Citrus Sinensis ID: 036317

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100------
Protein Sequence
GPFDIFSDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTLPVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSARSGKEPPVIKWAPGSL
Secondary Structure (PSIPRED)
ccccEEEEccccccEEEEEEcccccEEEEEEcccEEEEEEcccccccccccccEEEEEccccccEEEEEEEcccEEEEEcccccEEEEEccccccccEEEEccccc
Secondary Structure Prediction (SSPRO)
cccEEEEEccccccEEEEEEcccccEEEEEEcccEEEEEEccccccccccccEEEEEEccccccccccccccccEEEEEccccEEEEEEcccccEEEEEEEccccc
Coil and Loop (DISEMBL)
gpfdifsdggdvsdanevklsndgRLMLLTTLEGHIHVLHsfqgtlpvshnstleaSFSQHLSLVALSVLILRSWVlegsgdgsvyawsarsgkeppvikwapgsl
Flexible Loop (DISEMBL)
gpfdifsdggdvsdanevKLSNDGRLMLLTTLEGHIHVLHSFQGTLPVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYawsarsgkeppvikwapgsl
Low Complexity Region (SEG)
GPFDIFSDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTLPVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSARSGKEPPVIKWAPGSL
Disordered region (IsUnstruct)
**********************DGRLMLLTTLEGHIHVLHSFQGTLPVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSA****************
Disordered Region (DISOPRED)
GPFDIFSDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTLPVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSARSGKEPPVIKWAPG**
Disordered Region (DISEMBL)
GPFDIFSDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTLPVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSARSGKEPPVIKWAPGSL
Disordered Region (DISPRO)
GPFDIFSDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTLPVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSARSGKEPPVIKWAPG**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
GPFDIFSDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTLPVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSARSGKEPPVIKWAPGSL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	106	2.2.26 [Sep-21-2011]
Q58E77	313	WD repeat-containing prot	N/A	no	0.830	0.281	0.317	8e-05
Q5ZMV7	313	WD repeat-containing prot	yes	no	0.830	0.281	0.317	0.0001
Q6GL39	313	WD repeat-containing prot	yes	no	0.830	0.281	0.299	0.0002
Q640J6	313	WD repeat-containing prot	N/A	no	0.830	0.281	0.299	0.0005
Q6NV31	313	WD repeat-containing prot	yes	no	0.613	0.207	0.337	0.0008

>sp|Q58E77|WD82B_XENLA WD repeat-containing protein 82-B OS=Xenopus laevis GN=wdr82-b PE=2 SV=1

 Score = 45.8 bits (107), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 54/107 (50%), Gaps = 19/107 (17%)

Query: 1   GPFDIFSDGGD-VSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQG----TLPVSHNS--- 52
           GPF  F    D   +   +K SNDG+L+LL+T  G + ++ +F+G    T    +NS   
Sbjct: 182 GPFATFKMQYDRTCEWTALKFSNDGKLILLSTNGGFLRLVDAFKGAVMHTFGGYNNSKAV 241

Query: 53  TLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSARSGKEPPVI 99
           TLEASF+               +++ GS DG ++ W+  SG +  V+
Sbjct: 242 TLEASFTPD-----------SQFIMIGSEDGKIHVWNCESGMKVAVL 277

Component of a chromatin regulatory complex involved in regulating chromatin structure in the nucleus.
Xenopus laevis (taxid: 8355)

>sp|Q5ZMV7|WDR82_CHICK WD repeat-containing protein 82 OS=Gallus gallus GN=WDR82 PE=2 SV=1

 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 54/107 (50%), Gaps = 19/107 (17%)

Query: 1   GPFDIFSDGGD-VSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQG----TLPVSHNS--- 52
           GPF  F    D   +   +K SNDG+L+L++T  G I ++ +F+G    T    +NS   
Sbjct: 182 GPFATFKMQYDRTCEWTGLKFSNDGKLILISTNGGFIRLIDAFKGAVLHTFGGYNNSKAV 241

Query: 53  TLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSARSGKEPPVI 99
           TLEASF+               +++ GS DG ++ W+  SG +  V+
Sbjct: 242 TLEASFTPD-----------SQFIMIGSEDGKIHVWNGESGMKVAVL 277

Component of a chromatin regulatory complex involved in regulating chromatin structure in the nucleus.

Gallus gallus (taxid: 9031)

>sp|Q6GL39|WDR82_XENTR WD repeat-containing protein 82 OS=Xenopus tropicalis GN=wdr82 PE=2 SV=1

 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 54/107 (50%), Gaps = 19/107 (17%)

Query: 1   GPFDIFSDGGD-VSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQG----TLPVSHNS--- 52
           GPF  F    D   +   +K SNDG+L+L++T  G + ++ +F+G    T    +NS   
Sbjct: 182 GPFATFKMQYDRTCEWTALKFSNDGKLILMSTNGGFLRLVDAFKGAVMHTFGGYNNSKAV 241

Query: 53  TLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSARSGKEPPVI 99
           TLEA+F+               +++ GS DG ++ W+  SG +  V+
Sbjct: 242 TLEATFTPD-----------SQFIMIGSEDGKIHVWNCESGMKVAVL 277

Component of a chromatin regulatory complex involved in regulating chromatin structure in the nucleus.

Xenopus tropicalis (taxid: 8364)

>sp|Q640J6|WD82A_XENLA WD repeat-containing protein 82-A OS=Xenopus laevis GN=wdr82-a PE=2 SV=1

 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 53/107 (49%), Gaps = 19/107 (17%)

Query: 1   GPFDIFSDGGD-VSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQG----TLPVSHNS--- 52
           GPF  F    D   +   +K S DG+L+L++T  G + ++ +F+G    T    +NS   
Sbjct: 182 GPFATFKMQYDRTCEWTSLKFSQDGKLILMSTNGGFLRLVDAFKGAVMHTFGGYNNSKAV 241

Query: 53  TLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSARSGKEPPVI 99
           TLEASF+               +++ GS DG ++ W+  SG +  V+
Sbjct: 242 TLEASFTPD-----------SQFIMIGSEDGKIHVWNCESGMKVAVL 277

Component of a chromatin regulatory complex involved in regulating chromatin structure in the nucleus.

Xenopus laevis (taxid: 8355)

>sp|Q6NV31|WDR82_DANRE WD repeat-containing protein 82 OS=Danio rerio GN=wdr82 PE=2 SV=1

 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 47/83 (56%), Gaps = 18/83 (21%)

Query: 18  VKLSNDGRLMLLTTLEGHIHVLHSFQGTLPVS---HNST----LEASFSQHLSLVALSVL 70
           +K SNDG+L+L++T  G + VL +F+G +  S   +N++    LEASF+           
Sbjct: 200 LKFSNDGKLILVSTNGGTLRVLDAFKGAVLHSFGGYNNSKGVILEASFTPD--------- 250

Query: 71  ILRSWVLEGSGDGSVYAWSARSG 93
               +++ GS DG ++ W+A SG
Sbjct: 251 --SQFIMIGSEDGKIHVWNAESG 271

Component of a chromatin regulatory complex involved in regulating chromatin structure in the nucleus.

Danio rerio (taxid: 7955)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	106
297735019	522	unnamed protein product [Vitis vinifera]	0.896	0.181	0.617	2e-30
147857700	328	hypothetical protein VITISV_020464 [Viti	0.896	0.289	0.617	6e-30
225431149	334	PREDICTED: WD repeat-containing protein	0.896	0.284	0.617	7e-30
356554143	334	PREDICTED: WD repeat-containing protein	0.896	0.284	0.6	2e-29
224133718	307	predicted protein [Populus trichocarpa]	0.896	0.309	0.617	8e-29
449434162	332	PREDICTED: WD repeat-containing protein	0.896	0.286	0.609	1e-28
449491362	332	PREDICTED: WD repeat-containing protein	0.896	0.286	0.609	1e-28
356563997	334	PREDICTED: WD repeat-containing protein	0.896	0.284	0.584	1e-28
217074372	334	unknown [Medicago truncatula] gi|3885018	0.896	0.284	0.576	2e-27
255579793	332	COMPASS component SWD2, putative [Ricinu	0.896	0.286	0.601	6e-27

>gi|297735019|emb|CBI17381.3| unnamed protein product [Vitis vinifera]

 Score =  136 bits (342), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 76/123 (61%), Positives = 83/123 (67%), Gaps = 28/123 (22%)

Query: 1   GPFDIFSDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL-------PVSHNST 53
           GPF+IFS GGD+SDAN VK SNDGRLMLLTT++GHIHVL SF+GTL       PVS  ST
Sbjct: 385 GPFEIFSVGGDISDANVVKFSNDGRLMLLTTMDGHIHVLDSFRGTLLSTYNVKPVSSTST 444

Query: 54  LEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSARSGK----------EPPVIKWAP 103
           LEASFS               +V+ GSGDGSVYAWS RSGK          EPPVIKWAP
Sbjct: 445 LEASFSPE-----------GMFVISGSGDGSVYAWSVRSGKEVASWMSTETEPPVIKWAP 493

Query: 104 GSL 106
           GSL
Sbjct: 494 GSL 496

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147857700|emb|CAN80813.1| hypothetical protein VITISV_020464 [Vitis vinifera]

 Score =  134 bits (337), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 76/123 (61%), Positives = 83/123 (67%), Gaps = 28/123 (22%)

Query: 1   GPFDIFSDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL-------PVSHNST 53
           GPF+IFS GGD+SDAN VK SNDGRLMLLTT++GHIHVL SF+GTL       PVS  ST
Sbjct: 191 GPFEIFSVGGDISDANVVKFSNDGRLMLLTTMDGHIHVLDSFRGTLLSTYNVKPVSSTST 250

Query: 54  LEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSARSGK----------EPPVIKWAP 103
           LEASFS               +V+ GSGDGSVYAWS RSGK          EPPVIKWAP
Sbjct: 251 LEASFSPE-----------GMFVISGSGDGSVYAWSVRSGKEVASWMSTETEPPVIKWAP 299

Query: 104 GSL 106
           GSL
Sbjct: 300 GSL 302

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225431149|ref|XP_002268226.1| PREDICTED: WD repeat-containing protein 82-B-like [Vitis vinifera]

 Score =  134 bits (337), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 76/123 (61%), Positives = 83/123 (67%), Gaps = 28/123 (22%)

Query: 1   GPFDIFSDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL-------PVSHNST 53
           GPF+IFS GGD+SDAN VK SNDGRLMLLTT++GHIHVL SF+GTL       PVS  ST
Sbjct: 197 GPFEIFSVGGDISDANVVKFSNDGRLMLLTTMDGHIHVLDSFRGTLLSTYNVKPVSSTST 256

