssp             TTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTC--CEEEEEEEECSSCEEEEEECSSCTTE-EEEE--ESEEEEE
T ss_pred             cceeEEeeeeeeecCCCcCCccccccceeEEEEeccCC--cEEecccccCCCcceeeEecCCCCCE-EEEE--cCeEEEE
Confidence                  12223332211100000000011112343321  111222333556788899999 8875 5555  8899999


Q ss_pred             EcCCCccceeecCCCCeEEEEeecC-CCEEEEccCCceEEEeecc
Q 036314          301 DLRTAWPLSVIDSHKDKVLCADWWR-GDSVISGGVDSKLCVSSGV  344 (347)
Q Consensus       301 d~~~~~~~~~~~~h~~~v~~~~~~~-~~~l~s~s~D~~v~vw~~~  344 (347)
                      |+++++.+..+.. ...+.+++|++ |++|++++.++.|.+|+..
T Consensus       281 d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~  324 (349)
T 1jmx_B          281 DLKQRKLIKAANL-DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPD  324 (349)
T ss_dssp             ETTTTEEEEEEEC-SSCCCEEEECSSSSCEEEESBSSEEEEEETT
T ss_pred             ECccCeEEEEEcC-CCCccceEECCCCCEEEEecCCCeEEEEecc
Confidence            9999887777653 33567899985 6677778889999999964

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.83  E-value=3e-19  Score=174.06  Aligned_cols=281  Identities=12%  Similarity=0.083  Sum_probs=175.7

Q ss_pred             eeccCCCCCEEEEEecCCeEEEEcCC-CeEE-EEeeccC-----------------CceEEEEEeecCCCceEEEEEccC
Q 036314           28 SAVDGSNPGFILTGCYDNLGRVWKAG-GVCT-HILEGHC-----------------GAVSSVNIIKSDGLKYVTVATASK   88 (347)
Q Consensus        28 ~~~~~~~~~~l~sg~~d~~i~iw~~~-~~~~-~~l~~h~-----------------~~V~~v~~~~~~~~~~~~l~s~s~   88 (347)
                      ..+.+. ++.+++++.|+ | +||.. |+.+ ..+..|.                 ..|.+++|+|+ +   ..+++  .
T Consensus        29 ~~~~w~-g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~---~~~~~--~   99 (706)
T 2z3z_A           29 VGLQWM-GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-G---LVVLF--T   99 (706)
T ss_dssp             TTCEEE-TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-T---EEEEE--E
T ss_pred             CCCcCc-CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-C---eEEEE--E
Confidence            334444 66777777788 8 99975 4442 4444443                 45899999985 3   23333  4


Q ss_pred             CCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCC-----CCCCCccceeeec
Q 036314           89 DQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTND-----SDAAGNQVSIKKR  163 (347)
Q Consensus        89 Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~-----~~~~~~~~~~~~~  163 (347)
                      |++|++||+.+++.          ..+..|...+.+++|+|||+.|+. +.|+.|++|++.+     +....    ....
T Consensus       100 ~~~i~~~d~~~~~~----------~~l~~~~~~~~~~~~SpdG~~la~-~~~~~i~v~~~~~~~~~~g~~~~----~~~~  164 (706)
T 2z3z_A          100 QGGLVGFDMLARKV----------TYLFDTNEETASLDFSPVGDRVAY-VRNHNLYIARGGKLGEGMSRAIA----VTID  164 (706)
T ss_dssp             TTEEEEEETTTTEE----------EEEECCTTCCTTCEECTTSSEEEE-EETTEEEEEECBCTTSCCCCCEE----SCSC
T ss_pred             CCEEEEEECCCCce----------EEccCCcccccCCcCCCCCCEEEE-EECCeEEEEecCcccccCCCcEE----eccC
Confidence            59999999976542          234456777888999999999988 4789999999876     32110    0000


Q ss_pred             cCCCccccccccccccccccCCccceEEEEe-CCCCeEEEEe---------------------------------cCCcE
Q 036314          164 KGNNQVEEPQLEGEAISTLVGHTQCVSSVVW-PQQETIYSAS---------------------------------WDHSV  209 (347)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~l~s~s---------------------------------~dg~v  209 (347)
                      .. ...    ..+..  ....+...+.++.| |+++.|++++                                 .+..|
T Consensus       165 ~~-~~~----~~g~~--~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l  237 (706)
T 2z3z_A          165 GT-ETL----VYGQA--VHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTV  237 (706)
T ss_dssp             CB-TTE----EESSC--CGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEE
T ss_pred             CC-CCe----Ecccc--hhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEE
Confidence            00 000    00000  01111223466777 5888888887                                 44679


Q ss_pred             EEEECCCCceeeeee---eCeeeEEEEeeCCCCcEEEEecCCC-----cEEEEeCCCCCCCCCeEEecCCCCC---eeEE
Q 036314          210 RTWDVEMGKDLSDIF---CGKALNCIDIGGEGSALIAAGGSDP-----ILRIWDPRKPGTSAPVFQFSSHNSW---ISAC  278 (347)
Q Consensus       210 ~vwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~la~~~~d~-----~i~iwd~~~~~~~~~~~~~~~h~~~---v~~v  278 (347)
                      .+||+.+++......   ....+..++|+|++ ..|++++.++     .|++||+........+.. ..+..+   +.++
T Consensus       238 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~-~~~~~~~~~~~~~  315 (706)
T 2z3z_A          238 GIYHLATGKTVYLQTGEPKEKFLTNLSWSPDE-NILYVAEVNRAQNECKVNAYDAETGRFVRTLFV-ETDKHYVEPLHPL  315 (706)
T ss_dssp             EEEETTTTEEEECCCCSCTTCEEEEEEECTTS-SEEEEEEECTTSCEEEEEEEETTTCCEEEEEEE-EECSSCCCCCSCC
T ss_pred             EEEECCCCceEeeccCCCCceeEeeEEEECCC-CEEEEEEeCCCCCeeEEEEEECCCCceeeEEEE-ccCCCeECccCCc
Confidence            999998876543221   22457789997765 4556655554     899999875311111111 223333   3678


Q ss_pred             EeCC--CCCeEEEEEeCCCcEEEEEcC-CCccceeecCCCCeEEE-EeecC-CCEEE-EccCCc----eEEEee
Q 036314          279 KWHN--KSWFHLISASYDGKVMLWDLR-TAWPLSVIDSHKDKVLC-ADWWR-GDSVI-SGGVDS----KLCVSS  342 (347)
Q Consensus       279 ~~s~--~~~~~l~s~s~D~~i~lwd~~-~~~~~~~~~~h~~~v~~-~~~~~-~~~l~-s~s~D~----~v~vw~  342 (347)
                      .|+|  ++. +|++++.|+.++||+++ ++..+..+..|...+.+ +.|++ |++|+ +++.++    .|..|+
T Consensus       316 ~~sp~~dg~-~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d  388 (706)
T 2z3z_A          316 TFLPGSNNQ-FIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCID  388 (706)
T ss_dssp             EECTTCSSE-EEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEE
T ss_pred             eeecCCCCE-EEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEE
Confidence            9999  885 68889999999999886 56667778888878876 78985 55654 445554    555554

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.83  E-value=8.7e-19  Score=171.18  Aligned_cols=292  Identities=8%  Similarity=-0.012  Sum_probs=167.2

Q ss_pred             ceeeccCC-CCCEEEEEecC---------CeEEEEcCCCeEEEEee---ccCCceEEEEEeecCCCceEEEEEccCCCcE
Q 036314           26 WVSAVDGS-NPGFILTGCYD---------NLGRVWKAGGVCTHILE---GHCGAVSSVNIIKSDGLKYVTVATASKDQTL   92 (347)
Q Consensus        26 ~v~~~~~~-~~~~l~sg~~d---------~~i~iw~~~~~~~~~l~---~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v   92 (347)
                      .|.+++++ ++++||+++.+         +.+++||..+...+.+.   +|...+..++|+|++.    .|+.++. ++|
T Consensus        62 ~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~----~la~~~~-~~i  136 (723)
T 1xfd_A           62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQ----QLIFIFE-NNI  136 (723)
T ss_dssp             TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTT----CEEEEET-TEE
T ss_pred             ccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccccccccEECCCCC----EEEEEEC-CeE
Confidence            48899998 56689998875         77889997643223443   4555588999999654    4777765 799


Q ss_pred             EEEeccccccccCccccceeeeeeccccc------------------eEEEEEeCCCCEEEEeeCCC-cEEEEecCCCCC
Q 036314           93 RLWKFDAEELVNHPKKIRSFKILRGHKAS------------------VHSIAAETSGNMVCSGSWDC-TISLWRTNDSDA  153 (347)
Q Consensus        93 ~~wd~~~~~~~~~~~~~~~~~~~~~h~~~------------------V~~v~~s~~~~~l~sgs~Dg-~I~iwd~~~~~~  153 (347)
                      ++||+.+++..         .....+...                  +.+++|+|||+.|+.++.|+ .+++|++.....
T Consensus       137 ~~~~~~~g~~~---------~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~  207 (723)
T 1xfd_A          137 YYCAHVGKQAI---------RVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTG  207 (723)
T ss_dssp             EEESSSSSCCE---------EEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSS
T ss_pred             EEEECCCCceE---------EEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCC
Confidence            99999876421         122222222                  37899999999999887653 445554432110


Q ss_pred             CCcc-c-eeeec-cCCC----ccccccc-cccccccccC------CccceEEEEe-CCCCeEEEEec----CCcEEEEEC
Q 036314          154 AGNQ-V-SIKKR-KGNN----QVEEPQL-EGEAISTLVG------HTQCVSSVVW-PQQETIYSASW----DHSVRTWDV  214 (347)
Q Consensus       154 ~~~~-~-~~~~~-~~~~----~~~~~~~-~~~~~~~~~~------h~~~v~~~~~-~~~~~l~s~s~----dg~v~vwd~  214 (347)
                      .... . ..... .+..    .+..... .++....+..      +...+..+.| |+++.|++.+.    +..|.+||+
T Consensus       208 ~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~  287 (723)
T 1xfd_A          208 SIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDA  287 (723)
T ss_dssp             SSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEET
T ss_pred             cCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeC
Confidence            0000 0 00000 0000    0000000 0111122222      3567888888 46666666543    357999999


Q ss_pred             CCCceeeeeeeC--eee----EEEEeeCCCCcEEEE-ecCCC------cEEEEeCCCCCCCCCeEEecCCCCCeeE-EEe
Q 036314          215 EMGKDLSDIFCG--KAL----NCIDIGGEGSALIAA-GGSDP------ILRIWDPRKPGTSAPVFQFSSHNSWISA-CKW  280 (347)
Q Consensus       215 ~~~~~~~~~~~~--~~~----~~~~~~~~~~~~la~-~~~d~------~i~iwd~~~~~~~~~~~~~~~h~~~v~~-v~~  280 (347)
                      .+++....+...  ..+    ..+.|+|++..++.. +..++      .|.+||+...+.......+..+...+.. ++|
T Consensus       288 ~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~  367 (723)
T 1xfd_A          288 TTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAY  367 (723)
T ss_dssp             TTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEE
T ss_pred             CCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEE
Confidence            988765443321  112    267888777666554 55666      5667773222220002233333333444 689


Q ss_pred             CCCCCeEEEEEeCC--CcEEEEEcCCCc--cceeecC---CCCeEEEEeecC-CCEEEE
Q 036314          281 HNKSWFHLISASYD--GKVMLWDLRTAW--PLSVIDS---HKDKVLCADWWR-GDSVIS  331 (347)
Q Consensus       281 s~~~~~~l~s~s~D--~~i~lwd~~~~~--~~~~~~~---h~~~v~~~~~~~-~~~l~s  331 (347)
                      +|++..+++++..+  +.++||+++...  ....+..   |...+..+.|+| |++|+.
T Consensus       368 spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~  426 (723)
T 1xfd_A          368 DEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLL  426 (723)
T ss_dssp             ETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEE
T ss_pred             cCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEE
Confidence            99998644455555  889999986432  3344443   677788999986 666553

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.83  E-value=2.1e-18  Score=153.51  Aligned_cols=253  Identities=10%  Similarity=0.083  Sum_probs=161.6

Q ss_pred             CcCCceeeccCCCCCEEEEEec---CCeEEEEcCC-Ce--EEEEeeccCCceEEEEEeecCCCceEEEEEcc-CCCcEEE
Q 036314           22 LHDDWVSAVDGSNPGFILTGCY---DNLGRVWKAG-GV--CTHILEGHCGAVSSVNIIKSDGLKYVTVATAS-KDQTLRL   94 (347)
Q Consensus        22 ~h~~~v~~~~~~~~~~l~sg~~---d~~i~iw~~~-~~--~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s-~Dg~v~~   94 (347)
                      .+...+..+++++++.|++++.   ++.|++|++. +.  .+..+..+...+..++|+|++.    .|++++ .+++|++
T Consensus        37 ~~~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~----~l~~~~~~~~~v~v  112 (347)
T 3hfq_A           37 AATQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQ----LVYSANYHKGTAEV  112 (347)
T ss_dssp             EECSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTT----EEEEEETTTTEEEE
T ss_pred             eccCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCC----EEEEEeCCCCEEEE
Confidence            3445667788885443555544   6899999974 33  3344556778889999999553    455555 7899999


Q ss_pred             Eeccc-cccccCccccceeeeeec---------cccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeecc
Q 036314           95 WKFDA-EELVNHPKKIRSFKILRG---------HKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRK  164 (347)
Q Consensus        95 wd~~~-~~~~~~~~~~~~~~~~~~---------h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~  164 (347)
                      |++.. ++.       +.+..+..         +...+.+++|+|+|+++++...++.|++|++....   ...      
T Consensus       113 ~~~~~~g~~-------~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g---~~~------  176 (347)
T 3hfq_A          113 MKIAADGAL-------TLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAG---QLS------  176 (347)
T ss_dssp             EEECTTSCE-------EEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTS---CEE------
T ss_pred             EEeCCCCCe-------eecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCC---cEE------
Confidence            99853 221       11222211         22358899999999977777788999999987211   000      


Q ss_pred             CCCccccccccccccccccC-CccceEEEEe-CCCCeEEE-EecCCcEEEEECCC--Ccee--eeeee---C----eeeE
Q 036314          165 GNNQVEEPQLEGEAISTLVG-HTQCVSSVVW-PQQETIYS-ASWDHSVRTWDVEM--GKDL--SDIFC---G----KALN  230 (347)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~-~~~~~l~s-~s~dg~v~vwd~~~--~~~~--~~~~~---~----~~~~  230 (347)
                                   ....+.. .......++| |++++++. ...++.+.+|++..  ++..  ..+..   .    ..+.
T Consensus       177 -------------~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  243 (347)
T 3hfq_A          177 -------------EQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAA  243 (347)
T ss_dssp             -------------EEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEE
T ss_pred             -------------EeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcce
Confidence                         0000111 1123456777 57776655 56778999999874  4321  11111   1    3467


Q ss_pred             EEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEc--CCCcc
Q 036314          231 CIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDL--RTAWP  307 (347)
Q Consensus       231 ~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~--~~~~~  307 (347)
                      .+++++++..++++...++.|.+||+...+....+..+..+...+..++|+|++.+++++...++.|.+|++  ++++.
T Consensus       244 ~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l  322 (347)
T 3hfq_A          244 AIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKL  322 (347)
T ss_dssp             EEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCE
T ss_pred             eEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeE
Confidence            788987766566777778999999986432233455666677778999999999764444445689999955  45543

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.82  E-value=2.9e-17  Score=146.99  Aligned_cols=283  Identities=8%  Similarity=0.048  Sum_probs=171.3

Q ss_pred             CEEEEEec----CCeEEEEcC---CCeEEEEeeccCCceEEEEEeecCCCceEEEEEccCC----CcEEEEecccccccc
Q 036314           36 GFILTGCY----DNLGRVWKA---GGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKD----QTLRLWKFDAEELVN  104 (347)
Q Consensus        36 ~~l~sg~~----d~~i~iw~~---~~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~D----g~v~~wd~~~~~~~~  104 (347)
                      .++..|++    ++.|.+|+.   .+........+...+..++|+|++    ..|++++.+    +.|++|+++..+   
T Consensus        14 ~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg----~~l~~~~~~~~~~~~v~~~~~~~~~---   86 (361)
T 3scy_A           14 LTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADG----KFVYSVNEFSKDQAAVSAFAFDKEK---   86 (361)
T ss_dssp             EEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTS----SEEEEEECCSSTTCEEEEEEEETTT---
T ss_pred             eEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCC----CEEEEEEccCCCCCcEEEEEEeCCC---
Confidence            35566644    568999964   244332222267777889999854    357777775    799999987521   


Q ss_pred             CccccceeeeeeccccceEEEEEeCCCCEEEEee-CCCcEEEEecCCCCCCCccceeeeccCCCcccccccccccccccc
Q 036314          105 HPKKIRSFKILRGHKASVHSIAAETSGNMVCSGS-WDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLV  183 (347)
Q Consensus       105 ~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs-~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (347)
                        ...+.+.....+......+++  +++++++++ .+++|.+|++................           +.......
T Consensus        87 --g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~-----------g~~~~~~~  151 (361)
T 3scy_A           87 --GTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFK-----------GSGPDKER  151 (361)
T ss_dssp             --TEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECC-----------CCCSCTTT
T ss_pred             --CcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEcc-----------CCCCCccc
Confidence              111233344445556677777  788777665 68899999986532211111000000           00000011


Q ss_pred             CCccceEEEEe-CCCCeEEEEe-cCCcEEEEECCCCce------e--------eeeeeCeeeEEEEeeCCCCcEEEEecC
Q 036314          184 GHTQCVSSVVW-PQQETIYSAS-WDHSVRTWDVEMGKD------L--------SDIFCGKALNCIDIGGEGSALIAAGGS  247 (347)
Q Consensus       184 ~h~~~v~~~~~-~~~~~l~s~s-~dg~v~vwd~~~~~~------~--------~~~~~~~~~~~~~~~~~~~~~la~~~~  247 (347)
                      .+...+.+++| |++++++.++ .++.|.+|++.....      +        ...........++|+|++..++++...
T Consensus       152 ~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~  231 (361)
T 3scy_A          152 QTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEI  231 (361)
T ss_dssp             CSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETT
T ss_pred             cCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCC
Confidence            12234567777 5777665554 478999998865431      1        112223456788998776555555557


Q ss_pred             CCcEEEEeCCCCCCCCCeEEe---cCCCCCeeEEEeCCCCCeEEEEEeC-CCcEEEEEcC--CCc--cceeecCCCCeEE
Q 036314          248 DPILRIWDPRKPGTSAPVFQF---SSHNSWISACKWHNKSWFHLISASY-DGKVMLWDLR--TAW--PLSVIDSHKDKVL  319 (347)
Q Consensus       248 d~~i~iwd~~~~~~~~~~~~~---~~h~~~v~~v~~s~~~~~~l~s~s~-D~~i~lwd~~--~~~--~~~~~~~h~~~v~  319 (347)
                      ++.|.+||+... .......+   ..+......++|+|++.+++++... +++|.+|+++  +++  .+..+.. ...+.
T Consensus       232 ~~~v~v~~~~~g-~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~  309 (361)
T 3scy_A          232 GGTVIAFRYADG-MLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPR  309 (361)
T ss_dssp             TCEEEEEEEETT-EEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCC
T ss_pred             CCeEEEEEecCC-ceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCc
Confidence            899999998632 21122222   3344557899999999864455555 6899999996  343  2333443 45678


Q ss_pred             EEeecC-CCEEEEcc-CCceEEEee
Q 036314          320 CADWWR-GDSVISGG-VDSKLCVSS  342 (347)
Q Consensus       320 ~~~~~~-~~~l~s~s-~D~~v~vw~  342 (347)
                      +++|+| |++|++++ .+++|.+|.
T Consensus       310 ~~~~spdg~~l~~~~~~~~~v~v~~  334 (361)
T 3scy_A          310 NFIITPNGKYLLVACRDTNVIQIFE  334 (361)
T ss_dssp             EEEECTTSCEEEEEETTTTEEEEEE
T ss_pred             eEEECCCCCEEEEEECCCCCEEEEE
Confidence            899985 66666666 689999975

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.82  E-value=6.4e-19  Score=172.17  Aligned_cols=281  Identities=12%  Similarity=0.064  Sum_probs=178.3

Q ss_pred             eccCCCCCEEEEEecCCeEEEEcCC-CeEEEEeeccCC---ceEEEEEeecCCCceEEEEEccC---------CCcEEEE
Q 036314           29 AVDGSNPGFILTGCYDNLGRVWKAG-GVCTHILEGHCG---AVSSVNIIKSDGLKYVTVATASK---------DQTLRLW   95 (347)
Q Consensus        29 ~~~~~~~~~l~sg~~d~~i~iw~~~-~~~~~~l~~h~~---~V~~v~~~~~~~~~~~~l~s~s~---------Dg~v~~w   95 (347)
                      .+++++++.++..+.|++|++||.. +.+...+.+|..   .+.+++|+|++    ..|+.++.         |++|++|
T Consensus        20 ~~~~s~dg~~~~~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg----~~la~~~~~~~~~~~s~~~~i~~~   95 (719)
T 1z68_A           20 FPNWISGQEYLHQSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDR----QFVYLESDYSKLWRYSYTATYYIY   95 (719)
T ss_dssp             CCEESSSSEEEEECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTS----SEEEEEEEEEECSSSCEEEEEEEE
T ss_pred             ccEECCCCeEEEEcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCC----CeEEEEecCceeEEeecceEEEEE
Confidence            4566654455555579999999975 566666666654   38999999954    36777766         7899999


Q ss_pred             eccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCcccccccc
Q 036314           96 KFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLE  175 (347)
Q Consensus        96 d~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (347)
                      |+.+++.+..       ..+   ...+..++|+|||+.|+.++ |+.|++|++.++....  .  ..            .
T Consensus        96 d~~~g~~~~~-------~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~--l--~~------------~  148 (719)
T 1z68_A           96 DLSNGEFVRG-------NEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQ--I--TF------------N  148 (719)
T ss_dssp             ETTTTEECCS-------SCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEE--C--CC------------C
T ss_pred             ECCCCccccc-------eec---CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEE--E--ec------------C
Confidence            9987753110       111   24578899999999999875 7899999987643210  0  00            0


Q ss_pred             ccccccccCCccce---------EEEEe-CCCCeEEEEecCC----------------------------------cEEE
Q 036314          176 GEAISTLVGHTQCV---------SSVVW-PQQETIYSASWDH----------------------------------SVRT  211 (347)
Q Consensus       176 ~~~~~~~~~h~~~v---------~~~~~-~~~~~l~s~s~dg----------------------------------~v~v  211 (347)
                      +.....+.+|...+         .++.| |+++.|++++.|.                                  .|++
T Consensus       149 ~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~  228 (719)
T 1z68_A          149 GRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFI  228 (719)
T ss_dssp             CBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEE
T ss_pred             CCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEE
Confidence            00000112232222         46777 6888998887663                                  7889


Q ss_pred             EECCCCcee--eeee-------eCeeeEEEEeeCCCCcEEEEecC--C--CcEEEEe----CCCCCCCCCeEE--ecCCC
Q 036314          212 WDVEMGKDL--SDIF-------CGKALNCIDIGGEGSALIAAGGS--D--PILRIWD----PRKPGTSAPVFQ--FSSHN  272 (347)
Q Consensus       212 wd~~~~~~~--~~~~-------~~~~~~~~~~~~~~~~~la~~~~--d--~~i~iwd----~~~~~~~~~~~~--~~~h~  272 (347)
                      ||+.+++..  ..+.       ....+..++|+|+ +.++++...  +  ..|.+||    +.... ...+..  ..+|.
T Consensus       229 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD-~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~-~~~~~~~~~~~~~  306 (719)
T 1z68_A          229 IDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTD-ERVCLQWLKRVQNVSVLSICDFREDWQTWD-CPKTQEHIEESRT  306 (719)
T ss_dssp             EESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSS-SEEEEEEEESSTTEEEEEEEEECSSSSSEE-CCGGGEEEEECSS
T ss_pred             EECCCCCccceeEccCCccCCCCcceEEEeEEeCC-CeEEEEEeccccCeEEEEEEcccCCCCCCc-eEEEEecccccCC
Confidence            999887642  1111       2335678899877 566665332  2  3488889    65322 211111  14677


Q ss_pred             CCee-----EEEeCCCCCeEEE-EEeCCC--cEEEEEcCCCccceeecCCCCeEEEEeecCCCEEEEccC-----CceEE
Q 036314          273 SWIS-----ACKWHNKSWFHLI-SASYDG--KVMLWDLRTAWPLSVIDSHKDKVLCADWWRGDSVISGGV-----DSKLC  339 (347)
Q Consensus       273 ~~v~-----~v~~s~~~~~~l~-s~s~D~--~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~-----D~~v~  339 (347)
                      .++.     .+.|+|++..+++ +...++  .|.+||+.+++ ...+..+...+..+.+++++.|+..+.     ++.++
T Consensus       307 ~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~~~v~~~~~~d~~~i~~~~~~~~~~~~~~~  385 (719)
T 1z68_A          307 GWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSGKWEAINIFRVTQDSLFYSSNEFEEYPGRRN  385 (719)
T ss_dssp             SCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSCSSSCEEEEEEECSSEEEEEESCGGGCTTCBE
T ss_pred             ceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEecccCceEEEEEEEEeCCEEEEEEecCCCCCceEE
Confidence            7777     8899999976444 344555  56667777665 556666666777766667776554444     47888


Q ss_pred             Eeec
Q 036314          340 VSSG  343 (347)
Q Consensus       340 vw~~  343 (347)
                      ||..
T Consensus       386 l~~~  389 (719)
T 1z68_A          386 IYRI  389 (719)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8863

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.82  E-value=2e-17  Score=148.05  Aligned_cols=279  Identities=11%  Similarity=0.081  Sum_probs=165.3

Q ss_pred             cCCceeeccCC-CCCEEEEEecC----CeEEEEcCC---CeE--EEEeeccCCceEEEEEeecCCCceEEEEEccCCCcE
Q 036314           23 HDDWVSAVDGS-NPGFILTGCYD----NLGRVWKAG---GVC--THILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTL   92 (347)
Q Consensus        23 h~~~v~~~~~~-~~~~l~sg~~d----~~i~iw~~~---~~~--~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v   92 (347)
                      +......++++ ++++|++++.+    +.+++|+..   +..  +..+..+......+++  ++.   ..+++...+++|
T Consensus        48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~---~l~~~~~~~~~v  122 (361)
T 3scy_A           48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGK---NIVTANYSGGSI  122 (361)
T ss_dssp             ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSS---EEEEEETTTTEE
T ss_pred             cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCC---EEEEEECCCCEE
Confidence            56667778888 45688888886    799999753   433  2334445556667776  222   344555578999


Q ss_pred             EEEeccccccccCccccceeeee--------eccccceEEEEEeCCCCEEEEe-eCCCcEEEEecCCCCCCC--ccceee
Q 036314           93 RLWKFDAEELVNHPKKIRSFKIL--------RGHKASVHSIAAETSGNMVCSG-SWDCTISLWRTNDSDAAG--NQVSIK  161 (347)
Q Consensus        93 ~~wd~~~~~~~~~~~~~~~~~~~--------~~h~~~V~~v~~s~~~~~l~sg-s~Dg~I~iwd~~~~~~~~--~~~~~~  161 (347)
                      .+|++.....+...   ......        +.+...+++++|+|+|++++.+ ..++.|++|++.......  ......
T Consensus       123 ~~~~~~~~g~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~  199 (361)
T 3scy_A          123 TVFPIGQDGALLPA---SDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTK  199 (361)
T ss_dssp             EEEEBCTTSCBCSC---SEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEE
T ss_pred             EEEEeCCCCcCccc---ceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeec
Confidence            99999754322111   000001        1123346889999999966554 458999999886432100  000000


Q ss_pred             eccCCCccccccccccccccccCCccceEEEEe-CCCCeEEEEe-cCCcEEEEECCCCcee--eeeee----CeeeEEEE
Q 036314          162 KRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW-PQQETIYSAS-WDHSVRTWDVEMGKDL--SDIFC----GKALNCID  233 (347)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~l~s~s-~dg~v~vwd~~~~~~~--~~~~~----~~~~~~~~  233 (347)
                                    +........+......++| |++++++.++ .++.|.+||+.++...  ..+..    ......++
T Consensus       200 --------------~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~  265 (361)
T 3scy_A          200 --------------GTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIH  265 (361)
T ss_dssp             --------------EEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEE
T ss_pred             --------------ccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEE
Confidence                          0000001112234567777 5777777666 6899999999866431  22211    12346888


Q ss_pred             eeCCCCcEEEEecC-CCcEEEEeCCCC-CCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcC--CCccce
Q 036314          234 IGGEGSALIAAGGS-DPILRIWDPRKP-GTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLR--TAWPLS  309 (347)
Q Consensus       234 ~~~~~~~~la~~~~-d~~i~iwd~~~~-~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~--~~~~~~  309 (347)
                      +++++..++++... ++.|.+|++... +....+..+.. ...+..++|+|++.+++++...++.|.+|+++  +++...
T Consensus       266 ~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~  344 (361)
T 3scy_A          266 LSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTD  344 (361)
T ss_dssp             ECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred             ECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEee
Confidence            98776555455555 689999998622 22223344444 55788999999997644444478999997554  555433


Q ss_pred             ee-cCCCCeEEEEeec
Q 036314          310 VI-DSHKDKVLCADWW  324 (347)
Q Consensus       310 ~~-~~h~~~v~~~~~~  324 (347)
                      .. ..+...+.|+.|.
T Consensus       345 ~~~~~~~~~p~~v~~~  360 (361)
T 3scy_A          345 IKKDIKVDKPVCLKFV  360 (361)
T ss_dssp             CSCCEECSSEEEEEEE
T ss_pred             cceeeeCCCCeEEEEc
Confidence            32 2345678899885

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.82  E-value=2.7e-19  Score=164.46  Aligned_cols=210  Identities=13%  Similarity=0.112  Sum_probs=142.7

Q ss_pred             ccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEe-CCC
Q 036314          119 KASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW-PQQ  197 (347)
Q Consensus       119 ~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~  197 (347)
                      ...++.+++++++.++++++.|+ +++|+..+.....      ......   ....... ......+...|.+++| +++
T Consensus        36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~------~~~~~~---~~~~~~~-~~~~~~~~~~v~~l~~spdg  104 (434)
T 2oit_A           36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQN------KPGDDP---NKIVDKV-QGLLVPMKFPIHHLALSCDN  104 (434)
T ss_dssp             CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCC------CTTCCT---TCEEECC-CCEEECCSSCEEEEEECTTS
T ss_pred             CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhc------ccccCc---ccccccC-ccccccCCCcccEEEEcCCC
Confidence            34577889999999999999998 9998754210000      000000   0000000 0011235567999999 577


Q ss_pred             CeEE----EEecCCcEEEEECCCC--------ceeeeee----eCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCC
Q 036314          198 ETIY----SASWDHSVRTWDVEMG--------KDLSDIF----CGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGT  261 (347)
Q Consensus       198 ~~l~----s~s~dg~v~vwd~~~~--------~~~~~~~----~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~  261 (347)
                      ++|+    +++.|++|++||++++        +.+..+.    +...+.+++|+|.++.++++++.|++|++||++..  
T Consensus       105 ~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~--  182 (434)
T 2oit_A          105 LTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTET--  182 (434)
T ss_dssp             CEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSS--
T ss_pred             CEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCC--
Confidence            8888    8899999999998654        2211221    24578999998876789999999999999999853  


Q ss_pred             CCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecCC-------CCeEEEEeecCCCE-EE-Ec
Q 036314          262 SAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSH-------KDKVLCADWWRGDS-VI-SG  332 (347)
Q Consensus       262 ~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h-------~~~v~~~~~~~~~~-l~-s~  332 (347)
                       .......+|...|.+++|+|++. +|++|+.||+|++||++ ++....+..|       ...|.++.|++... ++ .+
T Consensus       183 -~~~~~~~~~~~~v~~v~wspdg~-~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~  259 (434)
T 2oit_A          183 -VKVCATLPSTVAVTSVCWSPKGK-QLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYA  259 (434)
T ss_dssp             -EEEEEEECGGGCEEEEEECTTSS-CEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEE
T ss_pred             -cceeeccCCCCceeEEEEcCCCC-EEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEc
Confidence             22445567889999999999986 59999999999999998 5555544433       34899999986544 43 23


Q ss_pred             cCCc------eEEEeecc
Q 036314          333 GVDS------KLCVSSGV  344 (347)
Q Consensus       333 s~D~------~v~vw~~~  344 (347)
                      +.||      .+++|...
T Consensus       260 ~~dg~~~~~~~v~i~~l~  277 (434)
T 2oit_A          260 AADGTLETSPDVVMALLP  277 (434)
T ss_dssp             ETTCCSSSCCEEEEEECC
T ss_pred             cCCCccCCCCceEEEEec
Confidence            3343      37888753

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.80  E-value=2.4e-18  Score=164.03  Aligned_cols=233  Identities=12%  Similarity=0.044  Sum_probs=159.7

Q ss_pred             CCceEEEEEeecCCCceEEEEEccC-CCcEEEEeccccccccCccccceeeeeeccc-cceEEEEEeCCCCEEEEeeC--
Q 036314           64 CGAVSSVNIIKSDGLKYVTVATASK-DQTLRLWKFDAEELVNHPKKIRSFKILRGHK-ASVHSIAAETSGNMVCSGSW--  139 (347)
Q Consensus        64 ~~~V~~v~~~~~~~~~~~~l~s~s~-Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~-~~V~~v~~s~~~~~l~sgs~--  139 (347)
                      ..+|.+++|+|++.    .||.++. ||+++||++++++.          ..+..|. ..+.+++|+|| +++++++.  
T Consensus        21 ~~~~~~~~~~~DG~----~la~~s~~~g~~~lw~~~~g~~----------~~lt~~~~~~~~~~~~spd-~~l~~~~~~~   85 (582)
T 3o4h_A           21 AVEKYSLQGVVDGD----KLLVVGFSEGSVNAYLYDGGET----------VKLNREPINSVLDPHYGVG-RVILVRDVSK   85 (582)
T ss_dssp             HSCEEEEEEEETTT----EEEEEEEETTEEEEEEEETTEE----------EECCSSCCSEECEECTTCS-EEEEEEECST
T ss_pred             ccchheeecCCCCC----eEEEEEccCCceeEEEEcCCCc----------EeeecccccccccccCCCC-eEEEEeccCC
Confidence            45799999999553    6887777 99999999865432          2344454 68999999999 78887775  


Q ss_pred             -CCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEeCCCC-eEEEEecCCcEEEEECCCC
Q 036314          140 -DCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWPQQE-TIYSASWDHSVRTWDVEMG  217 (347)
Q Consensus       140 -Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~s~dg~v~vwd~~~~  217 (347)
                       +...++|.+.......                    ...+....++.  +.++. ++++ .+++.+.++.+.+||+.++
T Consensus        86 g~~~~~l~~~~~~~~g~--------------------~~~l~~~~~~~--~~~~s-~dg~~~~~~s~~~~~~~l~d~~~g  142 (582)
T 3o4h_A           86 GAEQHALFKVNTSRPGE--------------------EQRLEAVKPMR--ILSGV-DTGEAVVFTGATEDRVALYALDGG  142 (582)
T ss_dssp             TSCCEEEEEEETTSTTC--------------------CEECTTSCSBE--EEEEE-ECSSCEEEEEECSSCEEEEEEETT
T ss_pred             CCcceEEEEEeccCCCc--------------------cccccCCCCce--eeeeC-CCCCeEEEEecCCCCceEEEccCC
Confidence             5667787654310000                    00111112222  33333 3443 3444444555669999887


Q ss_pred             ceeeeeeeCeeeEEEEeeCCCCcEEEEecCC----CcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeC
Q 036314          218 KDLSDIFCGKALNCIDIGGEGSALIAAGGSD----PILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASY  293 (347)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~la~~~~d----~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~  293 (347)
                      +.........  ..+.++|++ +.+++++.+    ..|++||+....    ...+..|...+..++|+|||.. |+++..
T Consensus       143 ~~~~l~~~~~--~~~~~spDG-~~la~~~~~~~~~~~i~~~d~~~g~----~~~l~~~~~~~~~~~~SpDG~~-l~~~~~  214 (582)
T 3o4h_A          143 GLRELARLPG--FGFVSDIRG-DLIAGLGFFGGGRVSLFTSNLSSGG----LRVFDSGEGSFSSASISPGMKV-TAGLET  214 (582)
T ss_dssp             EEEEEEEESS--CEEEEEEET-TEEEEEEEEETTEEEEEEEETTTCC----CEEECCSSCEEEEEEECTTSCE-EEEEEC
T ss_pred             cEEEeecCCC--ceEEECCCC-CEEEEEEEcCCCCeEEEEEcCCCCC----ceEeecCCCccccceECCCCCE-EEEccC
Confidence            6543332222  677787654 566766655    789999986432    3467788888999999999965 778888


Q ss_pred             CC--cEEEEEcCCCccceeecCCCCeEEEEe--------ecC-CCEEEEccCCceEEEeec
Q 036314          294 DG--KVMLWDLRTAWPLSVIDSHKDKVLCAD--------WWR-GDSVISGGVDSKLCVSSG  343 (347)
Q Consensus       294 D~--~i~lwd~~~~~~~~~~~~h~~~v~~~~--------~~~-~~~l~s~s~D~~v~vw~~  343 (347)
                      ++  .|++||+++++.. .+.+|...+..+.        |+| |..+++++.|++++||..
T Consensus       215 ~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~  274 (582)
T 3o4h_A          215 AREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID  274 (582)
T ss_dssp             SSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred             CCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence            88  8999999988766 7778887777777        985 667889999999999973

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.78  E-value=1.3e-16  Score=141.78  Aligned_cols=236  Identities=11%  Similarity=0.075  Sum_probs=161.9

Q ss_pred             CCceEEEEEeecCCCceEEEEEccC-------CCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEE-E
Q 036314           64 CGAVSSVNIIKSDGLKYVTVATASK-------DQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMV-C  135 (347)
Q Consensus        64 ~~~V~~v~~~~~~~~~~~~l~s~s~-------Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l-~  135 (347)
                      ...+..++|+++++    .|+.++.       +++|.+||..+++.         ...+.. ...+..++|+++|+.+ +
T Consensus        40 ~~~~~~~~~s~dg~----~l~~~~~~~~~~~~~~~v~~~d~~~~~~---------~~~~~~-~~~~~~~~~s~dg~~l~v  105 (353)
T 3vgz_A           40 GKGAYEMAYSQQEN----ALWLATSQSRKLDKGGVVYRLDPVTLEV---------TQAIHN-DLKPFGATINNTTQTLWF  105 (353)
T ss_dssp             ESSEEEEEEETTTT----EEEEEECCCTTTEESEEEEEECTTTCCE---------EEEEEE-SSCCCSEEEETTTTEEEE
T ss_pred             ccCccceEECCCCC----EEEEEcCCCcCCCCCccEEEEcCCCCeE---------EEEEec-CCCcceEEECCCCCEEEE
Confidence            34578899998553    3444442       67899999877643         223332 3346788999999854 5


Q ss_pred             EeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCC---------ccceEEEEe-CCCCeEEEEe-
Q 036314          136 SGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGH---------TQCVSSVVW-PQQETIYSAS-  204 (347)
Q Consensus       136 sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h---------~~~v~~~~~-~~~~~l~s~s-  204 (347)
                      +...++.|.+||..++...                         ..+..+         .....+++| ++++.++.++ 
T Consensus       106 ~~~~~~~v~~~d~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~  160 (353)
T 3vgz_A          106 GNTVNSAVTAIDAKTGEVK-------------------------GRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGI  160 (353)
T ss_dssp             EETTTTEEEEEETTTCCEE-------------------------EEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEE
T ss_pred             EecCCCEEEEEeCCCCeeE-------------------------EEEecCCCccccccCCCCCceEEECCCCCEEEEEec
Confidence            6666899999998764321                         111111         112466776 6777776665 


Q ss_pred             -cCCcEEEEECCCCceeeeee-eCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEec----CCCCCeeEE
Q 036314          205 -WDHSVRTWDVEMGKDLSDIF-CGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFS----SHNSWISAC  278 (347)
Q Consensus       205 -~dg~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~----~h~~~v~~v  278 (347)
                       .++.|.+||+++++.+..+. ....+..+.+++++. .++++..++.|.+||+....   ....+.    ++...+..+
T Consensus       161 ~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~-~l~~~~~~~~i~~~d~~~~~---~~~~~~~~~~~~~~~~~~~  236 (353)
T 3vgz_A          161 GKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGK-RLYTTNADGELITIDTADNK---ILSRKKLLDDGKEHFFINI  236 (353)
T ss_dssp             SSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTT-EEEEECTTSEEEEEETTTTE---EEEEEECCCSSSCCCEEEE
T ss_pred             CCCceEEEEcCCCCceEEEecCCCCccceEEECCCCC-EEEEEcCCCeEEEEECCCCe---EEEEEEcCCCCCCcccceE
Confidence             47889999999988777665 344467788877655 55666779999999987532   233333    245567889


Q ss_pred             EeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecCCCCeEEEEeecC-CCE-EEEccCCceEEEeecc
Q 036314          279 KWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKVLCADWWR-GDS-VISGGVDSKLCVSSGV  344 (347)
Q Consensus       279 ~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~-l~s~s~D~~v~vw~~~  344 (347)
                      +|+|++.+++++...++.|.+||+++++.+..+..+.  ..++.|++ |++ +++...+++|.+|+..
T Consensus       237 ~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~  302 (353)
T 3vgz_A          237 SLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE--SLAVLFNPARNEAYVTHRQAGKVSVIDAK  302 (353)
T ss_dssp             EEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS--CCCEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             EECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC--CceEEECCCCCEEEEEECCCCeEEEEECC
Confidence            9999998766666667999999999988777765433  25688875 664 5666679999999864

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.77  E-value=1.8e-16  Score=142.29  Aligned_cols=272  Identities=9%  Similarity=0.036  Sum_probs=163.0

Q ss_pred             EEEEEecC--CeEEEEcC---CCeEEEE--ee-ccCCceEEEEEeecCCCceEEEEEccCCCcEEEEecc-ccccccCcc
Q 036314           37 FILTGCYD--NLGRVWKA---GGVCTHI--LE-GHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFD-AEELVNHPK  107 (347)
Q Consensus        37 ~l~sg~~d--~~i~iw~~---~~~~~~~--l~-~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~-~~~~~~~~~  107 (347)
                      +|+.|++.  +.|.+|+.   .+.....  .. +....+..++|+|++    .+|++++.+ +|++|++. ++++.    
T Consensus         4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg----~~l~~~~~~-~v~~~~~~~~g~~~----   74 (365)
T 1jof_A            4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHER----KNIYGAAMK-KWSSFAVKSPTEIV----   74 (365)
T ss_dssp             EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTS----SEEEEEEBT-EEEEEEEEETTEEE----
T ss_pred             EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCC----CEEEEEccc-eEEEEEECCCCCEE----
Confidence            45556653  45777653   3443221  11 233467889999854    357788887 99999986 54321    


Q ss_pred             ccceeeeeeccccceEEEEEeCCCCE--EEEee-------------CCCcEEEEecCC-CCCCCccceeeeccCCCcccc
Q 036314          108 KIRSFKILRGHKASVHSIAAETSGNM--VCSGS-------------WDCTISLWRTND-SDAAGNQVSIKKRKGNNQVEE  171 (347)
Q Consensus       108 ~~~~~~~~~~h~~~V~~v~~s~~~~~--l~sgs-------------~Dg~I~iwd~~~-~~~~~~~~~~~~~~~~~~~~~  171 (347)
                         .......+ +.+..++|+|||++  +++++             .++++++|++.. +...                 
T Consensus        75 ---~~~~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~-----------------  133 (365)
T 1jof_A           75 ---HEASHPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLE-----------------  133 (365)
T ss_dssp             ---EEEEEECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEE-----------------
T ss_pred             ---EeeEeecC-CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCc-----------------
Confidence               11111111 22445889999994  55654             799999999863 2110                 


Q ss_pred             cccccccccccc-CCccceEEEEe-CCCCeEEEEec-CCcEEEEECC-CCcee--eeee--e-CeeeEEEEeeCCCCcEE
Q 036314          172 PQLEGEAISTLV-GHTQCVSSVVW-PQQETIYSASW-DHSVRTWDVE-MGKDL--SDIF--C-GKALNCIDIGGEGSALI  242 (347)
Q Consensus       172 ~~~~~~~~~~~~-~h~~~v~~~~~-~~~~~l~s~s~-dg~v~vwd~~-~~~~~--~~~~--~-~~~~~~~~~~~~~~~~l  242 (347)
                           ..+..+. .+...+.+++| |++++|+++.. ++.|++||+. +++..  ..+.  . +..+..++++|++..++
T Consensus       134 -----~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~  208 (365)
T 1jof_A          134 -----KNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLY  208 (365)
T ss_dssp             -----EEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEE
T ss_pred             -----ceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEE
Confidence                 0001110 13345778887 57777776653 6799999998 66542  2222  1 34577889987765454


Q ss_pred             EEecCCCcEEEEeCCCC-CCCCC----eEEec----CCCC------CeeEEE-eCCCCCeEEEEEeCCC-----cEEEEE
Q 036314          243 AAGGSDPILRIWDPRKP-GTSAP----VFQFS----SHNS------WISACK-WHNKSWFHLISASYDG-----KVMLWD  301 (347)
Q Consensus       243 a~~~~d~~i~iwd~~~~-~~~~~----~~~~~----~h~~------~v~~v~-~s~~~~~~l~s~s~D~-----~i~lwd  301 (347)
                      ++...++.|.+|++... +....    +..+.    +|..      .+..++ |+|++.+++++...+.     +|.+|+
T Consensus       209 v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~  288 (365)
T 1jof_A          209 ALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFK  288 (365)
T ss_dssp             EEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEE
T ss_pred             EEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEE
Confidence            55555789999986531 11100    11121    2222      578899 9999976443333333     899999


Q ss_pred             cC-CCccce---eecCCCCeEEEEeecC----CCEEEEccC-CceEEEeec
Q 036314          302 LR-TAWPLS---VIDSHKDKVLCADWWR----GDSVISGGV-DSKLCVSSG  343 (347)
Q Consensus       302 ~~-~~~~~~---~~~~h~~~v~~~~~~~----~~~l~s~s~-D~~v~vw~~  343 (347)
                      ++ +++...   ....+...+..++|+|    |++|++++. +++|.||+.
T Consensus       289 ~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~  339 (365)
T 1jof_A          289 LRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRW  339 (365)
T ss_dssp             ECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEE
T ss_pred             ECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEE
Confidence            96 454332   1333444566788876    788888876 489999974

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.75  E-value=1.6e-16  Score=143.25  Aligned_cols=272  Identities=10%  Similarity=0.027  Sum_probs=167.0

Q ss_pred             ccCC-CCCEEEEEec-CCe--EEEEcCC-CeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEecccccccc
Q 036314           30 VDGS-NPGFILTGCY-DNL--GRVWKAG-GVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVN  104 (347)
Q Consensus        30 ~~~~-~~~~l~sg~~-d~~--i~iw~~~-~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~  104 (347)
                      .+++ ++++|+.++. ++.  +.+||+. +.......+|...+..+.|+|++    ..|+.++.++.|++||+.+++.  
T Consensus        41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg----~~l~~~~~~~~l~~~d~~~g~~--  114 (388)
T 3pe7_A           41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDD----DALFYVKDGRNLMRVDLATLEE--  114 (388)
T ss_dssp             CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTS----SEEEEEETTTEEEEEETTTCCE--
T ss_pred             ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCC----CEEEEEeCCCeEEEEECCCCcc--
Confidence            7788 4668888887 674  7777875 45555566676666577899854    3688888899999999987642  


Q ss_pred             CccccceeeeeeccccceEEE--EEeCCCCEEEE----------------------eeCCCcEEEEecCCCCCCCcccee
Q 036314          105 HPKKIRSFKILRGHKASVHSI--AAETSGNMVCS----------------------GSWDCTISLWRTNDSDAAGNQVSI  160 (347)
Q Consensus       105 ~~~~~~~~~~~~~h~~~V~~v--~~s~~~~~l~s----------------------gs~Dg~I~iwd~~~~~~~~~~~~~  160 (347)
                             ...+..+...+...  .+++++++++.                      .+.+..|.+||+.++.        
T Consensus       115 -------~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~--------  179 (388)
T 3pe7_A          115 -------NVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGE--------  179 (388)
T ss_dssp             -------EEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCC--------
T ss_pred             -------eeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCc--------
Confidence                   12233444444333  34899988874                      2345678888876532        


Q ss_pred             eeccCCCccccccccccccccccCCccceEEEEe-C-CCCeEEEEecC------CcEEEEECCCCceeeeeeeC---eee
Q 036314          161 KKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW-P-QQETIYSASWD------HSVRTWDVEMGKDLSDIFCG---KAL  229 (347)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~-~~~~l~s~s~d------g~v~vwd~~~~~~~~~~~~~---~~~  229 (347)
                                        ...+..+...+..+.| | +++.|+.++.+      ..|.++|+..+.. ..+...   ..+
T Consensus       180 ------------------~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~  240 (388)
T 3pe7_A          180 ------------------STVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHAEGESC  240 (388)
T ss_dssp             ------------------EEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCCTTEEE
T ss_pred             ------------------eEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCCCCccc
Confidence                              1122234445677777 6 67777776653      3677788765433 333222   245


Q ss_pred             EEEEeeCCCCcEEEEecCCC----cEEEEeCCCCCCCCCeEEecCCCCC---eeEEEeCCCCCeEEEEE--------eCC
Q 036314          230 NCIDIGGEGSALIAAGGSDP----ILRIWDPRKPGTSAPVFQFSSHNSW---ISACKWHNKSWFHLISA--------SYD  294 (347)
Q Consensus       230 ~~~~~~~~~~~~la~~~~d~----~i~iwd~~~~~~~~~~~~~~~h~~~---v~~v~~s~~~~~~l~s~--------s~D  294 (347)
                      ....|+|++..++..+..++    .|++||+.... ...+..+.++...   .....|+|++..++++.        ..+
T Consensus       241 ~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~-~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~  319 (388)
T 3pe7_A          241 THEFWVPDGSALVYVSYLKGSPDRFIYSADPETLE-NRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIEND  319 (388)
T ss_dssp             EEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCC-EEEEEEECCEEEEEECTTSSEEEEEECCC------------CCC
T ss_pred             ccceECCCCCEEEEEecCCCCCcceEEEEecCCCc-eEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCC
Confidence            66788877665544433222    39999987532 2223333331111   12236899987644333        456


Q ss_pred             CcEEEEEcCCCccceeecCCCC-----------eEEEEeecC-CCEEEEcc-CCceEEEeec
Q 036314          295 GKVMLWDLRTAWPLSVIDSHKD-----------KVLCADWWR-GDSVISGG-VDSKLCVSSG  343 (347)
Q Consensus       295 ~~i~lwd~~~~~~~~~~~~h~~-----------~v~~~~~~~-~~~l~s~s-~D~~v~vw~~  343 (347)
                      ..|.+||+.+++ +..+..|..           .+.++.|+| |++|+..+ .++...||..
T Consensus       320 ~~i~~~d~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~  380 (388)
T 3pe7_A          320 PFLYVFNMKNGT-QHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLA  380 (388)
T ss_dssp             CEEEEEETTTTE-EEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred             CEEEEEeccCCc-eEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEE
Confidence            789999998865 455555655           577889985 66666444 5787777753

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.75  E-value=3.7e-16  Score=151.12  Aligned_cols=281  Identities=14%  Similarity=0.069  Sum_probs=177.9

Q ss_pred             CCCcCCceeeccCCCCC-EEEEE--ecCCeEEEEc-CCCeEEEEeeccCCceE---------EEEEe--ecCCCceEE-E
Q 036314           20 PSLHDDWVSAVDGSNPG-FILTG--CYDNLGRVWK-AGGVCTHILEGHCGAVS---------SVNII--KSDGLKYVT-V   83 (347)
Q Consensus        20 ~~~h~~~v~~~~~~~~~-~l~sg--~~d~~i~iw~-~~~~~~~~l~~h~~~V~---------~v~~~--~~~~~~~~~-l   83 (347)
                      ..+|...+..++++++. ++++.  +.+++.+||. ..+...+.+..|...+.         ...|+  |++.    . |
T Consensus        19 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~----~~l   94 (662)
T 3azo_A           19 VASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGG----PLL   94 (662)
T ss_dssp             HHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSS----CEE
T ss_pred             HhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCC----eEE
Confidence            44688999999988554 55555  5588999998 34444566777776666         56666  6432    3 3


Q ss_pred             E-EccCCCcEEEEecc--c-cccccCccccceeeeeec-----cccceEEEEEeCCCCEEEEeeCC----------CcEE
Q 036314           84 A-TASKDQTLRLWKFD--A-EELVNHPKKIRSFKILRG-----HKASVHSIAAETSGNMVCSGSWD----------CTIS  144 (347)
Q Consensus        84 ~-s~s~Dg~v~~wd~~--~-~~~~~~~~~~~~~~~~~~-----h~~~V~~v~~s~~~~~l~sgs~D----------g~I~  144 (347)
                      + +...+..|.+|++.  . ++          ...+..     |...+.+++|+|||+.|+.++.|          .+|+
T Consensus        95 a~~~~~~~~l~~~~~~~~g~~~----------~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~  164 (662)
T 3azo_A           95 VFTHFGDQRLYAFEPDAPGGAV----------PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLA  164 (662)
T ss_dssp             EEEBTTTCCEEEECTTSTTCCC----------CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEE
T ss_pred             EEEECCCCeEEEEcCCCCCCCC----------CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEE
Confidence            4 33335666666654  2 32          122333     66778899999999999988887          5899


Q ss_pred             EEecCCCCCCCccceeeeccCCCcccccccccccccccc-CCccceEEEEe-CCCCeEEEEecCC--------cEEEEEC
Q 036314          145 LWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLV-GHTQCVSSVVW-PQQETIYSASWDH--------SVRTWDV  214 (347)
Q Consensus       145 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~-~~~~~l~s~s~dg--------~v~vwd~  214 (347)
                      +||+.+.....                    ......+. .+...+..+.| |++++|+.++.++        .|.+||+
T Consensus       165 ~~~~~~~~~~~--------------------~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~  224 (662)
T 3azo_A          165 AVPLDGSAAAD--------------------RSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARV  224 (662)
T ss_dssp             EEETTSTTTTC--------------------GGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEE
T ss_pred             EEECCCCcccc--------------------CCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEE
Confidence            99886510000                    00011222 33345556666 6888888877653        7999999


Q ss_pred             C-CCc--eeeeeee--CeeeEEEEeeCCCCcEEEEecCCC--cEEEEeCCCCCCCCCeEEecCC-CCC--------eeEE
Q 036314          215 E-MGK--DLSDIFC--GKALNCIDIGGEGSALIAAGGSDP--ILRIWDPRKPGTSAPVFQFSSH-NSW--------ISAC  278 (347)
Q Consensus       215 ~-~~~--~~~~~~~--~~~~~~~~~~~~~~~~la~~~~d~--~i~iwd~~~~~~~~~~~~~~~h-~~~--------v~~v  278 (347)
                      . ++.  ....+..  ...+..+.|++++. +++++..++  .|.+||+... .   ...+..+ ...        +..+
T Consensus       225 ~~~g~~~~~~~l~~~~~~~~~~~~~spdg~-l~~~~~~~~~~~l~~~~~~~~-~---~~~l~~~~~~~~~p~w~~~~~~~  299 (662)
T 3azo_A          225 TEDGRFADTRTLLGGPEEAIAQAEWAPDGS-LIVATDRTGWWNLHRVDPATG-A---ATQLCRREEEFAGPLWTPGMRWF  299 (662)
T ss_dssp             CTTSCEEEEEEEEEETTBCEEEEEECTTSC-EEEEECTTSSCEEEEECTTTC-C---EEESSCCSSBSSCCCCSTTCCSE
T ss_pred             CCCCcccccEEeCCCCCceEcceEECCCCe-EEEEECCCCCeEEEEEECCCC-c---eeecccccccccCccccccCceE
Confidence            8 461  3333332  34567888877765 777887788  5666665322 1   2222222 221        4678


Q ss_pred             EeCCCCCeEEEEEeCCCcEEEE--EcCCCccceeecCCCCeEEEE-eecCCCE-EEEccCCceEEEee
Q 036314          279 KWHNKSWFHLISASYDGKVMLW--DLRTAWPLSVIDSHKDKVLCA-DWWRGDS-VISGGVDSKLCVSS  342 (347)
Q Consensus       279 ~~s~~~~~~l~s~s~D~~i~lw--d~~~~~~~~~~~~h~~~v~~~-~~~~~~~-l~s~s~D~~v~vw~  342 (347)
                      +|+|++. ++++++. +.++||  |+.+++ +..+..|.+.+..+ ++..+.. +++++.+....||.
T Consensus       300 ~~~~~~~-~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~  364 (662)
T 3azo_A          300 APLANGL-IAVVHGK-GAAVLGILDPESGE-LVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVE  364 (662)
T ss_dssp             EECTTSC-EEEEEBS-SSCEEEEEETTTTE-EEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEE
T ss_pred             eEeCCCE-EEEEEEc-CccEEEEEECCCCc-EEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEE
Confidence            8888875 6888888 999999  555554 67778888888877 5544433 55666676656654

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.73  E-value=1.2e-16  Score=156.14  Aligned_cols=287  Identities=9%  Similarity=-0.028  Sum_probs=168.3

Q ss_pred             eeeccCC-CCCEEEEEec---------CCeEEEEcCCCeEE---EEeeccCCceEEEEEeecCCCceEEEEEccCCCcEE
Q 036314           27 VSAVDGS-NPGFILTGCY---------DNLGRVWKAGGVCT---HILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLR   93 (347)
Q Consensus        27 v~~~~~~-~~~~l~sg~~---------d~~i~iw~~~~~~~---~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~   93 (347)
                      +.++++| ++++||+++.         |+++++||..+...   ..+   ...+..++|+|++.    .|+.++ |++|+
T Consensus        62 ~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l---~~~~~~~~~SPDG~----~la~~~-~~~i~  133 (719)
T 1z68_A           62 ASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL---PRPIQYLCWSPVGS----KLAYVY-QNNIY  133 (719)
T ss_dssp             CSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC---CSSBCCEEECSSTT----CEEEEE-TTEEE
T ss_pred             eeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceec---CcccccceECCCCC----EEEEEE-CCeEE
Confidence            8888988 5678888876         78999999864333   233   24588899999654    466664 78999


Q ss_pred             EEeccccccccCccccceeeeeeccccce---------EEEEEeCCCCEEEEeeCC-C----------------------
Q 036314           94 LWKFDAEELVNHPKKIRSFKILRGHKASV---------HSIAAETSGNMVCSGSWD-C----------------------  141 (347)
Q Consensus        94 ~wd~~~~~~~~~~~~~~~~~~~~~h~~~V---------~~v~~s~~~~~l~sgs~D-g----------------------  141 (347)
                      +|++.+++.............+.||...|         .+++|+|||+.|++++.| +                      
T Consensus       134 ~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~  213 (719)
T 1z68_A          134 LKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIP  213 (719)
T ss_dssp             EESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEE
T ss_pred             EEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeec
Confidence            99998765321100000001222333222         479999999999988866 2                      


Q ss_pred             -----------cEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEeC-CCCeEEEEecCC--
Q 036314          142 -----------TISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWP-QQETIYSASWDH--  207 (347)
Q Consensus       142 -----------~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~l~s~s~dg--  207 (347)
                                 +|++||+.++....                 ...-.....+.+|...+..++|+ +++.+++....+  
T Consensus       214 yp~~g~~~~~~~l~~~d~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~  276 (719)
T 1z68_A          214 YPKAGAKNPVVRIFIIDTTYPAYVG-----------------PQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQN  276 (719)
T ss_dssp             CCBTTSCCCEEEEEEEESSCHHHHC-----------------CEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTT
T ss_pred             CCCCCCCCCeeEEEEEECCCCCccc-----------------eeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccC
Confidence                       44455543311000                 00000002345688889999995 544445533222  


Q ss_pred             --cEEEEE----CCCCceeeeee----e-CeeeE-----EEEeeCCCCcEEE-EecCCC--cEEEEeCCCCCCCCCeEEe
Q 036314          208 --SVRTWD----VEMGKDLSDIF----C-GKALN-----CIDIGGEGSALIA-AGGSDP--ILRIWDPRKPGTSAPVFQF  268 (347)
Q Consensus       208 --~v~vwd----~~~~~~~~~~~----~-~~~~~-----~~~~~~~~~~~la-~~~~d~--~i~iwd~~~~~~~~~~~~~  268 (347)
                        .|.+||    +.+++....+.    . ...+.     .+.|++++..++. +...++  .|.+||+....    ...+
T Consensus       277 ~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~----~~~l  352 (719)
T 1z68_A          277 VSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN----AIQI  352 (719)
T ss_dssp             EEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT----CEEC
T ss_pred             eEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc----eEec
Confidence              388899    77766544331    1 12233     5678777665544 344555  56666765321    3455


Q ss_pred             cCCCCCeeEEEeCCCCCeEEEEEeC----CCcEEEEEcCC--Cc-cceeec----CCCCeEEEEeecC-CCEEE-EccCC
Q 036314          269 SSHNSWISACKWHNKSWFHLISASY----DGKVMLWDLRT--AW-PLSVID----SHKDKVLCADWWR-GDSVI-SGGVD  335 (347)
Q Consensus       269 ~~h~~~v~~v~~s~~~~~~l~s~s~----D~~i~lwd~~~--~~-~~~~~~----~h~~~v~~~~~~~-~~~l~-s~s~D  335 (347)
                      ..+...+..+.++ ++..+++++..    ++..+||.+..  +. ....+.    +|...+..+.|++ +++++ +++.+
T Consensus       353 t~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~  431 (719)
T 1z68_A          353 TSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGP  431 (719)
T ss_dssp             SCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCB
T ss_pred             ccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCC
Confidence            5555567777777 77665555554    58899998754  32 123332    3667788899985 56544 44433


Q ss_pred             --ceEEEeec
Q 036314          336 --SKLCVSSG  343 (347)
Q Consensus       336 --~~v~vw~~  343 (347)
                        ..+.+|+.
T Consensus       432 ~~p~~~l~d~  441 (719)
T 1z68_A          432 GIPISTLHDG  441 (719)
T ss_dssp             SSCEEEEECS
T ss_pred             CCCeEEEEEC
Confidence              35666653

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.73  E-value=3.2e-16  Score=153.66  Aligned_cols=276  Identities=11%  Similarity=0.080  Sum_probs=168.1

Q ss_pred             CCceeeccCCC-CCEEEEEecCCeEEEEcCC-CeEEEEeeccCCce-----EEEEEeecCCCceEEEEEccCC-------
Q 036314           24 DDWVSAVDGSN-PGFILTGCYDNLGRVWKAG-GVCTHILEGHCGAV-----SSVNIIKSDGLKYVTVATASKD-------   89 (347)
Q Consensus        24 ~~~v~~~~~~~-~~~l~sg~~d~~i~iw~~~-~~~~~~l~~h~~~V-----~~v~~~~~~~~~~~~l~s~s~D-------   89 (347)
                      ......+++++ +.+|+++  |++|++||.. +.+...+.+|....     ..+.|+|++    ..|+.++.+       
T Consensus        16 ~~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg----~~l~~~~~~~~~~r~~   89 (740)
T 4a5s_A           16 RLKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDG----QFILLEYNYVKQWRHS   89 (740)
T ss_dssp             CCCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTS----SEEEEEEEEEECSSSC
T ss_pred             cccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCC----CEEEEEECCeeeEEEc
Confidence            33455778774 4577775  9999999974 67777788887432     347788854    367888776       


Q ss_pred             --CcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCC
Q 036314           90 --QTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNN  167 (347)
Q Consensus        90 --g~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~  167 (347)
                        +.+.+||+.++++          ..+..|...+...+|||||+.||.+ .|+.|++|++.++....  ..  .     
T Consensus        90 ~~~~~~~~d~~~~~~----------~~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~--lt--~-----  149 (740)
T 4a5s_A           90 YTASYDIYDLNKRQL----------ITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYR--IT--W-----  149 (740)
T ss_dssp             EEEEEEEEETTTTEE----------CCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEE--CC--S-----
T ss_pred             cceEEEEEECCCCcE----------EEcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEE--Ec--C-----
Confidence              5566999987753          2345677889999999999999877 57899999987643210  00  0     


Q ss_pred             ccccccccccccccccCCcc---------ceEEEEe-CCCCeEEEEecCC------------------------------
Q 036314          168 QVEEPQLEGEAISTLVGHTQ---------CVSSVVW-PQQETIYSASWDH------------------------------  207 (347)
Q Consensus       168 ~~~~~~~~~~~~~~~~~h~~---------~v~~~~~-~~~~~l~s~s~dg------------------------------  207 (347)
                             .+.....+.++.+         ....+.| |+++.|+.++.|.                              
T Consensus       150 -------~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G  222 (740)
T 4a5s_A          150 -------TGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAG  222 (740)
T ss_dssp             -------CCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTT
T ss_pred             -------CCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCc
Confidence                   0000001112211         1123556 5777777765432                              


Q ss_pred             ------cEEEEECCC---Cc--eeeeee-------eCeeeEEEEeeCCCCcEEEEe----cCCCcEEEEeCCCCCC---C
Q 036314          208 ------SVRTWDVEM---GK--DLSDIF-------CGKALNCIDIGGEGSALIAAG----GSDPILRIWDPRKPGT---S  262 (347)
Q Consensus       208 ------~v~vwd~~~---~~--~~~~~~-------~~~~~~~~~~~~~~~~~la~~----~~d~~i~iwd~~~~~~---~  262 (347)
                            +|.+||+.+   +.  ....+.       ....+..++|+|++. +++..    ..+..|.+||+.....   .
T Consensus       223 ~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~-~~~~~~~r~~~~~~i~~~d~~tg~~~~~~  301 (740)
T 4a5s_A          223 AVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQER-ISLQWLRRIQNYSVMDICDYDESSGRWNC  301 (740)
T ss_dssp             SCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTE-EEEEEEESSTTEEEEEEEEEETTTTEEEE
T ss_pred             CcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCe-EEEEEeCCCCCEEEEEEEECCCCccccce
Confidence                  478899887   63  222332       223467788987654 44433    2344799999865320   0


Q ss_pred             CCeEEe--cCCCCCee-----EEEeCCCCCeEEEEEe-CCC--cEEEEEcCCCccceeecCCCCeEEEEeecCCCE-EEE
Q 036314          263 APVFQF--SSHNSWIS-----ACKWHNKSWFHLISAS-YDG--KVMLWDLRTAWPLSVIDSHKDKVLCADWWRGDS-VIS  331 (347)
Q Consensus       263 ~~~~~~--~~h~~~v~-----~v~~s~~~~~~l~s~s-~D~--~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s  331 (347)
                      .....+  .+|..+|.     ...|+|||..++...+ .+|  .|.+||+..++.. .+....-.|..+.+.++++ +.+
T Consensus       302 ~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~-~lT~g~~~v~~~~~~d~~~i~f~  380 (740)
T 4a5s_A          302 LVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCT-FITKGTWEVIGIEALTSDYLYYI  380 (740)
T ss_dssp             CGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCE-ESCCSSSCEEEEEEECSSEEEEE
T ss_pred             eEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceE-ecccCCEEEEEEEEEeCCEEEEE
Confidence            111222  56777776     7899999976442555 344  6888898866544 4444455666655444654 334


Q ss_pred             ccC
Q 036314          332 GGV  334 (347)
Q Consensus       332 ~s~  334 (347)
                      ++.
T Consensus       381 ~~~  383 (740)
T 4a5s_A          381 SNE  383 (740)
T ss_dssp             ESC
T ss_pred             Eec
Confidence            433

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.73  E-value=5.9e-16  Score=136.42  Aligned_cols=238  Identities=10%  Similarity=-0.020  Sum_probs=150.4

Q ss_pred             ceeeccCCC-CCE-EEEEecCCeEEEEcCC-CeEEEEeec-c----CCceEEEEEeecCCCceEEEEEcc----------
Q 036314           26 WVSAVDGSN-PGF-ILTGCYDNLGRVWKAG-GVCTHILEG-H----CGAVSSVNIIKSDGLKYVTVATAS----------   87 (347)
Q Consensus        26 ~v~~~~~~~-~~~-l~sg~~d~~i~iw~~~-~~~~~~l~~-h----~~~V~~v~~~~~~~~~~~~l~s~s----------   87 (347)
                      .+..+++++ +++ +++++.++.|++||.. +..+..+.. +    ...+..++|+|++.    .|++++          
T Consensus        35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~----~l~~~~~~~~~~~~~~  110 (337)
T 1pby_B           35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGK----TLAIYESPVRLELTHF  110 (337)
T ss_dssp             CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSS----EEEEEEEEEEECSSCE
T ss_pred             CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCC----EEEEEecccccccccc
Confidence            367788874 444 5667778999999974 555555442 2    22567889988543    466664          


Q ss_pred             --CCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccC
Q 036314           88 --KDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKG  165 (347)
Q Consensus        88 --~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~  165 (347)
                        .++.|++||+.+++.         ...+.. ...+.+++|+|+|++++.+  ++.|.+||+.+.....    ......
T Consensus       111 ~~~~~~i~v~d~~~~~~---------~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~----~~~~~~  174 (337)
T 1pby_B          111 EVQPTRVALYDAETLSR---------RKAFEA-PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVE----DKPIQS  174 (337)
T ss_dssp             EECCCEEEEEETTTTEE---------EEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEE----EECSTT
T ss_pred             cccCceEEEEECCCCcE---------EEEEeC-CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEee----eeeccc
Confidence              579999999976542         223332 3457788999999988877  6899999987643210    000000


Q ss_pred             CCccccccccccccccccCCccceEEEEe-CCCCeEEEEe--------------cCC----------cEEEEECCCCcee
Q 036314          166 NNQVEEPQLEGEAISTLVGHTQCVSSVVW-PQQETIYSAS--------------WDH----------SVRTWDVEMGKDL  220 (347)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~l~s~s--------------~dg----------~v~vwd~~~~~~~  220 (347)
                                         +...+   .| +++..++..+              .++          .|.+||+++++..
T Consensus       175 -------------------~~~~~---~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~  232 (337)
T 1pby_B          175 -------------------WEAET---YAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA  232 (337)
T ss_dssp             -------------------TTTTT---BCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE
T ss_pred             -------------------cCCCc---eeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce
Confidence                               00000   11 2222221111              111          5789999988754


Q ss_pred             eeeee---CeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcE
Q 036314          221 SDIFC---GKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKV  297 (347)
Q Consensus       221 ~~~~~---~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i  297 (347)
                       .+..   ...+..+++++++. .++++  ++.|++||+...   .....+. ....+.+++|+|++.+ |++++.|+.|
T Consensus       233 -~~~~~~~~~~~~~~~~s~dg~-~l~~~--~~~v~~~d~~~~---~~~~~~~-~~~~~~~~~~s~dg~~-l~~~~~~~~i  303 (337)
T 1pby_B          233 -MREVRIMDVFYFSTAVNPAKT-RAFGA--YNVLESFDLEKN---ASIKRVP-LPHSYYSVNVSTDGST-VWLGGALGDL  303 (337)
T ss_dssp             -EEEEEECSSCEEEEEECTTSS-EEEEE--ESEEEEEETTTT---EEEEEEE-CSSCCCEEEECTTSCE-EEEESBSSEE
T ss_pred             -EeecCCCCCceeeEEECCCCC-EEEEe--CCeEEEEECCCC---cCcceec-CCCceeeEEECCCCCE-EEEEcCCCcE
Confidence             2221   23456788877654 55555  799999998642   2233443 3346789999999875 6667889999


Q ss_pred             EEEEcCCCccceeecCC
Q 036314          298 MLWDLRTAWPLSVIDSH  314 (347)
Q Consensus       298 ~lwd~~~~~~~~~~~~h  314 (347)
                      ++||+++++.+..+..+
T Consensus       304 ~v~d~~~~~~~~~~~~~  320 (337)
T 1pby_B          304 AAYDAETLEKKGQVDLP  320 (337)
T ss_dssp             EEEETTTCCEEEEEECG
T ss_pred             EEEECcCCcEEEEEEcC
Confidence            99999998877776544

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.71  E-value=9.2e-16  Score=137.66  Aligned_cols=248  Identities=8%  Similarity=0.042  Sum_probs=151.8

Q ss_pred             CceeeccCC-CCCEEEEEecCCeEEEEcC--CCeEEEEeecc-CCceEEEEEeecCCCceEEEEEcc-------------
Q 036314           25 DWVSAVDGS-NPGFILTGCYDNLGRVWKA--GGVCTHILEGH-CGAVSSVNIIKSDGLKYVTVATAS-------------   87 (347)
Q Consensus        25 ~~v~~~~~~-~~~~l~sg~~d~~i~iw~~--~~~~~~~l~~h-~~~V~~v~~~~~~~~~~~~l~s~s-------------   87 (347)
                      ..+..++++ ++++|++++.+ .+++|+.  .+......... .+.+.+++|+|++.  ..++++++             
T Consensus        40 ~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~--~l~~~~~~~~~~~~~~~~~~~  116 (365)
T 1jof_A           40 EPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTR--AIFLLAAKQPPYAVYANPFYK  116 (365)
T ss_dssp             CCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCE--EEEEEECSSTTCCEEEEEESS
T ss_pred             CCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCC--EEEEEEecCCcceeccceeec
Confidence            356778887 45688899888 9999996  46554332211 13355677877432  11355654             


Q ss_pred             CCCcEEEEeccc-cccccCccccceeeeee-ccccceEEEEEeCCCCEEEEeeC-CCcEEEEecC-CCCCCCccceeeec
Q 036314           88 KDQTLRLWKFDA-EELVNHPKKIRSFKILR-GHKASVHSIAAETSGNMVCSGSW-DCTISLWRTN-DSDAAGNQVSIKKR  163 (347)
Q Consensus        88 ~Dg~v~~wd~~~-~~~~~~~~~~~~~~~~~-~h~~~V~~v~~s~~~~~l~sgs~-Dg~I~iwd~~-~~~~~~~~~~~~~~  163 (347)
                      .++++++|++.. +++.      ..+..+. .+...+.+++|+|||++++++.. ++.|++|++. ++...         
T Consensus       117 ~~g~v~v~~~~~~g~~~------~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~---------  181 (365)
T 1jof_A          117 FAGYGNVFSVSETGKLE------KNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVE---------  181 (365)
T ss_dssp             SCCEEEEEEECTTCCEE------EEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEE---------
T ss_pred             CCceEEEEccCCCCcCc------ceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEE---------
Confidence            689999999963 3321      1111111 24567899999999998887654 6899999986 33110         


Q ss_pred             cCCCcccccccccccccccc--CCccceEEEEe-CCCCeEEEEec-CCcEEEEECC--CCceee---eee---eC----e
Q 036314          164 KGNNQVEEPQLEGEAISTLV--GHTQCVSSVVW-PQQETIYSASW-DHSVRTWDVE--MGKDLS---DIF---CG----K  227 (347)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~--~h~~~v~~~~~-~~~~~l~s~s~-dg~v~vwd~~--~~~~~~---~~~---~~----~  227 (347)
                                    .+..+.  .|...+..++| |+++++++++. +++|.+|++.  +++...   .+.   ..    .
T Consensus       182 --------------~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~  247 (365)
T 1jof_A          182 --------------LVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRD  247 (365)
T ss_dssp             --------------EEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBC
T ss_pred             --------------EeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcc
Confidence                          011111  12345677887 57778877765 6899999764  454321   121   11    1


Q ss_pred             -------eeEEEE-eeCCCCcEEEEecCCC-----cEEEEeCCCCCCCCCeE-EecCCCCCeeEEEeCC---CCCeEEEE
Q 036314          228 -------ALNCID-IGGEGSALIAAGGSDP-----ILRIWDPRKPGTSAPVF-QFSSHNSWISACKWHN---KSWFHLIS  290 (347)
Q Consensus       228 -------~~~~~~-~~~~~~~~la~~~~d~-----~i~iwd~~~~~~~~~~~-~~~~h~~~v~~v~~s~---~~~~~l~s  290 (347)
                             .+..++ ++|++..++++...++     .|++|++...+....+. ....+......++|+|   ++.+ |++
T Consensus       248 ~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~-l~v  326 (365)
T 1jof_A          248 PETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEW-MAI  326 (365)
T ss_dssp             TTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTE-EEE
T ss_pred             cccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCE-EEE
Confidence                   366788 8776554444332233     89999986322211111 1333555667889999   7765 666


Q ss_pred             EeC-CCcEEEEEcCCC
Q 036314          291 ASY-DGKVMLWDLRTA  305 (347)
Q Consensus       291 ~s~-D~~i~lwd~~~~  305 (347)
                      ++. +++|++|+++..
T Consensus       327 ~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          327 TDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             ECSSSCEEEEEEEETT
T ss_pred             EEcCCCeEEEEEEchh
Confidence            665 589999999764

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.70  E-value=4.1e-14  Score=122.21  Aligned_cols=241  Identities=12%  Similarity=0.168  Sum_probs=160.7

Q ss_pred             CCCcCCceeeccCC-CCCEEEEEecCCeEEEEcCCCeEEEEee------ccCCceEEEEEeecCCCceEEEEEcc-CCCc
Q 036314           20 PSLHDDWVSAVDGS-NPGFILTGCYDNLGRVWKAGGVCTHILE------GHCGAVSSVNIIKSDGLKYVTVATAS-KDQT   91 (347)
Q Consensus        20 ~~~h~~~v~~~~~~-~~~~l~sg~~d~~i~iw~~~~~~~~~l~------~h~~~V~~v~~~~~~~~~~~~l~s~s-~Dg~   91 (347)
                      ..+|-..+.+++++ ++.++++...++.|++||..+.....+.      +|...+..+++.+.++   ..+++.. .++.
T Consensus        25 ~~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g---~l~v~~~~~~~~  101 (286)
T 1q7f_A           25 MEGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSG---DIIVTERSPTHQ  101 (286)
T ss_dssp             STTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTT---EEEEEECGGGCE
T ss_pred             CCCccCCCceEEECCCCCEEEEECCCCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCC---eEEEEcCCCCCE
Confidence            34566778888877 4668888888999999998887766654      2445678888853332   3445443 3889


Q ss_pred             EEEEeccccccccCccccceeeeee-ccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccc
Q 036314           92 LRLWKFDAEELVNHPKKIRSFKILR-GHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVE  170 (347)
Q Consensus        92 v~~wd~~~~~~~~~~~~~~~~~~~~-~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~  170 (347)
                      |++||.+ ++.         +..+. .+...+.+++++++|+++++...++.|.+|+....                   
T Consensus       102 i~~~d~~-g~~---------~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~-------------------  152 (286)
T 1q7f_A          102 IQIYNQY-GQF---------VRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGN-------------------  152 (286)
T ss_dssp             EEEECTT-SCE---------EEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSC-------------------
T ss_pred             EEEECCC-CcE---------EEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCC-------------------
Confidence            9999943 321         22222 34456889999999998888888999999985321                   


Q ss_pred             cccccccccccc--cCCccceEEEEeC-CCCeEEEEecCCcEEEEECCCCceeeeeeeC---eeeEEEEeeCCCCcEEEE
Q 036314          171 EPQLEGEAISTL--VGHTQCVSSVVWP-QQETIYSASWDHSVRTWDVEMGKDLSDIFCG---KALNCIDIGGEGSALIAA  244 (347)
Q Consensus       171 ~~~~~~~~~~~~--~~h~~~v~~~~~~-~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~la~  244 (347)
                             .+..+  .++...+..+++. ++..+++.+.++.|++||.. +..+..+...   ..+..+++++++ .++++
T Consensus       153 -------~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G-~l~v~  223 (286)
T 1q7f_A          153 -------VLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNG-EILIA  223 (286)
T ss_dssp             -------EEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTC-CEEEE
T ss_pred             -------EEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCC-CEEEE
Confidence                   01111  1233456778875 45555666678999999974 4444444322   346778887654 67777


Q ss_pred             ecCCC-cEEEEeCCCCCCCCCeEEecCCC--CCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCcc
Q 036314          245 GGSDP-ILRIWDPRKPGTSAPVFQFSSHN--SWISACKWHNKSWFHLISASYDGKVMLWDLRTAWP  307 (347)
Q Consensus       245 ~~~d~-~i~iwd~~~~~~~~~~~~~~~h~--~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~  307 (347)
                      ...++ .|.+||...  .  .+..+..+.  ..+.+++++|++ .++++ +.|++|++|++....+
T Consensus       224 ~~~~~~~i~~~~~~g--~--~~~~~~~~~~~~~~~~i~~~~~g-~l~vs-~~~~~v~v~~~~~~~p  283 (286)
T 1q7f_A          224 DNHNNFNLTIFTQDG--Q--LISALESKVKHAQCFDVALMDDG-SVVLA-SKDYRLYIYRYVQLAP  283 (286)
T ss_dssp             ECSSSCEEEEECTTS--C--EEEEEEESSCCSCEEEEEEETTT-EEEEE-ETTTEEEEEECSCCCC
T ss_pred             eCCCCEEEEEECCCC--C--EEEEEcccCCCCcceeEEECCCC-cEEEE-CCCCeEEEEEcccccc
Confidence            76675 999999642  2  234444433  347789999988 45555 6799999999876544

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.67  E-value=1.5e-13  Score=121.43  Aligned_cols=245  Identities=13%  Similarity=0.058  Sum_probs=163.0

Q ss_pred             CceEEEEEeecCCCceEEEEEccCC------------------------CcEEEEeccccccccCccccceeeeee-ccc
Q 036314           65 GAVSSVNIIKSDGLKYVTVATASKD------------------------QTLRLWKFDAEELVNHPKKIRSFKILR-GHK  119 (347)
Q Consensus        65 ~~V~~v~~~~~~~~~~~~l~s~s~D------------------------g~v~~wd~~~~~~~~~~~~~~~~~~~~-~h~  119 (347)
                      +.+.+|++.+++    ..+++.+.+                        ++|.+||..++++.         ..+. ++-
T Consensus        24 ~~v~~va~d~~G----~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~---------~~~~~~~~   90 (329)
T 3fvz_A           24 GQVSGVALDSKN----NLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEIL---------QSSGKNLF   90 (329)
T ss_dssp             SCEEEEEECTTC----CEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEE---------EEECTTTC
T ss_pred             CCceEEEECCCC----CEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEE---------eccCCCcc
Confidence            457778887743    245666655                        57999998766532         1222 344


Q ss_pred             cceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEeC--CC
Q 036314          120 ASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWP--QQ  197 (347)
Q Consensus       120 ~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~  197 (347)
                      .....++++++|+++++...++.|++|+......   .........        ..+    .-.++-.....+++.  ++
T Consensus        91 ~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~---~~~~~~~~~--------~~g----~~~~~~~~P~~ia~~~~~g  155 (329)
T 3fvz_A           91 YLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEG---PLLILGRSM--------QPG----SDQNHFCQPTDVAVEPSTG  155 (329)
T ss_dssp             SSEEEEEECTTSCEEEEETTTTEEEEECTTCSSC---CSEEESBTT--------BCC----CSTTCCSSEEEEEECTTTC
T ss_pred             CCceEEEECCCCCEEEEECCCCEEEEEeCCCCeE---EEEEecccC--------CCC----CCccccCCCcEEEEeCCCC
Confidence            5788999999999999999999999998653210   000000000        000    001233456788885  45


Q ss_pred             CeEEEEe-cCCcEEEEECCCCceeeeeee-C----------eeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCe
Q 036314          198 ETIYSAS-WDHSVRTWDVEMGKDLSDIFC-G----------KALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPV  265 (347)
Q Consensus       198 ~~l~s~s-~dg~v~vwd~~~~~~~~~~~~-~----------~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~  265 (347)
                      ..+++.+ .++.|++|| .++..+..+.. +          ..+..++++++++.++++...++.|++||+... .  .+
T Consensus       156 ~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G-~--~~  231 (329)
T 3fvz_A          156 AVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTK-E--FV  231 (329)
T ss_dssp             CEEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTC-C--EE
T ss_pred             eEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCC-c--EE
Confidence            5556655 589999999 55665554421 1          126788888776778888888999999998632 2  23


Q ss_pred             EEe--cCCCCCeeEEEeCCCCCeEEEEEe-------CCCcEEEEEcCCCccceee---cCCCCeEEEEeecC-CCEEEEc
Q 036314          266 FQF--SSHNSWISACKWHNKSWFHLISAS-------YDGKVMLWDLRTAWPLSVI---DSHKDKVLCADWWR-GDSVISG  332 (347)
Q Consensus       266 ~~~--~~h~~~v~~v~~s~~~~~~l~s~s-------~D~~i~lwd~~~~~~~~~~---~~h~~~v~~~~~~~-~~~l~s~  332 (347)
                      ..+  ..+...+..++|+| + ..+++.+       .+.+|++||..+++.+..+   .+|...+.++++++ |..+++.
T Consensus       232 ~~~~~~~~~~~~~~~~~~p-g-~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad  309 (329)
T 3fvz_A          232 REIKHASFGRNVFAISYIP-G-FLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGD  309 (329)
T ss_dssp             EEECCTTTTTCEEEEEEET-T-EEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEE
T ss_pred             EEEeccccCCCcceeeecC-C-EEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEE
Confidence            344  45667788999999 3 3333332       3458999999999888777   36777889999975 6678888


Q ss_pred             cCCceEEEeec
Q 036314          333 GVDSKLCVSSG  343 (347)
Q Consensus       333 s~D~~v~vw~~  343 (347)
                      ..+++|++|+.
T Consensus       310 ~~~~~I~~~~~  320 (329)
T 3fvz_A          310 AHTNTVWKFTL  320 (329)
T ss_dssp             SSSCCEEEEEE
T ss_pred             CCCCEEEEEeC
Confidence            89999999975

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.67  E-value=5.3e-14  Score=124.23  Aligned_cols=270  Identities=11%  Similarity=0.075  Sum_probs=169.9

Q ss_pred             CceeeccCCC-CCEEEEEecCCeEEEEcCCCeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccc
Q 036314           25 DWVSAVDGSN-PGFILTGCYDNLGRVWKAGGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELV  103 (347)
Q Consensus        25 ~~v~~~~~~~-~~~l~sg~~d~~i~iw~~~~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~  103 (347)
                      ..|.+++++. ...+++.+.++.++.|  .+.....+.++...+.+++|.+++    ..++++..++.|.+||.++++. 
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g----~l~~~~~~~~~i~~~d~~~~~~-   78 (333)
T 2dg1_A            6 QDLPTLFYSGKSNSAVPIISESELQTI--TAEPWLEISKKGLQLEGLNFDRQG----QLFLLDVFEGNIFKINPETKEI-   78 (333)
T ss_dssp             CCCCBCCSCGGGGCSSCCCCGGGSCEE--ECEEEEEEESSCCCEEEEEECTTS----CEEEEETTTCEEEEECTTTCCE-
T ss_pred             cccceeeecCCccceeEEeecccCccc--ccceeEEEeccCccccCcEECCCC----CEEEEECCCCEEEEEeCCCCcE-
Confidence            3467788874 3456666788899999  355566677777778899998743    3566788899999999876542 


Q ss_pred             cCccccceeeeeeccccceEEEEEeCCCCEEEEeeCC----CcEEEEecCCCCCCCccceeeeccCCCcccccccccccc
Q 036314          104 NHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWD----CTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAI  179 (347)
Q Consensus       104 ~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~D----g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (347)
                              ...+..+...+.+++++++|+++++...+    +.|.+||.......                      ..+
T Consensus        79 --------~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~----------------------~~~  128 (333)
T 2dg1_A           79 --------KRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQ----------------------DII  128 (333)
T ss_dssp             --------EEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCE----------------------EEE
T ss_pred             --------EEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEE----------------------EEE
Confidence                    11122456779999999999988877766    68999987643210                      000


Q ss_pred             ccccCCccceEEEEeC-CCCeEEEEec------CCcEEEEECCCCceeeeeeeCeeeEEEEeeCCCCcEEEEecCCCcEE
Q 036314          180 STLVGHTQCVSSVVWP-QQETIYSASW------DHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEGSALIAAGGSDPILR  252 (347)
Q Consensus       180 ~~~~~h~~~v~~~~~~-~~~~l~s~s~------dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~d~~i~  252 (347)
                       .-..+...+..+++. ++..+++...      .+.|..+|...++.............+++++++..++++...++.|.
T Consensus       129 -~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~  207 (333)
T 2dg1_A          129 -EDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLH  207 (333)
T ss_dssp             -CSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEE
T ss_pred             -ccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCCCCeEE
Confidence             001123456777774 5555555443      24566666554433221111223567888776554666666788999


Q ss_pred             EEeCCCCCCCCC------eEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecCCCC------eEEE
Q 036314          253 IWDPRKPGTSAP------VFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKD------KVLC  320 (347)
Q Consensus       253 iwd~~~~~~~~~------~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h~~------~v~~  320 (347)
                      +||++..+....      ...+.++ ..+..+++++++. +.++...++.|.+||.+ ++.+..+..+..      .+.+
T Consensus       208 ~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~-l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~g~~~~~~~  284 (333)
T 2dg1_A          208 RIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDN-LYVAMYGQGRVLVFNKR-GYPIGQILIPGRDEGHMLRSTH  284 (333)
T ss_dssp             EEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCC-EEEEEETTTEEEEECTT-SCEEEEEECTTGGGTCSCBCCE
T ss_pred             EEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCC-EEEEEcCCCEEEEECCC-CCEEEEEEcCCCccccccCcce
Confidence            999853221110      0112222 4677899999985 56666678899999984 555555543332      6788


Q ss_pred             EeecC-CCEEEEccCC
Q 036314          321 ADWWR-GDSVISGGVD  335 (347)
Q Consensus       321 ~~~~~-~~~l~s~s~D  335 (347)
                      ++|++ ++.|..++.+
T Consensus       285 ~~~~~dg~~L~v~~~~  300 (333)
T 2dg1_A          285 PQFIPGTNQLIICSND  300 (333)
T ss_dssp             EEECTTSCEEEEEEEC
T ss_pred             EEECCCCCEEEEEeCc
Confidence            99975 4565443433

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.66  E-value=1.1e-13  Score=122.25  Aligned_cols=247  Identities=13%  Similarity=0.049  Sum_probs=163.6

Q ss_pred             CCceeeccCC-CCCEEEEEecC------------------------CeEEEEcCC-CeEEEEee-ccCCceEEEEEeecC
Q 036314           24 DDWVSAVDGS-NPGFILTGCYD------------------------NLGRVWKAG-GVCTHILE-GHCGAVSSVNIIKSD   76 (347)
Q Consensus        24 ~~~v~~~~~~-~~~~l~sg~~d------------------------~~i~iw~~~-~~~~~~l~-~h~~~V~~v~~~~~~   76 (347)
                      -+.+.+++++ +++++++.+.+                        ++|.+||.. +.....+. ++-.....+++.+++
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g  102 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG  102 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence            4668889987 46678887777                        479999985 77665554 454678899998744


Q ss_pred             CCceEEEEEccCCCcEEEEeccccccccCccccceeeee---------eccccceEEEEEeC-CCCEEEEee-CCCcEEE
Q 036314           77 GLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKIL---------RGHKASVHSIAAET-SGNMVCSGS-WDCTISL  145 (347)
Q Consensus        77 ~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~---------~~h~~~V~~v~~s~-~~~~l~sgs-~Dg~I~i  145 (347)
                          ..+++.+.++.|++|+.+....        .+..+         .++-.....++++| ++.++++.+ .++.|++
T Consensus       103 ----~l~v~d~~~~~v~~~~~~g~~~--------~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~  170 (329)
T 3fvz_A          103 ----NYWVTDVALHQVFKLDPHSKEG--------PLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQ  170 (329)
T ss_dssp             ----CEEEEETTTTEEEEECTTCSSC--------CSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEE
T ss_pred             ----CEEEEECCCCEEEEEeCCCCeE--------EEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEE
Confidence                3678888899999999764310        11122         23455688999999 788888887 6999999


Q ss_pred             EecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEe-CC-CCeEEEEecCCcEEEEECCCCceeeee
Q 036314          146 WRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW-PQ-QETIYSASWDHSVRTWDVEMGKDLSDI  223 (347)
Q Consensus       146 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~-~~~l~s~s~dg~v~vwd~~~~~~~~~~  223 (347)
                      |+.. +..    ..........           .....++-.....+++ ++ +..+++...++.|++||..+++.+..+
T Consensus       171 ~~~~-g~~----~~~~~~~g~~-----------~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~  234 (329)
T 3fvz_A          171 FSPS-GKF----VTQWGEESSG-----------SSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREI  234 (329)
T ss_dssp             ECTT-SCE----EEEECEECCS-----------SSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred             EcCC-CCE----EEEeccCCCC-----------CCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEE
Confidence            9843 211    1000000000           0000112233567777 45 455667777889999999878877666


Q ss_pred             ee---CeeeEEEEeeCCCCcEEEEe-------cCCCcEEEEeCCCCCCCCCeEEe---cCCCCCeeEEEeCCCCCeEEEE
Q 036314          224 FC---GKALNCIDIGGEGSALIAAG-------GSDPILRIWDPRKPGTSAPVFQF---SSHNSWISACKWHNKSWFHLIS  290 (347)
Q Consensus       224 ~~---~~~~~~~~~~~~~~~~la~~-------~~d~~i~iwd~~~~~~~~~~~~~---~~h~~~v~~v~~s~~~~~~l~s  290 (347)
                      ..   ...+..+++.|  +..+++.       ..+..|++||+...   ..+..+   .++......++++|++ .++++
T Consensus       235 ~~~~~~~~~~~~~~~p--g~~~~~~g~~~v~~~~~~~v~~~~~~~g---~~~~~~~~~~~~~~~p~~ia~~~dG-~lyva  308 (329)
T 3fvz_A          235 KHASFGRNVFAISYIP--GFLFAVNGKPYFGDQEPVQGFVMNFSSG---EIIDVFKPVRKHFDMPHDIVASEDG-TVYIG  308 (329)
T ss_dssp             CCTTTTTCEEEEEEET--TEEEEEECCCCTTCSCCCCEEEEETTTC---CEEEEECCSSSCCSSEEEEEECTTS-EEEEE
T ss_pred             eccccCCCcceeeecC--CEEEEeCCCEEeccCCCcEEEEEEcCCC---eEEEEEcCCCCccCCeeEEEECCCC-CEEEE
Confidence            32   23456677765  2333332       33458999998643   224444   3677789999999998 67888


Q ss_pred             EeCCCcEEEEEcCC
Q 036314          291 ASYDGKVMLWDLRT  304 (347)
Q Consensus       291 ~s~D~~i~lwd~~~  304 (347)
                      ...+++|++|+++.
T Consensus       309 d~~~~~I~~~~~~~  322 (329)
T 3fvz_A          309 DAHTNTVWKFTLTE  322 (329)
T ss_dssp             ESSSCCEEEEEEEE
T ss_pred             ECCCCEEEEEeCCc
Confidence            88999999999864

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.64  E-value=1.2e-13  Score=122.42  Aligned_cols=256  Identities=11%  Similarity=0.100  Sum_probs=152.9

Q ss_pred             CceeeccCCCCCEEEEE---------ecCCeEEEEcCCCeEEEEeeccCCceEEEEEeecCCCceEEEEEccCC---Cc-
Q 036314           25 DWVSAVDGSNPGFILTG---------CYDNLGRVWKAGGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKD---QT-   91 (347)
Q Consensus        25 ~~v~~~~~~~~~~l~sg---------~~d~~i~iw~~~~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~D---g~-   91 (347)
                      ..+..+++ ++..|+..         +.++.+.+|+..+...+.+    ..+..+.|+|++.    .|+..+.+   +. 
T Consensus        15 ~~~~~~~~-dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l----~~~~~~~~SpDg~----~la~~~~~~~~~~~   85 (347)
T 2gop_A           15 AYLSDPRT-KGELVAYVLTKANLKDNKYENTIVIENLKNNARRFI----ENATMPRISPDGK----KIAFMRANEEKKVS   85 (347)
T ss_dssp             CEEEEEEE-ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEEE----ESCEEEEECTTSS----EEEEEEEETTTTEE
T ss_pred             EEcccceE-CCcEEEEEEeecCcccCCccceEEEEeCCCCceEEc----ccCCCeEECCCCC----EEEEEEeccCCCcc
Confidence            45666666 77766653         2366889999764333444    4578899999553    46655543   33 


Q ss_pred             -EEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCC---------------------------CcE
Q 036314           92 -LRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWD---------------------------CTI  143 (347)
Q Consensus        92 -v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~D---------------------------g~I  143 (347)
                       |.+|++.+++.         . .+..+.. +..++|+|||+.|+.++.+                           ..|
T Consensus        86 ~l~~~~~~~g~~---------~-~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l  154 (347)
T 2gop_A           86 EIWVADLETLSS---------K-KILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTF  154 (347)
T ss_dssp             EEEEEETTTTEE---------E-EEEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEE
T ss_pred             eEEEEECCCCce---------E-EEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceE
Confidence             66777765432         1 2222333 8899999999988877643                           457


Q ss_pred             EEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEe-CCCCeEEEEecCC-------cEEEEECC
Q 036314          144 SLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW-PQQETIYSASWDH-------SVRTWDVE  215 (347)
Q Consensus       144 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~l~s~s~dg-------~v~vwd~~  215 (347)
                      .+||+.++.                         .+..+.. . .+..+.| |++ .++++..+.       ...||.+.
T Consensus       155 ~~~d~~~~~-------------------------~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d  206 (347)
T 2gop_A          155 WIFDTESEE-------------------------VIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE  206 (347)
T ss_dssp             EEEETTTTE-------------------------EEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE
T ss_pred             EEEECCCCe-------------------------EEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeC
Confidence            777765431                         1011222 1 4456666 566 666665542       34555444


Q ss_pred             CCceeeeeeeCeeeEEEEeeCCCCcEEEEecC-------CCcEEEEeCCCCCCCCCeEEecCCCCCeeE-EEeCCCCCeE
Q 036314          216 MGKDLSDIFCGKALNCIDIGGEGSALIAAGGS-------DPILRIWDPRKPGTSAPVFQFSSHNSWISA-CKWHNKSWFH  287 (347)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~-------d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~-v~~s~~~~~~  287 (347)
                      +++ ...+.......  .++|++..++..+..       ...|.+|| .  +.  ......+|...+.. +.|+ ++  +
T Consensus       207 ~~~-~~~l~~~~~~~--~~spdg~~l~~~~~~~~~~~~~~~~l~~~d-~--~~--~~~l~~~~~~~~~~~~~~s-dg--~  275 (347)
T 2gop_A          207 DGK-EEKMFEKVSFY--AVDSDGERILLYGKPEKKYMSEHNKLYIYD-G--KE--VMGILDEVDRGVGQAKIKD-GK--V  275 (347)
T ss_dssp             TTE-EEEEEEEESEE--EEEECSSCEEEEECCSSSCCCSSCEEEEEC-S--SC--EEESSTTCCSEEEEEEEET-TE--E
T ss_pred             CCc-eEEeccCccee--eECCCCCEEEEEEccccCCccccceEEEEC-C--Cc--eEeccccCCcccCCccEEc-Cc--E
Confidence            443 33333222222  335555444433322       24688888 2  22  12233455667776 8998 76  6


Q ss_pred             EEEEeCCCcEEEEEcCCCccceeecCCCCeEEEEeecCCCEEEEccCCceE-EEee
Q 036314          288 LISASYDGKVMLWDLRTAWPLSVIDSHKDKVLCADWWRGDSVISGGVDSKL-CVSS  342 (347)
Q Consensus       288 l~s~s~D~~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~D~~v-~vw~  342 (347)
                      +++++.++.++|| +++++. ..+..+.+.|.++.|++ ..+++++.+++. .||.
T Consensus       276 ~~~~~~~~~~~l~-~~~g~~-~~~~~~~~~v~~~~~s~-~~~~~~~~~~~~~~l~~  328 (347)
T 2gop_A          276 YFTLFEEGSVNLY-IWDGEI-KPIAKGRHWIMGFDVDE-IVVYLKETATRLRELFT  328 (347)
T ss_dssp             EEEEEETTEEEEE-EESSSE-EEEECSSSEEEEEEESS-SEEEEEECSSSCCEEEE
T ss_pred             EEEEecCCcEEEE-EcCCce-EEEecCCCeEEeeeeeC-cEEEEEcCCCChHHheE
Confidence            8899999999999 885543 44445678899999999 777777766654 6664

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.63  E-value=5e-13  Score=115.36  Aligned_cols=234  Identities=11%  Similarity=0.163  Sum_probs=156.1

Q ss_pred             ccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeee------eccccceEEEEE-eCCCCEE
Q 036314           62 GHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKIL------RGHKASVHSIAA-ETSGNMV  134 (347)
Q Consensus        62 ~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~------~~h~~~V~~v~~-s~~~~~l  134 (347)
                      +|-..+.++++.+++    ..+++.+.++.|++||.+.. .         ...+      .+|...+..+++ .++++++
T Consensus        27 g~~~~p~~v~~~~~g----~l~v~~~~~~~i~~~d~~g~-~---------~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~   92 (286)
T 1q7f_A           27 GQFTEPSGVAVNAQN----DIIVADTNNHRIQIFDKEGR-F---------KFQFGECGKRDSQLLYPNRVAVVRNSGDII   92 (286)
T ss_dssp             TCBSCEEEEEECTTC----CEEEEEGGGTEEEEECTTSC-E---------EEEECCBSSSTTCBSSEEEEEEETTTTEEE
T ss_pred             CccCCCceEEECCCC----CEEEEECCCCEEEEECCCCc-E---------EEEecccCCCcccccCceEEEEEcCCCeEE
Confidence            444567889888743    35777788999999997632 1         1112      234567889999 4777777


Q ss_pred             EEeeC-CCcEEEEecCCCCCCCccceeeeccCCCcccccccccccccccc-CCccceEEEEe-CCCCeEEEEecCCcEEE
Q 036314          135 CSGSW-DCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLV-GHTQCVSSVVW-PQQETIYSASWDHSVRT  211 (347)
Q Consensus       135 ~sgs~-Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~-~~~~~l~s~s~dg~v~v  211 (347)
                      ++... ++.|++|+.. +.                         .+..+. .+...+.++++ ++++.+++...++.|.+
T Consensus        93 v~~~~~~~~i~~~d~~-g~-------------------------~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~  146 (286)
T 1q7f_A           93 VTERSPTHQIQIYNQY-GQ-------------------------FVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVII  146 (286)
T ss_dssp             EEECGGGCEEEEECTT-SC-------------------------EEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEE
T ss_pred             EEcCCCCCEEEEECCC-Cc-------------------------EEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEE
Confidence            76643 8999999832 21                         111111 12335677877 46666666667889999


Q ss_pred             EECCCCceeeeeee---CeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCC--CCCeeEEEeCCCCCe
Q 036314          212 WDVEMGKDLSDIFC---GKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSH--NSWISACKWHNKSWF  286 (347)
Q Consensus       212 wd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h--~~~v~~v~~s~~~~~  286 (347)
                      ||.. ++.+..+..   ...+..+++.++ +.++++...++.|++||...    ..+..+..+  ......++++|++. 
T Consensus       147 ~~~~-g~~~~~~~~~~~~~~p~~i~~~~~-g~l~v~~~~~~~i~~~~~~g----~~~~~~~~~g~~~~p~~i~~d~~G~-  219 (286)
T 1q7f_A          147 FDQN-GNVLHKFGCSKHLEFPNGVVVNDK-QEIFISDNRAHCVKVFNYEG----QYLRQIGGEGITNYPIGVGINSNGE-  219 (286)
T ss_dssp             ECTT-SCEEEEEECTTTCSSEEEEEECSS-SEEEEEEGGGTEEEEEETTC----CEEEEESCTTTSCSEEEEEECTTCC-
T ss_pred             EcCC-CCEEEEeCCCCccCCcEEEEECCC-CCEEEEECCCCEEEEEcCCC----CEEEEEccCCccCCCcEEEECCCCC-
Confidence            9954 554444432   124678888765 45777777789999999742    124445433  36788999999984 


Q ss_pred             EEEEEeCCC-cEEEEEcCCCccceeecCCC--CeEEEEeecC-CCEEEEccCCceEEEeecc
Q 036314          287 HLISASYDG-KVMLWDLRTAWPLSVIDSHK--DKVLCADWWR-GDSVISGGVDSKLCVSSGV  344 (347)
Q Consensus       287 ~l~s~s~D~-~i~lwd~~~~~~~~~~~~h~--~~v~~~~~~~-~~~l~s~s~D~~v~vw~~~  344 (347)
                      ++++...++ .|.+||.+ ++.+..+..+.  ..+.++++.+ |+.+++ +.|++|++|+-.
T Consensus       220 l~v~~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~  279 (286)
T 1q7f_A          220 ILIADNHNNFNLTIFTQD-GQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYV  279 (286)
T ss_dssp             EEEEECSSSCEEEEECTT-SCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECS
T ss_pred             EEEEeCCCCEEEEEECCC-CCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcc
Confidence            577777775 99999964 55566665443  3477899975 555666 679999999865

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.63  E-value=6.3e-14  Score=125.52  Aligned_cols=256  Identities=11%  Similarity=0.034  Sum_probs=159.3

Q ss_pred             cCCeEEEEcC-CCeEEEEeeccCCceEEEEEeecCCCceEEEEEcc----------CCCcEEEEeccccccccCccccce
Q 036314           43 YDNLGRVWKA-GGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATAS----------KDQTLRLWKFDAEELVNHPKKIRS  111 (347)
Q Consensus        43 ~d~~i~iw~~-~~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s----------~Dg~v~~wd~~~~~~~~~~~~~~~  111 (347)
                      .|++|.+||. .++.+..+..+..+  .++|+|++.    +|+.++          .+++|.+||+.+.+.         
T Consensus        29 ~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~----~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~---------   93 (361)
T 2oiz_A           29 TESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGK----KIYTMTTYHERITRGKRSDVVEVWDADKLTF---------   93 (361)
T ss_dssp             GGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSS----EEEEEEEEETTSSSSCEEEEEEEEETTTCCE---------
T ss_pred             ccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCC----EEEEEEecccccccCCCCCEEEEEECcCCcE---------
Confidence            4789999996 46666677766554  899998543    455554          367899999876543         


Q ss_pred             eeeeec------cccceEEEEEeCCCCEEEEeeC--CCcEEEEecCCCCCCCccceeeeccCCCcccccccccccccc-c
Q 036314          112 FKILRG------HKASVHSIAAETSGNMVCSGSW--DCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAIST-L  182 (347)
Q Consensus       112 ~~~~~~------h~~~V~~v~~s~~~~~l~sgs~--Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  182 (347)
                      ...+..      +......++|+|||++|++++.  +++|.+||+.+...                         +.. +
T Consensus        94 ~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~-------------------------~~~~i  148 (361)
T 2oiz_A           94 EKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDY-------------------------VEDVT  148 (361)
T ss_dssp             EEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEE-------------------------EEEEG
T ss_pred             EEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcE-------------------------EEEEe
Confidence            222221      2234567899999999998874  68999999876421                         112 1


Q ss_pred             cCCccceEEEEeCCC-CeEEEEecCCcEEEEECCC-Cceeeeee------eCeeeEEEEeeCCCCcEEEEecCCCcEEEE
Q 036314          183 VGHTQCVSSVVWPQQ-ETIYSASWDHSVRTWDVEM-GKDLSDIF------CGKALNCIDIGGEGSALIAAGGSDPILRIW  254 (347)
Q Consensus       183 ~~h~~~v~~~~~~~~-~~l~s~s~dg~v~vwd~~~-~~~~~~~~------~~~~~~~~~~~~~~~~~la~~~~d~~i~iw  254 (347)
                      . +..+.....+|++ ..+++.+.||.+.+|++.. ++......      .......+...+++ ..++..+.++.+.++
T Consensus       149 ~-~~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~v~v~  226 (361)
T 2oiz_A          149 A-AAGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDK-DKAHFVSYYGNVYSA  226 (361)
T ss_dssp             G-GTTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECS-SEEEEEBTTSEEEEE
T ss_pred             c-CCCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccC-CEEEEEeCCCeEEEE
Confidence            1 1111112235654 5678889999999999865 44331111      01101111112233 334445578899999


Q ss_pred             eCCCCCCCCCeEEecC------CCC----CeeEEEeCCCCCeEEEEEeC----------CCcEEEEEcCCCccceeecCC
Q 036314          255 DPRKPGTSAPVFQFSS------HNS----WISACKWHNKSWFHLISASY----------DGKVMLWDLRTAWPLSVIDSH  314 (347)
Q Consensus       255 d~~~~~~~~~~~~~~~------h~~----~v~~v~~s~~~~~~l~s~s~----------D~~i~lwd~~~~~~~~~~~~h  314 (347)
                      |+.... ......+.-      +..    ...-++|+|++.+.+++.+.          +.+|.+||+++++.+.++..+
T Consensus       227 d~~~~~-~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~  305 (361)
T 2oiz_A          227 DFSGDE-VKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGR  305 (361)
T ss_dssp             ECSSSS-CEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECT
T ss_pred             EecCCC-ceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecC
Confidence            986321 111111110      111    11126889998775655541          348999999999999998877


Q ss_pred             CCeEEEEeecC-CCEEEEccCCceEEEeecc
Q 036314          315 KDKVLCADWWR-GDSVISGGVDSKLCVSSGV  344 (347)
Q Consensus       315 ~~~v~~~~~~~-~~~l~s~s~D~~v~vw~~~  344 (347)
                      .  +.+++|+| |++|++++. ++|.||+..
T Consensus       306 ~--p~~ia~spdg~~l~v~n~-~~v~v~D~~  333 (361)
T 2oiz_A          306 D--ALSMTIDQQRNLMLTLDG-GNVNVYDIS  333 (361)
T ss_dssp             T--CCEEEEETTTTEEEEECS-SCEEEEECS
T ss_pred             C--eeEEEECCCCCEEEEeCC-CeEEEEECC
Confidence            6  89999985 778777776 999999854

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.62  E-value=1.4e-14  Score=142.08  Aligned_cols=233  Identities=10%  Similarity=0.102  Sum_probs=148.4

Q ss_pred             CceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeeeeccccc-----eEEEEEeCCCCEEEEeeC
Q 036314           65 GAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKAS-----VHSIAAETSGNMVCSGSW  139 (347)
Q Consensus        65 ~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~-----V~~v~~s~~~~~l~sgs~  139 (347)
                      ....++.|++++    ..++++  |++|++||+.+++.         ...+.+|...     ..+++|||||++|+.++.
T Consensus        17 ~~~~~~~w~~dg----~~~~~~--~~~i~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~   81 (740)
T 4a5s_A           17 LKLYSLRWISDH----EYLYKQ--ENNILVFNAEYGNS---------SVFLENSTFDEFGHSINDYSISPDGQFILLEYN   81 (740)
T ss_dssp             CCCCCEEECSSS----EEEEEE--TTEEEEEETTTCCE---------EEEECTTTTTTCCSCCCEEEECTTSSEEEEEEE
T ss_pred             ccccccEECCCC----cEEEEc--CCcEEEEECCCCce---------EEEEechhhhhhcccccceEECCCCCEEEEEEC
Confidence            345688999843    467775  99999999987652         2345555433     234788999999998887


Q ss_pred             C---------CcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEe-CCCCeEEEEecCCcE
Q 036314          140 D---------CTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW-PQQETIYSASWDHSV  209 (347)
Q Consensus       140 D---------g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~l~s~s~dg~v  209 (347)
                      +         +.+.+||+.++.                          ...+..|...+...+| |+++.|+.+ .|+.|
T Consensus        82 ~~~~~r~~~~~~~~~~d~~~~~--------------------------~~~l~~~~~~~~~~~~SPdG~~la~~-~~~~i  134 (740)
T 4a5s_A           82 YVKQWRHSYTASYDIYDLNKRQ--------------------------LITEERIPNNTQWVTWSPVGHKLAYV-WNNDI  134 (740)
T ss_dssp             EEECSSSCEEEEEEEEETTTTE--------------------------ECCSSCCCTTEEEEEECSSTTCEEEE-ETTEE
T ss_pred             CeeeEEEccceEEEEEECCCCc--------------------------EEEcccCCCcceeeEECCCCCEEEEE-ECCeE
Confidence            7         456699987642                          2234456667888888 678888887 47899


Q ss_pred             EEEECCCCceeeeeeeCee-------------------eEEEEeeCCCCcEEEEecCC-C--------------------
Q 036314          210 RTWDVEMGKDLSDIFCGKA-------------------LNCIDIGGEGSALIAAGGSD-P--------------------  249 (347)
Q Consensus       210 ~vwd~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~la~~~~d-~--------------------  249 (347)
                      .+||+.++........+..                   ...+.|+|++ ..||....| .                    
T Consensus       135 ~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg-~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~  213 (740)
T 4a5s_A          135 YVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNG-TFLAYAQFNDTEVPLIEYSFYSDESLQYPKT  213 (740)
T ss_dssp             EEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTS-SEEEEEEEECTTCCEEEEEECCSTTCSSCEE
T ss_pred             EEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCC-CEEEEEEEcccCCceEEEEeecCCCCCCCcc
Confidence            9999988764332111110                   1236787655 455554321 1                    


Q ss_pred             ---------------cEEEEeCCC---CCCCCCeEEec------CCCCCeeEEEeCCCCCeEEEEEe----CCCcEEEEE
Q 036314          250 ---------------ILRIWDPRK---PGTSAPVFQFS------SHNSWISACKWHNKSWFHLISAS----YDGKVMLWD  301 (347)
Q Consensus       250 ---------------~i~iwd~~~---~~~~~~~~~~~------~h~~~v~~v~~s~~~~~~l~s~s----~D~~i~lwd  301 (347)
                                     .|++||+..   ... .....+.      +|..++.+++|+||+.. ++...    .+..|++||
T Consensus       214 ~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~wspdg~~-~~~~~~r~~~~~~i~~~d  291 (740)
T 4a5s_A          214 VRVPYPKAGAVNPTVKFFVVNTDSLSSVTN-ATSIQITAPASMLIGDHYLCDVTWATQERI-SLQWLRRIQNYSVMDICD  291 (740)
T ss_dssp             EEEECCBTTSCCCEEEEEEEETTSCCSSSC-CCEEEECCCHHHHTSCEEEEEEEEEETTEE-EEEEEESSTTEEEEEEEE
T ss_pred             eeecCCCCcCcCCeeEEEEEECCCCCCCCc-ceEEEecCCccCCCCCeEEEEEEEeCCCeE-EEEEeCCCCCEEEEEEEE
Confidence                           577888764   311 1233343      37888999999999863 44432    234799999


Q ss_pred             cCCCc----c--ceee--cCCCCeEE-----EEeecC-CCEEE-Ecc-CC--ceEEEee
Q 036314          302 LRTAW----P--LSVI--DSHKDKVL-----CADWWR-GDSVI-SGG-VD--SKLCVSS  342 (347)
Q Consensus       302 ~~~~~----~--~~~~--~~h~~~v~-----~~~~~~-~~~l~-s~s-~D--~~v~vw~  342 (347)
                      +.+++    +  +..+  ++|.+-|.     .+.|+| |+.|+ ..+ .+  ..|.+|+
T Consensus       292 ~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~  350 (740)
T 4a5s_A          292 YDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQ  350 (740)
T ss_dssp             EETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEE
T ss_pred             CCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEE
Confidence            99887    2  2223  45554443     678985 66665 554 34  4566665

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.62  E-value=9.1e-14  Score=125.19  Aligned_cols=249  Identities=8%  Similarity=-0.049  Sum_probs=149.7

Q ss_pred             CCeEEEEeeccCCceEE-----EEEeecCCCceEEEEEccC-CCc--EEEEeccccccccCccccceeeeeeccccceEE
Q 036314           53 GGVCTHILEGHCGAVSS-----VNIIKSDGLKYVTVATASK-DQT--LRLWKFDAEELVNHPKKIRSFKILRGHKASVHS  124 (347)
Q Consensus        53 ~~~~~~~l~~h~~~V~~-----v~~~~~~~~~~~~l~s~s~-Dg~--v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~  124 (347)
                      .+..+..+..|......     .+|+|++    ..|+.++. ++.  |.+||+.+++.         .....+|...+..
T Consensus        19 ~g~~~~~lt~~~~~~~~~~~~~~~~SpDg----~~l~~~~~~~g~~~l~~~d~~~g~~---------~~lt~~~~~~~~~   85 (388)
T 3pe7_A           19 TGAQVTRLTPPDVTCHRNYFYQKCFTRDG----SKLLFGGAFDGPWNYYLLDLNTQVA---------TQLTEGRGDNTFG   85 (388)
T ss_dssp             TCCEEEECSCTTSCEECCCTTSCCBCTTS----CEEEEEECTTSSCEEEEEETTTCEE---------EECCCSSCBCSSS
T ss_pred             CCcceEEecCCcccccchhhcCccCCCCC----CEEEEEEcCCCCceEEEEeCCCCce---------EEeeeCCCCCccc
Confidence            46677788888876666     7788854    35666666 774  77778776542         2333455555556


Q ss_pred             EEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEE---eCCCCeEE
Q 036314          125 IAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVV---WPQQETIY  201 (347)
Q Consensus       125 v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~---~~~~~~l~  201 (347)
                      ++|+|||+.|+.++.++.|++||+.++..                         ...+..+...+....   -+++..++
T Consensus        86 ~~~spdg~~l~~~~~~~~l~~~d~~~g~~-------------------------~~~~~~~~~~~~~~~~~~~~dg~~l~  140 (388)
T 3pe7_A           86 GFLSPDDDALFYVKDGRNLMRVDLATLEE-------------------------NVVYQVPAEWVGYGTWVANSDCTKLV  140 (388)
T ss_dssp             CEECTTSSEEEEEETTTEEEEEETTTCCE-------------------------EEEEECCTTEEEEEEEEECTTSSEEE
T ss_pred             eEEcCCCCEEEEEeCCCeEEEEECCCCcc-------------------------eeeeechhhcccccceeECCCCCeec
Confidence            78999999999999999999999876431                         111122222232222   24556555


Q ss_pred             EE----------------------ecCCcEEEEECCCCceeeeeeeCeeeEEEEeeC-CCCcEEEEecC------CCcEE
Q 036314          202 SA----------------------SWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGG-EGSALIAAGGS------DPILR  252 (347)
Q Consensus       202 s~----------------------s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~la~~~~------d~~i~  252 (347)
                      ..                      ..+..|.+||+.+++..........+..+.++| ++ ..|+....      ...|.
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg-~~l~~~~~~~~~~~~~~l~  219 (388)
T 3pe7_A          141 GIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQENQWLGHPIYRPYDD-STVAFCHEGPHDLVDARMW  219 (388)
T ss_dssp             EEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEE-EEEEEEECSCTTTSSCSEE
T ss_pred             cccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCCccccccEECCCCC-CEEEEEEecCCCCCcceEE
Confidence            32                      244679999999886544333444567888887 54 45544443      33788


Q ss_pred             EEeCCCCCCCCCeEEecCCC--CCeeEEEeCCCCCeEEEEEeCCC----cEEEEEcCCCccc--eeecCCCCeE---EEE
Q 036314          253 IWDPRKPGTSAPVFQFSSHN--SWISACKWHNKSWFHLISASYDG----KVMLWDLRTAWPL--SVIDSHKDKV---LCA  321 (347)
Q Consensus       253 iwd~~~~~~~~~~~~~~~h~--~~v~~v~~s~~~~~~l~s~s~D~----~i~lwd~~~~~~~--~~~~~h~~~v---~~~  321 (347)
                      ++|+... .   ...+..+.  ..+....|+||+..++..+..++    .|.+||+++++..  ..+.++....   ...
T Consensus       220 ~~d~~~~-~---~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~  295 (388)
T 3pe7_A          220 LINEDGT-N---MRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGS  295 (388)
T ss_dssp             EEETTSC-C---CEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSS
T ss_pred             EEeCCCC-c---eEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCC
Confidence            8887532 1   23444444  35778899999976433333322    3999999987642  2233211110   112


Q ss_pred             eecC-CCEEEEc---------cCCceEEEeecc
Q 036314          322 DWWR-GDSVISG---------GVDSKLCVSSGV  344 (347)
Q Consensus       322 ~~~~-~~~l~s~---------s~D~~v~vw~~~  344 (347)
                      .|+| |++|+..         ..+..|.+|+..
T Consensus       296 ~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~  328 (388)
T 3pe7_A          296 LMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMK  328 (388)
T ss_dssp             EEEEEECCC------------CCCCEEEEEETT
T ss_pred             eEccCCCcceeEeeeccccccCCCCEEEEEecc
Confidence            5764 6665532         456789998753

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.61  E-value=4.7e-14  Score=127.21  Aligned_cols=272  Identities=8%  Similarity=-0.040  Sum_probs=157.6

Q ss_pred             CCceeeccCC-CCCEEEEEecC---CeEEEEcCCCeEEEEeeccCCceE-EEEEeecCCCceEEEEEccCCCcEEEEecc
Q 036314           24 DDWVSAVDGS-NPGFILTGCYD---NLGRVWKAGGVCTHILEGHCGAVS-SVNIIKSDGLKYVTVATASKDQTLRLWKFD   98 (347)
Q Consensus        24 ~~~v~~~~~~-~~~~l~sg~~d---~~i~iw~~~~~~~~~l~~h~~~V~-~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~   98 (347)
                      ...+..++++ ++++|+..+.+   ..+.+|+..+.....+..+...+. .+.|+|++    ..|+..+.++.|.+||+.
T Consensus        35 ~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg----~~l~~~~~~~~l~~~d~~  110 (396)
T 3c5m_A           35 RNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDE----RAFFYVKNELNLMKVDLE  110 (396)
T ss_dssp             CCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTS----SEEEEEETTTEEEEEETT
T ss_pred             ceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCC----CEEEEEEcCCcEEEEECC
Confidence            3447788888 45677766443   367778876544444544444333 37788854    368888888899999987