Query: 54  LEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSARSGK----------EPPVIKWAP 103
           LEASFS               +V+ GSGDGSVYAWS RSGK          EPPVIKWAP
Sbjct: 257 LEASFSPE-----------GMFVISGSGDGSVYAWSVRSGKEVASWMSTETEPPVIKWAP 305

Query: 104 GSL 106
           GSL
Sbjct: 306 GSL 308

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356554143|ref|XP_003545408.1| PREDICTED: WD repeat-containing protein 82-B-like [Glycine max]

 Score =  133 bits (334), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 75/125 (60%), Positives = 83/125 (66%), Gaps = 30/125 (24%)

Query: 1   GPFDIFSDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL-------PVSHNST 53
           GPF+IFS GGD+SDAN VK SNDGRLMLLTT +GHIHVL SF+GTL       P+S NST
Sbjct: 195 GPFEIFSVGGDISDANVVKFSNDGRLMLLTTADGHIHVLDSFRGTLLSTYIVTPISCNST 254

Query: 54  LEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSARSGKE------------PPVIKW 101
           LEASFS               +V+ GSGDGS+YAWS RSGKE            PPVIKW
Sbjct: 255 LEASFSPE-----------GMFVISGSGDGSIYAWSVRSGKEVASWRSATSDTGPPVIKW 303

Query: 102 APGSL 106
           APGSL
Sbjct: 304 APGSL 308

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224133718|ref|XP_002327663.1| predicted protein [Populus trichocarpa] gi|222836748|gb|EEE75141.1| predicted protein [Populus trichocarpa]

 Score =  130 bits (328), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 76/123 (61%), Positives = 82/123 (66%), Gaps = 28/123 (22%)

Query: 1   GPFDIFSDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL-------PVSHNST 53
           GPFDIFS GGDVSDAN VK SNDGRLMLLTT++GHIHVL SF+GTL       PVS NST
Sbjct: 181 GPFDIFSVGGDVSDANAVKFSNDGRLMLLTTMDGHIHVLDSFRGTLLSTYNVKPVSINST 240

Query: 54  LEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSARSGK----------EPPVIKWAP 103
           LEASFS               +V+ GSGDG V+AWS RSGK          EP VIKWAP
Sbjct: 241 LEASFSPE-----------GKFVVSGSGDGRVHAWSVRSGKEVASWVTYETEPHVIKWAP 289

Query: 104 GSL 106
           GSL
Sbjct: 290 GSL 292

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449434162|ref|XP_004134865.1| PREDICTED: WD repeat-containing protein 82-B-like [Cucumis sativus]

 Score =  130 bits (326), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 75/123 (60%), Positives = 81/123 (65%), Gaps = 28/123 (22%)

Query: 1   GPFDIFSDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL-------PVSHNST 53
           GPFDIFS G D+SDAN VK SNDGRLMLLTT +GHIHVL SF+GTL       P+S N T
Sbjct: 195 GPFDIFSVGEDLSDANIVKFSNDGRLMLLTTSDGHIHVLDSFRGTLLSTYNVKPISRNLT 254

Query: 54  LEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSARSGK----------EPPVIKWAP 103
           LEASFS               +V+ GSGDGSVYAWS RSGK          EPPVIKWAP
Sbjct: 255 LEASFSPE-----------GMFVISGSGDGSVYAWSVRSGKEVASWMSTEMEPPVIKWAP 303

Query: 104 GSL 106
           GSL
Sbjct: 304 GSL 306

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449491362|ref|XP_004158872.1| PREDICTED: WD repeat-containing protein 82-B-like [Cucumis sativus]

 Score =  130 bits (326), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 75/123 (60%), Positives = 81/123 (65%), Gaps = 28/123 (22%)

Query: 1   GPFDIFSDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL-------PVSHNST 53
           GPFDIFS G D+SDAN VK SNDGRLMLLTT +GHIHVL SF+GTL       P+S N T
Sbjct: 195 GPFDIFSVGEDLSDANIVKFSNDGRLMLLTTSDGHIHVLDSFRGTLLSTYNVKPISRNLT 254

Query: 54  LEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSARSGK----------EPPVIKWAP 103
           LEASFS               +V+ GSGDGSVYAWS RSGK          EPPVIKWAP
Sbjct: 255 LEASFSPE-----------GMFVISGSGDGSVYAWSVRSGKEVASWMSTEMEPPVIKWAP 303

Query: 104 GSL 106
           GSL
Sbjct: 304 GSL 306

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356563997|ref|XP_003550243.1| PREDICTED: WD repeat-containing protein 82-B-like [Glycine max]

 Score =  130 bits (326), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 73/125 (58%), Positives = 83/125 (66%), Gaps = 30/125 (24%)

Query: 1   GPFDIFSDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL-------PVSHNST 53
           GPF+IFS GGD+SDAN VK SNDGRLMLLTT +GHIHVL +F+GTL       PVS NST
Sbjct: 195 GPFEIFSVGGDISDANVVKFSNDGRLMLLTTADGHIHVLDTFRGTLLSTYNVTPVSCNST 254

Query: 54  LEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSARSGKE------------PPVIKW 101
           LEASFS               +++ GSG+GS+YAWS RSGKE            PPVIKW
Sbjct: 255 LEASFSPE-----------GMFIISGSGEGSIYAWSVRSGKEVASWRSATSDTGPPVIKW 303

Query: 102 APGSL 106
           APGSL
Sbjct: 304 APGSL 308

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217074372|gb|ACJ85546.1| unknown [Medicago truncatula] gi|388501886|gb|AFK39009.1| unknown [Medicago truncatula]

 Score =  126 bits (316), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 72/125 (57%), Positives = 82/125 (65%), Gaps = 30/125 (24%)

Query: 1   GPFDIFSDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL-------PVSHNST 53
           GPF++FS GGDVSDAN VK SNDGRL+L+TT +GHIHVL SF+GTL       PVS NST
Sbjct: 195 GPFELFSVGGDVSDANVVKFSNDGRLLLVTTTDGHIHVLDSFRGTLLFAYNVTPVSCNST 254

Query: 54  LEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSARSGKE------------PPVIKW 101
           LEASFS               +V+  SGDGS+YAWS RSGKE            PPV+KW
Sbjct: 255 LEASFSPD-----------GMFVISSSGDGSIYAWSVRSGKEVASWRSATSDIGPPVVKW 303

Query: 102 APGSL 106
           APGSL
Sbjct: 304 APGSL 308

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255579793|ref|XP_002530734.1| COMPASS component SWD2, putative [Ricinus communis] gi|223529698|gb|EEF31640.1| COMPASS component SWD2, putative [Ricinus communis]

 Score =  124 bits (312), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 74/123 (60%), Positives = 82/123 (66%), Gaps = 28/123 (22%)

Query: 1   GPFDIFSDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL-------PVSHNST 53
           GPF+IFS GGDVSDA+ VK SNDGRLMLLTT++GHIHVL SF+GTL       PV  NST
Sbjct: 195 GPFEIFSVGGDVSDAHVVKFSNDGRLMLLTTVDGHIHVLDSFRGTLLSTYNVKPVLTNST 254

Query: 54  LEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSARSGK----------EPPVIKWAP 103
           LEASFS               +V+ GSGDGSV+AWS RSGK          EP VIKWAP
Sbjct: 255 LEASFSPE-----------GMFVVSGSGDGSVHAWSVRSGKEVASWMTYETEPHVIKWAP 303

Query: 104 GSL 106
           GSL
Sbjct: 304 GSL 306

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	106
TAIR|locus:2154996	331	AT5G66240 "AT5G66240" [Arabido	0.886	0.283	0.540	4.2e-24
TAIR|locus:2222612	330	AT5G14530 "AT5G14530" [Arabido	0.830	0.266	0.373	2.1e-12
UNIPROTKB|Q5ZMV7	313	WDR82 "WD repeat-containing pr	0.830	0.281	0.317	2.8e-05
UNIPROTKB|E1BRZ6	601	TWF2 "Twinfilin-2" [Gallus gal	0.830	0.146	0.317	7.6e-05
UNIPROTKB|E2RGF2	313	WDR82 "Uncharacterized protein	0.896	0.303	0.31	7.7e-05
UNIPROTKB|Q6UXN9	313	WDR82 "WD repeat-containing pr	0.896	0.303	0.31	7.7e-05
UNIPROTKB|F2Z5U3	313	WDR82 "Uncharacterized protein	0.896	0.303	0.31	7.7e-05
MGI|MGI:1924555	313	Wdr82 "WD repeat domain contai	0.896	0.303	0.31	7.7e-05
UNIPROTKB|F1MG94	602	WDR82 "Uncharacterized protein	0.896	0.157	0.31	0.0002
DICTYBASE|DDB_G0278945	319	DDB_G0278945 "WD repeat-contai	0.886	0.294	0.292	0.00022

TAIR|locus:2154996 AT5G66240 "AT5G66240" [Arabidopsis thaliana (taxid:3702)]

 Score = 276 (102.2 bits), Expect = 4.2e-24, P = 4.2e-24
 Identities = 66/122 (54%), Positives = 78/122 (63%)

Query:     1 GPFDIFSDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL-------PVSHNST 53
             GPF+IFS GGD+S+AN VK SNDGRLMLLTT++G IHVL SF+GTL       PV+  ST
Sbjct:   194 GPFEIFSVGGDLSEANVVKFSNDGRLMLLTTMDGFIHVLDSFRGTLLSTFSVKPVAGEST 253

Query:    54 LEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSARSGK----------EPPVIKWAP 103
             L+A+FS               +V+ GSGDGS +AW  RSGK          EPPVIKW P
Sbjct:   254 LDAAFSPE-----------GMFVVSGSGDGSTHAWGVRSGKQVHSWMGLGSEPPVIKWGP 302

Query:   104 GS 105
             GS
Sbjct:   303 GS 304

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

GO:0048573 "photoperiodism, flowering" evidence=RCA

TAIR|locus:2222612 AT5G14530 "AT5G14530" [Arabidopsis thaliana (taxid:3702)]

 Score = 170 (64.9 bits), Expect = 2.1e-12, P = 2.1e-12
 Identities = 40/107 (37%), Positives = 62/107 (57%)

Query:     1 GPFDIFSDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQG------TLPVSHNSTL 54
             GPFD F  GGD ++ N++K SNDG+ MLLTT   +I+VL +++G      +L  S  + +
Sbjct:   189 GPFDTFLVGGDTAEVNDIKFSNDGKSMLLTTTNNNIYVLDAYRGEKKCGFSLEPSQGTPI 248