Q ss_pred             ccccccCccccceeeeeeccccceEE-------------------EEEeCCCCEEEEe-----eCCCcEEEEecCCCCCC
Q 036314           99 AEELVNHPKKIRSFKILRGHKASVHS-------------------IAAETSGNMVCSG-----SWDCTISLWRTNDSDAA  154 (347)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~h~~~V~~-------------------v~~s~~~~~l~sg-----s~Dg~I~iwd~~~~~~~  154 (347)
                      +++..         ..+..+......                   +.++|+++.++..     ..+..|.+||+.++.. 
T Consensus       111 ~~~~~---------~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~-  180 (396)
T 3c5m_A          111 TLEEQ---------VIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGEL-  180 (396)
T ss_dssp             TCCEE---------EEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCE-
T ss_pred             CCCcE---------EEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcE-
Confidence            65421         112222221111                   2456677665543     3566788887764321 


Q ss_pred             CccceeeeccCCCccccccccccccccccCCccceEEEEe-C-CCCeEEEEecC------CcEEEEECCCCceeeeeee-
Q 036314          155 GNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW-P-QQETIYSASWD------HSVRTWDVEMGKDLSDIFC-  225 (347)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~-~~~~l~s~s~d------g~v~vwd~~~~~~~~~~~~-  225 (347)
                                               ..+..+...+..+.| | +++.|+..+.+      ..|.+||+..+.. ..+.. 
T Consensus       181 -------------------------~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~  234 (396)
T 3c5m_A          181 -------------------------EVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNV-RKIKEH  234 (396)
T ss_dssp             -------------------------EEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCC-EESSCC
T ss_pred             -------------------------EeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCce-eEeecc
Confidence                                     111223445667777 4 46666665543      3588888865542 22222 


Q ss_pred             --CeeeEEEEeeCCCCcEEEEecCC----CcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCC-CCCeEEEEEe------
Q 036314          226 --GKALNCIDIGGEGSALIAAGGSD----PILRIWDPRKPGTSAPVFQFSSHNSWISACKWHN-KSWFHLISAS------  292 (347)
Q Consensus       226 --~~~~~~~~~~~~~~~~la~~~~d----~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~-~~~~~l~s~s------  292 (347)
                        ...+..+.|+|++..++.++..+    +.|++||+....    ...+..... .. +.|+| ++. +|+.++      
T Consensus       235 ~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~----~~~l~~~~~-~~-~~~s~~dg~-~l~~~~~~~p~~  307 (396)
T 3c5m_A          235 AEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLE----NEEVMVMPP-CS-HLMSNFDGS-LMVGDGCDAPVD  307 (396)
T ss_dssp             CTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCC----EEEEEECCS-EE-EEEECSSSS-EEEEEECCC---
T ss_pred             CCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCC----eEEeeeCCC-CC-CCccCCCCc-eEEEecCCccee
Confidence              22466778887765554443221    449999986432    122221112 23 88999 887 466544      


Q ss_pred             ----------CCCcEEEEEcCCCccceeecCCCC-----------eEEEEeecC-CCEEEEcc-CCceEEEeec
Q 036314          293 ----------YDGKVMLWDLRTAWPLSVIDSHKD-----------KVLCADWWR-GDSVISGG-VDSKLCVSSG  343 (347)
Q Consensus       293 ----------~D~~i~lwd~~~~~~~~~~~~h~~-----------~v~~~~~~~-~~~l~s~s-~D~~v~vw~~  343 (347)
                                .+..|.+||+.+++. ..+..|..           .+..+.|++ |++|+.++ .++...||..
T Consensus       308 ~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~  380 (396)
T 3c5m_A          308 VADADSYNIENDPFLYVLNTKAKSA-QKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIA  380 (396)
T ss_dssp             -------CCCCCCEEEEEETTTTBC-CEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred             eccccccccCCCCcEEEEecccCce-EEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEE
Confidence                      347899999987764 44555544           245678875 66766555 4666667653

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.60  E-value=7.6e-14  Score=134.89  Aligned_cols=241  Identities=10%  Similarity=0.045  Sum_probs=151.8

Q ss_pred             EeeccCCceEEEEEeecCCCceEEEEEc--cCCCcEEEEeccccccccCccccceeeeeeccccceE---------EEEE
Q 036314           59 ILEGHCGAVSSVNIIKSDGLKYVTVATA--SKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVH---------SIAA  127 (347)
Q Consensus        59 ~l~~h~~~V~~v~~~~~~~~~~~~l~s~--s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~---------~v~~  127 (347)
                      .+.+|...|..++|++    +...+++.  +.+++.+||.+..+.         ....+..|...+.         ..+|
T Consensus        18 ~~~~~~~~~~~~~~s~----~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~l~~~~~~~~~~~~~~~~~~~~~   84 (662)
T 3azo_A           18 LVASRSGRPACVGAVG----DEVWWVAPRPAEAGRATLVRRRADG---------AEESALPAPWNVRNRVFEYSGFPWAG   84 (662)
T ss_dssp             HHHHTCSCCEEEEEET----TEEEEEEEETTTTTEEEEEEECTTS---------CEEESSCTTCCBCCCGGGTCCCCEEE
T ss_pred             HHhhcCCccceeEEcC----CeEEEEecCcccCCcEEEEEECCCC---------CcceeCCCCccccccccccCCcccee
Confidence            4667889999999986    33455666  678899999863221         1233445555555         5555


Q ss_pred             e--CCCCE-EEEee-CCCcEEEEecC--C-CCCCCccceeeeccCCCccccccccccccccccC-----CccceEEEEe-
Q 036314          128 E--TSGNM-VCSGS-WDCTISLWRTN--D-SDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVG-----HTQCVSSVVW-  194 (347)
Q Consensus       128 s--~~~~~-l~sgs-~Dg~I~iwd~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----h~~~v~~~~~-  194 (347)
                      +  |||+. |+.++ .+..|.++++.  . ..                          ...+..     |...+..++| 
T Consensus        85 ~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~--------------------------~~~l~~~~~~~~~~~~~~~~~s  138 (662)
T 3azo_A           85 VPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV--------------------------PRPLTPVSAVGGGLRWADPVLL  138 (662)
T ss_dssp             ECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC--------------------------CEECSCCCCSTTCEEEEEEEEE
T ss_pred             eeecCCCeEEEEEECCCCeEEEEcCCCCCCCC--------------------------CEeccCCccCCCCccccCcEEC
Confidence            5  99988 66444 35556666543  1 11                          112222     4556777888 


Q ss_pred             CCCCeEEEEecC----------CcEEEEECCC------Cceeeeee-e-CeeeEEEEeeCCCCcEEEEecCC--------
Q 036314          195 PQQETIYSASWD----------HSVRTWDVEM------GKDLSDIF-C-GKALNCIDIGGEGSALIAAGGSD--------  248 (347)
Q Consensus       195 ~~~~~l~s~s~d----------g~v~vwd~~~------~~~~~~~~-~-~~~~~~~~~~~~~~~~la~~~~d--------  248 (347)
                      |+++.|++++.|          ..|.+||+.+      +.. ..+. . ...+..+.++|++. .|+..+.+        
T Consensus       139 pDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~-~la~~~~~~~~~~~~~  216 (662)
T 3azo_A          139 PERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDGR-QAVWLAWDHPRMPWEG  216 (662)
T ss_dssp             TTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGS-EESSCSCSSEECCCEECTTSS-EEEEEEECTTCCTTTC
T ss_pred             CCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCce-eEEEecCCCcccCceECCCCC-EEEEEECCCCCCCCCC
Confidence            688899988877          5899999987      443 3333 2 33455677876654 55554433        


Q ss_pred             CcEEEEeCCCCCCC-CCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCC--cEEEEEcCCCccceeecCCCCe--------
Q 036314          249 PILRIWDPRKPGTS-APVFQFSSHNSWISACKWHNKSWFHLISASYDG--KVMLWDLRTAWPLSVIDSHKDK--------  317 (347)
Q Consensus       249 ~~i~iwd~~~~~~~-~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~--~i~lwd~~~~~~~~~~~~h~~~--------  317 (347)
                      ..|++||+...+.. .......+|...+..+.|+||+. ++++++.|+  .|.+||+.+++.......+.+.        
T Consensus       217 ~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~-l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~  295 (662)
T 3azo_A          217 TELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGS-LIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPG  295 (662)
T ss_dssp             EEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSC-EEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTT
T ss_pred             cEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCe-EEEEECCCCCeEEEEEECCCCceeecccccccccCcccccc
Confidence            47999998732210 12223345577899999999997 788888888  4555566555543333333222        


Q ss_pred             EEEEeecC-CCEEEEccCCceEEEee
Q 036314          318 VLCADWWR-GDSVISGGVDSKLCVSS  342 (347)
Q Consensus       318 v~~~~~~~-~~~l~s~s~D~~v~vw~  342 (347)
                      +.+++|++ +..+++++. ++++||.
T Consensus       296 ~~~~~~~~~~~~~~~~~~-~~~~l~~  320 (662)
T 3azo_A          296 MRWFAPLANGLIAVVHGK-GAAVLGI  320 (662)
T ss_dssp             CCSEEECTTSCEEEEEBS-SSCEEEE
T ss_pred             CceEeEeCCCEEEEEEEc-CccEEEE
Confidence            45677875 567788888 9999994

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.60  E-value=2.6e-13  Score=132.06  Aligned_cols=270  Identities=9%  Similarity=-0.010  Sum_probs=166.7

Q ss_pred             CCCEEEEEecCC---eEEEEcC---CCeEEEEee------ccCCceEEEEEeecCCCceEEEE-----EccCCCcEEEEe
Q 036314           34 NPGFILTGCYDN---LGRVWKA---GGVCTHILE------GHCGAVSSVNIIKSDGLKYVTVA-----TASKDQTLRLWK   96 (347)
Q Consensus        34 ~~~~l~sg~~d~---~i~iw~~---~~~~~~~l~------~h~~~V~~v~~~~~~~~~~~~l~-----s~s~Dg~v~~wd   96 (347)
                      +|++++....++   ...+|..   .+.....+.      +|...+.+++|+|++.    .||     +|+.+.+|++||
T Consensus        78 dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~----~la~~~~~~G~~~~~i~v~d  153 (695)
T 2bkl_A           78 RNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGK----KVAFAQKPNAADEAVLHVID  153 (695)
T ss_dssp             ETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSS----EEEEEEEETTCSCCEEEEEE
T ss_pred             ECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCC----EEEEEECCCCCceEEEEEEE
Confidence            466666665544   4566642   233333332      4555788999998543    566     666678999999


Q ss_pred             ccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCc-------------EEEEecCCCCCCCccceeeec
Q 036314           97 FDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCT-------------ISLWRTNDSDAAGNQVSIKKR  163 (347)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~-------------I~iwd~~~~~~~~~~~~~~~~  163 (347)
                      +.+++...       ...+....  ...++|+|||+.|+.++.|..             |++|++.++...         
T Consensus       154 l~tg~~~~-------~~~~~~~~--~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~---------  215 (695)
T 2bkl_A          154 VDSGEWSK-------VDVIEGGK--YATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSK---------  215 (695)
T ss_dssp             TTTCCBCS-------SCCBSCCT--TCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGG---------
T ss_pred             CCCCCCcC-------CcccCccc--ccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchh---------
Confidence            98876420       00111111  156899999999999998877             999998754211         


Q ss_pred             cCCCccccccccccccccccCCccceEEEEe-CCCCeEEEEecCC----cEEEEECCCCceeeeeee-CeeeEEEEeeCC
Q 036314          164 KGNNQVEEPQLEGEAISTLVGHTQCVSSVVW-PQQETIYSASWDH----SVRTWDVEMGKDLSDIFC-GKALNCIDIGGE  237 (347)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~l~s~s~dg----~v~vwd~~~~~~~~~~~~-~~~~~~~~~~~~  237 (347)
                                  ...+.....|...+..+.| +++++|+.++.++    .|.+||..++. ...+.. ........+ ++
T Consensus       216 ------------~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~-~~~l~~~~~~~~~~~~-~~  281 (695)
T 2bkl_A          216 ------------DTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKD-FRLLVKGVGAKYEVHA-WK  281 (695)
T ss_dssp             ------------CEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSS-CEEEEECSSCCEEEEE-ET
T ss_pred             ------------ceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCc-eEEeecCCCceEEEEe-cC
Confidence                        0112223345556777777 5788887777666    56677665543 333332 223333333 45


Q ss_pred             CCcEEEEec---CCCcEEEEeCCCCCCCCCeEEecCC--CCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcC-CCccceee
Q 036314          238 GSALIAAGG---SDPILRIWDPRKPGTSAPVFQFSSH--NSWISACKWHNKSWFHLISASYDGKVMLWDLR-TAWPLSVI  311 (347)
Q Consensus       238 ~~~~la~~~---~d~~i~iwd~~~~~~~~~~~~~~~h--~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~-~~~~~~~~  311 (347)
                      +. +++.+.   .++.|.+||+..+.. .....+-.|  ...+..+.|+ + ..++++...|+..+||.++ ++.....+
T Consensus       282 g~-l~~~s~~~~~~~~l~~~d~~~~~~-~~~~~l~~~~~~~~l~~~~~~-~-~~lv~~~~~dg~~~l~~~~~~g~~~~~l  357 (695)
T 2bkl_A          282 DR-FYVLTDEGAPRQRVFEVDPAKPAR-ASWKEIVPEDSSASLLSVSIV-G-GHLSLEYLKDATSEVRVATLKGKPVRTV  357 (695)
T ss_dssp             TE-EEEEECTTCTTCEEEEEBTTBCSG-GGCEEEECCCSSCEEEEEEEE-T-TEEEEEEEETTEEEEEEEETTCCEEEEC
T ss_pred             Cc-EEEEECCCCCCCEEEEEeCCCCCc-cCCeEEecCCCCCeEEEEEEE-C-CEEEEEEEECCEEEEEEEeCCCCeeEEe
Confidence            55 555544   358999999864321 112333333  4457788887 3 3678999999998888665 35545555


Q ss_pred             cCC-CCeEEEEeecC-CCEEE----EccCCceEEEeec
Q 036314          312 DSH-KDKVLCADWWR-GDSVI----SGGVDSKLCVSSG  343 (347)
Q Consensus       312 ~~h-~~~v~~~~~~~-~~~l~----s~s~D~~v~vw~~  343 (347)
                      ..+ .+.+..+.+++ ++.|+    +...+++|.+|+.
T Consensus       358 ~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~  395 (695)
T 2bkl_A          358 QLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSV  395 (695)
T ss_dssp             CCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEET
T ss_pred             cCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEEC
Confidence            544 66777888875 55655    5556788999974

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.60  E-value=2.1e-13  Score=120.70  Aligned_cols=263  Identities=8%  Similarity=-0.104  Sum_probs=142.0

Q ss_pred             ceeeccCCC-CCE-EEEEecCCeEEEEcCC-CeEEEEeec-c-----CCceEEEEEeecCCCceEEEEEccCC-------
Q 036314           26 WVSAVDGSN-PGF-ILTGCYDNLGRVWKAG-GVCTHILEG-H-----CGAVSSVNIIKSDGLKYVTVATASKD-------   89 (347)
Q Consensus        26 ~v~~~~~~~-~~~-l~sg~~d~~i~iw~~~-~~~~~~l~~-h-----~~~V~~v~~~~~~~~~~~~l~s~s~D-------   89 (347)
                      .+..+++++ +++ +++++.+++|++||.. +..+..+.. +     ...+..++|+|++.    .|++++.+       
T Consensus        44 ~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~----~l~~~~~~~~~~~~~  119 (349)
T 1jmx_B           44 GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGK----EVYATVNPTQRLNDH  119 (349)
T ss_dssp             SSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSS----EEEEEEEEEEECSSC
T ss_pred             CCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCC----EEEEEcccccccccc
Confidence            456677774 554 5566678999999975 555555542 2     23367889998543    57777755       


Q ss_pred             -----CcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeecc
Q 036314           90 -----QTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRK  164 (347)
Q Consensus        90 -----g~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~  164 (347)
                           ++|.+||+.+++...      .+..+. +...+.+++|+|+|+ ++.++.  .|++||+.+......    ....
T Consensus       120 ~~~~~~~i~~~d~~~~~~~~------~~~~~~-~~~~~~~~~~s~dg~-l~~~~~--~i~~~d~~~~~~~~~----~~~~  185 (349)
T 1jmx_B          120 YVVKPPRLEVFSTADGLEAK------PVRTFP-MPRQVYLMRAADDGS-LYVAGP--DIYKMDVKTGKYTVA----LPLR  185 (349)
T ss_dssp             EEECCCEEEEEEGGGGGGBC------CSEEEE-CCSSCCCEEECTTSC-EEEESS--SEEEECTTTCCEEEE----ECST
T ss_pred             cccCCCeEEEEECCCccccc------eeeecc-CCCcccceeECCCCc-EEEccC--cEEEEeCCCCceecc----cccc
Confidence                 899999998754321      222333 334588899999999 555544  499999876532110    0000


Q ss_pred             CCCccccccccccccccccCCcc---ceEEEEeC-CCCeE-EEEecCCcEEEEECCCCceeeeee---eCeeeEEEEeeC
Q 036314          165 GNNQVEEPQLEGEAISTLVGHTQ---CVSSVVWP-QQETI-YSASWDHSVRTWDVEMGKDLSDIF---CGKALNCIDIGG  236 (347)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~h~~---~v~~~~~~-~~~~l-~s~s~dg~v~vwd~~~~~~~~~~~---~~~~~~~~~~~~  236 (347)
                      ..........+............   ....+.+. ++... ........+..+|..+++. ..+.   ....+..+.+++
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~sp  264 (349)
T 1jmx_B          186 NWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKT-HTQEFADLTELYFTGLRSP  264 (349)
T ss_dssp             TCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCE-EEEEEEECSSCEEEEEECS
T ss_pred             ccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcE-EecccccCCCcceeeEecC
Confidence            00000000000000000000000   11223332 11000 0000111122244444331 1111   223456778877


Q ss_pred             CCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecCC
Q 036314          237 EGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSH  314 (347)
Q Consensus       237 ~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h  314 (347)
                      .++..++++  ++.|.+||+...   .....+. ....+.+++|+|++.+ |++++.++.|++||+++++.+..+..+
T Consensus       265 ~dg~~l~~~--~~~v~~~d~~~~---~~~~~~~-~~~~~~~~~~s~dg~~-l~~~~~~~~v~v~d~~~~~~~~~~~~~  335 (349)
T 1jmx_B          265 KDPNQIYGV--LNRLAKYDLKQR---KLIKAAN-LDHTYYCVAFDKKGDK-LYLGGTFNDLAVFNPDTLEKVKNIKLP  335 (349)
T ss_dssp             SCTTEEEEE--ESEEEEEETTTT---EEEEEEE-CSSCCCEEEECSSSSC-EEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred             CCCCEEEEE--cCeEEEEECccC---eEEEEEc-CCCCccceEECCCCCE-EEEecCCCeEEEEeccccceeeeeecC
Confidence            234456655  889999998742   2233443 2345778999999876 566788899999999988877766543

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.59  E-value=1.9e-12  Score=126.21  Aligned_cols=251  Identities=10%  Similarity=-0.045  Sum_probs=157.3

Q ss_pred             CcCCceeeccCC-CCCEEEEEecCC-----eEEEEcCC-CeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCc---
Q 036314           22 LHDDWVSAVDGS-NPGFILTGCYDN-----LGRVWKAG-GVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQT---   91 (347)
Q Consensus        22 ~h~~~v~~~~~~-~~~~l~sg~~d~-----~i~iw~~~-~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~---   91 (347)
                      +|+..+..+++| ++++||.++.++     +|++||+. +..+.....+ ..+..++|+|++.    .|+.++.|+.   
T Consensus       122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~----~l~~~~~~~~~~~  196 (710)
T 2xdw_A          122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGK----GMFYNAYPQQDGK  196 (710)
T ss_dssp             TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSS----EEEEEECCCCSSC
T ss_pred             CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCC----EEEEEEECCcccc
Confidence            455568888888 456787665543     89999985 4444322222 2367899999543    5777777765   


Q ss_pred             -------------EEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeC-----CCcEEEEecCCCCC
Q 036314           92 -------------LRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSW-----DCTISLWRTNDSDA  153 (347)
Q Consensus        92 -------------v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~-----Dg~I~iwd~~~~~~  153 (347)
                                   |++|++.+++..     ...+.....|...+..+.|+|||++|+..+.     +..|.+||+.+...
T Consensus       197 ~~~~~~~~~~~~~v~~~~l~t~~~~-----~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~  271 (710)
T 2xdw_A          197 SDGTETSTNLHQKLYYHVLGTDQSE-----DILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESN  271 (710)
T ss_dssp             CSSSCCCCCCCCEEEEEETTSCGGG-----CEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSS
T ss_pred             ccccccccCCCCEEEEEECCCCccc-----ceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECccccc
Confidence                         999998765310     0122122235566788999999998887654     66899998764100


Q ss_pred             --CCccceeeeccCCCccccccccccccccccCCccceEEEEeCCCCeEEEEecCC----cEEEEECCCCce--eeeeee
Q 036314          154 --AGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWPQQETIYSASWDH----SVRTWDVEMGKD--LSDIFC  225 (347)
Q Consensus       154 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~dg----~v~vwd~~~~~~--~~~~~~  225 (347)
                        .+.                    .....+..+...+.....++++.|+..+.++    .|.+||+.++..  ...+..
T Consensus       272 ~~~~~--------------------~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~  331 (710)
T 2xdw_A          272 GITGI--------------------LKWVKLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVP  331 (710)
T ss_dssp             SSCSS--------------------CCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEEC
T ss_pred             ccCCc--------------------cceEEeeCCCCcEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccC
Confidence              000                    0122333344444444446777776555433    589999987642  233332


Q ss_pred             C-e--eeEEEEeeCCCCcEEEEecCCCc--EEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEe---CCCcE
Q 036314          226 G-K--ALNCIDIGGEGSALIAAGGSDPI--LRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISAS---YDGKV  297 (347)
Q Consensus       226 ~-~--~~~~~~~~~~~~~~la~~~~d~~--i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s---~D~~i  297 (347)
                      . .  .+..+.+. +++.++++...|+.  |.+||+...   .....+..+...+..+.++|++..++++.+   ..++|
T Consensus       332 ~~~~~~~~~~~~~-~~~~lv~~~~~~g~~~l~~~~~~~g---~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i  407 (710)
T 2xdw_A          332 EHEKDVLEWVACV-RSNFLVLCYLHDVKNTLQLHDLATG---ALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGII  407 (710)
T ss_dssp             CCSSCEEEEEEEE-TTTEEEEEEEETTEEEEEEEETTTC---CEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEE
T ss_pred             CCCCCeEEEEEEE-cCCEEEEEEEECCEEEEEEEECCCC---CEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEE
Confidence            2 2  45667775 45667888877875  556676432   234566777778889999998876555544   34789


Q ss_pred             EEEEcCCCc
Q 036314          298 MLWDLRTAW  306 (347)
Q Consensus       298 ~lwd~~~~~  306 (347)
                      .+||+.+++
T Consensus       408 ~~~d~~tg~  416 (710)
T 2xdw_A          408 YHCDLTKEE  416 (710)
T ss_dssp             EEEETTSSS
T ss_pred             EEEECCCCc
Confidence            999998876

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.56  E-value=7.7e-14  Score=135.75  Aligned_cols=244  Identities=10%  Similarity=-0.072  Sum_probs=153.3

Q ss_pred             CcCCceeeccCC-CCCEEE-----EEecCCeEEEEcCCCeEEEEeeccCCce--EEEEEeecCCCceEEEEEccCCCc--
Q 036314           22 LHDDWVSAVDGS-NPGFIL-----TGCYDNLGRVWKAGGVCTHILEGHCGAV--SSVNIIKSDGLKYVTVATASKDQT--   91 (347)
Q Consensus        22 ~h~~~v~~~~~~-~~~~l~-----sg~~d~~i~iw~~~~~~~~~l~~h~~~V--~~v~~~~~~~~~~~~l~s~s~Dg~--   91 (347)
                      +|+..+..+++| ++++||     +|+.+.+|++||+.+..... ..+...+  ..++|+|++    ..|+.++.|..  
T Consensus       118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~-~~~~~~~~~~~~~wspDg----~~l~~~~~d~~~~  192 (695)
T 2bkl_A          118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK-VDVIEGGKYATPKWTPDS----KGFYYEWLPTDPS  192 (695)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS-SCCBSCCTTCCCEECTTS----SEEEEEECCCCTT
T ss_pred             CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC-CcccCcccccceEEecCC----CEEEEEEecCCCC
Confidence            566678889998 456777     45556799999986432110 2222223  678999854    35777888776  


Q ss_pred             -----------EEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCC----cEEEEecCCCCCCCc
Q 036314           92 -----------LRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDC----TISLWRTNDSDAAGN  156 (347)
Q Consensus        92 -----------v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg----~I~iwd~~~~~~~~~  156 (347)
                                 |++|++.+++..     .+.+.....|...+.++.|+|||++|+.++.++    .|.+|+..+.     
T Consensus       193 ~~~~~~~~~~~v~~~~l~t~~~~-----~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~-----  262 (695)
T 2bkl_A          193 IKVDERPGYTTIRYHTLGTEPSK-----DTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEK-----  262 (695)
T ss_dssp             SCGGGGGGGCEEEEEETTSCGGG-----CEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCS-----
T ss_pred             CccccCCCCCEEEEEECCCCchh-----ceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCC-----
Confidence                       999999765311     112223344666788999999999888777665    4555543221     


Q ss_pred             cceeeeccCCCccccccccccccccccCCccceEEEEeCCCCeEEEEec----CCcEEEEECCCCce--eeeeee---Ce
Q 036314          157 QVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWPQQETIYSASW----DHSVRTWDVEMGKD--LSDIFC---GK  227 (347)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~----dg~v~vwd~~~~~~--~~~~~~---~~  227 (347)
                                           ....+..+...+....+++++ ++..+.    ++.|.+||+.++..  ...+..   ..
T Consensus       263 ---------------------~~~~l~~~~~~~~~~~~~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~  320 (695)
T 2bkl_A          263 ---------------------DFRLLVKGVGAKYEVHAWKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSA  320 (695)
T ss_dssp             ---------------------SCEEEEECSSCCEEEEEETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSC
T ss_pred             ---------------------ceEEeecCCCceEEEEecCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCC
Confidence                                 112233333444555566666 544443    57899999977643  233332   22


Q ss_pred             eeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCC-CCCeeEEEeCCCCCeEEEEEe---CCCcEEEEEcC
Q 036314          228 ALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSH-NSWISACKWHNKSWFHLISAS---YDGKVMLWDLR  303 (347)
Q Consensus       228 ~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h-~~~v~~v~~s~~~~~~l~s~s---~D~~i~lwd~~  303 (347)
                      .+..+++.  ++.++++...|+..+||.+...+.  ....+..+ ...+..+.++|++..++++.+   ..++|.+||+.
T Consensus       321 ~l~~~~~~--~~~lv~~~~~dg~~~l~~~~~~g~--~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~  396 (695)
T 2bkl_A          321 SLLSVSIV--GGHLSLEYLKDATSEVRVATLKGK--PVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVS  396 (695)
T ss_dssp             EEEEEEEE--TTEEEEEEEETTEEEEEEEETTCC--EEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETT
T ss_pred             eEEEEEEE--CCEEEEEEEECCEEEEEEEeCCCC--eeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECC
Confidence            45666665  456888888899888886542121  23445544 567888889998876554443   34789999998


Q ss_pred             CCc
Q 036314          304 TAW  306 (347)
Q Consensus       304 ~~~  306 (347)
                      +++
T Consensus       397 ~g~  399 (695)
T 2bkl_A          397 TGK  399 (695)
T ss_dssp             TCC
T ss_pred             CCc
Confidence            875

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.55  E-value=2.7e-12  Score=111.34  Aligned_cols=240  Identities=10%  Similarity=0.048  Sum_probs=153.0

Q ss_pred             EEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEEEE
Q 036314           57 THILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCS  136 (347)
Q Consensus        57 ~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~s  136 (347)
                      ...+..+.....+++|.++++   ..++++..++.|..|+..++           ...+..+...+.+++++++|+++++
T Consensus        20 ~~~l~~~~~~~eg~~~d~~g~---~l~~~~~~~~~i~~~~~~~~-----------~~~~~~~~~~~~~l~~~~dg~l~v~   85 (296)
T 3e5z_A           20 ARRLADGFTWTEGPVYVPARS---AVIFSDVRQNRTWAWSDDGQ-----------LSPEMHPSHHQNGHCLNKQGHLIAC   85 (296)
T ss_dssp             CEEEECCCSSEEEEEEEGGGT---EEEEEEGGGTEEEEEETTSC-----------EEEEESSCSSEEEEEECTTCCEEEE
T ss_pred             EEEEecCCccccCCeEeCCCC---EEEEEeCCCCEEEEEECCCC-----------eEEEECCCCCcceeeECCCCcEEEE
Confidence            344555666678899998543   25788889999999998653           2334556777899999999998888


Q ss_pred             eeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccC-CccceEEEEe-CCCCeEEE----Eec-----
Q 036314          137 GSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVG-HTQCVSSVVW-PQQETIYS----ASW-----  205 (347)
Q Consensus       137 gs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~-~~~~~l~s----~s~-----  205 (347)
                      ...++.|.+||..++...    ..                  .....+ ....+..+++ +++..+++    ++.     
T Consensus        86 ~~~~~~i~~~d~~~g~~~----~~------------------~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~  143 (296)
T 3e5z_A           86 SHGLRRLERQREPGGEWE----SI------------------ADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEG  143 (296)
T ss_dssp             ETTTTEEEEECSTTCCEE----EE------------------ECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGS
T ss_pred             ecCCCeEEEEcCCCCcEE----EE------------------eeccCCCCCCCCCCEEECCCCCEEEECCcccccccccc
Confidence            777899999997554210    00                  000000 0112345666 46666665    321     


Q ss_pred             --------CCcEEEEECCCCceeeeee-eCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCC-CCeEEecCCCCCe
Q 036314          206 --------DHSVRTWDVEMGKDLSDIF-CGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTS-APVFQFSSHNSWI  275 (347)
Q Consensus       206 --------dg~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~-~~~~~~~~h~~~v  275 (347)
                              .+.|..+|.. ++ +..+. .......+++++++.. +++.+.++.|.+||+...+.. .....+..+...+
T Consensus       144 ~~~~~~~~~~~l~~~~~~-g~-~~~~~~~~~~~~gi~~s~dg~~-lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p  220 (296)
T 3e5z_A          144 YGGEMELPGRWVFRLAPD-GT-LSAPIRDRVKPNGLAFLPSGNL-LVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKT  220 (296)
T ss_dssp             SCCCCCSSSCEEEEECTT-SC-EEEEECCCSSEEEEEECTTSCE-EEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCC
T ss_pred             ccccccCCCcEEEEECCC-CC-EEEeecCCCCCccEEECCCCCE-EEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCC
Confidence                    2345555544 33 22222 2234577888776554 477888899999998632221 1122333455567


Q ss_pred             eEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecCCCCeEEEEee-cC-CCEEEEccCCceEEE
Q 036314          276 SACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKVLCADW-WR-GDSVISGGVDSKLCV  340 (347)
Q Consensus       276 ~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h~~~v~~~~~-~~-~~~l~s~s~D~~v~v  340 (347)
                      ..++++++|. +.++.  ++.|.+||.+ ++.+..+..+.. +.+++| .+ ++.|..++.++..++
T Consensus       221 ~~i~~d~~G~-l~v~~--~~~v~~~~~~-g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~l~~~  282 (296)
T 3e5z_A          221 DGLRVDAGGL-IWASA--GDGVHVLTPD-GDELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTEFWSI  282 (296)
T ss_dssp             CSEEEBTTSC-EEEEE--TTEEEEECTT-SCEEEEEECSSC-CCEEEEESTTSCEEEEEETTEEEEE
T ss_pred             CeEEECCCCC-EEEEc--CCeEEEECCC-CCEEEEEECCCC-ceeEEEECCCCCEEEEEcCCeEEEE
Confidence            7899999985 34443  8899999997 667777777777 899999 44 556777777765544

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.55  E-value=2.8e-12  Score=125.08  Aligned_cols=244  Identities=10%  Similarity=0.038  Sum_probs=152.8

Q ss_pred             cCCceEEEEEeecCCCceEEEEEccCCC-----cEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEe
Q 036314           63 HCGAVSSVNIIKSDGLKYVTVATASKDQ-----TLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSG  137 (347)
Q Consensus        63 h~~~V~~v~~~~~~~~~~~~l~s~s~Dg-----~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sg  137 (347)
                      |...+..++|+|++.    .||.++.++     +|++||+.+++...        .++..  ..+.+++|+|||+.|+.+
T Consensus       123 ~~~~~~~~~~SPDg~----~la~~~~~~G~~~~~i~v~d~~tg~~~~--------~~~~~--~~~~~~~wspDg~~l~~~  188 (710)
T 2xdw_A          123 GTVALRGYAFSEDGE----YFAYGLSASGSDWVTIKFMKVDGAKELP--------DVLER--VKFSCMAWTHDGKGMFYN  188 (710)
T ss_dssp             SCEEEEEEEECTTSS----EEEEEEEETTCSCEEEEEEETTTTEEEE--------EEEEE--ECSCCEEECTTSSEEEEE
T ss_pred             CCEEEEEEEECCCCC----EEEEEEcCCCCceEEEEEEECCCCCCCc--------ccccC--cccceEEEEeCCCEEEEE
Confidence            444688899998543    455444332     89999998875321        11222  225678999999999988


Q ss_pred             eCCCc----------------EEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEe-CCCCeE
Q 036314          138 SWDCT----------------ISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW-PQQETI  200 (347)
Q Consensus       138 s~Dg~----------------I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~l  200 (347)
                      +.|+.                |++|++.++...                     ...+.....|...+..+.| +++++|
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~---------------------~~~v~~~~~~~~~~~~~~~SpDg~~l  247 (710)
T 2xdw_A          189 AYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSE---------------------DILCAEFPDEPKWMGGAELSDDGRYV  247 (710)
T ss_dssp             ECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGG---------------------CEEEECCTTCTTCEEEEEECTTSCEE
T ss_pred             EECCccccccccccccCCCCEEEEEECCCCccc---------------------ceEEeccCCCCeEEEEEEEcCCCCEE
Confidence            88876                899988653210                     0011122224455667777 577887


Q ss_pred             EEEec-----CCcEEEEECCC------Cc-eeeeeeeCeeeEEEEeeCCCCcEEEEecC---CCcEEEEeCCCCCCCCCe
Q 036314          201 YSASW-----DHSVRTWDVEM------GK-DLSDIFCGKALNCIDIGGEGSALIAAGGS---DPILRIWDPRKPGTSAPV  265 (347)
Q Consensus       201 ~s~s~-----dg~v~vwd~~~------~~-~~~~~~~~~~~~~~~~~~~~~~~la~~~~---d~~i~iwd~~~~~~~~~~  265 (347)
                      +.++.     +..|.+||+.+      +. ....+..........+.+++..+++.+..   ...|.+||+..+.. ...
T Consensus       248 ~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~-~~~  326 (710)
T 2xdw_A          248 LLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEE-SKW  326 (710)
T ss_dssp             EEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCG-GGC
T ss_pred             EEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCc-ccc
Confidence            76664     56899999976      42 23444332211122355555555555433   34799999875321 122


Q ss_pred             EEecCCCC--CeeEEEeCCCCCeEEEEEeCCCc--EEEEEcCCCccceeecCCCCeEEEEeecC-CCEEE----EccCCc
Q 036314          266 FQFSSHNS--WISACKWHNKSWFHLISASYDGK--VMLWDLRTAWPLSVIDSHKDKVLCADWWR-GDSVI----SGGVDS  336 (347)
Q Consensus       266 ~~~~~h~~--~v~~v~~s~~~~~~l~s~s~D~~--i~lwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~l~----s~s~D~  336 (347)
                      ..+..|..  .+..+.|++++ .++++...|+.  |.+||+.+++.+..+..+.+.+..+.+++ ++.|+    +....+
T Consensus       327 ~~l~~~~~~~~~~~~~~~~~~-~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~  405 (710)
T 2xdw_A          327 KVLVPEHEKDVLEWVACVRSN-FLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPG  405 (710)
T ss_dssp             EEEECCCSSCEEEEEEEETTT-EEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCC
T ss_pred             eeccCCCCCCeEEEEEEEcCC-EEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCC
Confidence            44545654  57888998654 67888888885  55667767776777777888888999975 55544    233467


Q ss_pred             eEEEeec
Q 036314          337 KLCVSSG  343 (347)
Q Consensus       337 ~v~vw~~  343 (347)
                      +|.+|+.
T Consensus       406 ~i~~~d~  412 (710)
T 2xdw_A          406 IIYHCDL  412 (710)
T ss_dssp             EEEEEET
T ss_pred             EEEEEEC
Confidence            8888874

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.52  E-value=4.1e-12  Score=113.71  Aligned_cols=257  Identities=9%  Similarity=0.030  Sum_probs=158.3

Q ss_pred             eccCC-CCCEEEEEe----------cCCeEEEEcCC-CeEEEEeecc------CCceEEEEEeecCCCceEEEEEccC--
Q 036314           29 AVDGS-NPGFILTGC----------YDNLGRVWKAG-GVCTHILEGH------CGAVSSVNIIKSDGLKYVTVATASK--   88 (347)
Q Consensus        29 ~~~~~-~~~~l~sg~----------~d~~i~iw~~~-~~~~~~l~~h------~~~V~~v~~~~~~~~~~~~l~s~s~--   88 (347)
                      .++++ ++++|.+++          .+++|.+||.. ++.+..+.-.      ......++|+|++.    +|+++..  
T Consensus        54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~----~l~v~n~~~  129 (361)
T 2oiz_A           54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGK----FIVLQNASP  129 (361)
T ss_dssp             EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSS----EEEEEEESS
T ss_pred             ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCC----EEEEECCCC
Confidence            67787 456777765          36789999975 4555555422      23456789988543    5666543  


Q ss_pred             CCcEEEEeccccccccCccccceeee-eeccccceEEEEEeCCC-CEEEEeeCCCcEEEEecCCCCCCCccceeeeccCC
Q 036314           89 DQTLRLWKFDAEELVNHPKKIRSFKI-LRGHKASVHSIAAETSG-NMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGN  166 (347)
Q Consensus        89 Dg~v~~wd~~~~~~~~~~~~~~~~~~-~~~h~~~V~~v~~s~~~-~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~  166 (347)
                      +++|.+||+.+++.         +.. +. + .....+.+.|++ ..+++.+.||++.+|+......   .......   
T Consensus       130 ~~~v~v~d~~~~~~---------~~~~i~-~-~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~---~~~~~~~---  192 (361)
T 2oiz_A          130 ATSIGIVDVAKGDY---------VEDVTA-A-AGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGK---VASQSRS---  192 (361)
T ss_dssp             SEEEEEEETTTTEE---------EEEEGG-G-TTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSS---EEEEEEC---
T ss_pred             CCeEEEEECCCCcE---------EEEEec-C-CCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCc---Eeeeccc---
Confidence            68999999987643         222 22 1 122335566765 6778899999999998754211   0000000   


Q ss_pred             CccccccccccccccccCCccceEEEEeCCCCeEEEEecCCcEEEEECCCCcee--eeeee-----------CeeeEEEE
Q 036314          167 NQVEEPQLEGEAISTLVGHTQCVSSVVWPQQETIYSASWDHSVRTWDVEMGKDL--SDIFC-----------GKALNCID  233 (347)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~--~~~~~-----------~~~~~~~~  233 (347)
                                  ...+..+..++....-+++..++..+.++.+.++|+......  ..+..           ......++
T Consensus       193 ------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a  260 (361)
T 2oiz_A          193 ------------KQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVG  260 (361)
T ss_dssp             ------------CCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEE
T ss_pred             ------------cceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEE
Confidence                        001111111111001134556666778899999998654321  11110           00111256


Q ss_pred             eeCCCCcEEEEec----------CCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcC
Q 036314          234 IGGEGSALIAAGG----------SDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLR  303 (347)
Q Consensus       234 ~~~~~~~~la~~~----------~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~  303 (347)
                      +++++..++++..          ..+.|.+||+...   +.+.++..+.  ...++|+|++. +|++++. ++|.+||.+
T Consensus       261 ~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~---~~v~~i~~~~--p~~ia~spdg~-~l~v~n~-~~v~v~D~~  333 (361)
T 2oiz_A          261 LHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTK---QRVARIPGRD--ALSMTIDQQRN-LMLTLDG-GNVNVYDIS  333 (361)
T ss_dssp             EETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTT---EEEEEEECTT--CCEEEEETTTT-EEEEECS-SCEEEEECS
T ss_pred             EecCCCeEEEEEccCCCcccccCCCceEEEEECCCC---cEEEEEecCC--eeEEEECCCCC-EEEEeCC-CeEEEEECC
Confidence            7777666655543          1358999998743   3466777776  89999999997 4776666 999999999


Q ss_pred             CC--ccceeecCCCCeEEEEeecC
Q 036314          304 TA--WPLSVIDSHKDKVLCADWWR  325 (347)
Q Consensus       304 ~~--~~~~~~~~h~~~v~~~~~~~  325 (347)
                      ++  +.++++..+....+.+.++|
T Consensus       334 t~~l~~~~~i~~~G~~P~~~~~~p  357 (361)
T 2oiz_A          334 QPEPKLLRTIEGAAEASLQVQFHP  357 (361)
T ss_dssp             SSSCEEEEEETTSCSSEEEEEECC
T ss_pred             CCcceeeEEeccCCCCcEEEEecC
Confidence            99  88888766667778888876

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.51  E-value=4.4e-11  Score=105.51  Aligned_cols=257  Identities=11%  Similarity=0.073  Sum_probs=160.3

Q ss_pred             CCeEEEEcCC-CeEEEEee----c--cCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeeee
Q 036314           44 DNLGRVWKAG-GVCTHILE----G--HCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILR  116 (347)
Q Consensus        44 d~~i~iw~~~-~~~~~~l~----~--h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~  116 (347)
                      +++|.++|.. ++....+.    +  .......+.+..  +   ...++...+++|.+||..+++.         +.++.
T Consensus        16 ~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~--~---~lyv~~~~~~~v~viD~~t~~~---------~~~i~   81 (328)
T 3dsm_A           16 NATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRD--G---IGWIVVNNSHVIFAIDINTFKE---------VGRIT   81 (328)
T ss_dssp             CBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEET--T---EEEEEEGGGTEEEEEETTTCCE---------EEEEE
T ss_pred             CceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEEC--C---EEEEEEcCCCEEEEEECcccEE---------EEEcC
Confidence            7899999986 44443321    1  112345676632  2   3456667789999999887653         23343


Q ss_pred             ccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEeCC
Q 036314          117 GHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWPQ  196 (347)
Q Consensus       117 ~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~  196 (347)
                       .......+++++++++.++...++.|.+||..+......      ..              .....++......+++ +
T Consensus        82 -~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~------i~--------------~g~~~~~~~~p~~i~~-~  139 (328)
T 3dsm_A           82 -GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGY------IE--------------CPDMDMESGSTEQMVQ-Y  139 (328)
T ss_dssp             -CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEE------EE--------------CTTCCTTTCBCCCEEE-E
T ss_pred             -CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEE------EE--------------cCCccccCCCcceEEE-E
Confidence             245678899989986555555899999999876421100      00              0000001112234444 4


Q ss_pred             CCeEEEEe--cCCcEEEEECCCCceeeeeeeCeeeEEEEeeCCCCcEEEEecCC----------CcEEEEeCCCCCCCCC
Q 036314          197 QETIYSAS--WDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEGSALIAAGGSD----------PILRIWDPRKPGTSAP  264 (347)
Q Consensus       197 ~~~l~s~s--~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~d----------~~i~iwd~~~~~~~~~  264 (347)
                      ++.|+.+.  .+++|.++|+++++.+..+........+.+.++ +.+++++..+          +.|.++|.....   .
T Consensus       140 ~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~~d-G~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~---v  215 (328)
T 3dsm_A          140 GKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQPTSLVMDKY-NKMWTITDGGYEGSPYGYEAPSLYRIDAETFT---V  215 (328)
T ss_dssp             TTEEEEEECTTCCEEEEEETTTTEEEEEEECSSCBCCCEECTT-SEEEEEBCCBCTTCSSCBCCCEEEEEETTTTE---E
T ss_pred             CCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCccceEEcCC-CCEEEEECCCccCCccccCCceEEEEECCCCe---E
Confidence            55665555  488999999999887777765555566777654 4566665544          789999986421   2


Q ss_pred             eEEecCC-CCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCcccee--ecCCCCeEEEEeecC--CCEEEEc----cCC
Q 036314          265 VFQFSSH-NSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSV--IDSHKDKVLCADWWR--GDSVISG----GVD  335 (347)
Q Consensus       265 ~~~~~~h-~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~--~~~h~~~v~~~~~~~--~~~l~s~----s~D  335 (347)
                      ...+.-. ......++|+|++.. |..+..  .|.+||..+++....  +..+.....++++.|  +..+++.    ..+
T Consensus       216 ~~~~~~~~g~~p~~la~~~d~~~-lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~  292 (328)
T 3dsm_A          216 EKQFKFKLGDWPSEVQLNGTRDT-LYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQ  292 (328)
T ss_dssp             EEEEECCTTCCCEEEEECTTSCE-EEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSE
T ss_pred             EEEEecCCCCCceeEEEecCCCE-EEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccC
Confidence            2233221 236789999998876 444433  899999988765321  222245678999975  4456776    678


Q ss_pred             ceEEEeec
Q 036314          336 SKLCVSSG  343 (347)
Q Consensus       336 ~~v~vw~~  343 (347)
                      ++|.+|+.
T Consensus       293 ~~V~v~d~  300 (328)
T 3dsm_A          293 GIVYRYSP  300 (328)
T ss_dssp             EEEEEECT
T ss_pred             CEEEEECC
Confidence            99999974

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.48  E-value=6e-10  Score=96.05  Aligned_cols=272  Identities=10%  Similarity=-0.031  Sum_probs=169.6

Q ss_pred             cCCceeeccCC-CCCEEEEEecCCeEEEEcCCCeEEEE-eeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEecccc
Q 036314           23 HDDWVSAVDGS-NPGFILTGCYDNLGRVWKAGGVCTHI-LEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAE  100 (347)
Q Consensus        23 h~~~v~~~~~~-~~~~l~sg~~d~~i~iw~~~~~~~~~-l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~  100 (347)
                      +...+.+++.. ++.+.++...++.|..||..+..... +..+...+.++++.+++    ...++...++.|..|+.+ +
T Consensus        13 ~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~i~~~~~g----~l~v~~~~~~~i~~~~~~-g   87 (299)
T 2z2n_A           13 QDTGPYGITVSDKGKVWITQHKANMISCINLDGKITEYPLPTPDAKVMCLTISSDG----EVWFTENAANKIGRITKK-G   87 (299)
T ss_dssp             SSCCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECTTS----CEEEEETTTTEEEEECTT-S
T ss_pred             cCCCccceEECCCCCEEEEecCCCcEEEEcCCCCeEEecCCcccCceeeEEECCCC----CEEEeCCCCCeEEEECCC-C
Confidence            34678888876 45566666567899999977544332 23345678889887743    245666667889999875 2


Q ss_pred             ccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccc
Q 036314          101 ELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAIS  180 (347)
Q Consensus       101 ~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (347)
                      +.       +.+ .+..+...+.+++++++|+++++...++.|.+||. ++...                        ..
T Consensus        88 ~~-------~~~-~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~------------------------~~  134 (299)
T 2z2n_A           88 II-------KEY-TLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIR------------------------EY  134 (299)
T ss_dssp             CE-------EEE-ECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEE------------------------EE
T ss_pred             cE-------EEE-eCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEE------------------------Ee
Confidence            21       111 12224556889999999998888878889999986 32110                        00


Q ss_pred             cccCCccceEEEEeC-CCCeEEEEecCCcEEEEECCCCceeee-ee-eCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCC
Q 036314          181 TLVGHTQCVSSVVWP-QQETIYSASWDHSVRTWDVEMGKDLSD-IF-CGKALNCIDIGGEGSALIAAGGSDPILRIWDPR  257 (347)
Q Consensus       181 ~~~~h~~~v~~~~~~-~~~~l~s~s~dg~v~vwd~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~  257 (347)
                      ....+...+..+++. ++..+++...++.|..||. +++.... +. ....+..+.+.++ +.+.++...++.|..||. 
T Consensus       135 ~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~-g~l~v~~~~~~~i~~~~~-  211 (299)
T 2z2n_A          135 ELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGND-DALWFVEIIGNKIGRITT-  211 (299)
T ss_dssp             ECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTT-SSEEEEETTTTEEEEECT-
T ss_pred             cCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCC-CCEEEEccCCceEEEECC-
Confidence            011122346677764 5555555556788999998 5554321 11 1234567788665 456666666889999998 


Q ss_pred             CCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceee--cCCCCeEEEEeecCCCEEEEccCC
Q 036314          258 KPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVI--DSHKDKVLCADWWRGDSVISGGVD  335 (347)
Q Consensus       258 ~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~--~~h~~~v~~~~~~~~~~l~s~s~D  335 (347)
                      .. .. .......+...+.++++++++. +.++...++.|.+||.+ ++ +..+  ..+...+.++.+.+|...++.+.+
T Consensus       212 ~g-~~-~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~d~~-g~-~~~~~~~~~~~~~~~i~~~~g~l~v~~~~~  286 (299)
T 2z2n_A          212 SG-EI-TEFKIPTPNARPHAITAGAGID-LWFTEWGANKIGRLTSN-NI-IEEYPIQIKSAEPHGICFDGETIWFAMECD  286 (299)
T ss_dssp             TC-CE-EEEECSSTTCCEEEEEECSTTC-EEEEETTTTEEEEEETT-TE-EEEEECSSSSCCEEEEEECSSCEEEEETTT
T ss_pred             CC-cE-EEEECCCCCCCceeEEECCCCC-EEEeccCCceEEEECCC-Cc-eEEEeCCCCCCccceEEecCCCEEEEecCC
Confidence            32 21 1223344556789999999975 45555577899999984 43 3333  344567888888335555554545


Q ss_pred             ceEEE
Q 036314          336 SKLCV  340 (347)
Q Consensus       336 ~~v~v  340 (347)
                      +.+++
T Consensus       287 ~l~~~  291 (299)
T 2z2n_A          287 KIGKL  291 (299)
T ss_dssp             EEEEE
T ss_pred             cEEEE
Confidence            44444

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.48  E-value=3.5e-11  Score=108.25  Aligned_cols=228  Identities=11%  Similarity=0.029  Sum_probs=133.2

Q ss_pred             ccCC-CCCEEEEEecCCeEEEEcCC-CeEEEEeeccCCceEE---E----------------EEeecCCCceEEEEEc--
Q 036314           30 VDGS-NPGFILTGCYDNLGRVWKAG-GVCTHILEGHCGAVSS---V----------------NIIKSDGLKYVTVATA--   86 (347)
Q Consensus        30 ~~~~-~~~~l~sg~~d~~i~iw~~~-~~~~~~l~~h~~~V~~---v----------------~~~~~~~~~~~~l~s~--   86 (347)
                      +.++ ++++|+.++.++.+++|+.. +.....+..+.+....   +                .++|++.    .++..  
T Consensus        86 ~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~----~~~~~~~  161 (396)
T 3c5m_A           86 GFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTS----WEKFAEF  161 (396)
T ss_dssp             CEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCS----HHHHHHH
T ss_pred             ceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCc----ceeeeee
Confidence            5566 56799999999999999975 4444444444442222   1                2233221    12222  


Q ss_pred             ---cCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeC-CCCEEEEeeCC------CcEEEEecCCCCCCCc
Q 036314           87 ---SKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAET-SGNMVCSGSWD------CTISLWRTNDSDAAGN  156 (347)
Q Consensus        87 ---s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~-~~~~l~sgs~D------g~I~iwd~~~~~~~~~  156 (347)
                         ..+..|.+||+.+++.          ..+..+...+..++|+| +++.|+..+.+      ..|.+|++....    
T Consensus       162 ~~~~~~~~l~~~d~~~g~~----------~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~----  227 (396)
T 3c5m_A          162 YHTNPTCRLIKVDIETGEL----------EVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSN----  227 (396)
T ss_dssp             HHTCCCEEEEEEETTTCCE----------EEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCC----
T ss_pred             ccCCCcceEEEEECCCCcE----------EeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCc----
Confidence               3566889999876532          12334667788999999 78877655543      357777764321    


Q ss_pred             cceeeeccCCCccccccccccccccccCC--ccceEEEEe-CCCCeEEEEecC-----CcEEEEECCCCceeeeeeeCee
Q 036314          157 QVSIKKRKGNNQVEEPQLEGEAISTLVGH--TQCVSSVVW-PQQETIYSASWD-----HSVRTWDVEMGKDLSDIFCGKA  228 (347)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~-~~~~~l~s~s~d-----g~v~vwd~~~~~~~~~~~~~~~  228 (347)
                                            ...+..+  ...+..+.| |+++.|+.++.+     +.|.+||+.+++........ .
T Consensus       228 ----------------------~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~-~  284 (396)
T 3c5m_A          228 ----------------------VRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMP-P  284 (396)
T ss_dssp             ----------------------CEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECC-S
T ss_pred             ----------------------eeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCC-C
Confidence                                  1111111  224666777 577777776654     45999999887643222111 2


Q ss_pred             eEEEEeeCCCCcEEEEec----------------CCCcEEEEeCCCCCCCCCeEEecCCCC-----------CeeEEEeC
Q 036314          229 LNCIDIGGEGSALIAAGG----------------SDPILRIWDPRKPGTSAPVFQFSSHNS-----------WISACKWH  281 (347)
Q Consensus       229 ~~~~~~~~~~~~~la~~~----------------~d~~i~iwd~~~~~~~~~~~~~~~h~~-----------~v~~v~~s  281 (347)
                      .. ..++++++.+++.++                .+..|++||+....    ...+..+..           .+..+.|+
T Consensus       285 ~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~----~~~l~~~~~~~~~~~~~~~~~~~~~~~s  359 (396)
T 3c5m_A          285 CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKS----AQKLCKHSTSWDVLDGDRQITHPHPSFT  359 (396)
T ss_dssp             EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTB----CCEEEECCCCCCCBTTBSSTTCCCCEEC
T ss_pred             CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCc----eEEccCCCCccccccccccCCCCCceEc
Confidence            22 677762444666543                34789999986432    123434443           25668899


Q ss_pred             CCCCeEEEEEeCCCcEEEEEcC
Q 036314          282 NKSWFHLISASYDGKVMLWDLR  303 (347)
Q Consensus       282 ~~~~~~l~s~s~D~~i~lwd~~  303 (347)
                      |++..++.++..++...||.++
T Consensus       360 ~dg~~l~~~s~~~~~~~l~~~~  381 (396)
T 3c5m_A          360 PNDDGVLFTSDFEGVPAIYIAD  381 (396)
T ss_dssp             TTSSEEEEEECTTSSCEEEEEE
T ss_pred             cCCCeEEEEecCCCCceEEEEE
Confidence            9997644444456666666543

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.47  E-value=2.6e-11  Score=104.30  Aligned_cols=217  Identities=9%  Similarity=-0.038  Sum_probs=141.4

Q ss_pred             CCCCEEEEEecCCeEEEEcC-CCeEEEEeeccC-CceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccc
Q 036314           33 SNPGFILTGCYDNLGRVWKA-GGVCTHILEGHC-GAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIR  110 (347)
Q Consensus        33 ~~~~~l~sg~~d~~i~iw~~-~~~~~~~l~~h~-~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~  110 (347)
                      +++++|++++.|+.|++||. +|+.+..+..+. ..+.++.+.|++    ..++  +.++.|+.||. +++.        
T Consensus         3 ~~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG----~ilv--s~~~~V~~~d~-~G~~--------   67 (276)
T 3no2_A            3 SPQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAG----EILF--SYSKGAKMITR-DGRE--------   67 (276)
T ss_dssp             CCCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTS----CEEE--ECBSEEEEECT-TSCE--------
T ss_pred             CCCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCC----CEEE--eCCCCEEEECC-CCCE--------
Confidence            36789999999999999998 799888888776 467889988854    3556  45778999998 4543        


Q ss_pred             eeeeeecc-ccceEEEEEeCCCCEEEEeeC-CCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccc
Q 036314          111 SFKILRGH-KASVHSIAAETSGNMVCSGSW-DCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQC  188 (347)
Q Consensus       111 ~~~~~~~h-~~~V~~v~~s~~~~~l~sgs~-Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  188 (347)
                       +-.+..+ ...+.++.+.++|+++++.+. ++.|..++.. ++    .........               ...++...
T Consensus        68 -~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~-Gk----~l~~~~~~~---------------~~~~~~~~  126 (276)
T 3no2_A           68 -LWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNMK-GE----VLSKTEFET---------------GIERPHAQ  126 (276)
T ss_dssp             -EEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECTT-SC----EEEEEEECC---------------SCSSGGGS
T ss_pred             -EEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeCC-CC----EEEEEeccC---------------CCCccccc
Confidence             2233333 346888999999999998887 7777766642 21    110000000               00011111


Q ss_pred             eEEEE-eCCCCeEEEEecCCcEEEEECCCCceeeeeeeCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEE
Q 036314          189 VSSVV-WPQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQ  267 (347)
Q Consensus       189 v~~~~-~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~  267 (347)
                      ...+. .++++++++.+.++.|.+||.+ ++.+-++.....+......+ ++.+++++..++.|..+|....   ..+.+
T Consensus       127 ~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~~~~~~~~~~-~g~~~v~~~~~~~v~~~d~~tG---~~~w~  201 (276)
T 3no2_A          127 FRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLSGTPFSSAFLD-NGDCLVACGDAHCFVQLNLESN---RIVRR  201 (276)
T ss_dssp             CSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECSSCCCEEEECT-TSCEEEECBTTSEEEEECTTTC---CEEEE
T ss_pred             ccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECCCCccceeEcC-CCCEEEEeCCCCeEEEEeCcCC---cEEEE
Confidence            11222 2678889999999999999987 88776665444444555544 4567777887889999997642   22444


Q ss_pred             ecCC------CCCeeEEEeCCCCCeEEEEE
Q 036314          268 FSSH------NSWISACKWHNKSWFHLISA  291 (347)
Q Consensus       268 ~~~h------~~~v~~v~~s~~~~~~l~s~  291 (347)
                      +..+      ...+..+...+++.. +++.
T Consensus       202 ~~~~~~~~~~l~~~~~~~~~~~G~i-~v~~  230 (276)
T 3no2_A          202 VNANDIEGVQLFFVAQLFPLQNGGL-YICN  230 (276)
T ss_dssp             EEGGGSBSCCCSEEEEEEECTTSCE-EEEE
T ss_pred             ecCCCCCCccccccccceEcCCCCE-EEEe
Confidence            4322      234677888888753 4444

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.46  E-value=1.3e-11  Score=109.21  Aligned_cols=232  Identities=9%  Similarity=0.023  Sum_probs=141.9

Q ss_pred             CceeeccCC-CCCEEEEEecC---Ce--EEEEcCCCeEEEEeeccCCceEEEEEeecCCCceEEEEEccC----------
Q 036314           25 DWVSAVDGS-NPGFILTGCYD---NL--GRVWKAGGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASK----------   88 (347)
Q Consensus        25 ~~v~~~~~~-~~~~l~sg~~d---~~--i~iw~~~~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~----------   88 (347)
                      ..+..++++ ++++||..+.+   +.  +.+|+..+.....+..+.. +..+.|+|++.    .|+.++.          
T Consensus        59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~-~~~~~wspdg~----~l~~~~~~~~~~~~~~~  133 (347)
T 2gop_A           59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN-IRSLEWNEDSR----KLLIVGFKRREDEDFIF  133 (347)
T ss_dssp             ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE-EEEEEECTTSS----EEEEEEECCCC------
T ss_pred             ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC-ccceeECCCCC----EEEEEEccCCCcCCcEE
Confidence            346667888 45688877754   34  6666765433333443444 89999998543    4555543          


Q ss_pred             -----------------CCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCC-------cEE
Q 036314           89 -----------------DQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDC-------TIS  144 (347)
Q Consensus        89 -----------------Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg-------~I~  144 (347)
                                       ...|.+||+.+++.         ...+.. . .+..++|+||| ++++++.+.       ...
T Consensus       134 ~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~---------~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~  201 (347)
T 2gop_A          134 EDDVPAWFDDLGFFDGEKTTFWIFDTESEEV---------IEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWD  201 (347)
T ss_dssp             ---CCCC---------CEEEEEEEETTTTEE---------EEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEE
T ss_pred             EcccceeecCcccccCccceEEEEECCCCeE---------EeeecC-C-CcccccCCCCe-EEEEEeccccccccccccc
Confidence                             25788899876542         122333 3 67889999999 888877653       456


Q ss_pred             EEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEeCCCCeEEEEecCC--------cEEEEECCC
Q 036314          145 LWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWPQQETIYSASWDH--------SVRTWDVEM  216 (347)
Q Consensus       145 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~dg--------~v~vwd~~~  216 (347)
                      ||.+.++.                          ...+..+ ..+..+ .|+++.|+.++.++        .|.+||  +
T Consensus       202 l~~~d~~~--------------------------~~~l~~~-~~~~~~-spdg~~l~~~~~~~~~~~~~~~~l~~~d--~  251 (347)
T 2gop_A          202 IYIWEDGK--------------------------EEKMFEK-VSFYAV-DSDGERILLYGKPEKKYMSEHNKLYIYD--G  251 (347)
T ss_dssp             EEEEETTE--------------------------EEEEEEE-ESEEEE-EECSSCEEEEECCSSSCCCSSCEEEEEC--S
T ss_pred             EEEeCCCc--------------------------eEEeccC-cceeeE-CCCCCEEEEEEccccCCccccceEEEEC--C
Confidence            66543110                          1111112 233444 47888887776543        577777  4


Q ss_pred             Cceeeeeee--CeeeEE-EEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeC
Q 036314          217 GKDLSDIFC--GKALNC-IDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASY  293 (347)
Q Consensus       217 ~~~~~~~~~--~~~~~~-~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~  293 (347)
                      ++. ..+..  ...+.. +.++  ++ ++++++.++.++|| +. .+.   ...+..+...|.++.|+| .  ++++++.
T Consensus       252 ~~~-~~l~~~~~~~~~~~~~~s--dg-~~~~~~~~~~~~l~-~~-~g~---~~~~~~~~~~v~~~~~s~-~--~~~~~~~  319 (347)
T 2gop_A          252 KEV-MGILDEVDRGVGQAKIKD--GK-VYFTLFEEGSVNLY-IW-DGE---IKPIAKGRHWIMGFDVDE-I--VVYLKET  319 (347)
T ss_dssp             SCE-EESSTTCCSEEEEEEEET--TE-EEEEEEETTEEEEE-EE-SSS---EEEEECSSSEEEEEEESS-S--EEEEEEC
T ss_pred             Cce-EeccccCCcccCCccEEc--Cc-EEEEEecCCcEEEE-Ec-CCc---eEEEecCCCeEEeeeeeC-c--EEEEEcC
Confidence            443 22322  234554 6775  44 88888899999999 86 222   234445577899999998 3  5677776


Q ss_pred             CCcE-EEEEcCCCccceeecCCCCe
Q 036314          294 DGKV-MLWDLRTAWPLSVIDSHKDK  317 (347)
Q Consensus       294 D~~i-~lwd~~~~~~~~~~~~h~~~  317 (347)
                      ++.. +||.++ ++ ...+..|...
T Consensus       320 ~~~~~~l~~~~-g~-~~~lt~~n~~  342 (347)
T 2gop_A          320 ATRLRELFTWD-GE-EKQLTDYNDP  342 (347)
T ss_dssp             SSSCCEEEEES-SS-EEECCCTTST
T ss_pred             CCChHHheEeC-Cc-EEEeccccHh
Confidence            6654 888876 43 5556666544

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.46  E-value=3.1e-11  Score=104.64  Aligned_cols=238  Identities=10%  Similarity=0.062  Sum_probs=148.2

Q ss_pred             CcCCceeeccCC-CCC-EEEEEecCCeEEEEcCCCeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccc
Q 036314           22 LHDDWVSAVDGS-NPG-FILTGCYDNLGRVWKAGGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDA   99 (347)
Q Consensus        22 ~h~~~v~~~~~~-~~~-~l~sg~~d~~i~iw~~~~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~   99 (347)
                      .+.....+++++ +++ +++++..++.|+.|+..+. ...+..+...+.++++.+++    ..+++...++.|.+||..+
T Consensus        25 ~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~l~~~~dg----~l~v~~~~~~~i~~~d~~~   99 (296)
T 3e5z_A           25 DGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-LSPEMHPSHHQNGHCLNKQG----HLIACSHGLRRLERQREPG   99 (296)
T ss_dssp             CCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-EEEEESSCSSEEEEEECTTC----CEEEEETTTTEEEEECSTT
T ss_pred             cCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-eEEEECCCCCcceeeECCCC----cEEEEecCCCeEEEEcCCC
Confidence            345566677776 455 7888889999999998766 66777788889999998844    3566666778999999866


Q ss_pred             cccccCccccceeeeeec-cccceEEEEEeCCCCEEEEeeCCC---------------cEEEEecCCCCCCCccceeeec
Q 036314          100 EELVNHPKKIRSFKILRG-HKASVHSIAAETSGNMVCSGSWDC---------------TISLWRTNDSDAAGNQVSIKKR  163 (347)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~-h~~~V~~v~~s~~~~~l~sgs~Dg---------------~I~iwd~~~~~~~~~~~~~~~~  163 (347)
                      ++...      ......+ ....+..++++++|+++++.+..+               .-.||.+....           
T Consensus       100 g~~~~------~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~g-----------  162 (296)
T 3e5z_A          100 GEWES------IADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDG-----------  162 (296)
T ss_dssp             CCEEE------EECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTTS-----------
T ss_pred             CcEEE------EeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCCC-----------
Confidence            54311      0000111 123456799999999888732111               12344432210           


Q ss_pred             cCCCccccccccccccccccCCccceEEEEe-CCCCeEEEEecCCcEEEEECC-CCce---eeeee-eCeeeEEEEeeCC
Q 036314          164 KGNNQVEEPQLEGEAISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVE-MGKD---LSDIF-CGKALNCIDIGGE  237 (347)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~l~s~s~dg~v~vwd~~-~~~~---~~~~~-~~~~~~~~~~~~~  237 (347)
                                    ....+..+......++| ++++.+++.+.++.|.+||+. ++..   ...+. ....+..+++.++
T Consensus       163 --------------~~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~  228 (296)
T 3e5z_A          163 --------------TLSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAG  228 (296)
T ss_dssp             --------------CEEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTT
T ss_pred             --------------CEEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCC
Confidence                          01112233344577887 567777777778999999986 4443   11121 1123456777665


Q ss_pred             CCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEe-CCCCCeEEEEEeCCCcEEEEEcCCC
Q 036314          238 GSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKW-HNKSWFHLISASYDGKVMLWDLRTA  305 (347)
Q Consensus       238 ~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~-s~~~~~~l~s~s~D~~i~lwd~~~~  305 (347)
                      + ++.++.  ++.|.+||...    .....+..+.. +.+++| .|++.. |+.++.++ +..++.++.
T Consensus       229 G-~l~v~~--~~~v~~~~~~g----~~~~~~~~~~~-~~~~~f~~~d~~~-L~v~t~~~-l~~~~~~~~  287 (296)
T 3e5z_A          229 G-LIWASA--GDGVHVLTPDG----DELGRVLTPQT-TSNLCFGGPEGRT-LYMTVSTE-FWSIETNVR  287 (296)
T ss_dssp             S-CEEEEE--TTEEEEECTTS----CEEEEEECSSC-CCEEEEESTTSCE-EEEEETTE-EEEEECSCC
T ss_pred             C-CEEEEc--CCeEEEECCCC----CEEEEEECCCC-ceeEEEECCCCCE-EEEEcCCe-EEEEEcccc
Confidence            5 455554  78999999752    23455666666 899999 577754 66666653 444455543

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.45  E-value=5.2e-11  Score=101.50  Aligned_cols=236  Identities=8%  Similarity=-0.039  Sum_probs=148.7

Q ss_pred             ceeeccCC-CCCEEE-EEecCCeEEEEcCCCeEEEEe-eccCCceEEEEEeecCCCceEEEEEccCCCcEEEEecccccc
Q 036314           26 WVSAVDGS-NPGFIL-TGCYDNLGRVWKAGGVCTHIL-EGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEEL  102 (347)
Q Consensus        26 ~v~~~~~~-~~~~l~-sg~~d~~i~iw~~~~~~~~~l-~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~  102 (347)
                      ...+++++ ++.+++ +.+.++.|+.|+..+.....+ ..+...+.++++.+++    ..+++.. ++.|.+||......
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g----~l~v~~~-~~~i~~~d~~~~~~   99 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAG----TVYVTDF-NNRVVTLAAGSNNQ   99 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTC----CEEEEET-TTEEEEECTTCSCC
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCC----CEEEEcC-CCEEEEEeCCCceE
Confidence            56667766 456666 556788999999754333332 2333457788887743    2344444 88999999765421


Q ss_pred             ccCccccceeeeee-ccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCcccccccccccccc
Q 036314          103 VNHPKKIRSFKILR-GHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAIST  181 (347)
Q Consensus       103 ~~~~~~~~~~~~~~-~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (347)
                                ..+. .....+..++++++|+++++...++.|.+|+..+...                         ...
T Consensus       100 ----------~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~-------------------------~~~  144 (270)
T 1rwi_B          100 ----------TVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQ-------------------------TVL  144 (270)
T ss_dssp             ----------EECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSC-------------------------EEC
T ss_pred             ----------eeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCcee-------------------------Eee
Confidence                      1111 2235678999999999888878889999996432210                         000


Q ss_pred             ccCCccceEEEEe-CCCCeEEEEecCCcEEEEECCCCceeeeeeeC-eeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCC
Q 036314          182 LVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFCG-KALNCIDIGGEGSALIAAGGSDPILRIWDPRKP  259 (347)
Q Consensus       182 ~~~h~~~v~~~~~-~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~  259 (347)
                      .........++++ +++..+++...++.|.+||............. ..+..+++.+++ .++++...++.|.+||....
T Consensus       145 ~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g-~l~v~~~~~~~v~~~~~~~~  223 (270)
T 1rwi_B          145 PFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAG-TVYVTEHNTNQVVKLLAGST  223 (270)
T ss_dssp             CCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTC-CEEEEETTTSCEEEECTTCS
T ss_pred             ccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCC-CEEEEECCCCcEEEEcCCCC
Confidence            0011123455666 45665566666789999998765433222222 346778887655 67777777889999997532


Q ss_pred             CCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCc
Q 036314          260 GTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAW  306 (347)
Q Consensus       260 ~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~  306 (347)
                      .   .......+...+.+++++|++. ++++...+++|+++++...+
T Consensus       224 ~---~~~~~~~~~~~p~~i~~~~~g~-l~v~~~~~~~v~~~~~~~~~  266 (270)
T 1rwi_B          224 T---STVLPFTGLNTPLAVAVDSDRT-VYVADRGNDRVVKLTSLEHH  266 (270)
T ss_dssp             C---CEECCCCSCSCEEEEEECTTCC-EEEEEGGGTEEEEECCCGGG
T ss_pred             c---ceeeccCCCCCceeEEECCCCC-EEEEECCCCEEEEEcCCCcc
Confidence            1   1222223345788999999985 68888899999999987654

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.43  E-value=2.9e-11  Score=106.51  Aligned_cols=232  Identities=6%  Similarity=-0.014  Sum_probs=149.7

Q ss_pred             CceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEE
Q 036314           65 GAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTIS  144 (347)
Q Consensus        65 ~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~  144 (347)
                      ..|.++.|.+...    .++..+.+++++.|.-            +....+..+...+.+++|+++|++++++..++.|.
T Consensus         6 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~   69 (333)
T 2dg1_A            6 QDLPTLFYSGKSN----SAVPIISESELQTITA------------EPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIF   69 (333)
T ss_dssp             CCCCBCCSCGGGG----CSSCCCCGGGSCEEEC------------EEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEE
T ss_pred             cccceeeecCCcc----ceeEEeecccCccccc------------ceeEEEeccCccccCcEECCCCCEEEEECCCCEEE
Confidence            4466777777432    3555677889999932            13345566777789999999999888889999999


Q ss_pred             EEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEeC-CCCeEEEEecC----CcEEEEECCCCce
Q 036314          145 LWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWP-QQETIYSASWD----HSVRTWDVEMGKD  219 (347)
Q Consensus       145 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~l~s~s~d----g~v~vwd~~~~~~  219 (347)
                      +||..+...                         ......+...+.++++. +++.+++...+    +.|.+||..++..
T Consensus        70 ~~d~~~~~~-------------------------~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~  124 (333)
T 2dg1_A           70 KINPETKEI-------------------------KRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNL  124 (333)
T ss_dssp             EECTTTCCE-------------------------EEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSC
T ss_pred             EEeCCCCcE-------------------------EEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEE
Confidence            998764321                         01111234567888884 66666665555    5899999887654


Q ss_pred             eeeee---eCeeeEEEEeeCCCCcEEEEecC------CCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEE
Q 036314          220 LSDIF---CGKALNCIDIGGEGSALIAAGGS------DPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLIS  290 (347)
Q Consensus       220 ~~~~~---~~~~~~~~~~~~~~~~~la~~~~------d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s  290 (347)
                      ...+.   ....+..+.+.+++ .++++...      .+.|..+|.... .   ...+..+...+..++|+|++..+.++
T Consensus       125 ~~~~~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~~~~~~~l~~~~~~~~-~---~~~~~~~~~~~~~i~~~~dg~~l~v~  199 (333)
T 2dg1_A          125 QDIIEDLSTAYCIDDMVFDSKG-GFYFTDFRGYSTNPLGGVYYVSPDFR-T---VTPIIQNISVANGIALSTDEKVLWVT  199 (333)
T ss_dssp             EEEECSSSSCCCEEEEEECTTS-CEEEEECCCBTTBCCEEEEEECTTSC-C---EEEEEEEESSEEEEEECTTSSEEEEE
T ss_pred             EEEEccCccCCcccceEECCCC-CEEEEeccccccCCCceEEEEeCCCC-E---EEEeecCCCcccceEECCCCCEEEEE
Confidence            32221   22356778887654 56555443      345666665421 1   22333334457889999998765666


Q ss_pred             EeCCCcEEEEEcCC-Ccccee--------ecCCCCeEEEEeec-CCCEEEEccCCceEEEeec
Q 036314          291 ASYDGKVMLWDLRT-AWPLSV--------IDSHKDKVLCADWW-RGDSVISGGVDSKLCVSSG  343 (347)
Q Consensus       291 ~s~D~~i~lwd~~~-~~~~~~--------~~~h~~~v~~~~~~-~~~~l~s~s~D~~v~vw~~  343 (347)
                      .+.++.|.+||+++ +..+..        +.++ ..+.++.+. +|+.+++...++.|.+|+-
T Consensus       200 ~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~  261 (333)
T 2dg1_A          200 ETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNK  261 (333)
T ss_dssp             EGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECT
T ss_pred             eCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECC
Confidence            67789999999964 333221        1222 467788886 4766777667889999864

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.43  E-value=1.2e-10  Score=102.59  Aligned_cols=251  Identities=8%  Similarity=-0.072  Sum_probs=154.4

Q ss_pred             ceeeccCCCCCEEEEEecCCeEEEEcCC-CeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEecccccccc
Q 036314           26 WVSAVDGSNPGFILTGCYDNLGRVWKAG-GVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVN  104 (347)
Q Consensus        26 ~v~~~~~~~~~~l~sg~~d~~i~iw~~~-~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~  104 (347)
                      ....+.+.++.+.++...+++|.+||.. ++.++.+.. ......+++++++    ...++...++.|.+||..+++.. 
T Consensus        45 ~~~~i~~~~~~lyv~~~~~~~v~viD~~t~~~~~~i~~-~~~p~~i~~~~~g----~lyv~~~~~~~v~~iD~~t~~~~-  118 (328)
T 3dsm_A           45 VAQSMVIRDGIGWIVVNNSHVIFAIDINTFKEVGRITG-FTSPRYIHFLSDE----KAYVTQIWDYRIFIINPKTYEIT-  118 (328)
T ss_dssp             CEEEEEEETTEEEEEEGGGTEEEEEETTTCCEEEEEEC-CSSEEEEEEEETT----EEEEEEBSCSEEEEEETTTTEEE-
T ss_pred             cceEEEEECCEEEEEEcCCCEEEEEECcccEEEEEcCC-CCCCcEEEEeCCC----eEEEEECCCCeEEEEECCCCeEE-
Confidence            3445555555666677778999999975 666666653 3557889987743    34455548899999998876532 


Q ss_pred             Cccccceeeeeeccc-----cceEEEEEeCCCCEEEEee-CCCcEEEEecCCCCCCCccceeeeccCCCccccccccccc
Q 036314          105 HPKKIRSFKILRGHK-----ASVHSIAAETSGNMVCSGS-WDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEA  178 (347)
Q Consensus       105 ~~~~~~~~~~~~~h~-----~~V~~v~~s~~~~~l~sgs-~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (347)
                              ..+....     .....+++ .++.++++.. .+++|.++|..+....                        
T Consensus       119 --------~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~------------------------  165 (328)
T 3dsm_A          119 --------GYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVV------------------------  165 (328)
T ss_dssp             --------EEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEE------------------------
T ss_pred             --------EEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEE------------------------
Confidence                    1222111     13455666 3444444443 4899999998764211                        


Q ss_pred             cccccCCccceEEEEe-CCCCeEEEEecC----------CcEEEEECCCCceeeeeee--CeeeEEEEeeCCCCcEEEEe
Q 036314          179 ISTLVGHTQCVSSVVW-PQQETIYSASWD----------HSVRTWDVEMGKDLSDIFC--GKALNCIDIGGEGSALIAAG  245 (347)
Q Consensus       179 ~~~~~~h~~~v~~~~~-~~~~~l~s~s~d----------g~v~vwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~la~~  245 (347)
                       ..+.... ....+.+ ++++.++++..+          +.|.++|.++++....+..  +.....+++++++..++++.
T Consensus       166 -~~i~~g~-~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~  243 (328)
T 3dsm_A          166 -DELTIGI-QPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWIN  243 (328)
T ss_dssp             -EEEECSS-CBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEES
T ss_pred             -EEEEcCC-CccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEc
Confidence             1111000 1123444 455555554444          7899999998876655543  34578899987666555543


Q ss_pred             cCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEE----eCCCcEEEEEcCCCccceeecCCCCeEEEE
Q 036314          246 GSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISA----SYDGKVMLWDLRTAWPLSVIDSHKDKVLCA  321 (347)
Q Consensus       246 ~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~----s~D~~i~lwd~~~~~~~~~~~~h~~~v~~~  321 (347)
                      .   .|.+||+..... .....+..+......++++|++..+.++.    ..+++|.+||.+ ++.+.++..- .....+
T Consensus       244 ~---~v~~~d~~t~~~-~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~G-~~P~~~  317 (328)
T 3dsm_A          244 N---DIWRMPVEADRV-PVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYVG-IIPGAF  317 (328)
T ss_dssp             S---SEEEEETTCSSC-CSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEEE-ESEEEE
T ss_pred             c---EEEEEECCCCce-eeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEEec-cCcceE
Confidence            2   899999864321 11111222245678899999666667776    678999999998 8777776431 223455


Q ss_pred             ee
Q 036314          322 DW  323 (347)
Q Consensus       322 ~~  323 (347)
                      +|
T Consensus       318 ~~  319 (328)
T 3dsm_A          318 CW  319 (328)
T ss_dssp             EE
T ss_pred             EE
Confidence            55

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.42  E-value=3.2e-10  Score=107.00  Aligned_cols=224  Identities=11%  Similarity=0.067  Sum_probs=150.4

Q ss_pred             EEEEEccCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecC--CCCCCCccc
Q 036314           81 VTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTN--DSDAAGNQV  158 (347)
Q Consensus        81 ~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~--~~~~~~~~~  158 (347)
                      ..+++...+++|.++|..+++.         +.++.. ...++.++|+|||+++++++.|+.|.+||+.  +..      
T Consensus       168 ~~~V~~~~~~~V~viD~~t~~v---------~~~i~~-g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~------  231 (567)
T 1qks_A          168 LFSVTLRDAGQIALIDGSTYEI---------KTVLDT-GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPT------  231 (567)
T ss_dssp             EEEEEETTTTEEEEEETTTCCE---------EEEEEC-SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCC------
T ss_pred             eEEEEeCCCCeEEEEECCCCeE---------EEEEeC-CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCc------
Confidence            5678889999999999987653         233332 2356789999999999999999999999985  321      


Q ss_pred             eeeeccCCCccccccccccccccccCCccceEEEEeC-----CCCeEEEEe-cCCcEEEEECCCCceeeeeeeCe-----
Q 036314          159 SIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWP-----QQETIYSAS-WDHSVRTWDVEMGKDLSDIFCGK-----  227 (347)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-----~~~~l~s~s-~dg~v~vwd~~~~~~~~~~~~~~-----  227 (347)
                                         .+..+.... ....++++     ++++++.+. .++++.++|..+.+.+..+....     
T Consensus       232 -------------------~v~~i~~G~-~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~  291 (567)
T 1qks_A          232 -------------------TVAEIKIGS-EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDE  291 (567)
T ss_dssp             -------------------EEEEEECCS-EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTT
T ss_pred             -------------------EeEEEecCC-CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEecccccccc
Confidence                               111222111 23456665     788776554 55899999999988777665321     


Q ss_pred             -------eeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEE
Q 036314          228 -------ALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLW  300 (347)
Q Consensus       228 -------~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lw  300 (347)
                             .+..+..++.+..+++...++|.|.++|....... .+..+ ........+.|+|++.++++++..+++|.++
T Consensus       292 ~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~-~v~~i-~~~~~~~d~~~~pdgr~~~va~~~sn~V~Vi  369 (567)
T 1qks_A          292 QEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNL-KTTEI-SAERFLHDGGLDGSHRYFITAANARNKLVVI  369 (567)
T ss_dssp             CCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEE-EEEEE-ECCSSEEEEEECTTSCEEEEEEGGGTEEEEE
T ss_pred             ccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccc-eeeee-eccccccCceECCCCCEEEEEeCCCCeEEEE
Confidence                   24455555555666777778899999998643211 12222 2345677889999998877777788999999


Q ss_pred             EcCCCccceeecC-----CCCeEEEEee-cC-CCE-EEEcc-CCceEEEeecc
Q 036314          301 DLRTAWPLSVIDS-----HKDKVLCADW-WR-GDS-VISGG-VDSKLCVSSGV  344 (347)
Q Consensus       301 d~~~~~~~~~~~~-----h~~~v~~~~~-~~-~~~-l~s~s-~D~~v~vw~~~  344 (347)
                      |..+++.+..+.-     |.+.  ...| .| +.. ++++. .+++|.|++.-
T Consensus       370 D~~t~kl~~~i~vgg~~Phpg~--g~~~~~p~~g~v~~t~~~g~~~Vsvid~~  420 (567)
T 1qks_A          370 DTKEGKLVAIEDTGGQTPHPGR--GANFVHPTFGPVWATSHMGDDSVALIGTD  420 (567)
T ss_dssp             ETTTTEEEEEEECSSSSBCCTT--CEEEEETTTEEEEEEEBSSSSEEEEEECC
T ss_pred             ECCCCcEEEEEeccCcCCCCcc--ceeeECCCCCcEEEeCCCCCCeEEEecCC
Confidence            9999876655432     4322  2233 45 344 45543 46899999764

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.41  E-value=1.9e-10  Score=98.00  Aligned_cols=234  Identities=6%  Similarity=-0.020  Sum_probs=148.1

Q ss_pred             ceEEEEEeecCCCceEEEE-EccCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEE
Q 036314           66 AVSSVNIIKSDGLKYVTVA-TASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTIS  144 (347)
Q Consensus        66 ~V~~v~~~~~~~~~~~~l~-s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~  144 (347)
                      ...++++.+++    ..++ +.+.++.|.+|+..+....         .....+...+.+++++++|+++++.. ++.|.
T Consensus        25 ~p~~i~~~~~g----~l~v~~~~~~~~i~~~~~~~~~~~---------~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~   90 (270)
T 1rwi_B           25 SPSGVAVDSAG----NVYVTSEGMYGRVVKLATGSTGTT---------VLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVV   90 (270)
T ss_dssp             CEEEEEECTTC----CEEEEECSSSCEEEEECC-----E---------ECCCCSCCSCCCEEECTTCCEEEEET-TTEEE
T ss_pred             CccceEECCCC----CEEEEccCCCCcEEEecCCCcccc---------eEeeCCcCCcceeEECCCCCEEEEcC-CCEEE
Confidence            45778887743    2455 5578889999987543211         01112334577899999999777665 88999


Q ss_pred             EEecCCCCCCCccceeeeccCCCcccccccccccccccc-CCccceEEEEeC-CCCeEEEEecCCcEEEEECCCCceeee
Q 036314          145 LWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLV-GHTQCVSSVVWP-QQETIYSASWDHSVRTWDVEMGKDLSD  222 (347)
Q Consensus       145 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~-~~~~l~s~s~dg~v~vwd~~~~~~~~~  222 (347)
                      +||......                          ..+. ........+++. ++..+++...++.|.+||..+......
T Consensus        91 ~~d~~~~~~--------------------------~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~  144 (270)
T 1rwi_B           91 TLAAGSNNQ--------------------------TVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVL  144 (270)
T ss_dssp             EECTTCSCC--------------------------EECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEEC
T ss_pred             EEeCCCceE--------------------------eeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEee
Confidence            998654211                          0010 112345677774 566566666778899998655433221


Q ss_pred             eeeC-eeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEE
Q 036314          223 IFCG-KALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWD  301 (347)
Q Consensus       223 ~~~~-~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd  301 (347)
                      .... ..+..+++.+++ .++++...++.|.+||.....   .......+...+..+++++++ .++++...++.|.+||
T Consensus       145 ~~~~~~~p~~i~~~~~g-~l~v~~~~~~~i~~~~~~~~~---~~~~~~~~~~~p~~i~~d~~g-~l~v~~~~~~~v~~~~  219 (270)
T 1rwi_B          145 PFTGLNDPDGVAVDNSG-NVYVTDTDNNRVVKLEAESNN---QVVLPFTDITAPWGIAVDEAG-TVYVTEHNTNQVVKLL  219 (270)
T ss_dssp             CCCSCCSCCCEEECTTC-CEEEEEGGGTEEEEECTTTCC---EEECCCSSCCSEEEEEECTTC-CEEEEETTTSCEEEEC
T ss_pred             ccccCCCceeEEEeCCC-CEEEEECCCCEEEEEecCCCc---eEeecccCCCCceEEEECCCC-CEEEEECCCCcEEEEc
Confidence            1111 245677886654 577777778899999976421   111112333568899999998 5567667788999999


Q ss_pred             cCCCccceeecCCCCeEEEEeec-CCCEEEEccCCceEEEeecc
Q 036314          302 LRTAWPLSVIDSHKDKVLCADWW-RGDSVISGGVDSKLCVSSGV  344 (347)
Q Consensus       302 ~~~~~~~~~~~~h~~~v~~~~~~-~~~~l~s~s~D~~v~vw~~~  344 (347)
                      .+..........+...+.++++. +|+.+++...+++|++++-.
T Consensus       220 ~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~  263 (270)
T 1rwi_B          220 AGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSL  263 (270)
T ss_dssp             TTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCC
T ss_pred             CCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCC
Confidence            97654333222334578899996 47778888899999998765

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.41  E-value=2.4e-11  Score=118.98  Aligned_cols=247  Identities=14%  Similarity=0.065  Sum_probs=147.8

Q ss_pred             CcCCceeeccCC-CCCEEEEEecC-----CeEEEEcCC-CeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCc---
Q 036314           22 LHDDWVSAVDGS-NPGFILTGCYD-----NLGRVWKAG-GVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQT---   91 (347)
Q Consensus        22 ~h~~~v~~~~~~-~~~~l~sg~~d-----~~i~iw~~~-~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~---   91 (347)
                      +|+..+..+++| ++++||.++.+     .+|++||+. |..+.. ..+...+..++|+|+ .    .|+.++.|+.   
T Consensus       160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~-~~~~~~~~~~~wspD-~----~l~~~~~~~~~~~  233 (741)
T 1yr2_A          160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD-ELKWVKFSGLAWLGN-D----ALLYSRFAEPKEG  233 (741)
T ss_dssp             ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE-EEEEEESCCCEESTT-S----EEEEEECCCC---
T ss_pred             CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc-cCCCceeccEEEECC-C----EEEEEEecCcccc
Confidence            454567888888 55678776554     469999985 444332 222223457889885 3    4666665544   


Q ss_pred             -----------EEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCC-----cEEEEecCCCCCCC
Q 036314           92 -----------LRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDC-----TISLWRTNDSDAAG  155 (347)
Q Consensus        92 -----------v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg-----~I~iwd~~~~~~~~  155 (347)
                                 |++|++.+++..     .+.+.....|...+.++.|+|||++|+..+.++     .|.+||+.++..  
T Consensus       234 ~~~~~~~~~~~v~~~~lgt~~~~-----~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~--  306 (741)
T 1yr2_A          234 QAFQALNYNQTVWLHRLGTPQSA-----DQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKI--  306 (741)
T ss_dssp             -----CCCCCEEEEEETTSCGGG-----CEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEE--
T ss_pred             cccccCCCCCEEEEEECCCCchh-----CEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCC--
Confidence                       888988654310     112222223334588899999999888776544     788888764310  


Q ss_pred             ccceeeeccCCCccccccccccccccccCCccceEEEEeCCCCeEEEEecC----CcEEEEECCCCc-eeeeeeeC--ee
Q 036314          156 NQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWPQQETIYSASWD----HSVRTWDVEMGK-DLSDIFCG--KA  228 (347)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d----g~v~vwd~~~~~-~~~~~~~~--~~  228 (347)
                                           .....+..+...+....+++++.|+..+.+    +.|.+||+.++. ....+...  ..
T Consensus       307 ---------------------~~~~~l~~~~~~~~~~~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~  365 (741)
T 1yr2_A          307 ---------------------GPVTALIPDLKAQWDFVDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDN  365 (741)
T ss_dssp             ---------------------CCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSE
T ss_pred             ---------------------cccEEecCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCe
Confidence                                 001122233333344445788888777654    349999987752 33333322  23


Q ss_pred             eEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecC-CCCCeeEEEeCCCCCeEEEEEe---CCCcEEEEEcCC
Q 036314          229 LNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSS-HNSWISACKWHNKSWFHLISAS---YDGKVMLWDLRT  304 (347)
Q Consensus       229 ~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~-h~~~v~~v~~s~~~~~~l~s~s---~D~~i~lwd~~~  304 (347)
                      +..+++.  ++.++++...|+..+||.....+.  ....+.. +...+..+.++|++..++++.+   ..++|.+||+.+
T Consensus       366 l~~~~~~--~~~lv~~~~~dg~~~l~~~~~~g~--~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~t  441 (741)
T 1yr2_A          366 LESVGIA--GNRLFASYIHDAKSQVLAFDLDGK--PAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPAT  441 (741)
T ss_dssp             EEEEEEE--BTEEEEEEEETTEEEEEEEETTSC--EEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTT
T ss_pred             EEEEEEE--CCEEEEEEEECCEEEEEEEeCCCC--ceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCC
Confidence            4455554  456788888888877775432121  2344543 3567888999998876444443   347899999987


Q ss_pred             Cc
Q 036314          305 AW  306 (347)
Q Consensus       305 ~~  306 (347)
                      ++
T Consensus       442 g~  443 (741)
T 1yr2_A          442 AK  443 (741)
T ss_dssp             TE
T ss_pred             Cc
Confidence            65

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.38  E-value=4.2e-10  Score=96.68  Aligned_cols=207  Identities=11%  Similarity=0.039  Sum_probs=136.2

Q ss_pred             EEEEEccCCCcEEEEeccccccccCccccceeeeeeccc-cceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccce
Q 036314           81 VTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHK-ASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVS  159 (347)
Q Consensus        81 ~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~-~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~  159 (347)
                      ..|++++.|+.|.+||.++++.         +-.+..+. ..++++++.|+|++++  +.++.|..||. +++       
T Consensus         6 ~~lv~~~~~~~v~~~d~~tG~~---------~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~-------   66 (276)
T 3no2_A            6 HLLVGGSGWNKIAIINKDTKEI---------VWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGR-------   66 (276)
T ss_dssp             EEEEECTTCSEEEEEETTTTEE---------EEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSC-------
T ss_pred             cEEEeeCCCCEEEEEECCCCeE---------EEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCC-------
Confidence            5789999999999999877753         23444454 4688899999999988  45788999986 332       


Q ss_pred             eeeccCCCccccccccccccccccCC-ccceEEEEe-CCCCeEEEEec-CCcEEEEECCCCceeeeeeeCe-------ee
Q 036314          160 IKKRKGNNQVEEPQLEGEAISTLVGH-TQCVSSVVW-PQQETIYSASW-DHSVRTWDVEMGKDLSDIFCGK-------AL  229 (347)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~-~~~~~l~s~s~-dg~v~vwd~~~~~~~~~~~~~~-------~~  229 (347)
                                        .+..+..+ ...+.++.+ ++++.+++.+. ++.|..+|. +++.+..+....       ..
T Consensus        67 ------------------~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~  127 (276)
T 3no2_A           67 ------------------ELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQF  127 (276)
T ss_dssp             ------------------EEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSC
T ss_pred             ------------------EEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccc
Confidence                              12222222 124555554 68888888776 777777775 676665543211       12


Q ss_pred             EEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccce
Q 036314          230 NCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLS  309 (347)
Q Consensus       230 ~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~  309 (347)
                      ..+...+ ++.++++...++.|..||.. .+   .+.++..+ ....++.+.+++. .+++++.+++|..+|.++|+.+-
T Consensus       128 ~~v~~~~-~G~~lv~~~~~~~v~~~d~~-G~---~~w~~~~~-~~~~~~~~~~~g~-~~v~~~~~~~v~~~d~~tG~~~w  200 (276)
T 3no2_A          128 RQINKNK-KGNYLVPLFATSEVREIAPN-GQ---LLNSVKLS-GTPFSSAFLDNGD-CLVACGDAHCFVQLNLESNRIVR  200 (276)
T ss_dssp             SCCEECT-TSCEEEEETTTTEEEEECTT-SC---EEEEEECS-SCCCEEEECTTSC-EEEECBTTSEEEEECTTTCCEEE
T ss_pred             cCceECC-CCCEEEEecCCCEEEEECCC-CC---EEEEEECC-CCccceeEcCCCC-EEEEeCCCCeEEEEeCcCCcEEE
Confidence            2233433 45688888899999999976 32   24555443 3455677788875 57777888899999999888776


Q ss_pred             eecCCC------CeEEEEeec-CCCEEEEc
Q 036314          310 VIDSHK------DKVLCADWW-RGDSVISG  332 (347)
Q Consensus       310 ~~~~h~------~~v~~~~~~-~~~~l~s~  332 (347)
                      ++..+.      ..+.++..- +|+.+++.
T Consensus       201 ~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~  230 (276)
T 3no2_A          201 RVNANDIEGVQLFFVAQLFPLQNGGLYICN  230 (276)
T ss_dssp             EEEGGGSBSCCCSEEEEEEECTTSCEEEEE
T ss_pred             EecCCCCCCccccccccceEcCCCCEEEEe
Confidence            664321      225555553 56665554

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.37  E-value=1.4e-10  Score=113.52  Aligned_cols=270  Identities=9%  Similarity=-0.015  Sum_probs=154.9

Q ss_pred             CCCEEEEEecCC---eEEEEc--CC----CeEEEEe------eccCCceEEEEEeecCCCceEEEEEccCC-----CcEE
Q 036314           34 NPGFILTGCYDN---LGRVWK--AG----GVCTHIL------EGHCGAVSSVNIIKSDGLKYVTVATASKD-----QTLR   93 (347)
Q Consensus        34 ~~~~l~sg~~d~---~i~iw~--~~----~~~~~~l------~~h~~~V~~v~~~~~~~~~~~~l~s~s~D-----g~v~   93 (347)
                      +|++++....++   ...+|.  ..    +.....+      .+|...+..++|+|++.    .||.++.+     .+|+
T Consensus       117 dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~----~la~~~~~~G~e~~~i~  192 (741)
T 1yr2_A          117 RGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGR----LLAYSVQDGGSDWRTVK  192 (741)
T ss_dssp             ETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSS----EEEEEEEETTCSEEEEE
T ss_pred             ECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCC----EEEEEEcCCCCceEEEE
Confidence            466766655544   366674  22    2222222      23434678899998543    45544433     4699


Q ss_pred             EEeccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCc--------------EEEEecCCCCCCCccce
Q 036314           94 LWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCT--------------ISLWRTNDSDAAGNQVS  159 (347)
Q Consensus        94 ~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~--------------I~iwd~~~~~~~~~~~~  159 (347)
                      +||+.+++.+.          ...+...+..++|+|| +.|+.++.|+.              |++|++.++...     
T Consensus       193 v~dl~tg~~~~----------~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~-----  256 (741)
T 1yr2_A          193 FVGVADGKPLA----------DELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSA-----  256 (741)
T ss_dssp             EEETTTCCEEE----------EEEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGG-----
T ss_pred             EEECCCCCCCC----------ccCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchh-----
Confidence            99998875321          1112222356889999 98888877665              777877543210     


Q ss_pred             eeeccCCCccccccccccccccccCCccceEEEEe-CCCCeEEEEecCC-----cEEEEECCCC--ceeeeeeeCe-eeE
Q 036314          160 IKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW-PQQETIYSASWDH-----SVRTWDVEMG--KDLSDIFCGK-ALN  230 (347)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~l~s~s~dg-----~v~vwd~~~~--~~~~~~~~~~-~~~  230 (347)
                                      ...+.....+...+..+.| +++++|+..+.++     .|.+||+.++  .....+.... ...
T Consensus       257 ----------------~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~  320 (741)
T 1yr2_A          257 ----------------DQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQW  320 (741)
T ss_dssp             ----------------CEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCE
T ss_pred             ----------------CEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceE
Confidence                            0111122233334667777 5777887776544     7999999876  3133343222 222


Q ss_pred             EEEeeCCCCcEEEEecC---CCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcC-CCc
Q 036314          231 CIDIGGEGSALIAAGGS---DPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLR-TAW  306 (347)
Q Consensus       231 ~~~~~~~~~~~la~~~~---d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~-~~~  306 (347)
                      .. +.+++..+++....   ++.|.+||+..+. ......+..+...+..+.|+  +..++++...|+..+||.++ ++.
T Consensus       321 ~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~-~~~~~l~~~~~~~l~~~~~~--~~~lv~~~~~dg~~~l~~~~~~g~  396 (741)
T 1yr2_A          321 DF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGST-PRFDTVVPESKDNLESVGIA--GNRLFASYIHDAKSQVLAFDLDGK  396 (741)
T ss_dssp             EE-EEEETTEEEEEECTTCTTCEEEEEECSSSS-CEEEEEECCCSSEEEEEEEE--BTEEEEEEEETTEEEEEEEETTSC
T ss_pred             EE-EeccCCEEEEEECCCCCCCEEEEEeCCCCc-cccEEEecCCCCeEEEEEEE--CCEEEEEEEECCEEEEEEEeCCCC
Confidence            22 23445444433322   4569999986431 11122334444556677776  34678899999988888654 344


Q ss_pred             cceeecC-CCCeEEEEeecC-CCEEE----EccCCceEEEeec
Q 036314          307 PLSVIDS-HKDKVLCADWWR-GDSVI----SGGVDSKLCVSSG  343 (347)
Q Consensus       307 ~~~~~~~-h~~~v~~~~~~~-~~~l~----s~s~D~~v~vw~~  343 (347)
                      ....+.. +.+.+..+.+++ ++.|+    +....++|.+|+.
T Consensus       397 ~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~  439 (741)
T 1yr2_A          397 PAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDP  439 (741)
T ss_dssp             EEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEET
T ss_pred             ceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEEC
Confidence            5555554 367788888875 55554    4456788999874

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.37  E-value=5.3e-10  Score=97.34  Aligned_cols=243  Identities=9%  Similarity=0.013  Sum_probs=147.2

Q ss_pred             CceEEEEEeecCCCceEEEEE-------ccCCCcEEEEeccccccccCccccceee--eeeccccceEEEEEeCC-CCEE
Q 036314           65 GAVSSVNIIKSDGLKYVTVAT-------ASKDQTLRLWKFDAEELVNHPKKIRSFK--ILRGHKASVHSIAAETS-GNMV  134 (347)
Q Consensus        65 ~~V~~v~~~~~~~~~~~~l~s-------~s~Dg~v~~wd~~~~~~~~~~~~~~~~~--~~~~h~~~V~~v~~s~~-~~~l  134 (347)
                      ....+++|.+++    ..+++       +..++.|.+||..+++..       .+.  ...++...+.+++++++ |+++
T Consensus        18 ~~~~~~~~~~~g----~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~-------~~~~~~~~~~~~~~~~i~~~~~~g~l~   86 (314)
T 1pjx_A           18 PGAEGPVFDKNG----DFYIVAPEVEVNGKPAGEILRIDLKTGKKT-------VICKPEVNGYGGIPAGCQCDRDANQLF   86 (314)
T ss_dssp             TTCEEEEECTTS----CEEEEETTCEETTEECCEEEEECTTTCCEE-------EEECCEETTEECCEEEEEECSSSSEEE
T ss_pred             CCccCceECCCC----CEEEEEeccccCCCCCCEEEEEeCCCCcEE-------EEEecccCCCCCCCceEEEecCCCcEE
Confidence            345678887533    24556       678899999997665421       110  01125567889999999 7655


Q ss_pred             EEeeCCCcEEEEecCCCCCCCccceeeeccCCCcccccccccccccccc-CCccceEEEEe-CCCCeEEEEecC------
Q 036314          135 CSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLV-GHTQCVSSVVW-PQQETIYSASWD------  206 (347)
Q Consensus       135 ~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~-~~~~~l~s~s~d------  206 (347)
                      ++.. ...|.+||.. +...    ...                 ..... .+...+.++++ +++..+++...+      
T Consensus        87 v~~~-~~~l~~~d~~-g~~~----~~~-----------------~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~  143 (314)
T 1pjx_A           87 VADM-RLGLLVVQTD-GTFE----EIA-----------------KKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPAD  143 (314)
T ss_dssp             EEET-TTEEEEEETT-SCEE----ECC-----------------SBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSC
T ss_pred             EEEC-CCCEEEEeCC-CCEE----EEE-----------------eccCCCccccCCcCEEECCCCCEEEEecCccccccc
Confidence            5544 4478888865 3210    000                 00000 01133566776 455555555444      


Q ss_pred             ---------CcEEEEECCCCceeeeeeeCeeeEEEEee----CCCCcEEEEecCCCcEEEEeCCCCCCCC---CeEEecC
Q 036314          207 ---------HSVRTWDVEMGKDLSDIFCGKALNCIDIG----GEGSALIAAGGSDPILRIWDPRKPGTSA---PVFQFSS  270 (347)
Q Consensus       207 ---------g~v~vwd~~~~~~~~~~~~~~~~~~~~~~----~~~~~~la~~~~d~~i~iwd~~~~~~~~---~~~~~~~  270 (347)
                               +.|..||.. ++.............+++.    +++..++++...++.|.+||+...+...   ....+.+
T Consensus       144 ~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~  222 (314)
T 1pjx_A          144 YTRSMQEKFGSIYCFTTD-GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPG  222 (314)
T ss_dssp             CCBTTSSSCEEEEEECTT-SCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCC
T ss_pred             ccccccCCCCeEEEECCC-CCEEEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCC
Confidence                     467777765 4432222222234567776    6554556666678999999975211110   1223344


Q ss_pred             CC-CCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecCCCCeEEEEeecC-CC-EEEEccCCceEEEeec
Q 036314          271 HN-SWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKVLCADWWR-GD-SVISGGVDSKLCVSSG  343 (347)
Q Consensus       271 h~-~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~-~~-~l~s~s~D~~v~vw~~  343 (347)
                      +. .....+++++++. +.++...++.|.+||.++++.+..+..+...+.+++|.+ |+ .+++...++.|..++.
T Consensus       223 ~~~~~p~~i~~d~~G~-l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~  297 (314)
T 1pjx_A          223 THEGGADGMDFDEDNN-LLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEW  297 (314)
T ss_dssp             CSSCEEEEEEEBTTCC-EEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEEC
T ss_pred             CCCCCCCceEECCCCC-EEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeC
Confidence            43 5678899999884 566666788999999987777777766767899999964 66 4556666788888764

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.33  E-value=1.2e-09  Score=95.10  Aligned_cols=238  Identities=12%  Similarity=0.070  Sum_probs=141.1

Q ss_pred             ceeeccCC-CCCEEEE-------EecCCeEEEEcC-CCeEEEEee----ccCCceEEEEEeecCCCceEEEEEccCCCcE
Q 036314           26 WVSAVDGS-NPGFILT-------GCYDNLGRVWKA-GGVCTHILE----GHCGAVSSVNIIKSDGLKYVTVATASKDQTL   92 (347)
Q Consensus        26 ~v~~~~~~-~~~~l~s-------g~~d~~i~iw~~-~~~~~~~l~----~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v   92 (347)
                      ...+++++ ++.++++       +..++.|..|+. .+.......    ++...+.++.+.++++   ..+++.. .+.|
T Consensus        19 ~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g---~l~v~~~-~~~l   94 (314)
T 1pjx_A           19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDAN---QLFVADM-RLGL   94 (314)
T ss_dssp             TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSS---EEEEEET-TTEE
T ss_pred             CccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCC---cEEEEEC-CCCE
Confidence            44566665 4566777       678899999996 454433222    2556788998887412   3344333 4478


Q ss_pred             EEEeccccccccCccccceeeeee-ccccceEEEEEeCCCCEEEEeeCC---------------CcEEEEecCCCCCCCc
Q 036314           93 RLWKFDAEELVNHPKKIRSFKILR-GHKASVHSIAAETSGNMVCSGSWD---------------CTISLWRTNDSDAAGN  156 (347)
Q Consensus        93 ~~wd~~~~~~~~~~~~~~~~~~~~-~h~~~V~~v~~s~~~~~l~sgs~D---------------g~I~iwd~~~~~~~~~  156 (347)
                      .+||.+ ++.....     ..... .+...+.+++++++|+++++...+               +.|..|+.. ..    
T Consensus        95 ~~~d~~-g~~~~~~-----~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~----  163 (314)
T 1pjx_A           95 LVVQTD-GTFEEIA-----KKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQ----  163 (314)
T ss_dssp             EEEETT-SCEEECC-----SBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SC----
T ss_pred             EEEeCC-CCEEEEE-----eccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CC----
Confidence            899987 5431110     00000 122457889999999988877655               445555432 11    


Q ss_pred             cceeeeccCCCccccccccccccccccCCccceEEEEeC-----CCCeEEEE-ecCCcEEEEECC-CCce-----eeeee
Q 036314          157 QVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWP-----QQETIYSA-SWDHSVRTWDVE-MGKD-----LSDIF  224 (347)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-----~~~~l~s~-s~dg~v~vwd~~-~~~~-----~~~~~  224 (347)
                      .                      ..+..+......+++.     +++.++.+ ..++.|.+||+. .+..     ...+.
T Consensus       164 ~----------------------~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~  221 (314)
T 1pjx_A          164 M----------------------IQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIP  221 (314)
T ss_dssp             E----------------------EEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECC
T ss_pred             E----------------------EEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECC
Confidence            0                      0001111223455553     44455444 567899999976 3431     11111


Q ss_pred             eC--eeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEc
Q 036314          225 CG--KALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDL  302 (347)
Q Consensus       225 ~~--~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~  302 (347)
                      ..  ..+..++++++ +.+.++...++.|.+||.+...   ....+..+...+.+++|+|++..+.++...++.|..|++
T Consensus       222 ~~~~~~p~~i~~d~~-G~l~v~~~~~~~i~~~d~~~g~---~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~  297 (314)
T 1pjx_A          222 GTHEGGADGMDFDED-NNLLVANWGSSHIEVFGPDGGQ---PKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEW  297 (314)
T ss_dssp             CCSSCEEEEEEEBTT-CCEEEEEETTTEEEEECTTCBS---CSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEEC
T ss_pred             CCCCCCCCceEECCC-CCEEEEEcCCCEEEEEcCCCCc---EeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeC
Confidence            11  33566777665 4566666668899999976322   234455566789999999998755666667789999998


Q ss_pred             CC
Q 036314          303 RT  304 (347)
Q Consensus       303 ~~  304 (347)
                      ..
T Consensus       298 ~~  299 (314)
T 1pjx_A          298 QR  299 (314)
T ss_dssp             SS
T ss_pred             CC
Confidence            75

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.33  E-value=3.2e-11  Score=107.87  Aligned_cols=179  Identities=12%  Similarity=0.018  Sum_probs=121.0

Q ss_pred             ceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEeCCCCeE
Q 036314          121 SVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWPQQETI  200 (347)
Q Consensus       121 ~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l  200 (347)
                      +++.+++++...++++|+.| .+++|++.+....     .......       +  +.. ....+.. |..++| ++..|
T Consensus        39 ~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~-----~~~~~~~-------~--~~~-~~~~lp~-V~~l~f-d~~~L  100 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGS-KAVVGELQLLRDH-----ITSDSTP-------L--TFK-WEKEIPD-VIFVCF-HGDQV  100 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHH-----HHSSSCC-------C--CCS-EEEECTT-EEEEEE-ETTEE
T ss_pred             cccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhh-----hcccccc-------c--cce-EEeeCCC-eeEEEE-CCCEE
Confidence            57889999999999999998 5556986532100     0000000       0  011 1123455 999999 88888


Q ss_pred             EEEecCCcEEEEECCCCceeeeee-eCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEE
Q 036314          201 YSASWDHSVRTWDVEMGKDLSDIF-CGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACK  279 (347)
Q Consensus       201 ~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~  279 (347)
                      +.+ .++.|++||+++......+. ....+..+.+.++  + ++++..||.|.+||+....    ...   +...|.+++
T Consensus       101 ~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p--~-~av~~~dG~L~v~dl~~~~----~~~---~~~~Vs~v~  169 (388)
T 1xip_A          101 LVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNN--T-LVILNSVNDLSALDLRTKS----TKQ---LAQNVTSFD  169 (388)
T ss_dssp             EEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSS--E-EEEEETTSEEEEEETTTCC----EEE---EEESEEEEE
T ss_pred             EEE-cCCcEEEEEchhhhccCccceeecceeeEEecCC--C-EEEEECCCCEEEEEccCCc----ccc---ccCCceEEE
Confidence            887 88999999997755433332 2334555555443  2 7778899999999997432    112   456899999


Q ss_pred             eCCCCCeEEEEEeCCCcEEEEEcCCCcc--ceee------c---CCCCeEEEEeec-CCCEEEE
Q 036314          280 WHNKSWFHLISASYDGKVMLWDLRTAWP--LSVI------D---SHKDKVLCADWW-RGDSVIS  331 (347)
Q Consensus       280 ~s~~~~~~l~s~s~D~~i~lwd~~~~~~--~~~~------~---~h~~~v~~~~~~-~~~~l~s  331 (347)
                      |+|+|   ++.|..||++++|+.+..+.  .+++      .   +|...|.++.|. ++.++++
T Consensus       170 WSpkG---~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~  230 (388)
T 1xip_A          170 VTNSQ---LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV  230 (388)
T ss_dssp             ECSSE---EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred             EcCCc---eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence            99998   67799999999999986653  4445      3   478899999996 4555554

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.31  E-value=2.7e-09  Score=100.70  Aligned_cols=275  Identities=12%  Similarity=0.015  Sum_probs=165.5

Q ss_pred             CEEEEEecCCeEEEEcCC-CeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEecc--ccccccCcccccee
Q 036314           36 GFILTGCYDNLGRVWKAG-GVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFD--AEELVNHPKKIRSF  112 (347)
Q Consensus        36 ~~l~sg~~d~~i~iw~~~-~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~--~~~~~~~~~~~~~~  112 (347)
                      .++++...+++|.++|.. ++.+..+... ..+..+.|+|++    ++|++++.|+.|.+||+.  +.+         ..
T Consensus       168 ~~~V~~~~~~~V~viD~~t~~v~~~i~~g-~~p~~v~~SpDG----r~lyv~~~dg~V~viD~~~~t~~---------~v  233 (567)
T 1qks_A          168 LFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASG----RYLFVIGRDGKVNMIDLWMKEPT---------TV  233 (567)
T ss_dssp             EEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTS----CEEEEEETTSEEEEEETTSSSCC---------EE
T ss_pred             eEEEEeCCCCeEEEEECCCCeEEEEEeCC-CCccceEECCCC----CEEEEEcCCCeEEEEECCCCCCc---------Ee
Confidence            367788888999999975 5666666533 346689999854    367788899999999985  332         23


Q ss_pred             eeeeccccceEEEEEe----CCCCEEEEeeC-CCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCcc
Q 036314          113 KILRGHKASVHSIAAE----TSGNMVCSGSW-DCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQ  187 (347)
Q Consensus       113 ~~~~~h~~~V~~v~~s----~~~~~l~sgs~-Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  187 (347)
                      ..+.... ....++|+    |||++++.++. +++|.++|..+.+...... ..              +........|..
T Consensus       234 ~~i~~G~-~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~-~~--------------~~~~~~~~~~p~  297 (567)
T 1qks_A          234 AEIKIGS-EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQS-TR--------------GMTYDEQEYHPE  297 (567)
T ss_dssp             EEEECCS-EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEE-CC--------------EECTTTCCEESC
T ss_pred             EEEecCC-CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEe-cc--------------ccccccccccCC
Confidence            3343323 35789999    69998876654 5999999976643211000 00              000000011212


Q ss_pred             -ceEEEEeC-CCC-eEEEEecCCcEEEEECCCCcee--eeeeeCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCC
Q 036314          188 -CVSSVVWP-QQE-TIYSASWDHSVRTWDVEMGKDL--SDIFCGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTS  262 (347)
Q Consensus       188 -~v~~~~~~-~~~-~l~s~s~dg~v~vwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~  262 (347)
                       .+..+..+ ++. .+++...+|.|.++|......+  ..+........+.|++++..++++...+++|.++|+....  
T Consensus       298 ~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~k--  375 (567)
T 1qks_A          298 PRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGK--  375 (567)
T ss_dssp             CCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTE--
T ss_pred             CceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCc--
Confidence             34455543 333 4566677799999998765422  2222333455677888777677777778999999987432  


Q ss_pred             CCeEEec-----CCCCCeeEEEeCCCCCeEEEEEe-CCCcEEEEEcCC-------CccceeecCCCCeEEEEeecC-CCE
Q 036314          263 APVFQFS-----SHNSWISACKWHNKSWFHLISAS-YDGKVMLWDLRT-------AWPLSVIDSHKDKVLCADWWR-GDS  328 (347)
Q Consensus       263 ~~~~~~~-----~h~~~v~~v~~s~~~~~~l~s~s-~D~~i~lwd~~~-------~~~~~~~~~h~~~v~~~~~~~-~~~  328 (347)
                       ....+.     .|......+ +.|++....+++. .+++|.++|.++       .+.++++......-..+..+| +++
T Consensus       376 -l~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~  453 (567)
T 1qks_A          376 -LVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQY  453 (567)
T ss_dssp             -EEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSE
T ss_pred             -EEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCe
Confidence             122222     243322222 5787655556654 468999999987       455666654333323455665 455


Q ss_pred             EEEcc---C----CceEEEeecc
Q 036314          329 VISGG---V----DSKLCVSSGV  344 (347)
Q Consensus       329 l~s~s---~----D~~v~vw~~~  344 (347)
                      |....   .    .++|.|++..
T Consensus       454 l~v~~~~~~~~~~~~~v~v~d~~  476 (567)
T 1qks_A          454 LYVDATLNPEAEISGSVAVFDIK  476 (567)
T ss_dssp             EEEECTTCSSHHHHTCEEEEEGG
T ss_pred             EEEecCCCCCcccCceEEEEECC
Confidence            44322   1    3578887754

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.28  E-value=4.6e-08  Score=84.12  Aligned_cols=270  Identities=10%  Similarity=-0.039  Sum_probs=164.6

Q ss_pred             CCceeeccCC-CCCEEEEEecCCeEEEEcCCCeEEE-EeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccc
Q 036314           24 DDWVSAVDGS-NPGFILTGCYDNLGRVWKAGGVCTH-ILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEE  101 (347)
Q Consensus        24 ~~~v~~~~~~-~~~~l~sg~~d~~i~iw~~~~~~~~-~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~  101 (347)
                      ...+.++... ++.+.++...++.|..|+..+.... .+..+...+.++.+.+++    ...++...++.|..||.. ++
T Consensus        19 ~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g----~l~v~~~~~~~v~~~d~~-g~   93 (300)
T 2qc5_A           19 DSGPYGITSSEDGKVWFTQHKANKISSLDQSGRIKEFEVPTPDAKVMCLIVSSLG----DIWFTENGANKIGKLSKK-GG   93 (300)
T ss_dssp             TCCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEEECTTS----CEEEEETTTTEEEEECTT-SC
T ss_pred             CCCcceeeECCCCCEEEEcCCCCeEEEECCCCceEEEECCCCCCcceeEEECCCC----CEEEEecCCCeEEEECCC-CC
Confidence            3456677766 4566676667899999997755433 233344667888887643    245555667889999976 43


Q ss_pred             cccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCcccccccccccccc
Q 036314          102 LVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAIST  181 (347)
Q Consensus       102 ~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (347)
                      ..       . ..+......+.++++.++|+++++...++.|..|+.. +...                        ...
T Consensus        94 ~~-------~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~------------------------~~~  140 (300)
T 2qc5_A           94 FT-------E-YPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIY------------------------EYD  140 (300)
T ss_dssp             EE-------E-EECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEE------------------------EEE
T ss_pred             eE-------E-ecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEE------------------------Ecc
Confidence            21       1 1122234568899999999988887778889998764 2110                        000


Q ss_pred             ccCCccceEEEEe-CCCCeEEEEecCCcEEEEECCCCceeeeeee---CeeeEEEEeeCCCCcEEEEecCCCcEEEEeCC
Q 036314          182 LVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFC---GKALNCIDIGGEGSALIAAGGSDPILRIWDPR  257 (347)
Q Consensus       182 ~~~h~~~v~~~~~-~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~  257 (347)
                      +.........+++ ++++.+++...++.|..+|. +++... +..   ...+..+.+.++ +.+.++....+.|..||..
T Consensus       141 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~d~~-g~l~v~~~~~~~i~~~~~~  217 (300)
T 2qc5_A          141 LPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEE-YPLPTNAAAPVGITSGND-GALWFVEIMGNKIGRITTT  217 (300)
T ss_dssp             CSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EECSSTTCCEEEEEECTT-SSEEEEETTTTEEEEECTT
T ss_pred             CCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEE-eeCCCCCCCcceEEECCC-CCEEEEccCCCEEEEEcCC
Confidence            1112234567776 45565555555788999998 554332 221   224567777664 4666666667789999973


Q ss_pred             CCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccc-eeecCCCCeEEEEeecC-CCEEEEccCC
Q 036314          258 KPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPL-SVIDSHKDKVLCADWWR-GDSVISGGVD  335 (347)
Q Consensus       258 ~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~-~~~~~h~~~v~~~~~~~-~~~l~s~s~D  335 (347)
                        +.. ....+..+...+.++++++++. +.++...++.|..||.. ++.. ..+......+.++.+.+ |+..++.. .
T Consensus       218 --g~~-~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~  291 (300)
T 2qc5_A          218 --GEI-SEYDIPTPNARPHAITAGKNSE-IWFTEWGANQIGRITND-NTIQEYQLQTENAEPHGITFGKDGSVWFALK-C  291 (300)
T ss_dssp             --CCE-EEEECSSTTCCEEEEEECSTTC-EEEEETTTTEEEEECTT-SCEEEEECCSTTCCCCCEEECTTSCEEEECS-S
T ss_pred             --CcE-EEEECCCCCCCceEEEECCCCC-EEEeccCCCeEEEECCC-CcEEEEECCccCCccceeEeCCCCCEEEEcc-C
Confidence              111 1222334556788999999975 45555567899999984 4322 12232345677777764 55555544 4


Q ss_pred             ceEEEe
Q 036314          336 SKLCVS  341 (347)
Q Consensus       336 ~~v~vw  341 (347)
                       .|...
T Consensus       292 -~i~~~  296 (300)
T 2qc5_A          292 -KIGKL  296 (300)
T ss_dssp             -EEEEE
T ss_pred             -ceEEe
Confidence             44443

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.28  E-value=7.3e-09  Score=94.06  Aligned_cols=232  Identities=12%  Similarity=0.088  Sum_probs=148.2

Q ss_pred             ceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCC--cE
Q 036314           66 AVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDC--TI  143 (347)
Q Consensus        66 ~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg--~I  143 (347)
                      ....|+|.+++    ..+++...++.|++||.+++++.         ....... ... ++|+++++.|+.+..++  .|
T Consensus       132 ~P~~la~d~~g----~lyv~d~~~~~I~~id~~~g~~~---------~~~~~~~-~~~-ia~~~~g~~l~~~d~~~~~~I  196 (409)
T 3hrp_A          132 YMWGIAAVGNN----TVLAYQRDDPRVRLISVDDNKVT---------TVHPGFK-GGK-PAVTKDKQRVYSIGWEGTHTV  196 (409)
T ss_dssp             CEEEEEECSTT----EEEEEETTTTEEEEEETTTTEEE---------EEEETCC-BCB-CEECTTSSEEEEEBSSTTCEE
T ss_pred             CceEEEEeCCC----CEEEEecCCCcEEEEECCCCEEE---------EeeccCC-CCc-eeEecCCCcEEEEecCCCceE
Confidence            45678887632    45677777899999998765431         1122222 233 89999999998888876  67


Q ss_pred             EEEecCCCCCCCccceeeeccCCCccccccccccccccccC-CccceEEEEeCC-CCeEEEEecCCcEEEEECCCCceee
Q 036314          144 SLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVG-HTQCVSSVVWPQ-QETIYSASWDHSVRTWDVEMGKDLS  221 (347)
Q Consensus       144 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~-~~~l~s~s~dg~v~vwd~~~~~~~~  221 (347)
                      .+++.......   .                   .+..+.. ......++++.. +..|+.+..++.|..||..++... 
T Consensus       197 ~~~d~~~~~~~---~-------------------~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~-  253 (409)
T 3hrp_A          197 YVYMKASGWAP---T-------------------RIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVT-  253 (409)
T ss_dssp             EEEEGGGTTCE---E-------------------EEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEE-
T ss_pred             EEEEcCCCcee---E-------------------EeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEE-
Confidence            77775432100   0                   0000001 122344566643 667766777889999998876532 


Q ss_pred             ee----ee-Ceee--E-EEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCC---------------CCeeEE
Q 036314          222 DI----FC-GKAL--N-CIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHN---------------SWISAC  278 (347)
Q Consensus       222 ~~----~~-~~~~--~-~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~---------------~~v~~v  278 (347)
                      .+    .. ....  . .+++++.++.++++...++.|+.||...  .   ...+.++.               .....+
T Consensus       254 ~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g--~---~~~~~g~~~~~g~~dg~~~~~~~~~P~gi  328 (409)
T 3hrp_A          254 LIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDG--E---CEWFCGSATQKTVQDGLREEALFAQPNGM  328 (409)
T ss_dssp             EEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTC--C---EEEEEECTTCCSCBCEEGGGCBCSSEEEE
T ss_pred             EEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCC--C---EEEEEeCCCCCCcCCCcccccEeCCCeEE
Confidence            22    11 1111  2 7889886777888888889999998753  1   23333332               457789


Q ss_pred             EeCCCCCeEEEEEe-CCCcEEEEEcCCCccceeecCC---------------CCeEEEEeecC-CCEEEEccCCceEEEe
Q 036314          279 KWHNKSWFHLISAS-YDGKVMLWDLRTAWPLSVIDSH---------------KDKVLCADWWR-GDSVISGGVDSKLCVS  341 (347)
Q Consensus       279 ~~s~~~~~~l~s~s-~D~~i~lwd~~~~~~~~~~~~h---------------~~~v~~~~~~~-~~~l~s~s~D~~v~vw  341 (347)
                      +++|++. ++++-+ .+++|+.||+.+++ +.++.++               -....++++.+ |..+++-..+++|+..
T Consensus       329 a~d~dG~-lyvad~~~~~~I~~~~~~~G~-v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i  406 (409)
T 3hrp_A          329 TVDEDGN-FYIVDGFKGYCLRKLDILDGY-VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKY  406 (409)
T ss_dssp             EECTTCC-EEEEETTTTCEEEEEETTTTE-EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEE
T ss_pred             EEeCCCC-EEEEeCCCCCEEEEEECCCCE-EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEE
Confidence            9999986 677777 88999999977665 4444443               13578888875 6677777778888765


Q ss_pred             e
Q 036314          342 S  342 (347)
Q Consensus       342 ~  342 (347)
                      +
T Consensus       407 ~  407 (409)
T 3hrp_A          407 A  407 (409)
T ss_dssp             E
T ss_pred             E
Confidence            4

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.25  E-value=4.9e-10  Score=100.17  Aligned_cols=181  Identities=10%  Similarity=0.053  Sum_probs=120.5

Q ss_pred             ceEEEEEeecCCCceEEEEEccCCCcEEEEeccccc--cccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcE
Q 036314           66 AVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEE--LVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTI  143 (347)
Q Consensus        66 ~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~--~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I  143 (347)
                      .++.+++++..+    .+++|+.| .+++|+++..+  ........++.. ...+.. |+.++|  |+++|+.+ .++.|
T Consensus        39 ~~nlLais~~~g----ll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~-~~~lp~-V~~l~f--d~~~L~v~-~~~~l  108 (388)
T 1xip_A           39 SLQNLDISNSKS----LFVAASGS-KAVVGELQLLRDHITSDSTPLTFKW-EKEIPD-VIFVCF--HGDQVLVS-TRNAL  108 (388)
T ss_dssp             CCBCEEEETTTT----EEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSE-EEECTT-EEEEEE--ETTEEEEE-ESSEE
T ss_pred             cccEEEEcCCCC----EEEEeCCC-EEEEEEhhHhhhhhccccccccceE-EeeCCC-eeEEEE--CCCEEEEE-cCCcE
Confidence            578899988655    57888887 57779976443  100111112211 223566 999999  88999988 89999


Q ss_pred             EEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEeCCCCeEEEEecCCcEEEEECCCCceeeee
Q 036314          144 SLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWPQQETIYSASWDHSVRTWDVEMGKDLSDI  223 (347)
Q Consensus       144 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~  223 (347)
                      ++||+.+...                         ......|...+.++.+... .++.++.||.|.+||+.++....  
T Consensus       109 ~v~dv~sl~~-------------------------~~~~~~~~~~v~~i~~~~p-~~av~~~dG~L~v~dl~~~~~~~--  160 (388)
T 1xip_A          109 YSLDLEELSE-------------------------FRTVTSFEKPVFQLKNVNN-TLVILNSVNDLSALDLRTKSTKQ--  160 (388)
T ss_dssp             EEEESSSTTC-------------------------EEEEEECSSCEEEEEECSS-EEEEEETTSEEEEEETTTCCEEE--
T ss_pred             EEEEchhhhc-------------------------cCccceeecceeeEEecCC-CEEEEECCCCEEEEEccCCcccc--
Confidence            9999875421                         1112234455666665322 38889999999999998776532  


Q ss_pred             eeCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEe------c---CCCCCeeEEEeCCCCCeEEEE
Q 036314          224 FCGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQF------S---SHNSWISACKWHNKSWFHLIS  290 (347)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~------~---~h~~~v~~v~~s~~~~~~l~s  290 (347)
                       ....+.|++|++.+   ++.|..||++++|++.... .....++      .   +|...|.++.|.+++.. |++
T Consensus       161 -~~~~Vs~v~WSpkG---~~vg~~dg~i~~~~~~~~~-~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~f-lv~  230 (388)
T 1xip_A          161 -LAQNVTSFDVTNSQ---LAVLLKDRSFQSFAWRNGE-MEKQFEFSLPSELEELPVEEYSPLSVTILSPQDF-LAV  230 (388)
T ss_dssp             -EEESEEEEEECSSE---EEEEETTSCEEEEEEETTE-EEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEE-EEE
T ss_pred             -ccCCceEEEEcCCc---eEEEEcCCcEEEEcCCCcc-ccccceecCCcccccccCCCeeEEEEEEecCCeE-EEE
Confidence             34568999998765   5678889999999875321 0002234      2   47788999999998753 444

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.23  E-value=4.7e-08  Score=84.04  Aligned_cols=238  Identities=11%  Similarity=0.002  Sum_probs=149.9

Q ss_pred             eeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeC
Q 036314           60 LEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSW  139 (347)
Q Consensus        60 l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~  139 (347)
                      +..+...+.++++.+++.    ..++...++.|.+||.. ++..       . ..+..+...+.+++++++|.++++...
T Consensus        10 ~~~~~~~~~~i~~d~~g~----l~v~~~~~~~v~~~d~~-~~~~-------~-~~~~~~~~~~~~i~~~~~g~l~v~~~~   76 (299)
T 2z2n_A           10 LTNQDTGPYGITVSDKGK----VWITQHKANMISCINLD-GKIT-------E-YPLPTPDAKVMCLTISSDGEVWFTENA   76 (299)
T ss_dssp             CCSSSCCEEEEEECTTSC----EEEEETTTTEEEEECTT-CCEE-------E-EECSSTTCCEEEEEECTTSCEEEEETT
T ss_pred             CCCcCCCccceEECCCCC----EEEEecCCCcEEEEcCC-CCeE-------E-ecCCcccCceeeEEECCCCCEEEeCCC
Confidence            344556788998877432    45555557899999976 4321       1 111234567899999999998888777


Q ss_pred             CCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEeC-CCCeEEEEecCCcEEEEECCCCc
Q 036314          140 DCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWP-QQETIYSASWDHSVRTWDVEMGK  218 (347)
Q Consensus       140 Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~l~s~s~dg~v~vwd~~~~~  218 (347)
                      ++.|..|+... .    ..                    ...+......+.++++. ++..+++...++.|.+||. +++
T Consensus        77 ~~~i~~~~~~g-~----~~--------------------~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~  130 (299)
T 2z2n_A           77 ANKIGRITKKG-I----IK--------------------EYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGK  130 (299)
T ss_dssp             TTEEEEECTTS-C----EE--------------------EEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCC
T ss_pred             CCeEEEECCCC-c----EE--------------------EEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCC
Confidence            88999998641 1    00                    00011122346677774 5555666666789999998 554


Q ss_pred             eeeeee--eCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCc
Q 036314          219 DLSDIF--CGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGK  296 (347)
Q Consensus       219 ~~~~~~--~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~  296 (347)
                      ......  ....+..+.+.+++ .+.++...++.|..||. . +.. ....+..+...+..+++.+++. +.++...++.
T Consensus       131 ~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~-~-g~~-~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~  205 (299)
T 2z2n_A          131 IREYELPNKGSYPSFITLGSDN-ALWFTENQNNAIGRITE-S-GDI-TEFKIPTPASGPVGITKGNDDA-LWFVEIIGNK  205 (299)
T ss_dssp             EEEEECSSTTCCEEEEEECTTS-CEEEEETTTTEEEEECT-T-CCE-EEEECSSTTCCEEEEEECTTSS-EEEEETTTTE
T ss_pred             EEEecCCCCCCCCceEEEcCCC-CEEEEeCCCCEEEEEcC-C-CcE-EEeeCCCCCCcceeEEECCCCC-EEEEccCCce
Confidence            322111  12346777886554 56666666789999997 3 221 1122334455688999999875 4565566789


Q ss_pred             EEEEEcCCCccce-eecCCCCeEEEEeec-CCCEEEEccCCceEEEee
Q 036314          297 VMLWDLRTAWPLS-VIDSHKDKVLCADWW-RGDSVISGGVDSKLCVSS  342 (347)
Q Consensus       297 i~lwd~~~~~~~~-~~~~h~~~v~~~~~~-~~~~l~s~s~D~~v~vw~  342 (347)
                      |.+||. +++... .+..+...+.++.+. +|+.+++...++.|.+++
T Consensus       206 i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d  252 (299)
T 2z2n_A          206 IGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLT  252 (299)
T ss_dssp             EEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEE
T ss_pred             EEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEEC
Confidence            999999 554322 123345678899986 466666655677788776

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.20  E-value=1.6e-07  Score=84.07  Aligned_cols=258  Identities=11%  Similarity=-0.009  Sum_probs=150.0

Q ss_pred             eEEEEcCC-CeEEEEeeccCCceEEEEEeecCCCceEEEEEcc----------CCCcEEEEeccccccccCccccceeee
Q 036314           46 LGRVWKAG-GVCTHILEGHCGAVSSVNIIKSDGLKYVTVATAS----------KDQTLRLWKFDAEELVNHPKKIRSFKI  114 (347)
Q Consensus        46 ~i~iw~~~-~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s----------~Dg~v~~wd~~~~~~~~~~~~~~~~~~  114 (347)
                      +|.++|.. ++.+..+..-..+  .++++|++.    .|+.+.          .++.|.+||..+.+......-... ..
T Consensus        48 ~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~----~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~-~~  120 (373)
T 2mad_H           48 QQWVLDAGSGSILGHVNGGFLP--NPVAAHSGS----EFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDA-PR  120 (373)
T ss_pred             EEEEEECCCCeEEEEecCCCCC--CeEECCCCC----EEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCc-cc
Confidence            88999974 5555555533333  899999553    455443          467899999876543211000000 00


Q ss_pred             eeccccceEEEEEeCCCCEEEEeeC--CCcEEEEecCCCCCCCccceeeeccCCCcccccccccccccc-ccCCccceEE
Q 036314          115 LRGHKASVHSIAAETSGNMVCSGSW--DCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAIST-LVGHTQCVSS  191 (347)
Q Consensus       115 ~~~h~~~V~~v~~s~~~~~l~sgs~--Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~  191 (347)
                      +. +......++++|||++|+.++.  +++|.++| .+...                         +.. +.. ..++  
T Consensus       121 ~~-~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~-------------------------~~~~i~~-~~~~--  170 (373)
T 2mad_H          121 FD-VGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSS-------------------------DDQLLSS-PTCY--  170 (373)
T ss_pred             cc-cCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCE-------------------------EeEEcCC-CceE--
Confidence            00 0122457899999999998874  57899999 76432                         111 110 1111  


Q ss_pred             EEeCCC-CeEEEEecCCcEEEEECCCCceeeeee-----eC-eee-EEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCC
Q 036314          192 VVWPQQ-ETIYSASWDHSVRTWDVEMGKDLSDIF-----CG-KAL-NCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSA  263 (347)
Q Consensus       192 ~~~~~~-~~l~s~s~dg~v~vwd~~~~~~~~~~~-----~~-~~~-~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~  263 (347)
                      ..++.+ ..+++.+.||.+.++|. +++......     .. .++ ....+.+.++.++... ..+.+.+.|+.... ..
T Consensus       171 ~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-~~~~v~vid~~~~~-~~  247 (373)
T 2mad_H          171 HIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPV-YSGKILQADISAAG-AT  247 (373)
T ss_pred             EEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEc-CCceEEEEeccCCc-ce
Confidence            123443 35667788999999999 776552221     11 111 1122333344444443 57889999986321 11


Q ss_pred             CeEEecC----------CCCCeeEEEeCCCCCeEEEEEe---------CCCcEEEEEcCCCccceeecCCCCeEEEEeec
Q 036314          264 PVFQFSS----------HNSWISACKWHNKSWFHLISAS---------YDGKVMLWDLRTAWPLSVIDSHKDKVLCADWW  324 (347)
Q Consensus       264 ~~~~~~~----------h~~~v~~v~~s~~~~~~l~s~s---------~D~~i~lwd~~~~~~~~~~~~h~~~v~~~~~~  324 (347)
                      ....+.-          .......+.++|++.++.++..         .++.|.++|..+++.+.++.. .....++.|+
T Consensus       248 v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~-g~~p~~i~~s  326 (373)
T 2mad_H          248 NKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL-GHDVDAISVA  326 (373)
T ss_pred             EeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEEC-CCCcCeEEEC
Confidence            1111110          0122334778999876555443         235799999999988888753 3357899998


Q ss_pred             C-CC-EEEEcc-CCceEEEeecc
Q 036314          325 R-GD-SVISGG-VDSKLCVSSGV  344 (347)
Q Consensus       325 ~-~~-~l~s~s-~D~~v~vw~~~  344 (347)
                      + |+ ++.++. .+++|.|++.-
T Consensus       327 ~Dg~~~l~v~~~~~~~V~ViD~~  349 (373)
T 2mad_H          327 QDGGPDLYALSAGTEVLHIYDAG  349 (373)
T ss_pred             CCCCeEEEEEcCCCCeEEEEECC
Confidence            5 66 577766 58999999865

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.18  E-value=6.1e-08  Score=83.95  Aligned_cols=219  Identities=11%  Similarity=0.053  Sum_probs=135.7

Q ss_pred             ceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEE
Q 036314           66 AVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISL  145 (347)
Q Consensus        66 ~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~i  145 (347)
                      ---+..|+++.+   ..+++...++.|..||..+++.          ..+ .+...+.+++++++|+++++.  +..|.+
T Consensus        14 ~~Egp~w~~~~~---~l~~~d~~~~~i~~~d~~~~~~----------~~~-~~~~~~~~i~~~~dG~l~v~~--~~~l~~   77 (297)
T 3g4e_A           14 CGESPVWEEVSN---SLLFVDIPAKKVCRWDSFTKQV----------QRV-TMDAPVSSVALRQSGGYVATI--GTKFCA   77 (297)
T ss_dssp             BEEEEEEETTTT---EEEEEETTTTEEEEEETTTCCE----------EEE-ECSSCEEEEEEBTTSSEEEEE--TTEEEE
T ss_pred             cccCCeEECCCC---EEEEEECCCCEEEEEECCCCcE----------EEE-eCCCceEEEEECCCCCEEEEE--CCeEEE
Confidence            344677877443   3567778889999999876532          112 234678999999999966643  568889


Q ss_pred             EecCCCCCCCccceeeeccCCCcccccccccccccccc--CCccceEEEEe-CCCCeEEEEecC---------CcEEEEE
Q 036314          146 WRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLV--GHTQCVSSVVW-PQQETIYSASWD---------HSVRTWD  213 (347)
Q Consensus       146 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~~~~-~~~~~l~s~s~d---------g~v~vwd  213 (347)
                      ||..+....                       .+....  .....++.+++ ++++.+++...+         ..-.||.
T Consensus        78 ~d~~~g~~~-----------------------~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~  134 (297)
T 3g4e_A           78 LNWKEQSAV-----------------------VLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYS  134 (297)
T ss_dssp             EETTTTEEE-----------------------EEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEE
T ss_pred             EECCCCcEE-----------------------EEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEE
Confidence            987643210                       000000  01223566776 456654443221         2345555


Q ss_pred             CCC-CceeeeeeeCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCC-CCCCCC---CeEEecCCCCCeeEEEeCCCCCeEE
Q 036314          214 VEM-GKDLSDIFCGKALNCIDIGGEGSALIAAGGSDPILRIWDPR-KPGTSA---PVFQFSSHNSWISACKWHNKSWFHL  288 (347)
Q Consensus       214 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~-~~~~~~---~~~~~~~h~~~v~~v~~s~~~~~~l  288 (347)
                      +.. ++...........+.+++++++..++++.+.++.|..||+. ..+...   ....+..+......+++.++|. +.
T Consensus       135 ~d~~g~~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~-lw  213 (297)
T 3g4e_A          135 LFPDHHVKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGK-LW  213 (297)
T ss_dssp             ECTTSCEEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSC-EE
T ss_pred             EECCCCEEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCC-EE
Confidence            433 33222122222356788887766666777778999999874 111111   1223333445678899999984 56


Q ss_pred             EEEeCCCcEEEEEcCCCccceeecCCCCeEEEEeec
Q 036314          289 ISASYDGKVMLWDLRTAWPLSVIDSHKDKVLCADWW  324 (347)
Q Consensus       289 ~s~s~D~~i~lwd~~~~~~~~~~~~h~~~v~~~~~~  324 (347)
                      ++...++.|.+||.++++.+..+..+...+.+++|.
T Consensus       214 va~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~  249 (297)
T 3g4e_A          214 VACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFG  249 (297)
T ss_dssp             EEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEEE
T ss_pred             EEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEEe
Confidence            666677889999999888888887777789999996

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.17  E-value=4.6e-09  Score=102.07  Aligned_cols=241  Identities=12%  Similarity=0.095  Sum_probs=139.3

Q ss_pred             ccCCceEEEEEeecCCCceEEEE-----EccCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEEEE
Q 036314           62 GHCGAVSSVNIIKSDGLKYVTVA-----TASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCS  136 (347)
Q Consensus        62 ~h~~~V~~v~~~~~~~~~~~~l~-----s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~s  136 (347)
                      +|...+..+.|+|++.    .||     .|+++.+|++||+.+++.+.        ..+.+.  ....++|+ ||+.|+.
T Consensus       126 ~~~~~l~~~~~SpDg~----~lAy~~~~~G~~~~~i~v~dl~tg~~~~--------~~~~~~--k~~~~~Ws-Dg~~l~y  190 (693)
T 3iuj_A          126 DGTTALDQLSFSRDGR----ILAYSLSLAGSDWREIHLMDVESKQPLE--------TPLKDV--KFSGISWL-GNEGFFY  190 (693)
T ss_dssp             TSCCEEEEEEECTTSS----EEEEEEECSSCCEEEEEEEETTTCSEEE--------EEEEEE--ESCCCEEE-TTTEEEE
T ss_pred             CCcEEEEEEEECCCCC----EEEEEEecCCCceEEEEEEECCCCCCCc--------cccCCc--eeccEEEe-CCCEEEE
Confidence            3555688889998543    454     34455689999998875321        112111  12467899 9998988


Q ss_pred             eeCCCc-------------EEEEecCCCCCCCccceeeeccCCCccccccccccccccccC-CccceEEEEe-CCCCeEE
Q 036314          137 GSWDCT-------------ISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVG-HTQCVSSVVW-PQQETIY  201 (347)
Q Consensus       137 gs~Dg~-------------I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~-~~~~~l~  201 (347)
                      ++.|..             |++|++.+....                     ...+..... |.....++.| +++++|+
T Consensus       191 ~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~---------------------~~~v~~~~~~~~~~~~~~~~SpDg~~l~  249 (693)
T 3iuj_A          191 SSYDKPDGSELSARTDQHKVYFHRLGTAQED---------------------DRLVFGAIPAQHHRYVGATVTEDDRFLL  249 (693)
T ss_dssp             EESSCCC-------CCCCEEEEEETTSCGGG---------------------CEEEESCSGGGCCSEEEEEECTTSCEEE
T ss_pred             EEecCcccccccccCCCcEEEEEECCCCccc---------------------ceEEEecCCCCCeEEEEEEEcCCCCEEE
Confidence            887754             888887653210                     111222223 3344566666 5777764


Q ss_pred             E-Eec---CCcEEEEECCCCc-eeeeeeeCe-eeEEEEeeCCCCcEEEEecCC---CcEEEEeCCCCCCCCCeEEecCCC
Q 036314          202 S-ASW---DHSVRTWDVEMGK-DLSDIFCGK-ALNCIDIGGEGSALIAAGGSD---PILRIWDPRKPGTSAPVFQFSSHN  272 (347)
Q Consensus       202 s-~s~---dg~v~vwd~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~la~~~~d---~~i~iwd~~~~~~~~~~~~~~~h~  272 (347)
                      . .+.   ++.|.++|+.++. ....+.... ..... +.++++.+++.+..+   +.|..+|+..+. ......+..|.
T Consensus       250 ~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~-~~~~~~l~~~~  327 (693)
T 3iuj_A          250 ISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPG-PAHWRDLIPER  327 (693)
T ss_dssp             EEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCC-GGGCEEEECCC
T ss_pred             EEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCC-ccccEEEecCC
Confidence            3 332   2478999997763 233343222 22222 445566666665443   678999987532 11234566677


Q ss_pred             CCeeEEEeCCCCCeEEEEEeCCC--cEEEEEcCCCccceeec-CCCCeEEEEeec-CCCEEEEccCC----ceEEEeec
Q 036314          273 SWISACKWHNKSWFHLISASYDG--KVMLWDLRTAWPLSVID-SHKDKVLCADWW-RGDSVISGGVD----SKLCVSSG  343 (347)
Q Consensus       273 ~~v~~v~~s~~~~~~l~s~s~D~--~i~lwd~~~~~~~~~~~-~h~~~v~~~~~~-~~~~l~s~s~D----~~v~vw~~  343 (347)
                      ..+.  .|++++..++++...|+  .|++||++.+. ...+. .+.+.+..+.++ +++.|+-...+    ++|..|+.
T Consensus       328 ~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~-~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~  403 (693)
T 3iuj_A          328 QQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGKR-VREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEP  403 (693)
T ss_dssp             SSCE--EEEEETTEEEEEEEETTEEEEEEECTTSCE-EEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECT
T ss_pred             CCEE--EEEEECCEEEEEEEECCeeEEEEEECCCCe-eEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEEC
Confidence            6665  78888877555555665  68899987543 34432 344566677776 34443322222    66776653

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.13  E-value=2.3e-07  Score=79.74  Aligned_cols=237  Identities=7%  Similarity=-0.044  Sum_probs=147.0

Q ss_pred             eccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCC
Q 036314           61 EGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWD  140 (347)
Q Consensus        61 ~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~D  140 (347)
                      ......+.++.+.+++    ...++...++.|.+||.. ++..       . ..+..+...+.+++++++|+++++...+
T Consensus        16 ~~~~~~p~~i~~d~~g----~l~v~~~~~~~v~~~~~~-~~~~-------~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~   82 (300)
T 2qc5_A           16 SIPDSGPYGITSSEDG----KVWFTQHKANKISSLDQS-GRIK-------E-FEVPTPDAKVMCLIVSSLGDIWFTENGA   82 (300)
T ss_dssp             SSTTCCEEEEEECTTS----CEEEEETTTTEEEEECTT-SCEE-------E-EECSSTTCCEEEEEECTTSCEEEEETTT
T ss_pred             CCCCCCcceeeECCCC----CEEEEcCCCCeEEEECCC-CceE-------E-EECCCCCCcceeEEECCCCCEEEEecCC
Confidence            3344567888887643    245566678899999976 4321       1 1122334668899999999988877778


Q ss_pred             CcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEeC-CCCeEEEEecCCcEEEEECCCCce
Q 036314          141 CTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWP-QQETIYSASWDHSVRTWDVEMGKD  219 (347)
Q Consensus       141 g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~l~s~s~dg~v~vwd~~~~~~  219 (347)
                      +.|..||.. +..    .                    ...+......+.++++. ++..+++...++.|..+|.. ++.
T Consensus        83 ~~v~~~d~~-g~~----~--------------------~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~  136 (300)
T 2qc5_A           83 NKIGKLSKK-GGF----T--------------------EYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTI  136 (300)
T ss_dssp             TEEEEECTT-SCE----E--------------------EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCE
T ss_pred             CeEEEECCC-CCe----E--------------------EecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCE
Confidence            889999865 211    0                    00011112346677764 55555655557889999986 543


Q ss_pred             eee-ee-eCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcE
Q 036314          220 LSD-IF-CGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKV  297 (347)
Q Consensus       220 ~~~-~~-~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i  297 (347)
                      ... +. ....+..+.+.+++ .+.++...++.|..||.. . .. .......+...+..+++.+++. +.++...++.|
T Consensus       137 ~~~~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~i~~~~~~-g-~~-~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~i  211 (300)
T 2qc5_A          137 YEYDLPNKGSYPAFITLGSDN-ALWFTENQNNSIGRITNT-G-KL-EEYPLPTNAAAPVGITSGNDGA-LWFVEIMGNKI  211 (300)
T ss_dssp             EEEECSSTTCCEEEEEECTTS-SEEEEETTTTEEEEECTT-C-CE-EEEECSSTTCCEEEEEECTTSS-EEEEETTTTEE
T ss_pred             EEccCCCCCCCceeEEECCCC-CEEEEecCCCeEEEECCC-C-cE-EEeeCCCCCCCcceEEECCCCC-EEEEccCCCEE
Confidence            321 11 12346777776654 466666667889999973 2 21 1222334456788999999874 45555566789


Q ss_pred             EEEEcCCCccce-eecCCCCeEEEEeec-CCCEEEEccCCceEEEee
Q 036314          298 MLWDLRTAWPLS-VIDSHKDKVLCADWW-RGDSVISGGVDSKLCVSS  342 (347)
Q Consensus       298 ~lwd~~~~~~~~-~~~~h~~~v~~~~~~-~~~~l~s~s~D~~v~vw~  342 (347)
                      .+||. +++... .+..+...+.++.+. +|+..++...++.|..++
T Consensus       212 ~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~  257 (300)
T 2qc5_A          212 GRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRIT  257 (300)
T ss_dssp             EEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEC
T ss_pred             EEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEEC
Confidence            99998 444322 233345678888886 466666655667787775

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.11  E-value=1.1e-08  Score=99.46  Aligned_cols=244  Identities=10%  Similarity=-0.002  Sum_probs=139.6

Q ss_pred             CcCCceeeccCCC-CCEEE-----EEecCCeEEEEcCC-CeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCC----
Q 036314           22 LHDDWVSAVDGSN-PGFIL-----TGCYDNLGRVWKAG-GVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQ----   90 (347)
Q Consensus        22 ~h~~~v~~~~~~~-~~~l~-----sg~~d~~i~iw~~~-~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg----   90 (347)
                      +|...+..+++|+ +++||     .|+.+.+|++||+. |..+.. .-+......++|+ ++.    .|+.++.|.    
T Consensus       126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~-~~~~~k~~~~~Ws-Dg~----~l~y~~~~~~~~~  199 (693)
T 3iuj_A          126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET-PLKDVKFSGISWL-GNE----GFFYSSYDKPDGS  199 (693)
T ss_dssp             TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE-EEEEEESCCCEEE-TTT----EEEEEESSCCC--
T ss_pred             CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc-ccCCceeccEEEe-CCC----EEEEEEecCcccc
Confidence            4667788888885 55666     23334689999985 444332 1111113567888 553    355555553    


Q ss_pred             ---------cEEEEeccccccccCccccceeeeeec-cccceEEEEEeCCCCEEE-Eee---CCCcEEEEecCCCCCCCc
Q 036314           91 ---------TLRLWKFDAEELVNHPKKIRSFKILRG-HKASVHSIAAETSGNMVC-SGS---WDCTISLWRTNDSDAAGN  156 (347)
Q Consensus        91 ---------~v~~wd~~~~~~~~~~~~~~~~~~~~~-h~~~V~~v~~s~~~~~l~-sgs---~Dg~I~iwd~~~~~~~~~  156 (347)
                               .|++|++.++..     ..+.+..... |.....++.++|||++|+ +.+   .+..|.++|+.++..   
T Consensus       200 ~~~~~~~~~~v~~~~lgt~~~-----~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~---  271 (693)
T 3iuj_A          200 ELSARTDQHKVYFHRLGTAQE-----DDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENA---  271 (693)
T ss_dssp             -----CCCCEEEEEETTSCGG-----GCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTC---
T ss_pred             cccccCCCcEEEEEECCCCcc-----cceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCC---
Confidence                     499999865431     1112222233 445578899999999775 333   235889998865421   


Q ss_pred             cceeeeccCCCccccccccccccccccCCccceEEEEeCCCCeEE-EEecC---CcEEEEECCCCce--eeeeeeC-eee
Q 036314          157 QVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWPQQETIY-SASWD---HSVRTWDVEMGKD--LSDIFCG-KAL  229 (347)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~-s~s~d---g~v~vwd~~~~~~--~~~~~~~-~~~  229 (347)
                                           ....+..+.........++++.|+ .+..+   +.|..+|+.++..  ...+... ..+
T Consensus       272 ---------------------~~~~l~~~~~~~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~  330 (693)
T 3iuj_A          272 ---------------------PLLTVQGDLDADVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQV  330 (693)
T ss_dssp             ---------------------CCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSC
T ss_pred             ---------------------ceEEEeCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCE
Confidence                                 112233333344443335556554 43333   5688899887643  2233222 222


Q ss_pred             EEEEeeCCCCcEEEEecCCC--cEEEEeCCCCCCCCCeEEec-CCCCCeeEEEeCCCCCeEEEEEeCC---CcEEEEEcC
Q 036314          230 NCIDIGGEGSALIAAGGSDP--ILRIWDPRKPGTSAPVFQFS-SHNSWISACKWHNKSWFHLISASYD---GKVMLWDLR  303 (347)
Q Consensus       230 ~~~~~~~~~~~~la~~~~d~--~i~iwd~~~~~~~~~~~~~~-~h~~~v~~v~~s~~~~~~l~s~s~D---~~i~lwd~~  303 (347)
                      .  .+++.+..++++...++  .|++||+...    ....+. .+...+..+.++|++..++++.+..   +++..||+.
T Consensus       331 ~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~----~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~  404 (693)
T 3iuj_A          331 L--TVHSGSGYLFAEYMVDATARVEQFDYEGK----RVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPK  404 (693)
T ss_dssp             E--EEEEETTEEEEEEEETTEEEEEEECTTSC----EEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred             E--EEEEECCEEEEEEEECCeeEEEEEECCCC----eeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECC
Confidence            2  66666655655555555  6888887621    123332 2445677788888887655554432   789999987


Q ss_pred             CCc
Q 036314          304 TAW  306 (347)
Q Consensus       304 ~~~  306 (347)
                      +++
T Consensus       405 ~g~  407 (693)
T 3iuj_A          405 SGA  407 (693)
T ss_dssp             TCC
T ss_pred             CCe
Confidence            764

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.07  E-value=4e-07  Score=79.94  Aligned_cols=224  Identities=9%  Similarity=0.023  Sum_probs=133.4

Q ss_pred             EEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEe
Q 036314           68 SSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWR  147 (347)
Q Consensus        68 ~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd  147 (347)
                      .+..|+++++   ..+++...++.|..||..+++.          ..+. +...+.+++++++|+++++. .+ .|.+||
T Consensus        52 egp~~~~~~~---~l~~~d~~~~~i~~~d~~~~~~----------~~~~-~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d  115 (326)
T 2ghs_A           52 EGPTFDPASG---TAWWFNILERELHELHLASGRK----------TVHA-LPFMGSALAKISDSKQLIAS-DD-GLFLRD  115 (326)
T ss_dssp             EEEEEETTTT---EEEEEEGGGTEEEEEETTTTEE----------EEEE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEE
T ss_pred             cCCeEeCCCC---EEEEEECCCCEEEEEECCCCcE----------EEEE-CCCcceEEEEeCCCeEEEEE-CC-CEEEEE
Confidence            4567877533   3567777889999999876532          1121 24578999999999877754 44 488898


Q ss_pred             cCCCCCCCccceeeeccCCCcccccccccccccccc--CCccceEEEEe-CCCCeEEEEec------CCcEEEEECCCCc
Q 036314          148 TNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLV--GHTQCVSSVVW-PQQETIYSASW------DHSVRTWDVEMGK  218 (347)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~~~~-~~~~~l~s~s~------dg~v~vwd~~~~~  218 (347)
                      ..++...    .                   +....  .....+..+.+ +++..+++...      .+.|..+|  +++
T Consensus       116 ~~~g~~~----~-------------------~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~  170 (326)
T 2ghs_A          116 TATGVLT----L-------------------HAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGK  170 (326)
T ss_dssp             TTTCCEE----E-------------------EECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTE
T ss_pred             CCCCcEE----E-------------------EeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCc
Confidence            7653210    0                   00000  01234667777 45555444332      23455555  443


Q ss_pred             eeeeeee-CeeeEEEEeeCCCCcEEEEecCCCcEEEEeCC-CCC-CCCC---eEEecCCCCCeeEEEeCCCCCeEEEEEe
Q 036314          219 DLSDIFC-GKALNCIDIGGEGSALIAAGGSDPILRIWDPR-KPG-TSAP---VFQFSSHNSWISACKWHNKSWFHLISAS  292 (347)
Q Consensus       219 ~~~~~~~-~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~-~~~-~~~~---~~~~~~h~~~v~~v~~s~~~~~~l~s~s  292 (347)
                      . ..+.. ......+++++++..++++...++.|.+||+. ..+ ....   ...+.........+.+.+++. +.++..
T Consensus       171 ~-~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~-lwva~~  248 (326)
T 2ghs_A          171 V-TKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGH-IWNARW  248 (326)
T ss_dssp             E-EEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSC-EEEEEE
T ss_pred             E-EEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCC-EEEEEe
Confidence            2 22221 12346778877665565666778899999975 112 1111   122333345567889999885 455555


Q ss_pred             CCCcEEEEEcCCCccceeecCCCCeEEEEeec-C-CCEE-EEccCC
Q 036314          293 YDGKVMLWDLRTAWPLSVIDSHKDKVLCADWW-R-GDSV-ISGGVD  335 (347)
Q Consensus       293 ~D~~i~lwd~~~~~~~~~~~~h~~~v~~~~~~-~-~~~l-~s~s~D  335 (347)
                      .++.|.+||. +++.+..+..+...+.+++|. + ++.| ++...+
T Consensus       249 ~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~~~~  293 (326)
T 2ghs_A          249 GEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVTSARE  293 (326)
T ss_dssp             TTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEEEBCT
T ss_pred             CCCEEEEECC-CCCEEEEEECCCCCcEEEEEecCCCCEEEEEecCC
Confidence            6688999998 466667777666789999996 5 4443 444333

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.05  E-value=1.3e-07  Score=85.83  Aligned_cols=237  Identities=10%  Similarity=0.060  Sum_probs=139.8

Q ss_pred             CceeeccCC-CCCEEEEEecCCeEEEEcCCC-eEEEEeeccCCceEEEEEeecCCCceEEEEEccCCC--cEEEEecccc
Q 036314           25 DWVSAVDGS-NPGFILTGCYDNLGRVWKAGG-VCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQ--TLRLWKFDAE  100 (347)
Q Consensus        25 ~~v~~~~~~-~~~~l~sg~~d~~i~iw~~~~-~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg--~v~~wd~~~~  100 (347)
                      .....++++ ++.++++...++.|+.||..+ ........ ..... ++|.++++    .|+.+..++  .|.+|+...+
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~-~~~~~-ia~~~~g~----~l~~~d~~~~~~I~~~d~~~~  204 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPG-FKGGK-PAVTKDKQ----RVYSIGWEGTHTVYVYMKASG  204 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEET-CCBCB-CEECTTSS----EEEEEBSSTTCEEEEEEGGGT
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeecc-CCCCc-eeEecCCC----cEEEEecCCCceEEEEEcCCC
Confidence            345667766 455677777778999999874 44433333 23233 88887543    466666655  6888876543


Q ss_pred             ccccCccccceeeeeec-cccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCcccccccccccc
Q 036314          101 ELVNHPKKIRSFKILRG-HKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAI  179 (347)
Q Consensus       101 ~~~~~~~~~~~~~~~~~-h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (347)
                      ..      .+.+..+.. +...+.+++++|++..|+.+..++.|+.||......    . .....               
T Consensus       205 ~~------~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~----~-~~~~~---------------  258 (409)
T 3hrp_A          205 WA------PTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEV----T-LIKQL---------------  258 (409)
T ss_dssp             TC------EEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCE----E-EEEEC---------------
T ss_pred             ce------eEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCE----E-EEecc---------------
Confidence            21      011111112 445678899999544454467788999999765321    0 00000               


Q ss_pred             ccccCCccce--EEEEe-CCCCe-EEEEecCCcEEEEECCCCceeeeeeeC----------------eeeEEEEeeCCCC
Q 036314          180 STLVGHTQCV--SSVVW-PQQET-IYSASWDHSVRTWDVEMGKDLSDIFCG----------------KALNCIDIGGEGS  239 (347)
Q Consensus       180 ~~~~~h~~~v--~~~~~-~~~~~-l~s~s~dg~v~vwd~~~~~~~~~~~~~----------------~~~~~~~~~~~~~  239 (347)
                       ...++....  ..+++ +++.. +++-..++.|+.||....  +..+...                .....+++.+++ 
T Consensus       259 -~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG-  334 (409)
T 3hrp_A          259 -ELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDG-  334 (409)
T ss_dssp             -CCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTC-
T ss_pred             -cccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCC-
Confidence             001111111  26776 43454 455566788999986533  2222111                125678887664 


Q ss_pred             cEEEEec-CCCcEEEEeCCCCCCCCCeEEecCC---------------CCCeeEEEeCCCCCeEEEEEeCCCcEEEEEc
Q 036314          240 ALIAAGG-SDPILRIWDPRKPGTSAPVFQFSSH---------------NSWISACKWHNKSWFHLISASYDGKVMLWDL  302 (347)
Q Consensus       240 ~~la~~~-~d~~i~iwd~~~~~~~~~~~~~~~h---------------~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~  302 (347)
                      .++++-. .++.|+.||+...    .+.++.++               ......++++|++ .++++-..+++|+.+++
T Consensus       335 ~lyvad~~~~~~I~~~~~~~G----~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g-~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          335 NFYIVDGFKGYCLRKLDILDG----YVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEG-GYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             CEEEEETTTTCEEEEEETTTT----EEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSS-EEEEEESTTCEEEEEEE
T ss_pred             CEEEEeCCCCCEEEEEECCCC----EEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCC-CEEEEECCCCeEEEEEe
Confidence            4777777 8899999996432    13444444               2457889999985 56777778888988775

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.00  E-value=1.5e-07  Score=83.79  Aligned_cols=255  Identities=10%  Similarity=0.032  Sum_probs=151.7

Q ss_pred             CCeEEEEcCC-CeEEEEeeccCCceEEEEEeecCCCceEEEEEcc----------CCCcEEEEeccccccccCcccccee
Q 036314           44 DNLGRVWKAG-GVCTHILEGHCGAVSSVNIIKSDGLKYVTVATAS----------KDQTLRLWKFDAEELVNHPKKIRSF  112 (347)
Q Consensus        44 d~~i~iw~~~-~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s----------~Dg~v~~wd~~~~~~~~~~~~~~~~  112 (347)
                      +++|.+.|.. ++.+..+..-..+  .++++|++.    .|+.++          .++.|.+||..+.+..         
T Consensus        58 ~~~V~ViD~~t~~v~~~I~vG~~P--~va~spDG~----~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~---------  122 (386)
T 3sjl_D           58 VTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGS----FIAHASTVFSRIARGERTDYVEVFDPVTLLPT---------  122 (386)
T ss_dssp             SEEEEEEETTTTEEEEEEEECSSC--EEEECTTSS----CEEEEEEEEEETTEEEEEEEEEEECTTTCCEE---------
T ss_pred             CCEEEEEECCCCeEEEEEECCCCC--cEEECCCCC----EEEEEcccccccccCCCCCEEEEEECCCCeEE---------
Confidence            6789999975 5556665533333  489999654    344433          4678999999876532         


Q ss_pred             eeeecc-------ccceEEEEEeCCCCEEEEeeC--CCcEEEEecCCCCCCCccceeeeccCCCcccccccccccccccc
Q 036314          113 KILRGH-------KASVHSIAAETSGNMVCSGSW--DCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLV  183 (347)
Q Consensus       113 ~~~~~h-------~~~V~~v~~s~~~~~l~sgs~--Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (347)
                      ..+.-.       ......++|+|||++++.+..  +++|.++|+.+...                         +.++.
T Consensus       123 ~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~v-------------------------v~tI~  177 (386)
T 3sjl_D          123 ADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAF-------------------------KRMLD  177 (386)
T ss_dssp             EEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEE-------------------------EEEEE
T ss_pred             EEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcE-------------------------EEEEE
Confidence            222110       112345899999999887764  68999999886421                         11221


Q ss_pred             CCccceEEEEeCC-CCeEEEEecCCcEEEEECCC-Cceeeee---ee-C-eee-EEEEeeCCCCcEEEEecCCCcEEEEe
Q 036314          184 GHTQCVSSVVWPQ-QETIYSASWDHSVRTWDVEM-GKDLSDI---FC-G-KAL-NCIDIGGEGSALIAAGGSDPILRIWD  255 (347)
Q Consensus       184 ~h~~~v~~~~~~~-~~~l~s~s~dg~v~vwd~~~-~~~~~~~---~~-~-~~~-~~~~~~~~~~~~la~~~~d~~i~iwd  255 (347)
                      -. .+  ...+|. .+.+++.+.||++.+.++.+ ++.....   .. . .++ ....+...++.++. .+.++.|++.|
T Consensus       178 v~-g~--~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d  253 (386)
T 3sjl_D          178 VP-DC--YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQID  253 (386)
T ss_dssp             CC-SE--EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEE
T ss_pred             CC-Cc--ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEE
Confidence            11 11  123443 35677888899999999876 4432211   10 0 111 11233334554433 45579999999


Q ss_pred             CCCCCCCCCeEEec---------C-CCCCeeEEEeCCCCCeEEEEEeC---------CCcEEEEEcCCCccceeecCCCC
Q 036314          256 PRKPGTSAPVFQFS---------S-HNSWISACKWHNKSWFHLISASY---------DGKVMLWDLRTAWPLSVIDSHKD  316 (347)
Q Consensus       256 ~~~~~~~~~~~~~~---------~-h~~~v~~v~~s~~~~~~l~s~s~---------D~~i~lwd~~~~~~~~~~~~h~~  316 (347)
                      ...... .....+.         + .......++++|++.++.++...         ..+|-+.|+++++.+..+.- ..
T Consensus       254 ~~~~~~-~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~v-g~  331 (386)
T 3sjl_D          254 LSSGDA-KFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM-GH  331 (386)
T ss_dssp             CTTSSC-EECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-EE
T ss_pred             CCCCcc-eeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEEC-CC
Confidence            864321 1111111         0 01123347778888775555432         25799999999988887743 23


Q ss_pred             eEEEEeecC-CC-EE-EEccCCceEEEeecc
Q 036314          317 KVLCADWWR-GD-SV-ISGGVDSKLCVSSGV  344 (347)
Q Consensus       317 ~v~~~~~~~-~~-~l-~s~s~D~~v~vw~~~  344 (347)
                      .++++.+++ ++ +| ++...+++|.|++..
T Consensus       332 ~~~~lavs~D~~~~ly~tn~~~~~VsViD~~  362 (386)
T 3sjl_D          332 EIDSINVSQDEKPLLYALSTGDKTLYIHDAE  362 (386)
T ss_dssp             EECEEEECSSSSCEEEEEETTTTEEEEEETT
T ss_pred             CcceEEECCCCCeEEEEEcCCCCeEEEEECC
Confidence            678999985 54 44 445669999999875

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.99  E-value=2.1e-07  Score=80.75  Aligned_cols=239  Identities=12%  Similarity=0.050  Sum_probs=138.2

Q ss_pred             EEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEe
Q 036314           58 HILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSG  137 (347)
Q Consensus        58 ~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sg  137 (347)
                      ..+...........|+++++   ..+++...++.|..|+.. ++          ...+..+...+..++++++|+++++.
T Consensus        38 ~~l~~~~~~~egp~~~~~g~---~l~~~d~~~~~i~~~~~~-g~----------~~~~~~~~~~~~gl~~d~dG~l~v~~  103 (305)
T 3dr2_A           38 LTLYDQATWSEGPAWWEAQR---TLVWSDLVGRRVLGWRED-GT----------VDVLLDATAFTNGNAVDAQQRLVHCE  103 (305)
T ss_dssp             EEEECCCSSEEEEEEEGGGT---EEEEEETTTTEEEEEETT-SC----------EEEEEESCSCEEEEEECTTSCEEEEE
T ss_pred             EEEecCCcCccCCeEeCCCC---EEEEEECCCCEEEEEeCC-CC----------EEEEeCCCCccceeeECCCCCEEEEE
Confidence            34444445567788888543   357788888999999873 22          12344456678999999999977766


Q ss_pred             eCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCC-ccceEEEEe-CCCCeEEE----Eec------
Q 036314          138 SWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGH-TQCVSSVVW-PQQETIYS----ASW------  205 (347)
Q Consensus       138 s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~-~~~~~l~s----~s~------  205 (347)
                      ..++.|.+|+.. +..    ....                  ....+. ...+..+++ +++..+++    +..      
T Consensus       104 ~~~~~v~~~~~~-g~~----~~~~------------------~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~  160 (305)
T 3dr2_A          104 HGRRAITRSDAD-GQA----HLLV------------------GRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGC  160 (305)
T ss_dssp             TTTTEEEEECTT-SCE----EEEE------------------CEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSC
T ss_pred             CCCCEEEEECCC-CCE----EEEE------------------eccCCCccCCCCCEEECCCCCEEEeCcCCCcccccccc
Confidence            666889999864 210    0000                  000000 012344555 45555554    322      


Q ss_pred             -------CCcEEEEECCCCceeeeeeeCeeeEEEEeeCCCCcEEEEecC-----CCcEEEEeCCCCCCCCCeEEe-cCCC
Q 036314          206 -------DHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEGSALIAAGGS-----DPILRIWDPRKPGTSAPVFQF-SSHN  272 (347)
Q Consensus       206 -------dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~-----d~~i~iwd~~~~~~~~~~~~~-~~h~  272 (347)
                             .+.|..||..+++..... .......+++++++..++++...     .+.|..||+.... ......+ ....
T Consensus       161 ~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~~  238 (305)
T 3dr2_A          161 PADPELAHHSVYRLPPDGSPLQRMA-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASVPD  238 (305)
T ss_dssp             CCCCSSSCEEEEEECSSSCCCEEEE-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECCSS
T ss_pred             ccccccCCCeEEEEcCCCCcEEEEe-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEECCC
Confidence                   245777787666543222 22234678887766545444443     2789999976321 1111111 1123


Q ss_pred             CCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecCCCCeEEEEeecC-CCEEEEccCCceEEE
Q 036314          273 SWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKVLCADWWR-GDSVISGGVDSKLCV  340 (347)
Q Consensus       273 ~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~l~s~s~D~~v~v  340 (347)
                      .....+++.++|.  |..+..+ .|.+||.+ ++.+..+..+. .+.+++|.+ ++.|..++.++..++
T Consensus       239 ~~pdgi~~d~~G~--lwv~~~~-gv~~~~~~-g~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~l~~~  302 (305)
T 3dr2_A          239 GLPDGFCVDRGGW--LWSSSGT-GVCVFDSD-GQLLGHIPTPG-TASNCTFDQAQQRLFITGGPCLWML  302 (305)
T ss_dssp             SCCCSEEECTTSC--EEECCSS-EEEEECTT-SCEEEEEECSS-CCCEEEECTTSCEEEEEETTEEEEE
T ss_pred             CCCCeEEECCCCC--EEEecCC-cEEEECCC-CCEEEEEECCC-ceeEEEEeCCCCEEEEEcCCeEEEE
Confidence            3445688888885  4444544 49999984 66666665544 578889974 555555555655444

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.98  E-value=3.6e-07  Score=81.72  Aligned_cols=271  Identities=11%  Similarity=0.056  Sum_probs=147.3

Q ss_pred             CCCEEEEEecCCeEEEEcCC-CeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCcccccee
Q 036314           34 NPGFILTGCYDNLGRVWKAG-GVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSF  112 (347)
Q Consensus        34 ~~~~l~sg~~d~~i~iw~~~-~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~  112 (347)
                      .++.+..++.|+.+..+|.. |+.+..............+.  ++    .++.++.++.|..+|..+++..-........
T Consensus       102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~--~~----~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~  175 (376)
T 3q7m_A          102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVS--DG----LVLIHTSNGQLQALNEADGAVKWTVNLDMPS  175 (376)
T ss_dssp             ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEEE--TT----EEEEECTTSEEEEEETTTCCEEEEEECCC--
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEEE--CC----EEEEEcCCCeEEEEECCCCcEEEEEeCCCCc
Confidence            35677788889999999974 77665554332221122222  21    4677888999999998877532110000000


Q ss_pred             eeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCcccccccccccccccc-CCccceEE
Q 036314          113 KILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLV-GHTQCVSS  191 (347)
Q Consensus       113 ~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~  191 (347)
                      ..+.+...++    ..  +..++.++.++.+..+|..++......      ........     ..+..+. ....++  
T Consensus       176 ~~~~~~~~~~----~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~------~~~~~~~~-----~~~~~~~~~~~~p~--  236 (376)
T 3q7m_A          176 LSLRGESAPT----TA--FGAAVVGGDNGRVSAVLMEQGQMIWQQ------RISQATGS-----TEIDRLSDVDTTPV--  236 (376)
T ss_dssp             ---CCCCCCE----EE--TTEEEECCTTTEEEEEETTTCCEEEEE------ECCC----------------CCCCCCE--
T ss_pred             eeecCCCCcE----EE--CCEEEEEcCCCEEEEEECCCCcEEEEE------ecccCCCC-----cccccccccCCCcE--
Confidence            0011111221    12  346777888999999998765321100      00000000     0000000 001111  


Q ss_pred             EEeCCCCeEEEEecCCcEEEEECCCCceeeeeeeCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEec-C
Q 036314          192 VVWPQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFS-S  270 (347)
Q Consensus       192 ~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~-~  270 (347)
                         -.+..++.++.++.+..+|.++++.+-...... ......  .++ .+..++.++.+..+|.....   .+.... .
T Consensus       237 ---~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~~-~~~~~~--~~~-~l~~~~~~g~l~~~d~~tG~---~~w~~~~~  306 (376)
T 3q7m_A          237 ---VVNGVVFALAYNGNLTALDLRSGQIMWKRELGS-VNDFIV--DGN-RIYLVDQNDRVMALTIDGGV---TLWTQSDL  306 (376)
T ss_dssp             ---EETTEEEEECTTSCEEEEETTTCCEEEEECCCC-EEEEEE--ETT-EEEEEETTCCEEEEETTTCC---EEEEECTT
T ss_pred             ---EECCEEEEEecCcEEEEEECCCCcEEeeccCCC-CCCceE--ECC-EEEEEcCCCeEEEEECCCCc---EEEeeccc
Confidence               124677788889999999999987664433222 223333  233 45566778999999986432   233332 1


Q ss_pred             CCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecCCCCeEEEEeecCCCEEEEccCCceEEEee
Q 036314          271 HNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKVLCADWWRGDSVISGGVDSKLCVSS  342 (347)
Q Consensus       271 h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~D~~v~vw~  342 (347)
                      ....+...... + . .|..++.+|.+..+|.++++.+..+......+.+.....+..|..++.||.|..++
T Consensus       307 ~~~~~~~~~~~-~-~-~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~G~l~~~~  375 (376)
T 3q7m_A          307 LHRLLTSPVLY-N-G-NLVVGDSEGYLHWINVEDGRFVAQQKVDSSGFQTEPVAADGKLLIQAKDGTVYSIT  375 (376)
T ss_dssp             TTSCCCCCEEE-T-T-EEEEECTTSEEEEEETTTCCEEEEEECCTTCBCSCCEEETTEEEEEBTTSCEEEEE
T ss_pred             CCCcccCCEEE-C-C-EEEEEeCCCeEEEEECCCCcEEEEEecCCCcceeCCEEECCEEEEEeCCCEEEEEe
Confidence            12222223332 2 2 48888999999999999998776655433333321111355777788899998875

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=98.96  E-value=1e-06  Score=76.18  Aligned_cols=216  Identities=13%  Similarity=0.146  Sum_probs=130.0

Q ss_pred             CCEEEEEecCCeEEEEcCCCeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeee
Q 036314           35 PGFILTGCYDNLGRVWKAGGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKI  114 (347)
Q Consensus        35 ~~~l~sg~~d~~i~iw~~~~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~  114 (347)
                      +.++++...++.|..||..+.....+. ....+.++++.+++.    +++ +. ++.|.+||.+++++.       .+..
T Consensus        25 ~~l~~~d~~~~~i~~~d~~~~~~~~~~-~~~~~~~i~~~~dG~----l~v-~~-~~~l~~~d~~~g~~~-------~~~~   90 (297)
T 3g4e_A           25 NSLLFVDIPAKKVCRWDSFTKQVQRVT-MDAPVSSVALRQSGG----YVA-TI-GTKFCALNWKEQSAV-------VLAT   90 (297)
T ss_dssp             TEEEEEETTTTEEEEEETTTCCEEEEE-CSSCEEEEEEBTTSS----EEE-EE-TTEEEEEETTTTEEE-------EEEE
T ss_pred             CEEEEEECCCCEEEEEECCCCcEEEEe-CCCceEEEEECCCCC----EEE-EE-CCeEEEEECCCCcEE-------EEEe
Confidence            457777778899999998643333332 446789999987543    333 33 567999998765421       1111


Q ss_pred             eec--cccceEEEEEeCCCCEEEEeeCC---------CcEEEEecCCCCCCCccceeeeccCCCcccccccccccccccc
Q 036314          115 LRG--HKASVHSIAAETSGNMVCSGSWD---------CTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLV  183 (347)
Q Consensus       115 ~~~--h~~~V~~v~~s~~~~~l~sgs~D---------g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (347)
                      ...  ....++.++++++|+++++...+         ...+||.+....   .                      ...+.
T Consensus        91 ~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g---~----------------------~~~~~  145 (297)
T 3g4e_A           91 VDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDH---H----------------------VKKYF  145 (297)
T ss_dssp             CCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTS---C----------------------EEEEE
T ss_pred             cCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCC---C----------------------EEEEe
Confidence            111  12447889999999977754322         334566554210   0                      00011


Q ss_pred             CCccceEEEEe-CCCCeE-EEEecCCcEEEEEC--CCCceee--eee---e-CeeeEEEEeeCCCCcEEEEecCCCcEEE
Q 036314          184 GHTQCVSSVVW-PQQETI-YSASWDHSVRTWDV--EMGKDLS--DIF---C-GKALNCIDIGGEGSALIAAGGSDPILRI  253 (347)
Q Consensus       184 ~h~~~v~~~~~-~~~~~l-~s~s~dg~v~vwd~--~~~~~~~--~~~---~-~~~~~~~~~~~~~~~~la~~~~d~~i~i  253 (347)
                      .+-...+.++| ++++.| ++.+.++.|.+||+  .++....  .+.   . ...+..+++.+++ ++.++...++.|..
T Consensus       146 ~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G-~lwva~~~~~~v~~  224 (297)
T 3g4e_A          146 DQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEG-KLWVACYNGGRVIR  224 (297)
T ss_dssp             EEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTS-CEEEEEETTTEEEE
T ss_pred             eccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCC-CEEEEEcCCCEEEE
Confidence            11223467777 466665 45566788999987  4554321  111   1 1245667776654 56666666788999


Q ss_pred             EeCCCCCCCCCeEEecCCCCCeeEEEeC-CCCCeEEEEEeC
Q 036314          254 WDPRKPGTSAPVFQFSSHNSWISACKWH-NKSWFHLISASY  293 (347)
Q Consensus       254 wd~~~~~~~~~~~~~~~h~~~v~~v~~s-~~~~~~l~s~s~  293 (347)
                      ||+...   ..+..+..+...+.+++|. |++..+.++...
T Consensus       225 ~d~~tG---~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~~  262 (297)
T 3g4e_A          225 LDPVTG---KRLQTVKLPVDKTTSCCFGGKNYSEMYVTCAR  262 (297)
T ss_dssp             ECTTTC---CEEEEEECSSSBEEEEEEESGGGCEEEEEEBC
T ss_pred             EcCCCc---eEEEEEECCCCCceEEEEeCCCCCEEEEEcCC
Confidence            998632   2345666666789999998 777665565554

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.86  E-value=3e-09  Score=95.30  Aligned_cols=191  Identities=12%  Similarity=0.077  Sum_probs=96.8

Q ss_pred             EEEEccCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceee
Q 036314           82 TVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIK  161 (347)
Q Consensus        82 ~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~  161 (347)
                      .|++++.||.|+.||..+++..         -.+..  +++.+..+..++..+++++.|+.|+.||..+++...      
T Consensus        11 ~v~~gs~dg~v~a~d~~tG~~~---------W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w------   73 (369)
T 2hz6_A           11 LLFVSTLDGSLHAVSKRTGSIK---------WTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLT------   73 (369)
T ss_dssp             EEEEEETTSEEEEEETTTCCEE---------EEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSE------
T ss_pred             EEEEEcCCCEEEEEECCCCCEE---------EEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceee------
Confidence            5888999999999999887632         12222  344444455677888888999999999987653211      


Q ss_pred             eccCCCccccccccccccccccCCcc-ceE-EEEeCCCCeEEEEecCCcEEEEECCCCceeeeeeeCeeeEEEEeeCCCC
Q 036314          162 KRKGNNQVEEPQLEGEAISTLVGHTQ-CVS-SVVWPQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEGS  239 (347)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~-~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (347)
                                         .+..+.. .+. +.....++.+++++.|+.|..||.++|+.+-.+.....   ..+.+ .+
T Consensus        74 -------------------~~~~~~~~~~~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~---~~~~p-~~  130 (369)
T 2hz6_A           74 -------------------KLPFTIPELVQASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAFA---DSLSP-ST  130 (369)
T ss_dssp             -------------------ECSCCHHHHHTTCSCC-----CCCCEEEEEEEEECCC------------------------
T ss_pred             -------------------eeeccCccccccCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCCc---ccccc-cC
Confidence                               0000000 000 00111345677888999999999999987654433221   22333 34


Q ss_pred             cEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCC---CeEEEEEeCCCcEEEEEcCCCccceeecCCCC
Q 036314          240 ALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKS---WFHLISASYDGKVMLWDLRTAWPLSVIDSHKD  316 (347)
Q Consensus       240 ~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~---~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h~~  316 (347)
                      ..+++++.|+.|+.||.+.... .-.......    ....+.++.   . .++.++.||.+..||.++++.+-.+.- ..
T Consensus       131 ~~v~~~~~dg~v~a~d~~tG~~-~W~~~~~~~----~~~~~~~~~~~~~-~v~~~~~dg~v~a~d~~tG~~~W~~~~-~~  203 (369)
T 2hz6_A          131 SLLYLGRTEYTITMYDTKTREL-RWNATYFDY----AASLPEDDVDYKM-SHFVSNGDGLVVTVDSESGDVLWIQNY-AS  203 (369)
T ss_dssp             --EEEEEEEEEEECCCSSSSSC-CCEEEEEEE----CCBCCCCCTTCCC-CEEEEETSCEEEEECTTTCCEEEEEEC-SS
T ss_pred             CEEEEEecCCEEEEEECCCCCE-EEeEecccc----cCccccCCccccc-eEEEECCCCEEEEEECCCCcEEEEecC-CC
Confidence            4667788899999999875422 111222211    222333321   2 377789999999999999876655442 33


Q ss_pred             eEE
Q 036314          317 KVL  319 (347)
Q Consensus       317 ~v~  319 (347)
                      ++.
T Consensus       204 pv~  206 (369)
T 2hz6_A          204 PVV  206 (369)
T ss_dssp             CEE
T ss_pred             ceE
Confidence            444

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.85  E-value=9.9e-07  Score=76.50  Aligned_cols=222  Identities=11%  Similarity=0.135  Sum_probs=127.3

Q ss_pred             CceeeccCC-CCC-EEEEEecCCeEEEEcCCCeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEecccccc
Q 036314           25 DWVSAVDGS-NPG-FILTGCYDNLGRVWKAGGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEEL  102 (347)
Q Consensus        25 ~~v~~~~~~-~~~-~l~sg~~d~~i~iw~~~~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~  102 (347)
                      .+.....++ +++ +++++..++.|..|+..+. ...+..+...+..+.+.+++    ..+++...++.|.+|+.+ ++.
T Consensus        45 ~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g~-~~~~~~~~~~~~gl~~d~dG----~l~v~~~~~~~v~~~~~~-g~~  118 (305)
T 3dr2_A           45 TWSEGPAWWEAQRTLVWSDLVGRRVLGWREDGT-VDVLLDATAFTNGNAVDAQQ----RLVHCEHGRRAITRSDAD-GQA  118 (305)
T ss_dssp             SSEEEEEEEGGGTEEEEEETTTTEEEEEETTSC-EEEEEESCSCEEEEEECTTS----CEEEEETTTTEEEEECTT-SCE
T ss_pred             cCccCCeEeCCCCEEEEEECCCCEEEEEeCCCC-EEEEeCCCCccceeeECCCC----CEEEEECCCCEEEEECCC-CCE
Confidence            344455544 455 6778878899999998665 34556666778899998743    345555556789999875 321


Q ss_pred             ccCccccceee-eeec-cccceEEEEEeCCCCEEEE----eeC-------------CCcEEEEecCCCCCCCccceeeec
Q 036314          103 VNHPKKIRSFK-ILRG-HKASVHSIAAETSGNMVCS----GSW-------------DCTISLWRTNDSDAAGNQVSIKKR  163 (347)
Q Consensus       103 ~~~~~~~~~~~-~~~~-h~~~V~~v~~s~~~~~l~s----gs~-------------Dg~I~iwd~~~~~~~~~~~~~~~~  163 (347)
                      .       .+. ...+ ....++.++++++|++.+|    |..             .+.|..|+..++..          
T Consensus       119 ~-------~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~----------  181 (305)
T 3dr2_A          119 H-------LLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPL----------  181 (305)
T ss_dssp             E-------EEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCC----------
T ss_pred             E-------EEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcE----------
Confidence            1       111 1111 1234667899999998887    432             13455554432210          


Q ss_pred             cCCCccccccccccccccccCCccceEEEEe-CCCCeEEEEecC------CcEEEEECCCCceeee--eee---CeeeEE
Q 036314          164 KGNNQVEEPQLEGEAISTLVGHTQCVSSVVW-PQQETIYSASWD------HSVRTWDVEMGKDLSD--IFC---GKALNC  231 (347)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~l~s~s~d------g~v~vwd~~~~~~~~~--~~~---~~~~~~  231 (347)
                                      ..+. .......++| ++++.|+.+...      +.|.+||+..+. +..  ...   ......
T Consensus       182 ----------------~~~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~~~~pdg  243 (305)
T 3dr2_A          182 ----------------QRMA-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASVPDGLPDG  243 (305)
T ss_dssp             ----------------EEEE-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECCSSSCCCS
T ss_pred             ----------------EEEe-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEECCCCCCCe
Confidence                            0111 1223456777 566767766554      689999987543 211  110   112234


Q ss_pred             EEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCc
Q 036314          232 IDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGK  296 (347)
Q Consensus       232 ~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~  296 (347)
                      +.+.+++ ++.+ +..+ .|.+||...  .  ....+..+. .+.+++|+|++.. |..++.++.
T Consensus       244 i~~d~~G-~lwv-~~~~-gv~~~~~~g--~--~~~~~~~~~-~~~~~~f~~d~~~-L~it~~~~l  299 (305)
T 3dr2_A          244 FCVDRGG-WLWS-SSGT-GVCVFDSDG--Q--LLGHIPTPG-TASNCTFDQAQQR-LFITGGPCL  299 (305)
T ss_dssp             EEECTTS-CEEE-CCSS-EEEEECTTS--C--EEEEEECSS-CCCEEEECTTSCE-EEEEETTEE
T ss_pred             EEECCCC-CEEE-ecCC-cEEEECCCC--C--EEEEEECCC-ceeEEEEeCCCCE-EEEEcCCeE
Confidence            5665544 4444 3344 599999742  2  234444444 5888999988765 555555543

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.85  E-value=8.4e-06  Score=71.40  Aligned_cols=215  Identities=10%  Similarity=0.024  Sum_probs=125.1

Q ss_pred             CCEEEEEecCCeEEEEcCCCeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeee
Q 036314           35 PGFILTGCYDNLGRVWKAGGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKI  114 (347)
Q Consensus        35 ~~~l~sg~~d~~i~iw~~~~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~  114 (347)
                      +.++++...++.|..|+..+.....+. ....+.++.+.+++    ..+++ +.+ .|.+||..+++..       .+..
T Consensus        61 ~~l~~~d~~~~~i~~~d~~~~~~~~~~-~~~~v~~i~~~~dg----~l~v~-~~~-gl~~~d~~~g~~~-------~~~~  126 (326)
T 2ghs_A           61 GTAWWFNILERELHELHLASGRKTVHA-LPFMGSALAKISDS----KQLIA-SDD-GLFLRDTATGVLT-------LHAE  126 (326)
T ss_dssp             TEEEEEEGGGTEEEEEETTTTEEEEEE-CSSCEEEEEEEETT----EEEEE-ETT-EEEEEETTTCCEE-------EEEC
T ss_pred             CEEEEEECCCCEEEEEECCCCcEEEEE-CCCcceEEEEeCCC----eEEEE-ECC-CEEEEECCCCcEE-------EEee
Confidence            346777777899999998654433333 34678999998853    33443 344 4999998765421       1111


Q ss_pred             ee-c-cccceEEEEEeCCCCEEEEeeCC----CcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccc
Q 036314          115 LR-G-HKASVHSIAAETSGNMVCSGSWD----CTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQC  188 (347)
Q Consensus       115 ~~-~-h~~~V~~v~~s~~~~~l~sgs~D----g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  188 (347)
                      .. + ....+++++++++|+++++...+    ....||.+.++.                          ...+..+...
T Consensus       127 ~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~~g~--------------------------~~~~~~~~~~  180 (326)
T 2ghs_A          127 LESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGK--------------------------VTKLFADISI  180 (326)
T ss_dssp             SSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTE--------------------------EEEEEEEESS
T ss_pred             CCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEeCCc--------------------------EEEeeCCCcc
Confidence            11 1 12457899999999977755422    234555443210                          0001111123


Q ss_pred             eEEEEeC-CCCeEE-EEecCCcEEEEECC--CC-cee--eeee----eCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCC
Q 036314          189 VSSVVWP-QQETIY-SASWDHSVRTWDVE--MG-KDL--SDIF----CGKALNCIDIGGEGSALIAAGGSDPILRIWDPR  257 (347)
Q Consensus       189 v~~~~~~-~~~~l~-s~s~dg~v~vwd~~--~~-~~~--~~~~----~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~  257 (347)
                      ...++|. +++.++ +.+.++.|.+||+.  ++ ...  ..+.    .......+.+.+++ .+.++...++.|..||..
T Consensus       181 ~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G-~lwva~~~~~~v~~~d~~  259 (326)
T 2ghs_A          181 PNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEG-HIWNARWGEGAVDRYDTD  259 (326)
T ss_dssp             EEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTS-CEEEEEETTTEEEEECTT
T ss_pred             cCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCC-CEEEEEeCCCEEEEECCC
Confidence            4567774 666664 44557889999985  55 311  1111    11234567776554 565555556889999974


Q ss_pred             CCCCCCCeEEecCCCCCeeEEEeC-CCCCeEEEEEeCC
Q 036314          258 KPGTSAPVFQFSSHNSWISACKWH-NKSWFHLISASYD  294 (347)
Q Consensus       258 ~~~~~~~~~~~~~h~~~v~~v~~s-~~~~~~l~s~s~D  294 (347)
                       . .  ....+..+...+.+++|. |++..++++...+
T Consensus       260 -g-~--~~~~i~~~~~~~~~~af~g~d~~~L~vt~~~~  293 (326)
T 2ghs_A          260 -G-N--HIARYEVPGKQTTCPAFIGPDASRLLVTSARE  293 (326)
T ss_dssp             -C-C--EEEEEECSCSBEEEEEEESTTSCEEEEEEBCT
T ss_pred             -C-C--EEEEEECCCCCcEEEEEecCCCCEEEEEecCC
Confidence             2 2  244555666679999998 7876655555544

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.84  E-value=1.9e-07  Score=83.09  Aligned_cols=265  Identities=11%  Similarity=-0.097  Sum_probs=148.4

Q ss_pred             CEEEEEecCC----eEEEEcCC-CeEEEEeeccCCceEEEEEeecCCCceEEEEEcc----------CCCcEEEEecccc
Q 036314           36 GFILTGCYDN----LGRVWKAG-GVCTHILEGHCGAVSSVNIIKSDGLKYVTVATAS----------KDQTLRLWKFDAE  100 (347)
Q Consensus        36 ~~l~sg~~d~----~i~iw~~~-~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s----------~Dg~v~~wd~~~~  100 (347)
                      ...++...++    ++.+.|.. ++.+..+.--..+  .+.++|++.    .++.+.          .+++|.+||+.+.
T Consensus        33 ~~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~----~lyVan~~~~r~~~G~~~~~VsviD~~T~  106 (368)
T 1mda_H           33 RSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGS----DFALASTSFARSAKGKRTDYVEVFDPVTF  106 (368)
T ss_dssp             EEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSS----CEEEEEEEETTTTSSSEEEEEEEECTTTC
T ss_pred             eEEEECCccCCccceEEEEECCCCeEEEEEeCCCCC--ceEECCCCC----EEEEEcccccccccCCCCCEEEEEECCCC
Confidence            3555655555    78899975 5666666533344  799999654    244443          4789999999876


Q ss_pred             ccccCccccceeeeeecc-------ccceEEEEEeCCCCEEEEeeC--CCcEEE--EecCCCCCC---C-ccceeee---
Q 036314          101 ELVNHPKKIRSFKILRGH-------KASVHSIAAETSGNMVCSGSW--DCTISL--WRTNDSDAA---G-NQVSIKK---  162 (347)
Q Consensus       101 ~~~~~~~~~~~~~~~~~h-------~~~V~~v~~s~~~~~l~sgs~--Dg~I~i--wd~~~~~~~---~-~~~~~~~---  162 (347)
                      +..         .++.-+       ......++|+|||++++.+..  +..+.+  +|+.+....   + .......   
T Consensus       107 ~vv---------~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~tv~~i~v~~~~~~~p~g~~~  177 (368)
T 1mda_H          107 LPI---------ADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAAT  177 (368)
T ss_dssp             CEE---------EEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEETTE
T ss_pred             CEE---------EEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhhceEEECCCceEEccCCCeE
Confidence            532         233211       022456899999999998875  467888  887540000   0 0000000   


Q ss_pred             ----ccCCCccccccc-----ccccc----ccccCCccceEEEEeCCCCeEEEEecCCcEEEEECCCCc--eeeeeee--
Q 036314          163 ----RKGNNQVEEPQL-----EGEAI----STLVGHTQCVSSVVWPQQETIYSASWDHSVRTWDVEMGK--DLSDIFC--  225 (347)
Q Consensus       163 ----~~~~~~~~~~~~-----~~~~~----~~~~~h~~~v~~~~~~~~~~l~s~s~dg~v~vwd~~~~~--~~~~~~~--  225 (347)
                          ............     .++..    ..+.-...+.   .++++..++..+. +.+.+.|+....  .+..+..  
T Consensus       178 ~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~  253 (368)
T 1mda_H          178 HYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---QANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNE  253 (368)
T ss_dssp             EECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---EETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSC
T ss_pred             EEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---ccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEecc
Confidence                000000000000     01100    0010111222   2566666666666 899999986532  2222211  


Q ss_pred             ------C---eeeEEEEeeCCCCcEEEEec---C-----CCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEE
Q 036314          226 ------G---KALNCIDIGGEGSALIAAGG---S-----DPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHL  288 (347)
Q Consensus       226 ------~---~~~~~~~~~~~~~~~la~~~---~-----d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l  288 (347)
                            .   .....+.+++++..++++..   .     ++.+.++|+....   .+..+.... ....++|+||+.+++
T Consensus       254 ~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~---vv~~i~vg~-~p~gi~~s~Dg~~l~  329 (368)
T 1mda_H          254 SGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQ---TSGPISNGH-DSDAIIAAQDGASDN  329 (368)
T ss_dssp             THHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCC---EEECCEEEE-EECEEEECCSSSCEE
T ss_pred             ccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCe---EEEEEECCC-CcceEEECCCCCEEE
Confidence                  0   11122567777766665433   2     2456699987532   233333222 577899999998778


Q ss_pred             EEEe-CCCcEEEEEcCCCccceeecCCCCeEEEEeec
Q 036314          289 ISAS-YDGKVMLWDLRTAWPLSVIDSHKDKVLCADWW  324 (347)
Q Consensus       289 ~s~s-~D~~i~lwd~~~~~~~~~~~~h~~~v~~~~~~  324 (347)
                      ++.. .+++|.++|+.+++.++++.... ..+++++.
T Consensus       330 va~~~~~~~VsVID~~t~kvv~~I~vg~-~P~~i~~~  365 (368)
T 1mda_H          330 YANSAGTEVLDIYDAASDQDQSSVELDK-GPESLSVQ  365 (368)
T ss_dssp             EEEETTTTEEEEEESSSCEEEEECCCCS-CCCEEECC
T ss_pred             EEccCCCCeEEEEECCCCcEEEEEECCC-CCCEEEee
Confidence            8888 69999999999999888886543 34556554

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.83  E-value=4e-09  Score=94.50  Aligned_cols=181  Identities=11%  Similarity=0.021  Sum_probs=95.4

Q ss_pred             CCCEEEEEecCCeEEEEcC-CCeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCcccccee
Q 036314           34 NPGFILTGCYDNLGRVWKA-GGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSF  112 (347)
Q Consensus        34 ~~~~l~sg~~d~~i~iw~~-~~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~  112 (347)
                      +++.+++++.|+.++.||. .|+.+..+..  +.+.+..+..++    ..+++++.|+.|+.||..+++.+-        
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g----~~~v~~s~dg~l~a~d~~tG~~~w--------   73 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEE----PAFLPDPNDGSLYTLGSKNNEGLT--------   73 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC---------CCEEECTTTCCEEEC-----CCSE--------
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCC----CEEEEeCCCCEEEEEECCCCceee--------
Confidence            5678999999999999996 5777777665  445444344322    346778999999999997765321        


Q ss_pred             eeeecccc-ceEE-EEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceE
Q 036314          113 KILRGHKA-SVHS-IAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVS  190 (347)
Q Consensus       113 ~~~~~h~~-~V~~-v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~  190 (347)
                       .+..+.. .+.+ ..+. ++..+++++.|+.++.||..+++..                         ..+..+. .+.
T Consensus        74 -~~~~~~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~-------------------------w~~~~~~-~~~  125 (369)
T 2hz6_A           74 -KLPFTIPELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQ-------------------------QTLSSAF-ADS  125 (369)
T ss_dssp             -ECSCCHHHHHTTCSCC------CCCCEEEEEEEEECCC-----------------------------------------
T ss_pred             -eeeccCccccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEE-------------------------EEecCCC-ccc
Confidence             1111110 0100 0111 3456778899999999998865321                         1111111 010


Q ss_pred             EEEeCCCCeEEEEecCCcEEEEECCCCceeeeeeeCeeeEEEEeeCCC--CcEEEEecCCCcEEEEeCCCC
Q 036314          191 SVVWPQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEG--SALIAAGGSDPILRIWDPRKP  259 (347)
Q Consensus       191 ~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~la~~~~d~~i~iwd~~~~  259 (347)
                        ..|.++.+++++.|+.|..||.++++.+-.+.... .....+..+.  ...+++++.|+.++.||.+..
T Consensus       126 --~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~-~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG  193 (369)
T 2hz6_A          126 --LSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD-YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESG  193 (369)
T ss_dssp             ---------EEEEEEEEEEECCCSSSSSCCCEEEEEE-ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTC
T ss_pred             --ccccCCEEEEEecCCEEEEEECCCCCEEEeEeccc-ccCccccCCccccceEEEECCCCEEEEEECCCC
Confidence              11466788899999999999999987654433211 1112222211  024556778999999998753

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.80  E-value=4.4e-07  Score=82.20  Aligned_cols=223  Identities=10%  Similarity=0.018  Sum_probs=123.9

Q ss_pred             CcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEee----------CCCcEEEEecCCCCCCCccce
Q 036314           90 QTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGS----------WDCTISLWRTNDSDAAGNQVS  159 (347)
Q Consensus        90 g~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs----------~Dg~I~iwd~~~~~~~~~~~~  159 (347)
                      ++|.+.|..+.+.         +.++.--..+  .++++|||++++.+.          .+++|.++|..+........ 
T Consensus        99 ~~VsVID~~t~~v---------v~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~-  166 (426)
T 3c75_H           99 TQQFVIDGSTGRI---------LGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIE-  166 (426)
T ss_dssp             EEEEEEETTTTEE---------EEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEE-
T ss_pred             CeEEEEECCCCEE---------EEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEE-
Confidence            7999999887653         3333332345  799999999888775          47789999987653211100 


Q ss_pred             eeeccCCCccccccccccccccccCCccceEEEEe-CCCCeEEEEec--CCcEEEEECCCCceeeeeeeCeeeEEEEeeC
Q 036314          160 IKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW-PQQETIYSASW--DHSVRTWDVEMGKDLSDIFCGKALNCIDIGG  236 (347)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~l~s~s~--dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~  236 (347)
                         .....            +...+  ..-..+.+ +++++++.+..  +++|.+.|+.+.+.+..+.....   ..+.+
T Consensus       167 ---v~g~~------------r~~~g--~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~---~~~~p  226 (426)
T 3c75_H          167 ---LPDAP------------RFLVG--TYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC---YHIFP  226 (426)
T ss_dssp             ---ETTCC------------CCCBS--CCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE---EEEEE
T ss_pred             ---CCCcc------------ccccC--CCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc---eeecc
Confidence               00000            00000  00112333 68888887764  57899999999988777654321   11111


Q ss_pred             CCCcEEEEecCCCcEEEEeCCCCC-------------CC-----------CC---------eEEec--CC----------
Q 036314          237 EGSALIAAGGSDPILRIWDPRKPG-------------TS-----------AP---------VFQFS--SH----------  271 (347)
Q Consensus       237 ~~~~~la~~~~d~~i~iwd~~~~~-------------~~-----------~~---------~~~~~--~h----------  271 (347)
                      .+...+++.+.||++.+.+.....             .+           ..         +..+.  +.          
T Consensus       227 ~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~  306 (426)
T 3c75_H          227 ASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEA  306 (426)
T ss_dssp             EETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEES
T ss_pred             CCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeee
Confidence            111222222233333333321000             00           00         00000  00          


Q ss_pred             -----------CCCeeEEEeCCCCCeEEEEEeC---------CCcEEEEEcCCCccceeecCCCCeEEEEeecC-CC-EE
Q 036314          272 -----------NSWISACKWHNKSWFHLISASY---------DGKVMLWDLRTAWPLSVIDSHKDKVLCADWWR-GD-SV  329 (347)
Q Consensus       272 -----------~~~v~~v~~s~~~~~~l~s~s~---------D~~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~-~~-~l  329 (347)
                                 ......++++|++.+++++...         +++|.++|..+.+.+.++... ...+++.|++ |+ ++
T Consensus       307 ~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg-~~P~gia~spDg~~~l  385 (426)
T 3c75_H          307 LTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELG-HEIDSINVSQDAEPLL  385 (426)
T ss_dssp             SCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECCSSSCEE
T ss_pred             ccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECC-CCcCeEEEccCCCEEE
Confidence                       0011126788888765555431         357999999999888887532 2578899975 66 66


Q ss_pred             EEcc-CCceEEEeeccc
Q 036314          330 ISGG-VDSKLCVSSGVS  345 (347)
Q Consensus       330 ~s~s-~D~~v~vw~~~~  345 (347)
                      .++. .+++|.|++..+
T Consensus       386 yv~n~~s~~VsVID~~t  402 (426)
T 3c75_H          386 YALSAGTQTLHIYDAAT  402 (426)
T ss_dssp             EEEETTTTEEEEEETTT
T ss_pred             EEEcCCCCeEEEEECCC
Confidence            6666 599999998753

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.76  E-value=2.3e-07  Score=81.03  Aligned_cols=139  Identities=15%  Similarity=0.126  Sum_probs=80.9

Q ss_pred             EEeCCCCeEEEEecCCcEEEEECCCCceeeeeeeC-eeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecC
Q 036314          192 VVWPQQETIYSASWDHSVRTWDVEMGKDLSDIFCG-KALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSS  270 (347)
Q Consensus       192 ~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~  270 (347)
                      +....+..++.++  +.|..+| .+++........ ..+.++...++ +. +..++.++.+..+|...    .....+..
T Consensus       182 ~~~d~~g~l~v~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~-g~-l~v~t~~~gl~~~~~~g----~~~~~~~~  252 (330)
T 3hxj_A          182 ASIGKDGTIYFGS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISED-GT-IYVTSLDGHLYAINPDG----TEKWRFKT  252 (330)
T ss_dssp             CEECTTCCEEEES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTT-SC-EEEEETTTEEEEECTTS----CEEEEEEC
T ss_pred             eEEcCCCEEEEEe--CEEEEEC-CCCcEEEEEccCCcceeceEECCC-Ce-EEEEcCCCeEEEECCCC----CEeEEeeC
Confidence            3443334455555  7899999 666654433322 23445555443 33 44566678888887431    12334443


Q ss_pred             CCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecCCCCeEEEEeecCCCEEEEccCCceEEEee
Q 036314          271 HNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKVLCADWWRGDSVISGGVDSKLCVSS  342 (347)
Q Consensus       271 h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~D~~v~vw~  342 (347)
                      ....+.++...+++  .|..++.++.+..+|. +++....+......+.++...++..|..++.+|.+++-.
T Consensus       253 ~~~~~~~~~~~~~g--~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~l~~gt~~G~~~~~~  321 (330)
T 3hxj_A          253 GKRIESSPVIGNTD--TIYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGTIYFGTRNGKFYALF  321 (330)
T ss_dssp             SSCCCSCCEECTTS--CEEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCCEEEECTTSCEEEEE
T ss_pred             CCCccccceEcCCC--eEEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCEEEEEcCCCeEEEEe
Confidence            44444555666555  3777888889999996 566555554334445555553444566678899888754

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.75  E-value=1.3e-05  Score=71.55  Aligned_cols=260  Identities=9%  Similarity=-0.001  Sum_probs=142.7

Q ss_pred             CCEEEEEecCCeEEEEcC-CCeEEEEeecc---------CCceEEEEEeecCCCceEEEEEccCCCcEEEEecccccccc
Q 036314           35 PGFILTGCYDNLGRVWKA-GGVCTHILEGH---------CGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVN  104 (347)
Q Consensus        35 ~~~l~sg~~d~~i~iw~~-~~~~~~~l~~h---------~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~  104 (347)
                      ++.+..++.++.+..+|. .|+.+..+...         ...+.+.-... ++    .|+.++.++.|..+|..+++..-
T Consensus        53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~v~v~~~~g~l~a~d~~tG~~~W  127 (376)
T 3q7m_A           53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVS-GG----HVYIGSEKAQVYALNTSDGTVAW  127 (376)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEE-TT----EEEEEETTSEEEEEETTTCCEEE
T ss_pred             CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceEe-CC----EEEEEcCCCEEEEEECCCCCEEE
Confidence            567888888999999997 47766554432         12222211112 22    46778889999999998775321


Q ss_pred             CccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccC
Q 036314          105 HPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVG  184 (347)
Q Consensus       105 ~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (347)
                               ...............  +..++.++.++.+..+|..++......      ...          .....+..
T Consensus       128 ---------~~~~~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~------~~~----------~~~~~~~~  180 (376)
T 3q7m_A          128 ---------QTKVAGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTV------NLD----------MPSLSLRG  180 (376)
T ss_dssp             ---------EEECSSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEE------ECC----------C-----CC
T ss_pred             ---------EEeCCCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEE------eCC----------CCceeecC
Confidence                     111111101111112  446777888999999998765321100      000          00000011


Q ss_pred             CccceEEEEeCCCCeEEEEecCCcEEEEECCCCceeeeeeeCee-----------e-EEEEeeCCCCcEEEEecCCCcEE
Q 036314          185 HTQCVSSVVWPQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKA-----------L-NCIDIGGEGSALIAAGGSDPILR  252 (347)
Q Consensus       185 h~~~v~~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~-----------~-~~~~~~~~~~~~la~~~~d~~i~  252 (347)
                      ...++.     .+..++.++.++.+..+|.++++.+-......+           + ....+  .+ ..+..++.++.+.
T Consensus       181 ~~~~~~-----~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~--~~-~~v~~~~~~g~l~  252 (376)
T 3q7m_A          181 ESAPTT-----AFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVV--VN-GVVFALAYNGNLT  252 (376)
T ss_dssp             CCCCEE-----ETTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEE--ET-TEEEEECTTSCEE
T ss_pred             CCCcEE-----ECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEE--EC-CEEEEEecCcEEE
Confidence            111111     245677888899999999998876544332211           0 00011  12 3456677889999


Q ss_pred             EEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecCCC-CeEEEEeecCCCEEEE
Q 036314          253 IWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHK-DKVLCADWWRGDSVIS  331 (347)
Q Consensus       253 iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h~-~~v~~~~~~~~~~l~s  331 (347)
                      .+|++...   .+....  ......+...  +. .|..++.++.+..+|.++++.+-...... ..+..... .+..|..
T Consensus       253 ~~d~~tG~---~~w~~~--~~~~~~~~~~--~~-~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~-~~~~l~v  323 (376)
T 3q7m_A          253 ALDLRSGQ---IMWKRE--LGSVNDFIVD--GN-RIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL-YNGNLVV  323 (376)
T ss_dssp             EEETTTCC---EEEEEC--CCCEEEEEEE--TT-EEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE-ETTEEEE
T ss_pred             EEECCCCc---EEeecc--CCCCCCceEE--CC-EEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEE-ECCEEEE
Confidence            99986432   222222  2233444443  33 47778889999999999987654443111 11122222 2456777


Q ss_pred             ccCCceEEEeec
Q 036314          332 GGVDSKLCVSSG  343 (347)
Q Consensus       332 ~s~D~~v~vw~~  343 (347)
                      ++.+|.|.+++.
T Consensus       324 ~~~~g~l~~~d~  335 (376)
T 3q7m_A          324 GDSEGYLHWINV  335 (376)
T ss_dssp             ECTTSEEEEEET
T ss_pred             EeCCCeEEEEEC
Confidence            777888887763

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=98.74  E-value=2.6e-05  Score=69.69  Aligned_cols=240  Identities=8%  Similarity=-0.092  Sum_probs=135.4

Q ss_pred             eccCC-CCCEEEEEe----------cCCeEEEEcCC-CeEEEEeecc-------CCceEEEEEeecCCCceEEEEEccC-
Q 036314           29 AVDGS-NPGFILTGC----------YDNLGRVWKAG-GVCTHILEGH-------CGAVSSVNIIKSDGLKYVTVATASK-   88 (347)
Q Consensus        29 ~~~~~-~~~~l~sg~----------~d~~i~iw~~~-~~~~~~l~~h-------~~~V~~v~~~~~~~~~~~~l~s~s~-   88 (347)
                      .+.++ ++++|..+.          .++.|.+||.. .+.+..+.--       ...-..++|+|++.    +|+.++. 
T Consensus        70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~----~l~v~n~~  145 (373)
T 2mad_H           70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNA----DLLFFQFA  145 (373)
T ss_pred             CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCC----EEEEEecC
Confidence            67777 455666554          36789999974 3444333211       12234788888543    5665553 


Q ss_pred             -CCcEEEEeccccccccCccccceeee-eeccccceEEEEEeCCC-CEEEEeeCCCcEEEEecCCCCCCCccceeeeccC
Q 036314           89 -DQTLRLWKFDAEELVNHPKKIRSFKI-LRGHKASVHSIAAETSG-NMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKG  165 (347)
Q Consensus        89 -Dg~v~~wd~~~~~~~~~~~~~~~~~~-~~~h~~~V~~v~~s~~~-~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~  165 (347)
                       +++|.++| .+++..         .. +.- ..   ++.+.+++ +.+++.+.||++.+++. ++.....    ...  
T Consensus       146 ~~~~v~viD-~t~~~~---------~~~i~~-~~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~----~~~--  204 (373)
T 2mad_H          146 AGPAVGLVV-QGGSSD---------DQLLSS-PT---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGA----GLV--  204 (373)
T ss_pred             CCCeEEEEE-CCCCEE---------eEEcCC-Cc---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEE----Eec--
Confidence             57899999 876532         22 211 11   23445555 46667788999999988 5422100    000  


Q ss_pred             CCccccccccccccccccCCccce-EEEEe-CCCCeEEEEecCCcEEEEECCCCce--eeeeee-----------CeeeE
Q 036314          166 NNQVEEPQLEGEAISTLVGHTQCV-SSVVW-PQQETIYSASWDHSVRTWDVEMGKD--LSDIFC-----------GKALN  230 (347)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~h~~~v-~~~~~-~~~~~l~s~s~dg~v~vwd~~~~~~--~~~~~~-----------~~~~~  230 (347)
                                 ..  .+.+ ..++ ....+ +++..++..+..+.+.+.|+.....  +..+..           .....
T Consensus       205 -----------~~--~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~  270 (373)
T 2mad_H          205 -----------GA--MLTA-AQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQ  270 (373)
T ss_pred             -----------cc--cccC-CcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceE
Confidence                       00  0000 0111 11111 3344444445778888899865421  122210           11123


Q ss_pred             EEEeeCCCCcEEEEec---------CCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEe-CCCcEEEE
Q 036314          231 CIDIGGEGSALIAAGG---------SDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISAS-YDGKVMLW  300 (347)
Q Consensus       231 ~~~~~~~~~~~la~~~---------~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s-~D~~i~lw  300 (347)
                      .+.+++++..++++..         .++.|.++|+...   +.+.++.. ......++|+||+.++|+++. .++.|.++
T Consensus       271 ~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~---~vv~~i~~-g~~p~~i~~s~Dg~~~l~v~~~~~~~V~Vi  346 (373)
T 2mad_H          271 QVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVG---QTSSQISL-GHDVDAISVAQDGGPDLYALSAGTEVLHIY  346 (373)
T ss_pred             eEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCC---EEEEEEEC-CCCcCeEEECCCCCeEEEEEcCCCCeEEEE
Confidence            3566666665555432         2468999998643   22345532 235788999999985677777 58999999


Q ss_pred             EcCCCccceee
Q 036314          301 DLRTAWPLSVI  311 (347)
Q Consensus       301 d~~~~~~~~~~  311 (347)
                      |.++++.+.++
T Consensus       347 D~~t~~vv~~i  357 (373)
T 2mad_H          347 DAGAGDQDQST  357 (373)
T ss_pred             ECCCCCEEeee
Confidence            99999888773

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.73  E-value=7.7e-07  Score=79.18  Aligned_cols=67  Identities=7%  Similarity=-0.144  Sum_probs=49.3

Q ss_pred             EEeCCCCCeEEEEEe---C-----CCcEEEEEcCCCccceeecCCCCeEEEEeecC-CC-EEEEcc-CCceEEEeeccc
Q 036314          278 CKWHNKSWFHLISAS---Y-----DGKVMLWDLRTAWPLSVIDSHKDKVLCADWWR-GD-SVISGG-VDSKLCVSSGVS  345 (347)
Q Consensus       278 v~~s~~~~~~l~s~s---~-----D~~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~-~~-~l~s~s-~D~~v~vw~~~~  345 (347)
                      ++++|++.+++++..   .     ++.+.++|+.+++.+.++.... ...++.|++ |+ .+++.. .+++|.|++..+
T Consensus       269 v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t  346 (368)
T 1mda_H          269 VAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAAS  346 (368)
T ss_dssp             EEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSS
T ss_pred             eEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCC
Confidence            679999887665544   2     2356699999998888775433 678899985 55 467777 599999999753

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.71  E-value=5.2e-07  Score=78.78  Aligned_cols=254  Identities=13%  Similarity=0.061  Sum_probs=137.9

Q ss_pred             CCCCCEEEEEecCCeEEEEcCCCeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccce
Q 036314           32 GSNPGFILTGCYDNLGRVWKAGGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRS  111 (347)
Q Consensus        32 ~~~~~~l~sg~~d~~i~iw~~~~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~  111 (347)
                      ...++.|..++.++.+..||..+.....+..+...+.++.+.+++     .|..++.+  |..+|. +++..-.      
T Consensus        27 ~d~~g~l~v~t~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~g-----~l~v~t~~--l~~~d~-~g~~~~~------   92 (330)
T 3hxj_A           27 LAKNGTIYLGSSNKNLYAINTDGSVKWFFKSGEIIECRPSIGKDG-----TIYFGSDK--VYAINP-DGTEKWR------   92 (330)
T ss_dssp             ECTTSCEECSSTTTTTEEECTTSCEEESSCGGGEEEECCEETTTT-----EECCSSCE--EEEECC-CGGGGGG------
T ss_pred             EccCCeEEEEcCCCEEEEECCCCcEEEEEecCCCcccceEEecCC-----cEEEecCc--EEEECC-CCcEEEE------
Confidence            334556777778888999996576655555444444555543322     35556655  888886 3332110      


Q ss_pred             eeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEE
Q 036314          112 FKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSS  191 (347)
Q Consensus       112 ~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~  191 (347)
                         +..+........+.  +..++.++.++.+..+|.. +...                         .....+...+.+
T Consensus        93 ---~~~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~-------------------------~~~~~~~~~~~~  141 (330)
T 3hxj_A           93 ---FDTKKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEK-------------------------WRFKTKKAIYAT  141 (330)
T ss_dssp             ---SCC-----CCEEEE--TTEEEEECTTSEEEEECTT-SCEE-------------------------EEEECSSCCCSC
T ss_pred             ---EECCCCcccCceEE--CCEEEEEecCCEEEEEcCC-CCEE-------------------------EEEcCCCceeee
Confidence               11111111122233  4456668888999999865 3210                         000111112222


Q ss_pred             EEeCCCCeEEEEecCCcEEEEECCCCceeeeeeeC-eeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecC
Q 036314          192 VVWPQQETIYSASWDHSVRTWDVEMGKDLSDIFCG-KALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSS  270 (347)
Q Consensus       192 ~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~  270 (347)
                      +....+..++.++.++.|..+|.. ++........ ..+.++.... ++.+.+ ++  +.+..+| ...   .....+..
T Consensus       142 ~~~~~~g~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~-~g~l~v-~t--~~l~~~d-~~g---~~~~~~~~  212 (330)
T 3hxj_A          142 PIVSEDGTIYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGK-DGTIYF-GS--DKVYAIN-PDG---TEKWNFYA  212 (330)
T ss_dssp             CEECTTSCEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECT-TCCEEE-ES--SSEEEEC-TTS---CEEEEECC
T ss_pred             eEEcCCCEEEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcC-CCEEEE-Ee--CEEEEEC-CCC---cEEEEEcc
Confidence            333334557777888999999988 6655444322 2333444433 334443 44  7899998 322   22344444


Q ss_pred             CCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecCCCCeEEEEeecCCCEEEEccCCceEEEee
Q 036314          271 HNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKVLCADWWRGDSVISGGVDSKLCVSS  342 (347)
Q Consensus       271 h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~D~~v~vw~  342 (347)
                      ....+.++...+++.  |..++.++.+..+|. +++.+..+......+.++...++..|..++.++.|..++
T Consensus       213 ~~~~~~~~~~~~~g~--l~v~t~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~ggl~~~d  281 (330)
T 3hxj_A          213 GYWTVTRPAISEDGT--IYVTSLDGHLYAINP-DGTEKWRFKTGKRIESSPVIGNTDTIYFGSYDGHLYAIN  281 (330)
T ss_dssp             SSCCCSCCEECTTSC--EEEEETTTEEEEECT-TSCEEEEEECSSCCCSCCEECTTSCEEEECTTCEEEEEC
T ss_pred             CCcceeceEECCCCe--EEEEcCCCeEEEECC-CCCEeEEeeCCCCccccceEcCCCeEEEecCCCCEEEEC
Confidence            455677888888763  666777888888875 444444443333323333444344566667776776665

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.71  E-value=1.5e-06  Score=76.85  Aligned_cols=245  Identities=8%  Similarity=-0.017  Sum_probs=133.9

Q ss_pred             CceEEEEEeecCCCceEEEEEcc--CCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeC---
Q 036314           65 GAVSSVNIIKSDGLKYVTVATAS--KDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSW---  139 (347)
Q Consensus        65 ~~V~~v~~~~~~~~~~~~l~s~s--~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~---  139 (347)
                      ..+..|++++++    +.+++..  .++.++||.+..+++...+. ..  ....+|...+..++++++++++++...   
T Consensus        17 ~~p~~va~~~~g----~~~v~~~~~~~~~~~l~~~~~g~~~~~p~-~~--~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~   89 (343)
T 2qe8_A           17 LAPGNITLTPDG----RLFLSLHQFYQPEMQVAELTQDGLIPFPP-QS--GNAIITFDTVLGIKSDGNGIVWMLDNGNQS   89 (343)
T ss_dssp             SCEEEEEECTTS----CEEEEECGGGCCSCSEEEEETTEEEESCC-CC--SSCCCCCSCEEEEEECSSSEEEEEECHHHH
T ss_pred             CCcceEEECCCC----CEEEEeCCCCCCceEEEEECCCCeecCCC-cc--cCcccceeEeeEEEEcCCCcEEEEcCCCCc
Confidence            567889998743    3456642  33446777765444321111 00  112246678999999999987765543   


Q ss_pred             --CCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEeC-CCCeE-EEEe---cCCcEEEE
Q 036314          140 --DCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWP-QQETI-YSAS---WDHSVRTW  212 (347)
Q Consensus       140 --Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~l-~s~s---~dg~v~vw  212 (347)
                        +..|.+||+.++....    .....               .....+......+++. ++..+ ++-.   .++.|.+|
T Consensus        90 ~~~~~i~~~d~~tg~~~~----~~~~~---------------~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~  150 (343)
T 2qe8_A           90 KSVPKLVAWDTLNNQLSR----VIYLP---------------PPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRV  150 (343)
T ss_dssp             TSCCEEEEEETTTTEEEE----EEECC---------------TTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEE
T ss_pred             CCCCeEEEEECCCCeEEE----EEECC---------------hhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEE
Confidence              6789999987542100    00000               0001122334566664 44454 4444   67899999


Q ss_pred             ECCCCceeeeeee--------------C----------------eeeEEEEeeCCCCcEEEEecCCCcEEEEeCCC--CC
Q 036314          213 DVEMGKDLSDIFC--------------G----------------KALNCIDIGGEGSALIAAGGSDPILRIWDPRK--PG  260 (347)
Q Consensus       213 d~~~~~~~~~~~~--------------~----------------~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~--~~  260 (347)
                      |+.+++....+..              +                .....+++++++..++++......+..++...  ..
T Consensus       151 d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~  230 (343)
T 2qe8_A          151 DLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNL  230 (343)
T ss_dssp             ETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCT
T ss_pred             ECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCC
Confidence            9987654432211              0                12456788776544444444444565555321  00


Q ss_pred             CCC-----CeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecC-CCCeEEEEeec-CCCEEEEcc
Q 036314          261 TSA-----PVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDS-HKDKVLCADWW-RGDSVISGG  333 (347)
Q Consensus       261 ~~~-----~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~-h~~~v~~~~~~-~~~~l~s~s  333 (347)
                      ...     ......++......+++++++ .++++...++.|.+||.++++....... +-..+.+++|. +|..+++.+
T Consensus       231 ~~~~~~~~~~~~~~g~~g~pdgia~d~~G-~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~  309 (343)
T 2qe8_A          231 QLTDAELGSKIERYSEKPICDGISIDKDH-NIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCN  309 (343)
T ss_dssp             TCCHHHHHTTCEEEEECCSCSCEEECTTC-CEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEEC
T ss_pred             CCChhhhhcceEecccCCCCceEEECCCC-CEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeC
Confidence            000     001122333455678899987 4677778889999999955543222221 23457889996 466666655


Q ss_pred             CCc
Q 036314          334 VDS  336 (347)
Q Consensus       334 ~D~  336 (347)
                      ..+
T Consensus       310 ~~~  312 (343)
T 2qe8_A          310 QLH  312 (343)
T ss_dssp             CGG
T ss_pred             ccc
Confidence            443

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.68  E-value=6.2e-06  Score=74.30  Aligned_cols=192  Identities=11%  Similarity=0.158  Sum_probs=116.1

Q ss_pred             EEEEEccCCCcEEEEeccccccccCccccceeeeee------cc-ccceEEEEEeCCCCEEEEeeCC------CcEEEEe
Q 036314           81 VTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILR------GH-KASVHSIAAETSGNMVCSGSWD------CTISLWR  147 (347)
Q Consensus        81 ~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~------~h-~~~V~~v~~s~~~~~l~sgs~D------g~I~iwd  147 (347)
                      ..++++-.+++|.++|+.+.     +.+++..+++.      .+ ...-+.+...|+| +++++..+      +.|.+.|
T Consensus        97 ~l~v~~l~s~~I~viD~~t~-----p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD  170 (462)
T 2ece_A           97 FLIVPGLRSSRIYIIDTKPN-----PREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLD  170 (462)
T ss_dssp             EEEEEBTTTCCEEEEECCSC-----TTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEEC
T ss_pred             EEEEccCCCCeEEEEECCCC-----CCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEE
Confidence            56788889999999998643     12223333342      01 1234567778999 77776555      7899998


Q ss_pred             cCCCCCCCccceeeeccCCCcccccccccccccccc---CCccceEEEEe-CCCCeEEEEe-------------------
Q 036314          148 TNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLV---GHTQCVSSVVW-PQQETIYSAS-------------------  204 (347)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~h~~~v~~~~~-~~~~~l~s~s-------------------  204 (347)
                      .++.+..+                         .+.   +....-..+-| |+++.+++..                   
T Consensus       171 ~~T~~v~~-------------------------~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~  225 (462)
T 2ece_A          171 HYSFEPLG-------------------------KWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDR  225 (462)
T ss_dssp             TTTCCEEE-------------------------ECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHH
T ss_pred             CCCCeEEE-------------------------EEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhc
Confidence            87643211                         111   00011122333 5677777764                   


Q ss_pred             cCCcEEEEECCCCceeeeeeeC---eeeEEEEe--eCCCCcEEEEec-----CCCcEEEEeCCCCCCCCCeEEe--cC--
Q 036314          205 WDHSVRTWDVEMGKDLSDIFCG---KALNCIDI--GGEGSALIAAGG-----SDPILRIWDPRKPGTSAPVFQF--SS--  270 (347)
Q Consensus       205 ~dg~v~vwd~~~~~~~~~~~~~---~~~~~~~~--~~~~~~~la~~~-----~d~~i~iwd~~~~~~~~~~~~~--~~--  270 (347)
                      .+.+|.+||+.+++.+.++..+   .....+.|  ++++...++++-     .+++|.+|.... +.......+  ..  
T Consensus       226 ~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~-g~~~~~~vIdi~~~~  304 (462)
T 2ece_A          226 YGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYED-GKWNAEKVIEIPAEP  304 (462)
T ss_dssp             SCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEET-TEEEEEEEEEECCEE
T ss_pred             cCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecC-CceeEEEEEeCCCcc
Confidence            3689999999988777766654   23344444  666665555555     677887765432 111111110  00  


Q ss_pred             --------------CCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCC
Q 036314          271 --------------HNSWISACKWHNKSWFHLISASYDGKVMLWDLRT  304 (347)
Q Consensus       271 --------------h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~  304 (347)
                                    -......+.++||+.++.++.-..+.|.++|+..
T Consensus       305 v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d  352 (462)
T 2ece_A          305 LEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISN  352 (462)
T ss_dssp             CCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSS
T ss_pred             ccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecC
Confidence                          0234678999999988777777889999999964

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.65  E-value=7.3e-06  Score=72.98  Aligned_cols=243  Identities=8%  Similarity=0.024  Sum_probs=135.0

Q ss_pred             ccCC-CCCEEEEEe----------cCCeEEEEcCC-CeEEEEeecc-------CCceEEEEEeecCCCceEEEEEcc--C
Q 036314           30 VDGS-NPGFILTGC----------YDNLGRVWKAG-GVCTHILEGH-------CGAVSSVNIIKSDGLKYVTVATAS--K   88 (347)
Q Consensus        30 ~~~~-~~~~l~sg~----------~d~~i~iw~~~-~~~~~~l~~h-------~~~V~~v~~~~~~~~~~~~l~s~s--~   88 (347)
                      ++++ ++++|..++          .++.|.+||.. .+.+..+.-.       ...-..+.|+|++.    +|+.+.  .
T Consensus        83 va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk----~lyVan~~~  158 (386)
T 3sjl_D           83 PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGK----TLLFYQFSP  158 (386)
T ss_dssp             EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSS----EEEEEECSS
T ss_pred             EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCC----EEEEEEcCC
Confidence            6667 455554433          36789999975 4555544311       11235688888553    444444  3


Q ss_pred             CCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCc
Q 036314           89 DQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQ  168 (347)
Q Consensus        89 Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~  168 (347)
                      +++|.++|+.+.+.+         .++.-  ..+ ...+....+.+++.+.||++.+.++.+....   .  ......  
T Consensus       159 ~~~VsVID~~t~~vv---------~tI~v--~g~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v---~--~~~~~~--  219 (386)
T 3sjl_D          159 APAVGVVDLEGKAFK---------RMLDV--PDC-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTP---E--ITHTEV--  219 (386)
T ss_dssp             SCEEEEEETTTTEEE---------EEEEC--CSE-EEEEEEETTEEEEEETTSCEEEEECCSSSCC---E--EEECCC--
T ss_pred             CCeEEEEECCCCcEE---------EEEEC--CCc-ceeecCCCceeEEECCCCCEEEEECCCCCeE---E--Eeecce--
Confidence            789999999877543         22211  111 1223334567778888888888887642110   0  000000  


Q ss_pred             cccccccccccccccCCccceE-EEEe-CCCCeEEEEecCCcEEEEECCCCc--eeeeee--------e---CeeeEEEE
Q 036314          169 VEEPQLEGEAISTLVGHTQCVS-SVVW-PQQETIYSASWDHSVRTWDVEMGK--DLSDIF--------C---GKALNCID  233 (347)
Q Consensus       169 ~~~~~~~~~~~~~~~~h~~~v~-~~~~-~~~~~l~s~s~dg~v~vwd~~~~~--~~~~~~--------~---~~~~~~~~  233 (347)
                                   +..-...+. ...| +.+..++..+.+|++.+.|+..+.  .+..+.        .   ......+.
T Consensus       220 -------------~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a  286 (386)
T 3sjl_D          220 -------------FHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVA  286 (386)
T ss_dssp             -------------CSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEE
T ss_pred             -------------eccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceee
Confidence                         000000110 0123 223344446778999999987653  222222        0   11122355


Q ss_pred             eeCCCCcEEEEec---------CCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEE-EeCCCcEEEEEcC
Q 036314          234 IGGEGSALIAAGG---------SDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLIS-ASYDGKVMLWDLR  303 (347)
Q Consensus       234 ~~~~~~~~la~~~---------~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s-~s~D~~i~lwd~~  303 (347)
                      +++++..++++-.         ..+.|.++|+...+   .+.++.- ...+..++++||+..+|.+ ...++.|-++|..
T Consensus       287 ~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~k---v~~~i~v-g~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~  362 (386)
T 3sjl_D          287 YHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGE---RLAKFEM-GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAE  362 (386)
T ss_dssp             EETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCC---EEEEEEE-EEEECEEEECSSSSCEEEEEETTTTEEEEEETT
T ss_pred             ECCCCCeEEEEeccccccccCCCCCEEEEEECCCCe---EEEEEEC-CCCcceEEECCCCCeEEEEEcCCCCeEEEEECC
Confidence            6666665555432         13579999987532   2333322 1357789999998634555 4568999999999


Q ss_pred             CCccceeec
Q 036314          304 TAWPLSVID  312 (347)
Q Consensus       304 ~~~~~~~~~  312 (347)
                      +++.++++.
T Consensus       363 t~k~~~~i~  371 (386)
T 3sjl_D          363 SGEELRSVN  371 (386)
T ss_dssp             TCCEEEEEC
T ss_pred             CCcEEEEec
Confidence            998887764

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.64  E-value=3.2e-06  Score=74.65  Aligned_cols=201  Identities=8%  Similarity=-0.038  Sum_probs=117.4

Q ss_pred             cceEEEEEeCCCCEEEEee--CCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEeCCC
Q 036314          120 ASVHSIAAETSGNMVCSGS--WDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWPQQ  197 (347)
Q Consensus       120 ~~V~~v~~s~~~~~l~sgs--~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~  197 (347)
                      ..+..++++++|+++++..  .++.++||.+.++.    .   ...        +...    ....+|-..+.++++...
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~----~---~~~--------p~~~----~~~~~~~~~p~gv~~d~~   77 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDG----L---IPF--------PPQS----GNAIITFDTVLGIKSDGN   77 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTE----E---EES--------CCCC----SSCCCCCSCEEEEEECSS
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCC----e---ecC--------CCcc----cCcccceeEeeEEEEcCC
Confidence            5688999999999998864  23436667654211    0   000        0000    011234456788888544


Q ss_pred             CeEEEEec------CCcEEEEECCCCceeeeeeeC-------eeeEEEEeeCCCCcEEEEec---CCCcEEEEeCCCCCC
Q 036314          198 ETIYSASW------DHSVRTWDVEMGKDLSDIFCG-------KALNCIDIGGEGSALIAAGG---SDPILRIWDPRKPGT  261 (347)
Q Consensus       198 ~~l~s~s~------dg~v~vwd~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~la~~~---~d~~i~iwd~~~~~~  261 (347)
                      ..|+.+..      ++.|.+||+.+++.+..+...       ..+..+++.+.++.++++..   .++.|.+||+.... 
T Consensus        78 g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~-  156 (343)
T 2qe8_A           78 GIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGL-  156 (343)
T ss_dssp             SEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCC-
T ss_pred             CcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCC-
Confidence            45544432      478999999988766555432       23467888766566666655   67899999986321 


Q ss_pred             CCCeEEecCC-----------------------------CCCeeEEEeCCCCCeEEEEEeCCC-cEEEEEcC---CCc--
Q 036314          262 SAPVFQFSSH-----------------------------NSWISACKWHNKSWFHLISASYDG-KVMLWDLR---TAW--  306 (347)
Q Consensus       262 ~~~~~~~~~h-----------------------------~~~v~~v~~s~~~~~~l~s~s~D~-~i~lwd~~---~~~--  306 (347)
                        ....+.+|                             ...+..++|+|++.. |..+..++ .+..++..   .+.  
T Consensus       157 --~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~-ly~~~~~~~~l~~~~~~~~~~~~~~  233 (343)
T 2qe8_A          157 --AARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEW-LYLSPMHSTSMYRIKSADLSNLQLT  233 (343)
T ss_dssp             --EEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCE-EEEEESSCSEEEEEEHHHHTCTTCC
T ss_pred             --EEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCE-EEEEeCCCCeEEEEEHHHhcCCCCC
Confidence              11112111                             123578999999865 55555554 44444432   111  


Q ss_pred             ---cce--eecCCCCeEEEEeec-CCCEEEEccCCceEEEeec
Q 036314          307 ---PLS--VIDSHKDKVLCADWW-RGDSVISGGVDSKLCVSSG  343 (347)
Q Consensus       307 ---~~~--~~~~h~~~v~~~~~~-~~~~l~s~s~D~~v~vw~~  343 (347)
                         ...  ...++.+...++++. +|..+++...++.|.+|+-
T Consensus       234 ~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~  276 (343)
T 2qe8_A          234 DAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITS  276 (343)
T ss_dssp             HHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEET
T ss_pred             hhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEEC
Confidence               001  112344445567775 5777888888899999974

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.62  E-value=2.4e-06  Score=77.35  Aligned_cols=248  Identities=7%  Similarity=-0.016  Sum_probs=137.7

Q ss_pred             CeEEEEcCC-CeEEEEeeccCCceEEEEEeecCCCceEEEEEcc----------CCCcEEEEeccccccccCccccceee
Q 036314           45 NLGRVWKAG-GVCTHILEGHCGAVSSVNIIKSDGLKYVTVATAS----------KDQTLRLWKFDAEELVNHPKKIRSFK  113 (347)
Q Consensus        45 ~~i~iw~~~-~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s----------~Dg~v~~wd~~~~~~~~~~~~~~~~~  113 (347)
                      ++|.+.|.. .+.+..+.--..+  .+.++|++.    .|+.+.          .++.|.++|..+.+..         .
T Consensus        99 ~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk----~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv---------~  163 (426)
T 3c75_H           99 TQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGS----FFAQASTVFERIARGKRTDYVEVFDPVTFLPI---------A  163 (426)
T ss_dssp             EEEEEEETTTTEEEEEEEECSSC--EEEECTTSS----CEEEEEEEEEETTEEEEEEEEEEECTTTCCEE---------E
T ss_pred             CeEEEEECCCCEEEEEEECCCCC--ceEECCCCC----EEEEEeccccccccCCCCCEEEEEECCCCcEE---------E
Confidence            689999975 5556655533334  799999654    244333          4678999998876532         2


Q ss_pred             eee-c------cccceEEEEEeCCCCEEEEeeC--CCcEEEEecCCCCCCCccce-----e--ee-------ccCCCccc
Q 036314          114 ILR-G------HKASVHSIAAETSGNMVCSGSW--DCTISLWRTNDSDAAGNQVS-----I--KK-------RKGNNQVE  170 (347)
Q Consensus       114 ~~~-~------h~~~V~~v~~s~~~~~l~sgs~--Dg~I~iwd~~~~~~~~~~~~-----~--~~-------~~~~~~~~  170 (347)
                      .+. +      .......++|+|||++++.+..  +++|.+.|+.+.........     .  ..       ........
T Consensus       164 ~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~  243 (426)
T 3c75_H          164 DIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLAR  243 (426)
T ss_dssp             EEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEE
T ss_pred             EEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEE
Confidence            221 1      0122345789999999998774  57899999987643211100     0  00       00000000


Q ss_pred             ccccccccc----ccccCCccceE-EEEe-CCCCeEEEEecCCcEEEEECCCCcee--eeeee--------C---eeeEE
Q 036314          171 EPQLEGEAI----STLVGHTQCVS-SVVW-PQQETIYSASWDHSVRTWDVEMGKDL--SDIFC--------G---KALNC  231 (347)
Q Consensus       171 ~~~~~~~~~----~~~~~h~~~v~-~~~~-~~~~~l~s~s~dg~v~vwd~~~~~~~--~~~~~--------~---~~~~~  231 (347)
                      .....++..    ..+.....++. .+.+ ++++.++..+..+++.+.|+......  ..+..        .   .....
T Consensus       244 V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~  323 (426)
T 3c75_H          244 VDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQ  323 (426)
T ss_dssp             EECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSC
T ss_pred             EECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCcee
Confidence            000000000    00000011110 1122 45566666677888999998654311  11110        0   11112


Q ss_pred             EEeeCCCCcEEEEec---------CCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEe-CCCcEEEEE
Q 036314          232 IDIGGEGSALIAAGG---------SDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISAS-YDGKVMLWD  301 (347)
Q Consensus       232 ~~~~~~~~~~la~~~---------~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s-~D~~i~lwd  301 (347)
                      +.+++++..++++..         .++.|.++|+...+   .+.++... .....+.|+||+..+|+++. .++.|-++|
T Consensus       324 va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~k---vv~~I~vg-~~P~gia~spDg~~~lyv~n~~s~~VsVID  399 (426)
T 3c75_H          324 TAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGE---RINKIELG-HEIDSINVSQDAEPLLYALSAGTQTLHIYD  399 (426)
T ss_dssp             EEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCC---EEEEEEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEE
T ss_pred             eEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCe---EEEEEECC-CCcCeEEEccCCCEEEEEEcCCCCeEEEEE
Confidence            567776666665532         24579999987532   24444322 24678999999974566666 699999999


Q ss_pred             cCCCccceee
Q 036314          302 LRTAWPLSVI  311 (347)
Q Consensus       302 ~~~~~~~~~~  311 (347)
                      ..+++.++++
T Consensus       400 ~~t~kvv~tI  409 (426)
T 3c75_H          400 AATGEELRSV  409 (426)
T ss_dssp             TTTCCEEEEE
T ss_pred             CCCCCEEEEe
Confidence            9999888876

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.60  E-value=0.00017  Score=60.93  Aligned_cols=245  Identities=13%  Similarity=0.057  Sum_probs=138.9

Q ss_pred             EEEEEecCCeEEEEcCCCeEE------EEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccc
Q 036314           37 FILTGCYDNLGRVWKAGGVCT------HILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIR  110 (347)
Q Consensus        37 ~l~sg~~d~~i~iw~~~~~~~------~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~  110 (347)
                      +|+.+.. +.|+.++..+...      ..+.........+++.+.++   ...++-...+.|..++++....        
T Consensus         3 ~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~---~ly~~d~~~~~I~~~~~~g~~~--------   70 (267)
T 1npe_A            3 HLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDK---VVYWTDISEPSIGRASLHGGEP--------   70 (267)
T ss_dssp             EEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTT---EEEEEETTTTEEEEEESSSCCC--------
T ss_pred             EEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCC---EEEEEECCCCEEEEEecCCCCc--------
Confidence            3444433 3677777654321      12222223467888887543   3456666778999999865421        


Q ss_pred             eeeeeeccccceEEEEEeCCCC-EEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccce
Q 036314          111 SFKILRGHKASVHSIAAETSGN-MVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCV  189 (347)
Q Consensus       111 ~~~~~~~h~~~V~~v~~s~~~~-~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v  189 (347)
                       ...+.........+++++++. +.++-...+.|.+++......    .                   .+  ........
T Consensus        71 -~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~----~-------------------~~--~~~~~~~P  124 (267)
T 1npe_A           71 -TTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR----R-------------------VL--FDTGLVNP  124 (267)
T ss_dssp             -EEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC----E-------------------EE--ECSSCSSE
T ss_pred             -EEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCE----E-------------------EE--EECCCCCc
Confidence             111222224568899998755 555556678899888753210    0                   00  00001223


Q ss_pred             EEEEe-CCCCeEEEEec---CCcEEEEECCCCceeeeeee--CeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCC
Q 036314          190 SSVVW-PQQETIYSASW---DHSVRTWDVEMGKDLSDIFC--GKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSA  263 (347)
Q Consensus       190 ~~~~~-~~~~~l~s~s~---dg~v~vwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~  263 (347)
                      ..+++ ++++.|+.+..   .+.|..+++.. .....+..  ......++++++++.++++....+.|..+|+....   
T Consensus       125 ~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg-~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~---  200 (267)
T 1npe_A          125 RGIVTDPVRGNLYWTDWNRDNPKIETSHMDG-TNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPG---  200 (267)
T ss_dssp             EEEEEETTTTEEEEEECCSSSCEEEEEETTS-CCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEE---
T ss_pred             cEEEEeeCCCEEEEEECCCCCcEEEEEecCC-CCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCc---
Confidence            56666 44666655554   35788888653 22222221  12456788887777777777778999999986321   


Q ss_pred             CeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecCCC-CeEEEEeecCC
Q 036314          264 PVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHK-DKVLCADWWRG  326 (347)
Q Consensus       264 ~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h~-~~v~~~~~~~~  326 (347)
                      ....+. .......++..  +.+++++...++.|.++|..+++.+.++.... ...+++++.|+
T Consensus       201 ~~~~~~-~~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~  261 (267)
T 1npe_A          201 RRKVLE-GLQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALS  261 (267)
T ss_dssp             EEEEEE-CCCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECS
T ss_pred             eEEEec-CCCCceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEccccccccceeeecCc
Confidence            111222 22333455553  44556665667899999999888777764322 24566776544

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.60  E-value=9.3e-06  Score=78.59  Aligned_cols=292  Identities=12%  Similarity=0.126  Sum_probs=150.7