Query:    55 EASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSARSGKEPPVIKW 101
             EA+F+               +VL GSGDG+++AW+  +  E  V +W
Sbjct:   249 EATFTPD-----------GKYVLSGSGDGTLHAWNIENPSE--VARW 282

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

GO:0048573 "photoperiodism, flowering" evidence=RCA

UNIPROTKB|Q5ZMV7 WDR82 "WD repeat-containing protein 82" [Gallus gallus (taxid:9031)]

 Score = 105 (42.0 bits), Expect = 2.8e-05, P = 2.8e-05
 Identities = 34/107 (31%), Positives = 53/107 (49%)

Query:     1 GPFDIFSDGGD-VSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQG----TLPVSHNS--- 52
             GPF  F    D   +   +K SNDG+L+L++T  G I ++ +F+G    T    +NS   
Sbjct:   182 GPFATFKMQYDRTCEWTGLKFSNDGKLILISTNGGFIRLIDAFKGAVLHTFGGYNNSKAV 241

Query:    53 TLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSARSGKEPPVI 99
             TLEASF+     + +           GS DG ++ W+  SG +  V+
Sbjct:   242 TLEASFTPDSQFIMI-----------GSEDGKIHVWNGESGMKVAVL 277

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|E1BRZ6 TWF2 "Twinfilin-2" [Gallus gallus (taxid:9031)]

 Score = 105 (42.0 bits), Expect = 7.6e-05, P = 7.6e-05
 Identities = 34/107 (31%), Positives = 53/107 (49%)

Query:     1 GPFDIFSDGGD-VSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQG----TLPVSHNS--- 52
             GPF  F    D   +   +K SNDG+L+L++T  G I ++ +F+G    T    +NS   
Sbjct:   183 GPFATFKMQYDRTCEWTGLKFSNDGKLILISTNGGFIRLIDAFKGAVLHTFGGYNNSKAV 242

Query:    53 TLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSARSGKEPPVI 99
             TLEASF+     + +           GS DG ++ W+  SG +  V+
Sbjct:   243 TLEASFTPDSQFIMI-----------GSEDGKIHVWNGESGMKVAVL 278

GO:0003779 "actin binding" evidence=IEA

GO:0000785 "chromatin" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0042800 "histone methyltransferase activity (H3-K4 specific)" evidence=IEA

GO:0048188 "Set1C/COMPASS complex" evidence=IEA

GO:0072357 "PTW/PP1 phosphatase complex" evidence=IEA

UNIPROTKB|E2RGF2 WDR82 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 101 (40.6 bits), Expect = 7.7e-05, P = 7.7e-05
 Identities = 31/100 (31%), Positives = 53/100 (53%)

Query:     1 GPFDIFSDGGD-VSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTLPVSHNSTLEASFS 59
             GPF  F    D   +   +K SNDG+L+L++T    I ++ +F+G   V H     A+ S
Sbjct:   182 GPFATFKMQYDRTCEWTGLKFSNDGKLILISTNGSFIRLIDAFKGV--VMHTFGGYAN-S 238

Query:    60 QHLSLVALSVLILRSWVLEGSGDGSVYAWSARSGKEPPVI 99
             + ++L A S      +++ GS DG ++ W+  SG +  V+
Sbjct:   239 KAVTLEA-SFTPDSQFIMIGSEDGKIHVWNGESGIKVAVL 277

GO:0072357 "PTW/PP1 phosphatase complex" evidence=IEA

GO:0048188 "Set1C/COMPASS complex" evidence=IEA

GO:0042800 "histone methyltransferase activity (H3-K4 specific)" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0000785 "chromatin" evidence=IEA

UNIPROTKB|Q6UXN9 WDR82 "WD repeat-containing protein 82" [Homo sapiens (taxid:9606)]

 Score = 101 (40.6 bits), Expect = 7.7e-05, P = 7.7e-05
 Identities = 31/100 (31%), Positives = 53/100 (53%)

Query:     1 GPFDIFSDGGD-VSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTLPVSHNSTLEASFS 59
             GPF  F    D   +   +K SNDG+L+L++T    I ++ +F+G   V H     A+ S
Sbjct:   182 GPFATFKMQYDRTCEWTGLKFSNDGKLILISTNGSFIRLIDAFKGV--VMHTFGGYAN-S 238

Query:    60 QHLSLVALSVLILRSWVLEGSGDGSVYAWSARSGKEPPVI 99
             + ++L A S      +++ GS DG ++ W+  SG +  V+
Sbjct:   239 KAVTLEA-SFTPDSQFIMIGSEDGKIHVWNGESGIKVAVL 277

GO:0003682 "chromatin binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0048188 "Set1C/COMPASS complex" evidence=IDA

GO:0000785 "chromatin" evidence=IDA

GO:0072357 "PTW/PP1 phosphatase complex" evidence=IDA

GO:0035097 "histone methyltransferase complex" evidence=IDA

GO:0051568 "histone H3-K4 methylation" evidence=IDA

GO:0042800 "histone methyltransferase activity (H3-K4 specific)" evidence=IDA

UNIPROTKB|F2Z5U3 WDR82 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 101 (40.6 bits), Expect = 7.7e-05, P = 7.7e-05
 Identities = 31/100 (31%), Positives = 53/100 (53%)

Query:     1 GPFDIFSDGGD-VSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTLPVSHNSTLEASFS 59
             GPF  F    D   +   +K SNDG+L+L++T    I ++ +F+G   V H     A+ S
Sbjct:   182 GPFATFKMQYDRTCEWTGLKFSNDGKLILISTNGSFIRLIDAFKGV--VMHTFGGYAN-S 238

Query:    60 QHLSLVALSVLILRSWVLEGSGDGSVYAWSARSGKEPPVI 99
             + ++L A S      +++ GS DG ++ W+  SG +  V+
Sbjct:   239 KAVTLEA-SFTPDSQFIMIGSEDGKIHVWNGESGIKVAVL 277

GO:0072357 "PTW/PP1 phosphatase complex" evidence=IEA

GO:0048188 "Set1C/COMPASS complex" evidence=IEA

GO:0042800 "histone methyltransferase activity (H3-K4 specific)" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0000785 "chromatin" evidence=IEA

MGI|MGI:1924555 Wdr82 "WD repeat domain containing 82" [Mus musculus (taxid:10090)]

 Score = 101 (40.6 bits), Expect = 7.7e-05, P = 7.7e-05
 Identities = 31/100 (31%), Positives = 53/100 (53%)

Query:     1 GPFDIFSDGGD-VSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTLPVSHNSTLEASFS 59
             GPF  F    D   +   +K SNDG+L+L++T    I ++ +F+G   V H     A+ S
Sbjct:   182 GPFATFKMQYDRTCEWTGLKFSNDGKLILISTNGSFIRLIDAFKGV--VMHTFGGYAN-S 238

Query:    60 QHLSLVALSVLILRSWVLEGSGDGSVYAWSARSGKEPPVI 99
             + ++L A S      +++ GS DG ++ W+  SG +  V+
Sbjct:   239 KAVTLEA-SFTPDSQFIMIGSEDGKIHVWNGESGIKVAVL 277

GO:0000785 "chromatin" evidence=ISO

GO:0003682 "chromatin binding" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0035097 "histone methyltransferase complex" evidence=ISO

GO:0048188 "Set1C/COMPASS complex" evidence=ISO

GO:0051568 "histone H3-K4 methylation" evidence=ISO;IMP

GO:0072357 "PTW/PP1 phosphatase complex" evidence=ISO

UNIPROTKB|F1MG94 WDR82 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 101 (40.6 bits), Expect = 0.00020, P = 0.00020
 Identities = 31/100 (31%), Positives = 53/100 (53%)

Query:     1 GPFDIFSDGGD-VSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTLPVSHNSTLEASFS 59
             GPF  F    D   +   +K SNDG+L+L++T    I ++ +F+G   V H     A+ S
Sbjct:   182 GPFATFKMQYDRTCEWTGLKFSNDGKLILISTNGSFIRLIDAFKGV--VMHTFGGYAN-S 238

Query:    60 QHLSLVALSVLILRSWVLEGSGDGSVYAWSARSGKEPPVI 99
             + ++L A S      +++ GS DG ++ W+  SG +  V+
Sbjct:   239 KAVTLEA-SFTPDSQFIMIGSEDGKIHVWNGESGIKVAVL 277

GO:0072357 "PTW/PP1 phosphatase complex" evidence=IEA

GO:0048188 "Set1C/COMPASS complex" evidence=IEA

GO:0042800 "histone methyltransferase activity (H3-K4 specific)" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0000785 "chromatin" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

DICTYBASE|DDB_G0278945 DDB_G0278945 "WD repeat-containing protein 82" [Dictyostelium discoideum (taxid:44689)]

 Score = 97 (39.2 bits), Expect = 0.00022, P = 0.00022
 Identities = 29/99 (29%), Positives = 49/99 (49%)

Query:     1 GPFDIFSDGGDVS-DANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTLPVSHNSTLEASFS 59
             GPF  FS    +  +   +K + DG+ +LL+T    I ++ SF G +   + S      +
Sbjct:   188 GPFSSFSIDHPIPVEWTSMKFTADGKYILLSTKTNIIFLIDSFTGEVKQRYTSFK----N 243

Query:    60 QHLSLVALSVLILRSWVLEGSGDGSVYAWSARSGKEPPV 98
              + S++  S      +VL GS DG+V+ W   +G+E  V
Sbjct:   244 DNGSVIESSFSPDAQYVLSGSEDGTVHIWKTLTGEEVAV 282

GO:0030587 "sorocarp development" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00036790001	SubName- Full=Chromosome chr4 scaffold_83, whole genome shotgun sequence; (310 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00014835001	SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (448 aa)			•						0.496
	GSVIVG00017915001	SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (459 aa)			•						0.493
	GSVIVG00038020001	SubName- Full=Chromosome chr14 scaffold_9, whole genome shotgun sequence; (438 aa)			•						0.489
	GSVIVG00032589001	SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (331 aa)			•						0.489
	GSVIVG00027473001	SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (339 aa)			•						0.487
	GSVIVG00034167001	SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (405 aa)			•						0.485
	GSVIVG00014907001	SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (336 aa)			•						0.482
	GSVIVG00003115001	SubName- Full=Chromosome undetermined scaffold_139, whole genome shotgun sequence; (352 aa)			•						0.480
	GSVIVG00026345001	SubName- Full=Chromosome chr15 scaffold_37, whole genome shotgun sequence; (439 aa)			•						0.477
	GSVIVG00001955001	SubName- Full=Chromosome chr5 scaffold_124, whole genome shotgun sequence; (312 aa)			•						0.476

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	106
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.8
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	99.73
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	99.68
KOG0279	315	consensus G protein beta subunit-like protein [Sig	99.63
KOG0279	315	consensus G protein beta subunit-like protein [Sig	99.62
KOG0263	707	consensus Transcription initiation factor TFIID, s	99.6
KOG0266	456	consensus WD40 repeat-containing protein [General	99.6
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	99.58
KOG0266	456	consensus WD40 repeat-containing protein [General	99.58
KOG0286	343	consensus G-protein beta subunit [General function	99.57
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	99.55
KOG0263	707	consensus Transcription initiation factor TFIID, s	99.55
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.55
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.53
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.52
PTZ00421	493	coronin; Provisional	99.51
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.5
PTZ00420	568	coronin; Provisional	99.48
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.47
KOG0315	311	consensus G-protein beta subunit-like protein (con	99.45
KOG0645	312	consensus WD40 repeat protein [General function pr	99.45
PTZ00421	493	coronin; Provisional	99.44
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.44
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.43
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.43
KOG0315	311	consensus G-protein beta subunit-like protein (con	99.42
KOG0286	343	consensus G-protein beta subunit [General function	99.41
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.4
KOG1273	405	consensus WD40 repeat protein [General function pr	99.4
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.39
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.39
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.39
KOG0643	327	consensus Translation initiation factor 3, subunit	99.38
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.37
KOG2096	420	consensus WD40 repeat protein [General function pr	99.34
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.34
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.33
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	99.33
KOG1274	933	consensus WD40 repeat protein [General function pr	99.33
PTZ00420	568	coronin; Provisional	99.32
KOG0289	506	consensus mRNA splicing factor [General function p	99.32
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.29
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.29
KOG0645	312	consensus WD40 repeat protein [General function pr	99.28
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	99.28
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.28
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.28
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.27
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.27
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.26
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.25
KOG0296	399	consensus Angio-associated migratory cell protein	99.25
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.24
KOG0643	327	consensus Translation initiation factor 3, subunit	99.23
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.22
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.22
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.21
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.2
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.2
PLN00181	793	protein SPA1-RELATED; Provisional	99.2
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.19
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.19
KOG1539	910	consensus WD repeat protein [General function pred	99.19
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.18
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.18
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.18
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.17
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.17
PLN00181	793	protein SPA1-RELATED; Provisional	99.16
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.14
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.14
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.13
KOG1539	910	consensus WD repeat protein [General function pred	99.13
KOG0296	399	consensus Angio-associated migratory cell protein	99.13
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.13
KOG0267	825	consensus Microtubule severing protein katanin p80	99.12
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.12
KOG0289	506	consensus mRNA splicing factor [General function p	99.12
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.12
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.12
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.12
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.12
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.11
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.11
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.1
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.07
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.07
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.05
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.04
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.04
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.03
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.03
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.02
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.02
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.01
KOG1274	933	consensus WD40 repeat protein [General function pr	99.01
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.0
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.0
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	98.99
KOG1407	313	consensus WD40 repeat protein [Function unknown]	98.98
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	98.98
KOG0288	459	consensus WD40 repeat protein TipD [General functi	98.97
KOG0649	325	consensus WD40 repeat protein [General function pr	98.97
KOG0646	476	consensus WD40 repeat protein [General function pr	98.96
KOG2055	514	consensus WD40 repeat protein [General function pr	98.94
KOG0267	825	consensus Microtubule severing protein katanin p80	98.93
KOG0302	440	consensus Ribosome Assembly protein [General funct	98.92
KOG0294	362	consensus WD40 repeat-containing protein [Function	98.91
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	98.9
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	98.89
COG4946	668	Uncharacterized protein related to the periplasmic	98.89
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	98.88
KOG0294	362	consensus WD40 repeat-containing protein [Function	98.88
KOG2110	391	consensus Uncharacterized conserved protein, conta	98.87
KOG0310	487	consensus Conserved WD40 repeat-containing protein	98.87
KOG0303	472	consensus Actin-binding protein Coronin, contains	98.87
KOG0308	735	consensus Conserved WD40 repeat-containing protein	98.87
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	98.86
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	98.86
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	98.86
KOG0639	705	consensus Transducin-like enhancer of split protei	98.85
KOG0771	398	consensus Prolactin regulatory element-binding pro	98.84
KOG0310	487	consensus Conserved WD40 repeat-containing protein	98.81
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	98.8
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	98.8
KOG2111	346	consensus Uncharacterized conserved protein, conta	98.78
KOG4283	397	consensus Transcription-coupled repair protein CSA	98.78
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	98.78
KOG0300	481	consensus WD40 repeat-containing protein [Function	98.78
KOG1273	405	consensus WD40 repeat protein [General function pr	98.73
KOG0270	463	consensus WD40 repeat-containing protein [Function	98.72
KOG1063	764	consensus RNA polymerase II elongator complex, sub	98.72
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	98.71
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	98.71
KOG0641	350	consensus WD40 repeat protein [General function pr	98.71
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	98.71
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	98.71
KOG2096	420	consensus WD40 repeat protein [General function pr	98.71
KOG2048	691	consensus WD40 repeat protein [General function pr	98.7
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	98.7
PRK01742	429	tolB translocation protein TolB; Provisional	98.7
KOG0269	839	consensus WD40 repeat-containing protein [Function	98.69
KOG0641	350	consensus WD40 repeat protein [General function pr	98.68
KOG0771	398	consensus Prolactin regulatory element-binding pro	98.68
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.67
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	98.66
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	98.66
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	98.66
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	98.65
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	98.63
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	98.63
PRK05137	435	tolB translocation protein TolB; Provisional	98.62
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	98.61
KOG0290	364	consensus Conserved WD40 repeat-containing protein	98.61
KOG1963	792	consensus WD40 repeat protein [General function pr	98.61
KOG2110	391	consensus Uncharacterized conserved protein, conta	98.6
KOG0639	705	consensus Transducin-like enhancer of split protei	98.59
KOG4283	397	consensus Transcription-coupled repair protein CSA	98.58
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	98.57
KOG4328	498	consensus WD40 protein [Function unknown]	98.56
KOG0270	463	consensus WD40 repeat-containing protein [Function	98.56
KOG0644	1113	consensus Uncharacterized conserved protein, conta	98.55
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.54
KOG1310	758	consensus WD40 repeat protein [General function pr	98.54
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	98.54
KOG0303	472	consensus Actin-binding protein Coronin, contains	98.53
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	98.53
KOG0300	481	consensus WD40 repeat-containing protein [Function	98.53
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	98.53
KOG2139	445	consensus WD40 repeat protein [General function pr	98.52
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.52
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	98.52
PRK03629	429	tolB translocation protein TolB; Provisional	98.51
KOG2048	691	consensus WD40 repeat protein [General function pr	98.51
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	98.48
KOG2106	626	consensus Uncharacterized conserved protein, conta	98.48
KOG0290	364	consensus Conserved WD40 repeat-containing protein	98.47
PRK04922	433	tolB translocation protein TolB; Provisional	98.46
KOG2055	514	consensus WD40 repeat protein [General function pr	98.46
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.45
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	98.44
PRK02889	427	tolB translocation protein TolB; Provisional	98.44
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	98.43
KOG0646	476	consensus WD40 repeat protein [General function pr	98.43
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	98.43
PRK00178	430	tolB translocation protein TolB; Provisional	98.42
KOG3881	412	consensus Uncharacterized conserved protein [Funct	98.42
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	98.4
COG2319	466	FOG: WD40 repeat [General function prediction only	98.39
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	98.38
PRK03629	429	tolB translocation protein TolB; Provisional	98.38
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	98.38
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	98.38
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	98.35
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	98.34
KOG2106	626	consensus Uncharacterized conserved protein, conta	98.33
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	98.33
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	98.33
KOG1188	376	consensus WD40 repeat protein [General function pr	98.32
PRK04792	448	tolB translocation protein TolB; Provisional	98.31
KOG2321	703	consensus WD40 repeat protein [General function pr	98.31
PRK05137	435	tolB translocation protein TolB; Provisional	98.3
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	98.3
KOG0308	735	consensus Conserved WD40 repeat-containing protein	98.3
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	98.29
KOG0301	745	consensus Phospholipase A2-activating protein (con	98.27
PRK01029	428	tolB translocation protein TolB; Provisional	98.25
PRK02889	427	tolB translocation protein TolB; Provisional	98.22
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	98.22
PRK11028	330	6-phosphogluconolactonase; Provisional	98.21
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	98.18
PRK11028	330	6-phosphogluconolactonase; Provisional	98.17
PRK01742	429	tolB translocation protein TolB; Provisional	98.17
PRK04922	433	tolB translocation protein TolB; Provisional	98.16
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	98.12
KOG4328	498	consensus WD40 protein [Function unknown]	98.12
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	98.11
KOG2315	566	consensus Predicted translation initiation factor	98.11
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	98.09
KOG1963	792	consensus WD40 repeat protein [General function pr	98.06
KOG4547	541	consensus WD40 repeat-containing protein [General	98.05
PRK00178	430	tolB translocation protein TolB; Provisional	98.01
COG2319	466	FOG: WD40 repeat [General function prediction only	98.01
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	98.0
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	97.99
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	97.98
PRK04792	448	tolB translocation protein TolB; Provisional	97.98
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	97.98
KOG4227	609	consensus WD40 repeat protein [General function pr	97.97
KOG4532	344	consensus WD40-like repeat containing protein [Gen	97.94
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	97.93
COG4946	668	Uncharacterized protein related to the periplasmic	97.91
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	97.9
KOG2139	445	consensus WD40 repeat protein [General function pr	97.9
KOG0280	339	consensus Uncharacterized conserved protein [Amino	97.89
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	97.86
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	97.86
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	97.85
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	97.85
KOG0301	745	consensus Phospholipase A2-activating protein (con	97.83
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	97.83
PRK01029	428	tolB translocation protein TolB; Provisional	97.83
KOG2111	346	consensus Uncharacterized conserved protein, conta	97.82
KOG1188	376	consensus WD40 repeat protein [General function pr	97.72
KOG0649	325	consensus WD40 repeat protein [General function pr	97.69
KOG0644	1113	consensus Uncharacterized conserved protein, conta	97.67
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	97.66
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.66
KOG2314	698	consensus Translation initiation factor 3, subunit	97.6
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	97.6
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.57
PRK04043	419	tolB translocation protein TolB; Provisional	97.56
KOG4227	609	consensus WD40 repeat protein [General function pr	97.56
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	97.56
KOG1310	758	consensus WD40 repeat protein [General function pr	97.55
KOG2321	703	consensus WD40 repeat protein [General function pr	97.53
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	97.5
KOG3881	412	consensus Uncharacterized conserved protein [Funct	97.47
PRK04043	419	tolB translocation protein TolB; Provisional	97.47
KOG1334	559	consensus WD40 repeat protein [General function pr	97.46
KOG4714	319	consensus Nucleoporin [Nuclear structure]	97.46
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	97.44
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	97.4
KOG2041	1189	consensus WD40 repeat protein [General function pr	97.36
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	97.35
KOG2695	425	consensus WD40 repeat protein [General function pr	97.35
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	97.32
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.31
KOG1409	404	consensus Uncharacterized conserved protein, conta	97.3
KOG2314	698	consensus Translation initiation factor 3, subunit	97.23
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	97.21
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.21
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	96.98
KOG4532	344	consensus WD40-like repeat containing protein [Gen	96.97
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	96.96
KOG3621	726	consensus WD40 repeat-containing protein [General	96.94
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	96.94
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	96.88
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	96.87
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	96.84
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	96.82
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	96.77
KOG0280	339	consensus Uncharacterized conserved protein [Amino	96.72
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	96.7
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	96.69
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	96.63
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	96.57
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	96.56
KOG1334	559	consensus WD40 repeat protein [General function pr	96.53
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	96.53
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	96.52
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	96.5
KOG2695	425	consensus WD40 repeat protein [General function pr	96.32
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	96.3
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	96.28
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	96.28
KOG2315	566	consensus Predicted translation initiation factor	96.24
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	96.2
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	96.2
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.19
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	96.11
KOG3621	726	consensus WD40 repeat-containing protein [General	96.1
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	96.07
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	96.01
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	95.95
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	95.93
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	95.84
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	95.63
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	95.41
PRK13616	591	lipoprotein LpqB; Provisional	95.39
PRK02888	635	nitrous-oxide reductase; Validated	95.33
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	95.31
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	95.24
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	95.22
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	95.13
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	95.1
KOG1912	1062	consensus WD40 repeat protein [General function pr	95.1
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	95.02
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	95.01
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	94.97
KOG4547	541	consensus WD40 repeat-containing protein [General	94.97
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	94.95
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	94.8
KOG2041	1189	consensus WD40 repeat protein [General function pr	94.78
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	94.72
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	94.71
KOG4714	319	consensus Nucleoporin [Nuclear structure]	94.7
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	94.68
PRK02888	635	nitrous-oxide reductase; Validated	94.63
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	94.56
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	94.45
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	94.4
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	93.87
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	93.7
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	93.64
KOG1008	783	consensus Uncharacterized conserved protein, conta	93.38
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	93.28
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	93.18
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	93.12
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	93.12
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	92.81
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	92.74
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	92.7
COG3391	381	Uncharacterized conserved protein [Function unknow	92.64
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	92.61
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	92.47
PRK10115	686	protease 2; Provisional	92.47
KOG1912	1062	consensus WD40 repeat protein [General function pr	92.39
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	92.39
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	92.32
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	92.29
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	92.12
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	92.08
PRK13616	591	lipoprotein LpqB; Provisional	92.02
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	91.99
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	91.35
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	91.27
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	91.26
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	91.05
KOG1409	404	consensus Uncharacterized conserved protein, conta	90.85
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	90.57
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	90.36
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	90.03
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	89.88
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	89.69
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	89.67
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	89.31
KOG2377	657	consensus Uncharacterized conserved protein [Funct	89.22
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	88.93
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	88.78
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	87.39
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	87.09
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	86.94
PF14269	299	Arylsulfotran_2: Arylsulfotransferase (ASST)	86.28
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	86.07
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	85.91
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	85.59
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	85.46
KOG2444	238	consensus WD40 repeat protein [General function pr	85.16
COG3391	381	Uncharacterized conserved protein [Function unknow	84.85
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	84.32
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	84.1
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	83.51
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	82.91
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	82.81
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	82.55
PF01731	86	Arylesterase: Arylesterase; InterPro: IPR002640 Th	82.49
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	82.05
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	81.41
PF01436	28	NHL: NHL repeat; InterPro: IPR001258 The NHL repea	80.03