Q ss_pred             CCEEEEEecCCeEEEEcC-CCeEEEEeeccCCc----------e-EEEEEeecCCCceEEEEEccCCCcEEEEecccccc
Q 036314           35 PGFILTGCYDNLGRVWKA-GGVCTHILEGHCGA----------V-SSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEEL  102 (347)
Q Consensus        35 ~~~l~sg~~d~~i~iw~~-~~~~~~~l~~h~~~----------V-~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~  102 (347)
                      ++.|..++.++.+..+|. +|+.+..+..+...          + ..+.+.  ++    .|+.++.|+.|..+|..+++.
T Consensus        70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~--~g----~v~v~~~dg~l~AlDa~TG~~  143 (689)
T 1yiq_A           70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVW--KG----KVYVGVLDGRLEAIDAKTGQR  143 (689)
T ss_dssp             TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEE--TT----EEEEECTTSEEEEEETTTCCE
T ss_pred             CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEE--CC----EEEEEccCCEEEEEECCCCCE
Confidence            567777888899999996 57777666533221          1 112221  22    477888999999999988864


Q ss_pred             ccCcccc-ceeeeeeccccceEEEEEeCCCCEEEEee-----CCCcEEEEecCCCCCCCccceeeeccCCCccc------
Q 036314          103 VNHPKKI-RSFKILRGHKASVHSIAAETSGNMVCSGS-----WDCTISLWRTNDSDAAGNQVSIKKRKGNNQVE------  170 (347)
Q Consensus       103 ~~~~~~~-~~~~~~~~h~~~V~~v~~s~~~~~l~sgs-----~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~------  170 (347)
                      +=..... ...........++  +   .++..++..+     .|+.|..||..+++.......   ........      
T Consensus       144 ~W~~~~~~~~~~~~~~~~sP~--v---~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~---~~~~p~~~~~~~~~  215 (689)
T 1yiq_A          144 AWSVDTRADHKRSYTITGAPR--V---VNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYT---VPGDPKLPPEGKGM  215 (689)
T ss_dssp             EEEEECCSCTTSCCBCCSCCE--E---ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEES---SCCCTTSCCCSHHH
T ss_pred             eeeecCcCCCCCCccccCCcE--E---ECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecc---cCCCcccccccccc
Confidence            3110000 0000000011121  1   1444444332     378999999987653211100   00000000      


Q ss_pred             ---cccccccccccccCCccceEEEEe-CCCCeEEEEecCCc-------------------EEEEECCCCceeeeeeeC-
Q 036314          171 ---EPQLEGEAISTLVGHTQCVSSVVW-PQQETIYSASWDHS-------------------VRTWDVEMGKDLSDIFCG-  226 (347)
Q Consensus       171 ---~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~l~s~s~dg~-------------------v~vwd~~~~~~~~~~~~~-  226 (347)
                         .....+.......++......+++ ++.+.++.++.++.                   |..+|.++++.+=..+.. 
T Consensus       216 ~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~  295 (689)
T 1yiq_A          216 EIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTP  295 (689)
T ss_dssp             HHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESST
T ss_pred             cccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCC
Confidence               000000000000011111112344 45677887777753                   999999999876444321 


Q ss_pred             ---------eeeEEEEeeCCC--CcEEEEecCCCcEEEEeCCCCCCCCCeEEec--------------------------
Q 036314          227 ---------KALNCIDIGGEG--SALIAAGGSDPILRIWDPRKPGTSAPVFQFS--------------------------  269 (347)
Q Consensus       227 ---------~~~~~~~~~~~~--~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~--------------------------  269 (347)
                               .+....++..++  ...++.++.+|.++++|.+..+. .-...+.                          
T Consensus       296 ~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~-l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~  374 (689)
T 1yiq_A          296 GDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGEL-LSAKGIVPQSWTKGMDMKTGRPILDEENAAYWK  374 (689)
T ss_dssp             TCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE-EEEEESSCCSSEEEEETTTTEEEECHHHHCTTT
T ss_pred             cccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCE-eccccccccccccccCccCCCcccchhhccccC
Confidence                     111122221122  12677888999999999865321 0000000                          


Q ss_pred             ------------CCCCCeeEEEeCCCCCeEEEEEeC--------------------------------------------
Q 036314          270 ------------SHNSWISACKWHNKSWFHLISASY--------------------------------------------  293 (347)
Q Consensus       270 ------------~h~~~v~~v~~s~~~~~~l~s~s~--------------------------------------------  293 (347)
                                  +...+ ..++++|+... +.....                                            
T Consensus       375 ~~~~~~~~p~~~Gg~~w-~~~a~dp~~~~-~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~  452 (689)
T 1yiq_A          375 NGKRNLVTPAFWGAHDW-QPMSYNPDTGL-VYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKS  452 (689)
T ss_dssp             SSSCEEESSCTTCSSCS-SCCEEETTTTE-EEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTT
T ss_pred             CCCeeEeCCCcccccCC-CcceECCCCCE-EEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCC
Confidence                        00111 12678887764 443311                                            


Q ss_pred             -CCcEEEEEcCCCccceeecCCCCeEEEEeec-CCCEEEEccCCceEEEeecc
Q 036314          294 -DGKVMLWDLRTAWPLSVIDSHKDKVLCADWW-RGDSVISGGVDSKLCVSSGV  344 (347)
Q Consensus       294 -D~~i~lwd~~~~~~~~~~~~h~~~v~~~~~~-~~~~l~s~s~D~~v~vw~~~  344 (347)
                       +|.|..||+++++.+-.+..+. .+....+. .+..+..++.|+.|+.|+--
T Consensus       453 ~~g~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~gt~dg~l~a~D~~  504 (689)
T 1yiq_A          453 WSGKLIAWDPVKQQAAWEVPYVT-IFNGGTLSTAGNLVFEGSADGRVIAYAAD  504 (689)
T ss_dssp             CEEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETT
T ss_pred             cceeEEEEECCCCCeEeEccCCC-CccCccceECCCEEEEECCCCcEEEEECC
Confidence             4789999999998665554433 23322333 57788889999999999843

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.49  E-value=2.2e-05  Score=76.01  Aligned_cols=76  Identities=16%  Similarity=0.212  Sum_probs=46.4

Q ss_pred             CCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecCCCCeE-EEEee-cC
Q 036314          248 DPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKV-LCADW-WR  325 (347)
Q Consensus       248 d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h~~~v-~~~~~-~~  325 (347)
                      ++.|+.||+...+   .+.++..+... ..-.+...+. +++.++.|+.++.||.++|+.+-.+....+.. .-+.| .+
T Consensus       454 ~g~l~A~D~~tG~---~~W~~~~~~~~-~~g~~~tagg-lvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~  528 (689)
T 1yiq_A          454 SGKLIAWDPVKQQ---AAWEVPYVTIF-NGGTLSTAGN-LVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVD  528 (689)
T ss_dssp             EEEEEEEETTTTE---EEEEEEESSSC-CCCEEEETTT-EEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEET
T ss_pred             ceeEEEEECCCCC---eEeEccCCCCc-cCccceECCC-EEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEEC
Confidence            3778899986432   23333333322 2223333443 58889999999999999999887775432221 23556 36


Q ss_pred             CCE
Q 036314          326 GDS  328 (347)
Q Consensus       326 ~~~  328 (347)
                      |++
T Consensus       529 G~q  531 (689)
T 1yiq_A          529 GEQ  531 (689)
T ss_dssp             TEE
T ss_pred             CEE
Confidence            765

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.43  E-value=6.5e-05  Score=72.53  Aligned_cols=267  Identities=12%  Similarity=0.057  Sum_probs=142.0

Q ss_pred             CCCEEEEEecCCeEEEEcC-CCeEEEEeecc-C----CceEE-EEEeecCCCceEEEEEccC------CCcEEEEecccc
Q 036314           34 NPGFILTGCYDNLGRVWKA-GGVCTHILEGH-C----GAVSS-VNIIKSDGLKYVTVATASK------DQTLRLWKFDAE  100 (347)
Q Consensus        34 ~~~~l~sg~~d~~i~iw~~-~~~~~~~l~~h-~----~~V~~-v~~~~~~~~~~~~l~s~s~------Dg~v~~wd~~~~  100 (347)
                      .++.|+.++.|+.+..+|. +|+.+..+..+ .    ..+.+ ..+ . ++    .++.++.      ++.|+.||..++
T Consensus       127 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v-~-~~----~v~v~~~~~~~~~~g~v~a~D~~tG  200 (677)
T 1kb0_A          127 WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV-F-KG----KVIIGNGGAEYGVRGYITAYDAETG  200 (677)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE-E-TT----EEEECCBCTTTCCBCEEEEEETTTC
T ss_pred             ECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEE-E-CC----EEEEEecccccCCCCEEEEEECCCC
Confidence            3567888889999999997 58777766654 1    11221 111 1 21    2344432      789999999888


Q ss_pred             ccccCcccccee--------------eeee---------ccccceEEEEEeCCCCEEEEeeCCC----------------
Q 036314          101 ELVNHPKKIRSF--------------KILR---------GHKASVHSIAAETSGNMVCSGSWDC----------------  141 (347)
Q Consensus       101 ~~~~~~~~~~~~--------------~~~~---------~h~~~V~~v~~s~~~~~l~sgs~Dg----------------  141 (347)
                      +.+-........              .+..         +.......+++++++.+++.++.++                
T Consensus       201 ~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~  280 (677)
T 1kb0_A          201 ERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNL  280 (677)
T ss_dssp             CEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCT
T ss_pred             cEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCe
Confidence            653110000000              0000         1111223578889888888777664                


Q ss_pred             ---cEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceE-EEEeCCC---CeEEEEecCCcEEEEEC
Q 036314          142 ---TISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVS-SVVWPQQ---ETIYSASWDHSVRTWDV  214 (347)
Q Consensus       142 ---~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~-~~~~~~~---~~l~s~s~dg~v~vwd~  214 (347)
                         +|..+|..+++.....    +....           ....+.....++. ... .++   +.++.++.+|.+.++|.
T Consensus       281 ~~~sv~AlD~~TG~~~W~~----~~~~~-----------d~wd~~~~~~p~l~~~~-~dG~~~~~l~~~~~~G~l~~lD~  344 (677)
T 1kb0_A          281 YLASIVALDPDTGKYKWHY----QETPG-----------DNWDYTSTQPMILADIK-IAGKPRKVILHAPKNGFFFVLDR  344 (677)
T ss_dssp             TTTEEEEECTTTCCEEEEE----ESSTT-----------CCSCCCCCSCCEEEEEE-ETTEEEEEEEECCTTSEEEEEET
T ss_pred             eeEEEEEEECCCCCEEEEE----ecCCC-----------cccccccCCCcEEEecc-cCCcEeeEEEEECCCCEEEEEEC
Confidence               3666666654321100    00000           0000000011111 111 144   56888999999999999


Q ss_pred             CCCceeeeeeeCe------------ee------------------------EEEEeeCCCCcEEEEecC-----------
Q 036314          215 EMGKDLSDIFCGK------------AL------------------------NCIDIGGEGSALIAAGGS-----------  247 (347)
Q Consensus       215 ~~~~~~~~~~~~~------------~~------------------------~~~~~~~~~~~~la~~~~-----------  247 (347)
                      ++++.+.......            ++                        ..+++++..+ ++.+...           
T Consensus       345 ~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~-~~yv~~~~~~~~~~~~~~  423 (677)
T 1kb0_A          345 TNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTG-LVYLPAQNVPVNLMDDKK  423 (677)
T ss_dssp             TTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTT-EEEEEEEECCCEEEECTT
T ss_pred             CCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCC-EEEEeChhcceeeecccc
Confidence            9998765443211            00                        1235555444 3333221           


Q ss_pred             --------------------------------CCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCC
Q 036314          248 --------------------------------DPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDG  295 (347)
Q Consensus       248 --------------------------------d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~  295 (347)
                                                      .+.|..||+...+   .+.++. +...+....+..++. +++.++.|+
T Consensus       424 ~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~---~~W~~~-~~~~~~~g~~~~~g~-~v~~g~~dg  498 (677)
T 1kb0_A          424 WEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQK---AAWSVE-HVSPWNGGTLTTAGN-VVFQGTADG  498 (677)
T ss_dssp             CCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTE---EEEEEE-ESSSCCCCEEEETTT-EEEEECTTS
T ss_pred             cccccccccccccccccccccccccccCCCCCccEEEEEeCCCCc---EEeecC-CCCCCcCcceEeCCC-EEEEECCCC
Confidence                                            2678899986432   233332 222233333444554 477789999


Q ss_pred             cEEEEEcCCCccceeecCCC-CeEEEEee-cCCCE
Q 036314          296 KVMLWDLRTAWPLSVIDSHK-DKVLCADW-WRGDS  328 (347)
Q Consensus       296 ~i~lwd~~~~~~~~~~~~h~-~~v~~~~~-~~~~~  328 (347)
                      .+++||.++++.+..+.-.. ....-+.| .+|++
T Consensus       499 ~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~  533 (677)
T 1kb0_A          499 RLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQ  533 (677)
T ss_dssp             EEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             cEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEE
Confidence            99999999999888775332 22223455 35664

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.40  E-value=7.5e-05  Score=72.10  Aligned_cols=284  Identities=14%  Similarity=0.145  Sum_probs=149.6

Q ss_pred             CCEEEEEecCCeEEEEcC-CCeEEEEeeccCC----------ce-EEEEEeecCCCceEEEEEccCCCcEEEEecccccc
Q 036314           35 PGFILTGCYDNLGRVWKA-GGVCTHILEGHCG----------AV-SSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEEL  102 (347)
Q Consensus        35 ~~~l~sg~~d~~i~iw~~-~~~~~~~l~~h~~----------~V-~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~  102 (347)
                      ++.|..++.++.+..+|. +|+.+..+.....          .+ ..+.+.  ++    .|+.++.|+.|..+|..+++.
T Consensus        77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~--~~----~v~v~~~dg~l~alD~~tG~~  150 (677)
T 1kb0_A           77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALW--KG----KVYVGAWDGRLIALDAATGKE  150 (677)
T ss_dssp             TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEE--TT----EEEEECTTSEEEEEETTTCCE
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEE--CC----EEEEEcCCCEEEEEECCCCCE
Confidence            566777778889999996 5777666553321          01 123322  22    477788999999999988764


Q ss_pred             ccCccccceeeeeecc-c----cceEEEEEeCCCCEEEEeeC------CCcEEEEecCCCCCCCccceeeeccCC-Cccc
Q 036314          103 VNHPKKIRSFKILRGH-K----ASVHSIAAETSGNMVCSGSW------DCTISLWRTNDSDAAGNQVSIKKRKGN-NQVE  170 (347)
Q Consensus       103 ~~~~~~~~~~~~~~~h-~----~~V~~v~~s~~~~~l~sgs~------Dg~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~  170 (347)
                      +-         .+..+ .    ..+.+.-.-.++ .++.++.      ++.|+.||..+++.......   .... ..+.
T Consensus       151 ~W---------~~~~~~~~~~~~~~~~~p~v~~~-~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~---~~~~~~~~~  217 (677)
T 1kb0_A          151 VW---------HQNTFEGQKGSLTITGAPRVFKG-KVIIGNGGAEYGVRGYITAYDAETGERKWRWFS---VPGDPSKPF  217 (677)
T ss_dssp             EE---------EEETTTTCCSSCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEES---SCCCTTSCC
T ss_pred             Ee---------eecCCcCcCcCcccccCcEEECC-EEEEEecccccCCCCEEEEEECCCCcEEEEecc---CCCCccccc
Confidence            31         11111 0    111110001134 4444443      78999999987653211100   0000 0000


Q ss_pred             c--------cccc--ccccccccCCccceEEEEe-CCCCeEEEEecCC-------------------cEEEEECCCCcee
Q 036314          171 E--------PQLE--GEAISTLVGHTQCVSSVVW-PQQETIYSASWDH-------------------SVRTWDVEMGKDL  220 (347)
Q Consensus       171 ~--------~~~~--~~~~~~~~~h~~~v~~~~~-~~~~~l~s~s~dg-------------------~v~vwd~~~~~~~  220 (347)
                      .        ..+.  +... ...+.......+++ ++++.++.++.++                   +|..+|.++++.+
T Consensus       218 ~~~~~~~g~~~w~~~g~~~-~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~  296 (677)
T 1kb0_A          218 EDESMKRAARTWDPSGKWW-EAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYK  296 (677)
T ss_dssp             SSHHHHHHHTTSCGGGCHH-HHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEE
T ss_pred             cccccccccccccccCcee-EeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEE
Confidence            0        0000  0000 00011111122344 4566777666553                   4899999999876


Q ss_pred             eeeeeC----------eeeEEEEeeCCCC--cEEEEecCCCcEEEEeCCCCCCCCCeEEec-------------------
Q 036314          221 SDIFCG----------KALNCIDIGGEGS--ALIAAGGSDPILRIWDPRKPGTSAPVFQFS-------------------  269 (347)
Q Consensus       221 ~~~~~~----------~~~~~~~~~~~~~--~~la~~~~d~~i~iwd~~~~~~~~~~~~~~-------------------  269 (347)
                      -..+..          ..........++.  ..++.++.+|.++++|.+..+.   +..+.                   
T Consensus       297 W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~---l~~~~~~~~~~~~~~d~~g~~~~~  373 (677)
T 1kb0_A          297 WHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKF---ISAKNFVPVNWASGYDKHGKPIGI  373 (677)
T ss_dssp             EEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE---EEEEESSCCSSEEEECTTSCEEEC
T ss_pred             EEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCE---eccccccccCcccccCCCCceeec
Confidence            443321          1112222212221  5678889999999999865321   21111                   


Q ss_pred             -----------------CCCCCeeEEEeCCCCCeEEEEEeC---------------------------------------
Q 036314          270 -----------------SHNSWISACKWHNKSWFHLISASY---------------------------------------  293 (347)
Q Consensus       270 -----------------~h~~~v~~v~~s~~~~~~l~s~s~---------------------------------------  293 (347)
                                       +...+ ..++++|++.. +.....                                       
T Consensus       374 ~~~~~~~~~~~~~P~~~G~~~w-~~~a~dp~~~~-~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~  451 (677)
T 1kb0_A          374 AAARDGSKPQDAVPGPYGAHNW-HPMSFNPQTGL-VYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPP  451 (677)
T ss_dssp             GGGGCTTSCEECSSCTTCSSCS-SCCEEETTTTE-EEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCC
T ss_pred             cccCcCCCccEECcCcccccCC-CCceEcCCCCE-EEEeChhcceeeecccccccccccccccccccccccccccccccC
Confidence                             01111 24678888765 444322                                       


Q ss_pred             ----CCcEEEEEcCCCccceeecCCCCeEEEEeec-CCCEEEEccCCceEEEeecc
Q 036314          294 ----DGKVMLWDLRTAWPLSVIDSHKDKVLCADWW-RGDSVISGGVDSKLCVSSGV  344 (347)
Q Consensus       294 ----D~~i~lwd~~~~~~~~~~~~h~~~v~~~~~~-~~~~l~s~s~D~~v~vw~~~  344 (347)
                          .+.|..||+++++.+-.+. +...+++..+. .+..+..++.|+.+++|+.-
T Consensus       452 ~~~~~g~l~A~D~~tG~~~W~~~-~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~  506 (677)
T 1kb0_A          452 KSKPFGRLLAWDPVAQKAAWSVE-HVSPWNGGTLTTAGNVVFQGTADGRLVAYHAA  506 (677)
T ss_dssp             CSCCEEEEEEEETTTTEEEEEEE-ESSSCCCCEEEETTTEEEEECTTSEEEEEETT
T ss_pred             CCCCccEEEEEeCCCCcEEeecC-CCCCCcCcceEeCCCEEEEECCCCcEEEEECC
Confidence                2789999999987655543 22333433343 56777888999999999854

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.37  E-value=9.7e-05  Score=62.27  Aligned_cols=190  Identities=9%  Similarity=0.036  Sum_probs=117.9

Q ss_pred             ceEEEEEeCCCCEEEEeeC--CCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEeCCCC
Q 036314          121 SVHSIAAETSGNMVCSGSW--DCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWPQQE  198 (347)
Q Consensus       121 ~V~~v~~s~~~~~l~sgs~--Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~  198 (347)
                      ....++|++++.+.++.+.  +++|++.|..+++.....                       .+..+ .....+++. ++
T Consensus        22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i-----------------------~l~~~-~fgeGi~~~-g~   76 (266)
T 2iwa_A           22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIH-----------------------KMDDS-YFGEGLTLL-NE   76 (266)
T ss_dssp             CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEE-----------------------ECCTT-CCEEEEEEE-TT
T ss_pred             CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEE-----------------------ecCCC-cceEEEEEe-CC
Confidence            3578999998766665553  689999998875421100                       00011 111234433 34


Q ss_pred             eEE-EEecCCcEEEEECCCCceeeeeeeC-eeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEec--CCC--
Q 036314          199 TIY-SASWDHSVRTWDVEMGKDLSDIFCG-KALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFS--SHN--  272 (347)
Q Consensus       199 ~l~-s~s~dg~v~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~--~h~--  272 (347)
                      .|+ +.-.++.+.++|..+.+.+.++..+ ..-  ..+.+++..++++. .++.|.++|+....   ....+.  .+.  
T Consensus        77 ~lyv~t~~~~~v~viD~~t~~v~~~i~~g~~~g--~glt~Dg~~l~vs~-gs~~l~viD~~t~~---v~~~I~Vg~~~~p  150 (266)
T 2iwa_A           77 KLYQVVWLKNIGFIYDRRTLSNIKNFTHQMKDG--WGLATDGKILYGSD-GTSILYEIDPHTFK---LIKKHNVKYNGHR  150 (266)
T ss_dssp             EEEEEETTCSEEEEEETTTTEEEEEEECCSSSC--CEEEECSSSEEEEC-SSSEEEEECTTTCC---EEEEEECEETTEE
T ss_pred             EEEEEEecCCEEEEEECCCCcEEEEEECCCCCe--EEEEECCCEEEEEC-CCCeEEEEECCCCc---EEEEEEECCCCcc
Confidence            554 4445689999999998888877644 222  22444666676665 58899999986432   223322  111  


Q ss_pred             -CCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecCC-------------CCeEEEEeecC-CC-EEEEccCCc
Q 036314          273 -SWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSH-------------KDKVLCADWWR-GD-SVISGGVDS  336 (347)
Q Consensus       273 -~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h-------------~~~v~~~~~~~-~~-~l~s~s~D~  336 (347)
                       ...+.+.|. ++ .+.+....++.|.+.|.++++.+.++.-.             .....+++|.+ ++ .++++....
T Consensus       151 ~~~~nele~~-dg-~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~  228 (266)
T 2iwa_A          151 VIRLNELEYI-NG-EVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWP  228 (266)
T ss_dssp             CCCEEEEEEE-TT-EEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCS
T ss_pred             cccceeEEEE-CC-EEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCC
Confidence             235677777 55 44555556789999999999887776421             13457899985 44 478887777


Q ss_pred             eEEEeec
Q 036314          337 KLCVSSG  343 (347)
Q Consensus       337 ~v~vw~~  343 (347)
                      +|.+-+.
T Consensus       229 ~v~~i~l  235 (266)
T 2iwa_A          229 KLFEIKL  235 (266)
T ss_dssp             EEEEEEE
T ss_pred             eEEEEEE
Confidence            7766543

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.30  E-value=0.0011  Score=55.76  Aligned_cols=219  Identities=6%  Similarity=-0.030  Sum_probs=123.1

Q ss_pred             CcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCC-EEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCc
Q 036314           90 QTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGN-MVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQ  168 (347)
Q Consensus        90 g~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~-~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~  168 (347)
                      +.|+.++++.....    .......+......+..+++++++. ++++-...+.|..++......    .          
T Consensus        10 ~~I~~~~~~g~~~~----~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~----~----------   71 (267)
T 1npe_A           10 GKIERLPLERNTMK----KTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP----T----------   71 (267)
T ss_dssp             EEEEEEEESSSCBC----GGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC----E----------
T ss_pred             CeEEEEEecCcccc----cccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCc----E----------
Confidence            47888887654311    0001111222234567899998655 555666678999998754211    0          


Q ss_pred             cccccccccccccccCCccceEEEEe-CCCCeEEEE-ecCCcEEEEECCCCceeeeee-eC-eeeEEEEeeCCCCcEEEE
Q 036314          169 VEEPQLEGEAISTLVGHTQCVSSVVW-PQQETIYSA-SWDHSVRTWDVEMGKDLSDIF-CG-KALNCIDIGGEGSALIAA  244 (347)
Q Consensus       169 ~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~l~s~-s~dg~v~vwd~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~la~  244 (347)
                                 ............+++ ++++.|+.+ ...+.|.++++.... ...+. .. .....+++++.++.++++
T Consensus        72 -----------~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~-~~~~~~~~~~~P~~i~vd~~~g~lyv~  139 (267)
T 1npe_A           72 -----------TIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ-RRVLFDTGLVNPRGIVTDPVRGNLYWT  139 (267)
T ss_dssp             -----------EEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECSSCSSEEEEEEETTTTEEEEE
T ss_pred             -----------EEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCC-EEEEEECCCCCccEEEEeeCCCEEEEE
Confidence                       000011123456666 345555444 456789999986432 22222 12 345778888766666666


Q ss_pred             ecC--CCcEEEEeCCCCCCCCCeEEe-cCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecCCCCeEEEE
Q 036314          245 GGS--DPILRIWDPRKPGTSAPVFQF-SSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKVLCA  321 (347)
Q Consensus       245 ~~~--d~~i~iwd~~~~~~~~~~~~~-~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h~~~v~~~  321 (347)
                      ...  .+.|..+++...  .  ...+ .........++++|++.++.++-...+.|.++|++.......+.+ .....++
T Consensus       140 ~~~~~~~~I~~~~~dg~--~--~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~-~~~P~gi  214 (267)
T 1npe_A          140 DWNRDNPKIETSHMDGT--N--RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG-LQYPFAV  214 (267)
T ss_dssp             ECCSSSCEEEEEETTSC--C--CEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEEC-CCSEEEE
T ss_pred             ECCCCCcEEEEEecCCC--C--cEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecC-CCCceEE
Confidence            543  468888887532  1  1222 223345688999998777677777788999999975433222332 2233455


Q ss_pred             eecCCCEEEEccCCceEEEeec
Q 036314          322 DWWRGDSVISGGVDSKLCVSSG  343 (347)
Q Consensus       322 ~~~~~~~l~s~s~D~~v~vw~~  343 (347)
                      +...+..+++....+.|.+.+.
T Consensus       215 ~~d~~~lyva~~~~~~v~~~d~  236 (267)
T 1npe_A          215 TSYGKNLYYTDWKTNSVIAMDL  236 (267)
T ss_dssp             EEETTEEEEEETTTTEEEEEET
T ss_pred             EEeCCEEEEEECCCCeEEEEeC
Confidence            5443444555555667766653

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.29  E-value=0.00017  Score=60.24  Aligned_cols=177  Identities=10%  Similarity=0.011  Sum_probs=108.2

Q ss_pred             eEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEeCCCCeEE
Q 036314          122 VHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWPQQETIY  201 (347)
Q Consensus       122 V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~  201 (347)
                      ...+.|+ ++.+..+.+.+|.|+++|+++++.....                        +.. .-.-..++...+....
T Consensus        57 tqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~------------------------l~~-~~FgeGit~~g~~Ly~  110 (268)
T 3nok_A           57 TQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME------------------------RLG-NIFAEGLASDGERLYQ  110 (268)
T ss_dssp             EEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE------------------------ECT-TCCEEEEEECSSCEEE
T ss_pred             cceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE------------------------CCC-CcceeEEEEeCCEEEE
Confidence            4678887 4677788899999999998875432110                        111 1111234443334444


Q ss_pred             EEecCCcEEEEECCCCceeeeeeeCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEec--CCC---CCee
Q 036314          202 SASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFS--SHN---SWIS  276 (347)
Q Consensus       202 s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~--~h~---~~v~  276 (347)
                      ..-.++.+.+||.++.+.+.++.....-..++  +++..++++. .++.|+++|+....   .+.++.  .+.   ..++
T Consensus       111 ltw~~~~v~V~D~~Tl~~~~ti~~~~eGwGLt--~Dg~~L~vSd-Gs~~l~~iDp~T~~---v~~~I~V~~~g~~v~~lN  184 (268)
T 3nok_A          111 LTWTEGLLFTWSGMPPQRERTTRYSGEGWGLC--YWNGKLVRSD-GGTMLTFHEPDGFA---LVGAVQVKLRGQPVELIN  184 (268)
T ss_dssp             EESSSCEEEEEETTTTEEEEEEECSSCCCCEE--EETTEEEEEC-SSSEEEEECTTTCC---EEEEEECEETTEECCCEE
T ss_pred             EEccCCEEEEEECCcCcEEEEEeCCCceeEEe--cCCCEEEEEC-CCCEEEEEcCCCCe---EEEEEEeCCCCccccccc
Confidence            45567889999999999888876543323333  3455555554 58999999987432   222222  222   2345


Q ss_pred             EEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecC-----------C-C-CeEEEEeecC-CC-EEEEc
Q 036314          277 ACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDS-----------H-K-DKVLCADWWR-GD-SVISG  332 (347)
Q Consensus       277 ~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~-----------h-~-~~v~~~~~~~-~~-~l~s~  332 (347)
                      .+.|. ++ .+.|..-.+..|.+.|.++++.+..+.-           + . +...+++|.+ ++ .++||
T Consensus       185 eLe~~-dG-~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          185 ELECA-NG-VIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             EEEEE-TT-EEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred             ccEEe-CC-EEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence            66776 55 4455555678999999999988776531           1 2 2446899975 33 46664

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.27  E-value=6e-05  Score=63.02  Aligned_cols=185  Identities=8%  Similarity=0.004  Sum_probs=109.8

Q ss_pred             CCceeeccCCCCCEEEEEecCCeEEEEcCC-CeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEecccccc
Q 036314           24 DDWVSAVDGSNPGFILTGCYDNLGRVWKAG-GVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEEL  102 (347)
Q Consensus        24 ~~~v~~~~~~~~~~l~sg~~d~~i~iw~~~-~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~  102 (347)
                      ..+...+.+.++.+.++.|.+|.|+..|+. ++.++.+.  ........+...++   ......-.++.+.+||.++.+.
T Consensus        54 ~~ftqGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~l--~~~~FgeGit~~g~---~Ly~ltw~~~~v~V~D~~Tl~~  128 (268)
T 3nok_A           54 NAFTQGLVFHQGHFFESTGHQGTLRQLSLESAQPVWMER--LGNIFAEGLASDGE---RLYQLTWTEGLLFTWSGMPPQR  128 (268)
T ss_dssp             TCCEEEEEEETTEEEEEETTTTEEEECCSSCSSCSEEEE--CTTCCEEEEEECSS---CEEEEESSSCEEEEEETTTTEE
T ss_pred             ccccceEEEECCEEEEEcCCCCEEEEEECCCCcEEeEEC--CCCcceeEEEEeCC---EEEEEEccCCEEEEEECCcCcE
Confidence            344566777666788899999999999974 55444331  12233322333332   2334456788999999877653


Q ss_pred             ccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccc
Q 036314          103 VNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTL  182 (347)
Q Consensus       103 ~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (347)
                               +.++.-- ..-..+  .+|++.|+.+..+++|.++|.++........                    +..-
T Consensus       129 ---------~~ti~~~-~eGwGL--t~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~--------------------V~~~  176 (268)
T 3nok_A          129 ---------ERTTRYS-GEGWGL--CYWNGKLVRSDGGTMLTFHEPDGFALVGAVQ--------------------VKLR  176 (268)
T ss_dssp             ---------EEEEECS-SCCCCE--EEETTEEEEECSSSEEEEECTTTCCEEEEEE--------------------CEET
T ss_pred             ---------EEEEeCC-CceeEE--ecCCCEEEEECCCCEEEEEcCCCCeEEEEEE--------------------eCCC
Confidence                     2333221 111233  3567777766668899999977643211100                    0000


Q ss_pred             cCCccceEEEEeCCCCeEEEEecCCcEEEEECCCCceeeeeeeC--------------eeeEEEEeeCCCCcEEEEe
Q 036314          183 VGHTQCVSSVVWPQQETIYSASWDHSVRTWDVEMGKDLSDIFCG--------------KALNCIDIGGEGSALIAAG  245 (347)
Q Consensus       183 ~~h~~~v~~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~la~~  245 (347)
                      ...-..++.+.|.++..++..-.++.|.+.|.++++.+..+...              ...+.+++.+....++++|
T Consensus       177 g~~v~~lNeLe~~dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          177 GQPVELINELECANGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             TEECCCEEEEEEETTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred             CcccccccccEEeCCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence            00011345566666644444445788999999999887766432              2457899988878888877

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.26  E-value=0.0002  Score=60.28  Aligned_cols=198  Identities=9%  Similarity=-0.014  Sum_probs=119.5

Q ss_pred             CceeeccCCC-CCEEEEEec--CCeEEEEcCC-CeEEEEee-ccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccc
Q 036314           25 DWVSAVDGSN-PGFILTGCY--DNLGRVWKAG-GVCTHILE-GHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDA   99 (347)
Q Consensus        25 ~~v~~~~~~~-~~~l~sg~~--d~~i~iw~~~-~~~~~~l~-~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~   99 (347)
                      .+...+.+++ +.+.++.|.  ++.|++.|.. ++.++.+. +.......+++.  ++   ...++.-.++.+.++|..+
T Consensus        21 ~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~---~lyv~t~~~~~v~viD~~t   95 (266)
T 2iwa_A           21 AFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NE---KLYQVVWLKNIGFIYDRRT   95 (266)
T ss_dssp             CCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TT---EEEEEETTCSEEEEEETTT
T ss_pred             CCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CC---EEEEEEecCCEEEEEECCC
Confidence            3456677775 445555553  5799999974 66666543 111122344443  22   3445566788999999876


Q ss_pred             cccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCcccccccccccc
Q 036314          100 EELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAI  179 (347)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (347)
                      .+.         +.++.--...  ...+++||+.++.+..+++|.++|.++........                    +
T Consensus        96 ~~v---------~~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~--------------------V  144 (266)
T 2iwa_A           96 LSN---------IKNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHN--------------------V  144 (266)
T ss_dssp             TEE---------EEEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEE--------------------C
T ss_pred             CcE---------EEEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEE--------------------E
Confidence            543         2333211011  13355678777666678899999987643211000                    0


Q ss_pred             ccccCCccceEEEEeCCCCeEEEEecCCcEEEEECCCCceeeeeeeC--------------eeeEEEEeeCCCCcEEEEe
Q 036314          180 STLVGHTQCVSSVVWPQQETIYSASWDHSVRTWDVEMGKDLSDIFCG--------------KALNCIDIGGEGSALIAAG  245 (347)
Q Consensus       180 ~~~~~h~~~v~~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~la~~  245 (347)
                      ..-...-...+.+.|.++..++....++.|.+.|.++++.+..+...              ...+.+++.+++..+++++
T Consensus       145 g~~~~p~~~~nele~~dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTg  224 (266)
T 2iwa_A          145 KYNGHRVIRLNELEYINGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTG  224 (266)
T ss_dssp             EETTEECCCEEEEEEETTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEE
T ss_pred             CCCCcccccceeEEEECCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEEC
Confidence            00000011245566655533344445789999999999988777542              2357899998888899999


Q ss_pred             cCCCcEEEEeCCC
Q 036314          246 GSDPILRIWDPRK  258 (347)
Q Consensus       246 ~~d~~i~iwd~~~  258 (347)
                      ...+++...++..
T Consensus       225 k~~~~v~~i~l~~  237 (266)
T 2iwa_A          225 KLWPKLFEIKLHL  237 (266)
T ss_dssp             TTCSEEEEEEEEE
T ss_pred             CCCCeEEEEEEec
Confidence            9999999998753

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.25  E-value=0.00035  Score=58.34  Aligned_cols=176  Identities=14%  Similarity=0.160  Sum_probs=106.4

Q ss_pred             eEEEEEeCCCCEEEEeeCCC--cEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCcc-ceEEEEeCCCC
Q 036314          122 VHSIAAETSGNMVCSGSWDC--TISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQ-CVSSVVWPQQE  198 (347)
Q Consensus       122 V~~v~~s~~~~~l~sgs~Dg--~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~  198 (347)
                      ...+.|+ ++.+..|.+.+|  .|+++|+.+++...                         .+.-... .-..++. .++
T Consensus        45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~-------------------------~~~l~~~~FgeGit~-~g~   97 (262)
T 3nol_A           45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQ-------------------------QIELGKRYFGEGISD-WKD   97 (262)
T ss_dssp             EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEE-------------------------EEECCTTCCEEEEEE-ETT
T ss_pred             cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEE-------------------------EEecCCccceeEEEE-eCC
Confidence            4778888 677777888876  89999988754211                         1110000 1122332 344


Q ss_pred             eEEEEe-cCCcEEEEECCCCceeeeeeeCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecC--CC---
Q 036314          199 TIYSAS-WDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSS--HN---  272 (347)
Q Consensus       199 ~l~s~s-~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~--h~---  272 (347)
                      .|+... .++.+.+||.++.+.+.++.....-..++  +++..++++- .++.|.++|+....   ...++.-  ..   
T Consensus        98 ~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~eG~glt--~dg~~L~~Sd-Gs~~i~~iDp~T~~---v~~~I~V~~~g~~~  171 (262)
T 3nol_A           98 KIVGLTWKNGLGFVWNIRNLRQVRSFNYDGEGWGLT--HNDQYLIMSD-GTPVLRFLDPESLT---PVRTITVTAHGEEL  171 (262)
T ss_dssp             EEEEEESSSSEEEEEETTTCCEEEEEECSSCCCCEE--ECSSCEEECC-SSSEEEEECTTTCS---EEEEEECEETTEEC
T ss_pred             EEEEEEeeCCEEEEEECccCcEEEEEECCCCceEEe--cCCCEEEEEC-CCCeEEEEcCCCCe---EEEEEEeccCCccc
Confidence            554444 47889999999999888877543222333  3555565554 47889999987432   2222221  11   


Q ss_pred             CCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecCC------------CCeEEEEeecC-CCE-EEEc
Q 036314          273 SWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSH------------KDKVLCADWWR-GDS-VISG  332 (347)
Q Consensus       273 ~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h------------~~~v~~~~~~~-~~~-l~s~  332 (347)
                      ..++.+.|. ++ .+.+..-.+..|.+.|.++++.+..+.-.            .+...+++|.| +++ +++|
T Consensus       172 ~~lNELe~~-~G-~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG  243 (262)
T 3nol_A          172 PELNELEWV-DG-EIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG  243 (262)
T ss_dssp             CCEEEEEEE-TT-EEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred             cccceeEEE-CC-EEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence            334556775 55 44555556889999999999887765321            12446899976 444 5554

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.24  E-value=0.0019  Score=58.27  Aligned_cols=216  Identities=12%  Similarity=0.032  Sum_probs=121.8

Q ss_pred             EEEEEecCCeEEEEcCC-C----eEEEEee------ccC-CceEEEEEeecCCCceEEEEEccCC------CcEEEEecc
Q 036314           37 FILTGCYDNLGRVWKAG-G----VCTHILE------GHC-GAVSSVNIIKSDGLKYVTVATASKD------QTLRLWKFD   98 (347)
Q Consensus        37 ~l~sg~~d~~i~iw~~~-~----~~~~~l~------~h~-~~V~~v~~~~~~~~~~~~l~s~s~D------g~v~~wd~~   98 (347)
                      ++++|..+++|.+.|.. .    +..+++.      ... ..-..+.+.|++     .++++..+      |.|.+.|..
T Consensus        98 l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-----i~Vs~~g~~~g~~~g~v~vlD~~  172 (462)
T 2ece_A           98 LIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-----IYISALGNEEGEGPGGILMLDHY  172 (462)
T ss_dssp             EEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-----EEEEEEEETTSCSCCEEEEECTT
T ss_pred             EEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-----EEEEcCCCcCCCCCCeEEEEECC
Confidence            56677788999999973 2    3445552      111 122345566632     34455554      789999987


Q ss_pred             ccccccCccccceeeeee--ccc-cceEEEEEeCCCCEEEEee-------------------CCCcEEEEecCCCCCCCc
Q 036314           99 AEELVNHPKKIRSFKILR--GHK-ASVHSIAAETSGNMVCSGS-------------------WDCTISLWRTNDSDAAGN  156 (347)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~--~h~-~~V~~v~~s~~~~~l~sgs-------------------~Dg~I~iwd~~~~~~~~~  156 (347)
                      +.+.+         .++.  ... .--..+.|+|+++.+++..                   .+.+|.+||+.+...   
T Consensus       173 T~~v~---------~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~---  240 (462)
T 2ece_A          173 SFEPL---------GKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKR---  240 (462)
T ss_dssp             TCCEE---------EECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEE---
T ss_pred             CCeEE---------EEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcE---
Confidence            66543         2222  111 1123467899999999885                   378999999875311   


Q ss_pred             cceeeeccCCCccccccccccccccccC--CccceEEEEe---CCCCeEEEEe------cCCcEEEEECCCCcee--ee-
Q 036314          157 QVSIKKRKGNNQVEEPQLEGEAISTLVG--HTQCVSSVVW---PQQETIYSAS------WDHSVRTWDVEMGKDL--SD-  222 (347)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~---~~~~~l~s~s------~dg~v~vwd~~~~~~~--~~-  222 (347)
                                            ++++.-  .......+.|   |++++++.+.      .+++|.+|....+...  .. 
T Consensus       241 ----------------------~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vI  298 (462)
T 2ece_A          241 ----------------------IHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVI  298 (462)
T ss_dssp             ----------------------EEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEE
T ss_pred             ----------------------eeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEE
Confidence                                  111111  0011222322   5667665555      5667876554333210  00 


Q ss_pred             -eee-----------------CeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCC------------
Q 036314          223 -IFC-----------------GKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHN------------  272 (347)
Q Consensus       223 -~~~-----------------~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~------------  272 (347)
                       +..                 ......+.+++++..+.++.-..+.|.+||+..+...+.+..+.-..            
T Consensus       299 di~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~  378 (462)
T 2ece_A          299 EIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHK  378 (462)
T ss_dssp             EECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCC
T ss_pred             eCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeecccccccccc
Confidence             000                 12345677888877777777778999999986443333333332210            


Q ss_pred             --CCeeEEEeCCCCCeEEEEE
Q 036314          273 --SWISACKWHNKSWFHLISA  291 (347)
Q Consensus       273 --~~v~~v~~s~~~~~~l~s~  291 (347)
                        .+-..+.++|||.+++++-
T Consensus       379 ~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          379 LTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             CCSCCCCEEECTTSSEEEEEC
T ss_pred             CCCCCCEEEEcCCCCEEEEEc
Confidence              1246789999998755554

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.17  E-value=0.0003  Score=58.78  Aligned_cols=185  Identities=13%  Similarity=0.056  Sum_probs=109.4

Q ss_pred             CCceeeccCCCCCEEEEEecCC--eEEEEcCC-CeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEecccc
Q 036314           24 DDWVSAVDGSNPGFILTGCYDN--LGRVWKAG-GVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAE  100 (347)
Q Consensus        24 ~~~v~~~~~~~~~~l~sg~~d~--~i~iw~~~-~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~  100 (347)
                      ..+...+.|+++.+.++.|.+|  .|+..|+. ++.++.+.-.. ......+...++   ......-.++.+.+||.++.
T Consensus        42 ~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~---~ly~ltw~~~~v~v~D~~t~  117 (262)
T 3nol_A           42 KAFTEGFFYRNGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKD---KIVGLTWKNGLGFVWNIRNL  117 (262)
T ss_dssp             TCEEEEEEEETTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETT---EEEEEESSSSEEEEEETTTC
T ss_pred             CcccceEEEECCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeCC---EEEEEEeeCCEEEEEECccC
Confidence            3445677777666778888876  89999975 66665554322 333333333332   23344556889999998765


Q ss_pred             ccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccc
Q 036314          101 ELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAIS  180 (347)
Q Consensus       101 ~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (347)
                      +.         +.++.--..   ...+.+|++.|+.+..+++|.++|.++........                    + 
T Consensus       118 ~~---------~~ti~~~~e---G~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~--------------------V-  164 (262)
T 3nol_A          118 RQ---------VRSFNYDGE---GWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTIT--------------------V-  164 (262)
T ss_dssp             CE---------EEEEECSSC---CCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEE--------------------C-
T ss_pred             cE---------EEEEECCCC---ceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEE--------------------e-
Confidence            43         233332111   12334567777666667889999877643211100                    0 


Q ss_pred             cccCCc-cceEEEEeCCCCeEEEEecCCcEEEEECCCCceeeeeeeC-------------eeeEEEEeeCCCCcEEEEe
Q 036314          181 TLVGHT-QCVSSVVWPQQETIYSASWDHSVRTWDVEMGKDLSDIFCG-------------KALNCIDIGGEGSALIAAG  245 (347)
Q Consensus       181 ~~~~h~-~~v~~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~la~~  245 (347)
                      ...+.. ..++.+.|.++...+..-.++.|.+.|.++++.+..+...             ...+.+++.+....++++|
T Consensus       165 ~~~g~~~~~lNELe~~~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG  243 (262)
T 3nol_A          165 TAHGEELPELNELEWVDGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG  243 (262)
T ss_dssp             EETTEECCCEEEEEEETTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred             ccCCccccccceeEEECCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence            000111 2234456656544444445788999999999887766532             2357899988877777776

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.11  E-value=0.00023  Score=66.38  Aligned_cols=189  Identities=11%  Similarity=0.069  Sum_probs=113.8

Q ss_pred             CCCCEEEEe-eCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEe---CCCCeEEEEe
Q 036314          129 TSGNMVCSG-SWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW---PQQETIYSAS  204 (347)
Q Consensus       129 ~~~~~l~sg-s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~---~~~~~l~s~s  204 (347)
                      +||++++.. ..+..|.+.|+.+.+...                      .+ .+.. ......+++   |++++++.++
T Consensus        99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~----------------------ii-~ip~-g~~phg~~~~~~p~~~~v~~~~  154 (595)
T 1fwx_A           99 YDGRFLFMNDKANTRVARVRCDVMKCDA----------------------IL-EIPN-AKGIHGLRPQKWPRSNYVFCNG  154 (595)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEE----------------------EE-ECSS-CCSEEEEEECCSSBCSEEEEEE
T ss_pred             cCCCEEEEEcCCCCEEEEEECCCceEee----------------------EE-eCCC-CCCCcceeeeecCCCcEEEEec
Confidence            378877655 445679999987643211                      00 1111 012344443   6777776663


Q ss_pred             ------------------cCCcEEEEECCCCceeeeeeeCeeeEEEEeeCCCCcEEEEecCC------------------
Q 036314          205 ------------------WDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEGSALIAAGGSD------------------  248 (347)
Q Consensus       205 ------------------~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~d------------------  248 (347)
                                        .++.+.+.|..+.+...++..+....-+++++++...++++...                  
T Consensus       155 ~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~  234 (595)
T 1fwx_A          155 EDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIV  234 (595)
T ss_dssp             CSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEE
T ss_pred             ccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEE
Confidence                              45678999999887777766533445566666555444443222                  


Q ss_pred             -------------------CcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCc---
Q 036314          249 -------------------PILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAW---  306 (347)
Q Consensus       249 -------------------~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~---  306 (347)
                                         +.|.+.|.+.......+..+.. ......+.++|||.+.++++..+.+|.++|+++.+   
T Consensus       235 V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~  313 (595)
T 1fwx_A          235 VFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVF  313 (595)
T ss_dssp             EEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHH
T ss_pred             EeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECccccccc
Confidence                               2466777654111111223322 12345689999999888888899999999998642   


Q ss_pred             ---------cceeecCCCCeEEEEeecC-CCEEEEccCCceEEEeec
Q 036314          307 ---------PLSVIDSHKDKVLCADWWR-GDSVISGGVDSKLCVSSG  343 (347)
Q Consensus       307 ---------~~~~~~~h~~~v~~~~~~~-~~~l~s~s~D~~v~vw~~  343 (347)
                               ......- ....+-++|++ |...++.-.|+.|.+|+.
T Consensus       314 ~~~l~~~~~v~~~v~v-G~gP~h~aF~~dG~aY~t~~ldsqV~kwdi  359 (595)
T 1fwx_A          314 YENADPRSAVVAEPEL-GLGPLHTAFDGRGNAYTSLFLDSQVVKWNI  359 (595)
T ss_dssp             HSCCCGGGGEEECCBC-CSCEEEEEECTTSEEEEEETTTTEEEEEEH
T ss_pred             ccccCcccceEEEcCC-CCCcceEEECCCCeEEEEEecCCcEEEEEh
Confidence                     1222322 13467889975 644667778999999984

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.10  E-value=0.00062  Score=65.58  Aligned_cols=291  Identities=14%  Similarity=0.128  Sum_probs=144.9

Q ss_pred             CCEEEEEecCCeEEEEcC-CCeEEEEeeccCCc----------e-EEEEEeecCCCceEEEEEccCCCcEEEEecccccc
Q 036314           35 PGFILTGCYDNLGRVWKA-GGVCTHILEGHCGA----------V-SSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEEL  102 (347)
Q Consensus        35 ~~~l~sg~~d~~i~iw~~-~~~~~~~l~~h~~~----------V-~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~  102 (347)
                      ++.|..++.++.+..+|. +|+.+..+......          + ..+.+.  +    ..|+.++.|+.|..+|..+++.
T Consensus        66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~--~----~~v~v~~~dg~l~alD~~tG~~  139 (668)
T 1kv9_A           66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALW--G----DKVYVGTLDGRLIALDAKTGKA  139 (668)
T ss_dssp             TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEE--B----TEEEEECTTSEEEEEETTTCCE
T ss_pred             CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEEE--C----CEEEEEcCCCEEEEEECCCCCE
Confidence            567777788899999996 57776665433211          1 112222  1    1467788999999999988764


Q ss_pred             ccCccccceeeeeeccccceEEEEEeCCCCEEEEeeC------CCcEEEEecCCCCCCCccceeeeccCCCcc--c----
Q 036314          103 VNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSW------DCTISLWRTNDSDAAGNQVSIKKRKGNNQV--E----  170 (347)
Q Consensus       103 ~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~------Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~--~----  170 (347)
                      +=................++  +   .++ .++.+..      ++.|..+|..+++.......   .......  .    
T Consensus       140 ~W~~~~~~~~~~~~~~~~P~--v---~~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~---~~~~p~~~~~~~~~  210 (668)
T 1kv9_A          140 IWSQQTTDPAKPYSITGAPR--V---VKG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYT---VPGDPALPYEHPEL  210 (668)
T ss_dssp             EEEEECSCTTSSCBCCSCCE--E---ETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEES---SCCCTTSCCSSHHH
T ss_pred             eeeeccCCCCCcceecCCCE--E---ECC-EEEEeCCCCCcCCCCEEEEEECCCCcEEEEecc---cCCCCCcccccccc
Confidence            31100000000000011121  1   134 4444432      58899999887653211100   0000000  0    


Q ss_pred             ---cccccccccccccCCccceEEEEe-CCCCeEEEEecCC-------------------cEEEEECCCCceeeeeeeC-
Q 036314          171 ---EPQLEGEAISTLVGHTQCVSSVVW-PQQETIYSASWDH-------------------SVRTWDVEMGKDLSDIFCG-  226 (347)
Q Consensus       171 ---~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~l~s~s~dg-------------------~v~vwd~~~~~~~~~~~~~-  226 (347)
                         .....+..+....++......+++ +..+.++.++.++                   .|..+|.++++.+=..+.. 
T Consensus       211 ~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~  290 (668)
T 1kv9_A          211 REAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTP  290 (668)
T ss_dssp             HHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESST
T ss_pred             ccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCC
Confidence               000000000000011111122344 4556777776665                   3899999999876444321 


Q ss_pred             ---------eeeEEEEeeCCCC--cEEEEecCCCcEEEEeCCCCCCCCCeEEecCCC-CC--------------------
Q 036314          227 ---------KALNCIDIGGEGS--ALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHN-SW--------------------  274 (347)
Q Consensus       227 ---------~~~~~~~~~~~~~--~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~-~~--------------------  274 (347)
                               .+....++..++.  ..++.++.+|.++++|.+..+.   +....... .+                    
T Consensus       291 ~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~---l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~  367 (668)
T 1kv9_A          291 GDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKL---ISAEKFGKVTWAEKVDLATGRPVEAPGVRYE  367 (668)
T ss_dssp             TCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE---EEEEESSCCCSEEEECTTTCCEEECTTTTCS
T ss_pred             CccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCE---eccccccccccccccccccCCcccccccccc
Confidence                     1222222211221  2577888999999999765321   11100000 00                    


Q ss_pred             ---------------eeEEEeCCCCCeEEEE-----------------------------------EeCCCcEEEEEcCC
Q 036314          275 ---------------ISACKWHNKSWFHLIS-----------------------------------ASYDGKVMLWDLRT  304 (347)
Q Consensus       275 ---------------v~~v~~s~~~~~~l~s-----------------------------------~s~D~~i~lwd~~~  304 (347)
                                     -..++++|+...+.+.                                   ...+|.|..||+++
T Consensus       368 ~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~t  447 (668)
T 1kv9_A          368 KEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVK  447 (668)
T ss_dssp             SSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTT
T ss_pred             CCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCC
Confidence                           0125666765543321                                   12348899999999


Q ss_pred             CccceeecCCCCeEEEEee-cCCCEEEEccCCceEEEeecc
Q 036314          305 AWPLSVIDSHKDKVLCADW-WRGDSVISGGVDSKLCVSSGV  344 (347)
Q Consensus       305 ~~~~~~~~~h~~~v~~~~~-~~~~~l~s~s~D~~v~vw~~~  344 (347)
                      ++.+-.+..+. ....... -.+..+..++.|+.|++|+..
T Consensus       448 G~~~W~~~~~~-~~~~~~~~t~gg~vf~g~~dg~l~a~d~~  487 (668)
T 1kv9_A          448 QKAAWKVPYPT-HWNGGTLSTAGNLVFQGTAAGQMHAYSAD  487 (668)
T ss_dssp             TEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETT
T ss_pred             CcEEEEccCCC-CCcCceeEeCCCEEEEECCcccchhhhhh
Confidence            87654443222 2222222 246788888999999999753

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.09  E-value=0.0003  Score=65.61  Aligned_cols=96  Identities=15%  Similarity=0.133  Sum_probs=69.7

Q ss_pred             CcEEEEECCC--Cce-eeeeeeCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCC-----CC----CCeEEecCCCCC
Q 036314          207 HSVRTWDVEM--GKD-LSDIFCGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPG-----TS----APVFQFSSHNSW  274 (347)
Q Consensus       207 g~v~vwd~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~-----~~----~~~~~~~~h~~~  274 (347)
                      +.|.+.|.++  ++. +..+..+....++.++|++..+++++..+++|.++|.....     ..    ....++. -...
T Consensus       254 ~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~g  332 (595)
T 1fwx_A          254 NGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLG  332 (595)
T ss_dssp             TTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSC
T ss_pred             CcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-CCCC
Confidence            4699999987  555 55666666677889988888888888899999999987321     00    0112222 2234


Q ss_pred             eeEEEeCCCCCeEEEEEeCCCcEEEEEcCC
Q 036314          275 ISACKWHNKSWFHLISASYDGKVMLWDLRT  304 (347)
Q Consensus       275 v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~  304 (347)
                      -.-++|+|+| +..++.-.|++|-+||+.+
T Consensus       333 P~h~aF~~dG-~aY~t~~ldsqV~kwdi~~  361 (595)
T 1fwx_A          333 PLHTAFDGRG-NAYTSLFLDSQVVKWNIED  361 (595)
T ss_dssp             EEEEEECTTS-EEEEEETTTTEEEEEEHHH
T ss_pred             cceEEECCCC-eEEEEEecCCcEEEEEhhH
Confidence            5678999999 6666777899999999977

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.06  E-value=0.0046  Score=53.56  Aligned_cols=133  Identities=12%  Similarity=-0.014  Sum_probs=77.4

Q ss_pred             CcEEEEECCCCceeeeeeeCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCe
Q 036314          207 HSVRTWDVEMGKDLSDIFCGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWF  286 (347)
Q Consensus       207 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~  286 (347)
                      +.|..||..+++.............+++++++..++++-...+.|..||+.... ......+..... ...+++.++|..
T Consensus       165 g~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~-~~~~~~~~~~~g-P~gi~~d~~G~l  242 (322)
T 2fp8_A          165 GRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPK-KGTAEVLVKIPN-PGNIKRNADGHF  242 (322)
T ss_dssp             EEEEEEETTTTEEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTT-TTCEEEEEECSS-EEEEEECTTSCE
T ss_pred             ceEEEEeCCCCEEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCc-CCccceEEeCCC-CCCeEECCCCCE
Confidence            668888876654322111112345678876655466665667899999986421 111222211122 667889998864


Q ss_pred             EEEEEeC----------CCcEEEEEcCCCccceeecCCC----CeEEEEeecCCCEEEEccCCceEEEeec
Q 036314          287 HLISASY----------DGKVMLWDLRTAWPLSVIDSHK----DKVLCADWWRGDSVISGGVDSKLCVSSG  343 (347)
Q Consensus       287 ~l~s~s~----------D~~i~lwd~~~~~~~~~~~~h~----~~v~~~~~~~~~~l~s~s~D~~v~vw~~  343 (347)
                       .++...          .+.|..+|.+ ++.+..+....    ..+.++.+..+..+++....+.|.+++-
T Consensus       243 -~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~~~~~~i~~~~~  311 (322)
T 2fp8_A          243 -WVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQEHDGLLYIGTLFHGSVGILVY  311 (322)
T ss_dssp             -EEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEEETTEEEEECSSCSEEEEEEC
T ss_pred             -EEEecCcccccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEEeCCEEEEeecCCCceEEEec
Confidence             443333          4668888875 56555554322    3456666666666667667777877653

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.06  E-value=0.0044  Score=55.39  Aligned_cols=216  Identities=7%  Similarity=-0.002  Sum_probs=121.9

Q ss_pred             CCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCC-CEEEEeeCCCcEEEEecCCCCCCCccceeeeccCC
Q 036314           88 KDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSG-NMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGN  166 (347)
Q Consensus        88 ~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~-~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~  166 (347)
                      ....|+..++...+.         ...+. .......++|++.+ .++++-...+.|..++.......    .       
T Consensus        94 ~~~~I~~i~~~~~~~---------~~~~~-~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~----~-------  152 (386)
T 3v65_B           94 NRIDIRQVLPHRSEY---------TLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVE----E-------  152 (386)
T ss_dssp             CBSCEEEECTTSCCC---------EEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEE----E-------
T ss_pred             cCccceeeccCCCcE---------EEEec-CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcE----E-------
Confidence            335688888765431         11122 23446789999754 55566667788888887542100    0       


Q ss_pred             CccccccccccccccccCCccceEEEEeC-CCCeE-EEEecCCcEEEEECCCCceeeeeee-C-eeeEEEEeeCCCCcEE
Q 036314          167 NQVEEPQLEGEAISTLVGHTQCVSSVVWP-QQETI-YSASWDHSVRTWDVEMGKDLSDIFC-G-KALNCIDIGGEGSALI  242 (347)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~l-~s~s~dg~v~vwd~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~l  242 (347)
                                    .+.........+++. .++.| ++-...+.|.+.++.... ...+.. . .....+++.+.++.++
T Consensus       153 --------------~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~-~~~l~~~~l~~P~giavdp~~g~ly  217 (386)
T 3v65_B          153 --------------VVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH-RKVLLWQSLEKPRAIALHPMEGTIY  217 (386)
T ss_dssp             --------------EECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCS-CEEEECSSCSCEEEEEEETTTTEEE
T ss_pred             --------------EEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCc-eEEeecCCCCCCcEEEEEcCCCeEE
Confidence                          000000111234442 34444 444556778888875433 222221 1 3457788887777776


Q ss_pred             EEecCC-CcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecCCCCeEEEE
Q 036314          243 AAGGSD-PILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKVLCA  321 (347)
Q Consensus       243 a~~~~d-~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h~~~v~~~  321 (347)
                      .+-... +.|..+++....   ..........+-..++++|++.++.++-+..+.|..+|++.......+........++
T Consensus       218 ~td~~~~~~I~r~~~dG~~---~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~gi  294 (386)
T 3v65_B          218 WTDWGNTPRIEASSMDGSG---RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAI  294 (386)
T ss_dssp             EEECSSSCEEEEEETTSCS---CEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEE
T ss_pred             EeccCCCCEEEEEeCCCCC---cEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEE
Confidence            665555 789888876321   1222233344578899998877767776778899999987543222233223445666


Q ss_pred             eecCCCEEEEccCCceEEEee
Q 036314          322 DWWRGDSVISGGVDSKLCVSS  342 (347)
Q Consensus       322 ~~~~~~~l~s~s~D~~v~vw~  342 (347)
                      ++..+..+++-...+.|...+
T Consensus       295 av~~~~ly~td~~~~~V~~~~  315 (386)
T 3v65_B          295 TVFEDSLYWTDWHTKSINSAN  315 (386)
T ss_dssp             EEETTEEEEEETTTTEEEEEE
T ss_pred             EEECCEEEEeeCCCCeEEEEE
Confidence            664455566655666665554

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.02  E-value=0.0015  Score=54.03  Aligned_cols=184  Identities=11%  Similarity=0.043  Sum_probs=107.5

Q ss_pred             CceeeccCCCCCEEEEEecCC--eEEEEcCC-CeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccc
Q 036314           25 DWVSAVDGSNPGFILTGCYDN--LGRVWKAG-GVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEE  101 (347)
Q Consensus        25 ~~v~~~~~~~~~~l~sg~~d~--~i~iw~~~-~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~  101 (347)
                      .+.-.+.|.++.+..|.|.+|  .|+..|+. ++.++...-... .....+...++   +.......++.+.+||.++.+
T Consensus        21 ~ftqGL~~~~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~-~fgeGi~~~~~---~ly~ltw~~~~v~v~D~~tl~   96 (243)
T 3mbr_X           21 AFTEGLFYLRGHLYESTGETGRSSVRKVDLETGRILQRAEVPPP-YFGAGIVAWRD---RLIQLTWRNHEGFVYDLATLT   96 (243)
T ss_dssp             CCEEEEEEETTEEEEEECCTTSCEEEEEETTTCCEEEEEECCTT-CCEEEEEEETT---EEEEEESSSSEEEEEETTTTE
T ss_pred             cccccEEEECCEEEEECCCCCCceEEEEECCCCCEEEEEeCCCC-cceeEEEEeCC---EEEEEEeeCCEEEEEECCcCc
Confidence            455567777766777888765  89999974 666555442222 23332233232   234445678899999987654


Q ss_pred             cccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCcccccccccccccc
Q 036314          102 LVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAIST  181 (347)
Q Consensus       102 ~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (347)
                      .         +.++..-..+ ..+  .++++.|+.+..+++|.++|.++........                    +. 
T Consensus        97 ~---------~~ti~~~~~G-wgl--t~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~--------------------V~-  143 (243)
T 3mbr_X           97 P---------RARFRYPGEG-WAL--TSDDSHLYMSDGTAVIRKLDPDTLQQVGSIK--------------------VT-  143 (243)
T ss_dssp             E---------EEEEECSSCC-CEE--EECSSCEEEECSSSEEEEECTTTCCEEEEEE--------------------CE-
T ss_pred             E---------EEEEeCCCCc-eEE--eeCCCEEEEECCCCeEEEEeCCCCeEEEEEE--------------------Ec-
Confidence            3         3333321222 233  3566666655568899999987643211100                    00 


Q ss_pred             ccC-CccceEEEEeCCCCeEEEEecCCcEEEEECCCCceeeeeeeC--------------eeeEEEEeeCCCCcEEEEe
Q 036314          182 LVG-HTQCVSSVVWPQQETIYSASWDHSVRTWDVEMGKDLSDIFCG--------------KALNCIDIGGEGSALIAAG  245 (347)
Q Consensus       182 ~~~-h~~~v~~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~la~~  245 (347)
                      ..+ .-..++.+.|.+++.++..-.+..|.+.|.++++.+..+...              ...+.+++.+....++++|
T Consensus       144 ~~g~~~~~lNeLe~~~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG  222 (243)
T 3mbr_X          144 AGGRPLDNLNELEWVNGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG  222 (243)
T ss_dssp             ETTEECCCEEEEEEETTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred             cCCcccccceeeEEeCCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence            000 002234555555554444445778999999999887666421              2457899988777788777

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.00  E-value=0.0032  Score=60.49  Aligned_cols=270  Identities=12%  Similarity=0.119  Sum_probs=127.5

Q ss_pred             CCCEEEEEecCC-----------eEEEEcCC-CeEE--EEee-ccCCceEEEEEeecCCCceEEEEEcc-CCCcEEEEec
Q 036314           34 NPGFILTGCYDN-----------LGRVWKAG-GVCT--HILE-GHCGAVSSVNIIKSDGLKYVTVATAS-KDQTLRLWKF   97 (347)
Q Consensus        34 ~~~~l~sg~~d~-----------~i~iw~~~-~~~~--~~l~-~h~~~V~~v~~~~~~~~~~~~l~s~s-~Dg~v~~wd~   97 (347)
                      ++.+++.||.+.           .+.+||+. +...  ..+. .+.....++++..++    ..++.|+ .+..+.+||.
T Consensus       197 ~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g----~lyv~GG~~~~~v~~yd~  272 (656)
T 1k3i_A          197 SGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNG----QIVVTGGNDAKKTSLYDS  272 (656)
T ss_dssp             TTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTS----CEEEECSSSTTCEEEEEG
T ss_pred             CCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCC----CEEEeCCCCCCceEEecC
Confidence            566888888653           57889874 3221  2222 222222344554422    3567777 4568999998


Q ss_pred             cccccccCccccceeeeeeccccceEEEEEeCCCCEEEEee-CC-----CcEEEEecCCCCCCCccceeeeccCCCcccc
Q 036314           98 DAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGS-WD-----CTISLWRTNDSDAAGNQVSIKKRKGNNQVEE  171 (347)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs-~D-----g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~  171 (347)
                      .+++-.       .+..+.. ...-.+++..+++++++.|+ .+     ..+.+||..+...       ........  .
T Consensus       273 ~t~~W~-------~~~~~~~-~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W-------~~~~~~~~--~  335 (656)
T 1k3i_A          273 SSDSWI-------PGPDMQV-ARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTW-------TSLPNAKV--N  335 (656)
T ss_dssp             GGTEEE-------ECCCCSS-CCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEE-------EEETTSCS--G
T ss_pred             cCCcee-------ECCCCCc-cccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcc-------eeCCCccc--c
Confidence            765321       1111111 11112345557899888888 44     5688898765321       00000000  0


Q ss_pred             ccccccccccccCCccceEEEEeCCCCeEEEEecCCcEEEEECCCCceeeeeeeCe----------eeEEEEeeCCCCcE
Q 036314          172 PQLEGEAISTLVGHTQCVSSVVWPQQETIYSASWDHSVRTWDVEMGKDLSDIFCGK----------ALNCIDIGGEGSAL  241 (347)
Q Consensus       172 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~  241 (347)
                      +....... ....+...+..+...++..+ .......+..||..+...........          .-.++.+...++.+
T Consensus       336 p~~~~~~~-~~~~~~~~iyv~Gg~~g~~~-~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i  413 (656)
T 1k3i_A          336 PMLTADKQ-GLYRSDNHAWLFGWKKGSVF-QAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKI  413 (656)
T ss_dssp             GGCCCCTT-GGGTTTCSCCEEECGGGCEE-ECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEE
T ss_pred             cccccccc-ceeecCCceEEEECCCCcEE-EecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeE
Confidence            00000000 00001112222222222222 22234467889988765443222111          11233333345678


Q ss_pred             EEEecCCC-----------cEEEEeCCCCCCCCCeEEec---CCCCC-eeEEEeCCCCCeEEEEEeCC-----------C
Q 036314          242 IAAGGSDP-----------ILRIWDPRKPGTSAPVFQFS---SHNSW-ISACKWHNKSWFHLISASYD-----------G  295 (347)
Q Consensus       242 la~~~~d~-----------~i~iwd~~~~~~~~~~~~~~---~h~~~-v~~v~~s~~~~~~l~s~s~D-----------~  295 (347)
                      ++.|+.++           .+.+||+....    ...+.   .+..+ -.++...|++. +++.|+.+           .
T Consensus       414 ~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~----W~~~~~~~mp~~R~~~~~~~l~~g~-i~v~GG~~~~~~~~~~~~~~  488 (656)
T 1k3i_A          414 LTFGGSPDYQDSDATTNAHIITLGEPGTSP----NTVFASNGLYFARTFHTSVVLPDGS-TFITGGQRRGIPFEDSTPVF  488 (656)
T ss_dssp             EEECCBSSSSSSBCCCCEEEEECCSTTSCC----EEEECTTCCSSCCBSCEEEECTTSC-EEEECCBSBCCTTCCCSBCC
T ss_pred             EEEeCCCCCCCCCcCCcceEEEcCCCCCCC----eeEEccCCCCCCcccCCeEECCCCC-EEEECCcccCcCcCCCCccc
Confidence            88887532           67788875321    12211   12222 23344556774 57777654           5


Q ss_pred             cEEEEEcCCCcc--ceee----cCCCCeEEEEeecCCCEEEEccC
Q 036314          296 KVMLWDLRTAWP--LSVI----DSHKDKVLCADWWRGDSVISGGV  334 (347)
Q Consensus       296 ~i~lwd~~~~~~--~~~~----~~h~~~v~~~~~~~~~~l~s~s~  334 (347)
                      .+.+||.++.+-  +..+    .+|.   .++...+|+.++.||.
T Consensus       489 ~v~~ydp~t~~W~~~~~~~~~R~~hs---~a~ll~dg~v~v~GG~  530 (656)
T 1k3i_A          489 TPEIYVPEQDTFYKQNPNSIVRVYHS---ISLLLPDGRVFNGGGG  530 (656)
T ss_dssp             CCEEEEGGGTEEEECCCCSSCCCTTE---EEEECTTSCEEEEECC
T ss_pred             ceEEEcCCCCceeecCCCCCcccccc---HhhcCCCcEEEecCCC
Confidence            689999876531  1111    1232   1222246777888774

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.00  E-value=0.015  Score=57.11  Aligned_cols=281  Identities=12%  Similarity=0.075  Sum_probs=149.0

Q ss_pred             CCceeeccCCCCCEEEEEecCCeEEEEcCCC-eEEEEeecc-------CCceEEEEEeecCCCceEEEEEccCCCcEEEE
Q 036314           24 DDWVSAVDGSNPGFILTGCYDNLGRVWKAGG-VCTHILEGH-------CGAVSSVNIIKSDGLKYVTVATASKDQTLRLW   95 (347)
Q Consensus        24 ~~~v~~~~~~~~~~l~sg~~d~~i~iw~~~~-~~~~~l~~h-------~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~w   95 (347)
                      ...|.++....++.|-.|..++-+..||... ........+       ...|.++...+++.     |..|+.+ -|.+|
T Consensus       214 ~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-----lWigt~~-Gl~~~  287 (795)
T 4a2l_A          214 TKQIQAILQQSPTRIWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNR-----LWIGTFN-DLNIY  287 (795)
T ss_dssp             CCCEEEEEEEETTEEEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSC-----EEEEESS-CEEEE
T ss_pred             CCeeEEEEEcCCCCEEEEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCC-----EEEEeCC-hhheE
Confidence            4567777654344444454443477788654 333322221       35578877655332     3344555 48888


Q ss_pred             eccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCcccccccc
Q 036314           96 KFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLE  175 (347)
Q Consensus        96 d~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (347)
                      +...+++.........  .-.-....|.++...++|.+.+ |+.++-|..|+......     ......           
T Consensus       288 ~~~~~~~~~~~~~~~~--~~~l~~~~i~~i~~D~~g~lWi-gt~~~Gl~~~~~~~~~~-----~~~~~~-----------  348 (795)
T 4a2l_A          288 HEGTDSFASYSSNPVE--NGSLSQRSVRSIFMDSQGGMWL-GTYFGGLNYYHPIRNRF-----KNIRNI-----------  348 (795)
T ss_dssp             ETTTTEEEEECCCTTS--TTSCSSSCEEEEEECTTSCEEE-EESSSCEEEECGGGGSS-----EEECCC-----------
T ss_pred             cCCCCeEEEEecCCCC--CCCCCCCcEEEEEEeCCcCEEE-EECCCCeEEeCCCcccc-----eEEcCC-----------
Confidence            8765542110000000  0001346799999888887554 77778888887543210     000000           


Q ss_pred             ccccccccCCccceEEEEeCCCCeEEEEecCCcEEEEECCCCceeeeee---------eCeeeEEEEeeCCCCcEEEEec
Q 036314          176 GEAISTLVGHTQCVSSVVWPQQETIYSASWDHSVRTWDVEMGKDLSDIF---------CGKALNCIDIGGEGSALIAAGG  246 (347)
Q Consensus       176 ~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~la~~~  246 (347)
                       .....+  ....|.++.......|..|+.++.|..||..++....-..         ....+.++...++ +.++-.|+
T Consensus       349 -~~~~~l--~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~-g~~lWigt  424 (795)
T 4a2l_A          349 -PYKNSL--SDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEK-KSLVYIGT  424 (795)
T ss_dssp             -TTSSSC--SCSSEEEEEECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETT-TTEEEEEE
T ss_pred             -CCCCCC--CCCeeEEEEECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCC-CCEEEEEe
Confidence             000001  2345788876555567778888889999987654322110         1234666666544 34244566


Q ss_pred             CCCcEEEEeCCCCCCCCCeEEec-----CCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeec------CCC
Q 036314          247 SDPILRIWDPRKPGTSAPVFQFS-----SHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVID------SHK  315 (347)
Q Consensus       247 ~d~~i~iwd~~~~~~~~~~~~~~-----~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~------~h~  315 (347)
                      .++-|..||.....    ...+.     .+...|.++...+++.  |..|+. +-+.+||.++++......      -+.
T Consensus       425 ~~~Gl~~~d~~~~~----~~~~~~~~~~l~~~~v~~i~~d~~g~--lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~  497 (795)
T 4a2l_A          425 HAGGLSILHRNSGQ----VENFNQRNSQLVNENVYAILPDGEGN--LWLGTL-SALVRFNPEQRSFTTIEKEKDGTPVVS  497 (795)
T ss_dssp             TTTEEEEEETTTCC----EEEECTTTSCCSCSCEEEEEECSSSC--EEEEES-SCEEEEETTTTEEEECCBCTTCCBCCC
T ss_pred             CcCceeEEeCCCCc----EEEeecCCCCcCCCeeEEEEECCCCC--EEEEec-CceeEEeCCCCeEEEccccccccccCC
Confidence            66779999976321    22222     1345788998888774  444555 458889987754322111      123


Q ss_pred             CeEEEEeec-CCCEEEEccCCceEEEee
Q 036314          316 DKVLCADWW-RGDSVISGGVDSKLCVSS  342 (347)
Q Consensus       316 ~~v~~~~~~-~~~~l~s~s~D~~v~vw~  342 (347)
                      ..|.++... +|...+ |+.+| |..++
T Consensus       498 ~~i~~i~~d~~g~lWi-gt~~G-l~~~~  523 (795)
T 4a2l_A          498 KQITTLFRDSHKRLWI-GGEEG-LSVFK  523 (795)
T ss_dssp             CCEEEEEECTTCCEEE-EESSC-EEEEE
T ss_pred             ceEEEEEECCCCCEEE-EeCCc-eEEEe
Confidence            567887764 454433 33343 44443

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=97.99  E-value=0.016  Score=57.00  Aligned_cols=268  Identities=9%  Similarity=0.025  Sum_probs=144.0

Q ss_pred             cCCceeeccCCCCCEEEEEecCCeEEEEcCCCeEEEEeec-------cCCceEEEEEeecCCCceEEEEEccCCCcEEEE
Q 036314           23 HDDWVSAVDGSNPGFILTGCYDNLGRVWKAGGVCTHILEG-------HCGAVSSVNIIKSDGLKYVTVATASKDQTLRLW   95 (347)
Q Consensus        23 h~~~v~~~~~~~~~~l~sg~~d~~i~iw~~~~~~~~~l~~-------h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~w   95 (347)
                      ....|.++.....+.|-.|..++-+..|+........+..       ....|.++...+++     .|-.|+.++-|..|
T Consensus       308 ~~~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g-----~lWiGt~~~Gl~~~  382 (795)
T 4a2l_A          308 SQRSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDK-----NLWIGTNDGGLNLY  382 (795)
T ss_dssp             SSSCEEEEEECTTSCEEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTS-----CEEEEESSSCEEEE
T ss_pred             CCCcEEEEEEeCCcCEEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCC-----CEEEEECCCCeEEE
Confidence            4467888876655556667776667888754221111211       23457787665433     25557777779999


Q ss_pred             eccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCcccccccc
Q 036314           96 KFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLE  175 (347)
Q Consensus        96 d~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (347)
                      +..+++............ ..-....|.++...++|+.|..|+.++-+.+||..+....    . ...            
T Consensus       383 ~~~~~~~~~~~~~~~~~~-~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~----~-~~~------------  444 (795)
T 4a2l_A          383 NPITQRFTSYTLQEDESA-RGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVE----N-FNQ------------  444 (795)
T ss_dssp             CTTTCCEEEECCC-------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEE----E-ECT------------
T ss_pred             cCCCCcEEEEecCCCCcc-cCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEE----E-eec------------
Confidence            876543211000000000 0012356899988888884566788788999987643210    0 000            


Q ss_pred             ccccccccCCccceEEEEeCCCCeEEEEecCCcEEEEECCCCceeeeee-------eCeeeEEEEeeCCCCcEEEEecCC
Q 036314          176 GEAISTLVGHTQCVSSVVWPQQETIYSASWDHSVRTWDVEMGKDLSDIF-------CGKALNCIDIGGEGSALIAAGGSD  248 (347)
Q Consensus       176 ~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~la~~~~d  248 (347)
                       .   .-..+...|.++.......|..++. +.+.+||..+++......       ....+.++...+++ .+.+ |+. 
T Consensus       445 -~---~~~l~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g-~lWi-gt~-  516 (795)
T 4a2l_A          445 -R---NSQLVNENVYAILPDGEGNLWLGTL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHK-RLWI-GGE-  516 (795)
T ss_dssp             -T---TSCCSCSCEEEEEECSSSCEEEEES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTC-CEEE-EES-
T ss_pred             -C---CCCcCCCeeEEEEECCCCCEEEEec-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCC-CEEE-EeC-
Confidence             0   0001234577777644444555555 458889987654322111       11346666665544 3433 333 


Q ss_pred             CcEEEEeCCCCCCCCCeEEec-------CCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeec---CC-CCe
Q 036314          249 PILRIWDPRKPGTSAPVFQFS-------SHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVID---SH-KDK  317 (347)
Q Consensus       249 ~~i~iwd~~~~~~~~~~~~~~-------~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~---~h-~~~  317 (347)
                      +-+..||.....    . .+.       .....|.++...+++.  |..|+.+ -+..||..+++. ..+.   +- .+.
T Consensus       517 ~Gl~~~~~~~~~----~-~~~~~~~~~~l~~~~i~~i~~d~~g~--lWigT~~-Gl~~~d~~~~~~-~~~~~~~gl~~~~  587 (795)
T 4a2l_A          517 EGLSVFKQEGLD----I-QKASILPVSNVTKLFTNCIYEASNGI--IWVGTRE-GFYCFNEKDKQI-KRYNTTNGLPNNV  587 (795)
T ss_dssp             SCEEEEEEETTE----E-EECCCSCSCGGGGSCEEEEEECTTSC--EEEEESS-CEEEEETTTTEE-EEECGGGTCSCSC
T ss_pred             CceEEEeCCCCe----E-EEecCCCCCCCCCCeeEEEEECCCCC--EEEEeCC-CceeECCCCCcE-EEeCCCCCCchhh
Confidence            458888865321    1 211       2345788998888875  4444444 577899876532 2221   11 245


Q ss_pred             EEEEeec-CCCEEE
Q 036314          318 VLCADWW-RGDSVI  330 (347)
Q Consensus       318 v~~~~~~-~~~~l~  330 (347)
                      |.++... .|...+
T Consensus       588 i~~i~~d~~g~lWi  601 (795)
T 4a2l_A          588 VYGILEDSFGRLWL  601 (795)
T ss_dssp             EEEEEECTTSCEEE
T ss_pred             eEEEEECCCCCEEE
Confidence            7777664 454433

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=97.98  E-value=0.0067  Score=52.51  Aligned_cols=232  Identities=9%  Similarity=0.065  Sum_probs=121.7

Q ss_pred             eeccCC-CCCEEEEEecCCeEEEEcCCCeEEEEeec--------------------cCCceEEEEEeecCCCceEEEEEc
Q 036314           28 SAVDGS-NPGFILTGCYDNLGRVWKAGGVCTHILEG--------------------HCGAVSSVNIIKSDGLKYVTVATA   86 (347)
Q Consensus        28 ~~~~~~-~~~~l~sg~~d~~i~iw~~~~~~~~~l~~--------------------h~~~V~~v~~~~~~~~~~~~l~s~   86 (347)
                      ..+++. ++.++.++..++.|..|+..+.....+..                    ....+..+++.+.++    .|..+
T Consensus        22 ~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g----~l~v~   97 (322)
T 2fp8_A           22 NSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNN----QLYIV   97 (322)
T ss_dssp             CCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTT----EEEEE
T ss_pred             eEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCC----cEEEE
Confidence            334554 45567888889999999876532332221                    113467888875222    24444


Q ss_pred             cCCCcEEEEeccccccccCccccceee-eeec-cccceEEEEEeC-CCCEEEEeeC-----------------CCcEEEE
Q 036314           87 SKDQTLRLWKFDAEELVNHPKKIRSFK-ILRG-HKASVHSIAAET-SGNMVCSGSW-----------------DCTISLW  146 (347)
Q Consensus        87 s~Dg~v~~wd~~~~~~~~~~~~~~~~~-~~~~-h~~~V~~v~~s~-~~~~l~sgs~-----------------Dg~I~iw  146 (347)
                      ...+.|..+|..+++..       .+. ...+ .......+++.+ +|++.++-..                 ++.|..|
T Consensus        98 d~~~~i~~~d~~~g~~~-------~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~  170 (322)
T 2fp8_A           98 DCYYHLSVVGSEGGHAT-------QLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKY  170 (322)
T ss_dssp             ETTTEEEEECTTCEECE-------EEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEE
T ss_pred             ECCCCEEEEeCCCCEEE-------EecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEE
Confidence            44455888887654311       111 0111 112467889999 8887776432                 2456666


Q ss_pred             ecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEeC-CCCeEEEE-ecCCcEEEEECCCCc--eeee
Q 036314          147 RTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWP-QQETIYSA-SWDHSVRTWDVEMGK--DLSD  222 (347)
Q Consensus       147 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~l~s~-s~dg~v~vwd~~~~~--~~~~  222 (347)
                      |..+...                          ..+...-.....+++. +++.|+.+ +.++.|.+|++....  ....
T Consensus       171 d~~~~~~--------------------------~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~  224 (322)
T 2fp8_A          171 DPSTKET--------------------------TLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEV  224 (322)
T ss_dssp             ETTTTEE--------------------------EEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEE
T ss_pred             eCCCCEE--------------------------EEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccce
Confidence            5432210                          0000000122456664 56655544 556889999987431  1111


Q ss_pred             ee-eCeeeEEEEeeCCCCcEEEEecC----------CCcEEEEeCCCCCCCCCeEEecCC----CCCeeEEEeCCCCCeE
Q 036314          223 IF-CGKALNCIDIGGEGSALIAAGGS----------DPILRIWDPRKPGTSAPVFQFSSH----NSWISACKWHNKSWFH  287 (347)
Q Consensus       223 ~~-~~~~~~~~~~~~~~~~~la~~~~----------d~~i~iwd~~~~~~~~~~~~~~~h----~~~v~~v~~s~~~~~~  287 (347)
                      +. ... ...+++.+++ ++.++...          .+.|..+|..  +.  .+..+...    ...+..+.+. ++ ++
T Consensus       225 ~~~~~g-P~gi~~d~~G-~l~va~~~~~~~~~~~~~~~~v~~~d~~--G~--~~~~~~~~~g~~~~~~~~~~~~-~g-~L  296 (322)
T 2fp8_A          225 LVKIPN-PGNIKRNADG-HFWVSSSEELDGNMHGRVDPKGIKFDEF--GN--ILEVIPLPPPFAGEHFEQIQEH-DG-LL  296 (322)
T ss_dssp             EEECSS-EEEEEECTTS-CEEEEEEEETTSSTTSCEEEEEEEECTT--SC--EEEEEECCTTTTTSCCCEEEEE-TT-EE
T ss_pred             EEeCCC-CCCeEECCCC-CEEEEecCcccccccCCCccEEEEECCC--CC--EEEEEECCCCCccccceEEEEe-CC-EE
Confidence            11 112 5567776655 45544433          4668888864  22  23333322    2346666663 33 55


Q ss_pred             EEEEeCCCcEEEEEcCC
Q 036314          288 LISASYDGKVMLWDLRT  304 (347)
Q Consensus       288 l~s~s~D~~i~lwd~~~  304 (347)
                      .++...++.|.++++..
T Consensus       297 ~v~~~~~~~i~~~~~~~  313 (322)
T 2fp8_A          297 YIGTLFHGSVGILVYDK  313 (322)
T ss_dssp             EEECSSCSEEEEEEC--
T ss_pred             EEeecCCCceEEEeccc
Confidence            66666778899998864

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=97.95  E-value=0.0094  Score=53.21  Aligned_cols=245  Identities=9%  Similarity=-0.039  Sum_probs=136.3

Q ss_pred             CCEEEEEecCCeEEEEcCCCeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeee
Q 036314           35 PGFILTGCYDNLGRVWKAGGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKI  114 (347)
Q Consensus        35 ~~~l~sg~~d~~i~iw~~~~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~  114 (347)
                      ..+|+.+. ...|+..++.+.....+.........++|.+..+   ..+.+-...+.|+.++++....         ...
T Consensus        87 ~~~l~~~~-~~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~---~ly~~D~~~~~I~r~~~~g~~~---------~~~  153 (386)
T 3v65_B           87 EPVLLFAN-RIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRE---LVFWSDVTLDRILRANLNGSNV---------EEV  153 (386)
T ss_dssp             CCEEEEEC-BSCEEEECTTSCCCEEEECSCSCEEEEEEETTTT---EEEEEETTTTEEEEEETTSCCE---------EEE
T ss_pred             cceeEeec-CccceeeccCCCcEEEEecCCCccEEEEEecCCC---eEEEEeCCCCcEEEEecCCCCc---------EEE
Confidence            34444443 3567777776543333333334578899986543   3456666778899998875421         111


Q ss_pred             eeccccceEEEEEeCCC-CEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEE
Q 036314          115 LRGHKASVHSIAAETSG-NMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVV  193 (347)
Q Consensus       115 ~~~h~~~V~~v~~s~~~-~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~  193 (347)
                      +.........+++++.+ .+.++-...+.|.+.++.....   ..                      .+...-.....++
T Consensus       154 ~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~---~~----------------------l~~~~l~~P~gia  208 (386)
T 3v65_B          154 VSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR---KV----------------------LLWQSLEKPRAIA  208 (386)
T ss_dssp             ECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSC---EE----------------------EECSSCSCEEEEE
T ss_pred             EeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCce---EE----------------------eecCCCCCCcEEE
Confidence            11122234568888754 5556666677888877643210   00                      0001112235566


Q ss_pred             e-CCCCeEEEEec-C-CcEEEEECCCCceeeeeee--CeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEe
Q 036314          194 W-PQQETIYSASW-D-HSVRTWDVEMGKDLSDIFC--GKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQF  268 (347)
Q Consensus       194 ~-~~~~~l~s~s~-d-g~v~vwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~  268 (347)
                      + |.+..|+.+.. . +.|...++... ....+..  -.....+++++.++.+..+-...+.|..+|+....   ....+
T Consensus       209 vdp~~g~ly~td~~~~~~I~r~~~dG~-~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~---~~~~~  284 (386)
T 3v65_B          209 LHPMEGTIYWTDWGNTPRIEASSMDGS-GRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSH---RKAVI  284 (386)
T ss_dssp             EETTTTEEEEEECSSSCEEEEEETTSC-SCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCS---CEEEE
T ss_pred             EEcCCCeEEEeccCCCCEEEEEeCCCC-CcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCe---eEEEE
Confidence            5 45565554443 3 56777776533 2222221  12357788887777777777778899999976321   12223


Q ss_pred             cCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecCCCCeEEEEee
Q 036314          269 SSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKVLCADW  323 (347)
Q Consensus       269 ~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h~~~v~~~~~  323 (347)
                      .........+++. . ..++++-...+.|..+|..+++...++........++.+
T Consensus       285 ~~~~~~P~giav~-~-~~ly~td~~~~~V~~~~~~~G~~~~~i~~~~~~p~gi~v  337 (386)
T 3v65_B          285 SQGLPHPFAITVF-E-DSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMDIHT  337 (386)
T ss_dssp             CSSCSSEEEEEEE-T-TEEEEEETTTTEEEEEETTTCCSCEEEECSCSCCCCEEE
T ss_pred             ECCCCCceEEEEE-C-CEEEEeeCCCCeEEEEECCCCcceEEEccCCCCCceEEE
Confidence            3334455667773 3 356777777889999996667666655433233344443

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=97.89  E-value=0.0094  Score=51.21  Aligned_cols=215  Identities=10%  Similarity=-0.003  Sum_probs=113.6

Q ss_pred             ceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCc--E
Q 036314           66 AVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCT--I  143 (347)
Q Consensus        66 ~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~--I  143 (347)
                      ....+++.+++    ..+++...++.|..||.+...          ...+. -......+++.++|+++++......  |
T Consensus        33 ~pegia~~~~g----~lyv~d~~~~~I~~~d~~g~~----------~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v   97 (306)
T 2p4o_A           33 FLENLASAPDG----TIFVTNHEVGEIVSITPDGNQ----------QIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPV   97 (306)
T ss_dssp             CEEEEEECTTS----CEEEEETTTTEEEEECTTCCE----------EEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEE
T ss_pred             CcceEEECCCC----CEEEEeCCCCeEEEECCCCce----------EEEEe-CCCCceeEEEcCCCcEEEEeccCCcceE
Confidence            35678887743    245666678889988875421          11111 1245788999999997666543333  5


Q ss_pred             EEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEeCCCCeE-EEEecCCcEEEEECCCCc-eee
Q 036314          144 SLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWPQQETI-YSASWDHSVRTWDVEMGK-DLS  221 (347)
Q Consensus       144 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l-~s~s~dg~v~vwd~~~~~-~~~  221 (347)
                      ..++..++..    ...                   ..+. .......++...+..+ ++-..++.|..+|...+. .+.
T Consensus        98 ~~~d~~~g~~----~~~-------------------~~~~-~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~  153 (306)
T 2p4o_A           98 VSLVKSDGTV----ETL-------------------LTLP-DAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIW  153 (306)
T ss_dssp             EEEECTTSCE----EEE-------------------EECT-TCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             EEEcCCCCeE----EEE-------------------EeCC-CccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEE
Confidence            5555443211    000                   0000 0011122332233444 333357788888876532 111


Q ss_pred             e--------eeeC--eeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEE
Q 036314          222 D--------IFCG--KALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISA  291 (347)
Q Consensus       222 ~--------~~~~--~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~  291 (347)
                      .        ....  ...+.+  ++++..++++-...+.|..||+...+.......+.. ......+++.++|. +.++.
T Consensus       154 ~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~-l~va~  229 (306)
T 2p4o_A          154 LEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGN-LYGAT  229 (306)
T ss_dssp             EECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCC-EEEEC
T ss_pred             EECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCC-EEEEe
Confidence            0        0000  122334  455556777777889999999864221111122211 12345678889884 45555


Q ss_pred             eCCCcEEEEEcCCCccc--eeecCCCCeEEEEeec
Q 036314          292 SYDGKVMLWDLRTAWPL--SVIDSHKDKVLCADWW  324 (347)
Q Consensus       292 s~D~~i~lwd~~~~~~~--~~~~~h~~~v~~~~~~  324 (347)
                      ...+.|.++|.+ ++..  ..+........+++|.
T Consensus       230 ~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~  263 (306)
T 2p4o_A          230 HIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFG  263 (306)
T ss_dssp             BTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEEC
T ss_pred             CCCCeEEEECCC-CCEEEEeecccccCCceEEEEe
Confidence            667899999986 5432  2233223467899996

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.81  E-value=0.0011  Score=63.81  Aligned_cols=211  Identities=11%  Similarity=0.042  Sum_probs=103.2

Q ss_pred             cEEEEeccccccccCccccceeeee-eccccceEEEEEeCCCCEEEEeeC-CCcEEEEecCCCCCCCccceeeeccCCCc
Q 036314           91 TLRLWKFDAEELVNHPKKIRSFKIL-RGHKASVHSIAAETSGNMVCSGSW-DCTISLWRTNDSDAAGNQVSIKKRKGNNQ  168 (347)
Q Consensus        91 ~v~~wd~~~~~~~~~~~~~~~~~~~-~~h~~~V~~v~~s~~~~~l~sgs~-Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~  168 (347)
                      .+.+||..+++.       +.+..+ ..+.....++++..++++++.|+. +..+.+||..+...       ..      
T Consensus       220 ~~~~yd~~t~~w-------~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W-------~~------  279 (656)
T 1k3i_A          220 LTSSWDPSTGIV-------SDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSW-------IP------  279 (656)
T ss_dssp             EEEEECTTTCCB-------CCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEE-------EE------
T ss_pred             EEEEEeCCCCcE-------EeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEEecCcCCce-------eE------
Confidence            578888876542       222222 123334445677889999999884 46799998764311       00      


Q ss_pred             cccccccccccccccCCccceEEEEeCCCCeEEEEe-cC-----CcEEEEECCCCceeeeeeeC--eeeE---EEEeeCC
Q 036314          169 VEEPQLEGEAISTLVGHTQCVSSVVWPQQETIYSAS-WD-----HSVRTWDVEMGKDLSDIFCG--KALN---CIDIGGE  237 (347)
Q Consensus       169 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s-~d-----g~v~vwd~~~~~~~~~~~~~--~~~~---~~~~~~~  237 (347)
                                +..+......-....+++++.++.|+ .+     ..+.+||..+..... +...  .+..   .......
T Consensus       280 ----------~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~-~~~~~~~p~~~~~~~~~~~~  348 (656)
T 1k3i_A          280 ----------GPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTS-LPNAKVNPMLTADKQGLYRS  348 (656)
T ss_dssp             ----------CCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEE-ETTSCSGGGCCCCTTGGGTT
T ss_pred             ----------CCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCccee-CCCccccccccccccceeec
Confidence                      00011111111223345778777777 44     468999998765332 1000  0000   0000012


Q ss_pred             CCcEEEEecCC---------CcEEEEeCCCCCCCCCeEEecCCC---------CCeeEEEeCCCCCeEEEEEeCCC----
Q 036314          238 GSALIAAGGSD---------PILRIWDPRKPGTSAPVFQFSSHN---------SWISACKWHNKSWFHLISASYDG----  295 (347)
Q Consensus       238 ~~~~la~~~~d---------~~i~iwd~~~~~~~~~~~~~~~h~---------~~v~~v~~s~~~~~~l~s~s~D~----  295 (347)
                      +..+++.|+.+         ..+..||+.....   ......+.         ..-.++.|...+..+++.|+.++    
T Consensus       349 ~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w---~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~  425 (656)
T 1k3i_A          349 DNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGD---VKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDS  425 (656)
T ss_dssp             TCSCCEEECGGGCEEECCSSSEEEEEECSTTCE---EEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSS
T ss_pred             CCceEEEECCCCcEEEecCccceeeeecCCcce---eecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCC
Confidence            22333444333         4567888764321   11111111         12244555433346677777542    


Q ss_pred             -------cEEEEEcCCCccceee--cCCCCeE--EEEeecCCCEEEEccCC
Q 036314          296 -------KVMLWDLRTAWPLSVI--DSHKDKV--LCADWWRGDSVISGGVD  335 (347)
Q Consensus       296 -------~i~lwd~~~~~~~~~~--~~h~~~v--~~~~~~~~~~l~s~s~D  335 (347)
                             .|.+||..+..-....  ..+....  .++...+|+.++.||.+
T Consensus       426 ~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~  476 (656)
T 1k3i_A          426 DATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQR  476 (656)
T ss_dssp             BCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBS
T ss_pred             CcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcc
Confidence                   6778888765322211  1122222  22333467788888865

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=97.81  E-value=0.0011  Score=54.85  Aligned_cols=147  Identities=16%  Similarity=0.079  Sum_probs=91.5

Q ss_pred             cceEEEEeCCCCeEEEEecCC--cEEEEECCCCceeeeeeeCeee--EEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCC
Q 036314          187 QCVSSVVWPQQETIYSASWDH--SVRTWDVEMGKDLSDIFCGKAL--NCIDIGGEGSALIAAGGSDPILRIWDPRKPGTS  262 (347)
Q Consensus       187 ~~v~~~~~~~~~~l~s~s~dg--~v~vwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~  262 (347)
                      .....+.|.++..+.|++.+|  .|+.+|+++++.+..+......  ..+++.  +..+....-.++.+.+||....   
T Consensus        21 ~ftqGL~~~~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~v~v~D~~tl---   95 (243)
T 3mbr_X           21 AFTEGLFYLRGHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHEGFVYDLATL---   95 (243)
T ss_dssp             CCEEEEEEETTEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTT---
T ss_pred             cccccEEEECCEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCEEEEEECCcC---
Confidence            446788886655556666654  8999999999988777544322  234443  3456666678899999998642   


Q ss_pred             CCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecC--CC---CeEEEEeecCCCEEEEccCCce
Q 036314          263 APVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDS--HK---DKVLCADWWRGDSVISGGVDSK  337 (347)
Q Consensus       263 ~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~--h~---~~v~~~~~~~~~~l~s~s~D~~  337 (347)
                      ..+.++...... ..+.  +++.. |..+..+++|.++|..+.+.+.++.-  +.   ..+..++|.+|..+|..-.+..
T Consensus        96 ~~~~ti~~~~~G-wglt--~dg~~-L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~~G~lyanvw~s~~  171 (243)
T 3mbr_X           96 TPRARFRYPGEG-WALT--SDDSH-LYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWVNGELLANVWLTSR  171 (243)
T ss_dssp             EEEEEEECSSCC-CEEE--ECSSC-EEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTTTE
T ss_pred             cEEEEEeCCCCc-eEEe--eCCCE-EEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEeCCEEEEEECCCCe
Confidence            234444322222 3344  45555 44445688999999999877766542  11   2345677777766655544555


Q ss_pred             EEEee
Q 036314          338 LCVSS  342 (347)
Q Consensus       338 v~vw~  342 (347)
                      |.+-+
T Consensus       172 I~vID  176 (243)
T 3mbr_X          172 IARID  176 (243)
T ss_dssp             EEEEC
T ss_pred             EEEEE
Confidence            55443

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=97.73  E-value=0.008  Score=57.84  Aligned_cols=61  Identities=11%  Similarity=0.188  Sum_probs=37.6

Q ss_pred             CCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecC
Q 036314          248 DPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDS  313 (347)
Q Consensus       248 d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~  313 (347)
                      ++.|.-||+...+   .+-+...+.. .....+...+. +++.++.|+.++.||.++++.+..+..
T Consensus       437 ~g~l~A~D~~tG~---~~W~~~~~~~-~~~~~~~t~gg-~vf~g~~dg~l~a~d~~tG~~l~~~~~  497 (668)
T 1kv9_A          437 SGALLAWDPVKQK---AAWKVPYPTH-WNGGTLSTAGN-LVFQGTAAGQMHAYSADKGEALWQFEA  497 (668)
T ss_dssp             EEEEEEEETTTTE---EEEEEEESSS-CCCCEEEETTT-EEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             cceEEEEeCCCCc---EEEEccCCCC-CcCceeEeCCC-EEEEECCcccchhhhhhcChhheEecC
Confidence            4788899986432   2222222221 11112222343 577889999999999999988877654

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.72  E-value=0.019  Score=49.83  Aligned_cols=273  Identities=12%  Similarity=-0.016  Sum_probs=132.0

Q ss_pred             CCceeeccCCCC-CEEEEEecCCeEEEEcCCCe-EEEE-ee--ccCCceEEEEEeecCCCceEEEEEccCCCcEEEEecc
Q 036314           24 DDWVSAVDGSNP-GFILTGCYDNLGRVWKAGGV-CTHI-LE--GHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFD   98 (347)
Q Consensus        24 ~~~v~~~~~~~~-~~l~sg~~d~~i~iw~~~~~-~~~~-l~--~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~   98 (347)
                      ...+.++.+.++ ..+| .+.++.|....-.|+ .... +.  .....+.+|.|.+  +   ..++ ++.++.|.. ..+
T Consensus        35 ~~~~~~v~~~~~~~~~~-~G~~g~i~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~--~---~~~~-~g~~g~i~~-S~D  106 (327)
T 2xbg_A           35 TATILDMSFIDRHHGWL-VGVNATLMETRDGGQTWEPRTLVLDHSDYRFNSVSFQG--N---EGWI-VGEPPIMLH-TTD  106 (327)
T ss_dssp             SSCEEEEEESSSSCEEE-EETTTEEEEESSTTSSCEECCCCCSCCCCEEEEEEEET--T---EEEE-EEETTEEEE-ESS
T ss_pred             CCcEEEEEECCCCcEEE-EcCCCeEEEeCCCCCCCeECCCCCCCCCccEEEEEecC--C---eEEE-EECCCeEEE-ECC
Confidence            346888887754 4555 567776644433332 2222 21  2234678888864  1   1233 455664433 222


Q ss_pred             ccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccc
Q 036314           99 AEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEA  178 (347)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (347)
                      .++      .++.......+...+..+.+.+++..++.+ .++.|  |...+....   .  ..                
T Consensus       107 gG~------tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v--~~S~DgG~t---W--~~----------------  156 (327)
T 2xbg_A          107 GGQ------SWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAI--YRTKDSGKN---W--QA----------------  156 (327)
T ss_dssp             TTS------SCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCE--EEESSTTSS---E--EE----------------
T ss_pred             CCC------CceECccccCCCCCeEEEEEECCCCEEEEe-CCccE--EEEcCCCCC---C--EE----------------
Confidence            221      122211111223446777777777666654 45544  332221110   0  00                


Q ss_pred             cccccCCccceEEEEeC-CCCeEEEEecCCcEE-EEECCCCceeeeee--eCeeeEEEEeeCCCCcEEEEecCCCcEEEE
Q 036314          179 ISTLVGHTQCVSSVVWP-QQETIYSASWDHSVR-TWDVEMGKDLSDIF--CGKALNCIDIGGEGSALIAAGGSDPILRIW  254 (347)
Q Consensus       179 ~~~~~~h~~~v~~~~~~-~~~~l~s~s~dg~v~-vwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~la~~~~d~~i~iw  254 (347)
                        ...++...+..+.+. ++..++. +.++.+. -+|- .+..-..+.  ....+..+.+.+++ .+++ .+.+|.+++.
T Consensus       157 --~~~~~~~~~~~~~~~~~~~~~~~-g~~G~~~~S~d~-gG~tW~~~~~~~~~~~~~~~~~~~g-~~~~-~~~~G~~~~s  230 (327)
T 2xbg_A          157 --LVQEAIGVMRNLNRSPSGEYVAV-SSRGSFYSTWEP-GQTAWEPHNRTTSRRLHNMGFTPDG-RLWM-IVNGGKIAFS  230 (327)
T ss_dssp             --EECSCCCCEEEEEECTTSCEEEE-ETTSSEEEEECT-TCSSCEEEECCSSSCEEEEEECTTS-CEEE-EETTTEEEEE
T ss_pred             --eecCCCcceEEEEEcCCCcEEEE-ECCCcEEEEeCC-CCCceeECCCCCCCccceeEECCCC-CEEE-EeCCceEEEe
Confidence              001122345667664 4444444 4455443 3442 122111111  22345566665544 4544 4457777776


Q ss_pred             eCCCCCCCCCeEEe-cCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeec---CCCCeEEEEeecCCCEEE
Q 036314          255 DPRKPGTSAPVFQF-SSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVID---SHKDKVLCADWWRGDSVI  330 (347)
Q Consensus       255 d~~~~~~~~~~~~~-~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~---~h~~~v~~~~~~~~~~l~  330 (347)
                      +.........+..- ..+...+.++.+.+++.  ++.++.++.+ .+..+.++.-..+.   .+...+.++.|.++..++
T Consensus       231 ~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~--~~~~g~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~~~  307 (327)
T 2xbg_A          231 DPDNSENWGELLSPLRRNSVGFLDLAYRTPNE--VWLAGGAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQGF  307 (327)
T ss_dssp             ETTEEEEECCCBCTTSSCCSCEEEEEESSSSC--EEEEESTTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTEEE
T ss_pred             cCCCCCeeEeccCCcccCCcceEEEEecCCCE--EEEEeCCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCceE
Confidence            32211111111000 01223578888987653  3444557777 45555565444433   234567888886666677


Q ss_pred             EccCCceEEEeec
Q 036314          331 SGGVDSKLCVSSG  343 (347)
Q Consensus       331 s~s~D~~v~vw~~  343 (347)
                      .++.+|+|.-+.+
T Consensus       308 ~~G~~G~i~~~~~  320 (327)
T 2xbg_A          308 ILGQKGILLRYVT  320 (327)
T ss_dssp             EECSTTEEEEECC
T ss_pred             EEcCCceEEEEcC
Confidence            7788998877665

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=97.72  E-value=0.021  Score=50.15  Aligned_cols=242  Identities=10%  Similarity=-0.032  Sum_probs=135.3

Q ss_pred             eeeccCCCCCEEEEEecCCeEEEEcCCCeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCc
Q 036314           27 VSAVDGSNPGFILTGCYDNLGRVWKAGGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHP  106 (347)
Q Consensus        27 v~~~~~~~~~~l~sg~~d~~i~iw~~~~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~  106 (347)
                      -++.+.....+|+-+. ...|+..++.+.....+.........++|.+..+   ....+-...+.|+.++++....    
T Consensus        36 ~~C~~~~~~~~ll~~~-~~~I~~i~~~g~~~~~~~~~~~~~~~l~~d~~~~---~ly~~D~~~~~I~r~~~~g~~~----  107 (349)
T 3v64_C           36 RSCKALGPEPVLLFAN-RIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRE---LVFWSDVTLDRILRANLNGSNV----  107 (349)
T ss_dssp             SCEEESSSCCEEEEEC-BSCEEEECTTSCCEEEEECSCSCEEEEEEETTTT---EEEEEETTTTEEEEEETTSCSC----
T ss_pred             CcccccccCceeEeec-ccceEEEeCCCCeeEEeecCCCceEEEEEecccc---EEEEEeccCCceEEEecCCCCc----
Confidence            3444433334444333 3457777776643333333334578899986543   3455666778899998875421    


Q ss_pred             cccceeeeeeccccceEEEEEeCC-CCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCC
Q 036314          107 KKIRSFKILRGHKASVHSIAAETS-GNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGH  185 (347)
Q Consensus       107 ~~~~~~~~~~~h~~~V~~v~~s~~-~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  185 (347)
                           ...+.........+++.+. +++.++-...+.|.+.++.....   ..                      .+...
T Consensus       108 -----~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~---~~----------------------l~~~~  157 (349)
T 3v64_C          108 -----EEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR---KV----------------------LLWQS  157 (349)
T ss_dssp             -----EEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC---EE----------------------EECTT
T ss_pred             -----eEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCce---EE----------------------EEeCC
Confidence                 1111112233467888875 45556666778888888653210   00                      00011


Q ss_pred             ccceEEEEe-CCCCeEEEEec-C-CcEEEEECCCCceeeeeee--CeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCC
Q 036314          186 TQCVSSVVW-PQQETIYSASW-D-HSVRTWDVEMGKDLSDIFC--GKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPG  260 (347)
Q Consensus       186 ~~~v~~~~~-~~~~~l~s~s~-d-g~v~vwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~  260 (347)
                      -.....+++ |.+..|+.+.. . +.|...++... ....+..  -...+.+++++.++.+..+-...+.|..+|+....
T Consensus       158 l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~-~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~  236 (349)
T 3v64_C          158 LEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS-GRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSH  236 (349)
T ss_dssp             CSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-SCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred             CCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCC-CcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCc
Confidence            122355665 44555554433 3 66777776533 2222211  12457788887777777777778899999986321


Q ss_pred             CCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeec
Q 036314          261 TSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVID  312 (347)
Q Consensus       261 ~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~  312 (347)
                         ....+.........+++. . ..+.++-...+.|...+..+++....+.
T Consensus       237 ---~~~~~~~~~~~P~giav~-~-~~ly~td~~~~~V~~~~~~~G~~~~~i~  283 (349)
T 3v64_C          237 ---RKAVISQGLPHPFAITVF-E-DSLYWTDWHTKSINSANKFTGKNQEIIR  283 (349)
T ss_dssp             ---CEEEECSSCSSEEEEEEE-T-TEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred             ---eEEEEeCCCCCceEEEEE-C-CEEEEecCCCCeEEEEEccCCCccEEec
Confidence               122233334455667773 3 3556666677888888865666555543

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=97.66  E-value=0.026  Score=49.55  Aligned_cols=213  Identities=8%  Similarity=-0.014  Sum_probs=119.6

Q ss_pred             CCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCC-CEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCC
Q 036314           89 DQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSG-NMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNN  167 (347)
Q Consensus        89 Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~-~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~  167 (347)
                      ...|+..+++..+.         ...+.+ ...+..++|++.. .++++-...+.|..+++......             
T Consensus        52 ~~~I~~i~~~g~~~---------~~~~~~-~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~-------------  108 (349)
T 3v64_C           52 RIDIRQVLPHRSEY---------TLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVE-------------  108 (349)
T ss_dssp             BSCEEEECTTSCCE---------EEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-------------
T ss_pred             ccceEEEeCCCCee---------EEeecC-CCceEEEEEeccccEEEEEeccCCceEEEecCCCCce-------------
Confidence            34577777754321         111222 3346789999655 45556667788888887542110             


Q ss_pred             ccccccccccccccccCCccceEEEEeC-CCCeE-EEEecCCcEEEEECCCCceeeeeee--CeeeEEEEeeCCCCcEEE
Q 036314          168 QVEEPQLEGEAISTLVGHTQCVSSVVWP-QQETI-YSASWDHSVRTWDVEMGKDLSDIFC--GKALNCIDIGGEGSALIA  243 (347)
Q Consensus       168 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~l-~s~s~dg~v~vwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~la  243 (347)
                                  ............+++. .++.| ++-...+.|.+.++.... ...+..  -.....+++.|.++.++.
T Consensus       109 ------------~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~-~~~l~~~~l~~P~~iavdp~~g~ly~  175 (349)
T 3v64_C          109 ------------EVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH-RKVLLWQSLEKPRAIALHPMEGTIYW  175 (349)
T ss_dssp             ------------EEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECTTCSCEEEEEEETTTTEEEE
T ss_pred             ------------EEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCc-eEEEEeCCCCCcceEEEecCcCeEEE
Confidence                        0000000112345542 34444 454556788888876433 222221  134577888877777776


Q ss_pred             EecCC-CcEEEEeCCCCCCCCCeEEe-cCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecCCCCeEEEE
Q 036314          244 AGGSD-PILRIWDPRKPGTSAPVFQF-SSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKVLCA  321 (347)
Q Consensus       244 ~~~~d-~~i~iwd~~~~~~~~~~~~~-~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h~~~v~~~  321 (347)
                      +-... +.|..+++....    ...+ .....+-..++++|++..+.++-+..+.|..+|++.......+........++
T Consensus       176 td~~~~~~I~r~~~dG~~----~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi  251 (349)
T 3v64_C          176 TDWGNTPRIEASSMDGSG----RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAI  251 (349)
T ss_dssp             EECSSSCEEEEEETTSCS----CEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEE
T ss_pred             eccCCCCEEEEEeCCCCC----cEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEE
Confidence            66555 889999876321    1222 22344568899998877767776777899999987533222232223345566


Q ss_pred             eecCCCEEEEccCCceEEEe
Q 036314          322 DWWRGDSVISGGVDSKLCVS  341 (347)
Q Consensus       322 ~~~~~~~l~s~s~D~~v~vw  341 (347)
                      ++..+..+++-...+.|...
T Consensus       252 av~~~~ly~td~~~~~V~~~  271 (349)
T 3v64_C          252 TVFEDSLYWTDWHTKSINSA  271 (349)
T ss_dssp             EEETTEEEEEETTTTEEEEE
T ss_pred             EEECCEEEEecCCCCeEEEE
Confidence            65445445554455555544

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=97.59  E-value=0.0096  Score=58.14  Aligned_cols=192  Identities=12%  Similarity=0.107  Sum_probs=101.8

Q ss_pred             ceEEEEEe-CCCCEEE-EeeCC----CcEEEEecCCC-CCCCccceeeeccCCCccccccccccccccccCCccceEEEE
Q 036314          121 SVHSIAAE-TSGNMVC-SGSWD----CTISLWRTNDS-DAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVV  193 (347)
Q Consensus       121 ~V~~v~~s-~~~~~l~-sgs~D----g~I~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~  193 (347)
                      .+...+|| |||++|+ +.+.+    .+|+++|+.++ .....                        .+.   .....+.
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~------------------------~~~---~~~~~~~  227 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD------------------------KVS---GTNGEIV  227 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC------------------------CEE---EECSCCE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc------------------------ccc---CceeeEE
Confidence            57788999 9999776 33333    35999998764 31000                        000   0122456


Q ss_pred             e-CCCCeEEEEecC-----CcEEEEECCCCcee-eeeee---CeeeEEEEeeCCCCcEEEEec--CCCcEEEEeCCCCCC
Q 036314          194 W-PQQETIYSASWD-----HSVRTWDVEMGKDL-SDIFC---GKALNCIDIGGEGSALIAAGG--SDPILRIWDPRKPGT  261 (347)
Q Consensus       194 ~-~~~~~l~s~s~d-----g~v~vwd~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~la~~~--~d~~i~iwd~~~~~~  261 (347)
                      | ++++.|+....|     ..|.++++.++... ..+..   ......+.+++++..++++..  ....|.++|+..+..
T Consensus       228 WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~  307 (751)
T 2xe4_A          228 WGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNA  307 (751)
T ss_dssp             ECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTT
T ss_pred             EecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCC
Confidence            6 577777766665     25777888765422 11211   122345677776654444432  345788888865311


Q ss_pred             CCC-eEEe-cCCCCCeeEEEeCCCCCeEEEEEeCC--C--cEEEEEcCCCcccee-ecCCCC--eEEEEeecCCCEEEEc
Q 036314          262 SAP-VFQF-SSHNSWISACKWHNKSWFHLISASYD--G--KVMLWDLRTAWPLSV-IDSHKD--KVLCADWWRGDSVISG  332 (347)
Q Consensus       262 ~~~-~~~~-~~h~~~v~~v~~s~~~~~~l~s~s~D--~--~i~lwd~~~~~~~~~-~~~h~~--~v~~~~~~~~~~l~s~  332 (347)
                       .. +..+ ....+...++.|+. +..+++....+  +  .|..+|+.++..... +..|..  .+..+.+..+..+++.
T Consensus       308 -~~~~~~l~~~~~~~~~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~~~~lv~~~  385 (751)
T 2xe4_A          308 -HNTLEIVRPREKGVRYDVQMHG-TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVRSNYLVVAG  385 (751)
T ss_dssp             -CCCEEESSCCCTTCCEEEEEET-TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEECSSEEEEEE
T ss_pred             -CceeEEeecCCCCceEEEeeee-CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEECCEEEEEE
Confidence             11 0233 23334445555543 44555555544  3  556667664322233 333443  3455666545456677


Q ss_pred             cCCceEEEe
Q 036314          333 GVDSKLCVS  341 (347)
Q Consensus       333 s~D~~v~vw  341 (347)
                      ..|+..+||
T Consensus       386 ~~~g~~~l~  394 (751)
T 2xe4_A          386 RRAGLTRIW  394 (751)
T ss_dssp             EETTEEEEE
T ss_pred             EeCCEEEEE
Confidence            777776655

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.59  E-value=0.031  Score=48.69  Aligned_cols=198  Identities=14%  Similarity=0.194  Sum_probs=109.8

Q ss_pred             CEEEEEecCCeEEEEcCCCeEEEEeeccCCceEEEEEeecC---CCce-EEEEEccC--CCcEEEEecc--ccccccCcc
Q 036314           36 GFILTGCYDNLGRVWKAGGVCTHILEGHCGAVSSVNIIKSD---GLKY-VTVATASK--DQTLRLWKFD--AEELVNHPK  107 (347)
Q Consensus        36 ~~l~sg~~d~~i~iw~~~~~~~~~l~~h~~~V~~v~~~~~~---~~~~-~~l~s~s~--Dg~v~~wd~~--~~~~~~~~~  107 (347)
                      .+++....++-+.++|+.|+.++.+..  +.++.+..-+..   +... ..+++.-.  +++|++|+++  .+++.....
T Consensus        41 s~ii~t~k~~gL~Vydl~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~~  118 (355)
T 3amr_A           41 SKLITTNKKSGLVVYSLDGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMTD  118 (355)
T ss_dssp             CEEEEEETTTEEEEEETTSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECSC
T ss_pred             cEEEEEcCCCCEEEEcCCCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeeccc
Confidence            355555566789999999998888764  567788776621   1010 12444444  6899999774  222111000


Q ss_pred             ccceeeeeeccccceEEEEE--eCC-CC-EEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCcccccccccccccccc
Q 036314          108 KIRSFKILRGHKASVHSIAA--ETS-GN-MVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLV  183 (347)
Q Consensus       108 ~~~~~~~~~~h~~~V~~v~~--s~~-~~-~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (347)
                      ...++   ..-...+..+++  ++. ++ +++....+|.+..|++......                  ....+.++++.
T Consensus       119 ~~~pv---~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g------------------~~~~~lVR~f~  177 (355)
T 3amr_A          119 PDHPI---ATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNG------------------YISGKKVRAFK  177 (355)
T ss_dssp             TTSCE---ECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTS------------------CEEEEEEEEEE
T ss_pred             cccCc---CCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCC------------------cccceEEEEec
Confidence            00000   000133455665  664 44 6778888899999987432110                  00122233333


Q ss_pred             CCccceEEEEe-CCCCeEEEEecCCcEEEEECC-----CCceeeeeeeC---eeeEEEEee--CCCC-cEEEEecCCCcE
Q 036314          184 GHTQCVSSVVW-PQQETIYSASWDHSVRTWDVE-----MGKDLSDIFCG---KALNCIDIG--GEGS-ALIAAGGSDPIL  251 (347)
Q Consensus       184 ~h~~~v~~~~~-~~~~~l~s~s~dg~v~vwd~~-----~~~~~~~~~~~---~~~~~~~~~--~~~~-~~la~~~~d~~i  251 (347)
                      ... .+..+.. +....|+.+-.+..|..+|.+     ++..+..+..+   ..+..+++.  +++. .+++++-.+++.
T Consensus       178 lgs-q~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~  256 (355)
T 3amr_A          178 MNS-QTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSY  256 (355)
T ss_dssp             CSS-CEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEE
T ss_pred             CCC-CcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEE
Confidence            322 2334443 556789999998777777754     22333322222   245666663  3333 466666567899


Q ss_pred             EEEeCC
Q 036314          252 RIWDPR  257 (347)
Q Consensus       252 ~iwd~~  257 (347)
                      .+||.+
T Consensus       257 ~Vydr~  262 (355)
T 3amr_A          257 AIYDRQ  262 (355)
T ss_dssp             EEEESS
T ss_pred             EEEECC
Confidence            999986

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.58  E-value=0.039  Score=49.42  Aligned_cols=247  Identities=9%  Similarity=-0.011  Sum_probs=138.4

Q ss_pred             EEEEEecCCeEEEEcCCCeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeeee
Q 036314           37 FILTGCYDNLGRVWKAGGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILR  116 (347)
Q Consensus        37 ~l~sg~~d~~i~iw~~~~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~  116 (347)
                      +|+.+. ...|+.-++.+.....+......+..|+|.+..+   ....+-...+.|+.++++.....     ......+.
T Consensus        85 ~ll~~~-~~~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~~~---~lywsD~~~~~I~~~~~~g~~~~-----~~~~~~~~  155 (400)
T 3p5b_L           85 YLFFTN-RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASN---RIYWSDLSQRMICSTQLDRAHGV-----SSYDTVIS  155 (400)
T ss_dssp             EEEEEE-TTEEEEECTTSCSCEEEECSCSCEEEEEEETTTT---EEEEEETTTTEEEEEEC-----------CCCEEEEC
T ss_pred             eeEEec-cceeEEEccCCcceeEeccccCcceEEeeeeccC---ceEEEecCCCeEEEEEcccCCCC-----CcceEEEe
Confidence            444443 3678877876543333344456678999987543   34556666788988887642100     00111222


Q ss_pred             ccccceEEEEEeC-CCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccc-cCCccceEEEEe
Q 036314          117 GHKASVHSIAAET-SGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTL-VGHTQCVSSVVW  194 (347)
Q Consensus       117 ~h~~~V~~v~~s~-~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~  194 (347)
                      ........+++.+ .+++.++-...+.|.+.++.....                          ..+ ...-.....+++
T Consensus       156 ~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~--------------------------~~l~~~~~~~P~~iav  209 (400)
T 3p5b_L          156 RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR--------------------------KTLFRENGSKPRAIVV  209 (400)
T ss_dssp             SSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSE--------------------------EEEEECSSCCEEEEEE
T ss_pred             CCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCce--------------------------EEEEeCCCCCcceEEE
Confidence            2334567889987 455666667778888887653210                          000 001122456665


Q ss_pred             -CCCCeEEEEec--CCcEEEEECCCCceeeeeeeC--eeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEec
Q 036314          195 -PQQETIYSASW--DHSVRTWDVEMGKDLSDIFCG--KALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFS  269 (347)
Q Consensus       195 -~~~~~l~s~s~--dg~v~vwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~  269 (347)
                       |.+..|+-+.+  .+.|...++... ....+...  .....+++++.++.+..+-...+.|..+|+.... ...+....
T Consensus       210 dp~~g~ly~td~~~~~~I~~~~~dG~-~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~-~~~~~~~~  287 (400)
T 3p5b_L          210 DPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-RKTILEDE  287 (400)
T ss_dssp             ETTTTEEEEEECSSSCCEEEEETTSC-SCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCC-CEEEEECS
T ss_pred             ecccCeEEEEeCCCCCEEEEEeCCCC-ccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCc-cEEEEeCC
Confidence             44566655443  357888887543 22223221  3457788887777777777778899999986422 11111111


Q ss_pred             CCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecCCCCeEEEEe
Q 036314          270 SHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKVLCAD  322 (347)
Q Consensus       270 ~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h~~~v~~~~  322 (347)
                      +....-..+++.  +..++++-...+.|..+|..+++.+.++........++.
T Consensus       288 ~~l~~P~gl~v~--~~~lywtd~~~~~V~~~~~~~G~~~~~i~~~~~~p~~i~  338 (400)
T 3p5b_L          288 KRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMV  338 (400)
T ss_dssp             STTSSEEEEEEE--TTEEEEEESSSCSEEEEESSSCCCCEEEECSCSCEEEEE
T ss_pred             CCCCCCEEEEEe--CCEEEEecCCCCeEEEEEcCCCCceEEEecCCCCCceEE
Confidence            122334556663  335677777888999999777776666544333444443

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=97.55  E-value=0.035  Score=52.31  Aligned_cols=61  Identities=13%  Similarity=-0.030  Sum_probs=36.5

Q ss_pred             CCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeec
Q 036314          247 SDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVID  312 (347)
Q Consensus       247 ~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~  312 (347)
                      .++.|..||+...+   .+.++... ..+....+...+. ++..++.|+.+..||.++++.+-++.
T Consensus       442 ~~g~l~a~D~~tG~---~~W~~~~~-~~~~~~~~~t~gg-~v~~g~~dg~l~a~D~~tG~~lw~~~  502 (571)
T 2ad6_A          442 EMGQIRAFDLTTGK---AKWTKWEK-FAAWGGTLYTKGG-LVWYATLDGYLKALDNKDGKELWNFK  502 (571)
T ss_dssp             CCEEEEEECTTTCC---EEEEEEES-SCCCSBCEEETTT-EEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             CCCeEEEEECCCCC---EEEEecCC-CCccceeEEECCC-EEEEEcCCCeEEEEECCCCCEEEEEe
Confidence            35788889886432   22232211 1111111111233 46678999999999999999887665

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=97.45  E-value=0.014  Score=57.01  Aligned_cols=112  Identities=10%  Similarity=0.041  Sum_probs=59.9

Q ss_pred             ceeeccCC-CC-CEEEEE-ecC----CeEEEEcCCCe-EEEEeecc-CCceEEEEEeecCCCceEEEEEccCC-----Cc
Q 036314           26 WVSAVDGS-NP-GFILTG-CYD----NLGRVWKAGGV-CTHILEGH-CGAVSSVNIIKSDGLKYVTVATASKD-----QT   91 (347)
Q Consensus        26 ~v~~~~~~-~~-~~l~sg-~~d----~~i~iw~~~~~-~~~~l~~h-~~~V~~v~~~~~~~~~~~~l~s~s~D-----g~   91 (347)
                      .+.+.++| ++ ++||-+ ..+    .+|+++|+.+. ..  +..+ ......+.|+|++.    .|+-.+.|     ..
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~--l~~~~~~~~~~~~WspDg~----~l~y~~~d~~~~~~~  248 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQT--IADKVSGTNGEIVWGPDHT----SLFYVTKDETLRENK  248 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCC--CCCCEEEECSCCEECSSTT----EEEEEEECTTCCEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEe--CCccccCceeeEEEecCCC----EEEEEEECCCCCCCE
Confidence            67778888 54 566633 222    35999997532 21  1111 11134678888553    24433443     25


Q ss_pred             EEEEeccccccccCccccceeeeee-ccccceEEEEEeCCCCEEEEeeC---CCcEEEEecCC
Q 036314           92 LRLWKFDAEELVNHPKKIRSFKILR-GHKASVHSIAAETSGNMVCSGSW---DCTISLWRTND  150 (347)
Q Consensus        92 v~~wd~~~~~~~~~~~~~~~~~~~~-~h~~~V~~v~~s~~~~~l~sgs~---Dg~I~iwd~~~  150 (347)
                      |.++++.+++.       +....+. .+......+.++|||++|+..+.   ...|.++|+.+
T Consensus       249 v~~~~lgt~~~-------~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~  304 (751)
T 2xe4_A          249 VWRHVMGKLQS-------EDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRK  304 (751)
T ss_dssp             EEEEETTSCGG-------GCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSS
T ss_pred             EEEEECCCCch-------hcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCC
Confidence            77777654321       1111222 22334567889999998775442   33466677654

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=97.44  E-value=0.1  Score=51.04  Aligned_cols=282  Identities=7%  Similarity=0.002  Sum_probs=145.6

Q ss_pred             CCceeeccCCCCCEEEEEecCCeEEEEcCCCeEEEEee---------------ccCCceEEEEEeecCCCceEEEEEccC
Q 036314           24 DDWVSAVDGSNPGFILTGCYDNLGRVWKAGGVCTHILE---------------GHCGAVSSVNIIKSDGLKYVTVATASK   88 (347)
Q Consensus        24 ~~~v~~~~~~~~~~l~sg~~d~~i~iw~~~~~~~~~l~---------------~h~~~V~~v~~~~~~~~~~~~l~s~s~   88 (347)
                      ...|.++....++.|-.|...+-+.+++........+.               -....|.++...+++.     |-.|+.
T Consensus       257 ~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-----lWigt~  331 (781)
T 3v9f_A          257 SSYIFSIKQLKDNKLWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-----IWIGTW  331 (781)
T ss_dssp             CCCEEEEEECTTSEEEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-----EEEEEB
T ss_pred             CceEEEEEECCCCCEEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-----EEEEec
Confidence            35677777655555666666344666776432221111               1234677776655332     455676


Q ss_pred             CCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCc
Q 036314           89 DQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQ  168 (347)
Q Consensus        89 Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~  168 (347)
                      ++-|..++..................-.-....|.++...++|.+. .|+.++-+..|+..+....        .     
T Consensus       332 ~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lW-igt~~~Gl~~~~~~~~~~~--------~-----  397 (781)
T 3v9f_A          332 GGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLW-IGTDGGGINVFENGKRVAI--------Y-----  397 (781)
T ss_dssp             SSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEE-EEEBSSCEEEEETTEEEEE--------C-----
T ss_pred             CCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEE-EEeCCCcEEEEECCCCeEE--------E-----
Confidence            7778888876443211000000000000123568899888877654 4666677888875431100        0     


Q ss_pred             cccccccccccccccCCccceEEEEeCCCCeEEEEecCCcEEEEECCCCceeeeee----eCeeeEEEEeeCCCCcEEEE
Q 036314          169 VEEPQLEGEAISTLVGHTQCVSSVVWPQQETIYSASWDHSVRTWDVEMGKDLSDIF----CGKALNCIDIGGEGSALIAA  244 (347)
Q Consensus       169 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~----~~~~~~~~~~~~~~~~~la~  244 (347)
                           +    ..........|.++.......|..|+.++.+..+|.++++. ..+.    ....+.++...+++ .+ -.
T Consensus       398 -----~----~~~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~-~~~~~~~~~~~~v~~i~~d~~g-~l-wi  465 (781)
T 3v9f_A          398 -----N----KENRELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKF-QIIELEKNELLDVRVFYEDKNK-KI-WI  465 (781)
T ss_dssp             -----C---------CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEE-EECCSTTTCCCCEEEEEECTTS-EE-EE
T ss_pred             -----c----cCCCCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcE-EEeccCCCCCCeEEEEEECCCC-CE-EE
Confidence                 0    00001123457777765445566677777799999876643 2222    12356666664433 33 34


Q ss_pred             ecCCCcEEEEeCCCCCCCCCeEEec---CCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecC----CCCe
Q 036314          245 GGSDPILRIWDPRKPGTSAPVFQFS---SHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDS----HKDK  317 (347)
Q Consensus       245 ~~~d~~i~iwd~~~~~~~~~~~~~~---~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~----h~~~  317 (347)
                      |+. +-|..||..... ........   .....|.++...+++.  |..|+.++-+..+|.++++ ...+..    ..+.
T Consensus       466 gt~-~Gl~~~~~~~~~-~~~~~~~~~~~~~~~~i~~i~~d~~g~--lWigt~~~Gl~~~~~~~~~-~~~~~~~~~l~~~~  540 (781)
T 3v9f_A          466 GTH-AGVFVIDLASKK-VIHHYDTSNSQLLENFVRSIAQDSEGR--FWIGTFGGGVGIYTPDMQL-VRKFNQYEGFCSNT  540 (781)
T ss_dssp             EET-TEEEEEESSSSS-CCEEECTTTSSCSCSCEEEEEECTTCC--EEEEESSSCEEEECTTCCE-EEEECTTTTCSCSC
T ss_pred             EEC-CceEEEeCCCCe-EEecccCcccccccceeEEEEEcCCCC--EEEEEcCCCEEEEeCCCCe-EEEccCCCCCCCCe
Confidence            444 568889876421 11111100   1135788998888874  5556664457778887653 222321    1346


Q ss_pred             EEEEeec-CCCEEEEccCCceEEEee
Q 036314          318 VLCADWW-RGDSVISGGVDSKLCVSS  342 (347)
Q Consensus       318 v~~~~~~-~~~~l~s~s~D~~v~vw~  342 (347)
                      |.++... +|...++ +.+|-|..++
T Consensus       541 i~~i~~d~~g~lWi~-T~~Glv~~~d  565 (781)
T 3v9f_A          541 INQIYRSSKGQMWLA-TGEGLVCFPS  565 (781)
T ss_dssp             EEEEEECTTSCEEEE-ETTEEEEESC
T ss_pred             eEEEEECCCCCEEEE-ECCCceEEEC
Confidence            7777764 4544333 3356545554

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.40  E-value=0.054  Score=46.85  Aligned_cols=218  Identities=9%  Similarity=0.019  Sum_probs=118.6

Q ss_pred             CCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCC-CCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCC
Q 036314           89 DQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETS-GNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNN  167 (347)
Q Consensus        89 Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~-~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~  167 (347)
                      ...|+..+++....       .....+. ....+..++|++. +.+.++-...+.|..++........ .          
T Consensus        12 ~~~I~~i~l~~~~~-------~~~~~~~-~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~-~----------   72 (318)
T 3sov_A           12 RRDLRLVDATNGKE-------NATIVVG-GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQ-N----------   72 (318)
T ss_dssp             EEEEEEEETTCTTS-------CCEEEEE-EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCC-E----------
T ss_pred             cCeEEEEECCCCce-------EEEEEec-CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceE-E----------
Confidence            45788888875421       0001111 2234568899875 4566676777889888875431100 0          


Q ss_pred             ccccccccccccccccCCccceEEEEeC-CCCe-EEEEecCCcEEEEECCCCceeeeee--eCeeeEEEEeeCCCCcEEE
Q 036314          168 QVEEPQLEGEAISTLVGHTQCVSSVVWP-QQET-IYSASWDHSVRTWDVEMGKDLSDIF--CGKALNCIDIGGEGSALIA  243 (347)
Q Consensus       168 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~-l~s~s~dg~v~vwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~la  243 (347)
                                   .+...-.....+++. .++. +.+-...+.|.++++.... ...+.  .......+++.+.++.++.
T Consensus        73 -------------~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~-~~~l~~~~~~~P~giavdp~~g~ly~  138 (318)
T 3sov_A           73 -------------VVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL-RKVLFWQELDQPRAIALDPSSGFMYW  138 (318)
T ss_dssp             -------------EEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECSSCSSEEEEEEEGGGTEEEE
T ss_pred             -------------EEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCc-EEEEEeCCCCCccEEEEeCCCCEEEE
Confidence                         000000122345542 3444 4454556789999876432 22222  1234567888776666655


Q ss_pred             Ee-cCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecCCCCeEEEEe
Q 036314          244 AG-GSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKVLCAD  322 (347)
Q Consensus       244 ~~-~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h~~~v~~~~  322 (347)
                      +- +..+.|..+++...  . ....+...-.+-..++++|++..+.++=+..+.|..+|++.........+......+++
T Consensus       139 td~~~~~~I~r~~~dG~--~-~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~gla  215 (318)
T 3sov_A          139 TDWGEVPKIERAGMDGS--S-RFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALT  215 (318)
T ss_dssp             EECSSSCEEEEEETTSC--S-CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEE
T ss_pred             EecCCCCEEEEEEcCCC--C-eEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEE
Confidence            54 33578888887632  1 11222233345678999998777667667788999999974332222222233445555


Q ss_pred             ecCCCEEEEccCCceEEEee
Q 036314          323 WWRGDSVISGGVDSKLCVSS  342 (347)
Q Consensus       323 ~~~~~~l~s~s~D~~v~vw~  342 (347)
                      ...+..+.+-...+.|...+
T Consensus       216 v~~~~lywtd~~~~~V~~~~  235 (318)
T 3sov_A          216 LFEDILYWTDWSTHSILACN  235 (318)
T ss_dssp             EETTEEEEEETTTTEEEEEE
T ss_pred             EeCCEEEEEecCCCeEEEEE
Confidence            54444455544455555443

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=97.37  E-value=0.058  Score=46.50  Aligned_cols=216  Identities=10%  Similarity=0.060  Sum_probs=121.0

Q ss_pred             CcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCC-CEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCc
Q 036314           90 QTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSG-NMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQ  168 (347)
Q Consensus        90 g~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~-~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~  168 (347)
                      ..|+..|+...+.         ...+. .......++|++.+ .++++-...+.|..+++..... +...          
T Consensus        10 ~~I~~i~~~~~~~---------~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~-~~~~----------   68 (316)
T 1ijq_A           10 HEVRKMTLDRSEY---------TSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHG-VSSY----------   68 (316)
T ss_dssp             SSEEEEETTSCCC---------EEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC---------C----------
T ss_pred             CeEEEEECCCcce---------Eehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCC-Cccc----------
Confidence            4688888876432         11122 23456789999865 4556666778999988754100 0000          


Q ss_pred             cccccccccccccccCCccceEEEEeC-CCCeE-EEEecCCcEEEEECCCCceeeeeee--CeeeEEEEeeCCCCcEEEE
Q 036314          169 VEEPQLEGEAISTLVGHTQCVSSVVWP-QQETI-YSASWDHSVRTWDVEMGKDLSDIFC--GKALNCIDIGGEGSALIAA  244 (347)
Q Consensus       169 ~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~l-~s~s~dg~v~vwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~la~  244 (347)
                                ...+...-.....+++. .++.| ++-...+.|.+.|+.... ...+..  ......+++.|.++.++.+
T Consensus        69 ----------~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~-~~~~~~~~~~~P~~iavdp~~g~ly~~  137 (316)
T 1ijq_A           69 ----------DTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK-RKTLFRENGSKPRAIVVDPVHGFMYWT  137 (316)
T ss_dssp             ----------EEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSS-EEEEEECTTCCEEEEEEETTTTEEEEE
T ss_pred             ----------EEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCc-eEEEEECCCCCcceEEeCCCCCEEEEE
Confidence                      00000011122455552 34444 444567889999976432 232322  2346778888777766666


Q ss_pred             ecCC-CcEEEEeCCCCCCCCCeEEe-cCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceee-cC--CCCeEE
Q 036314          245 GGSD-PILRIWDPRKPGTSAPVFQF-SSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVI-DS--HKDKVL  319 (347)
Q Consensus       245 ~~~d-~~i~iwd~~~~~~~~~~~~~-~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~-~~--h~~~v~  319 (347)
                      .... +.|..+++...  .  ...+ .....+-..++++|++..+.++-+..+.|..+|++.. ...++ ..  .-....
T Consensus       138 d~~~~~~I~~~~~dG~--~--~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~-~~~~~~~~~~~~~~P~  212 (316)
T 1ijq_A          138 DWGTPAKIKKGGLNGV--D--IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG-NRKTILEDEKRLAHPF  212 (316)
T ss_dssp             ECSSSCEEEEEETTSC--C--EEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEEECTTTTSSEE
T ss_pred             ccCCCCeEEEEcCCCC--C--eEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCC-ceEEEeecCCccCCcE
Confidence            5443 78888887531  1  2222 2234567889999887776677677889999999743 33333 21  123345


Q ss_pred             EEeecCCCEEEEccCCceEEEee
Q 036314          320 CADWWRGDSVISGGVDSKLCVSS  342 (347)
Q Consensus       320 ~~~~~~~~~l~s~s~D~~v~vw~  342 (347)
                      ++++..+..+++-...+.|...+
T Consensus       213 giav~~~~ly~~d~~~~~V~~~~  235 (316)
T 1ijq_A          213 SLAVFEDKVFWTDIINEAIFSAN  235 (316)
T ss_dssp             EEEEETTEEEEEETTTTEEEEEE
T ss_pred             EEEEECCEEEEEECCCCeEEEEe
Confidence            66664455555555566665543

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=97.34  E-value=0.11  Score=49.07  Aligned_cols=75  Identities=17%  Similarity=0.178  Sum_probs=42.1

Q ss_pred             CCcEEEEeCCCCCCCCCeEEecCCCCCe-eEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecCCCCeE-EEEee-c
Q 036314          248 DPILRIWDPRKPGTSAPVFQFSSHNSWI-SACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKV-LCADW-W  324 (347)
Q Consensus       248 d~~i~iwd~~~~~~~~~~~~~~~h~~~v-~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h~~~v-~~~~~-~  324 (347)
                      ++.|.-||+...+   .+-+...+.... ..+..  .+. +++.++.|+.++.||.++|+.+-++....+.. .-+.| .
T Consensus       465 ~G~l~A~D~~tG~---~~W~~~~~~~~~~g~~~t--agg-lvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~  538 (582)
T 1flg_A          465 VGSLRAMDPVSGK---VVWEHKEHLPLWAGVLAT--AGN-LVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQ  538 (582)
T ss_dssp             SEEEEEECTTTCC---EEEEEEESSCCCSCCEEE--TTT-EEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEE
T ss_pred             cceEEEEECCCCC---EEEEecCCCCCcccceEe--CCC-EEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEE
Confidence            5778888886432   122222111111 11222  233 57779999999999999999887765432211 11455 3


Q ss_pred             CCCE
Q 036314          325 RGDS  328 (347)
Q Consensus       325 ~~~~  328 (347)
                      +|++
T Consensus       539 ~G~q  542 (582)
T 1flg_A          539 DGEQ  542 (582)
T ss_dssp             TTEE
T ss_pred             CCEE
Confidence            6664

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=97.32  E-value=0.14  Score=50.03  Aligned_cols=271  Identities=13%  Similarity=0.084  Sum_probs=139.0

Q ss_pred             CceeeccCCCCCEEEEEecCCeEEEEcCCC-eEEEEeec-------cCCceEEEEEeecCCCceEEEEEccCCCcEEEEe
Q 036314           25 DWVSAVDGSNPGFILTGCYDNLGRVWKAGG-VCTHILEG-------HCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWK   96 (347)
Q Consensus        25 ~~v~~~~~~~~~~l~sg~~d~~i~iw~~~~-~~~~~l~~-------h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd   96 (347)
                      ..|.++.....+.|-.|..+ -+.+||... ........       ....|.++...+++     .|..|+..+-|.+++
T Consensus       211 ~~i~~i~~d~~g~lwigt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g-----~lWigt~~~Gl~~~~  284 (781)
T 3v9f_A          211 NDVRCIYKDTNGNIWIGTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDN-----KLWIATELNGIMILD  284 (781)
T ss_dssp             SSEEEEEECTTCCEEEEETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTS-----EEEEEESSSCEEEEE
T ss_pred             CceeEEEEcCCCCEEEEeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCC-----CEEEEeCCCCeEEEC
Confidence            55777765544434444445 477788643 33222111       13457777654422     245566645688888


Q ss_pred             ccccccccCcc-ccceeee----eeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCcccc
Q 036314           97 FDAEELVNHPK-KIRSFKI----LRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEE  171 (347)
Q Consensus        97 ~~~~~~~~~~~-~~~~~~~----~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~  171 (347)
                      ....++..... ....+..    -.-....|.++...++|.+. .|+.++-|..++.......     ......    . 
T Consensus       285 ~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~lW-igt~~~Gl~~~~~~~~~~~-----~~~~~~----~-  353 (781)
T 3v9f_A          285 LQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNNIW-IGTWGGGINFISNAPPTFH-----TWSYSP----T-  353 (781)
T ss_dssp             TTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCCEE-EEEBSSCEEEECSSCCSCE-----EEC---------
T ss_pred             CCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCCEE-EEecCCeEEEeCCCCCcce-----eeccCc----c-
Confidence            76654321100 0000000    01135678999888888644 4777788888876532110     000000    0 


Q ss_pred             ccccccccccccCCccceEEEEeCCCCeEEEEecCCcEEEEECCCCceeeeee-----eCeeeEEEEeeCCCCcEEEEec
Q 036314          172 PQLEGEAISTLVGHTQCVSSVVWPQQETIYSASWDHSVRTWDVEMGKDLSDIF-----CGKALNCIDIGGEGSALIAAGG  246 (347)
Q Consensus       172 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~la~~~  246 (347)
                          ......+  ....|.++.......|..|+.++.|..||..++... .+.     ....+.++...+.+ .+ -.|+
T Consensus       354 ----~~~~~~l--~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~-~~~~~~~~~~~~v~~i~~d~~g-~l-Wigt  424 (781)
T 3v9f_A          354 ----QMNESSL--SNKVVSSVCDDGQGKLWIGTDGGGINVFENGKRVAI-YNKENRELLSNSVLCSLKDSEG-NL-WFGT  424 (781)
T ss_dssp             ----CCCSSCC--SSSCEEEEEECTTSCEEEEEBSSCEEEEETTEEEEE-CC-----CCCSBEEEEEECTTS-CE-EEEE
T ss_pred             ----ccccCCC--CCcceEEEEEcCCCCEEEEeCCCcEEEEECCCCeEE-EccCCCCCCCcceEEEEECCCC-CE-EEEe
Confidence                0000001  224577777654456767777777999997654321 111     12346666664443 34 3456


Q ss_pred             CCCcEEEEeCCCCCCCCCeEEec---CCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecCC-----CCeE
Q 036314          247 SDPILRIWDPRKPGTSAPVFQFS---SHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSH-----KDKV  318 (347)
Q Consensus       247 ~d~~i~iwd~~~~~~~~~~~~~~---~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h-----~~~v  318 (347)
                      .++-+..+|.+..    ....+.   .....|.++...+++.  |..|+. +-+.++|.++++........     ...|
T Consensus       425 ~~~Gl~~~~~~~~----~~~~~~~~~~~~~~v~~i~~d~~g~--lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i  497 (781)
T 3v9f_A          425 YLGNISYYNTRLK----KFQIIELEKNELLDVRVFYEDKNKK--IWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFV  497 (781)
T ss_dssp             TTEEEEEECSSSC----EEEECCSTTTCCCCEEEEEECTTSE--EEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCE
T ss_pred             ccCCEEEEcCCCC----cEEEeccCCCCCCeEEEEEECCCCC--EEEEEC-CceEEEeCCCCeEEecccCccccccccee
Confidence            6667888886532    122221   2345788888887773  555555 55888998876433221111     3568


Q ss_pred             EEEeec-CCCE
Q 036314          319 LCADWW-RGDS  328 (347)
Q Consensus       319 ~~~~~~-~~~~  328 (347)
                      .++... +|..
T Consensus       498 ~~i~~d~~g~l  508 (781)
T 3v9f_A          498 RSIAQDSEGRF  508 (781)
T ss_dssp             EEEEECTTCCE
T ss_pred             EEEEEcCCCCE
Confidence            887764 3543

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=97.32  E-value=0.11  Score=48.80  Aligned_cols=51  Identities=18%  Similarity=0.076  Sum_probs=31.9

Q ss_pred             CCCcEEEEEcCCCccceeecCCCCeEEEEeec-CCCEEEEccCCceEEEeecc
Q 036314          293 YDGKVMLWDLRTAWPLSVIDSHKDKVLCADWW-RGDSVISGGVDSKLCVSSGV  344 (347)
Q Consensus       293 ~D~~i~lwd~~~~~~~~~~~~h~~~v~~~~~~-~~~~l~s~s~D~~v~vw~~~  344 (347)
                      .++.+..||+++++.+-++.. ...+.+.... .+..+..++.|+.|+.++..
T Consensus       442 ~~g~l~a~D~~tG~~~W~~~~-~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~  493 (571)
T 2ad6_A          442 EMGQIRAFDLTTGKAKWTKWE-KFAAWGGTLYTKGGLVWYATLDGYLKALDNK  493 (571)
T ss_dssp             CCEEEEEECTTTCCEEEEEEE-SSCCCSBCEEETTTEEEEECTTSEEEEEETT
T ss_pred             CCCeEEEEECCCCCEEEEecC-CCCccceeEEECCCEEEEEcCCCeEEEEECC
Confidence            357899999998876554432 1222222221 35666668889999988743

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.32  E-value=0.14  Score=49.98  Aligned_cols=228  Identities=10%  Similarity=-0.003  Sum_probs=127.1

Q ss_pred             CeEEEEcCCCeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeeeeccccceEE
Q 036314           45 NLGRVWKAGGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHS  124 (347)
Q Consensus        45 ~~i~iw~~~~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~  124 (347)
                      ..|+..++.+.....+......+.+|+|.+..+   .++.+-...+.|+.+++......     ......+.........
T Consensus       404 ~~Ir~i~l~~~~~~~l~~~~~~~~gl~~d~~~~---~lY~sD~~~~~I~~~~l~g~~~~-----~~~~~vi~~~l~~P~G  475 (791)
T 3m0c_C          404 HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASN---RIYWSDLSQRMICSTQLDRAHGV-----SSYDTVISRDIQAPDG  475 (791)
T ss_dssp             SSEEEECTTSCCCEEEECSCSSEEEEEEETTTT---EEEEEETTTTEEEEEEC-------------CEEEECSSCSCCCE
T ss_pred             cceeEeeccCCcceeeecCCCceEEEeecccCC---eeEEeeccceeEEEEeccCCCCC-----cceeEEEecCCCCcce
Confidence            456666665433233333445677888876443   34556666788988887642110     0011122223344667


Q ss_pred             EEEeCCC-CEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCcccccccccccccccc-CCccceEEEEe-CCCCeEE
Q 036314          125 IAAETSG-NMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLV-GHTQCVSSVVW-PQQETIY  201 (347)
Q Consensus       125 v~~s~~~-~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~-~~~~~l~  201 (347)
                      |++.+.+ ++.++-...+.|.+.++....                          ..++. ..-.....|++ +....|+
T Consensus       476 LAvD~~~~~LY~tD~~~~~I~v~~ldG~~--------------------------~~~l~~~~l~~P~gIaVDp~~g~LY  529 (791)
T 3m0c_C          476 LAVDWIHSNIYWTDSVLGTVSVADTKGVK--------------------------RKTLFRENGSKPRAIVVDPVHGFMY  529 (791)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTSSS--------------------------EEEEEECTTCCEEEEEEETTTTEEE
T ss_pred             eeeeecCCcEEEEecCCCeEEEEeCCCCe--------------------------EEEEEeCCCCCcceEEEecCCCCEE
Confidence            8998776 455666777889888875321                          00110 11122456666 4555665


Q ss_pred             EEecC--CcEEEEECCCCceeeeeeeC--eeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecC--CCCCe
Q 036314          202 SASWD--HSVRTWDVEMGKDLSDIFCG--KALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSS--HNSWI  275 (347)
Q Consensus       202 s~s~d--g~v~vwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~--h~~~v  275 (347)
                      -+.+.  +.|.+.++.. .....+...  .....+++.+.++.++.+-...+.|..+|+.....   ...+..  .....
T Consensus       530 wtD~g~~~~I~~~~~dG-~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~---~~v~~~~~~l~~P  605 (791)
T 3m0c_C          530 WTDWGTPAKIKKGGLNG-VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR---KTILEDEKRLAHP  605 (791)
T ss_dssp             EEECSSSCEEEEEETTS-CCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC---EEEEECTTTTSSE
T ss_pred             EecCCCCCeEEEEecCC-CceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCce---EEEecCCCccCCC
Confidence            55432  5677777753 333333222  34677888877777777767778999999864221   222222  12234


Q ss_pred             eEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeec
Q 036314          276 SACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVID  312 (347)
Q Consensus       276 ~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~  312 (347)
                      ..+++..  .++.++-...+.|...|..+++.+.++.
T Consensus       606 ~glav~~--~~lYwtD~~~~~I~~~dk~tG~~~~~l~  640 (791)
T 3m0c_C          606 FSLAVFE--DKVFWTDIINEAIFSANRLTGSDVNLLA  640 (791)
T ss_dssp             EEEEEET--TEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred             CEEEEeC--CEEEEEECCCCEEEEEeCCCCcceEEee
Confidence            4566533  3556666677888888877776555543

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=97.25  E-value=0.08  Score=45.62  Aligned_cols=231  Identities=10%  Similarity=0.013  Sum_probs=126.3

Q ss_pred             CeEEEEcCCCeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeeeeccccceEE
Q 036314           45 NLGRVWKAGGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHS  124 (347)
Q Consensus        45 ~~i~iw~~~~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~  124 (347)
                      ..|+..++.+.....+........+++|.+..+   ....+-...+.|..+++......   .  .....+...-.....
T Consensus        10 ~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~---~ly~~D~~~~~I~~~~~~g~~~~---~--~~~~~~~~~~~~p~g   81 (316)
T 1ijq_A           10 HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASN---RIYWSDLSQRMICSTQLDRAHGV---S--SYDTVISRDIQAPDG   81 (316)
T ss_dssp             SSEEEEETTSCCCEEEECSCSSEEEEEEETTTT---EEEEEETTTTEEEEEEC-------------CEEEECSSCSCCCE
T ss_pred             CeEEEEECCCcceEehhcCCCceEEEEEEeCCC---EEEEEECCCCcEEEEECCCCCCC---c--ccEEEEeCCCCCcCE
Confidence            357777765432222222344567888887543   34566667789999988651000   0  001112222234567


Q ss_pred             EEEeCCC-CEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEe-CCCCeEEE
Q 036314          125 IAAETSG-NMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW-PQQETIYS  202 (347)
Q Consensus       125 v~~s~~~-~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~l~s  202 (347)
                      +++++.+ ++.++-...+.|.+.+......    ..                   +  +...-.....++. |.+..|+.
T Consensus        82 lavd~~~~~ly~~d~~~~~I~~~~~~g~~~----~~-------------------~--~~~~~~~P~~iavdp~~g~ly~  136 (316)
T 1ijq_A           82 LAVDWIHSNIYWTDSVLGTVSVADTKGVKR----KT-------------------L--FRENGSKPRAIVVDPVHGFMYW  136 (316)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTSSSE----EE-------------------E--EECTTCCEEEEEEETTTTEEEE
T ss_pred             EEEeecCCeEEEEECCCCEEEEEeCCCCce----EE-------------------E--EECCCCCcceEEeCCCCCEEEE
Confidence            8888654 5556667788899988653210    00                   0  0001122355665 45666655


Q ss_pred             EecC--CcEEEEECCCCceeeeeee--CeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEE
Q 036314          203 ASWD--HSVRTWDVEMGKDLSDIFC--GKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISAC  278 (347)
Q Consensus       203 ~s~d--g~v~vwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v  278 (347)
                      +...  +.|...++. +.....+..  -.....+++++.++.+..+-...+.|..+|+... ....+............+
T Consensus       137 ~d~~~~~~I~~~~~d-G~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~-~~~~~~~~~~~~~~P~gi  214 (316)
T 1ijq_A          137 TDWGTPAKIKKGGLN-GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG-NRKTILEDEKRLAHPFSL  214 (316)
T ss_dssp             EECSSSCEEEEEETT-SCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEEECTTTTSSEEEE
T ss_pred             EccCCCCeEEEEcCC-CCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCC-ceEEEeecCCccCCcEEE
Confidence            5443  577777764 333332321  1245678888777777777777889999998632 111111111122344566


Q ss_pred             EeCCCCCeEEEEEeCCCcEEEEEcCCCccceeec
Q 036314          279 KWHNKSWFHLISASYDGKVMLWDLRTAWPLSVID  312 (347)
Q Consensus       279 ~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~  312 (347)
                      ++..  .++.++-...+.|..+|..+++.+..+.
T Consensus       215 av~~--~~ly~~d~~~~~V~~~~~~~g~~~~~i~  246 (316)
T 1ijq_A          215 AVFE--DKVFWTDIINEAIFSANRLTGSDVNLLA  246 (316)
T ss_dssp             EEET--TEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred             EEEC--CEEEEEECCCCeEEEEeCCCCcceEEEe
Confidence            6642  3567777778899999987776555543

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=97.22  E-value=0.083  Score=45.17  Aligned_cols=236  Identities=11%  Similarity=0.030  Sum_probs=119.1

Q ss_pred             CceeeccCC-CCCEEEEEecCCeEEEEcCCCeEEEEeeccCCceEEEEEeecCCCceEEEEEcc-CCC-cEEEEeccccc
Q 036314           25 DWVSAVDGS-NPGFILTGCYDNLGRVWKAGGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATAS-KDQ-TLRLWKFDAEE  101 (347)
Q Consensus        25 ~~v~~~~~~-~~~~l~sg~~d~~i~iw~~~~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s-~Dg-~v~~wd~~~~~  101 (347)
                      .....++++ ++.++++-..++.|..|+..+.....+. -.+....+++.+++.    .+++.. .++ .|..++..+++
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~~~~~~-~~~~p~gia~~~dG~----l~vad~~~~~~~v~~~d~~~g~  106 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQIHAT-VEGKVSGLAFTSNGD----LVATGWNADSIPVVSLVKSDGT  106 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEEE-CSSEEEEEEECTTSC----EEEEEECTTSCEEEEEECTTSC
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCCceEEEEe-CCCCceeEEEcCCCc----EEEEeccCCcceEEEEcCCCCe
Confidence            345556665 4556666667889999998775544333 234578888877442    334333 332 35555655543


Q ss_pred             cccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCcccccccccccccc
Q 036314          102 LVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAIST  181 (347)
Q Consensus       102 ~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (347)
                      +.       .+..+. .......++..+++..+++-..++.|.++|......  . .......         .  .. ..
T Consensus       107 ~~-------~~~~~~-~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~--~-v~~~~~~---------~--~~-~~  163 (306)
T 2p4o_A          107 VE-------TLLTLP-DAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSG--S-IWLEHPM---------L--AR-SN  163 (306)
T ss_dssp             EE-------EEEECT-TCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEE--E-EEEECGG---------G--SC-SS
T ss_pred             EE-------EEEeCC-CccccCcccccCCCcEEEEECCCCeEEEEeCCCCcE--e-EEEECCc---------c--cc-cc
Confidence            21       111111 112233444455555555555678887777543200  0 0000000         0  00 00


Q ss_pred             ccCCccceEEEEeCCCCeEE-EEecCCcEEEEECCC-Cce--eeeeeeCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCC
Q 036314          182 LVGHTQCVSSVVWPQQETIY-SASWDHSVRTWDVEM-GKD--LSDIFCGKALNCIDIGGEGSALIAAGGSDPILRIWDPR  257 (347)
Q Consensus       182 ~~~h~~~v~~~~~~~~~~l~-s~s~dg~v~vwd~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~  257 (347)
                      ..+.-...+.+ .++++.|+ +-...+.|.++|+.. +..  ...+........+++.+++ ++.++....+.|.++|..
T Consensus       164 ~~~~~~~pngi-s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG-~l~va~~~~~~V~~~~~~  241 (306)
T 2p4o_A          164 SESVFPAANGL-KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEG-NLYGATHIYNSVVRIAPD  241 (306)
T ss_dssp             TTCCSCSEEEE-EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTC-CEEEECBTTCCEEEECTT
T ss_pred             ccCCCCcCCCc-CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEeccCCCCCeEECCCC-CEEEEeCCCCeEEEECCC
Confidence            00001122334 35666554 445667899999864 321  1111111223456666554 566776667899999864


Q ss_pred             CCCCCCCeEEecCCCCCeeEEEeC---CCCCeEEEEEe
Q 036314          258 KPGTSAPVFQFSSHNSWISACKWH---NKSWFHLISAS  292 (347)
Q Consensus       258 ~~~~~~~~~~~~~h~~~v~~v~~s---~~~~~~l~s~s  292 (347)
                        +....+..+........+++|.   |++.+++++.+
T Consensus       242 --G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~  277 (306)
T 2p4o_A          242 --RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTN  277 (306)
T ss_dssp             --CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEEC
T ss_pred             --CCEEEEeecccccCCceEEEEecccCCCCEEEEECC
Confidence              2211121233334568899998   78766555544

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.11  E-value=0.11  Score=44.79  Aligned_cols=224  Identities=12%  Similarity=0.036  Sum_probs=127.1

Q ss_pred             CeEEEEcCCCe--EEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeeeeccccce
Q 036314           45 NLGRVWKAGGV--CTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASV  122 (347)
Q Consensus        45 ~~i~iw~~~~~--~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V  122 (347)
                      ..|+..++.+.  ....+........+++|.+..+   ....+-...+.|..++++.+..        ....+...-...
T Consensus        13 ~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~---~lyw~D~~~~~I~r~~~~g~~~--------~~~~~~~~l~~p   81 (318)
T 3sov_A           13 RDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHG---LIYWSDVSEEAIKRTEFNKTES--------VQNVVVSGLLSP   81 (318)
T ss_dssp             EEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGT---EEEEEETTTTEEEEEETTSSSC--------CCEEEEECCSCC
T ss_pred             CeEEEEECCCCceEEEEEecCCCccEEEEEEeCCC---EEEEEECCCCcEEEEEccCCCc--------eEEEEcCCCCCc
Confidence            56788877542  1122222223467888887433   3456667778899998865421        001111222345


Q ss_pred             EEEEEeCC-CCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccc-cCCccceEEEEe-CCCCe
Q 036314          123 HSIAAETS-GNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTL-VGHTQCVSSVVW-PQQET  199 (347)
Q Consensus       123 ~~v~~s~~-~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~-~~~~~  199 (347)
                      ..+++.+. +.+.++-...+.|.++++.....                          ..+ ...-..-..+++ +.+..
T Consensus        82 ~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~--------------------------~~l~~~~~~~P~giavdp~~g~  135 (318)
T 3sov_A           82 DGLACDWLGEKLYWTDSETNRIEVSNLDGSLR--------------------------KVLFWQELDQPRAIALDPSSGF  135 (318)
T ss_dssp             CEEEEETTTTEEEEEETTTTEEEEEETTSCSC--------------------------EEEECSSCSSEEEEEEEGGGTE
T ss_pred             cEEEEEcCCCeEEEEECCCCEEEEEECCCCcE--------------------------EEEEeCCCCCccEEEEeCCCCE
Confidence            67888864 55666666778898888753210                          000 011122345555 34455


Q ss_pred             EEEEec--CCcEEEEECCCCceeeeeeeC--eeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCe
Q 036314          200 IYSASW--DHSVRTWDVEMGKDLSDIFCG--KALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWI  275 (347)
Q Consensus       200 l~s~s~--dg~v~vwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v  275 (347)
                      |+-+.+  .+.|...++.. .....+...  ...+.+++++.++.+..+-...+.|..+|+.....   ...+.+....-
T Consensus       136 ly~td~~~~~~I~r~~~dG-~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~---~~~~~~~~~~P  211 (318)
T 3sov_A          136 MYWTDWGEVPKIERAGMDG-SSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNR---QAVVKGSLPHP  211 (318)
T ss_dssp             EEEEECSSSCEEEEEETTS-CSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC---EEEECSCCSCE
T ss_pred             EEEEecCCCCEEEEEEcCC-CCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCce---EEEecCCCCCc
Confidence            555443  46677777643 222222211  23577888877777777777789999999863211   11222233445


Q ss_pred             eEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceee
Q 036314          276 SACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVI  311 (347)
Q Consensus       276 ~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~  311 (347)
                      ..+++..  ..++++-...+.|..+|..+++....+
T Consensus       212 ~glav~~--~~lywtd~~~~~V~~~~~~~G~~~~~i  245 (318)
T 3sov_A          212 FALTLFE--DILYWTDWSTHSILACNKYTGEGLREI  245 (318)
T ss_dssp             EEEEEET--TEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred             eEEEEeC--CEEEEEecCCCeEEEEECCCCCceEEE
Confidence            5666643  356777777889999998777655544

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.09  E-value=0.15  Score=45.63  Aligned_cols=221  Identities=10%  Similarity=0.013  Sum_probs=121.9

Q ss_pred             CCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCC-EEEEeeCCCcEEEEecCCCCCCCccceeeeccCC
Q 036314           88 KDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGN-MVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGN  166 (347)
Q Consensus        88 ~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~-~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~  166 (347)
                      ....|+..+++..+.          ..+......+..++|++.+. +.++-...+.|+.+++.........         
T Consensus        90 ~~~~I~~i~l~~~~~----------~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~---------  150 (400)
T 3p5b_L           90 NRHEVRKMTLDRSEY----------TSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSY---------  150 (400)
T ss_dssp             ETTEEEEECTTSCSC----------EEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCC---------
T ss_pred             ccceeEEEccCCcce----------eEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcc---------
Confidence            346788888765421          11223345678899998554 5556666788888877532100000         


Q ss_pred             CccccccccccccccccCCccceEEEEeC-CCCeE-EEEecCCcEEEEECCCCceeeeee-eCeeeEEEEeeCCCCcEEE
Q 036314          167 NQVEEPQLEGEAISTLVGHTQCVSSVVWP-QQETI-YSASWDHSVRTWDVEMGKDLSDIF-CGKALNCIDIGGEGSALIA  243 (347)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~l-~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~la  243 (347)
                                  ...+.........+++. .++.| .+-...+.|.+.++........+. .......+++.+.++.++.
T Consensus       151 ------------~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~  218 (400)
T 3p5b_L          151 ------------DTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYW  218 (400)
T ss_dssp             ------------EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEE
T ss_pred             ------------eEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEE
Confidence                        00011111234556653 24444 444556788888876543222222 1234677888877666666


Q ss_pred             Eec-CCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecC--CCCeEEE
Q 036314          244 AGG-SDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDS--HKDKVLC  320 (347)
Q Consensus       244 ~~~-~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~--h~~~v~~  320 (347)
                      +-. ..+.|...++....   ....+.....+-..++++|++..+.++=+....|..+|++..........  .-....+
T Consensus       219 td~~~~~~I~~~~~dG~~---~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~g  295 (400)
T 3p5b_L          219 TDWGTPAKIKKGGLNGVD---IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFS  295 (400)
T ss_dssp             EECSSSCCEEEEETTSCS---CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEE
T ss_pred             EeCCCCCEEEEEeCCCCc---cEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEE
Confidence            543 34788888876321   12222333456788999988877666666778999999975432222221  2234455


Q ss_pred             EeecCCCEEEEccCCceEEEee
Q 036314          321 ADWWRGDSVISGGVDSKLCVSS  342 (347)
Q Consensus       321 ~~~~~~~~l~s~s~D~~v~vw~  342 (347)
                      ++...+..+++-...+.|...+
T Consensus       296 l~v~~~~lywtd~~~~~V~~~~  317 (400)
T 3p5b_L          296 LAVFEDKVFWTDIINEAIFSAN  317 (400)
T ss_dssp             EEEETTEEEEEESSSCSEEEEE
T ss_pred             EEEeCCEEEEecCCCCeEEEEE
Confidence            6654444555655556665543

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.00  E-value=0.24  Score=46.76  Aligned_cols=110  Identities=11%  Similarity=0.019  Sum_probs=58.8

Q ss_pred             CCEEEEEec-CCeEEEEcC--CCeEEEEeeccCCc-----------eEEEEEeecCCCceEEEEEccCCCcEEEEecccc
Q 036314           35 PGFILTGCY-DNLGRVWKA--GGVCTHILEGHCGA-----------VSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAE  100 (347)
Q Consensus        35 ~~~l~sg~~-d~~i~iw~~--~~~~~~~l~~h~~~-----------V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~  100 (347)
                      ++.|..++. ++.+.-+|.  .|+.+..+......           ...+++.|.++.....|+.++.|+.|..+|..++
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG  141 (599)
T 1w6s_A           62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG  141 (599)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence            455666666 888888987  57776655432210           1123443322211123677888999999998887


Q ss_pred             ccccCccccceeeeeeccc--cceEEE-EEeCCCCEEEEee------CCCcEEEEecCCCCC
Q 036314          101 ELVNHPKKIRSFKILRGHK--ASVHSI-AAETSGNMVCSGS------WDCTISLWRTNDSDA  153 (347)
Q Consensus       101 ~~~~~~~~~~~~~~~~~h~--~~V~~v-~~s~~~~~l~sgs------~Dg~I~iwd~~~~~~  153 (347)
                      +.+=.     .  .+..+.  ..+.+- .+ .++. ++.++      .++.|+-+|..+++.
T Consensus       142 ~~~W~-----~--~~~~~~~~~~~~ssP~v-~~g~-V~vg~~g~e~g~~g~v~A~D~~TG~~  194 (599)
T 1w6s_A          142 ETVWK-----V--ENSDIKVGSTLTIAPYV-VKDK-VIIGSSGAELGVRGYLTAYDVKTGEQ  194 (599)
T ss_dssp             CEEEE-----E--ECCCGGGTCBCCSCCEE-ETTE-EEECCBCGGGTCCCEEEEEETTTCCE
T ss_pred             CEEEe-----e--cCCCCCccceeecCCEE-ECCE-EEEEecccccCCCCeEEEEECCCCcE
Confidence            64310     0  011110  011110 11 1344 44444      489999999987653

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.00  E-value=0.013  Score=56.71  Aligned_cols=219  Identities=10%  Similarity=0.021  Sum_probs=110.1

Q ss_pred             CCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEE-EEeeCCCcEEEEecCCCCCCCccceeeeccCC
Q 036314           88 KDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMV-CSGSWDCTISLWRTNDSDAAGNQVSIKKRKGN  166 (347)
Q Consensus        88 ~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l-~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~  166 (347)
                      ..+.|+..++...+..         ..+.. ...+..++|++.+..| ++-...+.|+.+++.........         
T Consensus       384 ~~~~I~~id~~~~~~~---------~~~~~-~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~---------  444 (699)
T 1n7d_A          384 NRHEVRKMTLDRSEYT---------SLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSY---------  444 (699)
T ss_dssp             CTTC-CEECTTSCCEE---------CCSCC-CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCC---------
T ss_pred             CccceEEEeCCCCcce---------eeecc-CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcce---------
Confidence            3456777777654321         11111 2345678898866555 45456678888887541000000         


Q ss_pred             CccccccccccccccccCCccceEEEEeC-CCCe-EEEEecCCcEEEEECCCCceeeeeee--CeeeEEEEeeCCCCcEE
Q 036314          167 NQVEEPQLEGEAISTLVGHTQCVSSVVWP-QQET-IYSASWDHSVRTWDVEMGKDLSDIFC--GKALNCIDIGGEGSALI  242 (347)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~-l~s~s~dg~v~vwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l  242 (347)
                                  ...+...-.....+++. .++. +++-...+.|.+.++.... ...+..  ......+++.+.++.++
T Consensus       445 ------------~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~-~~~l~~~~~~~P~giavDp~~g~ly  511 (699)
T 1n7d_A          445 ------------DTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK-RKTLFREQGSKPRAIVVDPVHGFMY  511 (699)
T ss_dssp             ------------CCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCC-EEEECCCSSCCCCCEECCSSSSCCE
T ss_pred             ------------EEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCc-eEEEEeCCCCCcceEEEccCCCcEE
Confidence                        00000000112234542 3333 4444556788888876443 222221  12345677776666655


Q ss_pred             EEecCC-CcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecC---CCCeE
Q 036314          243 AAGGSD-PILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDS---HKDKV  318 (347)
Q Consensus       243 a~~~~d-~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~---h~~~v  318 (347)
                      .+-... +.|..+++....  .. ..+.....+-..++|+|++.++.++-+..+.|.++|++... ..++..   .-...
T Consensus       512 ~td~~~~~~I~~~~~dG~~--~~-~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~-~~~~~~~~~~~~~P  587 (699)
T 1n7d_A          512 WTDWGTPAKIKKGGLNGVD--IY-SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-RKTILEDEKRLAHP  587 (699)
T ss_dssp             ECCCSSSCCEEBCCSSSCC--CC-EESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSC-CEEECCCSSSCSSC
T ss_pred             EcccCCCCeEEEEeCCCCC--ee-EEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCc-eEEEEecCCcCCCc
Confidence            554333 678888765321  11 11122234556799999877767777778899999997432 222211   11122


Q ss_pred             EEEeecCCCEEEEccCCceEEEee
Q 036314          319 LCADWWRGDSVISGGVDSKLCVSS  342 (347)
Q Consensus       319 ~~~~~~~~~~l~s~s~D~~v~vw~  342 (347)
                      .++++..+..+++....+.|...+
T Consensus       588 ~glavd~~~lywtd~~~~~V~~~d  611 (699)
T 1n7d_A          588 FSLAVFEDKVFWTDIINEAIFSAN  611 (699)
T ss_dssp             CCCEEETTEEEEECSTTTCEEEEE
T ss_pred             eEeEEECCEEEEEeCCCCeEEEEE
Confidence            333333334455555556665554

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=96.92  E-value=0.0068  Score=58.64  Aligned_cols=231  Identities=9%  Similarity=0.007  Sum_probs=116.6

Q ss_pred             CeEEEEcCCCeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeeeeccccceEE
Q 036314           45 NLGRVWKAGGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHS  124 (347)
Q Consensus        45 ~~i~iw~~~~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~  124 (347)
                      +.|+..++.+.....+......+..|+|.+..+   .+..+-...+.|+.+++......   .  .....+.........
T Consensus       386 ~~I~~id~~~~~~~~~~~~~~~p~gla~d~~~~---~Ly~sD~~~~~I~~~~~~g~~~~---~--~~~~~i~~~~~~P~g  457 (699)
T 1n7d_A          386 HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASN---RIYWSDLSQRMICSTQLDRAHGV---S--SYDTVISRDIQAPDG  457 (699)
T ss_dssp             TC-CEECTTSCCEECCSCCCTTCCCCEEETTTT---EEEECCTTTTSBEEEESCCCCC----C--CCCCBCCSCC--CCC
T ss_pred             cceEEEeCCCCcceeeeccCcceEEEccccccC---eEEEEecCCCeEEEEecCCCCCC---c--ceEEEEeCCCCCcce
Confidence            466666765433322222234456788876443   34455566788999988641000   0  000111111122345


Q ss_pred             EEEeCC-CCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEe-CCCCeEEE
Q 036314          125 IAAETS-GNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW-PQQETIYS  202 (347)
Q Consensus       125 v~~s~~-~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~l~s  202 (347)
                      +++.+. ++++++-...+.|.+.++.....    ..+                     +.........+++ +.+..|+.
T Consensus       458 lavD~~~g~LY~tD~~~~~I~v~d~dg~~~----~~l---------------------~~~~~~~P~giavDp~~g~ly~  512 (699)
T 1n7d_A          458 LAVDWIHSNIYWTDSVLGTVSVADTKGVKR----KTL---------------------FREQGSKPRAIVVDPVHGFMYW  512 (699)
T ss_dssp             EECCCSSSBCEECCTTTSCEEEEBSSSCCE----EEE---------------------CCCSSCCCCCEECCSSSSCCEE
T ss_pred             EEEEeeCCcEEEEeccCCeEEEEecCCCce----EEE---------------------EeCCCCCcceEEEccCCCcEEE
Confidence            788754 45556666678898888653210    000                     0000011234454 33444444


Q ss_pred             EecC--CcEEEEECCCCceeeeeee--CeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEE
Q 036314          203 ASWD--HSVRTWDVEMGKDLSDIFC--GKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISAC  278 (347)
Q Consensus       203 ~s~d--g~v~vwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v  278 (347)
                      +.+.  +.|.+.++... ....+..  -...+.+++.+.++.++.+-...+.|..+|+.... ...+............+
T Consensus       513 td~~~~~~I~~~~~dG~-~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~-~~~~~~~~~~~~~P~gl  590 (699)
T 1n7d_A          513 TDWGTPAKIKKGGLNGV-DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSL  590 (699)
T ss_dssp             CCCSSSCCEEBCCSSSC-CCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSC-CEEECCCSSSCSSCCCC
T ss_pred             cccCCCCeEEEEeCCCC-CeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCc-eEEEEecCCcCCCceEe
Confidence            3322  56777665432 2222211  12345688887777787777778899999986321 11111111111223344


Q ss_pred             EeCCCCCeEEEEEeCCCcEEEEEcCCCccceeec
Q 036314          279 KWHNKSWFHLISASYDGKVMLWDLRTAWPLSVID  312 (347)
Q Consensus       279 ~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~  312 (347)
                      ++..+  +++++....+.|..+|..+++.+.++.
T Consensus       591 avd~~--~lywtd~~~~~V~~~d~~~G~~~~~i~  622 (699)
T 1n7d_A          591 AVFED--KVFWTDIINEAIFSANRLTGSDVNLLA  622 (699)
T ss_dssp             EEETT--EEEEECSTTTCEEEEETTTEEEEECCC
T ss_pred             EEECC--EEEEEeCCCCeEEEEEccCCCceEEee
Confidence            55433  567777778899999987776555543

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=96.92  E-value=0.043  Score=49.66  Aligned_cols=154  Identities=10%  Similarity=0.101  Sum_probs=88.5

Q ss_pred             eEEEEEeC-CCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEe-CCCCe
Q 036314          122 VHSIAAET-SGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW-PQQET  199 (347)
Q Consensus       122 V~~v~~s~-~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~  199 (347)
                      ...++++| ++..|+.+...+.|+.+|.....                          +..+.........+++ ++++.
T Consensus       139 P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~--------------------------v~~~~~~~~~P~~ia~d~~G~~  192 (430)
T 3tc9_A          139 AVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEY--------------------------VSTVYSGLSKVRTICWTHEADS  192 (430)
T ss_dssp             CCEEEEETTEEEEEEEEEBTEEEEEEETTTTE--------------------------EEEEECCCSCEEEEEECTTSSE
T ss_pred             CCEEEECCCCCCeEEEEeCCCcEEEEECCCCE--------------------------EEEEecCCCCcceEEEeCCCCE
Confidence            46788997 34555555554788888875421                          1111112233566777 45665


Q ss_pred             EEEEecC-C----cEEEEECCCCcee--eeeeeCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCC
Q 036314          200 IYSASWD-H----SVRTWDVEMGKDL--SDIFCGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHN  272 (347)
Q Consensus       200 l~s~s~d-g----~v~vwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~  272 (347)
                      |+.+... +    .+.+.+ ..+...  ..+........+++++.++.++++-..++.|..+|+.... ...+... +..
T Consensus       193 lyvad~~~~~~~~~v~~~~-~~g~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~-~~~~~~~-~~~  269 (430)
T 3tc9_A          193 MIITNDQNNNDRPNNYILT-RESGFKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQE-TTPLFTI-QDS  269 (430)
T ss_dssp             EEEEECCSCTTSEEEEEEE-GGGTSCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTE-EEEEEEC-SSS
T ss_pred             EEEEeCCCCcccceEEEEe-CCCceeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCc-EEEEEEc-CCC
Confidence            6655542 2    233333 333222  2222223345677777566777777778899999976321 1012222 222


Q ss_pred             CCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCC
Q 036314          273 SWISACKWHNKSWFHLISASYDGKVMLWDLRT  304 (347)
Q Consensus       273 ~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~  304 (347)
                      .+-..++|+|++.+++++-...+.|..++.+.
T Consensus       270 ~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~  301 (430)
T 3tc9_A          270 GWEFHIQFHPSGNYAYIVVVNQHYILRSDYDW  301 (430)
T ss_dssp             SCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred             CcceeEEEcCCCCEEEEEECCCCEEEEEeCCc
Confidence            45678999999986677777888999988763

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=96.75  E-value=0.26  Score=43.18  Aligned_cols=108  Identities=13%  Similarity=-0.043  Sum_probs=55.8

Q ss_pred             ceeeccCCCCCEEEEEecCCeEEEEcCCCeEE--EEe---eccCCceEEEEEeecCCCceEEEEEccCC-----CcEEEE
Q 036314           26 WVSAVDGSNPGFILTGCYDNLGRVWKAGGVCT--HIL---EGHCGAVSSVNIIKSDGLKYVTVATASKD-----QTLRLW   95 (347)
Q Consensus        26 ~v~~~~~~~~~~l~sg~~d~~i~iw~~~~~~~--~~l---~~h~~~V~~v~~~~~~~~~~~~l~s~s~D-----g~v~~w   95 (347)
                      .-+.+++.+++.|..+..++.|++++ .+...  ..+   ..-......|+++|+-...+...++-+..     +.|..|
T Consensus        32 ~P~~ia~~pdG~l~V~e~~g~I~~i~-~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~  110 (352)
T 2ism_A           32 VPWALAFLPDGGMLIAERPGRIRLFR-EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRL  110 (352)
T ss_dssp             CEEEEEECTTSCEEEEETTTEEEEEE-TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEE
T ss_pred             CceEEEEcCCCeEEEEeCCCeEEEEE-CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEE
Confidence            34567776444344445679999988 44322  111   11234578899988521112233333332     567778


Q ss_pred             eccccccccCccccce-eeeee---ccccceEEEEEeCCCCEEEEee
Q 036314           96 KFDAEELVNHPKKIRS-FKILR---GHKASVHSIAAETSGNMVCSGS  138 (347)
Q Consensus        96 d~~~~~~~~~~~~~~~-~~~~~---~h~~~V~~v~~s~~~~~l~sgs  138 (347)
                      +...+++.    ..+. +..+.   +.......++|.|||.+.++-+
T Consensus       111 ~~~~~~~~----~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G  153 (352)
T 2ism_A          111 RHLGERGV----LDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG  153 (352)
T ss_dssp             EECSSCEE----EEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred             EeCCCCcC----ceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence            77643211    1111 11122   1111235789999998777644

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=96.74  E-value=0.49  Score=46.28  Aligned_cols=217  Identities=9%  Similarity=0.018  Sum_probs=116.8

Q ss_pred             CCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCC-CCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCC
Q 036314           89 DQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETS-GNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNN  167 (347)
Q Consensus        89 Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~-~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~  167 (347)
                      ...|+..++...+.          ..+......+..++|++. +.++++-...+.|+.+++.........          
T Consensus       403 ~~~Ir~i~l~~~~~----------~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~----------  462 (791)
T 3m0c_C          403 RHEVRKMTLDRSEY----------TSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSY----------  462 (791)
T ss_dssp             BSSEEEECTTSCCC----------EEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------C----------
T ss_pred             ccceeEeeccCCcc----------eeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcce----------
Confidence            34677777654321          122223455778999885 455566666788888877532100000          


Q ss_pred             ccccccccccccccccCCccceEEEEeC-CCCe-EEEEecCCcEEEEECCCCceeeeeee--CeeeEEEEeeCCCCcEEE
Q 036314          168 QVEEPQLEGEAISTLVGHTQCVSSVVWP-QQET-IYSASWDHSVRTWDVEMGKDLSDIFC--GKALNCIDIGGEGSALIA  243 (347)
Q Consensus       168 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~-l~s~s~dg~v~vwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~la  243 (347)
                                 ...+...-.....|++. .++. +++-...+.|.+.++.... ...+..  ......+++.+..+.++.
T Consensus       463 -----------~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~-~~~l~~~~l~~P~gIaVDp~~g~LYw  530 (791)
T 3m0c_C          463 -----------DTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK-RKTLFRENGSKPRAIVVDPVHGFMYW  530 (791)
T ss_dssp             -----------EEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSS-EEEEEECTTCCEEEEEEETTTTEEEE
T ss_pred             -----------eEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCe-EEEEEeCCCCCcceEEEecCCCCEEE
Confidence                       00011011123345552 3444 4455566789999986433 333322  234678888877676666


Q ss_pred             EecC-CCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecC--CCCeEEE
Q 036314          244 AGGS-DPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDS--HKDKVLC  320 (347)
Q Consensus       244 ~~~~-d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~--h~~~v~~  320 (347)
                      +-.. .+.|...++...  . ....+.....+...|++++.+..+.++=.....|...|++.......+..  .-....+
T Consensus       531 tD~g~~~~I~~~~~dG~--~-~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~g  607 (791)
T 3m0c_C          531 TDWGTPAKIKKGGLNGV--D-IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFS  607 (791)
T ss_dssp             EECSSSCEEEEEETTSC--C-EEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEE
T ss_pred             ecCCCCCeEEEEecCCC--c-eEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCE
Confidence            6433 378888887632  1 12223333457788999987776666656678899999975433222222  1223445


Q ss_pred             EeecCCCEEEEccCCceEEE
Q 036314          321 ADWWRGDSVISGGVDSKLCV  340 (347)
Q Consensus       321 ~~~~~~~~l~s~s~D~~v~v  340 (347)
                      ++...+..+++-...+.|..
T Consensus       608 lav~~~~lYwtD~~~~~I~~  627 (791)
T 3m0c_C          608 LAVFEDKVFWTDIINEAIFS  627 (791)
T ss_dssp             EEEETTEEEEEETTTTEEEE
T ss_pred             EEEeCCEEEEEECCCCEEEE
Confidence            55544444555444455443

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=96.72  E-value=0.42  Score=45.18  Aligned_cols=26  Identities=19%  Similarity=0.081  Sum_probs=22.0

Q ss_pred             EEEEEeCCCcEEEEEcCCCccceeec
Q 036314          287 HLISASYDGKVMLWDLRTAWPLSVID  312 (347)
Q Consensus       287 ~l~s~s~D~~i~lwd~~~~~~~~~~~  312 (347)
                      ++..++.|+.++.||.++|+.+-+++
T Consensus       486 ~vf~gt~dg~l~A~D~~tG~~lW~~~  511 (599)
T 1w6s_A          486 LVFYGTLDGYLKARDSDTGDLLWKFK  511 (599)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             EEEEECCCCeEEEEECCCCCEEEEee
Confidence            46678999999999999998876664

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=96.54  E-value=0.079  Score=47.91  Aligned_cols=150  Identities=11%  Similarity=0.050  Sum_probs=86.2

Q ss_pred             EEEEeC--CCCeEEEEecCCcEEEEECCCCceeeeeeeCeeeEEEEeeCCCCcEEEEecCCC----cEEEEeCCCCCCCC
Q 036314          190 SSVVWP--QQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEGSALIAAGGSDP----ILRIWDPRKPGTSA  263 (347)
Q Consensus       190 ~~~~~~--~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~d~----~i~iwd~~~~~~~~  263 (347)
                      ..+++.  +++.|+.+...+.|+.+|+..+..............+++++++..++++...++    .+..++...  ...
T Consensus       140 ~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g--~~~  217 (430)
T 3tc9_A          140 VWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRES--GFK  217 (430)
T ss_dssp             CEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGG--TSC
T ss_pred             CEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCC--cee
Confidence            345654  356677666658899999876553322222345677888776654666554332    344444321  122


Q ss_pred             CeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeec-CCCCeEEEEeecC-CC-EEEEccCCceEEE
Q 036314          264 PVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVID-SHKDKVLCADWWR-GD-SVISGGVDSKLCV  340 (347)
Q Consensus       264 ~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~-~h~~~v~~~~~~~-~~-~l~s~s~D~~v~v  340 (347)
                      ....+.. ......++++|++.+++++-..++.|..+|.+.+....... +.......++|++ |+ .+++-...+.|..
T Consensus       218 ~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~  296 (430)
T 3tc9_A          218 VITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILR  296 (430)
T ss_dssp             SEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             eeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEE
Confidence            1122321 23356688999544556666677899999998654322221 1123457889975 66 4566666777777


Q ss_pred             ee
Q 036314          341 SS  342 (347)
Q Consensus       341 w~  342 (347)
                      ++
T Consensus       297 ~~  298 (430)
T 3tc9_A          297 SD  298 (430)
T ss_dssp             EE
T ss_pred             Ee
Confidence            54

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=96.46  E-value=0.63  Score=44.14  Aligned_cols=225  Identities=13%  Similarity=0.084  Sum_probs=119.1

Q ss_pred             CCeEEEEcCCCe--EEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeeeeccccc
Q 036314           44 DNLGRVWKAGGV--CTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKAS  121 (347)
Q Consensus        44 d~~i~iw~~~~~--~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~  121 (347)
                      ...|+.-++.+.  ....+........+|+|.+..+   ....+-...+.|+.++++....        ....+..-...
T Consensus        17 ~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~---~ly~sD~~~~~I~r~~~~g~~~--------~~~v~~~~~~~   85 (619)
T 3s94_A           17 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHG---LIYWSDVSEEAIKRTEFNKTES--------VQNVVVSGLLS   85 (619)
T ss_dssp             SSBEEEECCC---------CBCCSCEEEEEEETTTT---EEEEEETTTTEEEEEEC-------------CEEEECSSCSC
T ss_pred             cccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCC---EEEEEECCCCeEEEEEccCCCc--------eEEEEeCCCCC
Confidence            346777776543  2223333445577889987544   3445556667888888764310        01122222245


Q ss_pred             eEEEEEeCCC-CEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCcccccccccccccccc-CCccceEEEEe-CCCC
Q 036314          122 VHSIAAETSG-NMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLV-GHTQCVSSVVW-PQQE  198 (347)
Q Consensus       122 V~~v~~s~~~-~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~-~~~~  198 (347)
                      ...+++++.+ ++.++-...+.|.+.++.....                          ..+. ..-..-..+++ |.+.
T Consensus        86 P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~--------------------------~~l~~~~l~~P~~Iavdp~~g  139 (619)
T 3s94_A           86 PDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR--------------------------KVLFWQELDQPRAIALDPSSG  139 (619)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTSCSC--------------------------EEEECSSCSCCCCEEEETTTT
T ss_pred             cCeEEEEecCCEEEEEeCCCCEEEEEECCCCCE--------------------------EEEEeCCCCCCceEEEecCCC
Confidence            7889999855 4556666778999988753210                          0000 01111234555 4455


Q ss_pred             eEEEEecC--CcEEEEECCCCceeeeeee--CeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCC
Q 036314          199 TIYSASWD--HSVRTWDVEMGKDLSDIFC--GKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSW  274 (347)
Q Consensus       199 ~l~s~s~d--g~v~vwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~  274 (347)
                      .|+-+.+.  +.|...++. |.....+..  ....+.+++++.++.+..+-...+.|..+|+...... .+  ..+....
T Consensus       140 ~ly~tD~g~~~~I~r~~~d-G~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~-~~--~~~~~~~  215 (619)
T 3s94_A          140 FMYWTDWGEVPKIERAGMD-GSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQ-AV--VKGSLPH  215 (619)
T ss_dssp             EEEEEECSSSCEEEEEETT-SCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC------------
T ss_pred             eEEEeccCCCCEEEEEECC-CCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccE-EE--EeCCCCC
Confidence            56555443  455555553 332222221  2245778888777777777777889999998642211 11  1111222


Q ss_pred             eeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceee
Q 036314          275 ISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVI  311 (347)
Q Consensus       275 v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~  311 (347)
                      -..+++..+  .+.++-...+.|...|..+++....+
T Consensus       216 P~gi~~~~~--~ly~td~~~~~V~~~d~~tg~~~~~i  250 (619)
T 3s94_A          216 PFALTLFED--ILYWTDWSTHSILACNKYTGEGLREI  250 (619)
T ss_dssp             CCCEEESSS--EEEEECTTTCSEEEEESSSCCCCEEC
T ss_pred             ceEEEEeCC--EEEEecCCCCEEEEEECCCCcccEEE
Confidence            235666544  45666667788999998877654443

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=96.40  E-value=0.43  Score=41.56  Aligned_cols=112  Identities=8%  Similarity=0.079  Sum_probs=67.3

Q ss_pred             eEEEEecCCcEEEEECC-------CCceeeeeeeCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCC--CCCCeEEec
Q 036314          199 TIYSASWDHSVRTWDVE-------MGKDLSDIFCGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPG--TSAPVFQFS  269 (347)
Q Consensus       199 ~l~s~s~dg~v~vwd~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~--~~~~~~~~~  269 (347)
                      +++....+|.+..|++.       +.+.++++..+..+..+...+..+ .|..+-++..|..+|.+...  ....+..+.
T Consensus       145 yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g-~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~  223 (355)
T 3amr_A          145 YAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYG-RLYIAEEDEAIWKFSAEPDGGSNGTVIDRAD  223 (355)
T ss_dssp             EEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTT-EEEEEETTTEEEEEECSTTSCSCCEEEEEBS
T ss_pred             EEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCC-eEEEecccceEEEEeCCcCCCCCceEEEEec
Confidence            57777888999999883       224456666555666666655444 55667777667777754322  111222221


Q ss_pred             -CCC-CCeeEEEe--CCCCC-eEEEEEeCCCcEEEEEcC-CCccceee
Q 036314          270 -SHN-SWISACKW--HNKSW-FHLISASYDGKVMLWDLR-TAWPLSVI  311 (347)
Q Consensus       270 -~h~-~~v~~v~~--s~~~~-~~l~s~s~D~~i~lwd~~-~~~~~~~~  311 (347)
                       ++- .-+..++.  .+++. ++|+|+-.+.+..+||.+ +.+.+..|
T Consensus       224 ~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f  271 (355)
T 3amr_A          224 GRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADF  271 (355)
T ss_dssp             SSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEE
T ss_pred             CCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEE
Confidence             222 24566665  45554 556666578899999997 55555555

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=96.32  E-value=0.73  Score=43.37  Aligned_cols=49  Identities=14%  Similarity=0.037  Sum_probs=30.5

Q ss_pred             CCcEEEEEcCCCccceeecCCCCeEEEEee-cCCCEEEEccCCceEEEeec
Q 036314          294 DGKVMLWDLRTAWPLSVIDSHKDKVLCADW-WRGDSVISGGVDSKLCVSSG  343 (347)
Q Consensus       294 D~~i~lwd~~~~~~~~~~~~h~~~v~~~~~-~~~~~l~s~s~D~~v~vw~~  343 (347)
                      +|.|.-||+++++.+=+...+ ..+..-.. -.+..+..++.|+.++.++.
T Consensus       465 ~G~l~A~D~~tG~~~W~~~~~-~~~~~g~~~tagglvf~g~~dg~l~A~D~  514 (582)
T 1flg_A          465 VGSLRAMDPVSGKVVWEHKEH-LPLWAGVLATAGNLVFTGTGDGYFKAFDA  514 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEES-SCCCSCCEEETTTEEEEECTTSEEEEEET
T ss_pred             cceEEEEECCCCCEEEEecCC-CCCcccceEeCCCEEEEECCCCcEEEEEC
Confidence            678999999998765433321 12111111 13667777889999988874

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=96.26  E-value=0.49  Score=40.80  Aligned_cols=230  Identities=10%  Similarity=0.053  Sum_probs=110.1

Q ss_pred             CCceeeccCCCCCEEEEEecCCeEEEEcCCCe-EEEEee--ccCCceEEEEEeecCCCceEEEEEccCCCcE-EEEeccc
Q 036314           24 DDWVSAVDGSNPGFILTGCYDNLGRVWKAGGV-CTHILE--GHCGAVSSVNIIKSDGLKYVTVATASKDQTL-RLWKFDA   99 (347)
Q Consensus        24 ~~~v~~~~~~~~~~l~sg~~d~~i~iw~~~~~-~~~~l~--~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v-~~wd~~~   99 (347)
                      ...+.++.+.++..++ ++.++.+..-.-.|+ ......  .+.+.+..+.+.+++    ..++. +.++.| |-.|  .
T Consensus        79 ~~~~~~i~~~~~~~~~-~g~~g~i~~S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~----~~~~~-~~~g~v~~S~D--g  150 (327)
T 2xbg_A           79 DYRFNSVSFQGNEGWI-VGEPPIMLHTTDGGQSWSQIPLDPKLPGSPRLIKALGNG----SAEMI-TNVGAIYRTKD--S  150 (327)
T ss_dssp             CCEEEEEEEETTEEEE-EEETTEEEEESSTTSSCEECCCCTTCSSCEEEEEEEETT----EEEEE-ETTCCEEEESS--T
T ss_pred             CccEEEEEecCCeEEE-EECCCeEEEECCCCCCceECccccCCCCCeEEEEEECCC----CEEEE-eCCccEEEEcC--C
Confidence            3456777775533333 456665544332232 222211  234557777776532    23444 345544 2222  1


Q ss_pred             cccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCcccccccccccc
Q 036314          100 EELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAI  179 (347)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (347)
                      +      +.++..  ..++...+..+++.+++.+++.+...+..+-+|-. +.    ..                  +.+
T Consensus       151 G------~tW~~~--~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~g-G~----tW------------------~~~  199 (327)
T 2xbg_A          151 G------KNWQAL--VQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPG-QT----AW------------------EPH  199 (327)
T ss_dssp             T------SSEEEE--ECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTT-CS----SC------------------EEE
T ss_pred             C------CCCEEe--ecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCC-CC----ce------------------eEC
Confidence            2      112222  12345578889999988877765443333333310 00    00                  000


Q ss_pred             ccccCCccceEEEEeCCCCeEEEEecCCcEEEEECCCCceeeeee-----eCeeeEEEEeeCCCCcEEEEecCCCcEEEE
Q 036314          180 STLVGHTQCVSSVVWPQQETIYSASWDHSVRTWDVEMGKDLSDIF-----CGKALNCIDIGGEGSALIAAGGSDPILRIW  254 (347)
Q Consensus       180 ~~~~~h~~~v~~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~la~~~~d~~i~iw  254 (347)
                      .  ......+..+.+.....++.++.+|.+.+.+...++.-..+.     ....+..+.+.++ ..+++++. ++.+. +
T Consensus       200 ~--~~~~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~-~~~~~~g~-~g~i~-~  274 (327)
T 2xbg_A          200 N--RTTSRRLHNMGFTPDGRLWMIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTP-NEVWLAGG-AGALL-C  274 (327)
T ss_dssp             E--CCSSSCEEEEEECTTSCEEEEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSS-SCEEEEES-TTCEE-E
T ss_pred             C--CCCCCccceeEECCCCCEEEEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCC-CEEEEEeC-CCeEE-E
Confidence            0  112234556666433455566677877776422122222121     1123566666543 45655554 66663 3


Q ss_pred             eCCCCCCCCCeEEec---CCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEc
Q 036314          255 DPRKPGTSAPVFQFS---SHNSWISACKWHNKSWFHLISASYDGKVMLWDL  302 (347)
Q Consensus       255 d~~~~~~~~~~~~~~---~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~  302 (347)
                      .......   ...+.   .+...+.++.|.+++  .++.++.+|.|.-++-
T Consensus       275 S~DgG~t---W~~~~~~~~~~~~~~~v~~~~~~--~~~~~G~~G~i~~~~~  320 (327)
T 2xbg_A          275 SQDGGQT---WQQDVDVKKVPSNFYKILFFSPD--QGFILGQKGILLRYVT  320 (327)
T ss_dssp             ESSTTSS---CEECGGGTTSSSCCCEEEEEETT--EEEEECSTTEEEEECC
T ss_pred             eCCCCcc---cEEcCccCCCCCCeEEEEEECCC--ceEEEcCCceEEEEcC
Confidence            3222222   22222   223456788886544  3677788898776654

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=96.12  E-value=0.98  Score=42.92  Aligned_cols=215  Identities=6%  Similarity=-0.062  Sum_probs=120.5

Q ss_pred             CCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCC-EEEEeeCCCcEEEEecCCCCCCCccceeeeccCC
Q 036314           88 KDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGN-MVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGN  166 (347)
Q Consensus        88 ~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~-~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~  166 (347)
                      ..+.|+.-+++..+.       .....+ ..-..+..++|++.+. ++++-..++.|..+++......    .       
T Consensus        13 ~~~~I~~i~l~~~~~-------~~~~~~-~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~----~-------   73 (628)
T 4a0p_A           13 RRADIRRISLETNNN-------NVAIPL-TGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALE----H-------   73 (628)
T ss_dssp             ETTEEEEEESSCTTC-------EEECCC-CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE----E-------
T ss_pred             eCCcEEEEECCCCCc-------ceEEEc-CCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcE----E-------
Confidence            456788888865321       011111 1234577899998655 4456667788888876532100    0       


Q ss_pred             CccccccccccccccccCCccceEEEEeC-CCCeE-EEEecCCcEEEEECCCCceeeeee--eCeeeEEEEeeCCCCcEE
Q 036314          167 NQVEEPQLEGEAISTLVGHTQCVSSVVWP-QQETI-YSASWDHSVRTWDVEMGKDLSDIF--CGKALNCIDIGGEGSALI  242 (347)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~l-~s~s~dg~v~vwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l  242 (347)
                                    .+.........+++. .++.| .+-...+.|.+.++.... ...+.  .-.....+++.|..+.++
T Consensus        74 --------------v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~-~~~l~~~~l~~P~~iavdp~~G~lY  138 (628)
T 4a0p_A           74 --------------VVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQH-RQVLVWKDLDSPRALALDPAEGFMY  138 (628)
T ss_dssp             --------------EECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTT-CEEEECSSCCCEEEEEEETTTTEEE
T ss_pred             --------------EEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCc-EEEEEeCCCCCcccEEEccCCCeEE
Confidence                          000000122345542 33444 444556788888875433 22222  123457888887667666


Q ss_pred             EEe-cCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecCCCCeEEEE
Q 036314          243 AAG-GSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKVLCA  321 (347)
Q Consensus       243 a~~-~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h~~~v~~~  321 (347)
                      .+- +..+.|...++....    ...+.....+...+++++++..+.++=...+.|...|++.... ..+...-....++
T Consensus       139 ~tD~g~~~~I~r~~~dG~~----~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~~P~gl  213 (628)
T 4a0p_A          139 WTEWGGKPKIDRAAMDGSE----RTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADDLPHPFGL  213 (628)
T ss_dssp             EEECSSSCEEEEEETTSCS----CEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECCSCEEEE
T ss_pred             EeCCCCCCEEEEEeCCCCc----eEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeeccCCCceEE
Confidence            654 335788888876322    2233234556788999998777666667788999999975433 3333333344566


Q ss_pred             eecCCCEEEEccCCceEEEe
Q 036314          322 DWWRGDSVISGGVDSKLCVS  341 (347)
Q Consensus       322 ~~~~~~~l~s~s~D~~v~vw  341 (347)
                      +...+..++|-...+.|...
T Consensus       214 av~~~~ly~tD~~~~~I~~~  233 (628)
T 4a0p_A          214 TQYQDYIYWTDWSRRSIERA  233 (628)
T ss_dssp             EEETTEEEEEETTTTEEEEE
T ss_pred             EEECCEEEEecCCCCEEEEE
Confidence            65444445554445555443

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=95.93  E-value=0.72  Score=39.78  Aligned_cols=194  Identities=8%  Similarity=0.060  Sum_probs=104.2

Q ss_pred             EEEEEeCCCC-EEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCcccccccccccccccc--C-CccceEEEEe----
Q 036314          123 HSIAAETSGN-MVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLV--G-HTQCVSSVVW----  194 (347)
Q Consensus       123 ~~v~~s~~~~-~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-h~~~v~~~~~----  194 (347)
                      -+++|++... ++++.-..++|..|+.......    .. .                +..+.  + ....+.++.+    
T Consensus        16 E~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~----~~-~----------------~~~~s~~g~~~~~~sGl~~~~~D   74 (334)
T 2p9w_A           16 EDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHF----NV-V----------------IDGASSNGDGEQQMSGLSLLTHD   74 (334)
T ss_dssp             SCEEEETTTTEEEEEETTTTEEEEECTTTCCEE----EE-C----------------CTTTCCSSCCSEEEEEEEESSSS
T ss_pred             cCccCcCCCCEEEEEeccCCEEEEEcCCCCeEE----EE-e----------------cCCccccCCCcceeeEEEEeccC
Confidence            3578877554 4455558999999987532110    00 0                00000  0 0113467788    


Q ss_pred             CCCCeEEEEe-------------cCCcEEEEECC---CCceeeeeee-----C---------eeeEEEEeeCCCCcEEEE
Q 036314          195 PQQETIYSAS-------------WDHSVRTWDVE---MGKDLSDIFC-----G---------KALNCIDIGGEGSALIAA  244 (347)
Q Consensus       195 ~~~~~l~s~s-------------~dg~v~vwd~~---~~~~~~~~~~-----~---------~~~~~~~~~~~~~~~la~  244 (347)
                      +++..+++..             .++.|..+|+.   +++.+.....     .         .....++..+. ++..++
T Consensus        75 ~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~-GnaYVt  153 (334)
T 2p9w_A           75 NSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRD-GNSYVA  153 (334)
T ss_dssp             SCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTT-SCEEEE
T ss_pred             CCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCC-CCEEEe
Confidence            4433444332             25779999998   7766543321     1         13567777665 455666


Q ss_pred             ecCC-CcEEEEeCCCCCCCCCeEEec----CCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCcc--ceeec--CCC
Q 036314          245 GGSD-PILRIWDPRKPGTSAPVFQFS----SHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWP--LSVID--SHK  315 (347)
Q Consensus       245 ~~~d-~~i~iwd~~~~~~~~~~~~~~----~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~--~~~~~--~h~  315 (347)
                      ++.. +.|..++....  ......+.    ...-..+.+++.|++..+++.-+ ++.+..+|+++...  +. ..  +..
T Consensus       154 ~s~~~~~I~rV~pdG~--~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~-~g~L~~fD~~~pv~~~v~-~~~~G~~  229 (334)
T 2p9w_A          154 FALGMPAIARVSADGK--TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGG-PRALTAFDVSKPYAWPEP-VKINGDF  229 (334)
T ss_dssp             EEESSCEEEEECTTSC--CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESS-SSSEEEEECSSSSCCCEE-CEESSCC
T ss_pred             CCCCCCeEEEEeCCCC--EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcC-CCeEEEEcCCCCcceeec-ccccCCc
Confidence            7767 77777776521  11111111    11123567899999976555555 99999999985432  21 11  211


Q ss_pred             ---CeEEEE-ee-cCCCE-EEEccCCceEEEee
Q 036314          316 ---DKVLCA-DW-WRGDS-VISGGVDSKLCVSS  342 (347)
Q Consensus       316 ---~~v~~~-~~-~~~~~-l~s~s~D~~v~vw~  342 (347)
                         ...-.+ .- .+|+. |++.+..+.+.+.+
T Consensus       230 ~~~~~~dgilp~~~~G~vllV~~~~~~~~~l~S  262 (334)
T 2p9w_A          230 GTLSGTEKIVTVPVGNESVLVGARAPYAISFRS  262 (334)
T ss_dssp             CCCTTEEEEEEEEETTEEEEEEEETTEEEEEEC
T ss_pred             ccccCcccccccccCCEEEEEEcCCCCEEEEEC
Confidence               112222 11 35665 66666666665543

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=95.84  E-value=0.99  Score=40.69  Aligned_cols=153  Identities=6%  Similarity=0.047  Sum_probs=82.4

Q ss_pred             eEEEEEeCC---CCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEeC-CC
Q 036314          122 VHSIAAETS---GNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWP-QQ  197 (347)
Q Consensus       122 V~~v~~s~~---~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~  197 (347)
                      ...++++++   +.++++-.. +.|+.++..+..                          +..+.........+++. ++
T Consensus       141 P~gvavd~~s~~g~Lyv~D~~-~~I~~id~~~g~--------------------------v~~~~~~~~~P~giavd~dG  193 (433)
T 4hw6_A          141 IWRMMFDPNSNYDDLYWVGQR-DAFRHVDFVNQY--------------------------VDIKTTNIGQCADVNFTLNG  193 (433)
T ss_dssp             CCEEEECTTTTTCEEEEECBT-SCEEEEETTTTE--------------------------EEEECCCCSCEEEEEECTTC
T ss_pred             CceEEEccccCCCEEEEEeCC-CCEEEEECCCCE--------------------------EEEeecCCCCccEEEECCCC
Confidence            457889884   554444333 888888875431                          11111122335677774 55


Q ss_pred             CeEEEEecCC-----cEEEEECCCCcee-eeeeeCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCC
Q 036314          198 ETIYSASWDH-----SVRTWDVEMGKDL-SDIFCGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSH  271 (347)
Q Consensus       198 ~~l~s~s~dg-----~v~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h  271 (347)
                      + |+.+...+     .+...+...+... ..+........+++++.++.+.++-..++.|+.+|.........+... +.
T Consensus       194 ~-lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~-~~  271 (433)
T 4hw6_A          194 D-MVVVDDQSSDTNTGIYLFTRASGFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMM-DT  271 (433)
T ss_dssp             C-EEEEECCSCTTSEEEEEECGGGTTCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEEC-SC
T ss_pred             C-EEEEcCCCCcccceEEEEECCCCeeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEecc-CC
Confidence            5 55444322     1222332221110 111112233456676656667766667788999987632110111111 12


Q ss_pred             CCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcC
Q 036314          272 NSWISACKWHNKSWFHLISASYDGKVMLWDLR  303 (347)
Q Consensus       272 ~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~  303 (347)
                      ...-..++|+|++.++.++-.....|+.++.+
T Consensus       272 ~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d  303 (433)
T 4hw6_A          272 KGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYN  303 (433)
T ss_dssp             CSSCEEEEECTTSSEEEEEETTTTEEEEEEBC
T ss_pred             CCCcccEEEeCCCCEEEEEeCCCCEEEEEeCC
Confidence            22334699999997667777778899998876

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=95.40  E-value=1.9  Score=40.92  Aligned_cols=229  Identities=9%  Similarity=0.005  Sum_probs=130.0

Q ss_pred             EEEEEecCCeEEEEcCCCe-EEEEee-ccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeee
Q 036314           37 FILTGCYDNLGRVWKAGGV-CTHILE-GHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKI  114 (347)
Q Consensus        37 ~l~sg~~d~~i~iw~~~~~-~~~~l~-~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~  114 (347)
                      +|+-+ ....|+.-++.+. ....+. ..-..+..|+|.+..+   ....+-..++.|+.++++....       +  ..
T Consensus         8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~---~lywtD~~~~~I~r~~~~g~~~-------~--~v   74 (628)
T 4a0p_A            8 FLLFS-RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDN---RIYWTDISLKTISRAFMNGSAL-------E--HV   74 (628)
T ss_dssp             EEEEE-ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTT---EEEEEETTTTEEEEEETTSCSC-------E--EE
T ss_pred             EEEEE-eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCC---EEEEEECCCCeEEEEECCCCCc-------E--EE
Confidence            44433 4456777776532 222221 2234577899987544   3456667788999998865321       1  11


Q ss_pred             eeccccceEEEEEeCCCC-EEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCcccccccccccccccc-CCccceEEE
Q 036314          115 LRGHKASVHSIAAETSGN-MVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLV-GHTQCVSSV  192 (347)
Q Consensus       115 ~~~h~~~V~~v~~s~~~~-~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~  192 (347)
                      +..-......+++.+.+. +.++-...+.|.+.++.....                          ..+. ..-..-..+
T Consensus        75 ~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~--------------------------~~l~~~~l~~P~~i  128 (628)
T 4a0p_A           75 VEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHR--------------------------QVLVWKDLDSPRAL  128 (628)
T ss_dssp             ECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTC--------------------------EEEECSSCCCEEEE
T ss_pred             EeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcE--------------------------EEEEeCCCCCcccE
Confidence            211123456788887654 555666677888887653210                          0000 111223566


Q ss_pred             Ee-CCCCeEEEEec--CCcEEEEECCCCceeeeee-eCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEe
Q 036314          193 VW-PQQETIYSASW--DHSVRTWDVEMGKDLSDIF-CGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQF  268 (347)
Q Consensus       193 ~~-~~~~~l~s~s~--dg~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~  268 (347)
                      ++ |....|+-+.+  .+.|...++.... ...+. .......+++++.++.+..+-...+.|..+|+.....    ..+
T Consensus       129 avdp~~G~lY~tD~g~~~~I~r~~~dG~~-~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~----~v~  203 (628)
T 4a0p_A          129 ALDPAEGFMYWTEWGGKPKIDRAAMDGSE-RTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR----EVI  203 (628)
T ss_dssp             EEETTTTEEEEEECSSSCEEEEEETTSCS-CEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC----EEE
T ss_pred             EEccCCCeEEEeCCCCCCEEEEEeCCCCc-eEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce----EEe
Confidence            66 44556665553  3566666664332 22222 2234577888877777777777888999999864322    223


Q ss_pred             cCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceee
Q 036314          269 SSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVI  311 (347)
Q Consensus       269 ~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~  311 (347)
                      .........+++..  .++.++-...+.|...|..+++....+
T Consensus       204 ~~~l~~P~glav~~--~~ly~tD~~~~~I~~~dk~tg~~~~~l  244 (628)
T 4a0p_A          204 ADDLPHPFGLTQYQ--DYIYWTDWSRRSIERANKTSGQNRTII  244 (628)
T ss_dssp             EECCSCEEEEEEET--TEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred             eccCCCceEEEEEC--CEEEEecCCCCEEEEEECCCCCceEEE
Confidence            33334445677654  355666667888999997776554443

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=95.25  E-value=2.1  Score=40.54  Aligned_cols=182  Identities=10%  Similarity=0.053  Sum_probs=99.0

Q ss_pred             CCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEE-EEeeCCCcEEEEecCCCCCCCccceeeeccCC
Q 036314           88 KDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMV-CSGSWDCTISLWRTNDSDAAGNQVSIKKRKGN  166 (347)
Q Consensus        88 ~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l-~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~  166 (347)
                      ....|+.-+++....        ....+...-.....++|++.+..| ++-...+.|..+++......            
T Consensus        16 ~~~~I~~i~~~~~~~--------~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~------------   75 (619)
T 3s94_A           16 NRRDLRLVDATNGKE--------NATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESV------------   75 (619)
T ss_dssp             CSSBEEEECCC-----------------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----C------------
T ss_pred             ccccEEEEeCCCCcc--------eEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCce------------
Confidence            345688888764310        001111223446789999866544 45555677888876532100            


Q ss_pred             CccccccccccccccccCCccceEEEEeC-CCCeE-EEEecCCcEEEEECCCCceeeeee--eCeeeEEEEeeCCCCcEE
Q 036314          167 NQVEEPQLEGEAISTLVGHTQCVSSVVWP-QQETI-YSASWDHSVRTWDVEMGKDLSDIF--CGKALNCIDIGGEGSALI  242 (347)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~l-~s~s~dg~v~vwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l  242 (347)
                                  ...+...-.....+++. .++.| .+-...+.|.+.++.... ...+.  .-.....+++.|.++.++
T Consensus        76 ------------~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~-~~~l~~~~l~~P~~Iavdp~~g~ly  142 (619)
T 3s94_A           76 ------------QNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL-RKVLFWQELDQPRAIALDPSSGFMY  142 (619)
T ss_dssp             ------------EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECSSCSCCCCEEEETTTTEEE
T ss_pred             ------------EEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCC-EEEEEeCCCCCCceEEEecCCCeEE
Confidence                        00011111234566663 34544 444556789999986433 22332  123456788877766666


Q ss_pred             EEe-cCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCC
Q 036314          243 AAG-GSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTA  305 (347)
Q Consensus       243 a~~-~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~  305 (347)
                      .+- +..+.|...++....   ..........+-..+++++++..+.++=+..+.|...|++..
T Consensus       143 ~tD~g~~~~I~r~~~dG~~---~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~  203 (619)
T 3s94_A          143 WTDWGEVPKIERAGMDGSS---RFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGT  203 (619)
T ss_dssp             EEECSSSCEEEEEETTSCS---CEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCC
T ss_pred             EeccCCCCEEEEEECCCCc---eEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCC
Confidence            654 334677777765321   122222344567889999887776666667788999998753

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=95.25  E-value=1.3  Score=40.59  Aligned_cols=159  Identities=15%  Similarity=0.023  Sum_probs=88.7

Q ss_pred             eEEEEEeCC-C-CEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEe-----
Q 036314          122 VHSIAAETS-G-NMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW-----  194 (347)
Q Consensus       122 V~~v~~s~~-~-~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-----  194 (347)
                      ...|+|+|. . +++++-...+.|++.|..+....    .+                  ...-.........++|     
T Consensus       141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~----~l------------------~~~~~~~~~~p~~ia~~~~~~  198 (496)
T 3kya_A          141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLS----SP------------------LNINTIPTNRIRSIAFNKKIE  198 (496)
T ss_dssp             EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEE----EE------------------ECCTTSSCSBEEEEEECCCBT
T ss_pred             CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEE----EE------------------EccCccccCCCcEEEEeeccc
Confidence            467899983 4 44454444467888877643110    00                  0000001123566666     


Q ss_pred             --C-CCCeEEEEecCC-------cEEEEECCC-Ccee-----eeeeeCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCC-
Q 036314          195 --P-QQETIYSASWDH-------SVRTWDVEM-GKDL-----SDIFCGKALNCIDIGGEGSALIAAGGSDPILRIWDPR-  257 (347)
Q Consensus       195 --~-~~~~l~s~s~dg-------~v~vwd~~~-~~~~-----~~~~~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~-  257 (347)
                        . ++++|+.+...+       .+.+.+... +...     ..+........+++++.++.++++-..++.|..+|+. 
T Consensus       199 ~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~  278 (496)
T 3kya_A          199 GYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVD  278 (496)
T ss_dssp             TTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETTTTEEEEECHHH
T ss_pred             ccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEECCCCEEEEEeccc
Confidence              4 556566665554       255665333 2221     1221112334667777677888888888999999986 


Q ss_pred             ------CCCCCC-----------CeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcC
Q 036314          258 ------KPGTSA-----------PVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLR  303 (347)
Q Consensus       258 ------~~~~~~-----------~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~  303 (347)
                            ......           .+... +...+-..++|+|++..+.++-+....|+.+|.+
T Consensus       279 ~~~~~~tg~~~tp~~~~~~g~~~~l~~~-~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~d  340 (496)
T 3kya_A          279 YFKTIKNGGSWDPIVKNNPNTFKQLFTI-ADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYD  340 (496)
T ss_dssp             HHHHHHTTCCCCCBGGGCTTTEEEEEEC-SSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             ccccccCceeecccccccccccceeEec-CCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence                  222100           11222 2334567899999997656666778899997664

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=95.18  E-value=1.2  Score=37.43  Aligned_cols=103  Identities=15%  Similarity=0.216  Sum_probs=50.7

Q ss_pred             CCCeEEEEecC-----CcEEEEECCCCceeee--eeeCee-eEEEEeeCCCCcEEEEecCC-----CcEEEEeCCCCCCC
Q 036314          196 QQETIYSASWD-----HSVRTWDVEMGKDLSD--IFCGKA-LNCIDIGGEGSALIAAGGSD-----PILRIWDPRKPGTS  262 (347)
Q Consensus       196 ~~~~l~s~s~d-----g~v~vwd~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~la~~~~d-----~~i~iwd~~~~~~~  262 (347)
                      ++..++.|+.+     ..+.+||+.+.+....  +..... ..++.+   ++.+++.|+.+     +.+.+||+... ..
T Consensus       159 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~i~v~GG~~~~~~~~~v~~yd~~~~-~W  234 (301)
T 2vpj_A          159 SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL---NDHIYVVGGFDGTAHLSSVEAYNIRTD-SW  234 (301)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE---TTEEEEECCBCSSSBCCCEEEEETTTT-EE
T ss_pred             CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE---CCEEEEEeCCCCCcccceEEEEeCCCC-cE
Confidence            44555666554     3588899887654321  111111 122222   34577777654     56889998642 11


Q ss_pred             CCeEEecCCCCCeeEEEeCCCCCeEEEEEeCC-----CcEEEEEcCCC
Q 036314          263 APVFQFSSHNSWISACKWHNKSWFHLISASYD-----GKVMLWDLRTA  305 (347)
Q Consensus       263 ~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D-----~~i~lwd~~~~  305 (347)
                      ..+..+.........+.+  ++ .+++.|+.+     ..+.+||+++.
T Consensus       235 ~~~~~~p~~r~~~~~~~~--~~-~i~v~GG~~~~~~~~~v~~yd~~~~  279 (301)
T 2vpj_A          235 TTVTSMTTPRCYVGATVL--RG-RLYAIAGYDGNSLLSSIECYDPIID  279 (301)
T ss_dssp             EEECCCSSCCBSCEEEEE--TT-EEEEECCBCSSSBEEEEEEEETTTT
T ss_pred             EECCCCCCcccceeEEEE--CC-EEEEEcCcCCCcccccEEEEcCCCC
Confidence            111111111112223333  33 456666655     35677888754

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=94.82  E-value=1.6  Score=36.82  Aligned_cols=103  Identities=15%  Similarity=0.198  Sum_probs=49.6

Q ss_pred             CCCeEEEEecC-------CcEEEEECCCCceeee--eeeCe-eeEEEEeeCCCCcEEEEecCC-----CcEEEEeCCCCC
Q 036314          196 QQETIYSASWD-------HSVRTWDVEMGKDLSD--IFCGK-ALNCIDIGGEGSALIAAGGSD-----PILRIWDPRKPG  260 (347)
Q Consensus       196 ~~~~l~s~s~d-------g~v~vwd~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~la~~~~d-----~~i~iwd~~~~~  260 (347)
                      ++..++.|+.+       ..+.+||+.+.+....  +.... ...++.+   ++.+++.|+.+     +.+.+||+... 
T Consensus       155 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~-  230 (302)
T 2xn4_A          155 GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL---NNLLYAVGGHDGPLVRKSVEVYDPTTN-  230 (302)
T ss_dssp             TTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE---TTEEEEECCBSSSSBCCCEEEEETTTT-
T ss_pred             CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEE---CCEEEEECCCCCCcccceEEEEeCCCC-
Confidence            44455555443       3478899887654321  11111 1122222   34577777654     46889998642 


Q ss_pred             CCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCC-----cEEEEEcCCC
Q 036314          261 TSAPVFQFSSHNSWISACKWHNKSWFHLISASYDG-----KVMLWDLRTA  305 (347)
Q Consensus       261 ~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~-----~i~lwd~~~~  305 (347)
                      ....+..+.........+.+  ++ .+++.|+.++     .+.+||+++.
T Consensus       231 ~W~~~~~~~~~r~~~~~~~~--~~-~i~v~GG~~~~~~~~~v~~yd~~~~  277 (302)
T 2xn4_A          231 AWRQVADMNMCRRNAGVCAV--NG-LLYVVGGDDGSCNLASVEYYNPTTD  277 (302)
T ss_dssp             EEEEECCCSSCCBSCEEEEE--TT-EEEEECCBCSSSBCCCEEEEETTTT
T ss_pred             CEeeCCCCCCccccCeEEEE--CC-EEEEECCcCCCcccccEEEEcCCCC
Confidence            11111111111111122333  33 4566666553     4788888764

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=94.75  E-value=1.6  Score=36.76  Aligned_cols=93  Identities=12%  Similarity=0.141  Sum_probs=45.4

Q ss_pred             CcEEEEECCCCceeee--eeeCeeeEEEEeeCCCCcEEEEecCC-----CcEEEEeCCCCCCCCCeEEecCCCCCeeEEE
Q 036314          207 HSVRTWDVEMGKDLSD--IFCGKALNCIDIGGEGSALIAAGGSD-----PILRIWDPRKPGTSAPVFQFSSHNSWISACK  279 (347)
Q Consensus       207 g~v~vwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~la~~~~d-----~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~  279 (347)
                      ..+.+||+.+.+....  +.....-.++...  ++.+++.|+.+     ..+.+||+.... ...+..+........++.
T Consensus       169 ~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~-W~~~~~~p~~r~~~~~~~  245 (306)
T 3ii7_A          169 NSCEVYDPATETWTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNE-WKMVSPMPWKGVTVKCAA  245 (306)
T ss_dssp             CCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTE-EEECCCCSCCBSCCEEEE
T ss_pred             ceEEEeCCCCCeEEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCc-EEECCCCCCCccceeEEE
Confidence            4478899887653321  1111111112221  34577777653     468889986421 111111111122223333


Q ss_pred             eCCCCCeEEEEEeCC-----CcEEEEEcCCC
Q 036314          280 WHNKSWFHLISASYD-----GKVMLWDLRTA  305 (347)
Q Consensus       280 ~s~~~~~~l~s~s~D-----~~i~lwd~~~~  305 (347)
                      +  ++ .+++.|+.+     ..+.+||+++.
T Consensus       246 ~--~~-~i~v~GG~~~~~~~~~~~~yd~~~~  273 (306)
T 3ii7_A          246 V--GS-IVYVLAGFQGVGRLGHILEYNTETD  273 (306)
T ss_dssp             E--TT-EEEEEECBCSSSBCCEEEEEETTTT
T ss_pred             E--CC-EEEEEeCcCCCeeeeeEEEEcCCCC
Confidence            4  33 466777644     46888888764

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=94.15  E-value=3.1  Score=37.41  Aligned_cols=235  Identities=9%  Similarity=0.011  Sum_probs=118.0

Q ss_pred             eEEEEEeec-CCCceEEEEEccCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCC---Cc
Q 036314           67 VSSVNIIKS-DGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWD---CT  142 (347)
Q Consensus        67 V~~v~~~~~-~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~D---g~  142 (347)
                      ...|++.++ ..  +. |..+...+.|+.++..+++.          ..+.........++++++|+++++....   ..
T Consensus       141 P~gvavd~~s~~--g~-Lyv~D~~~~I~~id~~~g~v----------~~~~~~~~~P~giavd~dG~lyVad~~~~~~~~  207 (433)
T 4hw6_A          141 IWRMMFDPNSNY--DD-LYWVGQRDAFRHVDFVNQYV----------DIKTTNIGQCADVNFTLNGDMVVVDDQSSDTNT  207 (433)
T ss_dssp             CCEEEECTTTTT--CE-EEEECBTSCEEEEETTTTEE----------EEECCCCSCEEEEEECTTCCEEEEECCSCTTSE
T ss_pred             CceEEEccccCC--CE-EEEEeCCCCEEEEECCCCEE----------EEeecCCCCccEEEECCCCCEEEEcCCCCcccc
Confidence            456777763 11  12 33333337899998865532          2222334457899999999955554321   11


Q ss_pred             -EEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEe-CCCCeEE-EEecCCcEEEEECCCCce
Q 036314          143 -ISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW-PQQETIY-SASWDHSVRTWDVEMGKD  219 (347)
Q Consensus       143 -I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~l~-s~s~dg~v~vwd~~~~~~  219 (347)
                       +...+.... ..                    ....+..+.    ....+++ +.+..|+ +-..++.|..+|..++..
T Consensus       208 gv~~~~~~~~-~~--------------------~~~~~~~~~----~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~  262 (433)
T 4hw6_A          208 GIYLFTRASG-FT--------------------ERLSLCNAR----GAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTL  262 (433)
T ss_dssp             EEEEECGGGT-TC--------------------CEEEEEECS----SBCCCEECTTTCCEEECBTTCSEEEEECTTTCCE
T ss_pred             eEEEEECCCC-ee--------------------ccccccccC----CCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeE
Confidence             211211100 00                    000000111    1123444 3244444 444567899999876654


Q ss_pred             eeeeee-C--eeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCC-CCCeEEecCC---------------CCCeeEEEe
Q 036314          220 LSDIFC-G--KALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGT-SAPVFQFSSH---------------NSWISACKW  280 (347)
Q Consensus       220 ~~~~~~-~--~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~-~~~~~~~~~h---------------~~~v~~v~~  280 (347)
                      ...+.. .  .....+++++++..++++-...+.|+.+|...... ......+.+.               -..-..+++
T Consensus       263 ~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav  342 (433)
T 4hw6_A          263 TEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIF  342 (433)
T ss_dssp             EEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEE
T ss_pred             EEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEE
Confidence            222221 1  12235888777665667777788999988652111 1111222221               112455777


Q ss_pred             ---------CCCCCeEEEEEeCCCcEEEEEcCCCccceeecCC------------------CCeEEEEeec-C-CCEEEE
Q 036314          281 ---------HNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSH------------------KDKVLCADWW-R-GDSVIS  331 (347)
Q Consensus       281 ---------s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h------------------~~~v~~~~~~-~-~~~l~s  331 (347)
                               .+++ .+.++-.....|+.++.+ +. +.++.+.                  -....++++. + |..+++
T Consensus       343 ~~n~~y~~dd~~g-~lyvaD~~n~~I~~~~~~-G~-v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVa  419 (433)
T 4hw6_A          343 VKNEAYAGEEDEY-DFYFCDRDSHTVRVLTPE-GR-VTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIG  419 (433)
T ss_dssp             EECGGGTTSSCCE-EEEEEETTTTEEEEECTT-SE-EEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEE
T ss_pred             EccccccccCCCC-cEEEEECCCCEEEEECCC-CC-EEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEE
Confidence                     5554 445555667889999863 42 3333221                  1125677776 3 445555


Q ss_pred             ccCCceEEEee
Q 036314          332 GGVDSKLCVSS  342 (347)
Q Consensus       332 ~s~D~~v~vw~  342 (347)
                      =...+.|+..+
T Consensus       420 D~~n~rIr~i~  430 (433)
T 4hw6_A          420 DCDNHRVRKIA  430 (433)
T ss_dssp             EGGGTEEEEEE
T ss_pred             eCCCCEEEEEe
Confidence            55566666543

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=94.14  E-value=2.8  Score=38.40  Aligned_cols=152  Identities=12%  Similarity=0.052  Sum_probs=85.5

Q ss_pred             eEEEEeC--CCCeEEEEec-CCcEEEEECCCCceeeeeeeC----eeeEEEEe-------eCCCCcEEEEecCCC-----
Q 036314          189 VSSVVWP--QQETIYSASW-DHSVRTWDVEMGKDLSDIFCG----KALNCIDI-------GGEGSALIAAGGSDP-----  249 (347)
Q Consensus       189 v~~~~~~--~~~~l~s~s~-dg~v~vwd~~~~~~~~~~~~~----~~~~~~~~-------~~~~~~~la~~~~d~-----  249 (347)
                      ...+++.  ++..|+.+.. .+.|++.|++.+.........    ..+..+++       .+.+..++++...++     
T Consensus       141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~  220 (496)
T 3kya_A          141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDES  220 (496)
T ss_dssp             EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGE
T ss_pred             CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccC
Confidence            3456663  3455555544 367889998876543322221    13677888       776655666554442     


Q ss_pred             -cEEEEeCCCCCCCC--C-eEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcC-------CCcc-----------
Q 036314          250 -ILRIWDPRKPGTSA--P-VFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLR-------TAWP-----------  307 (347)
Q Consensus       250 -~i~iwd~~~~~~~~--~-~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~-------~~~~-----------  307 (347)
                       .|.+++....+...  . ...+.. ......++.+|++..++++-..++.|..+|++       ++..           
T Consensus       221 ~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~  299 (496)
T 3kya_A          221 PSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNT  299 (496)
T ss_dssp             EEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTT
T ss_pred             ceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccc
Confidence             36677643311211  1 122221 12334678899776767777788899999997       4443           


Q ss_pred             cee-ec-CCCCeEEEEeecC-CCE-EEEccCCceEEEe
Q 036314          308 LSV-ID-SHKDKVLCADWWR-GDS-VISGGVDSKLCVS  341 (347)
Q Consensus       308 ~~~-~~-~h~~~v~~~~~~~-~~~-l~s~s~D~~v~vw  341 (347)
                      ... +. +.....+.++|+| |++ +++-+....|+.+
T Consensus       300 ~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~ki  337 (496)
T 3kya_A          300 FKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRS  337 (496)
T ss_dssp             EEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             cceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEE
Confidence            112 11 2223457889975 663 5665667777763

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=93.80  E-value=2.4  Score=35.03  Aligned_cols=195  Identities=9%  Similarity=0.051  Sum_probs=107.4

Q ss_pred             eeccccceEEEEEeCCCCEEE-EeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccc--cCCccceEE
Q 036314          115 LRGHKASVHSIAAETSGNMVC-SGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTL--VGHTQCVSS  191 (347)
Q Consensus       115 ~~~h~~~V~~v~~s~~~~~l~-sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~  191 (347)
                      +.+=...+..++++|++..|+ ....++.|...|.. +..                         ++.+  .+. .....
T Consensus        22 l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v-------------------------~~~i~l~g~-~D~EG   74 (255)
T 3qqz_A           22 IAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDL-------------------------IRTIPLDFV-KDLET   74 (255)
T ss_dssp             CTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCE-------------------------EEEEECSSC-SSEEE
T ss_pred             CCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCE-------------------------EEEEecCCC-CChHH
Confidence            445456799999999876554 46777888877765 211                         1111  111 22345


Q ss_pred             EEeC-CCCeEEEEecCCcEEEEECCCCcee---eeee-------eCeeeEEEEeeCCCCcEEEEecCCC-cEEEEeCCCC
Q 036314          192 VVWP-QQETIYSASWDHSVRTWDVEMGKDL---SDIF-------CGKALNCIDIGGEGSALIAAGGSDP-ILRIWDPRKP  259 (347)
Q Consensus       192 ~~~~-~~~~l~s~s~dg~v~vwd~~~~~~~---~~~~-------~~~~~~~~~~~~~~~~~la~~~~d~-~i~iwd~~~~  259 (347)
                      +++. ++.++++.-.++.+.++++.....+   ....       .......+++.+.+..++++.-.+. .|.-|+-...
T Consensus        75 Ia~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~  154 (255)
T 3qqz_A           75 IEYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLS  154 (255)
T ss_dssp             EEECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTC
T ss_pred             eEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEccccc
Confidence            5553 4444444435567777776543321   1111       1224578899887666666554443 4555541111


Q ss_pred             CCCCCeEEe-------cCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceee--c-CCC------CeEEEEee
Q 036314          260 GTSAPVFQF-------SSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVI--D-SHK------DKVLCADW  323 (347)
Q Consensus       260 ~~~~~~~~~-------~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~--~-~h~------~~v~~~~~  323 (347)
                      ..  .+..+       ..+.....+++++|....+++....+..+..+|.+ ++.+..+  . +..      ..-=+++|
T Consensus       155 ~~--~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~  231 (255)
T 3qqz_A          155 SN--ELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAM  231 (255)
T ss_dssp             SS--CCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEE
T ss_pred             CC--ceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEE
Confidence            11  11111       11233468899999988888888888899999976 5554443  2 211      13457788


Q ss_pred             c-CCCEEEEccCCceEEE
Q 036314          324 W-RGDSVISGGVDSKLCV  340 (347)
Q Consensus       324 ~-~~~~l~s~s~D~~v~v  340 (347)
                      - +|+.+++ |.-+.+.+
T Consensus       232 d~~G~lyIv-sE~n~~y~  248 (255)
T 3qqz_A          232 DASGNIYIV-SEPNRFYR  248 (255)
T ss_dssp             CTTCCEEEE-ETTTEEEE
T ss_pred             CCCCCEEEE-cCCceEEE
Confidence            5 4665555 44444433

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=93.60  E-value=3.4  Score=35.98  Aligned_cols=109  Identities=10%  Similarity=-0.031  Sum_probs=56.8

Q ss_pred             ceeeccCCCCCEEEEEecCCeEEEEcCCCe-EEEEe---eccCCceEEEEEeecCCCceEEEEEccC---C----CcEEE
Q 036314           26 WVSAVDGSNPGFILTGCYDNLGRVWKAGGV-CTHIL---EGHCGAVSSVNIIKSDGLKYVTVATASK---D----QTLRL   94 (347)
Q Consensus        26 ~v~~~~~~~~~~l~sg~~d~~i~iw~~~~~-~~~~l---~~h~~~V~~v~~~~~~~~~~~~l~s~s~---D----g~v~~   94 (347)
                      ..+.+++.+++.|..+..++.|++++..+. .+..+   ..-......|+++|+-..++...++-+.   +    +.|..
T Consensus        30 ~P~~ia~~pdG~l~V~e~~g~I~~~d~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r  109 (354)
T 3a9g_A           30 VPWSIAPLGGGRYLVTERPGRLVLISPSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIR  109 (354)
T ss_dssp             CEEEEEEEETTEEEEEETTTEEEEECSSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEE
T ss_pred             CCeEEEEcCCCeEEEEeCCCEEEEEeCCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEE
Confidence            345666664444555567799999986665 11111   1123457889998852212233333332   3    56777


Q ss_pred             EeccccccccCcccccee-eeee---ccccceEEEEEeCCCCEEEEee
Q 036314           95 WKFDAEELVNHPKKIRSF-KILR---GHKASVHSIAAETSGNMVCSGS  138 (347)
Q Consensus        95 wd~~~~~~~~~~~~~~~~-~~~~---~h~~~V~~v~~s~~~~~l~sgs  138 (347)
                      |+.......  ....+.+ ..+.   .|.  ...++|.|||.+.++-+
T Consensus       110 ~~~~~~~~~--~~~~~~l~~~~~~~~~h~--~~~l~~~pDG~Lyvt~G  153 (354)
T 3a9g_A          110 GRLDGSTFK--LKEVKTLIDGIPGAYIHN--GGRIRFGPDGMLYITTG  153 (354)
T ss_dssp             EEECSSSCC--EEEEEEEEEEEECCSSCC--CCCEEECTTSCEEEECC
T ss_pred             EEECCCCcC--cCccEEEEEcCCCCCCcC--CceEEECCCCcEEEEEC
Confidence            776543100  0011111 1122   232  35689999998777654

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=93.58  E-value=3.9  Score=36.60  Aligned_cols=140  Identities=12%  Similarity=0.159  Sum_probs=85.0

Q ss_pred             CCCCeEEEEecCCcEEEEECCCCceeeeeeeC----e-eeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCC-CC-----
Q 036314          195 PQQETIYSASWDHSVRTWDVEMGKDLSDIFCG----K-ALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGT-SA-----  263 (347)
Q Consensus       195 ~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~-~~-----  263 (347)
                      .++..++.+ .++.||.-++.....-+.+...    . .+..+.+++. +.++|..+ +..|.+-.+..+.. ..     
T Consensus        30 ~n~t~i~~a-~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSps-G~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~  106 (452)
T 3pbp_A           30 QNGTRIVFI-QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTS-GDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQ  106 (452)
T ss_dssp             TTTTEEEEE-ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTT-SSEEEEEC-SSEEEEEECCTTCSCCCCHHHH
T ss_pred             cCCCEEEEE-ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCC-CCEEEEec-CCeEEEEEecCccccCcccccc
Confidence            566666554 5688998888754433333332    1 3455667554 56776654 56888888752210 10     


Q ss_pred             ---CeEEecC------CCCCeeEEEeCCCCCe--EEEEEeCCCcEEEEEcCCC--ccceeec---------CCCCeEEEE
Q 036314          264 ---PVFQFSS------HNSWISACKWHNKSWF--HLISASYDGKVMLWDLRTA--WPLSVID---------SHKDKVLCA  321 (347)
Q Consensus       264 ---~~~~~~~------h~~~v~~v~~s~~~~~--~l~s~s~D~~i~lwd~~~~--~~~~~~~---------~h~~~v~~~  321 (347)
                         ..+.+.-      ....|..+.|+|-+..  .|++-..|++||+||+...  ++. .+.         .+...|.++
T Consensus       107 ~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~  185 (452)
T 3pbp_A          107 DAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDL  185 (452)
T ss_dssp             HTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEE
T ss_pred             cccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEE
Confidence               1112221      2467999999997643  6999999999999999863  222 221         233567888


Q ss_pred             eecCCC---EEEEccCCceE
Q 036314          322 DWWRGD---SVISGGVDSKL  338 (347)
Q Consensus       322 ~~~~~~---~l~s~s~D~~v  338 (347)
                      +|..|.   ++++.+.+|-|
T Consensus       186 ~Fg~~~lTLYvl~~t~~GDI  205 (452)
T 3pbp_A          186 EFSKDGLTLYCLNTTEGGDI  205 (452)
T ss_dssp             EECTTSSCEEEEECTTSCEE
T ss_pred             EEcCCCcEEEEEecCCCCCE
Confidence            997544   35555566655

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=93.35  E-value=3.2  Score=35.01  Aligned_cols=103  Identities=17%  Similarity=0.120  Sum_probs=49.4

Q ss_pred             CCCeEEEEecC-----CcEEEEECCCCceeee--eeeCe-eeEEEEeeCCCCcEEEEecCC-----CcEEEEeCCCCCCC
Q 036314          196 QQETIYSASWD-----HSVRTWDVEMGKDLSD--IFCGK-ALNCIDIGGEGSALIAAGGSD-----PILRIWDPRKPGTS  262 (347)
Q Consensus       196 ~~~~l~s~s~d-----g~v~vwd~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~la~~~~d-----~~i~iwd~~~~~~~  262 (347)
                      ++..++.|+.+     ..+.+||+.+.+....  +.... ...++.+   ++.+++.|+.+     ..+.+||+... ..
T Consensus       168 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~v~~yd~~~~-~W  243 (308)
T 1zgk_A          168 NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL---HNCIYAAGGYDGQDQLNSVERYDVETE-TW  243 (308)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE---TTEEEEECCBCSSSBCCCEEEEETTTT-EE
T ss_pred             CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE---CCEEEEEeCCCCCCccceEEEEeCCCC-cE
Confidence            44555666554     3588899877653321  11111 1122222   34577777654     56889998642 11


Q ss_pred             CCeEEecCCCCCeeEEEeCCCCCeEEEEEeCC-----CcEEEEEcCCC
Q 036314          263 APVFQFSSHNSWISACKWHNKSWFHLISASYD-----GKVMLWDLRTA  305 (347)
Q Consensus       263 ~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D-----~~i~lwd~~~~  305 (347)
                      ..+..+.........+.+  ++ .+++.|+.+     ..+.+||+++.
T Consensus       244 ~~~~~~p~~r~~~~~~~~--~~-~i~v~GG~~~~~~~~~v~~yd~~~~  288 (308)
T 1zgk_A          244 TFVAPMKHRRSALGITVH--QG-RIYVLGGYDGHTFLDSVECYDPDTD  288 (308)
T ss_dssp             EECCCCSSCCBSCEEEEE--TT-EEEEECCBCSSCBCCEEEEEETTTT
T ss_pred             EECCCCCCCccceEEEEE--CC-EEEEEcCcCCCcccceEEEEcCCCC
Confidence            111111111112222333  23 456666643     34677777654

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=92.41  E-value=4.3  Score=33.97  Aligned_cols=103  Identities=15%  Similarity=0.215  Sum_probs=50.7

Q ss_pred             CCCeEEEEecCC-----cEEEEECCCCceeee--eeeCee-eEEEEeeCCCCcEEEEecCC-----CcEEEEeCCCCCCC
Q 036314          196 QQETIYSASWDH-----SVRTWDVEMGKDLSD--IFCGKA-LNCIDIGGEGSALIAAGGSD-----PILRIWDPRKPGTS  262 (347)
Q Consensus       196 ~~~~l~s~s~dg-----~v~vwd~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~la~~~~d-----~~i~iwd~~~~~~~  262 (347)
                      ++..++.|+.++     .+.+||+.+.+....  +..... ..+..+   ++.+++.|+.+     ..+..||+... ..
T Consensus       112 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~d~~~~-~W  187 (301)
T 2vpj_A          112 GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA---SGVIYCLGGYDGLNILNSVEKYDPHTG-HW  187 (301)
T ss_dssp             TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE---TTEEEEECCBCSSCBCCCEEEEETTTT-EE
T ss_pred             CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE---CCEEEEECCCCCCcccceEEEEeCCCC-cE
Confidence            445555555443     578899877654321  111111 112222   34577777654     56888987642 11


Q ss_pred             CCeEEecCCCCCeeEEEeCCCCCeEEEEEeCC-----CcEEEEEcCCC
Q 036314          263 APVFQFSSHNSWISACKWHNKSWFHLISASYD-----GKVMLWDLRTA  305 (347)
Q Consensus       263 ~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D-----~~i~lwd~~~~  305 (347)
                      ..+..+.........+.+  ++ .+++.|+.+     ..+.+||+++.
T Consensus       188 ~~~~~~p~~r~~~~~~~~--~~-~i~v~GG~~~~~~~~~v~~yd~~~~  232 (301)
T 2vpj_A          188 TNVTPMATKRSGAGVALL--ND-HIYVVGGFDGTAHLSSVEAYNIRTD  232 (301)
T ss_dssp             EEECCCSSCCBSCEEEEE--TT-EEEEECCBCSSSBCCCEEEEETTTT
T ss_pred             EeCCCCCcccccceEEEE--CC-EEEEEeCCCCCcccceEEEEeCCCC
Confidence            111111111112223333  23 456667654     46889999865

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=92.23  E-value=4.3  Score=33.55  Aligned_cols=212  Identities=11%  Similarity=0.071  Sum_probs=121.5

Q ss_pred             EEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEe
Q 036314           58 HILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSG  137 (347)
Q Consensus        58 ~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sg  137 (347)
                      +.+.+-.+.+..+++.|+++   ...+....++.|...|.+ ++.+.      .+ .+.+. ...-.+++.+++.++++.
T Consensus        20 ~~l~g~~~~lSGla~~~~~~---~L~aV~d~~~~I~~ld~~-g~v~~------~i-~l~g~-~D~EGIa~~~~g~~~vs~   87 (255)
T 3qqz_A           20 KEIAGITNNISSLTWSAQSN---TLFSTINKPAAIVEMTTN-GDLIR------TI-PLDFV-KDLETIEYIGDNQFVISD   87 (255)
T ss_dssp             EECTTCCSCEEEEEEETTTT---EEEEEEETTEEEEEEETT-CCEEE------EE-ECSSC-SSEEEEEECSTTEEEEEE
T ss_pred             eECCCcccCcceeEEeCCCC---EEEEEECCCCeEEEEeCC-CCEEE------EE-ecCCC-CChHHeEEeCCCEEEEEE
Confidence            35666667899999998543   344446667778877876 43211      11 12332 335678888888877776