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.80  E-value=1e-18  Score=122.83  Aligned_cols=94  Identities=34%  Similarity=0.647  Sum_probs=84.1

Q ss_pred             CCceeeecC-CCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce-------eccCCCcEEEEEecCCcceeeeeeec
Q 036317            1 GPFDIFSDG-GDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL-------PVSHNSTLEASFSQHLSLVALSVLIL   72 (106)
Q Consensus         1 ~~~~~~~~~-~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~-------~~~~~~~~~~~fs~d~~~~~~~~~~~   72 (106)
                      |||..|.+. ....+++.++|||||++|+.++..+.+++.|+.+|.+       ++......+++|+||+          
T Consensus       175 gPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds----------  244 (311)
T KOG1446|consen  175 GPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDS----------  244 (311)
T ss_pred             CCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCC----------
Confidence            799999997 5556999999999999999999999999999999987       2333345789999999          


Q ss_pred             ccEEEEecCCCcEEEEECCCCC-----------CCcEEEeCCCC
Q 036317           73 RSWVLEGSGDGSVYAWSARSGK-----------EPPVIKWAPGS  105 (106)
Q Consensus        73 ~~~i~t~s~d~~i~~wd~~~~~-----------~v~~i~~sp~~  105 (106)
                       +||++|+.||+|.+|++++|+           ++.|++|+|++
T Consensus       245 -~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~  287 (311)
T KOG1446|consen  245 -KFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRY  287 (311)
T ss_pred             -cEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCce
Confidence             999999999999999999998           78999999986

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=99.73  E-value=1.6e-17  Score=119.97  Aligned_cols=87  Identities=21%  Similarity=0.278  Sum_probs=80.7

Q ss_pred             ecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCC
Q 036317            7 SDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGD   82 (106)
Q Consensus         7 ~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d   82 (106)
                      .+.||.+.|-+++|+|+|+.|++++.|.++++||..+...    .+|.+.+.+++|+|||           +.|++|+.|
T Consensus       110 S~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDg-----------k~iASG~~d  178 (480)
T KOG0271|consen  110 SIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDG-----------KKIASGSKD  178 (480)
T ss_pred             ccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCc-----------chhhccccC
Confidence            4568888999999999999999999999999999988776    6788899999999999           999999999


Q ss_pred             CcEEEEECCCCC-----------CCcEEEeCCC
Q 036317           83 GSVYAWSARSGK-----------EPPVIKWAPG  104 (106)
Q Consensus        83 ~~i~~wd~~~~~-----------~v~~i~~sp~  104 (106)
                      |+|++||.++|+           +|.+++|.|-
T Consensus       179 g~I~lwdpktg~~~g~~l~gH~K~It~Lawep~  211 (480)
T KOG0271|consen  179 GSIRLWDPKTGQQIGRALRGHKKWITALAWEPL  211 (480)
T ss_pred             CeEEEecCCCCCcccccccCcccceeEEeeccc
Confidence            999999999987           8999999884

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=99.68  E-value=2.2e-16  Score=114.19  Aligned_cols=87  Identities=21%  Similarity=0.412  Sum_probs=79.8

Q ss_pred             ecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCC
Q 036317            7 SDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGD   82 (106)
Q Consensus         7 ~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d   82 (106)
                      +..+|...|+.+.||||++|+++++.|+.|++||..+|+.    .+|-+.+..++||.|.           +.+++||.|
T Consensus       362 rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDs-----------RLlVS~SkD  430 (480)
T KOG0271|consen  362 RMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADS-----------RLLVSGSKD  430 (480)
T ss_pred             hhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCc-----------cEEEEcCCC
Confidence            3456777999999999999999999999999999999998    5677888899999999           999999999


Q ss_pred             CcEEEEECCCCC----------CCcEEEeCCC
Q 036317           83 GSVYAWSARSGK----------EPPVIKWAPG  104 (106)
Q Consensus        83 ~~i~~wd~~~~~----------~v~~i~~sp~  104 (106)
                      .++++||+++.+          .|-+++|+|+
T Consensus       431 sTLKvw~V~tkKl~~DLpGh~DEVf~vDwspD  462 (480)
T KOG0271|consen  431 STLKVWDVRTKKLKQDLPGHADEVFAVDWSPD  462 (480)
T ss_pred             ceEEEEEeeeeeecccCCCCCceEEEEEecCC
Confidence            999999999877          7889999996

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=99.63  E-value=1.9e-15  Score=105.50  Aligned_cols=88  Identities=19%  Similarity=0.312  Sum_probs=79.1

Q ss_pred             ecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCC
Q 036317            7 SDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGD   82 (106)
Q Consensus         7 ~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d   82 (106)
                      .+.||...|+.+..++||+++++++.|+++++||..+++.    .+|...+++++|++|.           +.|++||.|
T Consensus        58 ~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn-----------~qivSGSrD  126 (315)
T KOG0279|consen   58 RLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDN-----------RQIVSGSRD  126 (315)
T ss_pred             eeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCC-----------ceeecCCCc
Confidence            4567777999999999999999999999999999999876    4577788999999999           999999999


Q ss_pred             CcEEEEECCCCC-----------CCcEEEeCCCC
Q 036317           83 GSVYAWSARSGK-----------EPPVIKWAPGS  105 (106)
Q Consensus        83 ~~i~~wd~~~~~-----------~v~~i~~sp~~  105 (106)
                      .+|++|+...+.           +|.|+.|+|+.
T Consensus       127 kTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~  160 (315)
T KOG0279|consen  127 KTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNE  160 (315)
T ss_pred             ceeeeeeecccEEEEEecCCCcCcEEEEEEcCCC
Confidence            999999987653           89999999984

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=99.62  E-value=6.3e-15  Score=102.91  Aligned_cols=90  Identities=16%  Similarity=0.199  Sum_probs=79.3

Q ss_pred             eeecCCC--CCCeeEEEECCC--CCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEE
Q 036317            5 IFSDGGD--VSDANEVKLSND--GRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWV   76 (106)
Q Consensus         5 ~~~~~~~--~~~v~~v~~spd--g~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i   76 (106)
                      .|++..+  ++.|+++.|+|.  .-++++++.|+++++||+.+.++    .++.+++..+.+||||           ..+
T Consensus       139 k~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDG-----------slc  207 (315)
T KOG0279|consen  139 KYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDG-----------SLC  207 (315)
T ss_pred             EEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCC-----------CEE
Confidence            3445333  568999999998  67889999999999999988877    5677888999999999           999


Q ss_pred             EEecCCCcEEEEECCCCC---------CCcEEEeCCCC
Q 036317           77 LEGSGDGSVYAWSARSGK---------EPPVIKWAPGS  105 (106)
Q Consensus        77 ~t~s~d~~i~~wd~~~~~---------~v~~i~~sp~~  105 (106)
                      ++|++||.+++||+..++         .|+++.|+|+.
T Consensus       208 asGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~fspnr  245 (315)
T KOG0279|consen  208 ASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPNR  245 (315)
T ss_pred             ecCCCCceEEEEEccCCceeEeccCCCeEeeEEecCCc
Confidence            999999999999999988         89999999975

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=99.60  E-value=4.8e-15  Score=113.66  Aligned_cols=85  Identities=14%  Similarity=0.271  Sum_probs=78.2

Q ss_pred             CCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcE
Q 036317           10 GDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSV   85 (106)
Q Consensus        10 ~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i   85 (106)
                      +|-+.|.+++|+|+..|+++++.|+++++||+.+|..    .+|++++.++.|||+|           +++++|++|+.|
T Consensus       533 ghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~G-----------r~LaSg~ed~~I  601 (707)
T KOG0263|consen  533 GHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCG-----------RYLASGDEDGLI  601 (707)
T ss_pred             ccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCC-----------ceEeecccCCcE
Confidence            5567999999999999999999999999999999976    6788999999999999           999999999999


Q ss_pred             EEEECCCCC----------CCcEEEeCCCC
Q 036317           86 YAWSARSGK----------EPPVIKWAPGS  105 (106)
Q Consensus        86 ~~wd~~~~~----------~v~~i~~sp~~  105 (106)
                      ++||+.+|+          .|.++.|+++-
T Consensus       602 ~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg  631 (707)
T KOG0263|consen  602 KIWDLANGSLVKQLKGHTGTIYSLSFSRDG  631 (707)
T ss_pred             EEEEcCCCcchhhhhcccCceeEEEEecCC
Confidence            999999987          78888888753

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.60  E-value=1.2e-14  Score=108.78  Aligned_cols=85  Identities=21%  Similarity=0.390  Sum_probs=76.1

Q ss_pred             CCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcC-CCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCC
Q 036317            9 GGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSF-QGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDG   83 (106)
Q Consensus         9 ~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~-~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~   83 (106)
                      .+|...|+.++|+|||+++++++.|+++++||+. .+..    ..|...+.+++|+|++           +.|++|+.|+
T Consensus       200 ~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g-----------~~i~Sgs~D~  268 (456)
T KOG0266|consen  200 SGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDG-----------NLLVSGSDDG  268 (456)
T ss_pred             cccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCC-----------CEEEEecCCC
Confidence            5667799999999999999999999999999994 4344    5678888999999999           9999999999


Q ss_pred             cEEEEECCCCC----------CCcEEEeCCC
Q 036317           84 SVYAWSARSGK----------EPPVIKWAPG  104 (106)
Q Consensus        84 ~i~~wd~~~~~----------~v~~i~~sp~  104 (106)
                      +|++||+++++          .|.+++|+|+
T Consensus       269 tvriWd~~~~~~~~~l~~hs~~is~~~f~~d  299 (456)
T KOG0266|consen  269 TVRIWDVRTGECVRKLKGHSDGISGLAFSPD  299 (456)
T ss_pred             cEEEEeccCCeEEEeeeccCCceEEEEECCC
Confidence            99999999987          8888888876

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=99.58  E-value=2.5e-15  Score=109.38  Aligned_cols=86  Identities=14%  Similarity=0.247  Sum_probs=79.3

Q ss_pred             cCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCC
Q 036317            8 DGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDG   83 (106)
Q Consensus         8 ~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~   83 (106)
                      +.+|..+|..++|+|+|++|++++.|.+-++||+.++..    .+|...+.+++|.|||           ..++||+-|.
T Consensus       257 l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DG-----------SL~~tGGlD~  325 (459)
T KOG0272|consen  257 LEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDG-----------SLAATGGLDS  325 (459)
T ss_pred             hhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCC-----------ceeeccCccc
Confidence            345567999999999999999999999999999999876    6677888899999999           9999999999


Q ss_pred             cEEEEECCCCC----------CCcEEEeCCC
Q 036317           84 SVYAWSARSGK----------EPPVIKWAPG  104 (106)
Q Consensus        84 ~i~~wd~~~~~----------~v~~i~~sp~  104 (106)
                      .-+|||+++|.          +|-.++|+|+
T Consensus       326 ~~RvWDlRtgr~im~L~gH~k~I~~V~fsPN  356 (459)
T KOG0272|consen  326 LGRVWDLRTGRCIMFLAGHIKEILSVAFSPN  356 (459)
T ss_pred             hhheeecccCcEEEEecccccceeeEeECCC
Confidence            99999999998          8999999996

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.58  E-value=4.3e-14  Score=105.70  Aligned_cols=90  Identities=18%  Similarity=0.341  Sum_probs=80.1

Q ss_pred             eeecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEec
Q 036317            5 IFSDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGS   80 (106)
Q Consensus         5 ~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s   80 (106)
                      ...+.+|...|++++|+|+|+.+++++.|++|++||..+++.    ..+...+..++|++|+           +++++++
T Consensus       239 ~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~-----------~~l~s~s  307 (456)
T KOG0266|consen  239 LKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDG-----------NLLVSAS  307 (456)
T ss_pred             EEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCC-----------CEEEEcC
Confidence            345678889999999999999999999999999999999887    5577788899999999           9999999


Q ss_pred             CCCcEEEEECCCCC--------------CCcEEEeCCCC
Q 036317           81 GDGSVYAWSARSGK--------------EPPVIKWAPGS  105 (106)
Q Consensus        81 ~d~~i~~wd~~~~~--------------~v~~i~~sp~~  105 (106)
                      .|+.|++||+.+++              ++.++.|+|+-
T Consensus       308 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~  346 (456)
T KOG0266|consen  308 YDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNG  346 (456)
T ss_pred             CCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCC
Confidence            99999999999887              46888888763

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=99.57  E-value=4.6e-14  Score=99.28  Aligned_cols=97  Identities=21%  Similarity=0.385  Sum_probs=82.7

Q ss_pred             ecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeee-------------
Q 036317            7 SDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSV-------------   69 (106)
Q Consensus         7 ~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~-------------   69 (106)
                      .+.+|-++|.++.|++|+++++++++||.+.|||..+...    +....+++.|+|+|.|+.+|+..             
T Consensus        50 ~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~  129 (343)
T KOG0286|consen   50 TLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTR  129 (343)
T ss_pred             EecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccc
Confidence            3578888999999999999999999999999999987654    55677889999999999999522             


Q ss_pred             -----------------------eecccEEEEecCCCcEEEEECCCCC----------CCcEEEeCC
Q 036317           70 -----------------------LILRSWVLEGSGDGSVYAWSARSGK----------EPPVIKWAP  103 (106)
Q Consensus        70 -----------------------~~~~~~i~t~s~d~~i~~wd~~~~~----------~v~~i~~sp  103 (106)
                                             +.-...|+|+|.|.++.+||+++|+          .|-+++++|
T Consensus       130 d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p  196 (343)
T KOG0286|consen  130 DAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSP  196 (343)
T ss_pred             cccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCC
Confidence                                   0112569999999999999999998          788888888

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=99.55  E-value=1.8e-14  Score=104.97  Aligned_cols=85  Identities=20%  Similarity=0.262  Sum_probs=77.2

Q ss_pred             CCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCc
Q 036317            9 GGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGS   84 (106)
Q Consensus         9 ~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~   84 (106)
                      +||...|.+++|.|||..+++++.|..-+|||+.+|+.    .+|...+.++.|||+|           ..++|||.|++
T Consensus       300 EGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNG-----------y~lATgs~Dnt  368 (459)
T KOG0272|consen  300 EGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNG-----------YHLATGSSDNT  368 (459)
T ss_pred             cccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCc-----------eEEeecCCCCc
Confidence            57777999999999999999999999999999999987    5677888999999999           99999999999


Q ss_pred             EEEEECCCCC----------CCcEEEeCCC
Q 036317           85 VYAWSARSGK----------EPPVIKWAPG  104 (106)
Q Consensus        85 i~~wd~~~~~----------~v~~i~~sp~  104 (106)
                      ++|||++.-+          .|..++|+|.
T Consensus       369 ~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~  398 (459)
T KOG0272|consen  369 CKVWDLRMRSELYTIPAHSNLVSQVKYSPQ  398 (459)
T ss_pred             EEEeeecccccceecccccchhhheEeccc
Confidence            9999999665          7788888884

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=99.55  E-value=4.4e-14  Score=108.42  Aligned_cols=101  Identities=16%  Similarity=0.197  Sum_probs=79.6

Q ss_pred             eeeecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCccee-------------
Q 036317            4 DIFSDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVA-------------   66 (106)
Q Consensus         4 ~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~-------------   66 (106)
                      ..-.+-||.++|..+.|+||.++|++++.|.++++|...+...    .+|..++..+.|+|-|=|+|             
T Consensus       443 ~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~  522 (707)
T KOG0263|consen  443 TSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWST  522 (707)
T ss_pred             eeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeec
Confidence            3445678889999999999999999999999999999887665    56667778888888886666             


Q ss_pred             ------------------eeeeecccEEEEecCCCcEEEEECCCCC----------CCcEEEeCCC
Q 036317           67 ------------------LSVLILRSWVLEGSGDGSVYAWSARSGK----------EPPVIKWAPG  104 (106)
Q Consensus        67 ------------------~~~~~~~~~i~t~s~d~~i~~wd~~~~~----------~v~~i~~sp~  104 (106)
                                        +.+=++..|++|||.|.+|++||+.+|.          +|.+++|||.
T Consensus       523 d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~  588 (707)
T KOG0263|consen  523 DHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPC  588 (707)
T ss_pred             ccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCC
Confidence                              2444555778888888888888887776          7777777773

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.55  E-value=2.6e-14  Score=106.86  Aligned_cols=81  Identities=20%  Similarity=0.341  Sum_probs=74.6

Q ss_pred             CCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEE
Q 036317           12 VSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYA   87 (106)
Q Consensus        12 ~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~   87 (106)
                      .+.|+.++|||||++||+.++|+.++|+|-.+.++    +...+..+.++|||||           +||++|++|.-|.|
T Consensus       290 ~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDG-----------KyIvtGGEDDLVtV  358 (636)
T KOG2394|consen  290 EGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDG-----------KYIVTGGEDDLVTV  358 (636)
T ss_pred             cccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCc-----------cEEEecCCcceEEE
Confidence            34899999999999999999999999999988877    4566778899999999           99999999999999