Q ss_pred             eCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEe-CCCCeEEEEecCCcEEEEECCC
Q 036314          138 SWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEM  216 (347)
Q Consensus       138 s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~l~s~s~dg~v~vwd~~~  216 (347)
                      -.++.+.++++......   ........            .+.. ...+....+++| +.++.|+.+.......+|.+..
T Consensus        88 E~~~~l~~~~v~~~~~i---~~~~~~~~------------~~~~-~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g  151 (255)
T 3qqz_A           88 ERDYAIYVISLTPNSEV---KILKKIKI------------PLQE-SPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNG  151 (255)
T ss_dssp             TTTTEEEEEEECTTCCE---EEEEEEEC------------CCSS-CCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEES
T ss_pred             CCCCcEEEEEcCCCCee---eeeeeecc------------cccc-ccccCCcceEEEeCCCCEEEEEECcCCceEEEEcc
Confidence            67788999887653210   00000000            0000 112344678888 5666777777766666666541


Q ss_pred             ---Cceeeeee--------eCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCC-------CCCeeEE
Q 036314          217 ---GKDLSDIF--------CGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSH-------NSWISAC  278 (347)
Q Consensus       217 ---~~~~~~~~--------~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h-------~~~v~~v  278 (347)
                         ...+..+.        .-..+..++++|..+++++....+..+..+|...  .......+...       ...-..|
T Consensus       152 ~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g--~~~~~~~L~~g~~~l~~~~~qpEGi  229 (255)
T 3qqz_A          152 LLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVG--EVIGEMSLTKGSRGLSHNIKQAEGV  229 (255)
T ss_dssp             TTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTC--CEEEEEECSTTGGGCSSCCCSEEEE
T ss_pred             cccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCC--CEEEEEEcCCccCCcccccCCCCee
Confidence               11111111        1124577888888888888888899999999753  22223333321       1134678


Q ss_pred             EeCCCCCeEEEEEeCCCcEEEEE
Q 036314          279 KWHNKSWFHLISASYDGKVMLWD  301 (347)
Q Consensus       279 ~~s~~~~~~l~s~s~D~~i~lwd  301 (347)
                      +|.++|. +.+ .|+-..+.++.
T Consensus       230 a~d~~G~-lyI-vsE~n~~y~f~  250 (255)
T 3qqz_A          230 AMDASGN-IYI-VSEPNRFYRFT  250 (255)
T ss_dssp             EECTTCC-EEE-EETTTEEEEEE
T ss_pred             EECCCCC-EEE-EcCCceEEEEE
Confidence            9999985 333 36655554443

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=91.59  E-value=6.1  Score=34.00  Aligned_cols=152  Identities=14%  Similarity=0.144  Sum_probs=84.2

Q ss_pred             CCEEEEEecCCeEEEEcCC-CeEEEE-eec----cCC--ceEEEEE---eecCCCceEEEEEcc-------------CCC
Q 036314           35 PGFILTGCYDNLGRVWKAG-GVCTHI-LEG----HCG--AVSSVNI---IKSDGLKYVTVATAS-------------KDQ   90 (347)
Q Consensus        35 ~~~l~sg~~d~~i~iw~~~-~~~~~~-l~~----h~~--~V~~v~~---~~~~~~~~~~l~s~s-------------~Dg   90 (347)
                      +.++++.-+.++|..|++. +..... +.+    ...  .+..|.+   .+.    +..+++..             .+.
T Consensus        25 g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~----grL~vv~~~~~af~~~g~~~~g~~  100 (334)
T 2p9w_A           25 QVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNS----KRLFAVMKNAKSFNFADQSSHGAS  100 (334)
T ss_dssp             TEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSC----CEEEEEEEETTTTCTTSCCSSSCC
T ss_pred             CEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCC----CcEEEEEcccccccccccccCCCC
Confidence            3345555589999999986 433222 332    111  3467777   353    23444322             267


Q ss_pred             cEEEEecc---ccccccCccccceeeeeeccc-----------cceEEEEEeCCCCEEEEeeCC-CcEEEEecCCCCCCC
Q 036314           91 TLRLWKFD---AEELVNHPKKIRSFKILRGHK-----------ASVHSIAAETSGNMVCSGSWD-CTISLWRTNDSDAAG  155 (347)
Q Consensus        91 ~v~~wd~~---~~~~~~~~~~~~~~~~~~~h~-----------~~V~~v~~s~~~~~l~sgs~D-g~I~iwd~~~~~~~~  155 (347)
                      .|..+|+.   +++.+.       ...|.+..           .....++..++|+.-++++.- +.|...+....    
T Consensus       101 ~v~~~Dl~~~~tg~~~~-------~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~----  169 (334)
T 2p9w_A          101 SFHSFNLPLSENSKPVW-------SVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK----  169 (334)
T ss_dssp             EEEEEESSCCTTCCCSE-------EEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC----
T ss_pred             EEEEEcCCcCCCCCEEE-------EecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC----
Confidence            79999988   554321       11111111           247889999999999988887 77665553321    


Q ss_pred             ccceeeeccCCCccccccccccccccccCCccceEEEEe-CCCCeEEEEecCCcEEEEECCCC
Q 036314          156 NQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMG  217 (347)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~l~s~s~dg~v~vwd~~~~  217 (347)
                       ..........               ........+.+++ |++..|+....+|.|..+|++..
T Consensus       170 -~~~~~~~~~~---------------~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~p  216 (334)
T 2p9w_A          170 -TVSTFAWESG---------------NGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKP  216 (334)
T ss_dssp             -CEEEEEECCC---------------CSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSS
T ss_pred             -EEeeeeecCC---------------CcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCC
Confidence             0110000000               0001112345665 67888777766999999998854

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=91.50  E-value=6.5  Score=34.12  Aligned_cols=51  Identities=6%  Similarity=0.049  Sum_probs=28.9

Q ss_pred             CcEEEEecCCCcEEEEeCCCCCCCCCeEE-ecCCCCCeeEEEeCCCCCeEEEE
Q 036314          239 SALIAAGGSDPILRIWDPRKPGTSAPVFQ-FSSHNSWISACKWHNKSWFHLIS  290 (347)
Q Consensus       239 ~~~la~~~~d~~i~iwd~~~~~~~~~~~~-~~~h~~~v~~v~~s~~~~~~l~s  290 (347)
                      +.++++....+.|...++... ....... +..-...+..+++.|+|..++++
T Consensus       289 g~l~v~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~t  340 (353)
T 2g8s_A          289 QKLFIGALKDKDVIVMSVNGD-KVTEDGRILTDRGQRIRDVRTGPDGYLYVLT  340 (353)
T ss_dssp             TEEEEEETTTTEEEEEEEETT-EEEEEEEESGGGCCCEEEEEECTTSCEEEEE
T ss_pred             CcEEEEEccCCEEEEEEeCCC-eEeeeEEcccCCCCceeEEEECCCCcEEEEE
Confidence            456666666777877776531 1111112 22223468889999998643333

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=91.47  E-value=7.6  Score=34.91  Aligned_cols=115  Identities=17%  Similarity=0.220  Sum_probs=74.7

Q ss_pred             CCCCeEEEEecCCcEEEEECCCCceeeeeeeCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCC-
Q 036314          195 PQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNS-  273 (347)
Q Consensus       195 ~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~-  273 (347)
                      |..+.|+-- ...++.++|+++...++.....+.+.--.|-.+.  .++--+ +..|+-|++...  ..|.+.+..|.+ 
T Consensus        75 P~~~iiALr-ag~~lQiFnle~K~klks~~~~e~VvfWkWis~~--~l~lVT-~taVyHWsi~~~--s~P~kvFdR~~~L  148 (494)
T 1bpo_A           75 PASKVIALK-AGKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLN--TVALVT-DNAVYHWSMEGE--SQPVKMFDRHSSL  148 (494)
T ss_dssp             SSSSCEEEE-ETTEEEEEETTTTEEEEEEECSSCCCEEEEEETT--EEEEEC-SSEEEEEESSSS--CCCEEEEECCGGG
T ss_pred             CCCcEEEEe-cCCeEEEEchHHhhhhcceecCCCceEEEecCCC--eEEEEc-CCeeEEecccCC--CCchhheecchhc
Confidence            444444443 3789999999998888777655554333333332  444333 578999998753  345666666654 


Q ss_pred             ---CeeEEEeCCCCCeEEEEEe------CCCcEEEEEcCCCccceeecCCCC
Q 036314          274 ---WISACKWHNKSWFHLISAS------YDGKVMLWDLRTAWPLSVIDSHKD  316 (347)
Q Consensus       274 ---~v~~v~~s~~~~~~l~s~s------~D~~i~lwd~~~~~~~~~~~~h~~  316 (347)
                         .|-.-..+++..+++++|=      -.|.+.||..+.+ .-+.++||.+
T Consensus       149 ~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa  199 (494)
T 1bpo_A          149 AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAA  199 (494)
T ss_dssp             TTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-CEEEECCSEE
T ss_pred             ccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-ccchheeeee
Confidence               4666777888888777664      2477999999864 3455677753

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=91.10  E-value=7.2  Score=33.95  Aligned_cols=74  Identities=12%  Similarity=0.164  Sum_probs=45.2

Q ss_pred             eeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCC-CCCeEEEEEeCC-CcEEEEEcC
Q 036314          228 ALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHN-KSWFHLISASYD-GKVMLWDLR  303 (347)
Q Consensus       228 ~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~-~~~~~l~s~s~D-~~i~lwd~~  303 (347)
                      ..+.++++|++..+.++-+..+.|..||+...+.......+ ........++..+ +|. +.+++..+ +.|..|+.+
T Consensus       222 ~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~-lwva~~~~g~~v~~~~P~  297 (355)
T 3sre_A          222 FANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGD-LWVGCHPNGMRIFFYDAE  297 (355)
T ss_dssp             SEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCC-EEEEEESCHHHHHSCCTT
T ss_pred             ccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCc-EEEEecCCceEEEEECCC
Confidence            45788998877777777777899999998643322222233 2234566788888 474 34444444 345555554

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=90.67  E-value=16  Score=37.31  Aligned_cols=72  Identities=17%  Similarity=0.152  Sum_probs=46.3

Q ss_pred             CCceeeccCCC-------CCEEEEEec-CCeEEEEcCCCe-E--EEEeeccCCceEEEEEeecCCCceEEEEEccCCCcE
Q 036314           24 DDWVSAVDGSN-------PGFILTGCY-DNLGRVWKAGGV-C--THILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTL   92 (347)
Q Consensus        24 ~~~v~~~~~~~-------~~~l~sg~~-d~~i~iw~~~~~-~--~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v   92 (347)
                      ...|+|+++.+       ..++|.|.+ |++++|+.+... .  ...+.+ +....++.+....  ...+|..|-.||.+
T Consensus       553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~-~~~p~si~l~~~~--~~~~L~igl~dG~l  629 (1158)
T 3ei3_A          553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGG-EIIPRSILMTTFE--SSHYLLCALGDGAL  629 (1158)
T ss_dssp             SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCS-SCCEEEEEEEEET--TEEEEEEEETTSEE
T ss_pred             CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCC-CCCCcEEEEEEeC--CCcEEEEEeCCCeE
Confidence            45688888652       358999998 999999987642 2  222322 1234455544322  22468889999998


Q ss_pred             EEEecc
Q 036314           93 RLWKFD   98 (347)
Q Consensus        93 ~~wd~~   98 (347)
                      ..+.++
T Consensus       630 ~~~~~d  635 (1158)
T 3ei3_A          630 FYFGLN  635 (1158)
T ss_dssp             EEEEEC
T ss_pred             EEEEEc
Confidence            777665

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=90.64  E-value=7.6  Score=33.39  Aligned_cols=20  Identities=5%  Similarity=-0.235  Sum_probs=13.6

Q ss_pred             CCCEEEEEecC-CeEEEEcCC
Q 036314           34 NPGFILTGCYD-NLGRVWKAG   53 (347)
Q Consensus        34 ~~~~l~sg~~d-~~i~iw~~~   53 (347)
                      ++.+++.||.+ ..+.++|..
T Consensus        19 ~~~iyv~GG~~~~~~~~~d~~   39 (357)
T 2uvk_A           19 NDTVYIGLGSAGTAWYKLDTQ   39 (357)
T ss_dssp             TTEEEEECGGGTTCEEEEETT
T ss_pred             CCEEEEEeCcCCCeEEEEccc
Confidence            55677777765 467777864

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=90.58  E-value=6.8  Score=32.75  Aligned_cols=104  Identities=14%  Similarity=0.178  Sum_probs=50.0

Q ss_pred             CCCeEEEEecCC-----cEEEEECCCCceeee--eeeCeeeEEEEeeCCCCcEEEEecCC-------CcEEEEeCCCCCC
Q 036314          196 QQETIYSASWDH-----SVRTWDVEMGKDLSD--IFCGKALNCIDIGGEGSALIAAGGSD-------PILRIWDPRKPGT  261 (347)
Q Consensus       196 ~~~~l~s~s~dg-----~v~vwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~la~~~~d-------~~i~iwd~~~~~~  261 (347)
                      ++..++.|+.++     .+.+||+.+.+....  +.......+...  .++.+++.|+.+       ..+..||+... .
T Consensus       108 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~-~  184 (302)
T 2xn4_A          108 NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGV--VGGLLYAVGGYDVASRQCLSTVECYNATTN-E  184 (302)
T ss_dssp             TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCEETTTTEECCCEEEEETTTT-E
T ss_pred             CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEE--ECCEEEEEeCCCCCCCccccEEEEEeCCCC-c
Confidence            445556666553     477889877654321  111111111222  134566776642       45888998642 1


Q ss_pred             CCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCC-----CcEEEEEcCCC
Q 036314          262 SAPVFQFSSHNSWISACKWHNKSWFHLISASYD-----GKVMLWDLRTA  305 (347)
Q Consensus       262 ~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D-----~~i~lwd~~~~  305 (347)
                      ...+..+.........+.+  ++ .+++.|+.+     ..+.+||+++.
T Consensus       185 W~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~yd~~~~  230 (302)
T 2xn4_A          185 WTYIAEMSTRRSGAGVGVL--NN-LLYAVGGHDGPLVRKSVEVYDPTTN  230 (302)
T ss_dssp             EEEECCCSSCCBSCEEEEE--TT-EEEEECCBSSSSBCCCEEEEETTTT
T ss_pred             EEECCCCccccccccEEEE--CC-EEEEECCCCCCcccceEEEEeCCCC
Confidence            1111111111112223333  33 456666654     36889998764

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=90.41  E-value=7.1  Score=32.70  Aligned_cols=60  Identities=10%  Similarity=0.206  Sum_probs=31.4

Q ss_pred             CCCeEEEEecC-----CcEEEEECCCCceeee--eeeCe-eeEEEEeeCCCCcEEEEecCC-----CcEEEEeCCC
Q 036314          196 QQETIYSASWD-----HSVRTWDVEMGKDLSD--IFCGK-ALNCIDIGGEGSALIAAGGSD-----PILRIWDPRK  258 (347)
Q Consensus       196 ~~~~l~s~s~d-----g~v~vwd~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~la~~~~d-----~~i~iwd~~~  258 (347)
                      ++..++.|+.+     ..+.+||+.+.+....  +.... ...+..+   ++.+++.|+.+     +.+.+||+..
T Consensus       200 ~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~i~v~GG~~~~~~~~~~~~yd~~~  272 (306)
T 3ii7_A          200 KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV---GSIVYVLAGFQGVGRLGHILEYNTET  272 (306)
T ss_dssp             TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE---TTEEEEEECBCSSSBCCEEEEEETTT
T ss_pred             CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE---CCEEEEEeCcCCCeeeeeEEEEcCCC
Confidence            44555555543     3578899887653221  11111 1122222   34567777643     5677788754

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=87.97  E-value=11  Score=31.61  Aligned_cols=24  Identities=25%  Similarity=0.314  Sum_probs=15.8

Q ss_pred             CCCeEEEEecC-----CcEEEEECCCCce
Q 036314          196 QQETIYSASWD-----HSVRTWDVEMGKD  219 (347)
Q Consensus       196 ~~~~l~s~s~d-----g~v~vwd~~~~~~  219 (347)
                      ++..++.|+.+     ..+.+||+.+.+.
T Consensus       215 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W  243 (308)
T 1zgk_A          215 HNCIYAAGGYDGQDQLNSVERYDVETETW  243 (308)
T ss_dssp             TTEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred             CCEEEEEeCCCCCCccceEEEEeCCCCcE
Confidence            44555666654     4588999887654

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=87.00  E-value=2.7  Score=37.58  Aligned_cols=119  Identities=11%  Similarity=-0.032  Sum_probs=69.3

Q ss_pred             ceeeccCC-CCCEEEEEecCCeEEEEcCC-C------------eEEEEee-c-----cCCceEEEEEeecCCCceEEEEE
Q 036314           26 WVSAVDGS-NPGFILTGCYDNLGRVWKAG-G------------VCTHILE-G-----HCGAVSSVNIIKSDGLKYVTVAT   85 (347)
Q Consensus        26 ~v~~~~~~-~~~~l~sg~~d~~i~iw~~~-~------------~~~~~l~-~-----h~~~V~~v~~~~~~~~~~~~l~s   85 (347)
                      .|..+-.+ +|.+||-.| +.+|.|=.++ +            ...+.+. +     ...+|..+.|+|-+.. +..|++
T Consensus        67 ~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~-ds~LVV  144 (452)
T 3pbp_A           67 DTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYR-DSCIVV  144 (452)
T ss_dssp             TTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGG-GCEEEE
T ss_pred             ceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCC-CCeEEE
Confidence            35556666 456777665 4566775542 1            1122322 1     2467999999996543 346778


Q ss_pred             ccCCCcEEEEeccccccccC-ccccceeeeeeccccceEEEEEeCCCCEEEEe--eCCCcEEEE
Q 036314           86 ASKDQTLRLWKFDAEELVNH-PKKIRSFKILRGHKASVHSIAAETSGNMVCSG--SWDCTISLW  146 (347)
Q Consensus        86 ~s~Dg~v~~wd~~~~~~~~~-~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sg--s~Dg~I~iw  146 (347)
                      =..|++||+||+....-.+. .++......+..+...|.+++|.+++-.|+..  +..|.|.-.
T Consensus       145 LtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          145 LKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             EETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred             EecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence            88999999999975321000 00000011122344678899999988766654  477777543

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=85.05  E-value=17  Score=31.04  Aligned_cols=48  Identities=8%  Similarity=-0.095  Sum_probs=24.5

Q ss_pred             CcEEEEECCCCceeee--eeeCeee-EEEEeeCCCCcEEEEecC------CCcEEEEeC
Q 036314          207 HSVRTWDVEMGKDLSD--IFCGKAL-NCIDIGGEGSALIAAGGS------DPILRIWDP  256 (347)
Q Consensus       207 g~v~vwd~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~la~~~~------d~~i~iwd~  256 (347)
                      ..+.+||..+.+....  +...... .++..  .++.+++.|+.      ...+..||+
T Consensus       168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~--~~~~iyv~GG~~~~~~~~~~v~~~d~  224 (357)
T 2uvk_A          168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVN--KGDKTWLINGEAKPGLRTDAVFELDF  224 (357)
T ss_dssp             CEEEEEETTTTEEEEEEECSSCCCBSCEEEE--ETTEEEEECCEEETTEECCCEEEEEC
T ss_pred             ccEEEEeCCCCcEEECCCCCCCCcccccEEE--ECCEEEEEeeecCCCcccCceEEEEe
Confidence            4688899887654322  1111111 12222  13456667664      345777876

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=83.63  E-value=19  Score=30.25  Aligned_cols=60  Identities=7%  Similarity=0.014  Sum_probs=31.9

Q ss_pred             CCCeEEEEec-C-----CcEEEEECCCCceeee--eeeCee-eEEEEeeCCCCcEEEEecCCC-----cEEEEeCCC
Q 036314          196 QQETIYSASW-D-----HSVRTWDVEMGKDLSD--IFCGKA-LNCIDIGGEGSALIAAGGSDP-----ILRIWDPRK  258 (347)
Q Consensus       196 ~~~~l~s~s~-d-----g~v~vwd~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~la~~~~d~-----~i~iwd~~~  258 (347)
                      ++..++.|+. +     ..+.+||+.+.+....  +..... ..+..+   ++.+++.|+.++     .+.+||+..
T Consensus       148 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~  221 (315)
T 4asc_A          148 MDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH---DGRIIVAAGVTDTGLTSSAEVYSITD  221 (315)
T ss_dssp             TTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE---TTEEEEEEEECSSSEEEEEEEEETTT
T ss_pred             CCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEE---CCEEEEEeccCCCCccceEEEEECCC
Confidence            4455556655 2     3588899887643221  111111 122222   345777776544     578888864

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=83.08  E-value=23  Score=30.81  Aligned_cols=91  Identities=14%  Similarity=0.149  Sum_probs=48.3

Q ss_pred             cCCeEEEEcCC---CeEE-EEeec-----cCCceEEEEEeecCCCceEEEEEcc--CCCcEEEEeccccccccCccccce
Q 036314           43 YDNLGRVWKAG---GVCT-HILEG-----HCGAVSSVNIIKSDGLKYVTVATAS--KDQTLRLWKFDAEELVNHPKKIRS  111 (347)
Q Consensus        43 ~d~~i~iw~~~---~~~~-~~l~~-----h~~~V~~v~~~~~~~~~~~~l~s~s--~Dg~v~~wd~~~~~~~~~~~~~~~  111 (347)
                      .+|.|.++|..   +... -.+.+     .......+.+.++.......+++-.  .+.+|.+|+++.+.-     ....
T Consensus        81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~-----~~~~  155 (355)
T 3sre_A           81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEK-----SLLH  155 (355)
T ss_dssp             -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTT-----EEEE
T ss_pred             CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCC-----EEEE
Confidence            68889999874   2221 12322     2234567777664211223333322  257899998864321     1122


Q ss_pred             eeeeecc-ccceEEEEEeCCCCEEEEee
Q 036314          112 FKILRGH-KASVHSIAAETSGNMVCSGS  138 (347)
Q Consensus       112 ~~~~~~h-~~~V~~v~~s~~~~~l~sgs  138 (347)
                      +..+.+. -...+.+++.++|.+.++..
T Consensus       156 ~~~~~g~~~~~pND~~v~~~G~fyvt~~  183 (355)
T 3sre_A          156 LKTIRHKLLPSVNDIVAVGPEHFYATND  183 (355)
T ss_dssp             EEEECCTTCSSEEEEEEEETTEEEEEES
T ss_pred             EeccccCCCCCCceEEEeCCCCEEecCC
Confidence            2333332 23468899999998777653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	347
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	4e-18
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	9e-15
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	4e-10
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	9e-05
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	1e-13
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	1e-06
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	1e-13
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	1e-11
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-13
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	7e-13
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-09
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	5e-13
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-12
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-11
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-09
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	4e-08
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-08
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	9e-07
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-05
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	1e-07
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	3e-07
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	5e-05
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	0.002
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	0.003
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-07
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-07
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	5e-06
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-05
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	0.002
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	3e-07
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	6e-07
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-04
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	4e-04
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	2e-06
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	3e-06
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	5e-05
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	1e-05
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	1e-05
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	4e-04
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	6e-04
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	9e-05
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	3e-04
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	2e-04
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	3e-04
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	6e-04
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	0.003
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.003

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 81.7 bits (200), Expect = 4e-18
 Identities = 49/321 (15%), Positives = 102/321 (31%), Gaps = 41/321 (12%)

Query: 14  PQKEEEPSL--HDDWVSAVDGSNPG-FILTGCYDNLGRVWKAG-GVCTHILEGHCGAVSS 69
           P+  E+ +L  H   V+ V        +++   D   +VW    G     L+GH  +V  
Sbjct: 5   PRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQD 64

Query: 70  V-----------------------------NIIKSDGLKYVTVATASKDQTLRLWKFDAE 100
           +                               +        +V+       +     D  
Sbjct: 65  ISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKT 124

Query: 101 ELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSI 160
             +   +     K   GH+  V  +     G ++ S S D T+ +W     +        
Sbjct: 125 IKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREH 184

Query: 161 KKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWPQQETIYSASWDHSVRTWDVEMGKDL 220
           +                + S++   T   +         + S S D +++ WDV  G  L
Sbjct: 185 RHVVECISWAPES----SYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCL 240

Query: 221 SDIFCGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKW 280
             +          +   G   I +   D  LR+WD +       +   ++H  ++++  +
Sbjct: 241 MTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYK---NKRCMKTLNAHEHFVTSLDF 297

Query: 281 HNKSWFHLISASYDGKVMLWD 301
           H  +  ++++ S D  V +W+
Sbjct: 298 HKTAP-YVVTGSVDQTVKVWE 317

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.2 bits (175), Expect = 9e-15
 Identities = 64/322 (19%), Positives = 112/322 (34%), Gaps = 24/322 (7%)

Query: 23  HDDWVSAVDGSNPGFILTGCYDNLGRVWKA-GGVCTHILEGHCGAVSSV----NIIKSDG 77
           HDD V          I++G  DN  +VW A  G C   L GH G V S     NII S  
Sbjct: 15  HDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGS 74

Query: 78  LKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSG 137
                    ++        +     V          +     A++     ET   +    
Sbjct: 75  TDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLM 134

Query: 138 SWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWPQQ 197
                +   + +             +  + + E        + TL GHT      +    
Sbjct: 135 GHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETC------LHTLQGHT-NRVYSLQFDG 187

Query: 198 ETIYSASWDHSVRTWDVEMGKDLSDIFCGKAL-NCIDIGGEGSALIAAGGSDPILRIWDP 256
             + S S D S+R WDVE G  +  +   ++L + +++      ++ +G +D  ++IWD 
Sbjct: 188 IHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDN---ILVSGNADSTVKIWDI 244

Query: 257 RKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVI----- 311
           +       +   + H S ++  +++       I++S DG V LWDL+T   +  +     
Sbjct: 245 KTGQCLQTLQGPNKHQSAVTCLQFNKNFV---ITSSDDGTVKLWDLKTGEFIRNLVTLES 301

Query: 312 DSHKDKVLCADWWRGDSVISGG 333
                 V          V + G
Sbjct: 302 GGSGGVVWRIRASNTKLVCAVG 323

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.9 bits (138), Expect = 4e-10
 Identities = 53/307 (17%), Positives = 104/307 (33%), Gaps = 39/307 (12%)

Query: 50  WKAGGV-CTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKK 108
           W+ G +    +L+GH   V +   ++  G     + + S D TL++W     + +     
Sbjct: 1   WRRGELKSPKVLKGHDDHVITC--LQFCGN---RIVSGSDDNTLKVWSAVTGKCL----- 50

Query: 109 IRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQ 168
               + L GH   V S     +  +  S      +    T +        +   R  +  
Sbjct: 51  ----RTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH 106

Query: 169 VEEPQL-------------EGEAISTLVGHTQCVSSVVWPQQETIYSASWDHSVRTWDVE 215
            +                  G+ +  L+GH   V  V +  +  +   ++D  V+ WD E
Sbjct: 107 EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSG-AYDFMVKVWDPE 165

Query: 216 MGKDLSDIFCGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWI 275
               L     G       +  +G   + +G  D  +R+WD         +   + H S  
Sbjct: 166 TETCLH-TLQGHTNRVYSLQFDGI-HVVSGSLDTSIRVWDVETG---NCIHTLTGHQSLT 220

Query: 276 SACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKVLCADW--WRGDSVISGG 333
           S  +  +     L+S + D  V +WD++T   L  +              +  + VI+  
Sbjct: 221 SGMELKDN---ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSS 277

Query: 334 VDSKLCV 340
            D  + +
Sbjct: 278 DDGTVKL 284

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.3 bits (95), Expect = 9e-05
 Identities = 22/122 (18%), Positives = 40/122 (32%), Gaps = 7/122 (5%)

Query: 23  HDDWVSAVDGSNPGFILTGCYDNLGRVWKAGGVCTHILEGHCGAVSSVNIIKSDGLKYVT 82
           H    S ++      +++G  D+  ++W                  S          +V 
Sbjct: 216 HQSLTSGME-LKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFV- 273

Query: 83  VATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCT 142
             T+S D T++LW     E + +   + S     G    V  I A  +  +   GS + T
Sbjct: 274 -ITSSDDGTVKLWDLKTGEFIRNLVTLES----GGSGGVVWRIRASNTKLVCAVGSRNGT 328

Query: 143 IS 144
             
Sbjct: 329 EE 330

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 69.1 bits (167), Expect = 1e-13
 Identities = 52/354 (14%), Positives = 119/354 (33%), Gaps = 49/354 (13%)

Query: 23  HDDWVSAVDGSNPGFILTGCYDNLGRVW----------KAGGVCTHILEGHCGAVSSVNI 72
           HD  + +V   N  F ++   D   +VW          K       + +     V  +  
Sbjct: 13  HDADIFSVSACNS-FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQA 71

Query: 73  IKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKI-LRGHKASVHSIAAETSG 131
           I+ D  +   VAT S    L  ++   E+        +   +     K S  ++    S 
Sbjct: 72  IERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASN 131

Query: 132 NMVC-----SGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHT 186
           + +      +     T  +W+ +      N +++                  + + +  +
Sbjct: 132 DRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGT-------VESPMTPS 184

Query: 187 QCVSSVVWPQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCI---------DIGGE 237
           Q  +SV   ++  I +   + +V+  ++   + L +     ++               G 
Sbjct: 185 QFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGS 244

Query: 238 GSALIAAGGSDPILRIWDPR----------KPGTSAPVFQFSSHNSWISACKWHNKSWFH 287
             A+     S   + +++               +S       +H+SW+ +  +++     
Sbjct: 245 LLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETL 304

Query: 288 LISASYDGKVMLWDLRTAWPLSVIDSHKDKVLCADWWR-----GDSVISGGVDS 336
             SA +DGK+  WD++T   ++ ++ H D +   +        GDS+   GV  
Sbjct: 305 -CSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFD 357

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.5 bits (111), Expect = 1e-06
 Identities = 24/247 (9%), Positives = 61/247 (24%), Gaps = 45/247 (18%)

Query: 109 IRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQ 168
           I +    + H A + S++A    +   S S D  + +W     D    +        +  
Sbjct: 4   IATANAGKAHDADIFSVSA--CNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHK- 60

Query: 169 VEEPQLEGEAISTLVGHTQCVSSVVWPQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKA 228
                                      +   + + S+   +  + +    +   +   K 
Sbjct: 61  ----------SGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKL 110

Query: 229 LNCIDIGGEGSA---------------LIAAGGSDPILRIWDPRKPGTSAPVFQFSS--- 270
                   + S                 + A        IW        +     +    
Sbjct: 111 DLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPT 170

Query: 271 ------------HNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKV 318
                        + + ++     +    + +   +G V + +L T  PL   +S    +
Sbjct: 171 LELQGTVESPMTPSQFATSVDISERGL--IATGFNNGTVQISELSTLRPLYNFESQHSMI 228

Query: 319 LCADWWR 325
             ++  R
Sbjct: 229 NNSNSIR 235

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.0 bits (164), Expect = 1e-13
 Identities = 51/295 (17%), Positives = 103/295 (34%), Gaps = 15/295 (5%)

Query: 15  QKEEEPSLHDDWVSAVDGSNPGFILTGCYDNLGRVWKA-GGVCTHILEGHCGAVSSVNII 73
           Q+    S     V  +   +   I++G  DN  ++W      C  IL GH G+V  +   
Sbjct: 6   QRIHCRSETSKGVYCLQ-YDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYD 64

Query: 74  KSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNM 133
           +   +   + +T            +             F        S     A      
Sbjct: 65  ERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMAS 124

Query: 134 VCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLE-GEAISTLVGHTQCVSSV 192
               +    +   R   +    +   I    G+  ++       E + TL GH + + + 
Sbjct: 125 PTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGI-AC 183

Query: 193 VWPQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEGSALIAAGGSDPILR 252
           +  +   + S S D+++R WD+E G  L  +   + L         +  I +G  D  ++
Sbjct: 184 LQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIR--FDNKRIVSGAYDGKIK 241

Query: 253 IWD------PRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWD 301
           +WD      PR P  +  +     H+  +   ++       ++S+S+D  +++WD
Sbjct: 242 VWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEF---QIVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.2 bits (149), Expect = 1e-11
 Identities = 46/305 (15%), Positives = 90/305 (29%), Gaps = 45/305 (14%)

Query: 60  LEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHK 119
           +         V  ++ D  K   + +  +D T+++W  +  E           +IL GH 
Sbjct: 8   IHCRSETSKGVYCLQYDDQK---IVSGLRDNTIKIWDKNTLECK---------RILTGHT 55

Query: 120 ASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAI 179
            SV  +  +    +  S      +    T +                          +  
Sbjct: 56  GSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDR 115

Query: 180 STLVGHTQCVSSVVW---------------PQQETIYSASWDHSVRTWDVEMGKDLSDIF 224
           S  V      + +                    + I SAS D +++ W+    + +  + 
Sbjct: 116 SIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLN 175

Query: 225 CGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKS 284
             K    I        L+ +G SD  +R+WD                       +     
Sbjct: 176 GHK--RGIACLQYRDRLVVSGSSDNTIRLWDIECGA------CLRVLEGHEELVRCIRFD 227

Query: 285 WFHLISASYDGKVMLWDLRTA---------WPLSVIDSHKDKVLCADWWRGDSVISGGVD 335
              ++S +YDGK+ +WDL  A           L  +  H  +V     +    ++S   D
Sbjct: 228 NKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQ-FDEFQIVSSSHD 286

Query: 336 SKLCV 340
             + +
Sbjct: 287 DTILI 291

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 67.8 bits (164), Expect = 3e-13
 Identities = 30/292 (10%), Positives = 70/292 (23%), Gaps = 18/292 (6%)

Query: 23  HDDWVSAVDGSNPG-FILTGCYDN-LGRVWKAGGVCTHILEGHCGAVSSVNIIKSDGLKY 80
           H   + A+        +++   D  L           H +      V +     S     
Sbjct: 54  HLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVA 113

Query: 81  VTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWD 140
                          +     +         +            + +             
Sbjct: 114 CGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIET 173

Query: 141 CTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQL-------EGEAISTLVGHTQCVSSVV 193
              +   T  +    +       +                 EG    T  GH   ++++ 
Sbjct: 174 GQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAIC 233

Query: 194 W-PQQETIYSASWDHSVR---TWDVEMGKDLSDIFCGKALNCIDIGGEGSALIAAGGSDP 249
           + P      + S D + R       +     S       +  +     G  L+ AG  D 
Sbjct: 234 FFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGR-LLLAGYDDF 292

Query: 250 ILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWD 301
              +WD      +      + H++ +S     +     + + S+D  + +W+
Sbjct: 293 NCNVWDAL---KADRAGVLAGHDNRVSCLGVTDDG-MAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 66.3 bits (160), Expect = 7e-13
 Identities = 53/308 (17%), Positives = 94/308 (30%), Gaps = 39/308 (12%)

Query: 56  CTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKIL 115
               L GH   + +++      L    + +AS+D  L +W       V           +
Sbjct: 47  TRRTLRGHLAKIYAMHWGTDSRL----LVSASQDGKLIIWDSYTTNKV---------HAI 93

Query: 116 RGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEP--- 172
               + V + A   SGN V  G  D   S++     +                       
Sbjct: 94  PLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLD 153

Query: 173 ------------------QLEGEAISTLVGHTQCVSSVVWPQQETIYSASWDHSVRTWDV 214
                             +   +  +        +S  + P      S + D S + WDV
Sbjct: 154 DNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDV 213

Query: 215 EMGKDLSDIFCGKA-LNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNS 273
             G         ++ +N I     G+   A G  D   R++D R        +   +   
Sbjct: 214 REGMCRQTFTGHESDINAICFFPNGN-AFATGSDDATCRLFDLRADQEL-MTYSHDNIIC 271

Query: 274 WISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKVLCADWWR-GDSVISG 332
            I++  +       L++   D    +WD   A    V+  H ++V C      G +V +G
Sbjct: 272 GITSVSFSKSGRL-LLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATG 330

Query: 333 GVDSKLCV 340
             DS L +
Sbjct: 331 SWDSFLKI 338

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 56.7 bits (135), Expect = 1e-09
 Identities = 46/279 (16%), Positives = 89/279 (31%), Gaps = 30/279 (10%)

Query: 86  ASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISL 145
           A  D TL     + + +     + R  + LRGH A ++++   T   ++ S S D  + +
Sbjct: 24  ACADATLSQITNNIDPVGRIQMRTR--RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLII 81

Query: 146 WRTNDSDAAG---------------------NQVSIKKRKGNNQVEEPQLEGEAISTLVG 184
           W +  ++                            +        ++  +        L G
Sbjct: 82  WDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAG 141

Query: 185 HTQCVSSVVWPQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEGSALIAA 244
           HT  +S   +     I ++S D +   WD+E G+  +                 + L  +
Sbjct: 142 HTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVS 201

Query: 245 GGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVML--WDL 302
           G  D   ++WD R          F+ H S I+A  +         + S D    L     
Sbjct: 202 GACDASAKLWDVR---EGMCRQTFTGHESDINAICFFPNGN-AFATGSDDATCRLFDLRA 257

Query: 303 RTAWPLSVIDSHKDKVLCADWWR-GDSVISGGVDSKLCV 340
                    D+    +    + + G  +++G  D    V
Sbjct: 258 DQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNV 296

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 67.1 bits (162), Expect = 5e-13
 Identities = 53/330 (16%), Positives = 101/330 (30%), Gaps = 53/330 (16%)

Query: 23  HDDWVSAVDGSNPG-FILTGCYDNLGRVWKAGGVCTHILEGHCGAVSSVNIIKSDGLKYV 81
           H   V  V  SN G ++ TGC         + G     L     A      + +      
Sbjct: 61  HTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSS 120

Query: 82  T--------------VATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAA 127
                          +AT ++D+ +R+W  +  ++V   +          +  S   + +
Sbjct: 121 DLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVS 180

Query: 128 ETSGNMV----------------CSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEE 171
            +    V                  G     +S        A     +++          
Sbjct: 181 GSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLV 240

Query: 172 PQLEGEAISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALN 230
            +L+ E   +  GH   V SVV+    +++ S S D SV+ W+++   + SD     +  
Sbjct: 241 ERLDSE-NESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGT 299

Query: 231 CIDIG------------GEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISAC 278
           C                 +    I +G  D  +  WD +   +  P+     H + + + 
Sbjct: 300 CEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKK---SGNPLLMLQGHRNSVISV 356

Query: 279 KWHNKSWFH-----LISASYDGKVMLWDLR 303
              N S          + S D K  +W  +
Sbjct: 357 AVANGSSLGPEYNVFATGSGDCKARIWKYK 386

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 66.0 bits (159), Expect = 1e-12
 Identities = 49/369 (13%), Positives = 116/369 (31%), Gaps = 61/369 (16%)

Query: 27  VSAVDGSNPGFILTGCYDNLGRVWKAG-----GVCTHILEGHCGAVSSVNIIKSDGLKYV 81
           +  +D  +    L    ++   ++         V  H    H   V  V           
Sbjct: 20  LLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEY--- 76

Query: 82  TVATASKDQTLRLWKFDAEELV---------NHPKKIRSFKILRGHKASVHSIAAETSGN 132
            +AT   ++T ++++     LV         N   +  +          + S+     G 
Sbjct: 77  -LATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGK 134

Query: 133 MVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVE------------------EPQL 174
            + +G+ D  I +W   +          ++   +                      + + 
Sbjct: 135 FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRT 194

Query: 175 EGEAISTLVGHTQCVSSVVWPQQETIYSASWDHSVRTWDVEMGKDLSDIFCG-------- 226
              +++  +       +V     + I + S D +VR WD E G  +  +           
Sbjct: 195 GQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHK 254

Query: 227 KALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWF 286
            ++  +    +G   + +G  D  +++W+ +     +     +S    ++     +    
Sbjct: 255 DSVYSVVFTRDGQ-SVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLS 313

Query: 287 --------HLISASYDGKVMLWDLRTAWPLSVIDSHKDKVLCADWWRGDS-------VIS 331
                   +++S S D  V+ WD ++  PL ++  H++ V+      G S         +
Sbjct: 314 VATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFAT 373

Query: 332 GGVDSKLCV 340
           G  D K  +
Sbjct: 374 GSGDCKARI 382

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 62.1 bits (149), Expect = 2e-11
 Identities = 49/184 (26%), Positives = 72/184 (39%), Gaps = 24/184 (13%)

Query: 83  VATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCT 142
           +A  S D+ +R+W  D+E      +     +   GHK SV+S+     G  V SGS D +
Sbjct: 220 IAAGSLDRAVRVW--DSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRS 277

Query: 143 ISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW-PQQETIY 201
           + LW   +++             N    +    G    T +GH   V SV      E I 
Sbjct: 278 VKLWNLQNAN-------------NKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYIL 324

Query: 202 SASWDHSVRTWDVEMGKDL-------SDIFCGKALNCIDIGGEGSALIAAGGSDPILRIW 254
           S S D  V  WD + G  L       + +      N   +G E + + A G  D   RIW
Sbjct: 325 SGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYN-VFATGSGDCKARIW 383

Query: 255 DPRK 258
             +K
Sbjct: 384 KYKK 387

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 56.5 bits (134), Expect = 1e-09
 Identities = 31/305 (10%), Positives = 73/305 (23%), Gaps = 30/305 (9%)

Query: 54  GVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFK 113
           G    +  GH  A+++++           + +A  +  +  W                  
Sbjct: 2   GSIDQVRYGHNKAITALSSSADGKT----LFSADAEGHINSWDISTGISNR--------V 49

Query: 114 ILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQ 173
               H   +  I   + G++      D    +        +   V+ K       +    
Sbjct: 50  FPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSA 109

Query: 174 LEGEAISTLVGHTQCV---------------SSVVWPQQETIYSASWDHSVRTWDVEMGK 218
               A++    H                      +   ++ +     D  V  + +    
Sbjct: 110 DGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGAS 169

Query: 219 DLSDIFCGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISAC 278
                          +    +             I                + ++   AC
Sbjct: 170 VSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVAC 229

Query: 279 KWHNKSWFHLISASYDGKVMLWDLRTAWPLSVI---DSHKDKVLCADWWRGDSVISGGVD 335
              +     L + S D  V++W++       +I         V    W    +++S G D
Sbjct: 230 VSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQD 289

Query: 336 SKLCV 340
           S +  
Sbjct: 290 SNIKF 294

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 51.9 bits (122), Expect = 4e-08
 Identities = 34/289 (11%), Positives = 88/289 (30%), Gaps = 11/289 (3%)

Query: 23  HDDWVSAVDGSNPG-FILTGCYDNLGRVW--KAGGVCTHILEGHCGAVSSVNIIKSDGLK 79
           H+  ++A+  S  G  + +   +     W    G       + H   ++ +       L 
Sbjct: 11  HNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLF 70

Query: 80  YVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSW 139
            V+     K         D+ + V +    +   +       +   A      +   G  
Sbjct: 71  TVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKL 130

Query: 140 DCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGH------TQCVSSVV 193
                 + ++    + ++  +     +++V   +L G ++S +         T    S  
Sbjct: 131 TEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNN 190

Query: 194 WPQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEGSALIAAGGSDPILRI 253
                    +         +       +      A          +  +A G  D  + +
Sbjct: 191 GAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIV 250

Query: 254 WDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDL 302
           W+  KP     + + +   S +++  W N++   ++SA  D  +  W++
Sbjct: 251 WNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT--IVSAGQDSNIKFWNV 297

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.3 bits (126), Expect = 1e-08
 Identities = 34/291 (11%), Positives = 75/291 (25%), Gaps = 16/291 (5%)

Query: 23  HDDWVSAVDGSNPGFILTGCYDNLGRVWKA------GGVCTHILEGHCGAVSSVNIIKSD 76
           H + V AV  SNP   +        +VW          V           + S  ++   
Sbjct: 50  HGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDG 109

Query: 77  -----GLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSG 131
                G +  T++           K +          +      +   +           
Sbjct: 110 CTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWD 169

Query: 132 NMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSS 191
               +            +  D + +   +     +N V    L           T  + S
Sbjct: 170 LHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFS 229

Query: 192 VVWPQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEGSALIAAGGSDPIL 251
           + +       +   + S          D   +   ++               + G D +L
Sbjct: 230 LGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLL 289

Query: 252 RIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDL 302
             W        A +FQ    +S + +C        ++++ S D K  ++++
Sbjct: 290 NAWRTP---YGASIFQSK-ESSSVLSCDISVDD-KYIVTGSGDKKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.5 bits (111), Expect = 9e-07
 Identities = 36/295 (12%), Positives = 65/295 (22%), Gaps = 27/295 (9%)

Query: 62  GHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKAS 121
            H   V +V I  +       V T      +++W           K   S          
Sbjct: 49  NHGEVVCAVTI-SNPTR---HVYTGG-KGCVKVWDISH----PGNKSPVSQLDCLNRDNY 99

Query: 122 VHSIAAETSGNMVCSGS-------WDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQL 174
           + S      G  +  G        WD      R      +            +       
Sbjct: 100 IRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSC 159

Query: 175 EGEAISTLVGHTQCVSSVVWPQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDI 234
             +    +           +       S     +  T     G D +             
Sbjct: 160 CSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQ 219

Query: 235 GGEGSALIAAGGSDPILRIWDPRKPG--------TSAPVFQFSSHNSWISACKWHNKSWF 286
             + ++ I + G  P                        +Q   H S + + K+     +
Sbjct: 220 QHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKW 279

Query: 287 HLISASYDGKVMLWDLRTAWPLSVIDSHKDKVLCADWWR-GDSVISGGVDSKLCV 340
             +S   D  +  W       +         VL  D       +++G  D K  V
Sbjct: 280 -FVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISVDDKYIVTGSGDKKATV 332

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.4 bits (103), Expect = 1e-05
 Identities = 26/262 (9%), Positives = 66/262 (25%), Gaps = 10/262 (3%)

Query: 2   KVLEIEYIKAVAPQKEEEPSLHDDWVSAVDGSNPGFILTGCYDNLGRVWKAGGVCTHILE 61
           KV +I +    +P  + +    D+++ +      G  L    +    +            
Sbjct: 75  KVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEA-STLSIWDLAAPTPRI 133

Query: 62  GHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKAS 121
                 S+             V  +              + +    +  +        ++
Sbjct: 134 KAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISN 193

Query: 122 VHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSI-------KKRKGNNQVEEPQL 174
             +       +              + +D  +    +              ++ VE   +
Sbjct: 194 DGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHV 253

Query: 175 EGEAISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCID 233
                  L  H  CV S+ +    +   S   D+ +  W    G  +       ++   D
Sbjct: 254 NKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCD 313

Query: 234 IGGEGSALIAAGGSDPILRIWD 255
           I  +    I  G  D    +++
Sbjct: 314 ISVDDK-YIVTGSGDKKATVYE 334

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.3 bits (118), Expect = 1e-07
 Identities = 30/301 (9%), Positives = 75/301 (24%), Gaps = 38/301 (12%)

Query: 56  CTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKIL 115
               + GH   ++++            + + S D  +  W                  + 
Sbjct: 5   VLKTISGHNKGITAL--------TVNPLISGSYDGRIMEWSSS--------------SMH 42

Query: 116 RGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLE 175
           + H   + S+    +         D       T     +  +V+     G   V     +
Sbjct: 43  QDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDD 102

Query: 176 GEAISTLVGHTQCVSSVVWPQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIG 235
              + +  G       +  P      S ++          +                 + 
Sbjct: 103 LLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLR 162

Query: 236 GEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHL------- 288
            + S +  +     I       K        +    + W       N   +         
Sbjct: 163 AKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANE 222

Query: 289 --------ISASYDGKVMLWDLRTAW-PLSVIDSHKDKVLCADWWRGDSVISGGVDSKLC 339
                    + S D  + ++ ++     +  +++HKD V    W    +++S G D+ + 
Sbjct: 223 EEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPSTLVSSGADACIK 282

Query: 340 V 340
            
Sbjct: 283 R 283

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.2 bits (115), Expect = 3e-07
 Identities = 31/285 (10%), Positives = 89/285 (31%), Gaps = 17/285 (5%)

Query: 23  HDDWVSAVDGSNPGFILTGCYDNLGRVWKAGGVCTHILEGHCGAVSSVNIIKSDGLKYVT 82
           H+  ++A+  +    +++G YD     W +  +     + H   + S++  K+     ++
Sbjct: 12  HNKGITALTVNP---LISGSYDGRIMEWSSSSM----HQDHSNLIVSLDNSKAQEYSSIS 64

Query: 83  VATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCT 142
                K   +   +F ++  V          +L      +   +           +   +
Sbjct: 65  WDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGS 124

Query: 143 ISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWPQQETIYS 202
                 N       + +  +    + +E        +     +     S  +     +  
Sbjct: 125 AVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMG 184

Query: 203 ASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIG------GEGSALIAAGGSDPILRIWDP 256
               + +++ +V+  +         A++                L+A G  D  + I+  
Sbjct: 185 KILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSV 244

Query: 257 RKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWD 301
           ++P     +   ++H   ++   W   S   L+S+  D  +  W+
Sbjct: 245 KRPMK--IIKALNAHKDGVNNLLWETPS--TLVSSGADACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.9 bits (96), Expect = 5e-05
 Identities = 17/97 (17%), Positives = 33/97 (34%), Gaps = 24/97 (24%)

Query: 118 HKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGE 177
             A   +   E   ++V +GS D  I ++                              +
Sbjct: 214 KPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRP------------------------MK 249

Query: 178 AISTLVGHTQCVSSVVWPQQETIYSASWDHSVRTWDV 214
            I  L  H   V++++W    T+ S+  D  ++ W+V
Sbjct: 250 IIKALNAHKDGVNNLLWETPSTLVSSGADACIKRWNV 286

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.6 bits (85), Expect = 0.002
 Identities = 14/133 (10%), Positives = 35/133 (26%), Gaps = 7/133 (5%)

Query: 175 EGEAISTLVGHTQCVSSVVWPQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDI 234
             E + T+ GH + ++++       + S S+D  +  W                +  +D 
Sbjct: 2   HDEVLKTISGHNKGITALTV---NPLISGSYDGRIMEWSSSSMHQDHS----NLIVSLDN 54

Query: 235 GGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYD 294
                    +      +      + G+   V   ++           +       +    
Sbjct: 55  SKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDII 114

Query: 295 GKVMLWDLRTAWP 307
             V L    +A  
Sbjct: 115 KSVRLNSPGSAVS 127

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.9 bits (83), Expect = 0.003
 Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 10/73 (13%)

Query: 260 GTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKVL 319
           G    +   S HN  I+A   +      LIS SYDG++M W   +     +   H + ++
Sbjct: 1   GHDEVLKTISGHNKGITALTVN-----PLISGSYDGRIMEWSSSS-----MHQDHSNLIV 50

Query: 320 CADWWRGDSVISG 332
             D  +     S 
Sbjct: 51  SLDNSKAQEYSSI 63

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.3 bits (118), Expect = 2e-07
 Identities = 49/354 (13%), Positives = 107/354 (30%), Gaps = 51/354 (14%)

Query: 23  HDDWVSAVDGSNPGFILTGCYDNLGRVWKA-GGVCTHILEGHCGAVSSVNIIKSDGLKYV 81
           H   V         +++TG  D + RV+ +        L GH G V ++           
Sbjct: 11  HMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG----- 65

Query: 82  TVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDC 141
            + + S D+T+R+W        +  +   S           +          + +GS D 
Sbjct: 66  ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNI-------KYIVTGSRDN 118

Query: 142 TISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWPQQETIY 201
           T+ +W+     +       ++         P+     +  L GH   V +V       + 
Sbjct: 119 TLHVWKLPKESSV--PDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVS 176

Query: 202 SASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGT 261
             S+D+++  WDV   K L  +          I         +   D  +RIWD      
Sbjct: 177 -GSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGEL 235

Query: 262 SAPVFQFSSHNSWISACKWHNKSWF----------------------------------H 287
              +   ++    +        S                                    +
Sbjct: 236 MYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDN 295

Query: 288 LISASYDGKVMLWDLRTAWPL-SVIDSHKDKVLCADWWRGDSVISGGVDSKLCV 340
           ++ +  + +  +++LR+   + + I    D++   ++     V +   D +  +
Sbjct: 296 ILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKTLVAAVEKDGQSFL 349

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.9 bits (117), Expect = 2e-07
 Identities = 24/145 (16%), Positives = 52/145 (35%), Gaps = 3/145 (2%)

Query: 180 STLVGHTQCVSSVVWPQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEGS 239
           +TL GH   V + +  +   + + + D  +R +D    K L     G       +     
Sbjct: 6   TTLRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLL-QLSGHDGGVWALKYAHG 64

Query: 240 ALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVML 299
            ++ +G +D  +R+WD +K            +++         K+  ++++ S D  + +
Sbjct: 65  GILVSGSTDRTVRVWDIKKGCC--THVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHV 122

Query: 300 WDLRTAWPLSVIDSHKDKVLCADWW 324
           W L     +       D  L     
Sbjct: 123 WKLPKESSVPDHGEEHDYPLVFHTP 147

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.3 bits (105), Expect = 5e-06
 Identities = 24/175 (13%), Positives = 48/175 (27%), Gaps = 28/175 (16%)

Query: 115 LRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQL 174
           LRGH  SV +   +   N V +G+ D  I ++ + +                        
Sbjct: 8   LRGHMTSVIT-CLQFEDNYVITGADDKMIRVYDSIN------------------------ 42

Query: 175 EGEAISTLVGHTQCVSSVVWPQQETIYSAS--WDHSVRTWDVEMGKDLSDIFCGKALNCI 232
             + +  L GH   V ++ +     + S S      V          + +          
Sbjct: 43  -KKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLD 101

Query: 233 DIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFH 287
            +  +    I  G  D  L +W   K  +     +   +       + +      
Sbjct: 102 IVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGV 156

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.7 bits (101), Expect = 2e-05
 Identities = 11/66 (16%), Positives = 25/66 (37%), Gaps = 2/66 (3%)

Query: 268 FSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKVLCADWWRGD 327
              H + +  C     ++  +I+ + D  + ++D      L  +  H   V    +  G 
Sbjct: 8   LRGHMTSVITCLQFEDNY--VITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG 65

Query: 328 SVISGG 333
            ++SG 
Sbjct: 66  ILVSGS 71

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.2 bits (84), Expect = 0.002
 Identities = 11/71 (15%), Positives = 25/71 (35%)

Query: 185 HTQCVSSVVWPQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEGSALIAA 244
           HT   +   +   + I  +  ++    +++  GK +       A     +  +G  L+AA
Sbjct: 281 HTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKTLVAA 340

Query: 245 GGSDPILRIWD 255
              D    +  
Sbjct: 341 VEKDGQSFLEI 351

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 49.5 bits (116), Expect = 3e-07
 Identities = 28/260 (10%), Positives = 63/260 (24%), Gaps = 13/260 (5%)

Query: 82  TVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDC 141
            +A    +  + +++           K      L+ H   V  +      N + +   D 
Sbjct: 21  QIAICPNNHEVHIYEKSG-------NKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDR 73

Query: 142 TISLWRTNDSDA-AGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWPQQETI 200
              +W            +    R        P  +  A+ +                   
Sbjct: 74  NAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVC 133

Query: 201 YSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPG 260
                        ++   +   +  G       I     +       +         K  
Sbjct: 134 KHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRI----FSAYIKEVEERPAPTPWGSKMP 189

Query: 261 TSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKVLC 320
               +F+ SS   W+    +           S+D  V L D      ++ + S    +L 
Sbjct: 190 FGELMFESSSSCGWVHGVCFSANGSRVAWV-SHDSTVCLADADKKMAVATLASETLPLLA 248

Query: 321 ADWWRGDSVISGGVDSKLCV 340
             +    S+++ G D    +
Sbjct: 249 VTFITESSLVAAGHDCFPVL 268

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 48.3 bits (113), Expect = 6e-07
 Identities = 19/210 (9%), Positives = 42/210 (20%), Gaps = 26/210 (12%)

Query: 118 HKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGE 177
               +   A       +     +  + ++  + +                       +  
Sbjct: 6   LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGN-----------------------KWV 42

Query: 178 AISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMG--KDLSDIFCGKALNCIDI 234
            +  L  H   V+ V W P    I +   D +   W ++    K    I           
Sbjct: 43  QVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVR 102

Query: 235 GGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYD 294
                   A G    ++ I    +                       + +   L + S D
Sbjct: 103 WAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCD 162

Query: 295 GKVMLWDLRTAWPLSVIDSHKDKVLCADWW 324
            K  ++                        
Sbjct: 163 FKCRIFSAYIKEVEERPAPTPWGSKMPFGE 192

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 40.2 bits (92), Expect = 2e-04
 Identities = 30/303 (9%), Positives = 73/303 (24%), Gaps = 24/303 (7%)

Query: 21  SLHDDWVSAVDGSNPG-FILTGCYDNLGRVWKAGG---VCTHILEGHCGAVSSVNIIKSD 76
           S   + +S    +     I     ++   +++  G   V  H L+ H G V+ V+     
Sbjct: 4   SFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDS 63

Query: 77  GLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCS 136
                 + T   D+   +W             +R  +  R  + + +             
Sbjct: 64  NR----IVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVI 119

Query: 137 GSWD-CTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWP 195
                   + W          + ++     +                +           P
Sbjct: 120 SICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERP 179

Query: 196 QQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEGSALIAAGGSDPILRIWD 255
                 S      +          +  +      +           +A    D  + + D
Sbjct: 180 APTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSR----------VAWVSHDSTVCLAD 229

Query: 256 PRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHK 315
             K    A +   +     ++     +     L++A +D   +L+   +A          
Sbjct: 230 ADKKMAVATLASETLPLLAVTFITESS-----LVAAGHDCFPVLFTYDSAAGKLSFGGRL 284

Query: 316 DKV 318
           D  
Sbjct: 285 DVP 287

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 39.5 bits (90), Expect = 4e-04
 Identities = 15/120 (12%), Positives = 33/120 (27%), Gaps = 1/120 (0%)

Query: 185 HTQCVSSVVWPQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEGSALIAA 244
            T  + +V +  + ++ +A  D     +  +             +         +A    
Sbjct: 242 ETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERF 301

Query: 245 GGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRT 304
              D           G        +S +  IS             +   DG + +WD+R+
Sbjct: 302 QNLDKKASSEGSAAAGAGLDSLHKNSVSQ-ISVLSGGKAKCSQFCTTGMDGGMSIWDVRS 360

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 47.1 bits (111), Expect = 2e-06
 Identities = 22/150 (14%), Positives = 41/150 (27%), Gaps = 9/150 (6%)

Query: 176 GEAISTLVGHTQCVSSVVWPQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALN----- 230
            E  + L        S +      ++    D  V   D+ M +  +              
Sbjct: 52  YEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIE 111

Query: 231 -CIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLI 289
                G E    IA     P   I D        P    S+        ++H +     I
Sbjct: 112 TSKMEGWEDKYAIAGAYWPPQYVIMDGETLE---PKKIQSTRGMTYDEQEYHPEPRVAAI 168

Query: 290 SASYDGKVMLWDLRTAWPLSVIDSHKDKVL 319
            AS+     + +++    + ++D      L
Sbjct: 169 LASHYRPEFIVNVKETGKILLVDYTDLNNL 198

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 46.0 bits (107), Expect = 3e-06
 Identities = 33/256 (12%), Positives = 63/256 (24%), Gaps = 28/256 (10%)

Query: 113 KILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQ--------------- 157
           +I   H           SG    SG     + +W T  +                     
Sbjct: 52  EIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWD 111

Query: 158 --------VSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWPQQETIYSASWDHSV 209
                   V   + +  +             T              +   I S S D++V
Sbjct: 112 SESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTV 171

Query: 210 RTWDVEMGKDLSDIFCGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFS 269
             ++    K  S                  +L A+ G D  + +++      +      S
Sbjct: 172 AIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDS 231

Query: 270 SHNSWISACKWHNKSWF---HLISASYDGKVMLWDLRTAWPLSVIDSHKD--KVLCADWW 324
             N   S   +          + SAS D  + +W++ T      I              W
Sbjct: 232 LKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW 291

Query: 325 RGDSVISGGVDSKLCV 340
              +++S   +  +  
Sbjct: 292 TKQALVSISANGFINF 307

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 42.2 bits (97), Expect = 5e-05
 Identities = 28/298 (9%), Positives = 57/298 (19%), Gaps = 29/298 (9%)

Query: 27  VSAVDGSNPGFILTGCYDNLGRVWK-AGGVCTHILEGHCGAVSSVNIIKSDGLKYVTVAT 85
              +  +  G  +  C               T I   H    +      S        A+
Sbjct: 20  AVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYY----CAS 75

Query: 86  ASKDQTLRLWKFDAEELVN------HPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSW 139
                 +R+W       +           ++        K              V     
Sbjct: 76  GDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDT 135

Query: 140 DCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHT--------QCVSS 191
             +                   +        +                          S 
Sbjct: 136 GTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSV 195

Query: 192 VVWPQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEG-------SALIAA 244
              P      S   D ++  ++   G            N    G             IA+
Sbjct: 196 RYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIAS 255

Query: 245 GGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDL 302
             +D  ++IW+         +   +          W  +    L+S S +G +   + 
Sbjct: 256 ASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQ---ALVSISANGFINFVNP 310

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.5 bits (103), Expect = 1e-05
 Identities = 29/274 (10%), Positives = 65/274 (23%), Gaps = 28/274 (10%)

Query: 58  HILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRG 117
            I +     +S + II S  L    +   S D +L ++K       +   K         
Sbjct: 5   QIEQAPKDYISDIKIIPSKSL----LLITSWDGSLTVYK------FDIQAKNVDLLQSLR 54

Query: 118 HKASVHSIA-AETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEG 176
           +K  +      + +   +  G+    I       S +     + +   G  +        
Sbjct: 55  YKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICR-------- 106

Query: 177 EAISTLVGHTQCVSSVVWPQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGG 236
                     +     +            D       V   K+L+            +  
Sbjct: 107 --------ICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDT 158

Query: 237 EGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGK 296
             S  +  G ++  ++ +            + S     I       K       +S DG+
Sbjct: 159 NSS-RLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGR 217

Query: 297 VMLWDLRTAWPLSVIDSHKDKVLCADWWRGDSVI 330
           V +                         +  ++ 
Sbjct: 218 VAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLA 251

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.1 bits (102), Expect = 1e-05
 Identities = 26/318 (8%), Positives = 71/318 (22%), Gaps = 19/318 (5%)

Query: 23  HDDWVSAVDGSNPG-FILTGCYDNLGRVW----KAGGVCTHILEGHCGAVSSVNIIKSDG 77
             D++S +        +L   +D    V+    +A  V       +   +   N I +  
Sbjct: 10  PKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTD 69

Query: 78  LKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSG 137
           L+   +   +    +                  +   +              S + +   
Sbjct: 70  LQ---IYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEV 126

Query: 138 SWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWPQQ 197
                         +   N   +K +               +       Q     +    
Sbjct: 127 IDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSS---RLIVGMNNSQVQWFRLPLCEDD 183

Query: 198 ETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEGSALIAAGGSDPILRIWDPR 257
                 S           + K+     C      +       A+                
Sbjct: 184 NGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRV-------AVEFFDDQGDDYNSSKRF 236

Query: 258 KPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDK 317
                    + ++    +++ ++  +    L +A  DG +  W+L+T   +       + 
Sbjct: 237 AFRCHRLNLKDTNLAYPVNSIEFSPR-HKFLYTAGSDGIISCWNLQTRKKIKNFAKFNED 295

Query: 318 VLCADWWRGDSVISGGVD 335
            +       + +     D
Sbjct: 296 SVVKIACSDNILCLATSD 313

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.4 bits (90), Expect = 4e-04
 Identities = 16/128 (12%), Positives = 38/128 (29%), Gaps = 11/128 (8%)

Query: 122 VHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAIST 181
                           S D  +++   +D     N       + +               
Sbjct: 197 RDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNL----------K 246

Query: 182 LVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEGSA 240
                  V+S+ + P+ + +Y+A  D  +  W+++  K + +       + + I    + 
Sbjct: 247 DTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNI 306

Query: 241 LIAAGGSD 248
           L  A   D
Sbjct: 307 LCLATSDD 314

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.7 bits (88), Expect = 6e-04
 Identities = 18/218 (8%), Positives = 54/218 (24%), Gaps = 27/218 (12%)

Query: 112 FKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEE 171
            +I +  K  +  I    S +++   SWD ++++++ +      +               
Sbjct: 4   VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVD--------------- 48

Query: 172 PQLEGEAISTLVGHTQCVSSVVW--PQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKAL 229
                  +   + +   +    +       IY  +    +   D+        +   +A 
Sbjct: 49  -------LLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEAN 101

Query: 230 NCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFH-- 287
             I    +         S   L      +      +   + +++             +  
Sbjct: 102 LGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSS 161

Query: 288 -LISASYDGKVMLWDLRTAWPLSVIDSHKDKVLCADWW 324
            LI    + +V  + L      +               
Sbjct: 162 RLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDV 199

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.4 bits (95), Expect = 9e-05
 Identities = 19/115 (16%), Positives = 30/115 (26%), Gaps = 1/115 (0%)

Query: 188 CVSSVVWPQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEGSALIAAGGS 247
             S        T+ S            E  K + D           +    S   A  G+
Sbjct: 212 EFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGA 271

Query: 248 DPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDL 302
           D  +R+WD          +                     +IS S DG +  ++L
Sbjct: 272 DATIRVWDVTT-SKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.9 bits (91), Expect = 3e-04
 Identities = 34/332 (10%), Positives = 86/332 (25%), Gaps = 33/332 (9%)

Query: 20  PSLHDDWVSAVDGSNPG-FILTGCYDN----LGRVWKAGGVCTHILEGHCG-AVSSVNII 73
           PS   ++ + +        I   C  +          +         GH    V++V   
Sbjct: 13  PSTQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFS 72

Query: 74  KSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNM 133
              G +Y+   +  +   + +W +  ++  ++  ++      +     +  I+ +  G  
Sbjct: 73  PIKGSQYL--CSGDESGKVIVWGWTFDK-ESNSVEVNVKSEFQVLAGPISDISWDFEGRR 129

Query: 134 VCSGSWDCTISL-WRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSV 192
           +C           + + DS  +  +VS   ++ N    +      +++     +      
Sbjct: 130 LCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQG 189

Query: 193 VWPQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEGSALIAAGGSDPILR 252
              +                DVE   D  +       +                      
Sbjct: 190 PPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRK-------------------I 230

Query: 253 IWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVID 312
                K G      +                      +   D  + +WD+ T+  +    
Sbjct: 231 SCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWT 290

Query: 313 SHKDKV----LCADWWRGDSVISGGVDSKLCV 340
             K ++    +         +IS  +D  L  
Sbjct: 291 LDKQQLGNQQVGVVATGNGRIISLSLDGTLNF 322

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 40.7 bits (94), Expect = 2e-04
 Identities = 22/265 (8%), Positives = 46/265 (17%), Gaps = 40/265 (15%)

Query: 75  SDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKIL---RGHKASV--------H 123
           +   +      A    T   W   A               L    G   S+         
Sbjct: 29  AISRRSHITLPAYFAGTTENWVSCAG----------CGVTLGHSLGAFLSLAVAGHSGSD 78

Query: 124 SIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLV 183
              A TS      G     + ++     D             +            I    
Sbjct: 79  FALASTSFARSAKGKRTDYVEVF-----DPVTFLPIADIELPDAPRFSVGPRVHII---- 129

Query: 184 GHTQCVSSVVWPQQETIYSASW-DHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEGSALI 242
                           +    +   +     V    D          +          L 
Sbjct: 130 --------GNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLG 181

Query: 243 AAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDL 302
           +   S     +                + N    A + +      + + +          
Sbjct: 182 SCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGM-LVWAVASSILQGDIPA 240

Query: 303 RTAWPLSVIDSHKDKVLCADWWRGD 327
             A   + ID ++      ++    
Sbjct: 241 AGATMKAAIDGNESGRKADNFRSAG 265

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 39.9 bits (92), Expect = 3e-04
 Identities = 21/168 (12%), Positives = 45/168 (26%), Gaps = 10/168 (5%)

Query: 176 GEAISTLVGHTQCVSSVVWPQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALN----- 230
            + +  +        S +      +     D  +   D+   +          +      
Sbjct: 52  KKIVKVIDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVE 111

Query: 231 -CIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLI 289
                G E    IA     P   I D        P    S+    +    +H +     I
Sbjct: 112 SSKFKGYEDRYTIAGAYWPPQFAIMDGETLE---PKQIVSTRGMTVDTQTYHPEPRVAAI 168

Query: 290 SASYDGKVMLWDLRTAWPLSVIDSHKDKVL-CADWWRGDSVISGGVDS 336
            AS++    + +++    + +++      L          +  GG DS
Sbjct: 169 IASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDS 216

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 39.1 bits (89), Expect = 6e-04
 Identities = 15/159 (9%), Positives = 42/159 (26%), Gaps = 23/159 (14%)

Query: 82  TVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDC 141
            +   S          D   L    + +    ++     S +            +G +D 
Sbjct: 192 NLYYLSYRSLDPSP--DRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDL 249

Query: 142 T-ISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLV----------------- 183
             +    +  +   G+   I   + +  +    + GE  +                    
Sbjct: 250 NDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRK 309

Query: 184 --GHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKD 219
                  ++ +     ++T+     D  + T+ +E  +D
Sbjct: 310 VTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPED 348

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 36.8 bits (83), Expect = 0.003
 Identities = 16/158 (10%), Positives = 36/158 (22%), Gaps = 15/158 (9%)

Query: 194 WPQQETIYSASWDHSVRTWDVEMG--------KDLSDIFCGKALNCIDIGGEGSALIAAG 245
               + +Y  S+     + D  +         K         + N   +        A  
Sbjct: 187 DADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGE 246

Query: 246 GSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKS--WFHLISASYDGKVMLWDLR 303
                +                     S I             +   A   G ++ +D++
Sbjct: 247 YDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVK 306

Query: 304 TAWPLSVIDSHKDKVLCADWWR-GDSVISGGVDSKLCV 340
           T      +   K+ +          +V+    D K+  
Sbjct: 307 TR----KVTEVKNNLTDLRLSADRKTVMVRKDDGKIYT 340

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 36.6 bits (83), Expect = 0.003
 Identities = 24/274 (8%), Positives = 64/274 (23%), Gaps = 14/274 (5%)

Query: 43  YDNLGRVWKAGGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEEL 102
            D            + +      ++ S  I       Y TV    +     + K    E+
Sbjct: 67  IDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEV 126

Query: 103 VNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKK 162
            +    + +  +          +        +     D      +T          ++  
Sbjct: 127 FSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTV-----ALPL 181

Query: 163 RKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW----PQQETIYSASWDHSVRTWDVEMGK 218
           R  N +                  +             ++   +A   +   + D++ GK
Sbjct: 182 RNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGK 241

Query: 219 DLSDIFCGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISAC 278
             +  F                     G    L  +D ++      + + ++ +      
Sbjct: 242 THTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRK----LIKAANLDHTYYCV 297

Query: 279 KWHNKSWFHLISASYDGKVMLWDLRTAWPLSVID 312
            +  K    L        + +++  T   +  I 
Sbjct: 298 AFDKKG-DKLYLGGTFNDLAVFNPDTLEKVKNIK 330

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	347
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.97
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.97
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.97
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.97
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.96
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.96
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.95
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.93
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.93
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.91
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.88
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.87
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.87
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.86
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.85
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.83
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.81
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.73
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.71
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.67
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.67
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.61
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.6
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.55
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.38
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.37
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.28
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.23
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.05
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.96
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	98.95
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.9
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.86
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.79
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.55
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.54
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.51
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.47
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.46
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.37
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.22
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.02
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	97.94
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	97.4
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	97.33
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	97.2
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	96.91
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	96.03
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	95.95
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	94.9
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	93.7
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	92.78
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	92.49
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	91.98
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	90.47
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	89.31
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	84.87
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	81.04

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-41  Score=299.96  Aligned_cols=278  Identities=19%  Similarity=0.280  Sum_probs=234.8

Q ss_pred             CcCCceeeccCCC-CCEEEEEecCCeEEEEcCCC------eEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEE
Q 036314           22 LHDDWVSAVDGSN-PGFILTGCYDNLGRVWKAGG------VCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRL   94 (347)
Q Consensus        22 ~h~~~v~~~~~~~-~~~l~sg~~d~~i~iw~~~~------~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~   94 (347)
                      .|...|++++|++ +.+||||+ ||.|+|||+..      .......+|.+.|.+++|+|++    ..|++++.||+|++
T Consensus        49 ~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg----~~l~s~~~dg~i~i  123 (337)
T d1gxra_          49 NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDG----CTLIVGGEASTLSI  123 (337)
T ss_dssp             CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTS----SEEEEEESSSEEEE
T ss_pred             CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCC----CEEEEeeccccccc
Confidence            6999999999984 66999987 89999999732      1334466899999999999854    36999999999999


Q ss_pred             EeccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccc
Q 036314           95 WKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQL  174 (347)
Q Consensus        95 wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (347)
                      ||+...+       .+....+.+|...+.+++|+|++.++++++.|+.|++|++.+.                       
T Consensus       124 wd~~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~-----------------------  173 (337)
T d1gxra_         124 WDLAAPT-------PRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQ-----------------------  173 (337)
T ss_dssp             EECCCC---------EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT-----------------------
T ss_pred             ccccccc-------ccccccccccccccccccccccccccccccccccccccccccc-----------------------
Confidence            9987542       2344567889999999999999999999999999999998753                       


Q ss_pred             cccccccccCCccceEEEEe-CCCCeEEEEecCCcEEEEECCCCceeeeeeeCeeeEEEEeeCCCCcEEEEecCCCcEEE
Q 036314          175 EGEAISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEGSALIAAGGSDPILRI  253 (347)
Q Consensus       175 ~~~~~~~~~~h~~~v~~~~~-~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~d~~i~i  253 (347)
                        +......+|...+.+++| +++..+++++.|+.+++||+++++.+..+.....+.++++++. +..+++++.|+.+++
T Consensus       174 --~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~~~~i~~l~~~~~-~~~l~~~~~d~~i~i  250 (337)
T d1gxra_         174 --TLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPT-GEWLAVGMESSNVEV  250 (337)
T ss_dssp             --EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTT-SSEEEEEETTSCEEE
T ss_pred             --cccccccccccccccccccccccccccccccccccccccccceeecccccccceEEEEEccc-ccccceecccccccc
Confidence              234455678889999998 5678899999999999999999988877777778899999765 467889999999999


Q ss_pred             EeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecCCCCeEEEEeecC-CCEEEEc
Q 036314          254 WDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKVLCADWWR-GDSVISG  332 (347)
Q Consensus       254 wd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~l~s~  332 (347)
                      ||++...    ......|.+.|.+++|+|++. +|++++.|+.|++||+.+++.+..+ .|.+.|++++|+| +++||+|
T Consensus       251 ~d~~~~~----~~~~~~~~~~i~~v~~s~~g~-~l~s~s~Dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~s~d~~~l~t~  324 (337)
T d1gxra_         251 LHVNKPD----KYQLHLHESCVLSLKFAYCGK-WFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTG  324 (337)
T ss_dssp             EETTSSC----EEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCCEEEEE-ECSSCEEEEEECTTSCEEEEE
T ss_pred             ccccccc----cccccccccccceEEECCCCC-EEEEEeCCCeEEEEECCCCCEEEEc-cCCCCEEEEEEeCCCCEEEEE
Confidence            9997532    456678999999999999986 5999999999999999999887775 4788999999986 6789999


Q ss_pred             cCCceEEEeec
Q 036314          333 GVDSKLCVSSG  343 (347)
Q Consensus       333 s~D~~v~vw~~  343 (347)
                      |.|++|+||+.
T Consensus       325 s~D~~I~vWdl  335 (337)
T d1gxra_         325 SGDKKATVYEV  335 (337)
T ss_dssp             ETTSCEEEEEE
T ss_pred             eCCCeEEEEEE
Confidence            99999999984

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.6e-41  Score=294.56  Aligned_cols=282  Identities=24%  Similarity=0.423  Sum_probs=240.0

Q ss_pred             CCCCcCCceeeccCC-CCCEEEEEecCCeEEEEcCC-CeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEe
Q 036314           19 EPSLHDDWVSAVDGS-NPGFILTGCYDNLGRVWKAG-GVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWK   96 (347)
Q Consensus        19 ~~~~h~~~v~~~~~~-~~~~l~sg~~d~~i~iw~~~-~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd   96 (347)
                      .+.||++.|++++|+ ++.+|||||.|++|+|||.. +.+++.+.+|.+.|.++.|++++    ..+++++.++++..|+
T Consensus        12 ~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~----~~~~~~~~~~~~~~~~   87 (317)
T d1vyhc1          12 ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSG----KLLASCSADMTIKLWD   87 (317)
T ss_dssp             EEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTS----SEEEEEETTSCCCEEE
T ss_pred             EEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeeccc----cccccccccccccccc
Confidence            366999999999998 46799999999999999974 67888999999999999999854    3689999999999999


Q ss_pred             ccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccc
Q 036314           97 FDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEG  176 (347)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (347)
                      ....+         ....+.+|...+.++.++++++.+++++.|+.+++|++.+.                         
T Consensus        88 ~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~-------------------------  133 (317)
T d1vyhc1          88 FQGFE---------CIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTG-------------------------  133 (317)
T ss_dssp             TTSSC---------EEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC-------------------------
T ss_pred             ccccc---------cccccccccccceeeeccCCCceEEeeccCcceeEeecccc-------------------------
Confidence            76543         33456789999999999999999999999999999998753                         


Q ss_pred             cccccccCCccceEEEEe-CCCCeEEEEecCCcEEEEECCCCceeeeeee-CeeeEEEEeeCC-----------------
Q 036314          177 EAISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFC-GKALNCIDIGGE-----------------  237 (347)
Q Consensus       177 ~~~~~~~~h~~~v~~~~~-~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~-~~~~~~~~~~~~-----------------  237 (347)
                      .....+.+|...+.++.| +++..|++++.|+.|++|+++++.....+.. ...+.++.+.+.                 
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  213 (317)
T d1vyhc1         134 YCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKS  213 (317)
T ss_dssp             CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC----
T ss_pred             eeeeEEccCCCcceeeecccCCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeee
Confidence            234566788889999988 5678899999999999999998877666543 334566665433                 


Q ss_pred             --CCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecCCC
Q 036314          238 --GSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHK  315 (347)
Q Consensus       238 --~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h~  315 (347)
                        .+..+++++.|+.|++||++..   .++..+.+|...|.+++|+|++. +|++|+.||.|+|||+++++++.++.+|.
T Consensus       214 ~~~~~~~~~~~~d~~i~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~h~  289 (317)
T d1vyhc1         214 GKPGPFLLSGSRDKTIKMWDVSTG---MCLMTLVGHDNWVRGVLFHSGGK-FILSCADDKTLRVWDYKNKRCMKTLNAHE  289 (317)
T ss_dssp             ---CCEEEEEETTSEEEEEETTTT---EEEEEEECCSSCEEEEEECSSSS-CEEEEETTTEEEEECCTTSCCCEEEECCS
T ss_pred             ccCCceeEeccCCCEEEEEECCCC---cEEEEEeCCCCCEEEEEECCCCC-EEEEEECCCeEEEEECCCCcEEEEEcCCC
Confidence              2346788999999999998753   35778899999999999999986 59999999999999999999999999999


Q ss_pred             CeEEEEeecC-CCEEEEccCCceEEEee
Q 036314          316 DKVLCADWWR-GDSVISGGVDSKLCVSS  342 (347)
Q Consensus       316 ~~v~~~~~~~-~~~l~s~s~D~~v~vw~  342 (347)
                      +.|++++|++ +++|||||.|++|+||+
T Consensus       290 ~~V~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         290 HFVTSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             SCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             CCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence            9999999985 67899999999999996

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.4e-39  Score=292.25  Aligned_cols=281  Identities=21%  Similarity=0.359  Sum_probs=222.9

Q ss_pred             CcCCceeeccCC-CCCEEEEEecCCeEEEEcCC-CeEEEEee------------------ccCCceEEEEEeecCCCceE
Q 036314           22 LHDDWVSAVDGS-NPGFILTGCYDNLGRVWKAG-GVCTHILE------------------GHCGAVSSVNIIKSDGLKYV   81 (347)
Q Consensus        22 ~h~~~v~~~~~~-~~~~l~sg~~d~~i~iw~~~-~~~~~~l~------------------~h~~~V~~v~~~~~~~~~~~   81 (347)
                      +|++.|++++|+ ++.+||||+ |++|++||.. +.++..+.                  +|...|.+++|+|++    .
T Consensus        60 ~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~----~  134 (388)
T d1erja_          60 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDG----K  134 (388)
T ss_dssp             ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTS----S
T ss_pred             CCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCC----C
Confidence            699999999998 466999986 8999999974 55544433                  566779999999854    4


Q ss_pred             EEEEccCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceee
Q 036314           82 TVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIK  161 (347)
Q Consensus        82 ~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~  161 (347)
                      .|++|+.||+|++|+...++         ....+.+|...|.++++++++..+++++.++.+++||.....         
T Consensus       135 ~l~s~~~dg~v~i~~~~~~~---------~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~---------  196 (388)
T d1erja_         135 FLATGAEDRLIRIWDIENRK---------IVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQ---------  196 (388)
T ss_dssp             EEEEEETTSCEEEEETTTTE---------EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE---------
T ss_pred             cceecccccccccccccccc---------cccccccccccccccccccccccccccccceeeeeeeccccc---------
Confidence            79999999999999987654         445678899999999999999999999999999999987531         


Q ss_pred             eccCCCccccccccccccccccCCccceEEEEeC-CCCeEEEEecCCcEEEEECCCCceeeeeee--------CeeeEEE
Q 036314          162 KRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWP-QQETIYSASWDHSVRTWDVEMGKDLSDIFC--------GKALNCI  232 (347)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~--------~~~~~~~  232 (347)
                                      .......+...+....++ ++..|++++.|+.|++||++++.....+..        ...+.++
T Consensus       197 ----------------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l  260 (388)
T d1erja_         197 ----------------CSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSV  260 (388)
T ss_dssp             ----------------EEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEE
T ss_pred             ----------------cccccccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEE
Confidence                            112222333334434444 677899999999999999998877655432        2367889


Q ss_pred             EeeCCCCcEEEEecCCCcEEEEeCCCCCC---------CCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcC
Q 036314          233 DIGGEGSALIAAGGSDPILRIWDPRKPGT---------SAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLR  303 (347)
Q Consensus       233 ~~~~~~~~~la~~~~d~~i~iwd~~~~~~---------~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~  303 (347)
                      +++++ +.+|++++.|+.|++||++....         .........|...|.+++|+|++. +|++|+.||+|++||++
T Consensus       261 ~~s~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~sg~~dg~i~vwd~~  338 (388)
T d1erja_         261 VFTRD-GQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDE-YILSGSKDRGVLFWDKK  338 (388)
T ss_dssp             EECTT-SSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGC-EEEEEETTSEEEEEETT
T ss_pred             EECCC-CCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCC-EEEEEeCCCEEEEEECC
Confidence            99765 56889999999999999874321         122345678999999999999985 69999999999999999


Q ss_pred             CCccceeecCCCCeEEEEeec-------CCCEEEEccCCceEEEeec
Q 036314          304 TAWPLSVIDSHKDKVLCADWW-------RGDSVISGGVDSKLCVSSG  343 (347)
Q Consensus       304 ~~~~~~~~~~h~~~v~~~~~~-------~~~~l~s~s~D~~v~vw~~  343 (347)
                      +++++.++.+|.+.|.+++++       ++++|||||.||+|+||+.
T Consensus       339 ~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~  385 (388)
T d1erja_         339 SGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKY  385 (388)
T ss_dssp             TCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEE
T ss_pred             CCcEEEEEeCCCCCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEee
Confidence            999999999999999999864       3568999999999999985

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.6e-38  Score=278.25  Aligned_cols=283  Identities=14%  Similarity=0.143  Sum_probs=224.0

Q ss_pred             CCCcCCceeeccCC-CCCEEEEEecCCeEEEEcCC-CeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEec
Q 036314           20 PSLHDDWVSAVDGS-NPGFILTGCYDNLGRVWKAG-GVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKF   97 (347)
Q Consensus        20 ~~~h~~~v~~~~~~-~~~~l~sg~~d~~i~iw~~~-~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~   97 (347)
                      |..+.+.+..++++ +++.||.++ ++.+.+|+.. +...+.+.+|.+.|.+++|+|++    .+|++|+.||+|++||+
T Consensus        13 p~~~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g----~~latg~~dg~i~iwd~   87 (311)
T d1nr0a1          13 PRTARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSG----YYCASGDVHGNVRIWDT   87 (311)
T ss_dssp             CCCCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTS----SEEEEEETTSEEEEEES
T ss_pred             CCCCCCCeEEEEEcCCCCEEEEEe-CCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCC----CeEeccccCceEeeeee
Confidence            44455556667766 566777764 6789999975 55677899999999999999954    47999999999999999


Q ss_pred             cccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeC--CCcEEEEecCCCCCCCccceeeeccCCCcccccccc
Q 036314           98 DAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSW--DCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLE  175 (347)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~--Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (347)
                      ..++.       .....+.+|..+|.+++|+|+++++++++.  +..+++|+.+..                        
T Consensus        88 ~~~~~-------~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~------------------------  136 (311)
T d1nr0a1          88 TQTTH-------ILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTG------------------------  136 (311)
T ss_dssp             SSTTC-------CEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTC------------------------
T ss_pred             ecccc-------ccccccccccCccccccccccccccccccccccccccccccccc------------------------
Confidence            86542       123457889999999999999999998875  566999998753                        


Q ss_pred             ccccccccCCccceEEEEeC-CCCe-EEEEecCCcEEEEECCCCceeeeeee-CeeeEEEEeeCCCCcEEEEecCCCcEE
Q 036314          176 GEAISTLVGHTQCVSSVVWP-QQET-IYSASWDHSVRTWDVEMGKDLSDIFC-GKALNCIDIGGEGSALIAAGGSDPILR  252 (347)
Q Consensus       176 ~~~~~~~~~h~~~v~~~~~~-~~~~-l~s~s~dg~v~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~la~~~~d~~i~  252 (347)
                       +....+.+|.+.|.++.|. ++++ |++++.|++|++||+++++....+.. ..++.++.++|+ +.++++++.|+.|+
T Consensus       137 -~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~-~~~l~~~~~d~~v~  214 (311)
T d1nr0a1         137 -TSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPD-GSLFASTGGDGTIV  214 (311)
T ss_dssp             -CBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTT-SSEEEEEETTSCEE
T ss_pred             -cccccccccccccccccccccceeeecccccccccccccccccccccccccccccccccccCcc-cccccccccccccc
Confidence             2345678899999999984 5554 88999999999999998877666543 457889999765 56889999999999


Q ss_pred             EEeCCCCCCC----CCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecCCC---CeEEEEeecC
Q 036314          253 IWDPRKPGTS----APVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHK---DKVLCADWWR  325 (347)
Q Consensus       253 iwd~~~~~~~----~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h~---~~v~~~~~~~  325 (347)
                      +||++.....    .......+|.+.|.+++|+|++. +|++|+.|++|+|||+++++.++++..|.   ..+.++.|. 
T Consensus       215 ~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~-~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~-  292 (311)
T d1nr0a1         215 LYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGT-KIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWT-  292 (311)
T ss_dssp             EEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEEC-
T ss_pred             ccccccccccccccccccccccccccccccccCCCCC-EEEEEeCCCeEEEEECCCCcEEEEEECCCCccceEEEEEec-
Confidence            9998753210    01122347899999999999986 59999999999999999999888887664   355667765 


Q ss_pred             CCEEEEccCCceEEEee
Q 036314          326 GDSVISGGVDSKLCVSS  342 (347)
Q Consensus       326 ~~~l~s~s~D~~v~vw~  342 (347)
                      +++|++++.||.|++|+
T Consensus       293 ~~~l~s~s~dG~i~~wd  309 (311)
T d1nr0a1         293 KQALVSISANGFINFVN  309 (311)
T ss_dssp             SSCEEEEETTCCEEEEE
T ss_pred             CCEEEEEECCCEEEEEe
Confidence            55789999999999997

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.1e-37  Score=273.91  Aligned_cols=285  Identities=21%  Similarity=0.259  Sum_probs=227.5

Q ss_pred             CCCcCCceeeccCC-CCCEEEEEecCCeEEEEcC-CCeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEec
Q 036314           20 PSLHDDWVSAVDGS-NPGFILTGCYDNLGRVWKA-GGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKF   97 (347)
Q Consensus        20 ~~~h~~~v~~~~~~-~~~~l~sg~~d~~i~iw~~-~~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~   97 (347)
                      +.||++.|++++|+ ++.+|||||.||+|++||. .+..++.+.+|...|.+++|+|++    ..+++++.|+.+++|+.
T Consensus        51 L~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~----~~l~~~~~d~~i~~~~~  126 (340)
T d1tbga_          51 LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG----NYVACGGLDNICSIYNL  126 (340)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTS----SEEEEEETTCCEEEEES
T ss_pred             ECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccc----eeeeeecccceeecccc
Confidence            56899999999998 5679999999999999997 477888999999999999999854    37999999999999998


Q ss_pred             cccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCcccccccccc
Q 036314           98 DAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGE  177 (347)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (347)
                      .....     .......+.+|.......... .+..+.....|...+.+......                         
T Consensus       127 ~~~~~-----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-------------------------  175 (340)
T d1tbga_         127 KTREG-----NVRVSRELAGHTGYLSCCRFL-DDNQIVTSSGDTTCALWDIETGQ-------------------------  175 (340)
T ss_dssp             SSSCS-----CCCEEEEECCCSSCEEEEEEE-ETTEEEEEETTTEEEEEETTTTE-------------------------
T ss_pred             ccccc-----ccccceecccccccccccccc-ccccccccccccccccccccccc-------------------------
Confidence            65432     223445677887776655544 45677788899999998765421                         


Q ss_pred             ccccccCCccceEEEEe-CCCCeEEEEecCCcEEEEECCCCceeeeeee-CeeeEEEEeeCCCCcEEEEecCCCcEEEEe
Q 036314          178 AISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFC-GKALNCIDIGGEGSALIAAGGSDPILRIWD  255 (347)
Q Consensus       178 ~~~~~~~h~~~v~~~~~-~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~la~~~~d~~i~iwd  255 (347)
                      .......+...+....+ +....+++++.|+.|++||+++++.+..+.. ...+.+++++|+ +.+|++|+.|+.|++||
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~-~~~l~s~s~d~~i~~~~  254 (340)
T d1tbga_         176 QTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPN-GNAFATGSDDATCRLFD  254 (340)
T ss_dssp             EEEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEE
T ss_pred             ccccccccceeEeeeccccccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCC-CCEEEEEeCCCeEEEEe
Confidence            11122234445555555 5667889999999999999999988777654 457899999764 56889999999999999


Q ss_pred             CCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecCCCCeEEEEeecC-CCEEEEccC
Q 036314          256 PRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKVLCADWWR-GDSVISGGV  334 (347)
Q Consensus       256 ~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~l~s~s~  334 (347)
                      ++.... ........|...|.++.|+|++. +|++|+.||.|++||+.+++.+.++.+|.+.|++++|+| +.+|||||.
T Consensus       255 ~~~~~~-~~~~~~~~~~~~i~~~~~s~~~~-~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~  332 (340)
T d1tbga_         255 LRADQE-LMTYSHDNIICGITSVSFSKSGR-LLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSW  332 (340)
T ss_dssp             TTTTEE-EEEECCTTCCSCEEEEEECSSSC-EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEET
T ss_pred             eccccc-ccccccccccCceEEEEECCCCC-EEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEcc
Confidence            875321 11223356667899999999985 599999999999999999999999999999999999985 678999999


Q ss_pred             CceEEEee
Q 036314          335 DSKLCVSS  342 (347)
Q Consensus       335 D~~v~vw~  342 (347)
                      ||+|+||+
T Consensus       333 Dg~v~iWd  340 (340)
T d1tbga_         333 DSFLKIWN  340 (340)
T ss_dssp             TSCEEEEC
T ss_pred             CCEEEEeC
Confidence            99999996

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=6.1e-38  Score=271.98  Aligned_cols=283  Identities=12%  Similarity=0.207  Sum_probs=216.7

Q ss_pred             CCCCcCCceeeccCC-CCCEEEEEecCCeEEEEcCC-CeEEEEe-eccCCceEEEEEeecCCCceEEEEEccCCCcEEEE
Q 036314           19 EPSLHDDWVSAVDGS-NPGFILTGCYDNLGRVWKAG-GVCTHIL-EGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLW   95 (347)
Q Consensus        19 ~~~~h~~~v~~~~~~-~~~~l~sg~~d~~i~iw~~~-~~~~~~l-~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~w   95 (347)
                      .+.||++.|++++++ ++.+|||||.|++|++||+. +.+.+.+ .+|...|.+++|+|++.     +++++.|+++++|
T Consensus         7 ~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~-----~~~~~~d~~v~~~   81 (299)
T d1nr0a2           7 VRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD-----LFTVSWDDHLKVV   81 (299)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSC-----EEEEETTTEEEEE
T ss_pred             EcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccce-----eecccceeeEEEe
Confidence            467999999999998 56799999999999999975 6777766 47999999999998542     6778889999999


Q ss_pred             eccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCcccccccc
Q 036314           96 KFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLE  175 (347)
Q Consensus        96 d~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (347)
                      +........      .......|...+.+++|+++++++++++ ++.+++|+....                        
T Consensus        82 ~~~~~~~~~------~~~~~~~~~~~~~~~~~s~~g~~~~~~~-~~~i~~~~~~~~------------------------  130 (299)
T d1nr0a2          82 PAGGSGVDS------SKAVANKLSSQPLGLAVSADGDIAVAAC-YKHIAIYSHGKL------------------------  130 (299)
T ss_dssp             CSSSSSSCT------TSCCEEECSSCEEEEEECTTSSCEEEEE-SSEEEEEETTEE------------------------
T ss_pred             ccCCccccc------cccccccccccccccccccccccccccc-cccccccccccc------------------------
Confidence            986543211      1122345788899999999999777654 568999985321                        


Q ss_pred             ccccccccCCccceEEEEe-CCCCeEEEEecCCcEEEEECCCCceee--eeeeCeeeEEEEeeCCCCcEEEEecCCCcEE
Q 036314          176 GEAISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLS--DIFCGKALNCIDIGGEGSALIAAGGSDPILR  252 (347)
Q Consensus       176 ~~~~~~~~~h~~~v~~~~~-~~~~~l~s~s~dg~v~vwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~la~~~~d~~i~  252 (347)
                         .....  ...+.+++| |+++.|++++.|+.|++||+++++...  ...+...+.+++++++ +..+++++.|+.|+
T Consensus       131 ---~~~~~--~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~i~  204 (299)
T d1nr0a2         131 ---TEVPI--SYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNN-GAFLVATDQSRKVI  204 (299)
T ss_dssp             ---EEEEC--SSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTT-SSEEEEEETTSCEE
T ss_pred             ---ccccc--ccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccc
Confidence               11111  123456666 577889999999999999998765432  2334567899999765 46788999999999


Q ss_pred             EEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccce--eecC-CCCeEEEEeecCCCEE
Q 036314          253 IWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLS--VIDS-HKDKVLCADWWRGDSV  329 (347)
Q Consensus       253 iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~--~~~~-h~~~v~~~~~~~~~~l  329 (347)
                      +||+...........+.+|...|.+++|+|++. +|++|+.|+.|++||++++....  .... |...|.++.|+++++|
T Consensus       205 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l  283 (299)
T d1nr0a2         205 PYSVANNFELAHTNSWTFHTAKVACVSWSPDNV-RLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTI  283 (299)
T ss_dssp             EEEGGGTTEESCCCCCCCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTEE
T ss_pred             ccccccccccccccccccccccccccccccccc-ceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEECCCCEE
Confidence            999875433333456778999999999999986 59999999999999998865433  2233 4456778888889999


Q ss_pred             EEccCCceEEEeecc
Q 036314          330 ISGGVDSKLCVSSGV  344 (347)
Q Consensus       330 ~s~s~D~~v~vw~~~  344 (347)
                      +|||.|++|+||+.+
T Consensus       284 ~s~s~D~~i~iWdl~  298 (299)
T d1nr0a2         284 VSAGQDSNIKFWNVP  298 (299)
T ss_dssp             EEEETTSCEEEEECC
T ss_pred             EEEeCCCEEEEEecc
Confidence            999999999999864

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6e-38  Score=276.38  Aligned_cols=302  Identities=19%  Similarity=0.275  Sum_probs=216.8

Q ss_pred             CCCCcCCce-eeccCCCCCEEEEEecCCeEEEEcC-CCeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEe
Q 036314           19 EPSLHDDWV-SAVDGSNPGFILTGCYDNLGRVWKA-GGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWK   96 (347)
Q Consensus        19 ~~~~h~~~v-~~~~~~~~~~l~sg~~d~~i~iw~~-~~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd   96 (347)
                      .+.||.+.| +++++ ++++|||||.|++|++||. .+++++.|.+|.+.|.+++|+++ +    .|++|+.|++|++|+
T Consensus         7 tL~GH~~~vitc~~~-~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~----~l~s~s~D~~i~iw~   80 (355)
T d1nexb2           7 TLRGHMTSVITCLQF-EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-G----ILVSGSTDRTVRVWD   80 (355)
T ss_dssp             EEECCSSSCEEEEEE-ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT-T----EEEEEETTCCEEEEE
T ss_pred             EECCcCCCcEEEEEE-CCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCC-C----EEEEEeccccccccc
Confidence            367998875 77876 4679999999999999997 47889999999999999999873 2    589999999999999


Q ss_pred             ccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccc-----------------e
Q 036314           97 FDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQV-----------------S  159 (347)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~-----------------~  159 (347)
                      +...+...       ......+...+....+.+++..+++++.|++|++|++..........                 .
T Consensus        81 ~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (355)
T d1nexb2          81 IKKGCCTH-------VFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYF  153 (355)
T ss_dssp             TTTTEEEE-------EECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTE
T ss_pred             cccccccc-------ccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccce
Confidence            87654221       11122234445566788999999999999999999987643211000                 0


Q ss_pred             eeecc------------CCC--------ccccc-cccccccccccCCccceEEEEe-CCCCeEEEEecCCcEEEEECCCC
Q 036314          160 IKKRK------------GNN--------QVEEP-QLEGEAISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMG  217 (347)
Q Consensus       160 ~~~~~------------~~~--------~~~~~-~~~~~~~~~~~~h~~~v~~~~~-~~~~~l~s~s~dg~v~vwd~~~~  217 (347)
                      .....            ...        .+... ...+..+....++...+.++.+ +.+..+++++.|++|++||++++
T Consensus       154 ~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~  233 (355)
T d1nexb2         154 VGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENG  233 (355)
T ss_dssp             EEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTC
T ss_pred             eeeeeeccccccccccccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeecccc
Confidence            00000            000        00000 0012233445566677777776 57788999999999999999999


Q ss_pred             ceeeeeee-CeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCc
Q 036314          218 KDLSDIFC-GKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGK  296 (347)
Q Consensus       218 ~~~~~~~~-~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~  296 (347)
                      ..+..+.. ...+.++.+++   .++++++.|+.|++||++..     ...+..|...+.++.+.+.+..+|++| .|++
T Consensus       234 ~~~~~~~~h~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~g-~d~~  304 (355)
T d1nexb2         234 ELMYTLQGHTALVGLLRLSD---KFLVSAAADGSIRGWDANDY-----SRKFSYHHTNLSAITTFYVSDNILVSG-SENQ  304 (355)
T ss_dssp             CEEEEECCCSSCCCEEEECS---SEEEEECTTSEEEEEETTTC-----CEEEEEECTTCCCCCEEEECSSEEEEE-ETTE
T ss_pred             cccccccccccccccccccc---ceeeeeeccccccccccccc-----ceecccccCCceEEEEEcCCCCEEEEE-eCCE
Confidence            88777654 34678888743   58899999999999998742     234556777776665433334545554 5899


Q ss_pred             EEEEEcCCCccce-eecCCCCeEEEEeecCCCEEEEccCCceEEEee
Q 036314          297 VMLWDLRTAWPLS-VIDSHKDKVLCADWWRGDSVISGGVDSKLCVSS  342 (347)
Q Consensus       297 i~lwd~~~~~~~~-~~~~h~~~v~~~~~~~~~~l~s~s~D~~v~vw~  342 (347)
                      |+|||+++++.+. .+.+|.+.|++++|++...+++++.||+++||-
T Consensus       305 i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~~~~~~~s~dg~~~l~~  351 (355)
T d1nexb2         305 FNIYNLRSGKLVHANILKDADQIWSVNFKGKTLVAAVEKDGQSFLEI  351 (355)
T ss_dssp             EEEEETTTCCBCCSCTTTTCSEEEEEEEETTEEEEEEESSSCEEEEE
T ss_pred             EEEEECCCCCEEEEEecCCCCCEEEEEEcCCeEEEEEECCCcEEEEE
Confidence            9999999998875 467899999999999877788999999977763

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2e-37  Score=277.73  Aligned_cols=283  Identities=14%  Similarity=0.116  Sum_probs=216.5

Q ss_pred             CCceeeccCC-CCCEEEEEecCCeEEEEcCC-Ce--EEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccc
Q 036314           24 DDWVSAVDGS-NPGFILTGCYDNLGRVWKAG-GV--CTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDA   99 (347)
Q Consensus        24 ~~~v~~~~~~-~~~~l~sg~~d~~i~iw~~~-~~--~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~   99 (347)
                      .++|++++|+ ++.+||+|+.|+.|++||.. +.  +.+.|.+|.+.|.+++|+|++.    +|++++.|++|++||+..
T Consensus         7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~----~l~s~s~D~~i~vWd~~~   82 (371)
T d1k8kc_           7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSN----RIVTCGTDRNAYVWTLKG   82 (371)
T ss_dssp             SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTT----EEEEEETTSCEEEEEEET
T ss_pred             CCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCC----EEEEEECCCeEEEEeecc
Confidence            4679999998 56799999999999999974 33  5677999999999999999543    699999999999999976


Q ss_pred             cccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCcccccccccccc
Q 036314          100 EELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAI  179 (347)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (347)
                      ++.       +....+.+|..+|.+++|+|+++.|++|+.|++|++|+.+.....                     ....
T Consensus        83 ~~~-------~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~---------------------~~~~  134 (371)
T d1k8kc_          83 RTW-------KPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDW---------------------WVCK  134 (371)
T ss_dssp             TEE-------EEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTE---------------------EEEE
T ss_pred             ccc-------ccccccccccccccccccccccccceeecccCcceeeeeeccccc---------------------cccc
Confidence            532       234456789999999999999999999999999999987643210                     0112


Q ss_pred             ccccCCccceEEEEe-CCCCeEEEEecCCcEEEEECCCCce------------------eeeee-eCeeeEEEEeeCCCC
Q 036314          180 STLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKD------------------LSDIF-CGKALNCIDIGGEGS  239 (347)
Q Consensus       180 ~~~~~h~~~v~~~~~-~~~~~l~s~s~dg~v~vwd~~~~~~------------------~~~~~-~~~~~~~~~~~~~~~  239 (347)
                      .....|...|.++.| |++++|++++.|+++++||+.....                  +.... +...+.+++|+|+ +
T Consensus       135 ~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-g  213 (371)
T d1k8kc_         135 HIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSAN-G  213 (371)
T ss_dssp             EECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSS-S
T ss_pred             ccccccccccccccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecc-c
Confidence            234568889999998 5788999999999999999865321                  11111 1235788899765 5


Q ss_pred             cEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccce----------
Q 036314          240 ALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLS----------  309 (347)
Q Consensus       240 ~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~----------  309 (347)
                      ..+++++.|+.|++||++..   ..+..+..|...|.+++|+|++ .+|+ ++.|+.+++|..+......          
T Consensus       214 ~~l~s~~~d~~i~iwd~~~~---~~~~~~~~~~~~v~s~~fs~d~-~~la-~g~d~~~~~~~~~~~~~~~~~~~~~~~~~  288 (371)
T d1k8kc_         214 SRVAWVSHDSTVCLADADKK---MAVATLASETLPLLAVTFITES-SLVA-AGHDCFPVLFTYDSAAGKLSFGGRLDVPK  288 (371)
T ss_dssp             SEEEEEETTTEEEEEEGGGT---TEEEEEECSSCCEEEEEEEETT-EEEE-EETTSSCEEEEEETTTTEEEECCCCCCC-
T ss_pred             ccccccccCCcceEEeeecc---cceeeeecccccceeeeecCCC-CEEE-EEcCCceEEEEeeCCCceEEEeeeecCcc
Confidence            67899999999999998753   3577888999999999999998 4455 4557877777543211000          


Q ss_pred             -------------------------------eecCCCCeEEEEeecC---C--CEEEEccCCceEEEeecc
Q 036314          310 -------------------------------VIDSHKDKVLCADWWR---G--DSVISGGVDSKLCVSSGV  344 (347)
Q Consensus       310 -------------------------------~~~~h~~~v~~~~~~~---~--~~l~s~s~D~~v~vw~~~  344 (347)
                                                     ....|++.|.++.+.+   +  ..|+|+|.||+|+||+-.
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~  359 (371)
T d1k8kc_         289 QSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVR  359 (371)
T ss_dssp             -------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHH
T ss_pred             ccccccccceeeEecccceeEEeccccccceecccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeCC
Confidence                                           0013899999999853   2  259999999999999864

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.8e-35  Score=258.99  Aligned_cols=287  Identities=13%  Similarity=0.140  Sum_probs=216.6

Q ss_pred             CCceeeccCC-CCCEEEEEecCC-eEEEEcCC---CeEEEEeeccC-CceEEEEEeecCCCceEEEEEccCCCcEEEEec
Q 036314           24 DDWVSAVDGS-NPGFILTGCYDN-LGRVWKAG---GVCTHILEGHC-GAVSSVNIIKSDGLKYVTVATASKDQTLRLWKF   97 (347)
Q Consensus        24 ~~~v~~~~~~-~~~~l~sg~~d~-~i~iw~~~---~~~~~~l~~h~-~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~   97 (347)
                      ...+++++++ ++..||.++.+. .++.|+..   ......+.+|. ..|++++|+|..  ++.+|++|+.||+|++||+
T Consensus        17 ~~~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~--~g~~lasgs~Dg~i~iWd~   94 (325)
T d1pgua1          17 RNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIK--GSQYLCSGDESGKVIVWGW   94 (325)
T ss_dssp             TTCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSST--TCCEEEEEETTSEEEEEEE
T ss_pred             CCCeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCC--CCCEEEEEeCCCCEEEeee
Confidence            3445677776 466888776554 57788752   34466778875 679999999854  2347999999999999999


Q ss_pred             cccccccCccccceeeeeeccccceEEEEEeCCCCEEEEee--CCCcEEEEecCCCCCCCccceeeeccCCCcccccccc
Q 036314           98 DAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGS--WDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLE  175 (347)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs--~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (347)
                      ..++...... ......+..|..+|.+++|+++++.+++++  .|+.+++|+..++                        
T Consensus        95 ~~~~~~~~~~-~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~------------------------  149 (325)
T d1pgua1          95 TFDKESNSVE-VNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSG------------------------  149 (325)
T ss_dssp             EEEGGGTEEE-EEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTC------------------------
T ss_pred             cCCcceeeee-cccccccccccCcEEEEEECCCCCccceeeccccceEEEEeeccc------------------------
Confidence            7654322111 112234567899999999999999888765  4778999987643                        


Q ss_pred             ccccccccCCccceEEEEeC-CCC-eEEEEecCCcEEEEECCCCceeeeeee----CeeeEEEEeeCCCCcEEEEecCCC
Q 036314          176 GEAISTLVGHTQCVSSVVWP-QQE-TIYSASWDHSVRTWDVEMGKDLSDIFC----GKALNCIDIGGEGSALIAAGGSDP  249 (347)
Q Consensus       176 ~~~~~~~~~h~~~v~~~~~~-~~~-~l~s~s~dg~v~vwd~~~~~~~~~~~~----~~~~~~~~~~~~~~~~la~~~~d~  249 (347)
                       +.+..+.+|...|.+++|. +++ .+++++.|+.+++||.+..+.......    ...+.+++|+|+.+.++++++.|+
T Consensus       150 -~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~  228 (325)
T d1pgua1         150 -NSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDR  228 (325)
T ss_dssp             -CEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTC
T ss_pred             -ccceeeeecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceecccccccc
Confidence             3456678899999999984 444 478899999999999987765544432    245889999988788999999999


Q ss_pred             cEEEEeCCCCCCCCCeEEecCCCCCeeEEEeC---CCCCeEEEEEeCCCcEEEEEcCCCccceeecCCCCe----EEEEe
Q 036314          250 ILRIWDPRKPGTSAPVFQFSSHNSWISACKWH---NKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDK----VLCAD  322 (347)
Q Consensus       250 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s---~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h~~~----v~~~~  322 (347)
                      .|++||++..   ..+..+.+|...+..+.|+   |++. +|++++.|++|+|||++++++++.+..|...    ..++.
T Consensus       229 ~i~iwd~~~~---~~~~~l~~~~~~v~~~~~s~~~~dg~-~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  304 (325)
T d1pgua1         229 KISCFDGKSG---EFLKYIEDDQEPVQGGIFALSWLDSQ-KFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVV  304 (325)
T ss_dssp             CEEEEETTTC---CEEEECCBTTBCCCSCEEEEEESSSS-EEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEE
T ss_pred             ceeeeeeccc---cccccccccccccccceeeeeccCCC-EEEEEeCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEE
Confidence            9999998753   3467788888877665555   5664 5999999999999999999988887766543    23555


Q ss_pred             ecCCCEEEEccCCceEEEee
Q 036314          323 WWRGDSVISGGVDSKLCVSS  342 (347)
Q Consensus       323 ~~~~~~l~s~s~D~~v~vw~  342 (347)
                      |.++.+|+|+|.||+|+||+
T Consensus       305 ~~~~~~l~s~s~dg~i~vwd  324 (325)
T d1pgua1         305 ATGNGRIISLSLDGTLNFYE  324 (325)
T ss_dssp             EEETTEEEEEETTSCEEEEE
T ss_pred             ECCCCEEEEEECCCEEEEEE
Confidence            55667899999999999997

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.5e-35  Score=257.18  Aligned_cols=302  Identities=25%  Similarity=0.368  Sum_probs=210.9

Q ss_pred             CCCCCcCCcee-eccCCCCCEEEEEecCCeEEEEcC-CCeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEE
Q 036314           18 EEPSLHDDWVS-AVDGSNPGFILTGCYDNLGRVWKA-GGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLW   95 (347)
Q Consensus        18 ~~~~~h~~~v~-~~~~~~~~~l~sg~~d~~i~iw~~-~~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~w   95 (347)
                      ..+.||++.|. ++++ ++++|||||.|++|+|||. .+++++.+.+|.+.|.++.|.++      .|++++.|+++++|
T Consensus        10 ~~l~GH~~~V~s~~~~-~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~------~l~s~s~D~~~~~~   82 (342)
T d2ovrb2          10 KVLKGHDDHVITCLQF-CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN------IIISGSTDRTLKVW   82 (342)
T ss_dssp             EEEECSTTSCEEEEEE-ETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT------EEEEEETTSCEEEE
T ss_pred             EEECCcCCceEEEEEE-CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCC------ccccceeccccccc
Confidence            34679999885 5555 5789999999999999997 47889999999999999999762      68999999999999


Q ss_pred             eccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccc------eeeecc-----
Q 036314           96 KFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQV------SIKKRK-----  164 (347)
Q Consensus        96 d~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~------~~~~~~-----  164 (347)
                      +......         ......+...+....+  ....++.+..|+++.+|+..+........      ......     
T Consensus        83 ~~~~~~~---------~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (342)
T d2ovrb2          83 NAETGEC---------IHTLYGHTSTVRCMHL--HEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVV  151 (342)
T ss_dssp             ETTTTEE---------EEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEE
T ss_pred             ccccccc---------eecccccceeEeeeec--ccccccccccceeEEEeecccccceeeeecccccceeeccccceee
Confidence            9875432         1122233444443333  23456667777777777766543210000      000000     


Q ss_pred             ---CCCcccc-ccccccccccccCCccceEEEEeCCCCeEEEEecCCcEEEEECCCCceeeeeeeC-eeeEEEEeeCCCC
Q 036314          165 ---GNNQVEE-PQLEGEAISTLVGHTQCVSSVVWPQQETIYSASWDHSVRTWDVEMGKDLSDIFCG-KALNCIDIGGEGS  239 (347)
Q Consensus       165 ---~~~~~~~-~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~~  239 (347)
                         ....+.. .......+..+.+|...+..+.+ ++..+++++.||+|++||++.++.+..+..+ ..+.++++.+   
T Consensus       152 ~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~---  227 (342)
T d2ovrb2         152 SGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF-DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD---  227 (342)
T ss_dssp             EEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE-CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEET---
T ss_pred             eecCCCeEEEeecccceeeEEEcCcccccccccC-CCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecCC---
Confidence               0000000 00112334566777777666654 6788999999999999999998877766543 3466776643   


Q ss_pred             cEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceee-----cCC
Q 036314          240 ALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVI-----DSH  314 (347)
Q Consensus       240 ~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~-----~~h  314 (347)
                      .++++++.|+.|++||+..............|...+.++.++++   ++++|+.||+|++||+++++.++.+     .+|
T Consensus       228 ~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~  304 (342)
T d2ovrb2         228 NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKN---FVITSSDDGTVKLWDLKTGEFIRNLVTLESGGS  304 (342)
T ss_dssp             TEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECSS---EEEEEETTSEEEEEETTTCCEEEEEEECTTGGG
T ss_pred             CEEEEEcCCCEEEEEecccccccccccccceeeeceeecccCCC---eeEEEcCCCEEEEEECCCCCEEEEEecccCCCC
Confidence            48899999999999998753321112222346677888888764   6999999999999999999887766     368


Q ss_pred             CCeEEEEeecC-CCEEEEccCCce----EEEeecc
Q 036314          315 KDKVLCADWWR-GDSVISGGVDSK----LCVSSGV  344 (347)
Q Consensus       315 ~~~v~~~~~~~-~~~l~s~s~D~~----v~vw~~~  344 (347)
                      .+.|++++|+| +..||+|+.||+    |++|+..
T Consensus       305 ~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~  339 (342)
T d2ovrb2         305 GGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFD  339 (342)
T ss_dssp             TCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECC
T ss_pred             CCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCC
Confidence            88999999986 456899999986    9999864

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-34  Score=246.51  Aligned_cols=273  Identities=23%  Similarity=0.425  Sum_probs=209.1

Q ss_pred             CCCCcCCceeeccCCCCCEEEEEecCCeEEEEcCC-CeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEec
Q 036314           19 EPSLHDDWVSAVDGSNPGFILTGCYDNLGRVWKAG-GVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKF   97 (347)
Q Consensus        19 ~~~~h~~~v~~~~~~~~~~l~sg~~d~~i~iw~~~-~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~   97 (347)
                      ....|...|+|+++ ++++|||||.||+|||||.. +++++.|.+|.+.|.+++|.+      .+|++|+.|++|++|++
T Consensus        10 ~~~~~~~~V~c~~~-d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~~~------~~l~s~s~D~~i~~~~~   82 (293)
T d1p22a2          10 CRSETSKGVYCLQY-DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDE------RVIITGSSDSTVRVWDV   82 (293)
T ss_dssp             CCCSSCCCEEEEEC-CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEECCS------SEEEEEETTSCEEEEES
T ss_pred             ccCCCCCCEEEEEE-cCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeeccc------ceeeccccccccccccc
Confidence            35578899999987 57899999999999999974 788999999999999998733      37999999999999998


Q ss_pred             cccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCcccccccccc
Q 036314           98 DAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGE  177 (347)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (347)
                      ..+..         ......+...  ...+.+....++++..++.+++|+.......                      .
T Consensus        83 ~~~~~---------~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~  129 (293)
T d1p22a2          83 NTGEM---------LNTLIHHCEA--VLHLRFNNGMMVTCSKDRSIAVWDMASPTDI----------------------T  129 (293)
T ss_dssp             SSCCE---------EEEECCCCSC--EEEEECCTTEEEEEETTSCEEEEECSSSSCC----------------------E
T ss_pred             ccccc---------cccccccccc--cccccccccceeecccccceeEeeccccccc----------------------c
Confidence            76542         1122222222  2344566778999999999999998653211                      1


Q ss_pred             ccccccCCccceEEEEeCCCCeEEEEecCCcEEEEECCCCceeeeeeeC-eeeEEEEeeCCCCcEEEEecCCCcEEEEeC
Q 036314          178 AISTLVGHTQCVSSVVWPQQETIYSASWDHSVRTWDVEMGKDLSDIFCG-KALNCIDIGGEGSALIAAGGSDPILRIWDP  256 (347)
Q Consensus       178 ~~~~~~~h~~~v~~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~la~~~~d~~i~iwd~  256 (347)
                      ....+..|...+..+.+ ....+++++.|+.+++||+++++.+..+... ..+..+.+.   +..+++++.|+.|++||+
T Consensus       130 ~~~~~~~~~~~v~~~~~-~~~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~dg~i~i~d~  205 (293)
T d1p22a2         130 LRRVLVGHRAAVNVVDF-DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR---DRLVVSGSSDNTIRLWDI  205 (293)
T ss_dssp             EEEEECCCSSCEEEEEE-ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE---TTEEEEEETTSCEEEEET
T ss_pred             cccccccccccccccee-cccccccccCCCceeeecCCCCcEEEEEcccccccccccCC---CCeEEEecCCCEEEEEec
Confidence            12344567777776665 3457889999999999999998887766543 345555553   347889999999999999


Q ss_pred             CCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCC---------ccceeecCCCCeEEEEeecCCC
Q 036314          257 RKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTA---------WPLSVIDSHKDKVLCADWWRGD  327 (347)
Q Consensus       257 ~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~---------~~~~~~~~h~~~v~~~~~~~~~  327 (347)
                      +..   ..+..+.+|...+..+.+  ++ .+|++|+.||.|++||++.+         ..+.++.+|.+.|++++| +++
T Consensus       206 ~~~---~~~~~~~~~~~~v~~~~~--~~-~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~-d~~  278 (293)
T d1p22a2         206 ECG---ACLRVLEGHEELVRCIRF--DN-KRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF-DEF  278 (293)
T ss_dssp             TTC---CEEEEECCCSSCEEEEEC--CS-SEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE-CSS
T ss_pred             ccc---eeeeeecccceeeeeccc--cc-eEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEE-cCC
Confidence            753   346777888888876554  44 36999999999999997542         335678899999999999 467


Q ss_pred             EEEEccCCceEEEee
Q 036314          328 SVISGGVDSKLCVSS  342 (347)
Q Consensus       328 ~l~s~s~D~~v~vw~  342 (347)
                      +|+|||.|++|+||+
T Consensus       279 ~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         279 QIVSSSHDDTILIWD  293 (293)
T ss_dssp             CEEECCSSSEEEEEC
T ss_pred             EEEEEecCCEEEEeC
Confidence            899999999999996

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=3.6e-34  Score=250.44  Aligned_cols=239  Identities=17%  Similarity=0.215  Sum_probs=192.1

Q ss_pred             CCCcCCceeeccCC-CCCEEEEEecCCeEEEEcCCC---eEEEEeeccCCceEEEEEeecCCCceEEEEEccC--CCcEE
Q 036314           20 PSLHDDWVSAVDGS-NPGFILTGCYDNLGRVWKAGG---VCTHILEGHCGAVSSVNIIKSDGLKYVTVATASK--DQTLR   93 (347)
Q Consensus        20 ~~~h~~~v~~~~~~-~~~~l~sg~~d~~i~iw~~~~---~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~--Dg~v~   93 (347)
                      ..+|.+.|++++++ ++++||||+.||+|++||...   .....+.+|.+.|.+++|++++    ..|++++.  +..++
T Consensus        54 ~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~----~~l~~~~~~~~~~~~  129 (311)
T d1nr0a1          54 YTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSES----KRIAAVGEGRERFGH  129 (311)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTS----CEEEEEECCSSCSEE
T ss_pred             EcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccccccccccCccccccccccc----ccccccccccccccc
Confidence            46899999999998 567999999999999999742   3456789999999999999854    35777765  46699


Q ss_pred             EEeccccccccCccccceeeeeeccccceEEEEEeCCCCE-EEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccc
Q 036314           94 LWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNM-VCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEP  172 (347)
Q Consensus        94 ~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~-l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  172 (347)
                      +|+++.++         ....+.+|...|++++|+|++++ |++|+.|++|++||+++.                     
T Consensus       130 v~~~~~~~---------~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~---------------------  179 (311)
T d1nr0a1         130 VFLFDTGT---------SNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPF---------------------  179 (311)
T ss_dssp             EEETTTCC---------BCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTB---------------------
T ss_pred             cccccccc---------ccccccccccccccccccccceeeeccccccccccccccccc---------------------
Confidence            99998654         33457889999999999999984 889999999999998753                     


Q ss_pred             cccccccccccCCccceEEEEe-CCCCeEEEEecCCcEEEEECCCCceeeeeee--------CeeeEEEEeeCCCCcEEE
Q 036314          173 QLEGEAISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFC--------GKALNCIDIGGEGSALIA  243 (347)
Q Consensus       173 ~~~~~~~~~~~~h~~~v~~~~~-~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~la  243 (347)
                          +....+.+|...|.++.| |+++.+++++.|+.|++||++++.....+..        ...+.+++|+++ +.+|+
T Consensus       180 ----~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~-~~~l~  254 (311)
T d1nr0a1         180 ----KFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPD-GTKIA  254 (311)
T ss_dssp             ----EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTT-SSEEE
T ss_pred             ----ccccccccccccccccccCccccccccccccccccccccccccccccccccccccccccccccccccCCC-CCEEE
Confidence                234566789999999998 5778899999999999999998876655532        246889999765 46889