Q ss_pred             EECCCCC----------CCcEEEeCC
Q 036317           88 WSARSGK----------EPPVIKWAP  103 (106)
Q Consensus        88 wd~~~~~----------~v~~i~~sp  103 (106)
                      |.+..++          +|..++|.|
T Consensus       359 wSf~erRVVARGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  359 WSFEERRVVARGQGHKSWVSVVAFDP  384 (636)
T ss_pred             EEeccceEEEeccccccceeeEeecc
Confidence            9999887          999999998

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.53  E-value=9.4e-14  Score=103.56  Aligned_cols=79  Identities=19%  Similarity=0.219  Sum_probs=70.3

Q ss_pred             CCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce-------eccCCCcEEEEEecCCcceeeeeeecccEEEEecCC
Q 036317           10 GDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL-------PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGD   82 (106)
Q Consensus        10 ~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~-------~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d   82 (106)
                      .|..-|+++.|||||+++++++.|+++.+||..+|+.       ..|++.+.+++|+||+           +.++|.|.|
T Consensus       188 ~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs-----------~~~~T~SaD  256 (603)
T KOG0318|consen  188 EHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDS-----------TQFLTVSAD  256 (603)
T ss_pred             ccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCC-----------ceEEEecCC
Confidence            3445899999999999999999999999999999987       3578899999999999           999999999


Q ss_pred             CcEEEEECCCCCCCcEE
Q 036317           83 GSVYAWSARSGKEPPVI   99 (106)
Q Consensus        83 ~~i~~wd~~~~~~v~~i   99 (106)
                      .+++|||+.+.+.++.+
T Consensus       257 kt~KIWdVs~~slv~t~  273 (603)
T KOG0318|consen  257 KTIKIWDVSTNSLVSTW  273 (603)
T ss_pred             ceEEEEEeeccceEEEe
Confidence            99999999998744433

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.52  E-value=2.5e-14  Score=102.34  Aligned_cols=85  Identities=24%  Similarity=0.455  Sum_probs=75.3

Q ss_pred             CCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce------------eccCCCcEEEEEecCCcceeeeeeecccEEE
Q 036317           10 GDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL------------PVSHNSTLEASFSQHLSLVALSVLILRSWVL   77 (106)
Q Consensus        10 ~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~------------~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~   77 (106)
                      +.++-+.+..|||||+|+++++.||.|.+||..+|++            ......+.+++||.|.           ..++
T Consensus       211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDs-----------EMlA  279 (508)
T KOG0275|consen  211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDS-----------EMLA  279 (508)
T ss_pred             ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccH-----------HHhh
Confidence            4466788999999999999999999999999999987            2244567789999999           9999


Q ss_pred             EecCCCcEEEEECCCCC-----------CCcEEEeCCCC
Q 036317           78 EGSGDGSVYAWSARSGK-----------EPPVIKWAPGS  105 (106)
Q Consensus        78 t~s~d~~i~~wd~~~~~-----------~v~~i~~sp~~  105 (106)
                      +|+.||.|++|.+++|+           .|.|++||.+.
T Consensus       280 sGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~  318 (508)
T KOG0275|consen  280 SGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDN  318 (508)
T ss_pred             ccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCc
Confidence            99999999999999998           89999998763

>PTZ00421 coronin; Provisional

Probab=99.51  E-value=3.1e-13  Score=102.12  Aligned_cols=87  Identities=16%  Similarity=0.186  Sum_probs=73.9

Q ss_pred             cCCCCCCeeEEEECC-CCCeEEEEeCCCeEEEEEcCCCce-----------eccCCCcEEEEEecCCcceeeeeeecccE
Q 036317            8 DGGDVSDANEVKLSN-DGRLMLLTTLEGHIHVLHSFQGTL-----------PVSHNSTLEASFSQHLSLVALSVLILRSW   75 (106)
Q Consensus         8 ~~~~~~~v~~v~~sp-dg~~l~~~~~~~~i~l~d~~~~~~-----------~~~~~~~~~~~fs~d~~~~~~~~~~~~~~   75 (106)
                      +.+|.+.|.+++|+| +++++++++.|++|++||+.++..           ..+...+..+.|+|++          ..+
T Consensus        71 l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~----------~~i  140 (493)
T PTZ00421         71 LLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSA----------MNV  140 (493)
T ss_pred             EeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCC----------CCE
Confidence            567888999999999 899999999999999999876421           3456677889999985          158


Q ss_pred             EEEecCCCcEEEEECCCCC----------CCcEEEeCCC
Q 036317           76 VLEGSGDGSVYAWSARSGK----------EPPVIKWAPG  104 (106)
Q Consensus        76 i~t~s~d~~i~~wd~~~~~----------~v~~i~~sp~  104 (106)
                      +++++.|++|++||+++++          .|.+++|+|+
T Consensus       141 LaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spd  179 (493)
T PTZ00421        141 LASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLD  179 (493)
T ss_pred             EEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECC
Confidence            9999999999999999876          6889999886

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.50  E-value=1.3e-13  Score=97.18  Aligned_cols=79  Identities=18%  Similarity=0.201  Sum_probs=71.1

Q ss_pred             ecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce-----eccCCCcEEEEEecCCcceeeeeeecccEEEEecC
Q 036317            7 SDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL-----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSG   81 (106)
Q Consensus         7 ~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~-----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~   81 (106)
                      .+.+|+++|..++|+|+|.++++++.|..|.+|+......     ..+.+.++.+.|.+|+           ..|++++.
T Consensus        42 ~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~-----------s~i~S~gt  110 (338)
T KOG0265|consen   42 LLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDG-----------SHILSCGT  110 (338)
T ss_pred             hcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCC-----------CEEEEecC
Confidence            3568889999999999999999999999999999755433     6788899999999999           99999999


Q ss_pred             CCcEEEEECCCCCCC
Q 036317           82 DGSVYAWSARSGKEP   96 (106)
Q Consensus        82 d~~i~~wd~~~~~~v   96 (106)
                      |.+++.||+++|+.+
T Consensus       111 Dk~v~~wD~~tG~~~  125 (338)
T KOG0265|consen  111 DKTVRGWDAETGKRI  125 (338)
T ss_pred             CceEEEEecccceee
Confidence            999999999999833

>PTZ00420 coronin; Provisional

Probab=99.48  E-value=9.9e-13  Score=100.69  Aligned_cols=88  Identities=13%  Similarity=0.154  Sum_probs=73.8

Q ss_pred             eecCCCCCCeeEEEECCC-CCeEEEEeCCCeEEEEEcCCCc------------eeccCCCcEEEEEecCCcceeeeeeec
Q 036317            6 FSDGGDVSDANEVKLSND-GRLMLLTTLEGHIHVLHSFQGT------------LPVSHNSTLEASFSQHLSLVALSVLIL   72 (106)
Q Consensus         6 ~~~~~~~~~v~~v~~spd-g~~l~~~~~~~~i~l~d~~~~~------------~~~~~~~~~~~~fs~d~~~~~~~~~~~   72 (106)
                      ..+.+|.+.|.+++|+|+ ++++++++.|+.|++||+.++.            +..|...+..+.|+|++          
T Consensus        68 ~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g----------  137 (568)
T PTZ00420         68 IKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMN----------  137 (568)
T ss_pred             EEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCC----------
Confidence            446778889999999997 7899999999999999987542            13456677889999998          


Q ss_pred             ccEE-EEecCCCcEEEEECCCCC---------CCcEEEeCCC
Q 036317           73 RSWV-LEGSGDGSVYAWSARSGK---------EPPVIKWAPG  104 (106)
Q Consensus        73 ~~~i-~t~s~d~~i~~wd~~~~~---------~v~~i~~sp~  104 (106)
                       ..+ ++++.|++|++||+++++         .|.+++|+|+
T Consensus       138 -~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~Slswspd  178 (568)
T PTZ00420        138 -YYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIK  178 (568)
T ss_pred             -CeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCC
Confidence             765 689999999999999886         6788999885

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.47  E-value=2.6e-13  Score=97.77  Aligned_cols=92  Identities=13%  Similarity=0.253  Sum_probs=81.4

Q ss_pred             Cceeeec-CCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEE
Q 036317            2 PFDIFSD-GGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWV   76 (106)
Q Consensus         2 ~~~~~~~-~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i   76 (106)
                      |+..+.+ .+|-+.|+++++.|-.+++++++.|++++|||+.+|++    .++...+..+.+|+-.           .|+
T Consensus       140 pwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rH-----------pYl  208 (460)
T KOG0285|consen  140 PWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRH-----------PYL  208 (460)
T ss_pred             cceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccC-----------ceE
Confidence            3445555 57778999999999999999999999999999999998    5566777789999999           999


Q ss_pred             EEecCCCcEEEEECCCCC----------CCcEEEeCCC
Q 036317           77 LEGSGDGSVYAWSARSGK----------EPPVIKWAPG  104 (106)
Q Consensus        77 ~t~s~d~~i~~wd~~~~~----------~v~~i~~sp~  104 (106)
                      .++++|+.|+.||++..+          .|.|++.+|.
T Consensus       209 Fs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPT  246 (460)
T KOG0285|consen  209 FSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPT  246 (460)
T ss_pred             EEecCCCeeEEEechhhhhHHHhccccceeEEEecccc
Confidence            999999999999999988          7888888875

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=99.45  E-value=5.5e-13  Score=92.38  Aligned_cols=75  Identities=15%  Similarity=0.212  Sum_probs=67.1

Q ss_pred             CCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCC-ce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCC
Q 036317            9 GGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQG-TL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDG   83 (106)
Q Consensus         9 ~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~-~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~   83 (106)
                      ..|.+-+..+-+|||++||++++.|++++||+..+. +.    .++...+..|.||.||           +||+||+.|+
T Consensus       212 ~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg-----------~YlvTassd~  280 (311)
T KOG0315|consen  212 QAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADG-----------EYLVTASSDH  280 (311)
T ss_pred             ecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCc-----------cEEEecCCCC
Confidence            445667889999999999999999999999999887 22    4566788899999999           9999999999


Q ss_pred             cEEEEECCCCC
Q 036317           84 SVYAWSARSGK   94 (106)
Q Consensus        84 ~i~~wd~~~~~   94 (106)
                      .+++||++.++
T Consensus       281 ~~rlW~~~~~k  291 (311)
T KOG0315|consen  281 TARLWDLSAGK  291 (311)
T ss_pred             ceeecccccCc
Confidence            99999999998

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.45  E-value=1.6e-12  Score=90.80  Aligned_cols=84  Identities=18%  Similarity=0.342  Sum_probs=75.4