Q ss_pred             EecCCCcEEEEeCCCCCCCCCeEEecCCCC---CeeEEEeCCCCCeEEEEEeCCCcEEEEEcC
Q 036314          244 AGGSDPILRIWDPRKPGTSAPVFQFSSHNS---WISACKWHNKSWFHLISASYDGKVMLWDLR  303 (347)
Q Consensus       244 ~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~---~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~  303 (347)
                      +|+.|++|+|||++..   ..+.++..|..   .+.++.|+++   .|++++.||.|++||++
T Consensus       255 tgs~Dg~v~iwd~~t~---~~~~~l~~~~~~~~~~~~~~~~~~---~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         255 SASADKTIKIWNVATL---KVEKTIPVGTRIEDQQLGIIWTKQ---ALVSISANGFINFVNPE  311 (311)
T ss_dssp             EEETTSEEEEEETTTT---EEEEEEECCSSGGGCEEEEEECSS---CEEEEETTCCEEEEETT
T ss_pred             EEeCCCeEEEEECCCC---cEEEEEECCCCccceEEEEEecCC---EEEEEECCCEEEEEeCC
Confidence            9999999999998743   34566666653   4556777654   48999999999999974

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5.7e-34  Score=255.38  Aligned_cols=277  Identities=20%  Similarity=0.276  Sum_probs=209.3

Q ss_pred             EEEEEecCCeEEEEcCCC--e---EEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCcc----
Q 036314           37 FILTGCYDNLGRVWKAGG--V---CTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPK----  107 (347)
Q Consensus        37 ~l~sg~~d~~i~iw~~~~--~---~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~----  107 (347)
                      ..+.+..++...+|+...  .   .+....+|++.|++|+|+|++    .+|++|+ |++|++||+.+++++....    
T Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~H~~~V~~l~fs~dg----~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~  104 (388)
T d1erja_          30 DALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDG----EYLATGC-NKTTQVYRVSDGSLVARLSDDSA  104 (388)
T ss_dssp             TTSEEECSSCEEEECTTSCCCEEEEEEEEEECSSCCCEEEECTTS----SEEEEEC-BSCEEEEETTTCCEEEEECC---
T ss_pred             cccccCCCCcEEEeCCCCCcceeeeeEeeCCCCCcEEEEEECCCC----CEEEEEe-CCeEEEEEecccceEeeeccccc
Confidence            356788889999999641  1   223344799999999999844    3688886 8999999998775432111    


Q ss_pred             -----ccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccc
Q 036314          108 -----KIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTL  182 (347)
Q Consensus       108 -----~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (347)
                           .........+|...|.+++|+|++++|++|+.||+|++|+....                         +.+..+
T Consensus       105 ~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~-------------------------~~~~~~  159 (388)
T d1erja_         105 ANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENR-------------------------KIVMIL  159 (388)
T ss_dssp             --------------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTT-------------------------EEEEEE
T ss_pred             ccccccccccccccCCCCCEEEEEECCCCCcceeccccccccccccccc-------------------------cccccc
Confidence                 00111234568889999999999999999999999999997653                         234566


Q ss_pred             cCCccceEEEEe-CCCCeEEEEecCCcEEEEECCCCceeeeeeeCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCC
Q 036314          183 VGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGT  261 (347)
Q Consensus       183 ~~h~~~v~~~~~-~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~  261 (347)
                      .+|...|.++.+ +++..+++++.++.+++||.++..............++.+.+.++.+|++++.|+.|++||.+....
T Consensus       160 ~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~  239 (388)
T d1erja_         160 QGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFL  239 (388)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCE
T ss_pred             ccccccccccccccccccccccccceeeeeeeccccccccccccccccccccccCCCCCeEEEEcCCCeEEEeecccCcc
Confidence            789999999988 4667899999999999999998877666655556667777777888999999999999999875321


Q ss_pred             C----CCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCcc------------ceeecCCCCeEEEEeecC
Q 036314          262 S----APVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWP------------LSVIDSHKDKVLCADWWR  325 (347)
Q Consensus       262 ~----~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~------------~~~~~~h~~~v~~~~~~~  325 (347)
                      .    .......+|.+.|.+++|+|++. +|++++.|+.|++||++++..            ......|.+.|.+++|++
T Consensus       240 ~~~~~~~~~~~~~h~~~v~~l~~s~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  318 (388)
T d1erja_         240 VERLDSENESGTGHKDSVYSVVFTRDGQ-SVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQ  318 (388)
T ss_dssp             EEEEC------CCCSSCEEEEEECTTSS-EEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECG
T ss_pred             ceeeccccccccCCCCCEEEEEECCCCC-EEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECC
Confidence            1    11223457899999999999986 599999999999999986533            234567899999999985


Q ss_pred             -CCEEEEccCCceEEEeecc
Q 036314          326 -GDSVISGGVDSKLCVSSGV  344 (347)
Q Consensus       326 -~~~l~s~s~D~~v~vw~~~  344 (347)
                       +++|++|+.||+|+||+..
T Consensus       319 ~~~~l~sg~~dg~i~vwd~~  338 (388)
T d1erja_         319 NDEYILSGSKDRGVLFWDKK  338 (388)
T ss_dssp             GGCEEEEEETTSEEEEEETT
T ss_pred             CCCEEEEEeCCCEEEEEECC
Confidence             7789999999999999865

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.8e-34  Score=252.76  Aligned_cols=238  Identities=14%  Similarity=0.241  Sum_probs=197.4

Q ss_pred             CCCcCCceeeccCC-CCCEEEEEecCCeEEEEcCC---CeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEE
Q 036314           20 PSLHDDWVSAVDGS-NPGFILTGCYDNLGRVWKAG---GVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLW   95 (347)
Q Consensus        20 ~~~h~~~v~~~~~~-~~~~l~sg~~d~~i~iw~~~---~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~w   95 (347)
                      ..+|++.|++++++ ++++|++|+.|++|++||..   +.....+.+|...|..+.|++++    ..+++++.|+.|++|
T Consensus        93 ~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~l~s~~~d~~i~~~  168 (337)
T d1gxra_          93 CLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDS----KVCFSCCSDGNIAVW  168 (337)
T ss_dssp             CSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTS----SEEEEEETTSCEEEE
T ss_pred             ecCCCCcEEEEEEcCCCCEEEEeeccccccccccccccccccccccccccccccccccccc----ccccccccccccccc
Confidence            45899999999998 56799999999999999974   34567788999999999998844    368999999999999


Q ss_pred             eccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCcccccccc
Q 036314           96 KFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLE  175 (347)
Q Consensus        96 d~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (347)
                      ++.+++         ......+|..+|.+++|++++..+++++.|++|++||+++..                       
T Consensus       169 ~~~~~~---------~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~-----------------------  216 (337)
T d1gxra_         169 DLHNQT---------LVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGR-----------------------  216 (337)
T ss_dssp             ETTTTE---------EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE-----------------------
T ss_pred             cccccc---------ccccccccccccccccccccccccccccccccccccccccce-----------------------
Confidence            987654         345567899999999999999999999999999999987532                       


Q ss_pred             ccccccccCCccceEEEEe-CCCCeEEEEecCCcEEEEECCCCceeeeeeeCeeeEEEEeeCCCCcEEEEecCCCcEEEE
Q 036314          176 GEAISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEGSALIAAGGSDPILRIW  254 (347)
Q Consensus       176 ~~~~~~~~~h~~~v~~~~~-~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~d~~i~iw  254 (347)
                        .+.. ..|...|.+++| ++++.|++++.|+.+++||++.+.......+...+.+++++++ +.+|++++.|+.|++|
T Consensus       217 --~~~~-~~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~v~~s~~-g~~l~s~s~Dg~i~iw  292 (337)
T d1gxra_         217 --QLQQ-HDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYC-GKWFVSTGKDNLLNAW  292 (337)
T ss_dssp             --EEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEECTT-SSEEEEEETTSEEEEE
T ss_pred             --eecc-cccccceEEEEEcccccccceeccccccccccccccccccccccccccceEEECCC-CCEEEEEeCCCeEEEE
Confidence              1222 236778999998 5778899999999999999998876655555667899999765 4688899999999999


Q ss_pred             eCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEc
Q 036314          255 DPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDL  302 (347)
Q Consensus       255 d~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~  302 (347)
                      |+...   ..+..+ .|.+.|.+++|+|++. +|++|+.|++|+|||+
T Consensus       293 d~~~~---~~~~~~-~~~~~v~~~~~s~d~~-~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         293 RTPYG---ASIFQS-KESSSVLSCDISVDDK-YIVTGSGDKKATVYEV  335 (337)
T ss_dssp             ETTTC---CEEEEE-ECSSCEEEEEECTTSC-EEEEEETTSCEEEEEE
T ss_pred             ECCCC---CEEEEc-cCCCCEEEEEEeCCCC-EEEEEeCCCeEEEEEE
Confidence            98753   234443 5888999999999985 5999999999999997

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3.3e-34  Score=256.61  Aligned_cols=244  Identities=16%  Similarity=0.205  Sum_probs=195.3

Q ss_pred             CCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcE
Q 036314           64 CGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTI  143 (347)
Q Consensus        64 ~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I  143 (347)
                      -.+|++++|+|++    ..||+|+.|+.|++||+++++.       .....+.+|.++|.+++|+|++++|++|+.|++|
T Consensus         7 ~~pIt~~~~s~dg----~~la~~~~~~~i~iw~~~~~~~-------~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i   75 (371)
T d1k8kc_           7 VEPISCHAWNKDR----TQIAICPNNHEVHIYEKSGNKW-------VQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNA   75 (371)
T ss_dssp             SSCCCEEEECTTS----SEEEEECSSSEEEEEEEETTEE-------EEEEEEECCSSCEEEEEEETTTTEEEEEETTSCE
T ss_pred             CCCeEEEEECCCC----CEEEEEeCCCEEEEEECCCCCE-------EEEEEecCCCCCEEEEEECCCCCEEEEEECCCeE
Confidence            3679999999954    3789999999999999876542       3566789999999999999999999999999999


Q ss_pred             EEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEe-CCCCeEEEEecCCcEEEEECCCCceeee
Q 036314          144 SLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSD  222 (347)
Q Consensus       144 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~l~s~s~dg~v~vwd~~~~~~~~~  222 (347)
                      +|||+.+..                       ......+.+|...|.++.| |+++.|++++.|+++++|++........
T Consensus        76 ~vWd~~~~~-----------------------~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~  132 (371)
T d1k8kc_          76 YVWTLKGRT-----------------------WKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWV  132 (371)
T ss_dssp             EEEEEETTE-----------------------EEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEE
T ss_pred             EEEeecccc-----------------------cccccccccccccccccccccccccceeecccCcceeeeeeccccccc
Confidence            999986431                       1123345678889999998 6788999999999999999876543322


Q ss_pred             ee-----eCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCC---------------CCCeEEecCCCCCeeEEEeCC
Q 036314          223 IF-----CGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGT---------------SAPVFQFSSHNSWISACKWHN  282 (347)
Q Consensus       223 ~~-----~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~---------------~~~~~~~~~h~~~v~~v~~s~  282 (347)
                      ..     ....+.+++++|+ +.+|++|+.|+.+++||+.....               ........+|...|.+++|+|
T Consensus       133 ~~~~~~~~~~~v~~v~~~p~-~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  211 (371)
T d1k8kc_         133 CKHIKKPIRSTVLSLDWHPN-SVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSA  211 (371)
T ss_dssp             EEEECTTCCSCEEEEEECTT-SSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECS
T ss_pred             cccccccccccccccccccc-ccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeec
Confidence            21     2346789999764 56889999999999999753210               113456678999999999999


Q ss_pred             CCCeEEEEEeCCCcEEEEEcCCCccceeecCCCCeEEEEeecCCCEEEEccCCceEEEeec
Q 036314          283 KSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKVLCADWWRGDSVISGGVDSKLCVSSG  343 (347)
Q Consensus       283 ~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~D~~v~vw~~  343 (347)
                      ++. +|++++.|++|++||+++++.+..+..|..+|.+++|+++..+++++.|+.+++|..
T Consensus       212 ~g~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~d~~~la~g~d~~~~~~~~  271 (371)
T d1k8kc_         212 NGS-RVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTY  271 (371)
T ss_dssp             SSS-EEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEETTSSCEEEEE
T ss_pred             ccc-cccccccCCcceEEeeecccceeeeecccccceeeeecCCCCEEEEEcCCceEEEEe
Confidence            986 599999999999999999999999999999999999986555444555887777653

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=6.2e-34  Score=246.24  Aligned_cols=255  Identities=26%  Similarity=0.404  Sum_probs=214.7

Q ss_pred             EEEcCCCeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeeeeccccceEEEEE
Q 036314           48 RVWKAGGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAA  127 (347)
Q Consensus        48 ~iw~~~~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~  127 (347)
                      |.|.+.....+.|.||.+.|++|+|+|++    .+|+||+.||+|++||+.+++         ...++.+|..+|.++++
T Consensus         1 k~w~p~~~~~~~L~GH~~~I~~l~~sp~~----~~l~s~s~Dg~i~iWd~~~~~---------~~~~~~~h~~~V~~~~~   67 (317)
T d1vyhc1           1 KEWIPRPPEKYALSGHRSPVTRVIFHPVF----SVMVSASEDATIKVWDYETGD---------FERTLKGHTDSVQDISF   67 (317)
T ss_dssp             CCCCCCSSCSCEEECCSSCEEEEEECSSS----SEEEEEESSSCEEEEETTTCC---------CCEEECCCSSCEEEEEE
T ss_pred             CccCCCCCccEEEcCCCCCeEEEEEcCCC----CEEEEEeCCCeEEEEECCCCC---------EEEEEeCCCCcEEEEee
Confidence            35766665667899999999999999854    379999999999999998764         34578899999999999


Q ss_pred             eCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEe-CCCCeEEEEecC
Q 036314          128 ETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW-PQQETIYSASWD  206 (347)
Q Consensus       128 s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~l~s~s~d  206 (347)
                      ++++.++++++.++++.+|+.....                         ....+.+|...+.++.+ ++++.+++++.|
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  122 (317)
T d1vyhc1          68 DHSGKLLASCSADMTIKLWDFQGFE-------------------------CIRTMHGHDHNVSSVSIMPNGDHIVSASRD  122 (317)
T ss_dssp             CTTSSEEEEEETTSCCCEEETTSSC-------------------------EEECCCCCSSCEEEEEECSSSSEEEEEETT
T ss_pred             ecccccccccccccccccccccccc-------------------------cccccccccccceeeeccCCCceEEeeccC
Confidence            9999999999999999999876431                         23345667778888887 577889999999


Q ss_pred             CcEEEEECCCCceeeeeee-CeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCC
Q 036314          207 HSVRTWDVEMGKDLSDIFC-GKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSW  285 (347)
Q Consensus       207 g~v~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~  285 (347)
                      +.+++||+++++.+..+.. ...+.++++.++ +.+|++++.|+.|++|+++..   .....+.+|...+.++.|+|+..
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~d~~v~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~  198 (317)
T d1vyhc1         123 KTIKMWEVQTGYCVKTFTGHREWVRMVRPNQD-GTLIASCSNDQTVRVWVVATK---ECKAELREHRHVVECISWAPESS  198 (317)
T ss_dssp             SEEEEEETTTCCEEEEEECCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTC---CEEEEECCCSSCEEEEEECCSCG
T ss_pred             cceeEeecccceeeeEEccCCCcceeeecccC-CCEEEEEeCCCeEEEEeeccc---eeeEEEecCCCCceEEEEeeccc
Confidence            9999999999888777654 345778888654 568899999999999998753   34677889999999999988642


Q ss_pred             -------------------eEEEEEeCCCcEEEEEcCCCccceeecCCCCeEEEEeecC-CCEEEEccCCceEEEeecc
Q 036314          286 -------------------FHLISASYDGKVMLWDLRTAWPLSVIDSHKDKVLCADWWR-GDSVISGGVDSKLCVSSGV  344 (347)
Q Consensus       286 -------------------~~l~s~s~D~~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~l~s~s~D~~v~vw~~~  344 (347)
                                         .++++++.|+.|++||+++++++.++.+|.+.|.++.|+| +++|++|+.||+|+||+..
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~  277 (317)
T d1vyhc1         199 YSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYK  277 (317)
T ss_dssp             GGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCT
T ss_pred             cceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence                               3589999999999999999999999999999999999985 6689999999999999865

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=7.5e-34  Score=244.69  Aligned_cols=266  Identities=17%  Similarity=0.211  Sum_probs=200.3

Q ss_pred             CCCcCCceeeccCCCCCEEEEEecCCeEEEEcCCCeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccc
Q 036314           20 PSLHDDWVSAVDGSNPGFILTGCYDNLGRVWKAGGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDA   99 (347)
Q Consensus        20 ~~~h~~~v~~~~~~~~~~l~sg~~d~~i~iw~~~~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~   99 (347)
                      ..||.++|+++++++   |+|||.||+|++||...    ...+|...|.++.+.+..     .+++++.|++|++|++..
T Consensus         9 l~gH~~~I~~l~~s~---l~sgs~Dg~v~~Wd~~~----~~~~h~~~V~~~~~~~~~-----~~~s~s~D~~v~~w~~~~   76 (287)
T d1pgua2           9 ISGHNKGITALTVNP---LISGSYDGRIMEWSSSS----MHQDHSNLIVSLDNSKAQ-----EYSSISWDDTLKVNGITK   76 (287)
T ss_dssp             ECCCSSCEEEEETTT---TEEEETTSCEEETTTTE----EECCCCSCEEEEECCSTT-----CCEEEETTTEEEETTEEE
T ss_pred             ECCCCCceEEEEECc---EEEEeCCCeEEEEECCC----CCCCCCCCEEEEEecCCC-----eEEEEeeccccccccccc
Confidence            469999999999975   99999999999999753    246899999999987632     478999999999999754


Q ss_pred             cccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCcccccccccccc
Q 036314          100 EELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAI  179 (347)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (347)
                      .+                +...+..+++++++..++++ .++.+.+|+..+...                         .
T Consensus        77 ~~----------------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-------------------------~  114 (287)
T d1pgua2          77 HE----------------FGSQPKVASANNDGFTAVLT-NDDDLLILQSFTGDI-------------------------I  114 (287)
T ss_dssp             EE----------------CSSCEEEEEECSSSEEEEEE-TTSEEEEEETTTCCE-------------------------E
T ss_pred             cc----------------cccceeeeeeccCCceEEEe-ecccceeeeccceee-------------------------e
Confidence            22                23446678888888777765 455678887654321                         1


Q ss_pred             ccccCCccceEEEEeCCCCeEEEEecC-CcEEEEECCCCceeeeee--eCeeeEEEEeeCCCCcEEEEecCCCcEEEEeC
Q 036314          180 STLVGHTQCVSSVVWPQQETIYSASWD-HSVRTWDVEMGKDLSDIF--CGKALNCIDIGGEGSALIAAGGSDPILRIWDP  256 (347)
Q Consensus       180 ~~~~~h~~~v~~~~~~~~~~l~s~s~d-g~v~vwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~  256 (347)
                      ..+.. ...+.++. +++..++.++.| +.+++|++........+.  ....+.+++++++ +.+|++|+.|+.|++||+
T Consensus       115 ~~~~~-~~~~~~~~-~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~g~~dg~i~i~d~  191 (287)
T d1pgua2         115 KSVRL-NSPGSAVS-LSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPS-ETYIAAGDVMGKILLYDL  191 (287)
T ss_dssp             EEEEC-SSCEEEEE-ECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTT-SSEEEEEETTSCEEEEET
T ss_pred             eeccc-cceeeeee-ccCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccC-ccccccccccccccceee
Confidence            12221 12233333 455666666666 579999987655444333  2346889999765 568899999999999998


Q ss_pred             CCCCCCCCeEEecCCCCCeeEEEeCCCC---------CeEEEEEeCCCcEEEEEcCCC-ccceeecCCCCeEEEEeecCC
Q 036314          257 RKPGTSAPVFQFSSHNSWISACKWHNKS---------WFHLISASYDGKVMLWDLRTA-WPLSVIDSHKDKVLCADWWRG  326 (347)
Q Consensus       257 ~~~~~~~~~~~~~~h~~~v~~v~~s~~~---------~~~l~s~s~D~~i~lwd~~~~-~~~~~~~~h~~~v~~~~~~~~  326 (347)
                      ....  .....+.+|...|.+++|+|.+         ..+|++|+.|++|++||++++ +.+..+.+|.+.|.++.|+|+
T Consensus       192 ~~~~--~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~  269 (287)
T d1pgua2         192 QSRE--VKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETP  269 (287)
T ss_dssp             TTTE--EEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEET
T ss_pred             cccc--cccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCC
Confidence            7532  1223467899999999999854         246999999999999999774 556677899999999999988


Q ss_pred             CEEEEccCCceEEEeecc
Q 036314          327 DSVISGGVDSKLCVSSGV  344 (347)
Q Consensus       327 ~~l~s~s~D~~v~vw~~~  344 (347)
                      .+|+|+|.|++|++|+.+
T Consensus       270 ~~l~s~g~D~~v~iW~i~  287 (287)
T d1pgua2         270 STLVSSGADACIKRWNVV  287 (287)
T ss_dssp             TEEEEEETTSCEEEEEEC
T ss_pred             CEEEEEECCCeEEEEEEC
Confidence            889999999999999854

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=8.3e-33  Score=249.38  Aligned_cols=315  Identities=16%  Similarity=0.211  Sum_probs=211.8

Q ss_pred             CCCCCcCCceeeccCCCCCEEEEEecCCeEEEEcCCC-------eEEEEeeccCCceEEEE---EeecCCCceEEEEEcc
Q 036314           18 EEPSLHDDWVSAVDGSNPGFILTGCYDNLGRVWKAGG-------VCTHILEGHCGAVSSVN---IIKSDGLKYVTVATAS   87 (347)
Q Consensus        18 ~~~~~h~~~v~~~~~~~~~~l~sg~~d~~i~iw~~~~-------~~~~~l~~h~~~V~~v~---~~~~~~~~~~~l~s~s   87 (347)
                      +...+|++.|.+++++ +++|+|+|.|++||+||...       ........|...+..+.   ..+..+.....+++++
T Consensus         8 ~~~~~H~~~I~~v~~~-~~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~   86 (393)
T d1sq9a_           8 NAGKAHDADIFSVSAC-NSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTS   86 (393)
T ss_dssp             EESSCSSSCEEEEEEC-SSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEE
T ss_pred             ecCCcccCccEEEEEe-CCEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEe
Confidence            4467999999999976 47999999999999998521       11223334554443333   2233333456788999


Q ss_pred             CCCcEEEEeccccccccCccccceee--eeeccccceEEEEEeCC-----CCEEEEeeCCCcEEEEecCCCCCCCcccee
Q 036314           88 KDQTLRLWKFDAEELVNHPKKIRSFK--ILRGHKASVHSIAAETS-----GNMVCSGSWDCTISLWRTNDSDAAGNQVSI  160 (347)
Q Consensus        88 ~Dg~v~~wd~~~~~~~~~~~~~~~~~--~~~~h~~~V~~v~~s~~-----~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~  160 (347)
                      .||+|++|++.......... .....  ....+...+..+++.++     +.++++++.|++|++|++........... 
T Consensus        87 ~dg~v~~w~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~-  164 (393)
T d1sq9a_          87 FSGDLLFYRITREDETKKVI-FEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLT-  164 (393)
T ss_dssp             TTSCEEEEEEEECTTTCCEE-EEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTT-
T ss_pred             CCCcEEEEEccCCCceeeee-ccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceee-
Confidence            99999999986543211100 00000  11234556777777665     46889999999999999754321000000 


Q ss_pred             eeccCCCccccccccccccccccCCccceEEEEeCCCCeEEEEecCCcEEEEECCCCceeeeeee-------CeeeEEEE
Q 036314          161 KKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWPQQETIYSASWDHSVRTWDVEMGKDLSDIFC-------GKALNCID  233 (347)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~-------~~~~~~~~  233 (347)
                            ..................+...+.+++|+++.+|++++.|++|+|||+++++.+..+..       ..++.+++
T Consensus       165 ------~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~  238 (393)
T d1sq9a_         165 ------LNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVK  238 (393)
T ss_dssp             ------TCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEE
T ss_pred             ------eeeccceecccceecccCCCCcEEEEEECCCCEEEEEeCCCcEEEEeecccccccccccccccccccceEEEcc
Confidence                  00000000001122233455668888987667999999999999999999887765542       34789999


Q ss_pred             eeCCCCcEEEEecCCCc---EEEEeCCCCCC----------CCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEE
Q 036314          234 IGGEGSALIAAGGSDPI---LRIWDPRKPGT----------SAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLW  300 (347)
Q Consensus       234 ~~~~~~~~la~~~~d~~---i~iwd~~~~~~----------~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lw  300 (347)
                      |+|+ +.+|++|+.|++   |++||++....          ......+.+|.++|.+++|+|++. +|+|||.|++|+||
T Consensus       239 ~spd-g~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~-~l~S~s~D~~v~vW  316 (393)
T d1sq9a_         239 FSPQ-GSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGE-TLCSAGWDGKLRFW  316 (393)
T ss_dssp             ECSS-TTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSS-EEEEEETTSEEEEE
T ss_pred             cccc-cceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCC-eeEEECCCCEEEEE
Confidence            9765 568899988874   99999874321          011223458999999999999986 69999999999999


Q ss_pred             EcCCCccceeecCCCCe---------------------EEEEeecC-----------CCEEEEccCCceEEEeec
Q 036314          301 DLRTAWPLSVIDSHKDK---------------------VLCADWWR-----------GDSVISGGVDSKLCVSSG  343 (347)
Q Consensus       301 d~~~~~~~~~~~~h~~~---------------------v~~~~~~~-----------~~~l~s~s~D~~v~vw~~  343 (347)
                      |+++++.++++.+|.+.                     ++++.|.+           ...|++++.|+.|++|+-
T Consensus       317 d~~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ir~~~~  391 (393)
T d1sq9a_         317 DVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFRE  391 (393)
T ss_dssp             ETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEE
T ss_pred             ECCCCCEEEEECCcCCcccCCccEEEECCCCCEEEEcccceEEECccCceeccccCCCCEEEEEEcCCeEEEEeC
Confidence            99999999999988643                     45666632           134889999999999973

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.6e-32  Score=237.57  Aligned_cols=248  Identities=15%  Similarity=0.276  Sum_probs=188.5

Q ss_pred             CeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeee-eccccceEEEEEeCCCC
Q 036314           54 GVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKIL-RGHKASVHSIAAETSGN  132 (347)
Q Consensus        54 ~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~-~~h~~~V~~v~~s~~~~  132 (347)
                      |...+++.||.+.|++++|+|++    .+|+||+.||+|++||+++++.         ...+ .+|...|.+++|+|+++
T Consensus         2 g~~~~~~~GH~~~V~~l~~s~dg----~~l~s~s~Dg~v~vWd~~~~~~---------~~~~~~~h~~~v~~v~~~~~g~   68 (299)
T d1nr0a2           2 GSIDQVRYGHNKAITALSSSADG----KTLFSADAEGHINSWDISTGIS---------NRVFPDVHATMITGIKTTSKGD   68 (299)
T ss_dssp             TEEEEEECCCSSCEEEEEECTTS----SEEEEEETTSCEEEEETTTCCE---------EECSSCSCSSCEEEEEECTTSC
T ss_pred             CccceEcCCCCCCcEEEEECCCC----CEEEEEcCCCeEEEEECCCCcE---------EEEEcCCCCCcEEEEEeeccce
Confidence            56778999999999999999854    4799999999999999987643         2333 47999999999999987


Q ss_pred             EEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEeCCCCeEEEEecCCcEEEE
Q 036314          133 MVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWPQQETIYSASWDHSVRTW  212 (347)
Q Consensus       133 ~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~dg~v~vw  212 (347)
                       +++++.|+++++|+........                      .......+...+.++++..+..++.++.++.+++|
T Consensus        69 -~~~~~~d~~v~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~  125 (299)
T d1nr0a2          69 -LFTVSWDDHLKVVPAGGSGVDS----------------------SKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIY  125 (299)
T ss_dssp             -EEEEETTTEEEEECSSSSSSCT----------------------TSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEE
T ss_pred             -eecccceeeEEEeccCCccccc----------------------ccccccccccccccccccccccccccccccccccc
Confidence             4567889999999876432110                      01112235566778887544444455567789999


Q ss_pred             ECCCCceeeeeeeCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEe
Q 036314          213 DVEMGKDLSDIFCGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISAS  292 (347)
Q Consensus       213 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s  292 (347)
                      +...   ...........+++++++ +.++++|+.|+.|++||++... . .......|.+.|.+++|+|++. +|++++
T Consensus       126 ~~~~---~~~~~~~~~~~~~~~s~~-~~~l~~g~~dg~i~~~d~~~~~-~-~~~~~~~~~~~i~~~~~~~~~~-~l~~~~  198 (299)
T d1nr0a2         126 SHGK---LTEVPISYNSSCVALSND-KQFVAVGGQDSKVHVYKLSGAS-V-SEVKTIVHPAEITSVAFSNNGA-FLVATD  198 (299)
T ss_dssp             ETTE---EEEEECSSCEEEEEECTT-SCEEEEEETTSEEEEEEEETTE-E-EEEEEEECSSCEEEEEECTTSS-EEEEEE
T ss_pred             cccc---cccccccccccccccccc-cccccccccccccccccccccc-c-cccccccccccccccccccccc-cccccc
Confidence            9542   233334456778888664 5688999999999999987432 1 1234457899999999999986 599999


Q ss_pred             CCCcEEEEEcCCCccc---eeecCCCCeEEEEeecC-CCEEEEccCCceEEEeecc
Q 036314          293 YDGKVMLWDLRTAWPL---SVIDSHKDKVLCADWWR-GDSVISGGVDSKLCVSSGV  344 (347)
Q Consensus       293 ~D~~i~lwd~~~~~~~---~~~~~h~~~v~~~~~~~-~~~l~s~s~D~~v~vw~~~  344 (347)
                      .|+.|++||++++...   ..+.+|.+.|.+++|+| +++|++|+.|++|+||+..
T Consensus       199 ~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~  254 (299)
T d1nr0a2         199 QSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMN  254 (299)
T ss_dssp             TTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             cccccccccccccccccccccccccccccccccccccccceEEEcCCCEEEEEECC
Confidence            9999999999876543   45678999999999985 7789999999999999854

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.5e-31  Score=232.91  Aligned_cols=251  Identities=21%  Similarity=0.299  Sum_probs=201.5

Q ss_pred             eEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEE
Q 036314           55 VCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMV  134 (347)
Q Consensus        55 ~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l  134 (347)
                      ...++|.||.+.|++++|+|++    .+|+||+.||+|++||+.+++         .+..+.+|..+|.+++|+|+++++
T Consensus        46 ~~~~tL~GH~~~I~~l~~s~~~----~~l~sgs~Dg~v~iWd~~~~~---------~~~~~~~~~~~v~~v~~~~~~~~l  112 (340)
T d1tbga_          46 RTRRTLRGHLAKIYAMHWGTDS----RLLVSASQDGKLIIWDSYTTN---------KVHAIPLRSSWVMTCAYAPSGNYV  112 (340)
T ss_dssp             CEEEEECCCSSCEEEEEECTTS----SEEEEEETTTEEEEEETTTTE---------EEEEEECSCSCEEEEEECTTSSEE
T ss_pred             eeeEEECCCCCCEEEEEECCCC----CEEEEEECCCceeeeecccce---------eEEEEecccccEEeeEeeccceee
Confidence            3567899999999999999854    379999999999999997664         456788999999999999999999


Q ss_pred             EEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEeCCCCeEEEEecCCcEEEEEC
Q 036314          135 CSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWPQQETIYSASWDHSVRTWDV  214 (347)
Q Consensus       135 ~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~dg~v~vwd~  214 (347)
                      ++|+.|+++++|+.......                     ......+.+|...........+..+.....|.....++.
T Consensus       113 ~~~~~d~~i~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (340)
T d1tbga_         113 ACGGLDNICSIYNLKTREGN---------------------VRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDI  171 (340)
T ss_dssp             EEEETTCCEEEEESSSSCSC---------------------CCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEET
T ss_pred             eeecccceeecccccccccc---------------------cccceeccccccccccccccccccccccccccccccccc
Confidence            99999999999987653221                     112334566776666666666678888899999999988


Q ss_pred             CCCceeeeeee-CeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeC
Q 036314          215 EMGKDLSDIFC-GKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASY  293 (347)
Q Consensus       215 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~  293 (347)
                      ........... ...+.+..+. +...++++++.|+.|++||++..   .++..+.+|.+.|.+++|+|++. +|++|+.
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~v~i~d~~~~---~~~~~~~~h~~~i~~v~~~p~~~-~l~s~s~  246 (340)
T d1tbga_         172 ETGQQTTTFTGHTGDVMSLSLA-PDTRLFVSGACDASAKLWDVREG---MCRQTFTGHESDINAICFFPNGN-AFATGSD  246 (340)
T ss_dssp             TTTEEEEEEECCSSCEEEEEEC-TTSSEEEEEETTTEEEEEETTTT---EEEEEECCCSSCEEEEEECTTSS-EEEEEET
T ss_pred             ccccccccccccceeEeeeccc-cccceeEEeecCceEEEEECCCC---cEEEEEeCCCCCeEEEEECCCCC-EEEEEeC
Confidence            76654443332 3345555554 45568889999999999998753   35778899999999999999986 5999999


Q ss_pred             CCcEEEEEcCCCccceee--cCCCCeEEEEeecC-CCEEEEccCCceEEEeecc
Q 036314          294 DGKVMLWDLRTAWPLSVI--DSHKDKVLCADWWR-GDSVISGGVDSKLCVSSGV  344 (347)
Q Consensus       294 D~~i~lwd~~~~~~~~~~--~~h~~~v~~~~~~~-~~~l~s~s~D~~v~vw~~~  344 (347)
                      |+.|++||++....+..+  ..|...|.++.|++ +++|++|+.||+|+||+..
T Consensus       247 d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~  300 (340)
T d1tbga_         247 DATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL  300 (340)
T ss_dssp             TSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETT
T ss_pred             CCeEEEEeecccccccccccccccCceEEEEECCCCCEEEEEECCCEEEEEECC
Confidence            999999999988766654  45677899999985 7789999999999999865

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.4e-32  Score=236.74  Aligned_cols=291  Identities=11%  Similarity=0.094  Sum_probs=203.7

Q ss_pred             CCCCcCCceeeccCC-CCCEEEEEecCCeEEEEcCC--C--eEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEE
Q 036314           19 EPSLHDDWVSAVDGS-NPGFILTGCYDNLGRVWKAG--G--VCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLR   93 (347)
Q Consensus        19 ~~~~h~~~v~~~~~~-~~~~l~sg~~d~~i~iw~~~--~--~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~   93 (347)
                      ...+|++.|++++|+ ++.+|||||.|++|||||..  .  .......+|.++|.+++|++.++   ..|++|+.|++|+
T Consensus         6 ~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~---~~l~sg~~d~~v~   82 (342)
T d1yfqa_           6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTD---LQIYVGTVQGEIL   82 (342)
T ss_dssp             CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSS---EEEEEEETTSCEE
T ss_pred             cCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCC---CEEEEccccccee
Confidence            467899999999998 56799999999999999963  2  22334557999999999998643   4799999999999


Q ss_pred             EEeccccccccCccccceeeeeec-cccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccc
Q 036314           94 LWKFDAEELVNHPKKIRSFKILRG-HKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEP  172 (347)
Q Consensus        94 ~wd~~~~~~~~~~~~~~~~~~~~~-h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  172 (347)
                      +|++.....         ...... +........+.++...+++++.|+++++||++........               
T Consensus        83 ~w~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~---------------  138 (342)
T d1yfqa_          83 KVDLIGSPS---------FQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIA---------------  138 (342)
T ss_dssp             EECSSSSSS---------EEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEE---------------
T ss_pred             eeecccccc---------cccccccccccccccccccccccccccccccccceeeccccccceee---------------
Confidence            999876532         112222 3333445566778889999999999999997543211100               


Q ss_pred             cccccccccccCC--ccceEEEEe-CCCCeEEEEecCCcEEEEECCCCceeeeee----eCeeeEEEEeeCCCCcEEEEe
Q 036314          173 QLEGEAISTLVGH--TQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIF----CGKALNCIDIGGEGSALIAAG  245 (347)
Q Consensus       173 ~~~~~~~~~~~~h--~~~v~~~~~-~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~----~~~~~~~~~~~~~~~~~la~~  245 (347)
                            ......+  ......+.+ +.+..+++++.|+.+++||++.........    ......+....+.+...++++
T Consensus       139 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (342)
T d1yfqa_         139 ------VKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACS  212 (342)
T ss_dssp             ------EEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEE
T ss_pred             ------ecccccccccceeeeeeeeccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEee
Confidence                  0001111  111112222 466789999999999999998765443322    122345555556667788999


Q ss_pred             cCCCcEEEEeCCCCCCCC---C---------eEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecC
Q 036314          246 GSDPILRIWDPRKPGTSA---P---------VFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDS  313 (347)
Q Consensus       246 ~~d~~i~iwd~~~~~~~~---~---------~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~  313 (347)
                      +.|+.+.+|+........   .         .....+|...|.+++|+|++. +||||+.||+|+|||+++++.+.++..
T Consensus       213 s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~-~lasg~~Dg~v~vWD~~~~~~l~~~~~  291 (342)
T d1yfqa_         213 SIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHK-FLYTAGSDGIISCWNLQTRKKIKNFAK  291 (342)
T ss_dssp             ETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTC-CEEEEETTSCEEEEETTTTEEEEECCC
T ss_pred             cCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCcc-EEEEECCCCEEEEEECCCCcEEEEecC
Confidence            999999999875422110   0         011235666789999999986 599999999999999999988887753


Q ss_pred             -CCCeEEEEeecCCCEEEEccCCceEEEeecc
Q 036314          314 -HKDKVLCADWWRGDSVISGGVDSKLCVSSGV  344 (347)
Q Consensus       314 -h~~~v~~~~~~~~~~l~s~s~D~~v~vw~~~  344 (347)
                       |...+.++.+ +|+.||+|+.|+++++|...
T Consensus       292 ~~~~~~~~~s~-~~~~l~~a~sdd~~~~~~~~  322 (342)
T d1yfqa_         292 FNEDSVVKIAC-SDNILCLATSDDTFKTNAAI  322 (342)
T ss_dssp             CSSSEEEEEEE-CSSEEEEEEECTHHHHCSSS
T ss_pred             CCCCEEEEEEe-CCCEEEEEEcCCcEEEeeee
Confidence             5555555444 57788988889888888653

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.1e-29  Score=223.05  Aligned_cols=245  Identities=19%  Similarity=0.271  Sum_probs=182.0

Q ss_pred             EEEEeeccCCce-EEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEE
Q 036314           56 CTHILEGHCGAV-SSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMV  134 (347)
Q Consensus        56 ~~~~l~~h~~~V-~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l  134 (347)
                      ...+|+||...| ++++|.  +    .+|+||+.||+|++||+.+++         .+.++.+|+++|.+++|+++ .+|
T Consensus         4 ~~~tL~GH~~~vitc~~~~--~----~~l~tgs~Dg~i~vWd~~~~~---------~~~~l~~H~~~V~~l~~s~~-~~l   67 (355)
T d1nexb2           4 QRTTLRGHMTSVITCLQFE--D----NYVITGADDKMIRVYDSINKK---------FLLQLSGHDGGVWALKYAHG-GIL   67 (355)
T ss_dssp             EEEEEECCSSSCEEEEEEE--T----TEEEEEETTTEEEEEETTTTE---------EEEEEECCSSCEEEEEEETT-TEE
T ss_pred             CcEEECCcCCCcEEEEEEC--C----CEEEEEeCCCeEEEEECCCCc---------EEEEEECCCCCEEEEEEcCC-CEE
Confidence            356799999886 566553  3    269999999999999997664         56678999999999999985 589


Q ss_pred             EEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEe-CCCCeEEEEecCCcEEEEE
Q 036314          135 CSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWD  213 (347)
Q Consensus       135 ~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~l~s~s~dg~v~vwd  213 (347)
                      ++|+.|++|++|+........                       ......+........+ +++..+++++.|++|++||
T Consensus        68 ~s~s~D~~i~iw~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~  124 (355)
T d1nexb2          68 VSGSTDRTVRVWDIKKGCCTH-----------------------VFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWK  124 (355)
T ss_dssp             EEEETTCCEEEEETTTTEEEE-----------------------EECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEE
T ss_pred             EEEeccccccccccccccccc-----------------------ccccccccccccccccccccceeeeecCCCcEEEEE
Confidence            999999999999987532100                       0011112222233333 5667899999999999999


Q ss_pred             CCCCceeeeeeeC----------------------eeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCC
Q 036314          214 VEMGKDLSDIFCG----------------------KALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSH  271 (347)
Q Consensus       214 ~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h  271 (347)
                      ++...........                      ........ .+++.+++.+..|+.+++||++..   .....+.++
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~~~d~~i~~~d~~~~---~~~~~~~~~  200 (355)
T d1nexb2         125 LPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV-SGHGNIVVSGSYDNTLIVWDVAQM---KCLYILSGH  200 (355)
T ss_dssp             CCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEE-EEETTEEEEEETTSCEEEEETTTT---EEEEEECCC
T ss_pred             ccCCceeccccccceeccceeccccccceeeeeeecccccccc-ccccceeeeecccceeeeeecccc---cceeeeecc
Confidence            9876543221100                      00001112 223467889999999999998743   346677888


Q ss_pred             CCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecCCCCeEEEEeecCCCEEEEccCCceEEEeeccc
Q 036314          272 NSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKVLCADWWRGDSVISGGVDSKLCVSSGVS  345 (347)
Q Consensus       272 ~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~D~~v~vw~~~~  345 (347)
                      ...+.++.|+|++. ++++++.|++|++||++++..+..+.+|.+.|.++.|+ +++|++|+.||+|++|+..+
T Consensus       201 ~~~~~~~~~~~~~~-~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~-~~~l~~~~~dg~i~iwd~~~  272 (355)
T d1nexb2         201 TDRIYSTIYDHERK-RCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS-DKFLVSAAADGSIRGWDAND  272 (355)
T ss_dssp             SSCEEEEEEETTTT-EEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEEC-SSEEEEECTTSEEEEEETTT
T ss_pred             ccccccccccccce-eeecccccceEEeeeccccccccccccccccccccccc-cceeeeeecccccccccccc
Confidence            88999999999986 59999999999999999999999999999999999986 56899999999999998763

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.9e-30  Score=227.89  Aligned_cols=251  Identities=14%  Similarity=0.186  Sum_probs=186.8

Q ss_pred             ceEEEEEeecCCCceEEEEEccCCC-cEEEEeccccccccCccccceeeeeecc-ccceEEEEEeC--CCCEEEEeeCCC
Q 036314           66 AVSSVNIIKSDGLKYVTVATASKDQ-TLRLWKFDAEELVNHPKKIRSFKILRGH-KASVHSIAAET--SGNMVCSGSWDC  141 (347)
Q Consensus        66 ~V~~v~~~~~~~~~~~~l~s~s~Dg-~v~~wd~~~~~~~~~~~~~~~~~~~~~h-~~~V~~v~~s~--~~~~l~sgs~Dg  141 (347)
                      .+.+++|+|.+.    .|+.++.+. .|+.|+....+       ......+.+| ...|++++|+|  ++++|++|+.||
T Consensus        19 ~~t~l~~~~~~~----~la~~~~~~~~i~~~~~~~~~-------~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg   87 (325)
T d1pgua1          19 FTTHLSYDPTTN----AIAYPCGKSAFVRCLDDGDSK-------VPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESG   87 (325)
T ss_dssp             CCCCCEEETTTT----EEEEEETTEEEEEECCSSCCS-------SCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTS
T ss_pred             CeEEEEECCCCC----EEEEEeCCCEEEEEEeCCCCC-------ccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCC
Confidence            467889988654    456555443 46777654322       1234556777 56799999997  568999999999


Q ss_pred             cEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEeC-CCCeEEEEec--CCcEEEEECCCCc
Q 036314          142 TISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWP-QQETIYSASW--DHSVRTWDVEMGK  218 (347)
Q Consensus       142 ~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~l~s~s~--dg~v~vwd~~~~~  218 (347)
                      +|+|||+........                 ........+..|..+|.++.|. ++++|++++.  ++.+++|+..+++
T Consensus        88 ~i~iWd~~~~~~~~~-----------------~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~  150 (325)
T d1pgua1          88 KVIVWGWTFDKESNS-----------------VEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGN  150 (325)
T ss_dssp             EEEEEEEEEEGGGTE-----------------EEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCC
T ss_pred             CEEEeeecCCcceee-----------------eecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccc
Confidence            999999864321110                 0011122345688899999994 6777776654  6789999999888


Q ss_pred             eeeeeee-CeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcE
Q 036314          219 DLSDIFC-GKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKV  297 (347)
Q Consensus       219 ~~~~~~~-~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i  297 (347)
                      .+..+.. ...+.++++.+.+..++++++.|+.+++||............+.+|...|.+++|+|++..+|++++.|+.|
T Consensus       151 ~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i  230 (325)
T d1pgua1         151 SLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKI  230 (325)
T ss_dssp             EEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCE
T ss_pred             cceeeeecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccce
Confidence            8777653 457889999888777788899999999999864322122233457788999999999876789999999999


Q ss_pred             EEEEcCCCccceeecCCCCeE----EEEeecCCCEEEEccCCceEEEeecc
Q 036314          298 MLWDLRTAWPLSVIDSHKDKV----LCADWWRGDSVISGGVDSKLCVSSGV  344 (347)
Q Consensus       298 ~lwd~~~~~~~~~~~~h~~~v----~~~~~~~~~~l~s~s~D~~v~vw~~~  344 (347)
                      ++||+++++.+.++.+|...+    +++.|++|++|++++.|++|+||+..
T Consensus       231 ~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~  281 (325)
T d1pgua1         231 SCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVT  281 (325)
T ss_dssp             EEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETT
T ss_pred             eeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECC
Confidence            999999999999998887765    55666678999999999999999854

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3.8e-29  Score=218.37  Aligned_cols=263  Identities=21%  Similarity=0.367  Sum_probs=182.9

Q ss_pred             eEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEE
Q 036314           55 VCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMV  134 (347)
Q Consensus        55 ~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l  134 (347)
                      ++.++|+||++.|.+ .+++++    .+|+|||.||+|++||+.+++         ++.++.+|..+|.+++|+++  +|
T Consensus         7 ~~~~~l~GH~~~V~s-~~~~~g----~~l~sgs~Dg~i~vWd~~~~~---------~~~~~~~h~~~V~~v~~~~~--~l   70 (342)
T d2ovrb2           7 KSPKVLKGHDDHVIT-CLQFCG----NRIVSGSDDNTLKVWSAVTGK---------CLRTLVGHTGGVWSSQMRDN--II   70 (342)
T ss_dssp             CCCEEEECSTTSCEE-EEEEET----TEEEEEETTSCEEEEETTTCC---------EEEECCCCSSCEEEEEEETT--EE
T ss_pred             CcCEEECCcCCceEE-EEEECC----CEEEEEeCCCeEEEEECCCCC---------EEEEEeCCCCCEEEEEeCCC--cc
Confidence            456789999999865 244433    369999999999999998764         45678899999999999874  99


Q ss_pred             EEeeCCCcEEEEecCCCCCCCcc------ceeeeccCCC--------ccccc-cccccccccccCCccceEEEEeCCCCe
Q 036314          135 CSGSWDCTISLWRTNDSDAAGNQ------VSIKKRKGNN--------QVEEP-QLEGEAISTLVGHTQCVSSVVWPQQET  199 (347)
Q Consensus       135 ~sgs~Dg~I~iwd~~~~~~~~~~------~~~~~~~~~~--------~~~~~-~~~~~~~~~~~~h~~~v~~~~~~~~~~  199 (347)
                      ++|+.|+++++|+..........      ..........        ..... ...+.....+..+... ..........
T Consensus        71 ~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  149 (342)
T d2ovrb2          71 ISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAA-VRCVQYDGRR  149 (342)
T ss_dssp             EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSC-EEEEEECSSC
T ss_pred             ccceecccccccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeeccccc-ceeeccccce
Confidence            99999999999997754211000      0000000000        00000 0001111111111111 1222245567


Q ss_pred             EEEEecCCcEEEEECCCCceeeeeeeCe-eeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEE
Q 036314          200 IYSASWDHSVRTWDVEMGKDLSDIFCGK-ALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISAC  278 (347)
Q Consensus       200 l~s~s~dg~v~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v  278 (347)
                      ++.++.|+.+++||.+....+..+..+. ...+..+   ++..+++++.|+.|++||++..   ..+..+.+|...+.++
T Consensus       150 ~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~---~~~~l~s~~~dg~i~~~d~~~~---~~~~~~~~~~~~v~~~  223 (342)
T d2ovrb2         150 VVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF---DGIHVVSGSLDTSIRVWDVETG---NCIHTLTGHQSLTSGM  223 (342)
T ss_dssp             EEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE---CSSEEEEEETTSCEEEEETTTC---CEEEEECCCCSCEEEE
T ss_pred             eeeecCCCeEEEeecccceeeEEEcCcccccccccC---CCCEEEEEeCCCeEEEeecccc---eeeeEecccccceeEE
Confidence            8899999999999998887766554332 2333333   3457899999999999998753   3477888999999999


Q ss_pred             EeCCCCCeEEEEEeCCCcEEEEEcCCCccceeec---CCCCeEEEEeecCCCEEEEccCCceEEEeecc
Q 036314          279 KWHNKSWFHLISASYDGKVMLWDLRTAWPLSVID---SHKDKVLCADWWRGDSVISGGVDSKLCVSSGV  344 (347)
Q Consensus       279 ~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~---~h~~~v~~~~~~~~~~l~s~s~D~~v~vw~~~  344 (347)
                      .++++   +|++++.|+.|++||+...+....+.   .|...+.++.|+ ++++++|+.||+|+||+..
T Consensus       224 ~~~~~---~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~s~Dg~i~iwd~~  288 (342)
T d2ovrb2         224 ELKDN---ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN-KNFVITSSDDGTVKLWDLK  288 (342)
T ss_dssp             EEETT---EEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC-SSEEEEEETTSEEEEEETT
T ss_pred             ecCCC---EEEEEcCCCEEEEEecccccccccccccceeeeceeecccC-CCeeEEEcCCCEEEEEECC
Confidence            88764   69999999999999999887766664   466777888775 5689999999999999865

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=2.4e-29  Score=226.45  Aligned_cols=260  Identities=16%  Similarity=0.179  Sum_probs=173.4

Q ss_pred             EEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeeeeccccceEEEEE----e---CC
Q 036314           58 HILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAA----E---TS  130 (347)
Q Consensus        58 ~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~----s---~~  130 (347)
                      ...++|.+.|.++++.+      ..|+|+|.|++||+||....+....   .........|...+..+..    .   .+
T Consensus         8 ~~~~~H~~~I~~v~~~~------~~l~S~S~D~~iriWd~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (393)
T d1sq9a_           8 NAGKAHDADIFSVSACN------SFTVSCSGDGYLKVWDNKLLDNENP---KDKSYSHFVHKSGLHHVDVLQAIERDAFE   78 (393)
T ss_dssp             EESSCSSSCEEEEEECS------SEEEEEETTSEEEEEESBCCTTCCG---GGGEEEEECCTTCEEEEEEEEEEETTTEE
T ss_pred             ecCCcccCccEEEEEeC------CEEEEEECCCeEEEEECCCCCCCcc---cceeEeeeeccCCceEeeeEeeeccCCCC
Confidence            45679999999998754      2689999999999999765432111   1111223345555443322    1   12


Q ss_pred             CCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEeC------CCCeEEEEe
Q 036314          131 GNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWP------QQETIYSAS  204 (347)
Q Consensus       131 ~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~------~~~~l~s~s  204 (347)
                      +.++++++.||+|++|++..............              . ......+...+..+.|.      .+.++++++
T Consensus        79 ~~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~--------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (393)
T d1sq9a_          79 LCLVATTSFSGDLLFYRITREDETKKVIFEKL--------------D-LLDSDMKKHSFWALKWGASNDRLLSHRLVATD  143 (393)
T ss_dssp             EEEEEEEETTSCEEEEEEEECTTTCCEEEEEE--------------C-CSCTTGGGSCEEEEEEECCC----CEEEEEEE
T ss_pred             CcEEEEEeCCCcEEEEEccCCCceeeeecccc--------------c-eeeeccCCCceEEEEEecCCCcccccEEEEEc
Confidence            35778999999999999765432211110000              0 00011233344555542      245789999


Q ss_pred             cCCcEEEEECCCCce-----------eeeee--------eCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCC---
Q 036314          205 WDHSVRTWDVEMGKD-----------LSDIF--------CGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTS---  262 (347)
Q Consensus       205 ~dg~v~vwd~~~~~~-----------~~~~~--------~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~---  262 (347)
                      .||++++||+.....           ...+.        ....+.++++++++  +||+|+.|++|++||++.....   
T Consensus       144 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg--~lasgs~Dg~i~iwd~~~~~~~~~~  221 (393)
T d1sq9a_         144 VKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLRPLYNF  221 (393)
T ss_dssp             TTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTTEEEEEE
T ss_pred             CCCcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC--EEEEEeCCCcEEEEeeccccccccc
Confidence            999999999753211           00010        11246788987653  7899999999999998753211   


Q ss_pred             CCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCc---EEEEEcCCCccceee-------------cCCCCeEEEEeecC-
Q 036314          263 APVFQFSSHNSWISACKWHNKSWFHLISASYDGK---VMLWDLRTAWPLSVI-------------DSHKDKVLCADWWR-  325 (347)
Q Consensus       263 ~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~---i~lwd~~~~~~~~~~-------------~~h~~~v~~~~~~~-  325 (347)
                      .....+.+|.+.|.+++|+|++. +|++|+.|++   |++||+++++.+..+             .+|.+.|++++|+| 
T Consensus       222 ~~~~~l~~h~~~V~~l~~spdg~-~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd  300 (393)
T d1sq9a_         222 ESQHSMINNSNSIRSVKFSPQGS-LLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDS  300 (393)
T ss_dssp             ECCC---CCCCCEEEEEECSSTT-EEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSS
T ss_pred             ccccccccccceEEEcccccccc-eeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCC
Confidence            11234568999999999999986 6999999875   999999988766655             48999999999985 


Q ss_pred             CCEEEEccCCceEEEeecc
Q 036314          326 GDSVISGGVDSKLCVSSGV  344 (347)
Q Consensus       326 ~~~l~s~s~D~~v~vw~~~  344 (347)
                      +++|||||.|++|+||+.-
T Consensus       301 ~~~l~S~s~D~~v~vWd~~  319 (393)
T d1sq9a_         301 GETLCSAGWDGKLRFWDVK  319 (393)
T ss_dssp             SSEEEEEETTSEEEEEETT
T ss_pred             CCeeEEECCCCEEEEEECC
Confidence            7789999999999999854

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.7e-28  Score=213.75  Aligned_cols=254  Identities=13%  Similarity=0.024  Sum_probs=180.0

Q ss_pred             EEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCC-CEE
Q 036314           56 CTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSG-NMV  134 (347)
Q Consensus        56 ~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~-~~l  134 (347)
                      .++.+++|.+.|++|+|+|++    .+||+||.||+||+||+..+..      ...+....+|..+|.+++|++++ .+|
T Consensus         3 ~v~~~~~h~d~I~~l~fsp~~----~~L~s~s~Dg~v~iwd~~~~~~------~~~~~~~~~h~~~V~~v~f~~~~~~~l   72 (342)
T d1yfqa_           3 IVQIEQAPKDYISDIKIIPSK----SLLLITSWDGSLTVYKFDIQAK------NVDLLQSLRYKHPLLCCNFIDNTDLQI   72 (342)
T ss_dssp             EEECSSCCSSCEEEEEEEGGG----TEEEEEETTSEEEEEEEETTTT------EEEEEEEEECSSCEEEEEEEESSSEEE
T ss_pred             eEEcCCCCCCCEEEEEEeCCC----CEEEEEECCCeEEEEEccCCCc------ceEEEEecCCCCCEEEEEEeCCCCCEE
Confidence            466788999999999999954    3799999999999999875432      11223344799999999999864 689


Q ss_pred             EEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCC-ccceEEE-EeCCCCeEEEEecCCcEEEE
Q 036314          135 CSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGH-TQCVSSV-VWPQQETIYSASWDHSVRTW  212 (347)
Q Consensus       135 ~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~-~~~~~~~l~s~s~dg~v~vw  212 (347)
                      ++|+.|++|++|+.......                         .....+ ....... ..++...+++++.|+++++|
T Consensus        73 ~sg~~d~~v~~w~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w  127 (342)
T d1yfqa_          73 YVGTVQGEILKVDLIGSPSF-------------------------QALTNNEANLGICRICKYGDDKLIAASWDGLIEVI  127 (342)
T ss_dssp             EEEETTSCEEEECSSSSSSE-------------------------EECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEE
T ss_pred             EEcccccceeeeeccccccc-------------------------cccccccccccccccccccccccccccccccccee
Confidence            99999999999998654211                         111111 1122222 23567789999999999999


Q ss_pred             ECCCCceeeeeee-------CeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCC
Q 036314          213 DVEMGKDLSDIFC-------GKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSW  285 (347)
Q Consensus       213 d~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~  285 (347)
                      |++.+........       ........+.+. ...+++++.|+.|++||++.............+...+.++.+.|...
T Consensus       128 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (342)
T d1yfqa_         128 DPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTN-SSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQ  206 (342)
T ss_dssp             CHHHHTTBCEEEEESCSSSSSSCCCEEEEEEC-SSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGG
T ss_pred             eccccccceeeecccccccccceeeeeeeecc-CCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCC
Confidence            9875443322211       112223333333 45778899999999999976544333444455666677777777666


Q ss_pred             eEEEEEeCCCcEEEEEcCCCccc---------------eeecCCCCeEEEEeecC-CCEEEEccCCceEEEeeccc
Q 036314          286 FHLISASYDGKVMLWDLRTAWPL---------------SVIDSHKDKVLCADWWR-GDSVISGGVDSKLCVSSGVS  345 (347)
Q Consensus       286 ~~l~s~s~D~~i~lwd~~~~~~~---------------~~~~~h~~~v~~~~~~~-~~~l~s~s~D~~v~vw~~~~  345 (347)
                      ..+++++.||.+.+|+++.....               ....+|...|.+++|+| +++|||||.||+|+||+..+
T Consensus       207 ~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~  282 (342)
T d1yfqa_         207 EGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQT  282 (342)
T ss_dssp             CEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTT
T ss_pred             CEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCC
Confidence            77999999999999998754221               11246777899999986 67899999999999999753

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=8e-29  Score=212.87  Aligned_cols=229  Identities=13%  Similarity=0.137  Sum_probs=174.5

Q ss_pred             eEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEE
Q 036314           55 VCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMV  134 (347)
Q Consensus        55 ~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l  134 (347)
                      +.+++|.||.++|.+++|+|        |+||+.||+|++||+.++              ..+|...|.+++++++ ..+
T Consensus         4 ~~i~~l~gH~~~I~~l~~s~--------l~sgs~Dg~v~~Wd~~~~--------------~~~h~~~V~~~~~~~~-~~~   60 (287)
T d1pgua2           4 EVLKTISGHNKGITALTVNP--------LISGSYDGRIMEWSSSSM--------------HQDHSNLIVSLDNSKA-QEY   60 (287)
T ss_dssp             EEEEEECCCSSCEEEEETTT--------TEEEETTSCEEETTTTEE--------------ECCCCSCEEEEECCST-TCC
T ss_pred             ceeEEECCCCCceEEEEECc--------EEEEeCCCeEEEEECCCC--------------CCCCCCCEEEEEecCC-CeE
Confidence            56789999999999999976        799999999999997643              3579999999999875 467


Q ss_pred             EEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEeCCCCeEEEEecCCcEEEEEC
Q 036314          135 CSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWPQQETIYSASWDHSVRTWDV  214 (347)
Q Consensus       135 ~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~dg~v~vwd~  214 (347)
                      ++++.|+++++|++....                                ....+..+.++++..++..+.++.+.+|+.
T Consensus        61 ~s~s~D~~v~~w~~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (287)
T d1pgua2          61 SSISWDDTLKVNGITKHE--------------------------------FGSQPKVASANNDGFTAVLTNDDDLLILQS  108 (287)
T ss_dssp             EEEETTTEEEETTEEEEE--------------------------------CSSCEEEEEECSSSEEEEEETTSEEEEEET
T ss_pred             EEEeeccccccccccccc--------------------------------cccceeeeeeccCCceEEEeecccceeeec
Confidence            899999999999864310                                112244556665566666677888999999


Q ss_pred             CCCceeeeeeeCeeeEEEEeeCCCCcEEEEecC-CCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeC
Q 036314          215 EMGKDLSDIFCGKALNCIDIGGEGSALIAAGGS-DPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASY  293 (347)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~-d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~  293 (347)
                      .+++.+..+.......++.  +++. .+++++. ++.+++|++.....  .......|...+.+++|+|++. +|++|+.
T Consensus       109 ~~~~~~~~~~~~~~~~~~~--~~~~-~~~v~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~v~~~~~s~~~~-~l~~g~~  182 (287)
T d1pgua2         109 FTGDIIKSVRLNSPGSAVS--LSQN-YVAVGLEEGNTIQVFKLSDLEV--SFDLKTPLRAKPSYISISPSET-YIAAGDV  182 (287)
T ss_dssp             TTCCEEEEEECSSCEEEEE--ECSS-EEEEEETTTSCEEEEETTEEEE--EEECSSCCSSCEEEEEECTTSS-EEEEEET
T ss_pred             cceeeeeeccccceeeeee--ccCc-ceeeeccccceeeeeeccccce--eeeeeeccCCceeEEEeccCcc-ccccccc
Confidence            9888877766555444443  3444 4455554 46899999864211  1222235777899999999986 5999999


Q ss_pred             CCcEEEEEcCCCccce-eecCCCCeEEEEeecC-----------CCEEEEccCCceEEEeecc
Q 036314          294 DGKVMLWDLRTAWPLS-VIDSHKDKVLCADWWR-----------GDSVISGGVDSKLCVSSGV  344 (347)
Q Consensus       294 D~~i~lwd~~~~~~~~-~~~~h~~~v~~~~~~~-----------~~~l~s~s~D~~v~vw~~~  344 (347)
                      ||.|++||+.+++... .+.+|.+.|.+++|+|           +.+|||||.|++|+||+..
T Consensus       183 dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~  245 (287)
T d1pgua2         183 MGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVK  245 (287)
T ss_dssp             TSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESS
T ss_pred             cccccceeecccccccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECC
Confidence            9999999999876554 4678999999999974           3479999999999999853

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=9.3e-27  Score=198.56  Aligned_cols=235  Identities=23%  Similarity=0.441  Sum_probs=177.8

Q ss_pred             EEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEEEE
Q 036314           57 THILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCS  136 (347)
Q Consensus        57 ~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~s  136 (347)
                      ++.+.+|...|.|++|  ++    .+|+||+.||+||+||+.+++         ++.++.+|+++|.+++|  ++++|++
T Consensus         8 i~~~~~~~~~V~c~~~--d~----~~l~sgs~Dg~i~vWd~~~~~---------~~~~l~~H~~~V~~v~~--~~~~l~s   70 (293)
T d1p22a2           8 IHCRSETSKGVYCLQY--DD----QKIVSGLRDNTIKIWDKNTLE---------CKRILTGHTGSVLCLQY--DERVIIT   70 (293)
T ss_dssp             EECCCSSCCCEEEEEC--CS----SEEEEEESSSCEEEEESSSCC---------EEEEECCCSSCEEEEEC--CSSEEEE
T ss_pred             EeccCCCCCCEEEEEE--cC----CEEEEEeCCCeEEEEECCCCc---------EEEEEecCCCCEeeeec--ccceeec
Confidence            3456678888999865  22    379999999999999997654         56688999999999886  6789999


Q ss_pred             eeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEeCCCCeEEEEecCCcEEEEECCC
Q 036314          137 GSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWPQQETIYSASWDHSVRTWDVEM  216 (347)
Q Consensus       137 gs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~dg~v~vwd~~~  216 (347)
                      |+.|++|++|++.....                         ......+..... ...+....++++..++.+++||...
T Consensus        71 ~s~D~~i~~~~~~~~~~-------------------------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  124 (293)
T d1p22a2          71 GSSDSTVRVWDVNTGEM-------------------------LNTLIHHCEAVL-HLRFNNGMMVTCSKDRSIAVWDMAS  124 (293)
T ss_dssp             EETTSCEEEEESSSCCE-------------------------EEEECCCCSCEE-EEECCTTEEEEEETTSCEEEEECSS
T ss_pred             ccccccccccccccccc-------------------------cccccccccccc-cccccccceeecccccceeEeeccc
Confidence            99999999999875421                         111111111222 2234567889999999999999987


Q ss_pred             Cceeeeee----eCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEe
Q 036314          217 GKDLSDIF----CGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISAS  292 (347)
Q Consensus       217 ~~~~~~~~----~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s  292 (347)
                      ........    ....+.+..+.+   ..+++++.|+.+++||++..   ..+..+.+|...+..+.+++.   .|++++
T Consensus       125 ~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~s~d~~i~~~d~~~~---~~~~~~~~~~~~v~~~~~~~~---~l~~~~  195 (293)
T d1p22a2         125 PTDITLRRVLVGHRAAVNVVDFDD---KYIVSASGDRTIKVWNTSTC---EFVRTLNGHKRGIACLQYRDR---LVVSGS  195 (293)
T ss_dssp             SSCCEEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTTC---CEEEEEECCSSCEEEEEEETT---EEEEEE
T ss_pred             cccccccccccccccccccceecc---cccccccCCCceeeecCCCC---cEEEEEcccccccccccCCCC---eEEEec
Confidence            65433221    122445555533   36678889999999999753   346778899999988888653   599999


Q ss_pred             CCCcEEEEEcCCCccceeecCCCCeEEEEeecCCCEEEEccCCceEEEeecc
Q 036314          293 YDGKVMLWDLRTAWPLSVIDSHKDKVLCADWWRGDSVISGGVDSKLCVSSGV  344 (347)
Q Consensus       293 ~D~~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~D~~v~vw~~~  344 (347)
                      .|++|++||+++...+..+.+|...+.++.+ ++.+|++|+.||+|+||+..
T Consensus       196 ~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~-~~~~l~sg~~dg~i~iwd~~  246 (293)
T d1p22a2         196 SDNTIRLWDIECGACLRVLEGHEELVRCIRF-DNKRIVSGAYDGKIKVWDLV  246 (293)
T ss_dssp             TTSCEEEEETTTCCEEEEECCCSSCEEEEEC-CSSEEEEEETTSCEEEEEHH
T ss_pred             CCCEEEEEecccceeeeeecccceeeeeccc-cceEEEEEcCCCEEEEEECC
Confidence            9999999999999988999999888876554 57789999999999999853

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.95  E-value=2.2e-26  Score=203.04  Aligned_cols=268  Identities=10%  Similarity=-0.005  Sum_probs=185.8

Q ss_pred             cCC--CCCEEEEEecCCeEEEEcCCCeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCC--cEEEEeccccccccCc
Q 036314           31 DGS--NPGFILTGCYDNLGRVWKAGGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQ--TLRLWKFDAEELVNHP  106 (347)
Q Consensus        31 ~~~--~~~~l~sg~~d~~i~iw~~~~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg--~v~~wd~~~~~~~~~~  106 (347)
                      +||  +|+++|+++ +|.|++||..+..+..+ +|...|.+++|+|++    ..|++++.|.  .|++||+.+++     
T Consensus         9 ~fSP~dG~~~a~~~-~g~v~v~d~~~~~~~~~-~~~~~v~~~~~spDg----~~l~~~~~~~g~~v~v~d~~~~~-----   77 (360)
T d1k32a3           9 DFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKV-PEPLRIRYVRRGGDT----KVAFIHGTREGDFLGIYDYRTGK-----   77 (360)
T ss_dssp             EEEECGGGCEEEEE-TTEEEEECTTSSBEEEC-SCCSCEEEEEECSSS----EEEEEEEETTEEEEEEEETTTCC-----
T ss_pred             cccCCCCCEEEEEE-CCeEEEEECCCCcEEEc-cCCCCEEEEEECCCC----CEEEEEEcCCCCEEEEEECCCCc-----
Confidence            355  466888775 57999999865443334 699999999999944    4577666553  79999998764     


Q ss_pred             cccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCc
Q 036314          107 KKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHT  186 (347)
Q Consensus       107 ~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  186 (347)
                           ...+..|...|.+++|+|||++|++++.|+.+++|++.+..                         ....+..|.
T Consensus        78 -----~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~  127 (360)
T d1k32a3          78 -----AEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGK-------------------------PTVIERSRE  127 (360)
T ss_dssp             -----EEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCC-------------------------EEEEEECSS
T ss_pred             -----EEEeeCCCceEEeeeecccccccceeccccccccccccccc-------------------------eeeeeeccc
Confidence                 23567899999999999999999999999999999987542                         223445566


Q ss_pred             cceEEEEe-CCCCeEEEE----------ecCCcEEEEECCCCceeeeeeeCeeeEEEEeeCCCCcEEEEecCCCcEEEEe
Q 036314          187 QCVSSVVW-PQQETIYSA----------SWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEGSALIAAGGSDPILRIWD  255 (347)
Q Consensus       187 ~~v~~~~~-~~~~~l~s~----------s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd  255 (347)
                      ..+.+++| |++++|+.+          ..++.+++||+.+++.............+.++++ +..|++++.++.+++||
T Consensus       128 ~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~spd-g~~l~~~s~~~~~~~~d  206 (360)
T d1k32a3         128 AMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDAD-SKNLYYLSYRSLDPSPD  206 (360)
T ss_dssp             SCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTT-SCEEEEEESCCCCCEEC
T ss_pred             ccccchhhccceeeeeeeccccccceeeccccceeeeccccCceeeecccccccccccccCC-CCEEEEEeCCCceEccc
Confidence            67777887 577777754          3445689999988765544444455677788665 56788889999999998


Q ss_pred             CCCCCC----CCCeEE----------------------------------------------ecCCCCCeeEEEeCCCCC
Q 036314          256 PRKPGT----SAPVFQ----------------------------------------------FSSHNSWISACKWHNKSW  285 (347)
Q Consensus       256 ~~~~~~----~~~~~~----------------------------------------------~~~h~~~v~~v~~s~~~~  285 (347)
                      ......    ......                                              +..+.+.+..+.+.+.+.
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (360)
T d1k32a3         207 RVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGE  286 (360)
T ss_dssp             SSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCS
T ss_pred             ccccceeeccccceEEEecccCccccceECCCcCcccccceeecccccceeecccCcCceeEeeecCCCceEEEEEecCC
Confidence            542100    000000                                              111111111122222111


Q ss_pred             --eEEEEEeCCCcEEEEEcCCCccceeecCCCCeEEEEeecC-CCEEEEccCCceEEEeecc
Q 036314          286 --FHLISASYDGKVMLWDLRTAWPLSVIDSHKDKVLCADWWR-GDSVISGGVDSKLCVSSGV  344 (347)
Q Consensus       286 --~~l~s~s~D~~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~l~s~s~D~~v~vw~~~  344 (347)
                        .++++++.++.|++||+.+++ +   ..|.+.|.+++|+| |++|++++.||+|++|+..
T Consensus       287 ~~~~~~~~~~~~~i~~~d~~~~~-~---~~~~~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~  344 (360)
T d1k32a3         287 FAAYYQGAPEKGVLLKYDVKTRK-V---TEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLE  344 (360)
T ss_dssp             HHHHHHCCCCCEEEEEEETTTCC-E---EEEEEEEEEEEECTTSCEEEEEETTSCEEEEESS
T ss_pred             CeeEEEecCCCCEEEEEECCCCe-E---EEecCCcCEEEECCCCCEEEEEECCCeEEEEECC
Confidence              135666778999999998764 2   23456799999985 7799999999999999864

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.93  E-value=1.2e-24  Score=197.72  Aligned_cols=283  Identities=13%  Similarity=0.090  Sum_probs=175.7

Q ss_pred             EEEEEecCCeEEEEcCC-CeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeee
Q 036314           37 FILTGCYDNLGRVWKAG-GVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKIL  115 (347)
Q Consensus        37 ~l~sg~~d~~i~iw~~~-~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~  115 (347)
                      ++|+.+.||+|++||.. +++++.+..|. .+.+++|+|++    ++|++++.|++|++||+.+++...    ...+...
T Consensus        34 ~~V~~~~dg~v~vwD~~t~~~~~~l~~g~-~~~~vafSPDG----k~l~~~~~d~~v~vwd~~t~~~~~----~~~i~~~  104 (426)
T d1hzua2          34 FSVTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASG----RYLLVIGRDARIDMIDLWAKEPTK----VAEIKIG  104 (426)
T ss_dssp             EEEEETTTTEEEEEETTTCSEEEEEECCS-SEEEEEECTTS----CEEEEEETTSEEEEEETTSSSCEE----EEEEECC
T ss_pred             EEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCC----CEEEEEeCCCCEEEEEccCCceeE----EEEEeCC
Confidence            56889999999999975 78888898875 48999999944    478999999999999998765321    1122334


Q ss_pred             eccccceEEEEEeCCCCEE-EEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccc-cccCCccceEEEE
Q 036314          116 RGHKASVHSIAAETSGNMV-CSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAIS-TLVGHTQCVSSVV  193 (347)
Q Consensus       116 ~~h~~~V~~v~~s~~~~~l-~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~~~  193 (347)
                      .+|...+.+++|+|||+++ +++..++++++||...........    ..           ..... ....+......+.
T Consensus       105 ~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~----~~-----------~~~~~~~~~~~~~~~~~i~  169 (426)
T d1hzua2         105 IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVS----TR-----------GMTVDTQTYHPEPRVAAII  169 (426)
T ss_dssp             SEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEE----CC-----------EECSSSCCEESCCCEEEEE
T ss_pred             CCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEee----cc-----------CCCccceeecCCCceeEEE
Confidence            4677778888999999976 455689999999987653211000    00           00000 0001112222222


Q ss_pred             e-CCCCeEEE-EecCCcEEEEECCCCcee--eeeeeCeeeEEEEeeCCCCcEEEEec-----------------------
Q 036314          194 W-PQQETIYS-ASWDHSVRTWDVEMGKDL--SDIFCGKALNCIDIGGEGSALIAAGG-----------------------  246 (347)
Q Consensus       194 ~-~~~~~l~s-~s~dg~v~vwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~la~~~-----------------------  246 (347)
                      . +++..++. ....+.+.+++.......  ..+.....+..+.+.+++..++++..                       
T Consensus       170 ~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~  249 (426)
T d1hzua2         170 ASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGK  249 (426)
T ss_dssp             ECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSS
T ss_pred             ECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCC
Confidence            2 34444333 233344555554443321  11222223344444444433333333                       


Q ss_pred             ------------------------CCCcEEEEeCCCCC----CCCCeEEecCCCCCeeEEEeCCCCCeEEE-------EE
Q 036314          247 ------------------------SDPILRIWDPRKPG----TSAPVFQFSSHNSWISACKWHNKSWFHLI-------SA  291 (347)
Q Consensus       247 ------------------------~d~~i~iwd~~~~~----~~~~~~~~~~h~~~v~~v~~s~~~~~~l~-------s~  291 (347)
                                              .|+.+.+|+.....    .......+.+|...+..++|+|++.+ |+       ++
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~-l~v~~~~~~s~  328 (426)
T d1hzua2         250 TPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSH-LYVDTTFNPDA  328 (426)
T ss_dssp             CCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSE-EEECCTTCSSH
T ss_pred             cccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCce-EEEeecCCCCc
Confidence                                    34455555433211    01234567889999999999999976 66       45


Q ss_pred             eCCCcEEEEEcCCCccceee---------cCCCCeEEEEeecC-CCEE-EE----ccCCceEEEeecc
Q 036314          292 SYDGKVMLWDLRTAWPLSVI---------DSHKDKVLCADWWR-GDSV-IS----GGVDSKLCVSSGV  344 (347)
Q Consensus       292 s~D~~i~lwd~~~~~~~~~~---------~~h~~~v~~~~~~~-~~~l-~s----~s~D~~v~vw~~~  344 (347)
                      +.|++|+|||+++++...++         ..|...|+.++|+| |+++ +|    ++.|++|+||+.-
T Consensus       329 ~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~  396 (426)
T d1hzua2         329 RISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDK  396 (426)
T ss_dssp             HHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETT
T ss_pred             ccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECC
Confidence            67899999999998766543         34566799999986 6664 44    3578999999864

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.93  E-value=7.9e-25  Score=192.88  Aligned_cols=262  Identities=10%  Similarity=0.050  Sum_probs=184.3

Q ss_pred             EEeccCCCCcCCCCCcCCceeeccCCC-CCEEEEEecCC--eEEEEcCCCeEEEEeeccCCceEEEEEeecCCCceEEEE
Q 036314            8 YIKAVAPQKEEEPSLHDDWVSAVDGSN-PGFILTGCYDN--LGRVWKAGGVCTHILEGHCGAVSSVNIIKSDGLKYVTVA   84 (347)
Q Consensus         8 ~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~l~sg~~d~--~i~iw~~~~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~   84 (347)
                      |+.++.. ......+|...|.+++|++ +++|+++|.|.  .+++||..+...+.+.+|.+.|.+++|+|++    ..|+
T Consensus        27 ~v~d~~~-~~~~~~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~~~~~~~v~~~~~spdg----~~l~  101 (360)
T d1k32a3          27 FIQDVSG-TYVLKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNG----KFAV  101 (360)
T ss_dssp             EEECTTS-SBEEECSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTS----SEEE
T ss_pred             EEEECCC-CcEEEccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEEeeCCCceEEeeeecccc----cccc
Confidence            5555532 2223457999999999995 55788776654  8999998776677888999999999999954    4799


Q ss_pred             EccCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEe----------eCCCcEEEEecCCCCCC
Q 036314           85 TASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSG----------SWDCTISLWRTNDSDAA  154 (347)
Q Consensus        85 s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sg----------s~Dg~I~iwd~~~~~~~  154 (347)
                      +++.++.+++|++..++         ....+..|...+.+++|+|||++|+.+          ..++.+++|++....  
T Consensus       102 ~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~--  170 (360)
T d1k32a3         102 VANDRFEIMTVDLETGK---------PTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK--  170 (360)
T ss_dssp             EEETTSEEEEEETTTCC---------EEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE--
T ss_pred             eeccccccccccccccc---------eeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccccCc--
Confidence            99999999999997654         344667888999999999999999854          445668899876531  


Q ss_pred             CccceeeeccCCCccccccccccccccccCCccceEEEEe-CCCCeEEEEecCCcEEEEECCCCcee-------eeeee-
Q 036314          155 GNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDL-------SDIFC-  225 (347)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~l~s~s~dg~v~vwd~~~~~~~-------~~~~~-  225 (347)
                                              ...+..|...+..+.| ++++.|++++.|+.+++||.......       ..+.. 
T Consensus       171 ------------------------~~~~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  226 (360)
T d1k32a3         171 ------------------------IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLI  226 (360)
T ss_dssp             ------------------------EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESS
T ss_pred             ------------------------eeeecccccccccccccCCCCEEEEEeCCCceEcccccccceeeccccceEEEecc
Confidence                                    1122334455666666 68889999999999999986543211       00000 


Q ss_pred             ------------------------------------CeeeEEEEeeCC------------CCcEEEEecCCCcEEEEeCC
Q 036314          226 ------------------------------------GKALNCIDIGGE------------GSALIAAGGSDPILRIWDPR  257 (347)
Q Consensus       226 ------------------------------------~~~~~~~~~~~~------------~~~~la~~~~d~~i~iwd~~  257 (347)
                                                          ......+...+.            ...++++++.++.+++||+.
T Consensus       227 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~  306 (360)
T d1k32a3         227 PGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVK  306 (360)
T ss_dssp             TTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETT
T ss_pred             cCccccceECCCcCcccccceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECC
Confidence                                                000011111110            01123456678899999986


Q ss_pred             CCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecCCCCe
Q 036314          258 KPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDK  317 (347)
Q Consensus       258 ~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h~~~  317 (347)
                      ..    ...   .|.+.|.+++|+|||. +|++++.||.|++||+++++...++..+..+
T Consensus       307 ~~----~~~---~~~~~v~~~~~SpDG~-~l~~~~~Dg~i~v~d~~~~~~~~~~~~d~~~  358 (360)
T d1k32a3         307 TR----KVT---EVKNNLTDLRLSADRK-TVMVRKDDGKIYTFPLEKPEDERTVETDKRP  358 (360)
T ss_dssp             TC----CEE---EEEEEEEEEEECTTSC-EEEEEETTSCEEEEESSCTTSCEECCCCSSC
T ss_pred             CC----eEE---EecCCcCEEEECCCCC-EEEEEECCCeEEEEECCCCCcceEEEecccc
Confidence            42    122   3445689999999996 5999999999999999999888877655444

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.91  E-value=6.8e-21  Score=163.21  Aligned_cols=262  Identities=10%  Similarity=0.061  Sum_probs=189.0

Q ss_pred             EEEEecCCeEEEEcCC-CeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeeee
Q 036314           38 ILTGCYDNLGRVWKAG-GVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILR  116 (347)
Q Consensus        38 l~sg~~d~~i~iw~~~-~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~  116 (347)
                      .|+++.|++|++||+. ++.++.+... ..+..++|+|++.   ..+++++.+++|++||+.+++         .+..+.
T Consensus         5 yV~~~~~~~v~v~D~~t~~~~~~i~~g-~~p~~va~spdG~---~l~v~~~~~~~i~v~d~~t~~---------~~~~~~   71 (301)
T d1l0qa2           5 YIANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGT---KVYVANAHSNDVSIIDTATNN---------VIATVP   71 (301)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSS---EEEEEEGGGTEEEEEETTTTE---------EEEEEE
T ss_pred             EEEECCCCEEEEEECCCCeEEEEEECC-CCceEEEEeCCCC---EEEEEECCCCEEEEEECCCCc---------eeeeee
Confidence            4678889999999974 6777776644 4468899999553   234688899999999998764         344566


Q ss_pred             ccccceEEEEEeCCCCEE-EEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEe-
Q 036314          117 GHKASVHSIAAETSGNMV-CSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW-  194 (347)
Q Consensus       117 ~h~~~V~~v~~s~~~~~l-~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-  194 (347)
                      .|.. +..++|++++..+ +++..++.+.+|+..+..                         ....+..+. ....+.+ 
T Consensus        72 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~-~~~~~~~~  124 (301)
T d1l0qa2          72 AGSS-PQGVAVSPDGKQVYVTNMASSTLSVIDTTSNT-------------------------VAGTVKTGK-SPLGLALS  124 (301)
T ss_dssp             CSSS-EEEEEECTTSSEEEEEETTTTEEEEEETTTTE-------------------------EEEEEECSS-SEEEEEEC
T ss_pred             cccc-ccccccccccccccccccccceeeecccccce-------------------------eeeeccccc-cceEEEee
Confidence            6654 6889999999755 566778899999986532                         122233333 3445555 


Q ss_pred             CCCCeE-EEEecCCcEEEEECCCCceeeeeeeCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCC
Q 036314          195 PQQETI-YSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNS  273 (347)
Q Consensus       195 ~~~~~l-~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~  273 (347)
                      +++..+ +++..++.+.+|+..+...+..+.....+.++.+.+++..+++++..++.+.+|+....   .....+ .+..
T Consensus       125 ~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~  200 (301)
T d1l0qa2         125 PDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTN---SVIDTV-KVEA  200 (301)
T ss_dssp             TTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT---EEEEEE-ECSS
T ss_pred             cCCCeeeeeeccccceeeeeccccceeeecccCCCceEEEeeccccceeeecccccccccccccce---eeeecc-cccC
Confidence            577765 56667888999999998887777666667788888777766666666778888886532   122233 3445


Q ss_pred             CeeEEEeCCCCCeEEEEEe--CCCcEEEEEcCCCccceeecCCCCeEEEEeecC-CCEE-EEccCCceEEEeecc
Q 036314          274 WISACKWHNKSWFHLISAS--YDGKVMLWDLRTAWPLSVIDSHKDKVLCADWWR-GDSV-ISGGVDSKLCVSSGV  344 (347)
Q Consensus       274 ~v~~v~~s~~~~~~l~s~s--~D~~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~l-~s~s~D~~v~vw~~~  344 (347)
                      ....++|++++..+++++.  .+++|++||+.+++.+..+..+ ..+.+++|+| |++| ++++.|++|+||+..
T Consensus       201 ~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~-~~~~~va~spdg~~l~va~~~~~~i~v~D~~  274 (301)
T d1l0qa2         201 APSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG-PDPAGIAVTPDGKKVYVALSFCNTVSVIDTA  274 (301)
T ss_dssp             EEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred             CcceeeccccccccccccccceeeeeeeeecCCCeEEEEEcCC-CCEEEEEEeCCCCEEEEEECCCCeEEEEECC
Confidence            6778999999986555443  4578999999999887777654 4679999985 6664 788899999999865

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.88  E-value=5.5e-22  Score=180.21  Aligned_cols=199  Identities=12%  Similarity=0.047  Sum_probs=138.0

Q ss_pred             EEEEEecCCeEEEEcCC-CeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeee
Q 036314           37 FILTGCYDNLGRVWKAG-GVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKIL  115 (347)
Q Consensus        37 ~l~sg~~d~~i~iw~~~-~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~  115 (347)
                      ++++.+.||+|++||.. +++++.+..|. .+..++|+|++    ++|++++.|++|++||+.+++..    ....+...
T Consensus        34 ~~v~~~d~g~v~v~D~~t~~v~~~~~~g~-~~~~v~fSpDG----~~l~~~s~dg~v~~~d~~t~~~~----~~~~i~~~  104 (432)
T d1qksa2          34 FSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASG----RYLFVIGRDGKVNMIDLWMKEPT----TVAEIKIG  104 (432)
T ss_dssp             EEEEETTTTEEEEEETTTCCEEEEEECSS-CEEEEEECTTS----CEEEEEETTSEEEEEETTSSSCC----EEEEEECC
T ss_pred             EEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCC----CEEEEEcCCCCEEEEEeeCCCce----EEEEEecC
Confidence            46899999999999975 68888888774 58999999954    47899999999999999765421    11223334


Q ss_pred             eccccceEEEEEeCCCCEE-EEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEe
Q 036314          116 RGHKASVHSIAAETSGNMV-CSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW  194 (347)
Q Consensus       116 ~~h~~~V~~v~~s~~~~~l-~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  194 (347)
                      .+|.+.+.+.+|+|||++| ++++.|++|++||..+............              .....-..+......+.+
T Consensus       105 ~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~v~~  170 (432)
T d1qksa2         105 SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGM--------------TYDEQEYHPEPRVAAILA  170 (432)
T ss_dssp             SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEE--------------CTTTCCEESCCCEEEEEE
T ss_pred             CCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCc--------------cccceeccCCCceeEEEE
Confidence            4677777888899999975 7889999999999887543211000000              000000112333445555


Q ss_pred             -CCCCe-EEEEecCCcEEEEECCCCcee--eeeeeCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCC
Q 036314          195 -PQQET-IYSASWDHSVRTWDVEMGKDL--SDIFCGKALNCIDIGGEGSALIAAGGSDPILRIWDPRK  258 (347)
Q Consensus       195 -~~~~~-l~s~s~dg~v~vwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~  258 (347)
                       +++.. +++...++.+.+||..+.+..  ..+..+..+..+.++|++..+++++..++.+.++|.+.
T Consensus       171 s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~  238 (432)
T d1qksa2         171 SHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKE  238 (432)
T ss_dssp             CSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTT
T ss_pred             CCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeeccc
Confidence             46665 467777899999999877643  34444556778899888776777777788899998753

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.87  E-value=5.2e-20  Score=159.93  Aligned_cols=264  Identities=11%  Similarity=0.053  Sum_probs=175.7

Q ss_pred             CEEEEEecCCeEEEEcCC-CeEEEEeec--cCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCcccccee
Q 036314           36 GFILTGCYDNLGRVWKAG-GVCTHILEG--HCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSF  112 (347)
Q Consensus        36 ~~l~sg~~d~~i~iw~~~-~~~~~~l~~--h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~  112 (347)
                      .||+|++.|++|++||.. +++++.+..  +...+.+++|+|++.   ..+++++.|+.|.+||+.+++++         
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~---~l~v~~~~~~~v~v~D~~t~~~~---------   69 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGR---IAYATVNKSESLVKIDLVTGETL---------   69 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSS---EEEEEETTTTEEEEEETTTCCEE---------
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCC---EEEEEECCCCeEEEEECCCCcEE---------
Confidence            489999999999999985 577777764  345678999998543   23467889999999999887643         


Q ss_pred             eeeecc-----ccceEEEEEeCCCCEEEEeeC------------CCcEEEEecCCCCCCCccceeeeccCCCcccccccc
Q 036314          113 KILRGH-----KASVHSIAAETSGNMVCSGSW------------DCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLE  175 (347)
Q Consensus       113 ~~~~~h-----~~~V~~v~~s~~~~~l~sgs~------------Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (347)
                      ..+..+     ...+..++|+|+++.++.++.            +..+.+||..+..                       
T Consensus        70 ~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----------------------  126 (337)
T d1pbyb_          70 GRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLS-----------------------  126 (337)
T ss_dssp             EEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTE-----------------------
T ss_pred             EEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCe-----------------------
Confidence            222222     233456899999999988775            4555566554321                       


Q ss_pred             ccccccccCCccceEEEEe-CCCCeEEEEecCCcEEEEECCCCceeeeeeeCeeeEEEEeeCC-----------------
Q 036314          176 GEAISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGE-----------------  237 (347)
Q Consensus       176 ~~~~~~~~~h~~~v~~~~~-~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~-----------------  237 (347)
                        ....+.. ...+..+++ ++++++++++.  .+.+||..+++....+..........+.++                 
T Consensus       127 --~~~~~~~-~~~~~~~~~s~dg~~l~~~~~--~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (337)
T d1pbyb_         127 --RRKAFEA-PRQITMLAWARDGSKLYGLGR--DLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATP  201 (337)
T ss_dssp             --EEEEEEC-CSSCCCEEECTTSSCEEEESS--SEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEE
T ss_pred             --EEEeccc-cCCceEEEEcCCCCEEEEEcC--CcceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeee
Confidence              1222222 233455666 67788888764  477899988876655432110000000000                 


Q ss_pred             ------CCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceee
Q 036314          238 ------GSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVI  311 (347)
Q Consensus       238 ------~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~  311 (347)
                            .......+..++.+.+||.....  .....+.++...+..+.++|++.. ++.+  ++.|++||+++++.+..+
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~i~v~d~~~~~~~~~~  276 (337)
T d1pbyb_         202 FYTARKDIDPADPTAYRTGLLTMDLETGE--MAMREVRIMDVFYFSTAVNPAKTR-AFGA--YNVLESFDLEKNASIKRV  276 (337)
T ss_dssp             EEEEBTTSCTTSGGGEEEEEEEEETTTCC--EEEEEEEECSSCEEEEEECTTSSE-EEEE--ESEEEEEETTTTEEEEEE
T ss_pred             eeeeeeccceeeecccCccEEEEEcCCCc--EEEEEecCCCcceEEEEecccceE-EEEc--cccEEEEECCCCcEEEEE
Confidence                  00011123345568888876432  223456678888888999999864 5443  589999999999888876


Q ss_pred             cCCCCeEEEEeecC-CCEEEEccCCceEEEeeccc
Q 036314          312 DSHKDKVLCADWWR-GDSVISGGVDSKLCVSSGVS  345 (347)
Q Consensus       312 ~~h~~~v~~~~~~~-~~~l~s~s~D~~v~vw~~~~  345 (347)
                      . +...+.+++|+| |++|++++.|++|+||+.-+
T Consensus       277 ~-~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t  310 (337)
T d1pbyb_         277 P-LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAET  310 (337)
T ss_dssp             E-CSSCCCEEEECTTSCEEEEESBSSEEEEEETTT
T ss_pred             c-CCCCEEEEEECCCCCEEEEEeCCCcEEEEECCC
Confidence            4 456789999985 77899999999999999764

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.87  E-value=9.2e-21  Score=165.38  Aligned_cols=278  Identities=12%  Similarity=0.021  Sum_probs=177.7

Q ss_pred             ccCC-CCCEEEEEecCCeEEEEcCC-CeEEEEee-ccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCc
Q 036314           30 VDGS-NPGFILTGCYDNLGRVWKAG-GVCTHILE-GHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHP  106 (347)
Q Consensus        30 ~~~~-~~~~l~sg~~d~~i~iw~~~-~~~~~~l~-~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~  106 (347)
                      ++++ ++.+|++++.|++|.+||+. ++.++.+. .|...+.+++|+|++.   ..+++++.+++|++||+.+++.....
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~---~l~v~~~~~~~v~~~d~~t~~~~~~~   78 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNR---TAYVLNNHYGDIYGIDLDTCKNTFHA   78 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSS---EEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCC---EEEEEECCCCcEEEEeCccCeeeeee
Confidence            4566 45699999999999999985 66777776 4566678999999543   34577888999999999877543211


Q ss_pred             cccceeeeeeccccceEEEEEeCCCCEEEEee------------CCCcEEEEecCCCCCCCccceeeeccCCCccccccc
Q 036314          107 KKIRSFKILRGHKASVHSIAAETSGNMVCSGS------------WDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQL  174 (347)
Q Consensus       107 ~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs------------~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (347)
                      ...   .....+...+..++|+|||++++.++            .++.+.+|+..+...                     
T Consensus        79 ~~~---~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---------------------  134 (346)
T d1jmxb_          79 NLS---SVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLE---------------------  134 (346)
T ss_dssp             ESC---CSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGG---------------------
T ss_pred             ccc---ccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEeccccee---------------------
Confidence            000   00011223455789999999888765            356666776543211                     


Q ss_pred             cccccccccCC--ccceEEEEeCCCCeEEEEecCCcEEEEECCCCceeeeeeeCeeeEEEEeeCC---------------
Q 036314          175 EGEAISTLVGH--TQCVSSVVWPQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGE---------------  237 (347)
Q Consensus       175 ~~~~~~~~~~h--~~~v~~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~---------------  237 (347)
                          ...+..+  ...+..+.++++..++..  ++.+.+||+.+++.+..+..+.....+.+.++               
T Consensus       135 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (346)
T d1jmxb_         135 ----AKPVRTFPMPRQVYLMRAADDGSLYVA--GPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFS  208 (346)
T ss_dssp             ----BCCSEEEECCSSCCCEEECTTSCEEEE--SSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEE
T ss_pred             ----eeEEEeeeccCceEEEEecCCCEEEEe--CCcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceE
Confidence                1111111  112233444555555543  35688999988877665543221111111111               


Q ss_pred             ----------CCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCcc
Q 036314          238 ----------GSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWP  307 (347)
Q Consensus       238 ----------~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~  307 (347)
                                ....++++..+..+.+||.....  .....+.+|...+..+.+++++.+ ++.+. ++.|.+||..+++.
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~v~v~d~~~~~~  284 (346)
T d1jmxb_         209 MLYTIARFKDDKQDPATADLLYGYLSVDLKTGK--THTQEFADLTELYFTGLRSPKDPN-QIYGV-LNRLAKYDLKQRKL  284 (346)
T ss_dssp             EEEEEEEC-------CCCEEEEEEEEEETTTCC--EEEEEEEECSSCEEEEEECSSCTT-EEEEE-ESEEEEEETTTTEE
T ss_pred             eeeeeeeeccCceeEeeccCCceEEEEECCCCc--eEEEEeecccceeEEEEEeCCCCE-EEEec-CCeEEEEECCCCcE
Confidence                      11122334445678888876432  223455678888999999999875 55554 35799999999887


Q ss_pred             ceeecCCCCeEEEEeecC-CCEEEEccCCceEEEeeccc
Q 036314          308 LSVIDSHKDKVLCADWWR-GDSVISGGVDSKLCVSSGVS  345 (347)
Q Consensus       308 ~~~~~~h~~~v~~~~~~~-~~~l~s~s~D~~v~vw~~~~  345 (347)
                      +..+. +...+.+++|++ |++|++++.|++|+||+..+
T Consensus       285 ~~~~~-~~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t  322 (346)
T d1jmxb_         285 IKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDT  322 (346)
T ss_dssp             EEEEE-CSSCCCEEEECSSSSCEEEESBSSEEEEEETTT
T ss_pred             EEEEc-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECcc
Confidence            77765 345689999985 77899999999999999864

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.86  E-value=3.4e-20  Score=167.98  Aligned_cols=232  Identities=12%  Similarity=0.075  Sum_probs=156.2

Q ss_pred             EEEEEccCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCcccee
Q 036314           81 VTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSI  160 (347)
Q Consensus        81 ~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~  160 (347)
                      .++++.+.||+|++||+.+++         .+.++..|. .+..++|+|||+++++++.|++|++||+.+.....     
T Consensus        33 ~~~V~~~~dg~v~vwD~~t~~---------~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~-----   97 (426)
T d1hzua2          33 LFSVTLRDAGQIALVDGDSKK---------IVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTK-----   97 (426)
T ss_dssp             EEEEEETTTTEEEEEETTTCS---------EEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEE-----
T ss_pred             EEEEEEcCCCEEEEEECCCCc---------EEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeE-----
Confidence            467899999999999998765         455677764 58999999999999999999999999997653210     


Q ss_pred             eeccCCCccccccccccccccccCCccceEEEEe-CCCCeE-EEEecCCcEEEEECCCCceeeeeeeCe-----------
Q 036314          161 KKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW-PQQETI-YSASWDHSVRTWDVEMGKDLSDIFCGK-----------  227 (347)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~l-~s~s~dg~v~vwd~~~~~~~~~~~~~~-----------  227 (347)
                                     ...+....+|...+.+++| |+++++ +++..++++++||..++.....+....           
T Consensus        98 ---------------~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  162 (426)
T d1hzua2          98 ---------------VAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPE  162 (426)
T ss_dssp             ---------------EEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESC
T ss_pred             ---------------EEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCC
Confidence                           0012233456666666666 578876 555688999999999987765543221           


Q ss_pred             -eeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCC-
Q 036314          228 -ALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTA-  305 (347)
Q Consensus       228 -~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~-  305 (347)
                       ....+..++++..++.+....+.+.+++.....  .......++...+..+.|+|++.+++++...+..+.+++..++ 
T Consensus       163 ~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~  240 (426)
T d1hzua2         163 PRVAAIIASHEHPEFIVNVKETGKVLLVNYKDID--NLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRR  240 (426)
T ss_dssp             CCEEEEEECSSSSEEEEEETTTTEEEEEECSSSS--SCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTE
T ss_pred             CceeEEEECCCCCEEEEecCCCCeEEEEEecccc--ceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeeccccc
Confidence             122334444444444444455666666654322  1233444677788889999998765555445555555554332 


Q ss_pred             -----------------------------------------------------ccceeecCCCCeEEEEeecC-CCEEE-
Q 036314          306 -----------------------------------------------------WPLSVIDSHKDKVLCADWWR-GDSVI-  330 (347)
Q Consensus       306 -----------------------------------------------------~~~~~~~~h~~~v~~~~~~~-~~~l~-  330 (347)
                                                                           +...++.+|...+..++|+| +.+|+ 
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v  320 (426)
T d1hzua2         241 LSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYV  320 (426)
T ss_dssp             EEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEE
T ss_pred             EEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEE
Confidence                                                                 22345667888899999986 66787 


Q ss_pred             ------EccCCceEEEeecc
Q 036314          331 ------SGGVDSKLCVSSGV  344 (347)
Q Consensus       331 ------s~s~D~~v~vw~~~  344 (347)
                            +++.|++|+||+.-
T Consensus       321 ~~~~~~s~~~~~tv~vwd~~  340 (426)
T d1hzua2         321 DTTFNPDARISQSVAVFDLK  340 (426)
T ss_dssp             CCTTCSSHHHHTCEEEEETT
T ss_pred             eecCCCCcccCCEEEEEECC
Confidence                  56779999999954

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.85  E-value=2.5e-18  Score=146.94  Aligned_cols=244  Identities=12%  Similarity=0.066  Sum_probs=172.6

Q ss_pred             CceeeccCC-CCCEE-EEEecCCeEEEEcCC-CeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccc
Q 036314           25 DWVSAVDGS-NPGFI-LTGCYDNLGRVWKAG-GVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEE  101 (347)
Q Consensus        25 ~~v~~~~~~-~~~~l-~sg~~d~~i~iw~~~-~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~  101 (347)
                      ..+..++++ ++++| ++++.+++|++||.. +.+++.+..|.. +..+.|++++.   ..++++..++.+++|+..+++
T Consensus        32 ~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~  107 (301)
T d1l0qa2          32 SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSS-PQGVAVSPDGK---QVYVTNMASSTLSVIDTTSNT  107 (301)
T ss_dssp             SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSS-EEEEEECTTSS---EEEEEETTTTEEEEEETTTTE
T ss_pred             CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeecccc-ccccccccccc---cccccccccceeeecccccce
Confidence            456778888 45665 677889999999975 677788887765 57888887543   356788889999999987654


Q ss_pred             cccCccccceeeeeeccccceEEEEEeCCCCEE-EEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccc
Q 036314          102 LVNHPKKIRSFKILRGHKASVHSIAAETSGNMV-CSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAIS  180 (347)
Q Consensus       102 ~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l-~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (347)
                               ....+.. .....+++|++++..+ +++..++.+.+|+..+..                         ...
T Consensus       108 ---------~~~~~~~-~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~  152 (301)
T d1l0qa2         108 ---------VAGTVKT-GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKA-------------------------VIN  152 (301)
T ss_dssp             ---------EEEEEEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE-------------------------EEE
T ss_pred             ---------eeeeccc-cccceEEEeecCCCeeeeeeccccceeeeeccccc-------------------------eee
Confidence                     2333443 4567889999999866 566778999999876532                         112


Q ss_pred             cccCCccceEEEEe-CCCCeEEEEecC-CcEEEEECCCCceeeeeeeCeeeEEEEeeCCCCcEEEEe--cCCCcEEEEeC
Q 036314          181 TLVGHTQCVSSVVW-PQQETIYSASWD-HSVRTWDVEMGKDLSDIFCGKALNCIDIGGEGSALIAAG--GSDPILRIWDP  256 (347)
Q Consensus       181 ~~~~h~~~v~~~~~-~~~~~l~s~s~d-g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~--~~d~~i~iwd~  256 (347)
                      .+..+ .....+.+ +++..+++++.+ +.+.+|+...............+..+.+.+++..+++++  ..++.|++||+
T Consensus       153 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~  231 (301)
T d1l0qa2         153 TVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDT  231 (301)
T ss_dssp             EEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEET
T ss_pred             ecccC-CCceEEEeeccccceeeecccccccccccccceeeeecccccCCcceeeccccccccccccccceeeeeeeeec
Confidence            22222 23455555 567777666655 567778877666555555555667778877766554443  34578999998


Q ss_pred             CCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeec
Q 036314          257 RKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVID  312 (347)
Q Consensus       257 ~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~  312 (347)
                      ...   .....+. +...+..++|+||+.+++++++.|++|++||+++++.+.++.
T Consensus       232 ~t~---~~~~~~~-~~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~  283 (301)
T d1l0qa2         232 GTN---KITARIP-VGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMA  283 (301)
T ss_dssp             TTT---EEEEEEE-CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             CCC---eEEEEEc-CCCCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEEEe
Confidence            743   2244454 345689999999998766888999999999999998887764

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.83  E-value=2e-18  Score=156.48  Aligned_cols=231  Identities=11%  Similarity=-0.004  Sum_probs=156.4

Q ss_pred             EEEEEccCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCcccee
Q 036314           81 VTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSI  160 (347)
Q Consensus        81 ~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~  160 (347)
                      .++++.+.||+|++||..+++         .+..+..|. .+..++|+|||+++++++.|++|++||+.+.....     
T Consensus        33 ~~~v~~~d~g~v~v~D~~t~~---------v~~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~-----   97 (432)
T d1qksa2          33 LFSVTLRDAGQIALIDGSTYE---------IKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTT-----   97 (432)
T ss_dssp             EEEEEETTTTEEEEEETTTCC---------EEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCE-----
T ss_pred             EEEEEEcCCCEEEEEECCCCc---------EEEEEeCCC-CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceE-----
Confidence            356899999999999998775         455666664 58999999999999999999999999987643110     


Q ss_pred             eeccCCCccccccccccccccccCCccceEEEEe-CCCCeE-EEEecCCcEEEEECCCCceeeeeeeC------------
Q 036314          161 KKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW-PQQETI-YSASWDHSVRTWDVEMGKDLSDIFCG------------  226 (347)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~l-~s~s~dg~v~vwd~~~~~~~~~~~~~------------  226 (347)
                                     ...+....+|...+.+..| |++++| ++++.++++++||.++++.+..+...            
T Consensus        98 ---------------~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~  162 (432)
T d1qksa2          98 ---------------VAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPE  162 (432)
T ss_dssp             ---------------EEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESC
T ss_pred             ---------------EEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCC
Confidence                           0012223345555555555 578875 78888999999999998876654321            


Q ss_pred             eeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCc
Q 036314          227 KALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAW  306 (347)
Q Consensus       227 ~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~  306 (347)
                      .....+.+++++..++++...++.|.+||...... ..+..+ .+......++|+|++.++++++..+..+.++|.++++
T Consensus       163 ~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~-~~~~~i-~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~  240 (432)
T d1qksa2         163 PRVAAILASHYRPEFIVNVKETGKILLVDYTDLNN-LKTTEI-SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGK  240 (432)
T ss_dssp             CCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSE-EEEEEE-ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTE
T ss_pred             CceeEEEECCCCCEEEEEEccCCeEEEEEccCCCc-ceEEEE-cccCccccceECCCCCEEEEeccccceEEEeecccce
Confidence            12345667777777778888899999999764321 122233 4566788999999998766666677899999998876


Q ss_pred             cceeec-----CCCCeEEEEeecCCC-EEEEc-cCCceEEEeec
Q 036314          307 PLSVID-----SHKDKVLCADWWRGD-SVISG-GVDSKLCVSSG  343 (347)
Q Consensus       307 ~~~~~~-----~h~~~v~~~~~~~~~-~l~s~-s~D~~v~vw~~  343 (347)
                      .+..+.     .|........+..+. ..++. ..|++|.+|+.
T Consensus       241 ~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~  284 (432)
T d1qksa2         241 LVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGT  284 (432)
T ss_dssp             EEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEEC
T ss_pred             EEEEeccCccccccCcccceecCCCCceecccccCCceEEeccc
Confidence            554432     133333333333322 22222 23666777654

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.81  E-value=2.2e-17  Score=143.12  Aligned_cols=274  Identities=11%  Similarity=0.146  Sum_probs=175.2

Q ss_pred             EEEEEecCCeEEEEcCC--Ce-EEEEeeccCCceEEEEEeecCCCceEEE-EEccCCCcEEEEeccccccccCcccccee
Q 036314           37 FILTGCYDNLGRVWKAG--GV-CTHILEGHCGAVSSVNIIKSDGLKYVTV-ATASKDQTLRLWKFDAEELVNHPKKIRSF  112 (347)
Q Consensus        37 ~l~sg~~d~~i~iw~~~--~~-~~~~l~~h~~~V~~v~~~~~~~~~~~~l-~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~  112 (347)
                      .+|+++.|++|++|++.  +. .+.....|.+.|..|+|+|++.    +| +++..|+.|++|++...+..     .+..
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~----~L~v~~~~d~~i~~~~i~~~~~~-----~~~~   76 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKR----YLYVGVRPEFRVLAYRIAPDDGA-----LTFA   76 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSS----EEEEEETTTTEEEEEEECTTTCC-----EEEE
T ss_pred             EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCC----EEEEEECCCCeEEEEEEeCCCCc-----EEEe
Confidence            46888899999999963  32 3333446889999999999643    45 66677999999998754321     0111


Q ss_pred             eeeeccccceEEEEEeCCCCEEEEeeC-CCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEE
Q 036314          113 KILRGHKASVHSIAAETSGNMVCSGSW-DCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSS  191 (347)
Q Consensus       113 ~~~~~h~~~V~~v~~s~~~~~l~sgs~-Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~  191 (347)
                       ....+...+..++|+|||++|++++. +++|++|+.......                       .......+...+.+
T Consensus        77 -~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~  132 (333)
T d1ri6a_          77 -AESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPV-----------------------GVVDVVEGLDGCHS  132 (333)
T ss_dssp             -EEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEE-----------------------EEEEEECCCTTBCC
T ss_pred             -eecccCCCceEEEEcCCCCEEeecccCCCceeeeccccccce-----------------------ecccccCCCccceE
Confidence             11223445667999999999988875 678999986543110                       01111223334455


Q ss_pred             EEe-CCCCeEEEEec-CCcEEEEECCCCceeeeee-------eCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCC
Q 036314          192 VVW-PQQETIYSASW-DHSVRTWDVEMGKDLSDIF-------CGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTS  262 (347)
Q Consensus       192 ~~~-~~~~~l~s~s~-dg~v~vwd~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~  262 (347)
                      +.+ +++++++.++. +..+.+|+...........       .......+.+.+++...+.+....+...+|+.......
T Consensus       133 v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  212 (333)
T d1ri6a_         133 ANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGN  212 (333)
T ss_dssp             CEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSC
T ss_pred             EEeeecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccc
Confidence            555 56777666654 4568999987654332211       12345678887776666666677788888886532211


Q ss_pred             C-CeEEec------CCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeec---CCCCeEEEEeecC-CCEEE-
Q 036314          263 A-PVFQFS------SHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVID---SHKDKVLCADWWR-GDSVI-  330 (347)
Q Consensus       263 ~-~~~~~~------~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~---~h~~~v~~~~~~~-~~~l~-  330 (347)
                      . ......      ........+++++++.++++++..++.+.+|++........+.   .+.+.+++++|+| |++|+ 
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~v  292 (333)
T d1ri6a_         213 IECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIA  292 (333)
T ss_dssp             CEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEE
T ss_pred             eeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEE
Confidence            1 111111      1233566788999998878888889999999987654443332   2345677899985 77654 


Q ss_pred             EccCCceEEEeec
Q 036314          331 SGGVDSKLCVSSG  343 (347)
Q Consensus       331 s~s~D~~v~vw~~  343 (347)
                      +++.+++|+||+.
T Consensus       293 a~~~~~~v~v~~i  305 (333)
T d1ri6a_         293 AGQKSHHISVYEI  305 (333)
T ss_dssp             ECTTTCEEEEEEE
T ss_pred             EECCCCeEEEEEE
Confidence            5556799999953

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.73  E-value=1.1e-14  Score=128.17  Aligned_cols=276  Identities=10%  Similarity=-0.092  Sum_probs=170.2

Q ss_pred             CCcCCceeeccCCC-CCEEEEE-----ecCCeEEEEcC-CCeEEEEeeccCCceEEEEEeecCCCceEEEEEc-------
Q 036314           21 SLHDDWVSAVDGSN-PGFILTG-----CYDNLGRVWKA-GGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATA-------   86 (347)
Q Consensus        21 ~~h~~~v~~~~~~~-~~~l~sg-----~~d~~i~iw~~-~~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~-------   86 (347)
                      ..+..++..+++++ +..++..     +.++++.+||. .++.+..+..+...  .++|+|++.    .|+.+       
T Consensus        17 ~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~--~~a~SpDG~----~l~va~~~~~~~   90 (373)
T d2madh_          17 GAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGS----EFALASTSFSRI   90 (373)
T ss_pred             ccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCc--cEEEcCCCC----EEEEEeecCCcc
Confidence            35788889999884 5555432     23457888886 46777777766554  789999553    45554       


Q ss_pred             ---cCCCcEEEEeccccccccCccccceeeeeeccccce-------EEEEEeCCCCEEEEe--eCCCcEEEEecCCCCCC
Q 036314           87 ---SKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASV-------HSIAAETSGNMVCSG--SWDCTISLWRTNDSDAA  154 (347)
Q Consensus        87 ---s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V-------~~v~~s~~~~~l~sg--s~Dg~I~iwd~~~~~~~  154 (347)
                         +.++.|++||..++++.         ..+..+....       ..++|+++++.++..  ..++.+.+|+...... 
T Consensus        91 ~~~~~~~~v~v~D~~t~~~~---------~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~-  160 (373)
T d2madh_          91 AKGKRTDYVEVFDPVTFLPI---------ADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSD-  160 (373)
T ss_pred             cccccceEEEEEECCCCcEE---------EEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeE-
Confidence               45688999999877643         2222332222       346788888866544  3456788887654211 


Q ss_pred             CccceeeeccCCCccccccccccccccccCCccceEEEEe-CCCC-eEEEEecCCcEEEEECCCCceeeeeeeC-----e
Q 036314          155 GNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW-PQQE-TIYSASWDHSVRTWDVEMGKDLSDIFCG-----K  227 (347)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~-~l~s~s~dg~v~vwd~~~~~~~~~~~~~-----~  227 (347)
                                                  ..+.....++.+ ++++ .+++.+.|+++.+||...+.........     .
T Consensus       161 ----------------------------~~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~  212 (373)
T d2madh_         161 ----------------------------DQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQ  212 (373)
T ss_pred             ----------------------------EEEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCc
Confidence                                        111112233444 5555 4578899999999999877655433211     1


Q ss_pred             -e-eEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCC----------CeeEEEeCCCCCe---------
Q 036314          228 -A-LNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNS----------WISACKWHNKSWF---------  286 (347)
Q Consensus       228 -~-~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~----------~v~~v~~s~~~~~---------  286 (347)
                       . .....+ .++ ..++..+.++.+.+|+..... ......+..+..          ....++++|++..         
T Consensus       213 ~~~~~~~~~-~~~-~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  289 (373)
T d2madh_         213 NLLTQPAQA-NKS-GRIVWPVYSGKILQADISAAG-ATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQS  289 (373)
T ss_pred             cceeeeEEE-CCC-ceEEEecCCceEEEEEcCCCe-EEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCc
Confidence             1 122223 223 344566778899999876421 111111111111          1223344444432         


Q ss_pred             EEEEEeCCCcEEEEEcCCCccceeecCCCCeEEEEeecC-CCE--EEEccCCceEEEeecc
Q 036314          287 HLISASYDGKVMLWDLRTAWPLSVIDSHKDKVLCADWWR-GDS--VISGGVDSKLCVSSGV  344 (347)
Q Consensus       287 ~l~s~s~D~~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~--l~s~s~D~~v~vw~~~  344 (347)
                      .+++...++.+.+||..+++.+..+. +...+.+++|+| |++  +++++.|++|+||+.-
T Consensus       290 ~~~~~~~~~~v~~~d~~t~~~~~~~~-~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~  349 (373)
T d2madh_         290 AWKLHAAAKEVTSVTGLVGQTSSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAG  349 (373)
T ss_pred             eEEeecCCCeEEEEECCCCcEEEEec-CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECC
Confidence            34566777899999999998887765 566789999985 663  5789999999999965

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.71  E-value=3.5e-15  Score=128.84  Aligned_cols=262  Identities=9%  Similarity=-0.018  Sum_probs=158.7

Q ss_pred             cCCceeeccCCC-CCEE-EEEecCCeEEEEcCC-CeEEEEeeccCC-----ceEEEEEeecCCCceEEEEEcc-------
Q 036314           23 HDDWVSAVDGSN-PGFI-LTGCYDNLGRVWKAG-GVCTHILEGHCG-----AVSSVNIIKSDGLKYVTVATAS-------   87 (347)
Q Consensus        23 h~~~v~~~~~~~-~~~l-~sg~~d~~i~iw~~~-~~~~~~l~~h~~-----~V~~v~~~~~~~~~~~~l~s~s-------   87 (347)
                      +...+.++++++ ++++ ++++.|+.|++||.. ++.+..+..+..     .+..++|+|++.    .++.+.       
T Consensus        32 ~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~----~l~~~~~~~~~~~  107 (337)
T d1pbyb_          32 AGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGK----TLAIYESPVRLEL  107 (337)
T ss_dssp             CTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSS----EEEEEEEEEEECS
T ss_pred             CCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccccceeeEEEcCCCc----EEEEeecCCccee
Confidence            445577888885 5565 678889999999974 677776665543     345678888543    455554       


Q ss_pred             -----CCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeee
Q 036314           88 -----KDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKK  162 (347)
Q Consensus        88 -----~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~  162 (347)
                           .++.+.+||..+++         ....+. +...+..++|++||+++++++.|  +.+||..+.......    .
T Consensus       108 ~~~~~~~~~~~~~d~~~~~---------~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~--~~~~d~~~~~~~~~~----~  171 (337)
T d1pbyb_         108 THFEVQPTRVALYDAETLS---------RRKAFE-APRQITMLAWARDGSKLYGLGRD--LHVMDPEAGTLVEDK----P  171 (337)
T ss_dssp             SCEEECCCEEEEEETTTTE---------EEEEEE-CCSSCCCEEECTTSSCEEEESSS--EEEEETTTTEEEEEE----C
T ss_pred             eeccccccceeeccccCCe---------EEEecc-ccCCceEEEEcCCCCEEEEEcCC--cceeeeecCcEEEEe----e
Confidence                 45678888877654         223333 34567889999999999988755  678987754321100    0


Q ss_pred             ccCCCccccccccccccccccCCccc--eEEE-EeCCCCeEEEEecCCcEEEEECCCCceeeeee--eCeeeEEEEeeCC
Q 036314          163 RKGNNQVEEPQLEGEAISTLVGHTQC--VSSV-VWPQQETIYSASWDHSVRTWDVEMGKDLSDIF--CGKALNCIDIGGE  237 (347)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~h~~~--v~~~-~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~--~~~~~~~~~~~~~  237 (347)
                      .............+........+...  .... .-.+.......+.++.+.+||..++.......  ......+..+.++
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (337)
T d1pbyb_         172 IQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPA  251 (337)
T ss_dssp             STTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTT
T ss_pred             cCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEeccc
Confidence            00000000000000000000001111  1111 11233334455667789999998886544322  2334556666554


Q ss_pred             CCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeec
Q 036314          238 GSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVID  312 (347)
Q Consensus       238 ~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~  312 (347)
                      + ..++.+  ++.+++||+...   ..+..+ .+...+.+++|+|+|. +|++++.|++|+|||.++++.+.++.
T Consensus       252 ~-~~~~~~--~~~i~v~d~~~~---~~~~~~-~~~~~~~~~~~s~dG~-~l~v~~~~~~i~v~D~~t~~~v~~i~  318 (337)
T d1pbyb_         252 K-TRAFGA--YNVLESFDLEKN---ASIKRV-PLPHSYYSVNVSTDGS-TVWLGGALGDLAAYDAETLEKKGQVD  318 (337)
T ss_dssp             S-SEEEEE--ESEEEEEETTTT---EEEEEE-ECSSCCCEEEECTTSC-EEEEESBSSEEEEEETTTCCEEEEEE
T ss_pred             c-eEEEEc--cccEEEEECCCC---cEEEEE-cCCCCEEEEEECCCCC-EEEEEeCCCcEEEEECCCCcEEEEEE
Confidence            4 454443  689999998753   223444 3566789999999997 48889999999999999998887764

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.67  E-value=8.3e-14  Score=122.45  Aligned_cols=257  Identities=5%  Similarity=-0.155  Sum_probs=159.2

Q ss_pred             eccCC-CCCEEEEEe----------cCCeEEEEcCC-CeEEEEeeccCCceE-------EEEEeecCCCceEEEEEccCC
Q 036314           29 AVDGS-NPGFILTGC----------YDNLGRVWKAG-GVCTHILEGHCGAVS-------SVNIIKSDGLKYVTVATASKD   89 (347)
Q Consensus        29 ~~~~~-~~~~l~sg~----------~d~~i~iw~~~-~~~~~~l~~h~~~V~-------~v~~~~~~~~~~~~l~s~s~D   89 (347)
                      .++|+ ++.+|++++          .++.|++||.. ++.+..+..+.....       .+.|++++..  ..+.....+
T Consensus        70 ~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~--~~v~~~~~~  147 (373)
T d2madh_          70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNAD--LLFFQFAAG  147 (373)
T ss_pred             cEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCc--EEEEEEcCC
Confidence            57777 556777764          46789999975 566666666655433       3566664431  233444556


Q ss_pred             CcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCE-EEEeeCCCcEEEEecCCCCCCCccceeeeccCCCc
Q 036314           90 QTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNM-VCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQ  168 (347)
Q Consensus        90 g~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~-l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~  168 (347)
                      +.+.+|+....+             ...|.....++.++++++. +++.+.|+++.+|+...........          
T Consensus       148 ~~~~~~~~~~~~-------------~~~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~----------  204 (373)
T d2madh_         148 PAVGLVVQGGSS-------------DDQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLV----------  204 (373)
T ss_pred             CceEEeeccCCe-------------EEEEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEe----------
Confidence            778888876432             2234455678899999975 4688999999999987543211000          


Q ss_pred             cccccccccccccccCCccceEEEEeCCCCeEEEEecCCcEEEEECCCCceeeeeee-------------CeeeEEEEee
Q 036314          169 VEEPQLEGEAISTLVGHTQCVSSVVWPQQETIYSASWDHSVRTWDVEMGKDLSDIFC-------------GKALNCIDIG  235 (347)
Q Consensus       169 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~-------------~~~~~~~~~~  235 (347)
                               ......++......+.+..+..++..+.++.+.+|+...+........             ......+.++
T Consensus       205 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (373)
T d2madh_         205 ---------GAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYL  275 (373)
T ss_pred             ---------eeccccCccceeeeEEECCCceEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEe
Confidence                     000001111112233344445566777888999998876543211110             0011122222


Q ss_pred             CC---------CCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeE-EEEEeCCCcEEEEEcCCC
Q 036314          236 GE---------GSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFH-LISASYDGKVMLWDLRTA  305 (347)
Q Consensus       236 ~~---------~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~-l~s~s~D~~i~lwd~~~~  305 (347)
                      ++         +...++....++.+.+||.....   .+..+ .+...+..++|+|||.++ +++++.|++|+|||+.++
T Consensus       276 ~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~---~~~~~-~~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg  351 (373)
T d2madh_         276 KSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQ---TSSQI-SLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAG  351 (373)
T ss_pred             cCCCeEEEecCCCceEEeecCCCeEEEEECCCCc---EEEEe-cCCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCC
Confidence            22         22344556677889999986532   24444 466778999999999764 578899999999999999


Q ss_pred             ccceeecCCCCeEEEEee
Q 036314          306 WPLSVIDSHKDKVLCADW  323 (347)
Q Consensus       306 ~~~~~~~~h~~~v~~~~~  323 (347)
                      +.++++.+|......++.
T Consensus       352 ~~~~~~~~~g~~P~~l~~  369 (373)
T d2madh_         352 DQDQSTVELGSGPQVLSV  369 (373)
T ss_pred             CEEEEECCCCCCCcEEEE
Confidence            999999877666666655

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.67  E-value=2.9e-14  Score=123.10  Aligned_cols=252  Identities=9%  Similarity=0.068  Sum_probs=156.0

Q ss_pred             CcCCceeeccCCC-CCEE-EEEecCCeEEEEcCC--C-eE-EEEeeccCCceEEEEEeecCCCceEEEEEcc-CCCcEEE
Q 036314           22 LHDDWVSAVDGSN-PGFI-LTGCYDNLGRVWKAG--G-VC-THILEGHCGAVSSVNIIKSDGLKYVTVATAS-KDQTLRL   94 (347)
Q Consensus        22 ~h~~~v~~~~~~~-~~~l-~sg~~d~~i~iw~~~--~-~~-~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s-~Dg~v~~   94 (347)
                      .|.+.+..++|++ +++| +++..|+.|++|++.  + .. ......+...+..++|+|++.    .|++++ .+++|++
T Consensus        34 ~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~----~l~v~~~~~~~v~~  109 (333)
T d1ri6a_          34 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQ----FVFVGSYNAGNVSV  109 (333)
T ss_dssp             ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSS----EEEEEETTTTEEEE
T ss_pred             cCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCC----EEeecccCCCceee
Confidence            6788899999985 5677 455568999999863  2 11 112223445677899999543    455555 5779999


Q ss_pred             EeccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEee-CCCcEEEEecCCCCCCCccceeeeccCCCcccccc
Q 036314           95 WKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGS-WDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQ  173 (347)
Q Consensus        95 wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs-~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (347)
                      |+......       ........|...++++.++++++.++.++ .+..|.+|+...........               
T Consensus       110 ~~~~~~~~-------~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~---------------  167 (333)
T d1ri6a_         110 TRLEDGLP-------VGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQD---------------  167 (333)
T ss_dssp             EEEETTEE-------EEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEE---------------
T ss_pred             eccccccc-------eecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeee---------------
Confidence            99765432       11223345677788999999999887766 45679999876432110000               


Q ss_pred             ccccccccccCCccceEEEEeC-CCCeEE-EEecCCcEEEEECCCCceee----eee-------eCeeeEEEEeeCCCCc
Q 036314          174 LEGEAISTLVGHTQCVSSVVWP-QQETIY-SASWDHSVRTWDVEMGKDLS----DIF-------CGKALNCIDIGGEGSA  240 (347)
Q Consensus       174 ~~~~~~~~~~~h~~~v~~~~~~-~~~~l~-s~s~dg~v~vwd~~~~~~~~----~~~-------~~~~~~~~~~~~~~~~  240 (347)
                          .......+......++|. ++..++ +....+...+|+........    .+.       .......+.+++++..
T Consensus       168 ----~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~  243 (333)
T d1ri6a_         168 ----PAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRH  243 (333)
T ss_dssp             ----EEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSE
T ss_pred             ----ceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCc
Confidence                000001122334566664 555544 44455678888865432211    111       0123445667777777


Q ss_pred             EEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcC
Q 036314          241 LIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLR  303 (347)
Q Consensus       241 ~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~  303 (347)
                      +++++..++.+.+|++..............+...+..++|+|||.+++++++.+++|++|+++
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id  306 (333)
T d1ri6a_         244 LYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIV  306 (333)
T ss_dssp             EEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred             eeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEE
Confidence            777888889999999865433323333334556678899999998766666678999999654

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.61  E-value=5.7e-14  Score=122.47  Aligned_cols=275  Identities=6%  Similarity=-0.089  Sum_probs=153.4

Q ss_pred             ccCC-CCCEEEEE-----ecCCeEEEEcCC-CeEEEEeeccCCceEEEEEeecCCCceEEEEE----------ccCCCcE
Q 036314           30 VDGS-NPGFILTG-----CYDNLGRVWKAG-GVCTHILEGHCGAVSSVNIIKSDGLKYVTVAT----------ASKDQTL   92 (347)
Q Consensus        30 ~~~~-~~~~l~sg-----~~d~~i~iw~~~-~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s----------~s~Dg~v   92 (347)
                      .+.+ ++..++..     +.++++.+||.. ++.+..+..+...  .++|+|++.    .|+.          ++.|+.|
T Consensus         7 ~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~--~~a~SpDg~----~l~v~~~~~~~~~~g~~d~~v   80 (355)
T d2bbkh_           7 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGS----FIAHASTVFSRIARGERTDYV   80 (355)
T ss_dssp             CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSS----CEEEEEEEEEETTEEEEEEEE
T ss_pred             EeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCCC--ceEEcCCCC----EEEEEeCCCccccccCCCCEE
Confidence            3444 45554433     345689999974 6777777765444  789999654    3443          3457899


Q ss_pred             EEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEe--eCCCcEEEEecCCCCCCCccceeeeccCCCccc
Q 036314           93 RLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSG--SWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVE  170 (347)
Q Consensus        93 ~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sg--s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~  170 (347)
                      ++||+.++++.........  ...........++|++++++++.+  +.+..+.+|+..+...                 
T Consensus        81 ~v~D~~t~~~~~~~~~~~~--~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~-----------------  141 (355)
T d2bbkh_          81 EVFDPVTLLPTADIELPDA--PRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAF-----------------  141 (355)
T ss_dssp             EEECTTTCCEEEEEEETTC--CCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEE-----------------
T ss_pred             EEEECCCCCEEEEEecCCc--ceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcE-----------------
Confidence            9999987764321100000  000111223457899999987765  4567899999875421                 


Q ss_pred             cccccccccccccCCccc-------eEEEEe-CCCCeEE-EEecCCcEEEEECCCCceeeeeeeCeeeEEEEeeCCCCcE
Q 036314          171 EPQLEGEAISTLVGHTQC-------VSSVVW-PQQETIY-SASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEGSAL  241 (347)
Q Consensus       171 ~~~~~~~~~~~~~~h~~~-------v~~~~~-~~~~~l~-s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (347)
                              +..+..+...       ...+.+ +++..++ ....++.+.+++........    ...+....+.+++. .
T Consensus       142 --------~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~-~  208 (355)
T d2bbkh_         142 --------KRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPED----EFLINHPAYSQKAG-R  208 (355)
T ss_dssp             --------EEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTT----SCBCSCCEEETTTT-E
T ss_pred             --------eeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEeccccccee----cceeeeccccCCCC-e
Confidence                    1111111100       011111 2333322 22222334444433222111    11222334444444 5


Q ss_pred             EEEecCCCcEEEEeCCCCCCCCCeEEecCCC----------CCeeEEEeCCCCCeEEEEEeCC---------CcEEEEEc
Q 036314          242 IAAGGSDPILRIWDPRKPGTSAPVFQFSSHN----------SWISACKWHNKSWFHLISASYD---------GKVMLWDL  302 (347)
Q Consensus       242 la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~----------~~v~~v~~s~~~~~~l~s~s~D---------~~i~lwd~  302 (347)
                      ++.++.++.+++|++..... ..+.....+.          .....++++|++...+++....         ..|.+||.
T Consensus       209 ~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~  287 (355)
T d2bbkh_         209 LVWPTYTGKIHQIDLSSGDA-KFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDA  287 (355)
T ss_dssp             EEEEBTTSEEEEEECTTSSC-EECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEET
T ss_pred             EEEecCCCeEEEEecCCCcE-EEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeC
Confidence            66778899999999875321 1111111121          1224477888887644443322         36999999


Q ss_pred             CCCccceeecCCCCeEEEEeecC-CC--EEEEccCCceEEEeecc
Q 036314          303 RTAWPLSVIDSHKDKVLCADWWR-GD--SVISGGVDSKLCVSSGV  344 (347)
Q Consensus       303 ~~~~~~~~~~~h~~~v~~~~~~~-~~--~l~s~s~D~~v~vw~~~  344 (347)
                      .+++.+.++.. ...+.+++|+| |+  .+++++.|++|+||+..
T Consensus       288 ~t~~~~~~~~~-~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~  331 (355)
T d2bbkh_         288 KTGERLAKFEM-GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAE  331 (355)
T ss_dssp             TTCCEEEEEEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEETT
T ss_pred             CCCcEEEEecC-CCCEEEEEEcCCCCeEEEEEECCCCEEEEEECC
Confidence            99988877753 45688999985 55  36788889999999864

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.60  E-value=3.5e-13  Score=116.46  Aligned_cols=270  Identities=10%  Similarity=-0.070  Sum_probs=155.3

Q ss_pred             CCcCCceeeccCCC-CCEE-EEEecCCeEEEEcCC-CeEEEEeeccC------CceEEEEEeecCCCceEEEEEcc----
Q 036314           21 SLHDDWVSAVDGSN-PGFI-LTGCYDNLGRVWKAG-GVCTHILEGHC------GAVSSVNIIKSDGLKYVTVATAS----   87 (347)
Q Consensus        21 ~~h~~~v~~~~~~~-~~~l-~sg~~d~~i~iw~~~-~~~~~~l~~h~------~~V~~v~~~~~~~~~~~~l~s~s----   87 (347)
                      .+|...+.++++++ ++++ ++++.++.|++||.. ++.+..+....      ..+..++|+|++.    .|+.++    
T Consensus        36 ~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~----~l~v~~~~~~  111 (346)
T d1jmxb_          36 MPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGK----EVYATVNPTQ  111 (346)
T ss_dssp             CSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSS----EEEEEEEEEE
T ss_pred             cCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecccccccccCCceEEEEEecCCC----EEEEEecCCc
Confidence            34566778899885 5554 677789999999975 55555444222      2355788888543    344433    


Q ss_pred             --------CCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccce
Q 036314           88 --------KDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVS  159 (347)
Q Consensus        88 --------~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~  159 (347)
                              .++.+++|+..+++...      .+... .....+..+.+++++.+++++   ..+.+|++.+......   
T Consensus       112 ~~~~~~~~~~~~i~~~~~~~~~~~~------~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~---  178 (346)
T d1jmxb_         112 RLNDHYVVKPPRLEVFSTADGLEAK------PVRTF-PMPRQVYLMRAADDGSLYVAG---PDIYKMDVKTGKYTVA---  178 (346)
T ss_dssp             ECSSCEEECCCEEEEEEGGGGGGBC------CSEEE-ECCSSCCCEEECTTSCEEEES---SSEEEECTTTCCEEEE---
T ss_pred             ceeeeeccCcceEEEEecccceeee------EEEee-eccCceEEEEecCCCEEEEeC---CcceEEEccCCCEEEE---
Confidence                    57789999987665321      11111 112345556677777776653   4688898876432110   


Q ss_pred             eeeccCCCccccccccccccccccCCccceEE----EEe-CCCCeEEEEecCCcEEEEECCCCceeeeee--eCeeeEEE
Q 036314          160 IKKRKGNNQVEEPQLEGEAISTLVGHTQCVSS----VVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIF--CGKALNCI  232 (347)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~----~~~-~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~--~~~~~~~~  232 (347)
                       ...............+..+.........+..    ..+ .....+.++..++.+.+||+.++.......  ....+...
T Consensus       179 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (346)
T d1jmxb_         179 -LPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTG  257 (346)
T ss_dssp             -ECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEE
T ss_pred             -EecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEEEEeecccceeEEE
Confidence             0000000000000001111011111111111    111 233446677778889999998877554432  23345566


Q ss_pred             EeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeec
Q 036314          233 DIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVID  312 (347)
Q Consensus       233 ~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~  312 (347)
                      .+.+++..++ ... ++.|++||+...   +.+..+. +...+.+++|+||+.+ |++++.|+.|++||+++++.+.++.
T Consensus       258 ~~~~~~~~~~-~~~-~~~v~v~d~~~~---~~~~~~~-~~~~~~~va~s~DG~~-l~v~~~d~~v~v~D~~t~~~i~~i~  330 (346)
T d1jmxb_         258 LRSPKDPNQI-YGV-LNRLAKYDLKQR---KLIKAAN-LDHTYYCVAFDKKGDK-LYLGGTFNDLAVFNPDTLEKVKNIK  330 (346)
T ss_dssp             EECSSCTTEE-EEE-ESEEEEEETTTT---EEEEEEE-CSSCCCEEEECSSSSC-EEEESBSSEEEEEETTTTEEEEEEE
T ss_pred             EEeCCCCEEE-Eec-CCeEEEEECCCC---cEEEEEc-CCCCEEEEEEcCCCCE-EEEEeCCCcEEEEECccCCEEEEEE
Confidence            6667766554 333 468999998743   2233443 4557899999999975 8889999999999999999888776


Q ss_pred             CCC
Q 036314          313 SHK  315 (347)
Q Consensus       313 ~h~  315 (347)
                      -+.
T Consensus       331 ~p~  333 (346)
T d1jmxb_         331 LPG  333 (346)
T ss_dssp             CSS
T ss_pred             CCC
Confidence            433

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.55  E-value=6.7e-13  Score=115.53  Aligned_cols=254  Identities=8%  Similarity=-0.001  Sum_probs=146.4

Q ss_pred             CceeeccCC-CCCEEEE----------EecCCeEEEEcCC-CeEEEEeeccCC-------ceEEEEEeecCCCceEEEEE
Q 036314           25 DWVSAVDGS-NPGFILT----------GCYDNLGRVWKAG-GVCTHILEGHCG-------AVSSVNIIKSDGLKYVTVAT   85 (347)
Q Consensus        25 ~~v~~~~~~-~~~~l~s----------g~~d~~i~iw~~~-~~~~~~l~~h~~-------~V~~v~~~~~~~~~~~~l~s   85 (347)
                      +.+..++++ ++++|+.          ++.|+.|++||.. ++.+..+..+..       ....+.|++++.  ...++.
T Consensus        47 g~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~--~~~v~~  124 (355)
T d2bbkh_          47 GFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGK--TLLFYQ  124 (355)
T ss_dssp             CSSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSS--EEEEEE
T ss_pred             CCCCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCC--eeEEec
Confidence            334467788 4555554          3458899999975 556555544332       234577888553  233445


Q ss_pred             ccCCCcEEEEeccccccccCccccceeeeeeccc-------cceEEEEEeCCCCEEEE-eeCCCcEEEEecCCCCCCCcc
Q 036314           86 ASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHK-------ASVHSIAAETSGNMVCS-GSWDCTISLWRTNDSDAAGNQ  157 (347)
Q Consensus        86 ~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~-------~~V~~v~~s~~~~~l~s-gs~Dg~I~iwd~~~~~~~~~~  157 (347)
                      .+.+..+.+|+..+++..         ..+..+.       .....+++++|++.++. ...++.+.+++......    
T Consensus       125 ~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~----  191 (355)
T d2bbkh_         125 FSPAPAVGVVDLEGKAFK---------RMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHP----  191 (355)
T ss_dssp             CSSSCEEEEEETTTTEEE---------EEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSC----
T ss_pred             CCCCceeeeeecCCCcEe---------eEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccc----
Confidence            567789999998876532         2222221       12233455555554432 23333444443322110    


Q ss_pred             ceeeeccCCCccccccccccccccccCCccceEEEE-eCCCCeEEEEecCCcEEEEECCCCceee--eeee---------
Q 036314          158 VSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVV-WPQQETIYSASWDHSVRTWDVEMGKDLS--DIFC---------  225 (347)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~-~~~~~~l~s~s~dg~v~vwd~~~~~~~~--~~~~---------  225 (347)
                                                .+...+.... .+++..++.++.++.+.+|++..+....  ....         
T Consensus       192 --------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  245 (355)
T d2bbkh_         192 --------------------------EDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADG  245 (355)
T ss_dssp             --------------------------TTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTT
T ss_pred             --------------------------eecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeee
Confidence                                      0111111122 2566778888999999999998765321  1110         


Q ss_pred             --CeeeEEEEeeCCCCcEEEEec---------CCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCe-EEEEEeC
Q 036314          226 --GKALNCIDIGGEGSALIAAGG---------SDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWF-HLISASY  293 (347)
Q Consensus       226 --~~~~~~~~~~~~~~~~la~~~---------~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~-~l~s~s~  293 (347)
                        ......+++++++..++++..         ..+.|.+||+....   .+..+. +...+.+++|+||+.+ ++++++.
T Consensus       246 ~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~---~~~~~~-~~~~~~~~a~spDG~~~l~v~~~~  321 (355)
T d2bbkh_         246 WRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGE---RLAKFE-MGHEIDSINVSQDEKPLLYALSTG  321 (355)
T ss_dssp             EEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCC---EEEEEE-EEEEECEEEECCSSSCEEEEEETT
T ss_pred             eeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCc---EEEEec-CCCCEEEEEEcCCCCeEEEEEECC
Confidence              011223566655554443322         12579999987532   244443 3455789999999875 4667788


Q ss_pred             CCcEEEEEcCCCccceeecCCCCeEEEEee
Q 036314          294 DGKVMLWDLRTAWPLSVIDSHKDKVLCADW  323 (347)
Q Consensus       294 D~~i~lwd~~~~~~~~~~~~h~~~v~~~~~  323 (347)
                      |++|++||+++++.++++.++......+.+
T Consensus       322 d~~i~v~D~~tg~~~~~i~~~G~~p~~i~~  351 (355)
T d2bbkh_         322 DKTLYIHDAESGEELRSVNQLGHGPQVITT  351 (355)
T ss_dssp             TTEEEEEETTTCCEEEEECCCCSSCCEEEC
T ss_pred             CCEEEEEECCCCCEEEEEeCcCCCccEEEe
Confidence            999999999999999888765444344443

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.38  E-value=1.6e-11  Score=107.79  Aligned_cols=275  Identities=11%  Similarity=-0.042  Sum_probs=151.8

Q ss_pred             cCCceeeccCC-CCC--EE-EEEecCCeEEEE--cCC-CeEEEEeeccCCceEEEEEeecCCCceEEEEE----------
Q 036314           23 HDDWVSAVDGS-NPG--FI-LTGCYDNLGRVW--KAG-GVCTHILEGHCGAVSSVNIIKSDGLKYVTVAT----------   85 (347)
Q Consensus        23 h~~~v~~~~~~-~~~--~l-~sg~~d~~i~iw--~~~-~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s----------   85 (347)
                      +.+....+++. +++  ++ ++...+++.++|  |.. +..+..+.++...  .++|+|++.    .|+.          
T Consensus        18 ~~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~~--~~a~spDg~----~i~~~~~~~~~~~~   91 (368)
T d1mdah_          18 SDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGS----DFALASTSFARSAK   91 (368)
T ss_dssp             CCCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSS----CEEEEEEEETTTTS
T ss_pred             cCCCccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCCCC--cceECCCCC----EEEEEcccCccccc
Confidence            44445555544 343  33 345566665555  754 5666767766554  578888543    3443          


Q ss_pred             ccCCCcEEEEeccccccccCccccceeeeeecc-------ccceEEEEEeCCCCEEEEee-CCCcEEEEecCCCCCCCcc
Q 036314           86 ASKDQTLRLWKFDAEELVNHPKKIRSFKILRGH-------KASVHSIAAETSGNMVCSGS-WDCTISLWRTNDSDAAGNQ  157 (347)
Q Consensus        86 ~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h-------~~~V~~v~~s~~~~~l~sgs-~Dg~I~iwd~~~~~~~~~~  157 (347)
                      |+.|++|++||..+++...         .+..|       ......++|+|||++++.++ .++++.+||+.+...    
T Consensus        92 g~~d~~v~v~D~~t~~~~~---------~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~----  158 (368)
T d1mdah_          92 GKRTDYVEVFDPVTFLPIA---------DIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD----  158 (368)
T ss_dssp             SSEEEEEEEECTTTCCEEE---------EEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE----
T ss_pred             cccCCeEEEEECCCCcEee---------eecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcE----
Confidence            3458899999998765432         22211       11123589999999888765 579999999876421    


Q ss_pred             ceeeeccCCCccccccccccccccccCCccceEEEEeCCCCeEEEEecCCcEEEEECCCCceeeeeee-------CeeeE
Q 036314          158 VSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWPQQETIYSASWDHSVRTWDVEMGKDLSDIFC-------GKALN  230 (347)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~-------~~~~~  230 (347)
                                           ...+..+....  +.......++..+.||++.++++...........       .....
T Consensus       159 ---------------------~~~~~~~~~~~--~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (368)
T d1mdah_         159 ---------------------DQLTKSASCFH--IHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQ  215 (368)
T ss_dssp             ---------------------EEEEECSSCCC--CEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSC
T ss_pred             ---------------------eEEeeccCcce--EccCCCceEEEEcCCCCEEEEEecCCceeeeeeeccccccccccee
Confidence                                 11111111110  0111234566677888888888765432211110       01112


Q ss_pred             EEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCC----------CCeeEEEeCCCCCeEEEEEeCC------
Q 036314          231 CIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHN----------SWISACKWHNKSWFHLISASYD------  294 (347)
Q Consensus       231 ~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~----------~~v~~v~~s~~~~~~l~s~s~D------  294 (347)
                      .....+ ++..+.  ..++.+++++..... .........+.          .....++++|++..+++....+      
T Consensus       216 ~~~~~~-~g~~~~--~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~  291 (368)
T d1mdah_         216 AAQANY-PGMLVW--AVASSILQGDIPAAG-ATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLA  291 (368)
T ss_dssp             CEEETT-TTEEEE--CBSSCCEEEECCSSC-CEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTS
T ss_pred             eccccc-CcEEEE--ecCCCEEEEeecCCc-eEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeec
Confidence            223322 222322  223455555543211 10000011100          1123467788877655544333      


Q ss_pred             --CcEEEEEcCCCccceeecCCCCeEEEEeecC-CCE--EEEccCCceEEEeecc
Q 036314          295 --GKVMLWDLRTAWPLSVIDSHKDKVLCADWWR-GDS--VISGGVDSKLCVSSGV  344 (347)
Q Consensus       295 --~~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~--l~s~s~D~~v~vw~~~  344 (347)
                        ..|.+||..+++.+.++.. ...+.+++|++ |+.  +++++.|++|.||+..
T Consensus       292 ~~~~v~v~D~~t~~~~~~~~~-~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~  345 (368)
T d1mdah_         292 AAENTSSVTASVGQTSGPISN-GHDSDAIIAAQDGASDNYANSAGTEVLDIYDAA  345 (368)
T ss_dssp             CEEEEEEEESSSCCEEECCEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEESS
T ss_pred             CCceEEEEECCCCcEeEEecC-CCceeEEEECCCCCEEEEEEeCCCCeEEEEECC
Confidence              3589999999988877653 45788999985 553  6788889999999964

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.37  E-value=1.4e-11  Score=109.24  Aligned_cols=141  Identities=12%  Similarity=0.016  Sum_probs=92.5

Q ss_pred             CCCeEEEEecCCcEEEEECCCCceeeeeeeCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCC-----CCCCeEEecC
Q 036314          196 QQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPG-----TSAPVFQFSS  270 (347)
Q Consensus       196 ~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~-----~~~~~~~~~~  270 (347)
                      +++++. .+.++.+.+++......+..+..++....++++|++..+++++..+++|.+||+++..     .......+.+
T Consensus       228 dGk~~~-v~~~~v~vvd~~~~~~v~~~IPvgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~  306 (441)
T d1qnia2         228 AGNFKT-IGDSKVPVVDGRGESEFTRYIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVA  306 (441)
T ss_dssp             TTCCBC-CTTCCCCEEECSSSCSSEEEECCBSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEE
T ss_pred             CCCEEE-eCCCCcEEEEcccCCceEEEEeCCCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEe
Confidence            555443 3446677777777666677777666667788988888788899999999999975311     0111111111


Q ss_pred             CCC---CeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCC---------cc-ceee-----cCCCCeEEEEeec-CCCEEEE
Q 036314          271 HNS---WISACKWHNKSWFHLISASYDGKVMLWDLRTA---------WP-LSVI-----DSHKDKVLCADWW-RGDSVIS  331 (347)
Q Consensus       271 h~~---~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~---------~~-~~~~-----~~h~~~v~~~~~~-~~~~l~s  331 (347)
                      +..   ...-..|.+++ +.+.|...|.+|..|++...         .. +..+     .||...+.+..++ +|++|+|
T Consensus       307 ~~~~glgplh~~fd~~g-~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s  385 (441)
T d1qnia2         307 EPELGLGPLHTTFDGRG-NAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVV  385 (441)
T ss_dssp             CCBCCSCEEEEEECSSS-EEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEE
T ss_pred             ecccccCcccceecCCc-eEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEe
Confidence            111   12335788887 45788889999999997421         11 2222     4777777777786 4889999


Q ss_pred             c---cCCceE
Q 036314          332 G---GVDSKL  338 (347)
Q Consensus       332 ~---s~D~~v  338 (347)
                      +   |.|+.+
T Consensus       386 ~~k~s~dr~~  395 (441)
T d1qnia2         386 LSKFSKDRFL  395 (441)
T ss_dssp             EESCCGGGSC
T ss_pred             cCccccccCc
Confidence            9   667543

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.28  E-value=1.2e-10  Score=101.98  Aligned_cols=245  Identities=6%  Similarity=-0.110  Sum_probs=130.7

Q ss_pred             eccCC-CCCEEEEE----------ecCCeEEEEcCC-CeEEEEeeccCC-------ceEEEEEeecCCCceEEEEEc-cC
Q 036314           29 AVDGS-NPGFILTG----------CYDNLGRVWKAG-GVCTHILEGHCG-------AVSSVNIIKSDGLKYVTVATA-SK   88 (347)
Q Consensus        29 ~~~~~-~~~~l~sg----------~~d~~i~iw~~~-~~~~~~l~~h~~-------~V~~v~~~~~~~~~~~~l~s~-s~   88 (347)
                      .++++ ++++|+..          +.|++|++||.. ++.+..+..|..       ....++|+|++.    +|+.+ ..
T Consensus        69 ~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk----~l~va~~~  144 (368)
T d1mdah_          69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSA----CLLFFLFG  144 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSS----CEEEEECS
T ss_pred             cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCC----EEEEEeCC
Confidence            45566 45566654          357889999974 566666654432       223588998654    35444 46


Q ss_pred             CCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCc
Q 036314           89 DQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQ  168 (347)
Q Consensus        89 Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~  168 (347)
                      ++++.+||+.+++..         ..+..+.....   +......+++.+.||++.+++...........    .     
T Consensus       145 ~~~v~~~d~~~~~~~---------~~~~~~~~~~~---~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~----~-----  203 (368)
T d1mdah_         145 SSAAAGLSVPGASDD---------QLTKSASCFHI---HPGAAATHYLGSCPASLAASDLAAAPAAAGIV----G-----  203 (368)
T ss_dssp             SSCEEEEEETTTEEE---------EEEECSSCCCC---EEEETTEEECCCCTTSCEEEECCSSCCCCEEC----C-----
T ss_pred             CCeEEEEECCCCcEe---------EEeeccCcceE---ccCCCceEEEEcCCCCEEEEEecCCceeeeee----e-----
Confidence            799999999876532         22333322211   11223466667778888877765432110000    0     


Q ss_pred             cccccccccccccccCCccceEEEEeCCCCeEEEEecCCcEEEEECCCCceeeee----------e---eCeeeEEEEee
Q 036314          169 VEEPQLEGEAISTLVGHTQCVSSVVWPQQETIYSASWDHSVRTWDVEMGKDLSDI----------F---CGKALNCIDIG  235 (347)
Q Consensus       169 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~----------~---~~~~~~~~~~~  235 (347)
                                ......+...+....+.....++. ..++.+.+++...+......          .   .......++++
T Consensus       204 ----------~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~  272 (368)
T d1mdah_         204 ----------AQCTGAQNCSSQAAQANYPGMLVW-AVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKL  272 (368)
T ss_dssp             ----------CCSCTTSCBCSCCEEETTTTEEEE-CBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEE
T ss_pred             ----------cccccccccceeecccccCcEEEE-ecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEc
Confidence                      000111111112222222122111 22344444444333221100          0   00112235566


Q ss_pred             CCCCcEEEEecCC--------CcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCe-EEEEEeCCCcEEEEEcCCCc
Q 036314          236 GEGSALIAAGGSD--------PILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWF-HLISASYDGKVMLWDLRTAW  306 (347)
Q Consensus       236 ~~~~~~la~~~~d--------~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~-~l~s~s~D~~i~lwd~~~~~  306 (347)
                      +++..++++...+        ..|.+||.....   .+.++. +...+.+++|+||+.. ++++++.|++|++||..+++
T Consensus       273 ~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~---~~~~~~-~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk  348 (368)
T d1mdah_         273 KNTDGIMILTVEHSRSCLAAAENTSSVTASVGQ---TSGPIS-NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQ  348 (368)
T ss_dssp             TTTTEEEEEEEECSSCTTSCEEEEEEEESSSCC---EEECCE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCE
T ss_pred             CCCCEEEEEecCCCceeecCCceEEEEECCCCc---EeEEec-CCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCC
Confidence            6655544433222        358899986432   233433 3456888999999864 46777889999999999999


Q ss_pred             cceeecC
Q 036314          307 PLSVIDS  313 (347)
Q Consensus       307 ~~~~~~~  313 (347)
                      .+.++.-
T Consensus       349 ~~~~i~~  355 (368)
T d1mdah_         349 DQSSVEL  355 (368)
T ss_dssp             EEEECCC
T ss_pred             EEEEEEC
Confidence            8888764

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.23  E-value=9.3e-10  Score=99.52  Aligned_cols=124  Identities=10%  Similarity=-0.030  Sum_probs=84.2

Q ss_pred             CCCcCCceeeccCC-CCCEEEEEe---------cCCeEEEEcCCCeEEEEeeccCCceEEEEEeecCCCceEEEEEccCC
Q 036314           20 PSLHDDWVSAVDGS-NPGFILTGC---------YDNLGRVWKAGGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKD   89 (347)
Q Consensus        20 ~~~h~~~v~~~~~~-~~~~l~sg~---------~d~~i~iw~~~~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~D   89 (347)
                      ...|...|.++.|| ++++|+.++         .++.+.+||+.+.....+..|.+.+..+.|+|++.    .||. ..+
T Consensus        57 ~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~~~l~~~~~~~~~~~~SPDG~----~ia~-~~~  131 (470)
T d2bgra1          57 FDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERIPNNTQWVTWSPVGH----KLAY-VWN  131 (470)
T ss_dssp             TTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCTTEEEEEECSSTT----CEEE-EET
T ss_pred             hhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCcccccccCCccccccccccCcc----eeeE-eec
Confidence            34567889999998 456888774         35678899998777778899999999999999654    4565 456


Q ss_pred             CcEEEEeccccccccCccccceeeeeec---------cccceEEEEEeCCCCEEEEeeCCCc-EEEEec
Q 036314           90 QTLRLWKFDAEELVNHPKKIRSFKILRG---------HKASVHSIAAETSGNMVCSGSWDCT-ISLWRT  148 (347)
Q Consensus        90 g~v~~wd~~~~~~~~~~~~~~~~~~~~~---------h~~~V~~v~~s~~~~~l~sgs~Dg~-I~iwd~  148 (347)
                      +.+.+|+..+++..........-..+.+         +.+....+.|+|||+.|+....|.+ ++.|.+
T Consensus       132 ~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~~~  200 (470)
T d2bgra1         132 NDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEY  200 (470)
T ss_dssp             TEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEE
T ss_pred             ccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEecCCcCceEEE
Confidence            7899999887653221110000001111         2233456789999999998877655 665554

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.05  E-value=6.1e-09  Score=92.05  Aligned_cols=235  Identities=9%  Similarity=0.030  Sum_probs=137.8

Q ss_pred             eEEEEEccCCCcEEEEeccccccccCc-----ccc----------------ceeeeeeccccceEEEEEeCCCCEEE-Ee
Q 036314           80 YVTVATASKDQTLRLWKFDAEELVNHP-----KKI----------------RSFKILRGHKASVHSIAAETSGNMVC-SG  137 (347)
Q Consensus        80 ~~~l~s~s~Dg~v~~wd~~~~~~~~~~-----~~~----------------~~~~~~~~h~~~V~~v~~s~~~~~l~-sg  137 (347)
                      ...++|++.+|+|++|++.+.+.+...     ...                ........|........++|||++|+ +.
T Consensus        11 ~y~f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d   90 (441)
T d1qnia2          11 YYGFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFIND   90 (441)
T ss_dssp             EEEEEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEE
T ss_pred             EEEEEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEc
Confidence            345788999999999999876543210     000                00111223555566666789999885 55


Q ss_pred             eCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccc-cCCccceEEEEe-CCCCe--EEEEecCC------
Q 036314          138 SWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTL-VGHTQCVSSVVW-PQQET--IYSASWDH------  207 (347)
Q Consensus       138 s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~-~~~~~--l~s~s~dg------  207 (347)
                      ..+.+|.++|+.+.+..                         +.+ ..+......+++ +++++  ++..+.+.      
T Consensus        91 ~~~~rVavIDl~t~k~~-------------------------~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~d  145 (441)
T d1qnia2          91 KANTRVARIRLDIMKTD-------------------------KITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPND  145 (441)
T ss_dssp             TTTTEEEEEETTTTEEE-------------------------EEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCS
T ss_pred             CCCCEEEEEECCCCcEe-------------------------eEEecCCCCCccceEEeccCCEEEEEeccCCcccccCc
Confidence            68889999999865321                         111 112234555665 35553  33333221      


Q ss_pred             -----------cEEEEECCCCceeeeeeeCeeeEEEEeeCCCCcEEEEecC-----------------------------
Q 036314          208 -----------SVRTWDVEMGKDLSDIFCGKALNCIDIGGEGSALIAAGGS-----------------------------  247 (347)
Q Consensus       208 -----------~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~-----------------------------  247 (347)
                                 .+..+|..+.+...++.....+..+++++++...++++..                             
T Consensus       146 g~~~~~~~~~~~~~~iD~~t~~v~~qI~v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~  225 (441)
T d1qnia2         146 GTDFSLDNSYTMFTAIDAETMDVAWQVIVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAA  225 (441)
T ss_dssp             SSCCCGGGEEEEEEEEETTTCSEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHH
T ss_pred             ccccccccccceEEeecCccceeeEEEecCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEE
Confidence                       2345777776666655555555666776665544444322                             


Q ss_pred             -----------CCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCcc--------c
Q 036314          248 -----------DPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWP--------L  308 (347)
Q Consensus       248 -----------d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~--------~  308 (347)
                                 ++.+.+++...   ...+..+..+. ....+.++|||.+.++++..|++|.|||+++.+.        .
T Consensus       226 ~~dGk~~~v~~~~v~vvd~~~~---~~v~~~IPvgk-sPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~  301 (441)
T d1qnia2         226 VKAGNFKTIGDSKVPVVDGRGE---SEFTRYIPVPK-NPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELR  301 (441)
T ss_dssp             HHTTCCBCCTTCCCCEEECSSS---CSSEEEECCBS-SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGG
T ss_pred             ecCCCEEEeCCCCcEEEEcccC---CceEEEEeCCC-CccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcc
Confidence                       23344443321   12344454433 3467899999998888999999999999976321        1


Q ss_pred             eeecCCCCe---EEEEeecC-CCEEEEccCCceEEEeec
Q 036314          309 SVIDSHKDK---VLCADWWR-GDSVISGGVDSKLCVSSG  343 (347)
Q Consensus       309 ~~~~~h~~~---v~~~~~~~-~~~l~s~s~D~~v~vw~~  343 (347)
                      ..+.++.+.   .+-..|.+ |+.+.|...|+.|..|..
T Consensus       302 ~~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~  340 (441)
T d1qnia2         302 DTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNI  340 (441)
T ss_dssp             GGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEH
T ss_pred             eEEEeecccccCcccceecCCceEEEcccccceEEEecc
Confidence            122222221   23346754 666889999999999974

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.96  E-value=1.8e-06  Score=71.91  Aligned_cols=236  Identities=13%  Similarity=0.183  Sum_probs=143.8

Q ss_pred             ceeeccCC-CCCEEEEEecCCeEEEEcCCCeEEEEeecc------CCceEEEEEeecCCCceEEEEEccCCCcEEEEecc
Q 036314           26 WVSAVDGS-NPGFILTGCYDNLGRVWKAGGVCTHILEGH------CGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFD   98 (347)
Q Consensus        26 ~v~~~~~~-~~~~l~sg~~d~~i~iw~~~~~~~~~l~~h------~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~   98 (347)
                      .-..++.+ +++++++-..++.|++||..|..+..+...      ...-..+.+..+.+  ...++..+.++.|+.++..
T Consensus        24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~  101 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSG--DIIVTERSPTHQIQIYNQY  101 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTT--EEEEEECGGGCEEEEECTT
T ss_pred             CccEEEEcCCCCEEEEECCCCEEEEEeCCCCEEEEecccCCCccccccccccccccccc--ccceeccCCcccccccccc
Confidence            34567765 567888877788999999988877666321      11223455444322  2344555666788888754


Q ss_pred             ccccccCccccceeeee-eccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCcccccccccc
Q 036314           99 AEELVNHPKKIRSFKIL-RGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGE  177 (347)
Q Consensus        99 ~~~~~~~~~~~~~~~~~-~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (347)
                      ..          ....+ .........+++.++|+++++....+.+.+++....                          
T Consensus       102 g~----------~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g~--------------------------  145 (279)
T d1q7fa_         102 GQ----------FVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGN--------------------------  145 (279)
T ss_dssp             SC----------EEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSC--------------------------
T ss_pred             cc----------ceeecCCCcccccceeccccCCcEEEEeeccceeeEeccCCc--------------------------
Confidence            32          11122 123455678889999998888777777887764321                          


Q ss_pred             ccccc--cCCccceEEEEeC-CCCeEEEEecCCcEEEEECCCCceeeeeeeC---eeeEEEEeeCCCCcEEEEec-CCCc
Q 036314          178 AISTL--VGHTQCVSSVVWP-QQETIYSASWDHSVRTWDVEMGKDLSDIFCG---KALNCIDIGGEGSALIAAGG-SDPI  250 (347)
Q Consensus       178 ~~~~~--~~h~~~v~~~~~~-~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~la~~~-~d~~  250 (347)
                      .+..+  ..+......+++. ++..+++....+.|++||. .++.+..+...   .....+++.+.+ +++++-. .+..
T Consensus       146 ~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~-~G~~~~~~g~~g~~~~P~giavD~~G-~i~Vad~~~~~~  223 (279)
T d1q7fa_         146 VLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNG-EILIADNHNNFN  223 (279)
T ss_dssp             EEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTC-CEEEEECSSSCE
T ss_pred             eeecccccccccccceeeeccceeEEeeeccccceeeeec-CCceeeeecccccccCCcccccccCC-eEEEEECCCCcE
Confidence            11111  1223344556654 4555666677788999996 45555554321   235677887765 4665543 4557


Q ss_pred             EEEEeCCCCCCCCCeEEec--CCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCcc
Q 036314          251 LRIWDPRKPGTSAPVFQFS--SHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWP  307 (347)
Q Consensus       251 i~iwd~~~~~~~~~~~~~~--~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~  307 (347)
                      |.+|+..  +.  .+.++.  ........+++.|++ . |+.++.+.+|++|...+..+
T Consensus       224 v~~f~~~--G~--~~~~~~~~~~~~~p~~vav~~dG-~-l~V~~~n~~v~~fr~~~~~~  276 (279)
T d1q7fa_         224 LTIFTQD--GQ--LISALESKVKHAQCFDVALMDDG-S-VVLASKDYRLYIYRYVQLAP  276 (279)
T ss_dssp             EEEECTT--SC--EEEEEEESSCCSCEEEEEEETTT-E-EEEEETTTEEEEEECSCCCC
T ss_pred             EEEECCC--CC--EEEEEeCCCCCCCEeEEEEeCCC-c-EEEEeCCCeEEEEEeeeecC
Confidence            9999854  22  233443  223457789999998 3 55567899999999876544

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.95  E-value=2.3e-07  Score=83.33  Aligned_cols=102  Identities=11%  Similarity=0.144  Sum_probs=74.8

Q ss_pred             CCCEEEEEecCCeEEEEcCC-CeEEEEee-----ccCCceEEEEEeecCCCceEEEEEcc---------CCCcEEEEecc
Q 036314           34 NPGFILTGCYDNLGRVWKAG-GVCTHILE-----GHCGAVSSVNIIKSDGLKYVTVATAS---------KDQTLRLWKFD   98 (347)
Q Consensus        34 ~~~~l~sg~~d~~i~iw~~~-~~~~~~l~-----~h~~~V~~v~~~~~~~~~~~~l~s~s---------~Dg~v~~wd~~   98 (347)
                      ++.++..  .|+.+.+||.. ++....+.     .|...|.++.|+|++    ..|+.++         .++.+.+||+.
T Consensus        27 d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg----~~i~~~~~~~~~~r~s~~~~~~l~d~~  100 (470)
T d2bgra1          27 DHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDG----QFILLEYNYVKQWRHSYTASYDIYDLN  100 (470)
T ss_dssp             SSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTS----SEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred             CCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCC----CEEEEEECCcceeeeccCceEEEEECC
Confidence            3445543  47889999975 55544444     445789999999954    3566664         35788999998


Q ss_pred             ccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCC
Q 036314           99 AEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSD  152 (347)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~  152 (347)
                      ++++          ..+..|...+..+.|||||+.+|.. .|+.+.+|+...+.
T Consensus       101 ~~~~----------~~l~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~  143 (470)
T d2bgra1         101 KRQL----------ITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLP  143 (470)
T ss_dssp             TTEE----------CCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSC
T ss_pred             CCcc----------cccccCCccccccccccCcceeeEe-ecccceEEECCCCc
Confidence            7643          3456788889999999999999874 67789999887653

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.90  E-value=5.6e-07  Score=75.96  Aligned_cols=237  Identities=11%  Similarity=0.005  Sum_probs=143.9

Q ss_pred             CceeeccCC-CCCEEEEEecCCeEEEEcCCCeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccc
Q 036314           25 DWVSAVDGS-NPGFILTGCYDNLGRVWKAGGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELV  103 (347)
Q Consensus        25 ~~v~~~~~~-~~~~l~sg~~d~~i~iw~~~~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~  103 (347)
                      .++..++++ ++.+++|...+++|+.|+..+... .+....+.+.+++|.+++.    .+++...++.+..|+....+. 
T Consensus        28 ~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~~~-~~~~~~~~~~gla~~~dG~----l~v~~~~~~~~~~~~~~~~~~-  101 (302)
T d2p4oa1          28 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQ-IHATVEGKVSGLAFTSNGD----LVATGWNADSIPVVSLVKSDG-  101 (302)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCCEE-EEEECSSEEEEEEECTTSC----EEEEEECTTSCEEEEEECTTS-
T ss_pred             CCcCCEEECCCCCEEEEeCCCCEEEEEeCCCCEE-EEEcCCCCcceEEEcCCCC----eEEEecCCceEEEEEeccccc-
Confidence            367778877 567888988899999999877643 4555667789999988543    577777788888888654321 


Q ss_pred             cCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCcccccccccccccccc
Q 036314          104 NHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLV  183 (347)
Q Consensus       104 ~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (347)
                          ....+.. .......+.+++.++++++++.+.++.+..++......     .......         ... .....
T Consensus       102 ----~~~~~~~-~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~-----~~~~~~~---------~~~-~~~~~  161 (302)
T d2p4oa1         102 ----TVETLLT-LPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSG-----SIWLEHP---------MLA-RSNSE  161 (302)
T ss_dssp             ----CEEEEEE-CTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEE-----EEEEECG---------GGS-CSSTT
T ss_pred             ----ceeeccc-cCCccccceeEEccCCCEEeeccccccceeeeccCCcc-----eeEecCC---------ccc-eeecc
Confidence                1111111 12345578899999999999888888888887654311     0000000         000 00011


Q ss_pred             CCccceEEEEeCCCCeEEEEecCCcEEEEECCCCceeeee---eeCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCC
Q 036314          184 GHTQCVSSVVWPQQETIYSASWDHSVRTWDVEMGKDLSDI---FCGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPG  260 (347)
Q Consensus       184 ~h~~~v~~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~---~~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~  260 (347)
                      ........+.+..+..+++.+..+.|..++..........   ........+++.+++ ++.++...++.|..++...  
T Consensus       162 ~~~~~~ngi~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG-~l~va~~~~~~V~~i~p~G--  238 (302)
T d2p4oa1         162 SVFPAANGLKRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEG-NLYGATHIYNSVVRIAPDR--  238 (302)
T ss_dssp             CCSCSEEEEEEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTC-CEEEECBTTCCEEEECTTC--
T ss_pred             CcccccccccccCCceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCC-CEEEEEcCCCcEEEECCCC--
Confidence            1122345566544445666777888888887654333221   122334557776655 5777777789999998752  


Q ss_pred             CCCCeEEecCCCCCeeEEEe---CCCCCeEEEE
Q 036314          261 TSAPVFQFSSHNSWISACKW---HNKSWFHLIS  290 (347)
Q Consensus       261 ~~~~~~~~~~h~~~v~~v~~---s~~~~~~l~s  290 (347)
                      ....+...........+++|   ++|+..+.++
T Consensus       239 ~~~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvt  271 (302)
T d2p4oa1         239 STTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVV  271 (302)
T ss_dssp             CEEEEECGGGTCTTEEEEEECCSTTTTTEEEEE
T ss_pred             CEEEEEecCCCCCCceEEEEcCCCCCCCEEEEE
Confidence            21122333334456789999   6676654444

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.86  E-value=1.2e-05  Score=65.76  Aligned_cols=239  Identities=10%  Similarity=0.069  Sum_probs=128.6

Q ss_pred             eEEEEcCCCeEEEEeeccCCceEEEEEeecCCCceEEEE-EccCCCc--EEEEeccccccccCccccceeeeeeccccce
Q 036314           46 LGRVWKAGGVCTHILEGHCGAVSSVNIIKSDGLKYVTVA-TASKDQT--LRLWKFDAEELVNHPKKIRSFKILRGHKASV  122 (347)
Q Consensus        46 ~i~iw~~~~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~-s~s~Dg~--v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V  122 (347)
                      .|.|-|..|...+.+..+...+.+-+|+|++.    .|| +....+.  +.+.+...+.          ...+..+....
T Consensus        20 ~l~i~d~dG~~~~~l~~~~~~~~sP~wSPDGk----~IAf~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~   85 (269)
T d2hqsa1          20 ELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGS----KLAYVTFESGRSALVIQTLANGA----------VRQVASFPRHN   85 (269)
T ss_dssp             EEEEEETTSCSCEEEEEESSCEEEEEECTTSS----EEEEEECTTSSCEEEEEETTTCC----------EEEEECCSSCE
T ss_pred             EEEEEcCCCCCcEEEecCCCceeeeEECCCCC----EEEEEEeeccCcceeeeecccCc----------eeEEeeeeccc
Confidence            35555666655555666677788999999654    344 3334443  3333433321          22345567778


Q ss_pred             EEEEEeCCCCEEEEeeC-CCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEeCCCCe-E
Q 036314          123 HSIAAETSGNMVCSGSW-DCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWPQQET-I  200 (347)
Q Consensus       123 ~~v~~s~~~~~l~sgs~-Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l  200 (347)
                      ....|+|+|+.++..+. ++...++.......                       ..................++++. +
T Consensus        86 ~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~  142 (269)
T d2hqsa1          86 GAPAFSPDGSKLAFALSKTGSLNLYVMDLASG-----------------------QIRQVTDGRSNNTEPTWFPDSQNLA  142 (269)
T ss_dssp             EEEEECTTSSEEEEEECTTSSCEEEEEETTTC-----------------------CEEECCCCSSCEEEEEECTTSSEEE
T ss_pred             ccceecCCCCeeeEeeecCCccceeecccccc-----------------------cceeeeeccccccccccccccccce
Confidence            88899999998875443 33333322211100                       00001111111112222234443 4


Q ss_pred             EEEecCCc--EEEEECCCCceeeeeeeCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEE
Q 036314          201 YSASWDHS--VRTWDVEMGKDLSDIFCGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISAC  278 (347)
Q Consensus       201 ~s~s~dg~--v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v  278 (347)
                      ++...++.  |.+.++..+................+++++..++......+...+|.......   ...+..+.......
T Consensus       143 ~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~p  219 (269)
T d2hqsa1         143 FTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG---GVQVLSSTFLDETP  219 (269)
T ss_dssp             EEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTC---CEEECCCSSSCEEE
T ss_pred             ecccccCCceEeeeecccccceeeecccccccccccccccceeEEEeecCCceeeeEeecccc---cceEeecCccccce
Confidence            44445554  44455555433322222333445567777665555555556666655432221   12333455566778


Q ss_pred             EeCCCCCeEEEEEeC--CCcEEEEEcCCCccceeecCCCCeEEEEeecC
Q 036314          279 KWHNKSWFHLISASY--DGKVMLWDLRTAWPLSVIDSHKDKVLCADWWR  325 (347)
Q Consensus       279 ~~s~~~~~~l~s~s~--D~~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~  325 (347)
                      .|+|||..++.+...  ...+.+++++.+. ...+....+.+...+|+|
T Consensus       220 ~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~-~~~lt~~~g~~~~p~WSP  267 (269)
T d2hqsa1         220 SLAPNGTMVIYSSSQGMGSVLNLVSTDGRF-KARLPATDGQVKFPAWSP  267 (269)
T ss_dssp             EECTTSSEEEEEEEETTEEEEEEEETTSCC-EEECCCSSSEEEEEEECC
T ss_pred             EECCCCCEEEEEEcCCCCcEEEEEECCCCC-EEEEeCCCCcEEeEEeCC
Confidence            999999875555443  3468889998654 455666677888889987

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.79  E-value=5.1e-06  Score=69.85  Aligned_cols=218  Identities=11%  Similarity=0.021  Sum_probs=133.2

Q ss_pred             ceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEE
Q 036314           66 AVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISL  145 (347)
Q Consensus        66 ~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~i  145 (347)
                      .+..+++.+++    .++++...+++|..|+....           ...+......+.+++|++||+++++...++.+.+
T Consensus        29 ~~e~iAv~pdG----~l~vt~~~~~~I~~i~p~g~-----------~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~   93 (302)
T d2p4oa1          29 FLENLASAPDG----TIFVTNHEVGEIVSITPDGN-----------QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPV   93 (302)
T ss_dssp             CEEEEEECTTS----CEEEEETTTTEEEEECTTCC-----------EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEE
T ss_pred             CcCCEEECCCC----CEEEEeCCCCEEEEEeCCCC-----------EEEEEcCCCCcceEEEcCCCCeEEEecCCceEEE
Confidence            36678998854    36888888999988885532           1233445677899999999999998888888888


Q ss_pred             EecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEe-CCCCeEEEEecCCcEEEEECCCCceeeeee
Q 036314          146 WRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDIF  224 (347)
Q Consensus       146 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~  224 (347)
                      |+........                     ..+.. .........+.+ +++..+++-+.++.+..+|...+.......
T Consensus        94 ~~~~~~~~~~---------------------~~~~~-~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~  151 (302)
T d2p4oa1          94 VSLVKSDGTV---------------------ETLLT-LPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLE  151 (302)
T ss_dssp             EEEECTTSCE---------------------EEEEE-CTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             EEecccccce---------------------eeccc-cCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEec
Confidence            8754321100                     00000 012234566766 455566666777888888877654221111


Q ss_pred             e-----------CeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeC
Q 036314          225 C-----------GKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASY  293 (347)
Q Consensus       225 ~-----------~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~  293 (347)
                      .           ......+.+.  +..++.+.+..+.|..+++...........+. +......+++.++|. +.++...
T Consensus       152 ~~~~~~~~~~~~~~~~ngi~~~--~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~pdgia~d~dG~-l~va~~~  227 (302)
T d2p4oa1         152 HPMLARSNSESVFPAANGLKRF--GNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV-EQTNIDDFAFDVEGN-LYGATHI  227 (302)
T ss_dssp             CGGGSCSSTTCCSCSEEEEEEE--TTEEEEEETTTTEEEEEEBCTTSCBCCCEEEE-ESCCCSSEEEBTTCC-EEEECBT
T ss_pred             CCccceeeccCccccccccccc--CCceeeecCCCCeEEecccccccccccccccc-CCCCCcceEECCCCC-EEEEEcC
Confidence            1           0123344443  34577777888999999876433222222221 233456799999985 5666677


Q ss_pred             CCcEEEEEcCCCcc-ceeecCCCCeEEEEeec
Q 036314          294 DGKVMLWDLRTAWP-LSVIDSHKDKVLCADWW  324 (347)
Q Consensus       294 D~~i~lwd~~~~~~-~~~~~~h~~~v~~~~~~  324 (347)
                      +++|..++...... +......-....+++|.
T Consensus       228 ~~~V~~i~p~G~~~~~~~~~~~~~~pt~vafg  259 (302)
T d2p4oa1         228 YNSVVRIAPDRSTTIIAQAEQGVIGSTAVAFG  259 (302)
T ss_dssp             TCCEEEECTTCCEEEEECGGGTCTTEEEEEEC
T ss_pred             CCcEEEECCCCCEEEEEecCCCCCCceEEEEc
Confidence            88999998864321 22223333457889993

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.55  E-value=0.00013  Score=62.75  Aligned_cols=260  Identities=10%  Similarity=0.058  Sum_probs=134.5

Q ss_pred             cCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEE--EEee-C
Q 036314           63 HCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMV--CSGS-W  139 (347)
Q Consensus        63 h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l--~sgs-~  139 (347)
                      ....+..|+|++++.    .|+++.. +.+..|.+....-+      ..... .........++++++++.+  ++++ .
T Consensus        38 ~~~~~s~la~s~d~~----~ly~~~~-~~~~~~~i~~~~~~------~~~~~-~~~~~~p~~v~~~~~~~~~~v~~a~~~  105 (365)
T d1jofa_          38 QDEPISWMTFDHERK----NIYGAAM-KKWSSFAVKSPTEI------VHEAS-HPIGGHPRANDADTNTRAIFLLAAKQP  105 (365)
T ss_dssp             TTCCCSEEEECTTSS----EEEEEEB-TEEEEEEEEETTEE------EEEEE-EECCSSGGGGCTTSCCEEEEEEECSST
T ss_pred             CCCCCCEEEEcCCCC----EEEEEeC-CcEEEEEEeCCCCe------EEEee-ecCCCCcEEEEECCCCCEEEEEEecCC
Confidence            444466799988543    4655544 56888887643211      00000 1111223456778888743  3332 2


Q ss_pred             CCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEe-CCCCeEEEEec-CCcEEEEECCCC
Q 036314          140 DCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW-PQQETIYSASW-DHSVRTWDVEMG  217 (347)
Q Consensus       140 Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~l~s~s~-dg~v~vwd~~~~  217 (347)
                      .++|..+.+..............   ...     ..+.....-......+.++.| |++++++++.. ...|.+|+....
T Consensus       106 ~~~v~~~~~~~~~~~~~~~~~~~---~~~-----~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~  177 (365)
T d1jofa_         106 PYAVYANPFYKFAGYGNVFSVSE---TGK-----LEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLAS  177 (365)
T ss_dssp             TCCEEEEEESSSCCEEEEEEECT---TCC-----EEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred             CCEEEEeEccCCCCcceeEeeee---cce-----ecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCC
Confidence            45666554432211100000000   000     000000000011123567777 67887777654 346888876443


Q ss_pred             ceeee---ee---eCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEe-----------------cCCCCC
Q 036314          218 KDLSD---IF---CGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQF-----------------SSHNSW  274 (347)
Q Consensus       218 ~~~~~---~~---~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~-----------------~~h~~~  274 (347)
                      ..+..   ..   .+.....+.+++++..+.++.-.+++|.+||+..... ......                 ..+...
T Consensus       178 g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (365)
T d1jofa_         178 GEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATH-MPVYTHHSFPLIPPGIPDRDPETGKGLYR  256 (365)
T ss_dssp             SCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTC-CEEEEEEEEESSCTTCCCBCTTTSSBSEE
T ss_pred             CceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCc-eEEEEeeeeccccccccccccccccccCC
Confidence            22211   11   1345677899888776777888899999999864321 111111                 011223


Q ss_pred             eeEEEeCCCCCeEEEEEeCCCc-----EEEEEcCCCccceee------cCCCCeEEEEeecC--CCEE-EEccCCceEEE
Q 036314          275 ISACKWHNKSWFHLISASYDGK-----VMLWDLRTAWPLSVI------DSHKDKVLCADWWR--GDSV-ISGGVDSKLCV  340 (347)
Q Consensus       275 v~~v~~s~~~~~~l~s~s~D~~-----i~lwd~~~~~~~~~~------~~h~~~v~~~~~~~--~~~l-~s~s~D~~v~v  340 (347)
                      ...+.++|++.++.++...+..     |-.|++.....+...      .......++++++|  |++| ++...+++|.|
T Consensus       257 ~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v  336 (365)
T d1jofa_         257 ADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEI  336 (365)
T ss_dssp             EEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEE
T ss_pred             ccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEE
Confidence            5678999999875555544333     777777653222211      11223456788875  7765 55567899999


Q ss_pred             eec
Q 036314          341 SSG  343 (347)
Q Consensus       341 w~~  343 (347)
                      |+.
T Consensus       337 ~~~  339 (365)
T d1jofa_         337 YRW  339 (365)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            963

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.54  E-value=0.00012  Score=59.49  Aligned_cols=199  Identities=10%  Similarity=-0.035  Sum_probs=102.3

Q ss_pred             eeccccceEEEEEeCCCCEEEEe-eCCCc--EEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEE
Q 036314          115 LRGHKASVHSIAAETSGNMVCSG-SWDCT--ISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSS  191 (347)
Q Consensus       115 ~~~h~~~V~~v~~s~~~~~l~sg-s~Dg~--I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~  191 (347)
                      +..+...+.+-+|||||+.||=. ...+.  +.+.+.....                          ...+..+......
T Consensus        34 l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~   87 (269)
T d2hqsa1          34 VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA--------------------------VRQVASFPRHNGA   87 (269)
T ss_dssp             EEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC--------------------------EEEEECCSSCEEE
T ss_pred             EecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCc--------------------------eeEEeeeeccccc
Confidence            33456778889999999988743 33333  3333332211                          1122334445555


Q ss_pred             EEe-CCCCeEEEEec-CCcEEEEEC--CCCceeeeeeeCeeeEEEEeeCCCCcEEEEecCCCcEEE--EeCCCCCCCCCe
Q 036314          192 VVW-PQQETIYSASW-DHSVRTWDV--EMGKDLSDIFCGKALNCIDIGGEGSALIAAGGSDPILRI--WDPRKPGTSAPV  265 (347)
Q Consensus       192 ~~~-~~~~~l~s~s~-dg~v~vwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~d~~i~i--wd~~~~~~~~~~  265 (347)
                      ..| ++++.++..+. ++...++..  ...................+...+...+.+...++...+  .++...    ..
T Consensus        88 ~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~----~~  163 (269)
T d2hqsa1          88 PAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGG----AP  163 (269)
T ss_dssp             EEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSS----CC
T ss_pred             ceecCCCCeeeEeeecCCccceeecccccccceeeeeccccccccccccccccceecccccCCceEeeeecccc----cc
Confidence            666 56776655443 333333322  222222111111222223343444445555555554444  454421    22


Q ss_pred             EEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecCCCCeEEEEeecC-CCEEEEcc---CCceEEEe
Q 036314          266 FQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKVLCADWWR-GDSVISGG---VDSKLCVS  341 (347)
Q Consensus       266 ~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~l~s~s---~D~~v~vw  341 (347)
                      ..+..+........|+|++..++.....++...+|..+.......+..+........|+| |++||-.+   ....|.++
T Consensus       164 ~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~  243 (269)
T d2hqsa1         164 QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLV  243 (269)
T ss_dssp             EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEE
T ss_pred             eeeecccccccccccccccceeEEEeecCCceeeeEeecccccceEeecCccccceEECCCCCEEEEEEcCCCCcEEEEE
Confidence            344445566777889999987666656666666665543322333344455667788985 77766322   34456665


Q ss_pred             ec
Q 036314          342 SG  343 (347)
Q Consensus       342 ~~  343 (347)
                      +.
T Consensus       244 ~~  245 (269)
T d2hqsa1         244 ST  245 (269)
T ss_dssp             ET
T ss_pred             EC
Confidence            53

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.51  E-value=9.7e-06  Score=70.09  Aligned_cols=166  Identities=8%  Similarity=0.087  Sum_probs=93.7

Q ss_pred             cceEEEEEeCCCCEEEEeeC-CCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEe-CCC
Q 036314          120 ASVHSIAAETSGNMVCSGSW-DCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW-PQQ  197 (347)
Q Consensus       120 ~~V~~v~~s~~~~~l~sgs~-Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~  197 (347)
                      ..+++++|+|||+++++++. ...|.+|+......   ....                ...... ......+.++| |++
T Consensus       145 ~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~---~~~~----------------~~~~~~-~~g~gPr~i~f~pdg  204 (365)
T d1jofa_         145 TGIHGMVFDPTETYLYSADLTANKLWTHRKLASGE---VELV----------------GSVDAP-DPGDHPRWVAMHPTG  204 (365)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSC---EEEE----------------EEEECS-STTCCEEEEEECTTS
T ss_pred             CcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCc---eeec----------------cceeec-CCCCceEEEEECCCC
Confidence            34789999999998877653 44788887543210   0000                000011 11223456666 677


Q ss_pred             CeEE-EEecCCcEEEEECCCCceee--eee------------------eCeeeEEEEeeCCCCcEEEEecCC-----CcE
Q 036314          198 ETIY-SASWDHSVRTWDVEMGKDLS--DIF------------------CGKALNCIDIGGEGSALIAAGGSD-----PIL  251 (347)
Q Consensus       198 ~~l~-s~s~dg~v~vwd~~~~~~~~--~~~------------------~~~~~~~~~~~~~~~~~la~~~~d-----~~i  251 (347)
                      ++++ +.-.+++|.+|++..+....  ...                  .......+.++|++..++++.-.+     ..|
T Consensus       205 ~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i  284 (365)
T d1jofa_         205 NYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYI  284 (365)
T ss_dssp             SEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEE
T ss_pred             ceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEE
Confidence            7764 44567899999986553221  110                  011234577777665555543222     237


Q ss_pred             EEEeCCCCCCCCCe---EEecCCCCCeeEEEeCC-CCCeEEEEEeCCCcEEEEEcCCC
Q 036314          252 RIWDPRKPGTSAPV---FQFSSHNSWISACKWHN-KSWFHLISASYDGKVMLWDLRTA  305 (347)
Q Consensus       252 ~iwd~~~~~~~~~~---~~~~~h~~~v~~v~~s~-~~~~~l~s~s~D~~i~lwd~~~~  305 (347)
                      ..|++.........   ........+-..++++| +|.+++++...+++|.+|+++..
T Consensus       285 ~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~  342 (365)
T d1jofa_         285 AGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             EEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             EEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence            77876643221111   11122344567799998 67766666678899999998653

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.47  E-value=0.00012  Score=61.51  Aligned_cols=222  Identities=9%  Similarity=0.078  Sum_probs=119.5

Q ss_pred             CCeEEEEcCCCeEEEEee-cc----CCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeeeecc
Q 036314           44 DNLGRVWKAGGVCTHILE-GH----CGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGH  118 (347)
Q Consensus        44 d~~i~iw~~~~~~~~~l~-~h----~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h  118 (347)
                      +++|..||..+.....+. ..    .+.-..+.|.++++    .|+.+...+.|...+.+.......      .....+.
T Consensus        45 ~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~----~l~vad~~~~i~~~~~~g~~~~~~------~~~~~g~  114 (314)
T d1pjxa_          45 AGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDAN----QLFVADMRLGLLVVQTDGTFEEIA------KKDSEGR  114 (314)
T ss_dssp             CCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSS----EEEEEETTTEEEEEETTSCEEECC------SBCTTSC
T ss_pred             CCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCC----EEEEEECCCeEEEEeCCCcEEEEE------ecccccc
Confidence            467888887543222221 11    12345788887543    355566666788888765421100      0000011


Q ss_pred             -ccceEEEEEeCCCCEEEEeeCCC-------------cEEEEecCCCCCCCccceeeeccCCCccccccccccccccccC
Q 036314          119 -KASVHSIAAETSGNMVCSGSWDC-------------TISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVG  184 (347)
Q Consensus       119 -~~~V~~v~~s~~~~~l~sgs~Dg-------------~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (347)
                       -...+.+++.++|++.++-....             .=++|.+..                        +++.. .+..
T Consensus       115 ~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~------------------------dg~~~-~~~~  169 (314)
T d1pjxa_         115 RMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTT------------------------DGQMI-QVDT  169 (314)
T ss_dssp             BCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECT------------------------TSCEE-EEEE
T ss_pred             ccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEee------------------------cCcee-EeeC
Confidence             11257789999998877643210             111221110                        01100 0111


Q ss_pred             CccceEEEEe-CCCC----eE-EEEecCCcEEEEECCCCceeee--ee----e--CeeeEEEEeeCCCCcEEEEecCCCc
Q 036314          185 HTQCVSSVVW-PQQE----TI-YSASWDHSVRTWDVEMGKDLSD--IF----C--GKALNCIDIGGEGSALIAAGGSDPI  250 (347)
Q Consensus       185 h~~~v~~~~~-~~~~----~l-~s~s~dg~v~vwd~~~~~~~~~--~~----~--~~~~~~~~~~~~~~~~la~~~~d~~  250 (347)
                      .-..-+.++| ++++    .| ++-+..+.|..||+.....+..  ..    .  ......+++..++ ++.++....+.
T Consensus       170 ~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~G-nlyVa~~~~g~  248 (314)
T d1pjxa_         170 AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDN-NLLVANWGSSH  248 (314)
T ss_dssp             EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTC-CEEEEEETTTE
T ss_pred             CcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCC-cEEEEEcCCCE
Confidence            1112245666 3322    34 4446677888888754332221  11    1  1123456776554 56666666789


Q ss_pred             EEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCC
Q 036314          251 LRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRT  304 (347)
Q Consensus       251 i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~  304 (347)
                      |.+||.+..   .....+..+.....+++|.|++..+.++.+.+++|...++..
T Consensus       249 I~~~dp~~g---~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~  299 (314)
T d1pjxa_         249 IEVFGPDGG---QPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             EEEECTTCB---SCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             EEEEeCCCC---EEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCC
Confidence            999997632   123445555677899999999877788888889888888753

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.46  E-value=0.00012  Score=59.58  Aligned_cols=229  Identities=6%  Similarity=-0.014  Sum_probs=129.3

Q ss_pred             eEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEE
Q 036314           67 VSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLW  146 (347)
Q Consensus        67 V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iw  146 (347)
                      -..|++.+++.   .+++..+..+.+..++......        ....+.+. .....++++++++++++....+.++++
T Consensus        16 P~~vavd~dG~---i~v~~~~~~~~i~~~~~~~~~~--------~~~~~~~~-~~p~gvav~~~g~i~v~d~~~~~i~~~   83 (260)
T d1rwia_          16 PSGVAVDSAGN---VYVTSEGMYGRVVKLATGSTGT--------TVLPFNGL-YQPQGLAVDGAGTVYVTDFNNRVVTLA   83 (260)
T ss_dssp             EEEEEECTTCC---EEEEECSSSCEEEEEC----CE--------EECCCCSC-CSCCCEEECTTCCEEEEETTTEEEEEC
T ss_pred             CCEEEEcCCCC---EEEEEcCCCCEEEEEcCCCceE--------EEeccCCc-cCceEEEEcCCCCEEEeeeeeceeeee
Confidence            36788876432   3455566667777776543211        11111222 224678899999988887777777776


Q ss_pred             ecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEe-CCCCeEEEEecCCcEEEEECCCCceeeee-e
Q 036314          147 RTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSDI-F  224 (347)
Q Consensus       147 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~l~s~s~dg~v~vwd~~~~~~~~~~-~  224 (347)
                      +-.+...                         .....+ -....++++ +++..+++-..+..+..++.......... .
T Consensus        84 ~~~~~~~-------------------------~~~~~~-~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~  137 (260)
T d1rwia_          84 AGSNNQT-------------------------VLPFDG-LNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFT  137 (260)
T ss_dssp             TTCSCCE-------------------------ECCCCS-CCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCC
T ss_pred             eecccee-------------------------eeeeee-eeecccccccccceeEeeccccccccccccccceeeeeeec
Confidence            5332110                         001111 123466776 45555555555556666665443221111 1


Q ss_pred             eCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEe-cCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcC
Q 036314          225 CGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQF-SSHNSWISACKWHNKSWFHLISASYDGKVMLWDLR  303 (347)
Q Consensus       225 ~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~-~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~  303 (347)
                      .-.....+++.+. +.++++...++.|..+|.....    ...+ .........+++.+++. ++++....+.|..++..
T Consensus       138 ~~~~p~~i~~~~~-g~~~v~~~~~~~i~~~d~~~~~----~~~~~~~~~~~p~gi~~d~~g~-l~vsd~~~~~i~~~~~~  211 (260)
T d1rwia_         138 GLNDPDGVAVDNS-GNVYVTDTDNNRVVKLEAESNN----QVVLPFTDITAPWGIAVDEAGT-VYVTEHNTNQVVKLLAG  211 (260)
T ss_dssp             SCCSCCEEEECTT-CCEEEEEGGGTEEEEECTTTCC----EEECCCSSCCSEEEEEECTTCC-EEEEETTTTEEEEECTT
T ss_pred             ccCCcceeeecCC-CCEeeeccccccccccccccce----eeeeeccccCCCccceeeeeee-eeeeecCCCEEEEEeCC
Confidence            1123467788664 4577777778899999876321    2222 23445667899999874 57777778888888876


Q ss_pred             CCccceee-cCCCCeEEEEeec-CCCEEEEccCCceEEE
Q 036314          304 TAWPLSVI-DSHKDKVLCADWW-RGDSVISGGVDSKLCV  340 (347)
Q Consensus       304 ~~~~~~~~-~~h~~~v~~~~~~-~~~~l~s~s~D~~v~v  340 (347)
                      ... ...+ ...-....++++. +|+.+++-..+++|+.
T Consensus       212 ~~~-~~~~~~~~~~~P~~i~~d~~g~l~vad~~~~rI~~  249 (260)
T d1rwia_         212 STT-STVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVK  249 (260)
T ss_dssp             CSC-CEECCCCSCCCEEEEEECTTCCEEEEEGGGTEEEE
T ss_pred             CCe-EEEEccCCCCCeEEEEEeCCCCEEEEECCCCEEEE
Confidence            543 2222 2223456788886 5777777666666653

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.37  E-value=0.0004  Score=57.08  Aligned_cols=238  Identities=10%  Similarity=0.120  Sum_probs=132.1

Q ss_pred             eEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCC-CEEE-EeeCCCcEE
Q 036314           67 VSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSG-NMVC-SGSWDCTIS  144 (347)
Q Consensus        67 V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~-~~l~-sgs~Dg~I~  144 (347)
                      -..|++.+++    ..+++-...+.|++||.+. +++......   ....+....-..+++.++. ..++ ..+.++.|.
T Consensus        25 P~gvavd~dg----~i~VaD~~n~rI~v~d~~G-~~~~~~~~~---~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~   96 (279)
T d1q7fa_          25 PSGVAVNAQN----DIIVADTNNHRIQIFDKEG-RFKFQFGEC---GKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQ   96 (279)
T ss_dssp             EEEEEECTTC----CEEEEEGGGTEEEEECTTS-CEEEEECCB---SSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEE
T ss_pred             ccEEEEcCCC----CEEEEECCCCEEEEEeCCC-CEEEEeccc---CCCcccccccccccccccccccceeccCCccccc
Confidence            4678887643    2456666778899998653 221110000   0000111223445554443 3343 334555676


Q ss_pred             EEecCCCCCCCccceeeeccCCCccccccccccccccc-cCCccceEEEEe-CCCCeEEEEecCCcEEEEECCCCceeee
Q 036314          145 LWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTL-VGHTQCVSSVVW-PQQETIYSASWDHSVRTWDVEMGKDLSD  222 (347)
Q Consensus       145 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~-~~~~~l~s~s~dg~v~vwd~~~~~~~~~  222 (347)
                      +++....                          ....+ .........++. +++..+++....+.+.+++. .++.+..
T Consensus        97 ~~~~~g~--------------------------~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~-~g~~~~~  149 (279)
T d1q7fa_          97 IYNQYGQ--------------------------FVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHK  149 (279)
T ss_dssp             EECTTSC--------------------------EEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEE
T ss_pred             ccccccc--------------------------ceeecCCCcccccceeccccCCcEEEEeeccceeeEecc-CCceeec
Confidence            6654311                          01111 011123345555 45565666566666777774 3444444


Q ss_pred             eeeC---eeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEec--CCCCCeeEEEeCCCCCeEEEEEe-CCCc
Q 036314          223 IFCG---KALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFS--SHNSWISACKWHNKSWFHLISAS-YDGK  296 (347)
Q Consensus       223 ~~~~---~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~--~h~~~v~~v~~s~~~~~~l~s~s-~D~~  296 (347)
                      +...   .....+++.++ +.++++....+.|++||...    ..+.++.  +.......+++.|++. ++++-+ .++.
T Consensus       150 ~g~~~~~~~~~~i~~d~~-g~i~v~d~~~~~V~~~d~~G----~~~~~~g~~g~~~~P~giavD~~G~-i~Vad~~~~~~  223 (279)
T d1q7fa_         150 FGCSKHLEFPNGVVVNDK-QEIFISDNRAHCVKVFNYEG----QYLRQIGGEGITNYPIGVGINSNGE-ILIADNHNNFN  223 (279)
T ss_dssp             EECTTTCSSEEEEEECSS-SEEEEEEGGGTEEEEEETTC----CEEEEESCTTTSCSEEEEEECTTCC-EEEEECSSSCE
T ss_pred             ccccccccccceeeeccc-eeEEeeeccccceeeeecCC----ceeeeecccccccCCcccccccCCe-EEEEECCCCcE
Confidence            4221   23455666544 46777778889999999752    2244442  3455678899999986 455443 4567


Q ss_pred             EEEEEcCCCccceeecC--CCCeEEEEeecCCCEEEEccCCceEEEeecccC
Q 036314          297 VMLWDLRTAWPLSVIDS--HKDKVLCADWWRGDSVISGGVDSKLCVSSGVSI  346 (347)
Q Consensus       297 i~lwd~~~~~~~~~~~~--h~~~v~~~~~~~~~~l~s~s~D~~v~vw~~~~~  346 (347)
                      |.+++.+ |+.+.++..  .....+.++..++.+|+.++.+.+|++|+-.++
T Consensus       224 v~~f~~~-G~~~~~~~~~~~~~~p~~vav~~dG~l~V~~~n~~v~~fr~~~~  274 (279)
T d1q7fa_         224 LTIFTQD-GQLISALESKVKHAQCFDVALMDDGSVVLASKDYRLYIYRYVQL  274 (279)
T ss_dssp             EEEECTT-SCEEEEEEESSCCSCEEEEEEETTTEEEEEETTTEEEEEECSCC
T ss_pred             EEEECCC-CCEEEEEeCCCCCCCEeEEEEeCCCcEEEEeCCCeEEEEEeeee
Confidence            9999864 666666532  224567888865445555567999999987653

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.22  E-value=0.001  Score=55.66  Aligned_cols=113  Identities=11%  Similarity=0.052  Sum_probs=73.2

Q ss_pred             eEEEEeeCCCC----cEEEEecCCCcEEEEeCCCCCCCCCe---EEecCC-CCCeeEEEeCCCCCeEEEEEeCCCcEEEE
Q 036314          229 LNCIDIGGEGS----ALIAAGGSDPILRIWDPRKPGTSAPV---FQFSSH-NSWISACKWHNKSWFHLISASYDGKVMLW  300 (347)
Q Consensus       229 ~~~~~~~~~~~----~~la~~~~d~~i~iwd~~~~~~~~~~---~~~~~h-~~~v~~v~~s~~~~~~l~s~s~D~~i~lw  300 (347)
                      .+.+++.+++.    .++++-+..+.|..||+...+.....   ..+.+. ......+++.++|. +.++....+.|.+|
T Consensus       174 pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~Gn-lyVa~~~~g~I~~~  252 (314)
T d1pjxa_         174 PNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNN-LLVANWGSSHIEVF  252 (314)
T ss_dssp             EEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCC-EEEEEETTTEEEEE
T ss_pred             eeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCc-EEEEEcCCCEEEEE
Confidence            34566665432    35566677889999987643221111   122221 22345688888885 45666677899999


Q ss_pred             EcCCCccceeecCCCCeEEEEeecC-CC-EEEEccCCceEEEee
Q 036314          301 DLRTAWPLSVIDSHKDKVLCADWWR-GD-SVISGGVDSKLCVSS  342 (347)
Q Consensus       301 d~~~~~~~~~~~~h~~~v~~~~~~~-~~-~l~s~s~D~~v~vw~  342 (347)
                      |.+.++.+..+......+.+++|.+ ++ .+++.+.+++|...+
T Consensus       253 dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~  296 (314)
T d1pjxa_         253 GPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFE  296 (314)
T ss_dssp             CTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             eCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEE
Confidence            9988877776666556788999975 44 467878888886654

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.02  E-value=0.0026  Score=53.12  Aligned_cols=222  Identities=12%  Similarity=0.182  Sum_probs=120.5

Q ss_pred             eEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCC--CcEE
Q 036314           67 VSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWD--CTIS  144 (347)
Q Consensus        67 V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~D--g~I~  144 (347)
                      +..++|.+++    ...++-...+.|..|+.++++.         ...+.........+++++||+++++...+  ....
T Consensus        42 lEG~~~D~~G----~Ly~~D~~~g~I~ri~p~g~~~---------~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~  108 (319)
T d2dg1a1          42 LEGLNFDRQG----QLFLLDVFEGNIFKINPETKEI---------KRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGG  108 (319)
T ss_dssp             EEEEEECTTS----CEEEEETTTCEEEEECTTTCCE---------EEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCE
T ss_pred             cEeCEECCCC----CEEEEECCCCEEEEEECCCCeE---------EEEEeCCCCCeeEEEECCCCCEEEEecCCCcccee
Confidence            3467776643    2455666788888888765431         12233345567889999999988765432  3334


Q ss_pred             EEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEe-CCCCeEEEEecC-------CcEEEEECCC
Q 036314          145 LWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW-PQQETIYSASWD-------HSVRTWDVEM  216 (347)
Q Consensus       145 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~l~s~s~d-------g~v~vwd~~~  216 (347)
                      ++.+......   ...                 .... ..-....+.+++ +++...++ ..+       +.+..++.. 
T Consensus       109 i~~~~~~~~~---~~~-----------------~~~~-~~~~~~~nd~~~d~~G~l~vt-d~~~~~~~~~g~v~~~~~d-  165 (319)
T d2dg1a1         109 IFAATENGDN---LQD-----------------IIED-LSTAYCIDDMVFDSKGGFYFT-DFRGYSTNPLGGVYYVSPD-  165 (319)
T ss_dssp             EEEECTTSCS---CEE-----------------EECS-SSSCCCEEEEEECTTSCEEEE-ECCCBTTBCCEEEEEECTT-
T ss_pred             EEEEcCCCce---eee-----------------eccC-CCcccCCcceeEEeccceeec-ccccccccCcceeEEEecc-
Confidence            4433221000   000                 0000 000112445555 45544443 322       124444433 


Q ss_pred             Cceeeeeee-CeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeE-----EecCCCCCeeEEEeCCCCCeEEEE
Q 036314          217 GKDLSDIFC-GKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVF-----QFSSHNSWISACKWHNKSWFHLIS  290 (347)
Q Consensus       217 ~~~~~~~~~-~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~-----~~~~h~~~v~~v~~s~~~~~~l~s  290 (347)
                      +..+..+.. -...+.+++++++..+.++-+..+.|..||+..........     ........-..+++.++|. +.++
T Consensus       166 g~~~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~-l~Va  244 (319)
T d2dg1a1         166 FRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDN-LYVA  244 (319)
T ss_dssp             SCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCC-EEEE
T ss_pred             cceeEEEeeccceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCC-EEEE
Confidence            222332221 12346788887776677777788999999986432211100     0111112245688888885 5666


Q ss_pred             EeCCCcEEEEEcCCCccceeec------CCCCeEEEEeecCC
Q 036314          291 ASYDGKVMLWDLRTAWPLSVID------SHKDKVLCADWWRG  326 (347)
Q Consensus       291 ~s~D~~i~lwd~~~~~~~~~~~------~h~~~v~~~~~~~~  326 (347)
                      ...++.|.++|. .|+.+..+.      ++...+.+++|.++
T Consensus       245 ~~~~g~V~~~~p-~G~~l~~i~~P~~~~~~~~~~~~~~~~~~  285 (319)
T d2dg1a1         245 MYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPG  285 (319)
T ss_dssp             EETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTT
T ss_pred             EcCCCEEEEECC-CCcEEEEEeCCCcCCCcCceeeeEEEeCC
Confidence            677899999997 477666653      44556789999753

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.94  E-value=0.0015  Score=52.82  Aligned_cols=193  Identities=8%  Similarity=-0.004  Sum_probs=107.8

Q ss_pred             cceEEEEEeCCCCEEEE-eeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEe-CCC
Q 036314          120 ASVHSIAAETSGNMVCS-GSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW-PQQ  197 (347)
Q Consensus       120 ~~V~~v~~s~~~~~l~s-gs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~  197 (347)
                      ..-.+++++++|+..++ .+..+.+..++......                        ......+. .....+++ +++
T Consensus        14 ~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~------------------------~~~~~~~~-~~p~gvav~~~g   68 (260)
T d1rwia_          14 LSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGT------------------------TVLPFNGL-YQPQGLAVDGAG   68 (260)
T ss_dssp             CCEEEEEECTTCCEEEEECSSSCEEEEEC----CE------------------------EECCCCSC-CSCCCEEECTTC
T ss_pred             CCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceE------------------------EEeccCCc-cCceEEEEcCCC
Confidence            34578999999996665 45557777665432110                        00001111 11234555 455


Q ss_pred             CeEEEEecCCcEEEEECCCCceeeeeeeCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeE
Q 036314          198 ETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISA  277 (347)
Q Consensus       198 ~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~  277 (347)
                      ..+++....+.+++++......+........+..+++.+++ +++++-..+..+..++.....  ...... ........
T Consensus        69 ~i~v~d~~~~~i~~~~~~~~~~~~~~~~~~~p~~iavd~~g-~i~v~d~~~~~~~~~~~~~~~--~~~~~~-~~~~~p~~  144 (260)
T d1rwia_          69 TVYVTDFNNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQG-AVYVADRGNNRVVKLAAGSKT--QTVLPF-TGLNDPDG  144 (260)
T ss_dssp             CEEEEETTTEEEEECTTCSCCEECCCCSCCSEEEEEECTTC-CEEEEEGGGTEEEEECTTCSS--CEECCC-CSCCSCCE
T ss_pred             CEEEeeeeeceeeeeeeccceeeeeeeeeeecccccccccc-eeEeeccccccccccccccce--eeeeee-cccCCcce
Confidence            55555555555666654444433322222345678886644 566666666778788764321  111111 22334578


Q ss_pred             EEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecCCCCeEEEEeec-CCCEEEEccCCceEEEee
Q 036314          278 CKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKVLCADWW-RGDSVISGGVDSKLCVSS  342 (347)
Q Consensus       278 v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h~~~v~~~~~~-~~~~l~s~s~D~~v~vw~  342 (347)
                      ++++|++. ++++...++.|..+|.+...........-....++++. +|+.+++....+.|..+.
T Consensus       145 i~~~~~g~-~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~  209 (260)
T d1rwia_         145 VAVDNSGN-VYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLL  209 (260)
T ss_dssp             EEECTTCC-EEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEEC
T ss_pred             eeecCCCC-EeeeccccccccccccccceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEe
Confidence            89999875 57777788899999987543222222344556778884 577777777777776554

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.40  E-value=0.024  Score=46.45  Aligned_cols=208  Identities=9%  Similarity=-0.013  Sum_probs=117.0

Q ss_pred             cCCCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCC
Q 036314           87 SKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGN  166 (347)
Q Consensus        87 s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~  166 (347)
                      -..++|..||..+++.          ..+ .....+.++++.++|.++++ +.+ .+.++|..++...            
T Consensus        37 i~~~~I~r~d~~~g~~----------~~~-~~~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~------------   91 (295)
T d2ghsa1          37 ILERELHELHLASGRK----------TVH-ALPFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLT------------   91 (295)
T ss_dssp             GGGTEEEEEETTTTEE----------EEE-ECSSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEE------------
T ss_pred             CCCCEEEEEECCCCeE----------EEE-ECCCCcEEEEEecCCCEEEE-EeC-ccEEeecccceee------------
Confidence            3446677777665431          111 12345778898889887775 444 5778887654210            


Q ss_pred             CccccccccccccccccC--CccceEEEEe-CCCCeEEEEecC----CcEEEEECCCCceeeeeeeCeeeEEEEeeCCCC
Q 036314          167 NQVEEPQLEGEAISTLVG--HTQCVSSVVW-PQQETIYSASWD----HSVRTWDVEMGKDLSDIFCGKALNCIDIGGEGS  239 (347)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~--h~~~v~~~~~-~~~~~l~s~s~d----g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (347)
                                 .+.....  .....+.+.. +++...++...+    +.-.+|.+..++.......-...+.+.+++++.
T Consensus        92 -----------~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~~~~Ng~~~s~d~~  160 (295)
T d2ghsa1          92 -----------LHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADISIPNSICFSPDGT  160 (295)
T ss_dssp             -----------EEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEESSEEEEEECTTSC
T ss_pred             -----------EEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeeccCCcceeeecCCCc
Confidence                       0000000  1123455555 455544433221    234566665554332222222346778877777


Q ss_pred             cEEEEecCCCcEEEEeCCCCCCC--C-C--eEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecCC
Q 036314          240 ALIAAGGSDPILRIWDPRKPGTS--A-P--VFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSH  314 (347)
Q Consensus       240 ~~la~~~~d~~i~iwd~~~~~~~--~-~--~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h  314 (347)
                      .++.+.+..+.|..|++......  . .  ...+.+.......+++..+|. +.++.-..+.|..||.+ ++.+..+.--
T Consensus       161 ~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~Gn-lWva~~~~g~V~~~dp~-G~~~~~i~lP  238 (295)
T d2ghsa1         161 TGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGH-IWNARWGEGAVDRYDTD-GNHIARYEVP  238 (295)
T ss_dssp             EEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSC-EEEEEETTTEEEEECTT-CCEEEEEECS
T ss_pred             eEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCC-EEeeeeCCCceEEecCC-CcEeeEecCC
Confidence            77788888899999987532111  1 1  112233444567788888884 34444456789999974 7777777654


Q ss_pred             CCeEEEEeec--CCC-EEEEc
Q 036314          315 KDKVLCADWW--RGD-SVISG  332 (347)
Q Consensus       315 ~~~v~~~~~~--~~~-~l~s~  332 (347)
                      ...+++++|-  +.+ .++|.
T Consensus       239 ~~~~T~~~FGG~d~~~LyvTt  259 (295)
T d2ghsa1         239 GKQTTCPAFIGPDASRLLVTS  259 (295)
T ss_dssp             CSBEEEEEEESTTSCEEEEEE
T ss_pred             CCceEEEEEeCCCCCEEEEEE
Confidence            5678999994  334 45553

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.33  E-value=0.031  Score=46.27  Aligned_cols=193  Identities=6%  Similarity=-0.042  Sum_probs=105.6

Q ss_pred             cceEEEEEeCCCCEEEEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEeC-CCC
Q 036314          120 ASVHSIAAETSGNMVCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVWP-QQE  198 (347)
Q Consensus       120 ~~V~~v~~s~~~~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~  198 (347)
                      ..+-.++|.++|++.++-...+.|..|+......                         .............+++. ++.
T Consensus        40 ~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~-------------------------~~~~~~~~~~p~gla~~~dG~   94 (319)
T d2dg1a1          40 LQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEI-------------------------KRPFVSHKANPAAIKIHKDGR   94 (319)
T ss_dssp             CCEEEEEECTTSCEEEEETTTCEEEEECTTTCCE-------------------------EEEEECSSSSEEEEEECTTSC
T ss_pred             cCcEeCEECCCCCEEEEECCCCEEEEEECCCCeE-------------------------EEEEeCCCCCeeEEEECCCCC
Confidence            3346789999999888888889998887653210                         01111122234667774 555


Q ss_pred             eEEEEecC----CcEEEEECCCCceeeeeee---CeeeEEEEeeCCCCcEEEEecC------CCcEEEEeCCCCCCCCCe
Q 036314          199 TIYSASWD----HSVRTWDVEMGKDLSDIFC---GKALNCIDIGGEGSALIAAGGS------DPILRIWDPRKPGTSAPV  265 (347)
Q Consensus       199 ~l~s~s~d----g~v~vwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~la~~~~------d~~i~iwd~~~~~~~~~~  265 (347)
                      .+++...+    +.+...+............   ....+.+.+.+++ ++.++...      -+.+..++...  .  .+
T Consensus        95 l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G-~l~vtd~~~~~~~~~g~v~~~~~dg--~--~~  169 (319)
T d2dg1a1          95 LFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKG-GFYFTDFRGYSTNPLGGVYYVSPDF--R--TV  169 (319)
T ss_dssp             EEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTS-CEEEEECCCBTTBCCEEEEEECTTS--C--CE
T ss_pred             EEEEecCCCccceeEEEEcCCCceeeeeccCCCcccCCcceeEEecc-ceeecccccccccCcceeEEEeccc--c--ee
Confidence            55543322    2344444444332222211   1235566776654 45554322      12355555432  1  12


Q ss_pred             EEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCC-ccceee-------cCCCCeEEEEee-cCCCEEEEccCCc
Q 036314          266 FQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTA-WPLSVI-------DSHKDKVLCADW-WRGDSVISGGVDS  336 (347)
Q Consensus       266 ~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~-~~~~~~-------~~h~~~v~~~~~-~~~~~l~s~s~D~  336 (347)
                      ..+...-..-+.++|+|++..+.++-+..++|..||++.. ......       .......-.+++ .+|+..++....+
T Consensus       170 ~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g  249 (319)
T d2dg1a1         170 TPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQG  249 (319)
T ss_dssp             EEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTT
T ss_pred             EEEeeccceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCC
Confidence            2222233345679999999876677788899999998643 211111       111123456666 4677767766778


Q ss_pred             eEEEee
Q 036314          337 KLCVSS  342 (347)
Q Consensus       337 ~v~vw~  342 (347)
                      .|.+++
T Consensus       250 ~V~~~~  255 (319)
T d2dg1a1         250 RVLVFN  255 (319)
T ss_dssp             EEEEEC
T ss_pred             EEEEEC
Confidence            887775

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.20  E-value=0.0088  Score=52.65  Aligned_cols=57  Identities=12%  Similarity=0.222  Sum_probs=35.7

Q ss_pred             ccCCCcEEEEeccccccccCccccceeeeeec---cccceEEEEEeCCCCEEEEe---------eCCCcEEEEecCCC
Q 036314           86 ASKDQTLRLWKFDAEELVNHPKKIRSFKILRG---HKASVHSIAAETSGNMVCSG---------SWDCTISLWRTNDS  151 (347)
Q Consensus        86 ~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~---h~~~V~~v~~s~~~~~l~sg---------s~Dg~I~iwd~~~~  151 (347)
                      -..||.|.+||+.+++..       .  .+..   ..-.+....||||++.++-.         +..+.+.++|+.++
T Consensus        33 ~~~~g~i~~~~~~~~~~~-------~--l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~  101 (465)
T d1xfda1          33 REQKGTVRLWNVETNTST-------V--LIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHG  101 (465)
T ss_dssp             CCSSSCEEEBCGGGCCCE-------E--EECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSC
T ss_pred             EeCCCcEEEEECCCCCEE-------E--EEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCC
Confidence            456778999998765421       1  1111   22345667899999987654         34567778887654

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=96.91  E-value=0.066  Score=42.49  Aligned_cols=95  Identities=14%  Similarity=0.107  Sum_probs=52.7

Q ss_pred             CCEEEEEecCCeEEEEcCCCeEEEEeeccCCceEEEEEeecCCCceEEEE-Ec---cCCCc--EEEEeccccccccCccc
Q 036314           35 PGFILTGCYDNLGRVWKAGGVCTHILEGHCGAVSSVNIIKSDGLKYVTVA-TA---SKDQT--LRLWKFDAEELVNHPKK  108 (347)
Q Consensus        35 ~~~l~sg~~d~~i~iw~~~~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~-s~---s~Dg~--v~~wd~~~~~~~~~~~~  108 (347)
                      |+.+|-.+ ++.+.+.|+.+...+.|..+.+.+....|+|++.    .|| +.   +.+..  |.+++..+++...... 
T Consensus        12 G~~v~f~~-~~dl~~~d~~~g~~~~Lt~~~~~~~~p~~SPDG~----~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~-   85 (281)
T d1k32a2          12 GDRIIFVC-CDDLWEHDLKSGSTRKIVSNLGVINNARFFPDGR----KIAIRVMRGSSLNTADLYFYNGENGEIKRITY-   85 (281)
T ss_dssp             TTEEEEEE-TTEEEEEETTTCCEEEEECSSSEEEEEEECTTSS----EEEEEEEESTTCCEEEEEEEETTTTEEEECCC-
T ss_pred             CCEEEEEe-CCcEEEEECCCCCEEEEecCCCcccCEEECCCCC----EEEEEEeeCCCCCceEEEEEEecCCceEEeee-
Confidence            55666553 4556666887655667888888889999999653    344 32   22222  4555555443211000 


Q ss_pred             cceeeeeeccccceEEEEEeCCCCEEEEe
Q 036314          109 IRSFKILRGHKASVHSIAAETSGNMVCSG  137 (347)
Q Consensus       109 ~~~~~~~~~h~~~V~~v~~s~~~~~l~sg  137 (347)
                        ...............+|+|+|+.++..
T Consensus        86 --~~~~~~~~~~~~~~~~~spdg~~l~~~  112 (281)
T d1k32a2          86 --FSGKSTGRRMFTDVAGFDPDGNLIIST  112 (281)
T ss_dssp             --CCEEEETTEECSEEEEECTTCCEEEEE
T ss_pred             --cCCCccCccccccccccCCCCCEEEEE
Confidence              000011122334667899999888753

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.03  E-value=0.011  Score=52.01  Aligned_cols=136  Identities=13%  Similarity=0.131  Sum_probs=77.0

Q ss_pred             CCCeEEEEecCCcEEEEECCCCceeeeeee----CeeeEEEEeeCCCCcEEEEe--------cCCCcEEEEeCCCCCCCC
Q 036314          196 QQETIYSASWDHSVRTWDVEMGKDLSDIFC----GKALNCIDIGGEGSALIAAG--------GSDPILRIWDPRKPGTSA  263 (347)
Q Consensus       196 ~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~----~~~~~~~~~~~~~~~~la~~--------~~d~~i~iwd~~~~~~~~  263 (347)
                      ++++++ -..+|.|.+||+.+++....+..    ...+....++|++..+++..        +..+.+.++|+.... ..
T Consensus        27 ~~~~~~-~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~-~~  104 (465)
T d1xfda1          27 DTEFIY-REQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGD-PQ  104 (465)
T ss_dssp             SSCBCC-CCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCC-CE
T ss_pred             CCcEEE-EeCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCc-ee
Confidence            444443 35678899999988764322211    11344566777665444432        335678899987532 22


Q ss_pred             CeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeec-CCCCeE-----------------EEEeecC
Q 036314          264 PVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVID-SHKDKV-----------------LCADWWR  325 (347)
Q Consensus       264 ~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~-~h~~~v-----------------~~~~~~~  325 (347)
                      ++.........+....|||||.. ||=.. ++.|.+.+...+...+... +-.+.|                 .++-|||
T Consensus       105 ~l~~~~~~~~~l~~~~wSPDG~~-iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSP  182 (465)
T d1xfda1         105 SLDPPEVSNAKLQYAGWGPKGQQ-LIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSP  182 (465)
T ss_dssp             ECCCTTCCSCCCSBCCBCSSTTC-EEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECT
T ss_pred             eccCccCCccccceeeeccCCce-EEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECC
Confidence            22222223345666889999986 54433 5678888877665544322 222222                 3455775


Q ss_pred             -CCEEEEccCC
Q 036314          326 -GDSVISGGVD  335 (347)
Q Consensus       326 -~~~l~s~s~D  335 (347)
                       |++||-...|
T Consensus       183 Dgk~iaf~~~D  193 (465)
T d1xfda1         183 DGTRLAYAAIN  193 (465)
T ss_dssp             TSSEEEEEEEE
T ss_pred             CCCeEEEEEec
Confidence             7788876543

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=95.95  E-value=0.3  Score=39.42  Aligned_cols=190  Identities=13%  Similarity=0.047  Sum_probs=98.3

Q ss_pred             CCceeeccCCCCCEEEEEecCCeEEEEcCC-CeEEEEee--cc--CCceEEEEEeecCCCceEEEEEccC----CCcEEE
Q 036314           24 DDWVSAVDGSNPGFILTGCYDNLGRVWKAG-GVCTHILE--GH--CGAVSSVNIIKSDGLKYVTVATASK----DQTLRL   94 (347)
Q Consensus        24 ~~~v~~~~~~~~~~l~sg~~d~~i~iw~~~-~~~~~~l~--~h--~~~V~~v~~~~~~~~~~~~l~s~s~----Dg~v~~   94 (347)
                      ...+.++++.+++.|+.++.+| +..+|.. ++......  ..  ...++.+.+.+++.    +.++...    .+.-.+
T Consensus        58 ~~~~~~i~~~~dg~l~va~~~g-l~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~----iw~~~~~~~~~~~~g~l  132 (295)
T d2ghsa1          58 PFMGSALAKISDSKQLIASDDG-LFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGA----LWIGTMGRKAETGAGSI  132 (295)
T ss_dssp             SSCEEEEEEEETTEEEEEETTE-EEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSC----EEEEEEETTCCTTCEEE
T ss_pred             CCCcEEEEEecCCCEEEEEeCc-cEEeecccceeeEEeeeecCCCcccceeeEECCCCC----EEEEeccccccccceeE
Confidence            3456677765444344445555 6677765 44332221  11  12466777766442    2232211    223455


Q ss_pred             EeccccccccCccccceeeeeeccccceEEEEEeCCCCE-EEEeeCCCcEEEEecCCCCCCCccceeeeccCCCcccccc
Q 036314           95 WKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNM-VCSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQ  173 (347)
Q Consensus        95 wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~-l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (347)
                      |.+..++.         ...+.+ -..-+.++++++++. +++-+..+.|..+++..........               
T Consensus       133 ~~~~~g~~---------~~~~~~-~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~---------------  187 (295)
T d2ghsa1         133 YHVAKGKV---------TKLFAD-ISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGK---------------  187 (295)
T ss_dssp             EEEETTEE---------EEEEEE-ESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSC---------------
T ss_pred             eeecCCcE---------EEEeec-cCCcceeeecCCCceEEEeecccceeeEeeecccccccccc---------------
Confidence            65544431         111222 223467899999975 4566778889888874321100000               


Q ss_pred             ccccccccccCCccceEEEEeC-CCCeEEEEecCCcEEEEECCCCceeeeeeeC-eeeEEEEeeCCC-CcEEEEec
Q 036314          174 LEGEAISTLVGHTQCVSSVVWP-QQETIYSASWDHSVRTWDVEMGKDLSDIFCG-KALNCIDIGGEG-SALIAAGG  246 (347)
Q Consensus       174 ~~~~~~~~~~~h~~~v~~~~~~-~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~la~~~  246 (347)
                        ......+.+.......+++. ++...++.-..+.|..||. .++.+..+... ..+++++|..++ ..++++..
T Consensus       188 --~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~lP~~~~T~~~FGG~d~~~LyvTta  260 (295)
T d2ghsa1         188 --AEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVTSA  260 (295)
T ss_dssp             --CEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEEEB
T ss_pred             --eEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecC-CCcEeeEecCCCCceEEEEEeCCCCCEEEEEEC
Confidence              00000111222334556664 4555555455677999994 67777777654 457888897655 34555533

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=94.90  E-value=0.93  Score=38.40  Aligned_cols=29  Identities=10%  Similarity=0.201  Sum_probs=25.8

Q ss_pred             eEEEeCCCCCeEEEEEeCCCcEEEEEcCC
Q 036314          276 SACKWHNKSWFHLISASYDGKVMLWDLRT  304 (347)
Q Consensus       276 ~~v~~s~~~~~~l~s~s~D~~i~lwd~~~  304 (347)
                      ..+.++|||.+.++++..+.++-|+|+++
T Consensus       278 HGV~vSPDGKyi~VaGKLs~tVSViD~~K  306 (459)
T d1fwxa2         278 HGCNMAPDKKHLCVAGKLSPTVTVLDVTR  306 (459)
T ss_dssp             CCEEECTTSSEEEEECTTSSBEEEEEGGG
T ss_pred             CceEECCCCCEEEEeCCcCCcEEEEEehh
Confidence            45789999999888888999999999975

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=93.70  E-value=1.1  Score=34.67  Aligned_cols=38  Identities=5%  Similarity=0.043  Sum_probs=26.9

Q ss_pred             CCcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEEEE
Q 036314           89 DQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCS  136 (347)
Q Consensus        89 Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~s  136 (347)
                      ++.|.+.|+.+++.          ..|..+...+...+|||||+.||-
T Consensus        20 ~~dl~~~d~~~g~~----------~~Lt~~~~~~~~p~~SPDG~~iaf   57 (281)
T d1k32a2          20 CDDLWEHDLKSGST----------RKIVSNLGVINNARFFPDGRKIAI   57 (281)
T ss_dssp             TTEEEEEETTTCCE----------EEEECSSSEEEEEEECTTSSEEEE
T ss_pred             CCcEEEEECCCCCE----------EEEecCCCcccCEEECCCCCEEEE
Confidence            34577778776542          235566777888999999998873

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=92.78  E-value=2.1  Score=35.11  Aligned_cols=108  Identities=13%  Similarity=0.187  Sum_probs=60.3

Q ss_pred             CCCCCEEEEEecCC-----------eEEEEcCC-CeEEE--Ee-eccCCceEEEEEeecCCCceEEEEEccCC-CcEEEE
Q 036314           32 GSNPGFILTGCYDN-----------LGRVWKAG-GVCTH--IL-EGHCGAVSSVNIIKSDGLKYVTVATASKD-QTLRLW   95 (347)
Q Consensus        32 ~~~~~~l~sg~~d~-----------~i~iw~~~-~~~~~--~l-~~h~~~V~~v~~~~~~~~~~~~l~s~s~D-g~v~~w   95 (347)
                      ..++++++.||.+.           .+.+||+. +....  .+ ..|...-.+..+.++    +..++.|+.+ .++.+|
T Consensus        28 ~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~----g~i~v~Gg~~~~~~~~y  103 (387)
T d1k3ia3          28 PTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGN----GQIVVTGGNDAKKTSLY  103 (387)
T ss_dssp             TTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTT----SCEEEECSSSTTCEEEE
T ss_pred             eeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecC----CcEEEeecCCCcceeEe
Confidence            34677888888642           36789974 33221  11 223222234455553    3456777655 589999


Q ss_pred             eccccccccCccccceeeeeeccccceEEEEEeCCCCEEEEeeCC------CcEEEEecCCC
Q 036314           96 KFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVCSGSWD------CTISLWRTNDS  151 (347)
Q Consensus        96 d~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~sgs~D------g~I~iwd~~~~  151 (347)
                      |..+.+-..       ...+.. ...-.+++..+||++++.|+.+      ..+.+||..+.
T Consensus       104 d~~~~~w~~-------~~~~~~-~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~  157 (387)
T d1k3ia3         104 DSSSDSWIP-------GPDMQV-ARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSK  157 (387)
T ss_dssp             EGGGTEEEE-------CCCCSS-CCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred             cCccCcccc-------cccccc-cccccceeeecCCceeeeccccccccccceeeeecCCCC
Confidence            987654221       111111 1112345667889988888753      35888887654

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.49  E-value=1.9  Score=33.82  Aligned_cols=215  Identities=6%  Similarity=-0.047  Sum_probs=115.1

Q ss_pred             CcEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEEE-EeeCCCcEEEEecCCCCCCCccceeeeccCCCc
Q 036314           90 QTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVC-SGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQ  168 (347)
Q Consensus        90 g~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~-sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~  168 (347)
                      +.|+--+++..+...    ......+..+...+..++|+...+.++ +-..++.|+..++.....               
T Consensus        10 ~~I~~~~ld~~~~~~----~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~---------------   70 (263)
T d1npea_          10 GKIERLPLERNTMKK----TEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP---------------   70 (263)
T ss_dssp             EEEEEEEESSSCBCG----GGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC---------------
T ss_pred             CeEEEEECCCccccc----cccccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCc---------------
Confidence            367666665433211    111222334455678899988776555 445667787777653211               


Q ss_pred             cccccccccccccccCCccceEEEEeC-CCCeEE-EEecCCcEEEEECCCCceeeeeee--CeeeEEEEeeCCCCcEEEE
Q 036314          169 VEEPQLEGEAISTLVGHTQCVSSVVWP-QQETIY-SASWDHSVRTWDVEMGKDLSDIFC--GKALNCIDIGGEGSALIAA  244 (347)
Q Consensus       169 ~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~l~-s~s~dg~v~vwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~la~  244 (347)
                                ...+........++++. .++.|+ +-...+.|.+.++..... ..+..  ...+..+++.|..+.++.+
T Consensus        71 ----------~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~-~~l~~~~l~~p~~l~vdp~~g~ly~t  139 (263)
T d1npea_          71 ----------TTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR-RVLFDTGLVNPRGIVTDPVRGNLYWT  139 (263)
T ss_dssp             ----------EEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSSCSSEEEEEEETTTTEEEEE
T ss_pred             ----------EEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCceE-EEEecccccCCcEEEEecccCcEEEe
Confidence                      00011111235566652 345554 445567898988765432 22322  1346778888877766655


Q ss_pred             ecCCCc--EEEEeCCCCCCCCCeEEecCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecCCCCeEEEEe
Q 036314          245 GGSDPI--LRIWDPRKPGTSAPVFQFSSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKVLCAD  322 (347)
Q Consensus       245 ~~~d~~--i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h~~~v~~~~  322 (347)
                      -...+.  |.--++...  . ........-.....+++.+.+..+..+-...++|...|++.......+.+-. ...+++
T Consensus       140 ~~~~~~~~I~r~~~dG~--~-~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~~-~P~~la  215 (263)
T d1npea_         140 DWNRDNPKIETSHMDGT--N-RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQ-YPFAVT  215 (263)
T ss_dssp             ECCSSSCEEEEEETTSC--C-CEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCC-SEEEEE
T ss_pred             ecCCCCcEEEEecCCCC--C-ceeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECCCC-CcEEEE
Confidence            433333  444455422  1 1222223345667899988777655665677899999997644333334322 345676


Q ss_pred             ecCCCEEEEccCCceE
Q 036314          323 WWRGDSVISGGVDSKL  338 (347)
Q Consensus       323 ~~~~~~l~s~s~D~~v  338 (347)
                      ...+....+-...++|
T Consensus       216 v~~~~lYwtd~~~~~I  231 (263)
T d1npea_         216 SYGKNLYYTDWKTNSV  231 (263)
T ss_dssp             EETTEEEEEETTTTEE
T ss_pred             EECCEEEEEECCCCEE
Confidence            6545444554344444

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.98  E-value=2.4  Score=33.93  Aligned_cols=115  Identities=17%  Similarity=0.225  Sum_probs=75.2

Q ss_pred             CCCCeEEEEecCCcEEEEECCCCceeeeeeeCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCC-
Q 036314          195 PQQETIYSASWDHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNS-  273 (347)
Q Consensus       195 ~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~-  273 (347)
                      |..+.|+--+ ..+++++|+++.+.++.....+++.--.|-.+  ..|+.-+ +..|+=|+++...  .|.+.+..|.+ 
T Consensus        72 P~~~IiALra-g~~LQiFnletK~klks~~~~e~VvfWkWis~--~~L~lVT-~taVYHW~~~g~s--~P~k~fdR~~~L  145 (327)
T d1utca2          72 PASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISL--NTVALVT-DNAVYHWSMEGES--QPVKMFDRHSSL  145 (327)
T ss_dssp             SSSSEEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEESSS--SEEEEEC-SSEEEEEESSSSC--CCEEEEECCGGG
T ss_pred             CCCcEEEEec-CCeEEEEehhHhhhhceEEcCCCcEEEEecCC--CEEEEEc-CCceEEEcccCCC--Cchhhhhhcccc
Confidence            4444444433 67899999999988888776666544444333  3444433 5679999996433  45666766764 


Q ss_pred             ---CeeEEEeCCCCCeEEEEEe--C----CCcEEEEEcCCCccceeecCCCC
Q 036314          274 ---WISACKWHNKSWFHLISAS--Y----DGKVMLWDLRTAWPLSVIDSHKD  316 (347)
Q Consensus       274 ---~v~~v~~s~~~~~~l~s~s--~----D~~i~lwd~~~~~~~~~~~~h~~  316 (347)
                         .|-.-..+++..+++++|=  .    .|.+.||..+.+ .-+.++||.+
T Consensus       146 ~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~-~sQ~ieGhaa  196 (327)
T d1utca2         146 AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAA  196 (327)
T ss_dssp             TTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEECCSEE
T ss_pred             cCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccC-cCccccceee
Confidence               3666677888877766652  2    367899999864 3455677753

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.47  E-value=3.1  Score=32.48  Aligned_cols=236  Identities=8%  Similarity=-0.014  Sum_probs=121.2

Q ss_pred             eEEEEcCCCeEEEEeeccCCceEEEEEeecCCCceEEEEEccCCCcEEEEeccccccccCccccceeeeeeccccceEEE
Q 036314           46 LGRVWKAGGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATASKDQTLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSI  125 (347)
Q Consensus        46 ~i~iw~~~~~~~~~l~~h~~~V~~v~~~~~~~~~~~~l~s~s~Dg~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v  125 (347)
                      .||-.++.+.....+......+.+++|.+..+   ....+-..++.|+.-+++......     .....+......+..+
T Consensus        11 ~I~~~~l~~~~~~~~~~~~~~~~~id~d~~~~---~lYw~D~~~~~I~~~~l~~~~~~~-----~~~~~~~~~~~~p~gl   82 (266)
T d1ijqa1          11 EVRKMTLDRSEYTSLIPNLRNVVALDTEVASN---RIYWSDLSQRMICSTQLDRAHGVS-----SYDTVISRDIQAPDGL   82 (266)
T ss_dssp             SEEEEETTSCCCEEEECSCSSEEEEEEETTTT---EEEEEETTTTEEEEEEC-------------CEEEECSSCSCCCEE
T ss_pred             eEEEEECCCCcceeeeCCCCceEEEEEEeCCC---EEEEEECCCCEEEEEEecCCCCCc-----ceEEEEeCCCCCcceE
Confidence            47767776544344444556678888876443   234455566677766665321100     0111122223446678


Q ss_pred             EEeCCCCEE-EEeeCCCcEEEEecCCCCCCCccceeeeccCCCccccccccccccccccCCccceEEEEe-CCCCeEEEE
Q 036314          126 AAETSGNMV-CSGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQVEEPQLEGEAISTLVGHTQCVSSVVW-PQQETIYSA  203 (347)
Q Consensus       126 ~~s~~~~~l-~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~l~s~  203 (347)
                      ++.+.+..| ++-...+.|.+.++......                         ..+.........++. |....|+-.
T Consensus        83 AvD~~~~~lY~~d~~~~~I~v~~~~g~~~~-------------------------~~~~~~~~~P~~l~vd~~~g~ly~~  137 (266)
T d1ijqa1          83 AVDWIHSNIYWTDSVLGTVSVADTKGVKRK-------------------------TLFRENGSKPRAIVVDPVHGFMYWT  137 (266)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEETTSSSEE-------------------------EEEECTTCCEEEEEEETTTTEEEEE
T ss_pred             EEeeccceEEEEecCCCEEEeEecCCceEE-------------------------EEEcCCCCCcceEEEEcccCeEEEe
Confidence            888766544 45566678888887542110                         001111122344554 444444433


Q ss_pred             ecC--CcEEEEECCCCceeeeeeeC--eeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCCCCCeeEEE
Q 036314          204 SWD--HSVRTWDVEMGKDLSDIFCG--KALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSHNSWISACK  279 (347)
Q Consensus       204 s~d--g~v~vwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~  279 (347)
                      ...  +.|...++.. .....+...  .....+++.+.+..+..+-...+.|...|+..... ..+............++
T Consensus       138 ~~~~~~~I~r~~~dG-s~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~-~~~~~~~~~~~~p~~la  215 (266)
T d1ijqa1         138 DWGTPAKIKKGGLNG-VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLA  215 (266)
T ss_dssp             ECSSSCEEEEEETTS-CCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECTTTTSSEEEEE
T ss_pred             ccCCCcceeEeccCC-CceecccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCE-EEEEeCCCcccccEEEE
Confidence            322  3344444432 222222211  23467778776666777767788999998864221 11222222223345666


Q ss_pred             eCCCCCeEEEEEeCCCcEEEEEcCCCccceeecCCCCeE
Q 036314          280 WHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDSHKDKV  318 (347)
Q Consensus       280 ~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~h~~~v  318 (347)
                      +..  .++..+-..++.|...+..++.....+......+
T Consensus       216 v~~--~~ly~td~~~~~I~~~~~~~g~~~~~~~~~~~~p  252 (266)
T d1ijqa1         216 VFE--DKVFWTDIINEAIFSANRLTGSDVNLLAENLLSP  252 (266)
T ss_dssp             EET--TEEEEEETTTTEEEEEETTTCCCCEEEECSCSCC
T ss_pred             EEC--CEEEEEECCCCeEEEEECCCCcceEEEEcCCCCc
Confidence            653  3556666677888888887776666554433333

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=89.31  E-value=2.4  Score=34.76  Aligned_cols=90  Identities=16%  Similarity=0.137  Sum_probs=48.3

Q ss_pred             EEEEeCCCCCCCCCeEE-ecCCCCCeeEEEeCCCCCeEEEEEeCC-CcEEEEEcCCCccc--eeecCCCCeEEEEeecCC
Q 036314          251 LRIWDPRKPGTSAPVFQ-FSSHNSWISACKWHNKSWFHLISASYD-GKVMLWDLRTAWPL--SVIDSHKDKVLCADWWRG  326 (347)
Q Consensus       251 i~iwd~~~~~~~~~~~~-~~~h~~~v~~v~~s~~~~~~l~s~s~D-~~i~lwd~~~~~~~--~~~~~h~~~v~~~~~~~~  326 (347)
                      +.+||+.... ...... ...|.......++.+++. +++.|+.+ ..+.+||..+..-.  ..+......-..+...+|
T Consensus        54 ~~~yd~~t~~-w~~~~~~~~~~~~~~~~~~~~~~g~-i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG  131 (387)
T d1k3ia3          54 TSSWDPSTGI-VSDRTVTVTKHDMFCPGISMDGNGQ-IVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDG  131 (387)
T ss_dssp             EEEECTTTCC-BCCCEEEECSCCCSSCEEEECTTSC-EEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTS
T ss_pred             EEEEECCCCc-EeecCCCCCCcccceeEEEEecCCc-EEEeecCCCcceeEecCccCcccccccccccccccceeeecCC
Confidence            6789987532 222212 233444445567788885 46666654 68999999875321  111111112233344567


Q ss_pred             CEEEEccCC------ceEEEee
Q 036314          327 DSVISGGVD------SKLCVSS  342 (347)
Q Consensus       327 ~~l~s~s~D------~~v~vw~  342 (347)
                      +.++.|+.+      ..+.+|+
T Consensus       132 ~v~v~GG~~~~~~~~~~v~~yd  153 (387)
T d1k3ia3         132 RVFTIGGSWSGGVFEKNGEVYS  153 (387)
T ss_dssp             CEEEECCCCCSSSCCCCEEEEE
T ss_pred             ceeeeccccccccccceeeeec
Confidence            777777643      2455555

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.87  E-value=7.1  Score=30.24  Aligned_cols=215  Identities=10%  Similarity=0.043  Sum_probs=115.4

Q ss_pred             cEEEEeccccccccCccccceeeeeeccccceEEEEEeCCCCEEE-EeeCCCcEEEEecCCCCCCCccceeeeccCCCcc
Q 036314           91 TLRLWKFDAEELVNHPKKIRSFKILRGHKASVHSIAAETSGNMVC-SGSWDCTISLWRTNDSDAAGNQVSIKKRKGNNQV  169 (347)
Q Consensus        91 ~v~~wd~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~~~~~l~-sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~  169 (347)
                      .|+..++++.+.          ..+......+.+++|+...+.++ +-..++.|+.-++........             
T Consensus        11 ~I~~~~l~~~~~----------~~~~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~-------------   67 (266)
T d1ijqa1          11 EVRKMTLDRSEY----------TSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSS-------------   67 (266)
T ss_dssp             SEEEEETTSCCC----------EEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC---------------------
T ss_pred             eEEEEECCCCcc----------eeeeCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcc-------------
Confidence            588888875431          12223445677899998776655 445566676655542110000             


Q ss_pred             ccccccccccccccCCccceEEEEe--CCCCeEEEEecCCcEEEEECCCCceeeeeee-CeeeEEEEeeCCCCcEEEEe-
Q 036314          170 EEPQLEGEAISTLVGHTQCVSSVVW--PQQETIYSASWDHSVRTWDVEMGKDLSDIFC-GKALNCIDIGGEGSALIAAG-  245 (347)
Q Consensus       170 ~~~~~~~~~~~~~~~h~~~v~~~~~--~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~la~~-  245 (347)
                              ....+......+.++++  ..+....+-...+.|.+.++........+.. ......+++++..+.++.+. 
T Consensus        68 --------~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~  139 (266)
T d1ijqa1          68 --------YDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDW  139 (266)
T ss_dssp             --------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEEC
T ss_pred             --------eEEEEeCCCCCcceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEecc
Confidence                    00001111122344554  2333344445667899999865543332322 23467788887777666554 


Q ss_pred             cCCCcEEEEeCCCCCCCCCeEEe-cCCCCCeeEEEeCCCCCeEEEEEeCCCcEEEEEcCCCccceeecC--CCCeEEEEe
Q 036314          246 GSDPILRIWDPRKPGTSAPVFQF-SSHNSWISACKWHNKSWFHLISASYDGKVMLWDLRTAWPLSVIDS--HKDKVLCAD  322 (347)
Q Consensus       246 ~~d~~i~iwd~~~~~~~~~~~~~-~~h~~~v~~v~~s~~~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~--h~~~v~~~~  322 (347)
                      +..+.|.-.++....    ...+ .........+++.+.+..+..+-+..+.|...|++..........  ......+++
T Consensus       140 ~~~~~I~r~~~dGs~----~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~la  215 (266)
T d1ijqa1         140 GTPAKIKKGGLNGVD----IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLA  215 (266)
T ss_dssp             SSSCEEEEEETTSCC----EEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEE
T ss_pred             CCCcceeEeccCCCc----eecccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEE
Confidence            334567666665321    2232 333456788999888777666667778999999975433222222  223455666


Q ss_pred             ecCCCEEEEccCCceEEE
Q 036314          323 WWRGDSVISGGVDSKLCV  340 (347)
Q Consensus       323 ~~~~~~l~s~s~D~~v~v  340 (347)
                      ...+..+.+-..++.|..
T Consensus       216 v~~~~ly~td~~~~~I~~  233 (266)
T d1ijqa1         216 VFEDKVFWTDIINEAIFS  233 (266)
T ss_dssp             EETTEEEEEETTTTEEEE
T ss_pred             EECCEEEEEECCCCeEEE
Confidence            654544555444555543

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=81.04  E-value=14  Score=32.12  Aligned_cols=84  Identities=17%  Similarity=0.065  Sum_probs=44.5

Q ss_pred             CCcEEEEECCCCceeeeeeeCeeeEEEEeeCCCCcEEEEecCCCcEEEEeCCCCCCCCCeEEecCC-CCCeeEEEeCCCC
Q 036314          206 DHSVRTWDVEMGKDLSDIFCGKALNCIDIGGEGSALIAAGGSDPILRIWDPRKPGTSAPVFQFSSH-NSWISACKWHNKS  284 (347)
Q Consensus       206 dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~d~~i~iwd~~~~~~~~~~~~~~~h-~~~v~~v~~s~~~  284 (347)
                      .|.|..+|+++++.+=+.....+...-.+.-.+ .++.+|+.|+.++-+|.+..+   .+-++.-. ...-.-+.|..+|
T Consensus       443 ~G~l~AiD~~TG~~~W~~~~~~~~~~g~l~Tag-glVf~G~~dg~l~A~Da~tGe---~lW~~~l~~~~~a~P~ty~~dG  518 (571)
T d2ad6a1         443 MGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKG-GLVWYATLDGYLKALDNKDGK---ELWNFKMPSGGIGSPMTYSFKG  518 (571)
T ss_dssp             CEEEEEECTTTCCEEEEEEESSCCCSBCEEETT-TEEEEECTTSEEEEEETTTCC---EEEEEECSSCCCSCCEEEEETT
T ss_pred             cccEEEeccCCCceeeEcCCCCCCCcceeEecC-CEEEEECCCCeEEEEECCCCc---EEEEEECCCCceecceEEEECC
Confidence            367888898888765333322221111111122 366678999999999987543   23333211 1111224444577


Q ss_pred             CeEEEEEeC
Q 036314          285 WFHLISASY  293 (347)
Q Consensus       285 ~~~l~s~s~  293 (347)
                      ..+++....
T Consensus       519 kqYi~v~~g  527 (571)
T d2ad6a1         519 KQYIGSMYG  527 (571)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEEEEEec
Confidence            666655443