Q ss_pred             CCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce------eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCC
Q 036317           10 GDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL------PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDG   83 (106)
Q Consensus        10 ~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~------~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~   83 (106)
                      +|+..|++++|+|.|++|++++.|.++.||.-.++++      .+|.+.+.+++|+++|           .++||++.|+
T Consensus        59 ~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG-----------~~LATCSRDK  127 (312)
T KOG0645|consen   59 GHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASG-----------NYLATCSRDK  127 (312)
T ss_pred             cchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCC-----------CEEEEeeCCC
Confidence            5667899999999999999999999999999877766      5678888999999999           9999999999


Q ss_pred             cEEEEECCCCC-------------CCcEEEeCCC
Q 036317           84 SVYAWSARSGK-------------EPPVIKWAPG  104 (106)
Q Consensus        84 ~i~~wd~~~~~-------------~v~~i~~sp~  104 (106)
                      +|-+|++..+.             .|.-+.|+|.
T Consensus       128 SVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt  161 (312)
T KOG0645|consen  128 SVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPT  161 (312)
T ss_pred             eEEEEEecCCCcEEEEeeeccccccccEEEEcCC
Confidence            99999998654             7888899984

>PTZ00421 coronin; Provisional

Probab=99.44  E-value=2.7e-12  Score=97.03  Aligned_cols=77  Identities=12%  Similarity=0.113  Sum_probs=67.6

Q ss_pred             ecCCCCCCeeEEEECCCC-CeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecC
Q 036317            7 SDGGDVSDANEVKLSNDG-RLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSG   81 (106)
Q Consensus         7 ~~~~~~~~v~~v~~spdg-~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~   81 (106)
                      .+.+|...|..++|+|++ +++++++.|++|+|||+.+++.    ..+...+..++|+|++           ..+++++.
T Consensus       120 ~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG-----------~lLatgs~  188 (493)
T PTZ00421        120 HLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDG-----------SLLCTTSK  188 (493)
T ss_pred             EecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCC-----------CEEEEecC
Confidence            345677799999999986 6889999999999999998876    3456678889999999           99999999


Q ss_pred             CCcEEEEECCCCC
Q 036317           82 DGSVYAWSARSGK   94 (106)
Q Consensus        82 d~~i~~wd~~~~~   94 (106)
                      |++|++||+++++
T Consensus       189 Dg~IrIwD~rsg~  201 (493)
T PTZ00421        189 DKKLNIIDPRDGT  201 (493)
T ss_pred             CCEEEEEECCCCc
Confidence            9999999999987

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.44  E-value=7.6e-13  Score=92.08  Aligned_cols=89  Identities=15%  Similarity=0.125  Sum_probs=74.5

Q ss_pred             ecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCC
Q 036317            7 SDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGD   82 (106)
Q Consensus         7 ~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d   82 (106)
                      .+..|....-+++|+|+|+|+|+++.|-.+-|||+..--.    +...-++..++||.||           ++|+++|+|
T Consensus       184 si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg-----------~~lASaSED  252 (313)
T KOG1407|consen  184 SIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDG-----------RMLASASED  252 (313)
T ss_pred             ccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCc-----------ceeeccCcc
Confidence            4456677888999999999999999999999999865433    3333345679999999           999999999


Q ss_pred             CcEEEEECCCCC---------CCcEEEeCCCCC
Q 036317           83 GSVYAWSARSGK---------EPPVIKWAPGSL  106 (106)
Q Consensus        83 ~~i~~wd~~~~~---------~v~~i~~sp~~~  106 (106)
                      ..|-|=++++|.         +...++|+|++.
T Consensus       253 h~IDIA~vetGd~~~eI~~~~~t~tVAWHPk~~  285 (313)
T KOG1407|consen  253 HFIDIAEVETGDRVWEIPCEGPTFTVAWHPKRP  285 (313)
T ss_pred             ceEEeEecccCCeEEEeeccCCceeEEecCCCc
Confidence            999999999987         778899999863

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.43  E-value=1.4e-12  Score=100.60  Aligned_cols=76  Identities=21%  Similarity=0.344  Sum_probs=65.1

Q ss_pred             cCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCC
Q 036317            8 DGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDG   83 (106)
Q Consensus         8 ~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~   83 (106)
                      -.+|-.+++++++||||+++++++.|+.|+|||..+|..    ..|...++.+.|+..|           +.+++.|-||
T Consensus       346 QQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g-----------~~llssSLDG  414 (893)
T KOG0291|consen  346 QQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARG-----------NVLLSSSLDG  414 (893)
T ss_pred             ccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecC-----------CEEEEeecCC
Confidence            345667999999999999999999999999999999876    5577788899999999           8888888888


Q ss_pred             cEEEEECCCCC
Q 036317           84 SVYAWSARSGK   94 (106)
Q Consensus        84 ~i~~wd~~~~~   94 (106)
                      +|+.||+...+
T Consensus       415 tVRAwDlkRYr  425 (893)
T KOG0291|consen  415 TVRAWDLKRYR  425 (893)
T ss_pred             eEEeeeecccc
Confidence            88888877654

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.43  E-value=2.4e-12  Score=90.92  Aligned_cols=90  Identities=18%  Similarity=0.327  Sum_probs=73.8

Q ss_pred             ceeeecCCCCC-CeeEEEECCCC-CeEEEEeCCCeEEEEEcCC-Cce-----eccCCCcEEEEEecCCcceeeeeeeccc
Q 036317            3 FDIFSDGGDVS-DANEVKLSNDG-RLMLLTTLEGHIHVLHSFQ-GTL-----PVSHNSTLEASFSQHLSLVALSVLILRS   74 (106)
Q Consensus         3 ~~~~~~~~~~~-~v~~v~~spdg-~~l~~~~~~~~i~l~d~~~-~~~-----~~~~~~~~~~~fs~d~~~~~~~~~~~~~   74 (106)
                      -+.|++..... .|..++|||.. ..+++++.|++|++|+++. |..     ..+.+++..++|+.||           .
T Consensus        17 ~kd~ev~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsddg-----------s   85 (347)
T KOG0647|consen   17 NKDYEVPNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDG-----------S   85 (347)
T ss_pred             ccceecCCCcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCC-----------c
Confidence            35567765554 89999999954 4455889999999999886 444     4567788999999999           9


Q ss_pred             EEEEecCCCcEEEEECCCCC---------CCcEEEeCC
Q 036317           75 WVLEGSGDGSVYAWSARSGK---------EPPVIKWAP  103 (106)
Q Consensus        75 ~i~t~s~d~~i~~wd~~~~~---------~v~~i~~sp  103 (106)
                      .+++|+.|+++++||+++++         +|+++.|=+
T Consensus        86 kVf~g~~Dk~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~  123 (347)
T KOG0647|consen   86 KVFSGGCDKQAKLWDLASGQVSQVAAHDAPVKTCHWVP  123 (347)
T ss_pred             eEEeeccCCceEEEEccCCCeeeeeecccceeEEEEec
Confidence            99999999999999999998         777777743

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=99.42  E-value=1.7e-12  Score=89.91  Aligned_cols=88  Identities=17%  Similarity=0.241  Sum_probs=72.7

Q ss_pred             eeecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce------eccCCCcEEEEEecCCcceeeeeeecccEEEE
Q 036317            5 IFSDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL------PVSHNSTLEASFSQHLSLVALSVLILRSWVLE   78 (106)
Q Consensus         5 ~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~------~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t   78 (106)
                      ..++.-..+.|+.++++||++.|++++ ...|++||+.+++.      ..+.+-++.+.|..||           ++..|
T Consensus        33 ~rTiqh~dsqVNrLeiTpdk~~LAaa~-~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dg-----------rWMyT  100 (311)
T KOG0315|consen   33 SRTIQHPDSQVNRLEITPDKKDLAAAG-NQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDG-----------RWMYT  100 (311)
T ss_pred             EEEEecCccceeeEEEcCCcchhhhcc-CCeeEEEEccCCCCCceeEEeccCCceEEEEEeecC-----------eEEEe
Confidence            344433456899999999999777766 56699999998876      3455678899999999           99999


Q ss_pred             ecCCCcEEEEECCCCC---------CCcEEEeCCC
Q 036317           79 GSGDGSVYAWSARSGK---------EPPVIKWAPG  104 (106)
Q Consensus        79 ~s~d~~i~~wd~~~~~---------~v~~i~~sp~  104 (106)
                      |++||+++|||++...         +|+++..+|+
T Consensus       101 gseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpn  135 (311)
T KOG0315|consen  101 GSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPN  135 (311)
T ss_pred             cCCCceEEEEeccCcccchhccCCCCcceEEecCC
Confidence            9999999999999855         8888888875

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=99.41  E-value=2.7e-12  Score=90.46  Aligned_cols=85  Identities=16%  Similarity=0.227  Sum_probs=77.7

Q ss_pred             cCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEec-CCcceeeeeeecccEEEEecCC
Q 036317            8 DGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQ-HLSLVALSVLILRSWVLEGSGD   82 (106)
Q Consensus         8 ~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~-d~~~~~~~~~~~~~~i~t~s~d   82 (106)
                      +.+|.+-++++.|-+|+. +++++.|.+..+||+++|+.    .+|.+.+.+++++| ++           +.+++|+.|
T Consensus       141 l~gHtgylScC~f~dD~~-ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~-----------ntFvSg~cD  208 (343)
T KOG0286|consen  141 LAGHTGYLSCCRFLDDNH-ILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDG-----------NTFVSGGCD  208 (343)
T ss_pred             ecCccceeEEEEEcCCCc-eEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCC-----------CeEEecccc
Confidence            567788899999999877 89999999999999999987    56778899999999 89           999999999


Q ss_pred             CcEEEEECCCCC----------CCcEEEeCCC
Q 036317           83 GSVYAWSARSGK----------EPPVIKWAPG  104 (106)
Q Consensus        83 ~~i~~wd~~~~~----------~v~~i~~sp~  104 (106)
                      ++.++||++++.          .|+.++|.|+
T Consensus       209 ~~aklWD~R~~~c~qtF~ghesDINsv~ffP~  240 (343)
T KOG0286|consen  209 KSAKLWDVRSGQCVQTFEGHESDINSVRFFPS  240 (343)
T ss_pred             cceeeeeccCcceeEeecccccccceEEEccC
Confidence            999999999987          8999999986

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.40  E-value=2.9e-13  Score=99.90  Aligned_cols=90  Identities=18%  Similarity=0.336  Sum_probs=80.4

Q ss_pred             eeecCCCCCCeeEEEECC-CCCeEEEEeCCCeEEEEEcCC-Cce----eccCCCcEEEEEecCCcceeeeeeecccEEEE
Q 036317            5 IFSDGGDVSDANEVKLSN-DGRLMLLTTLEGHIHVLHSFQ-GTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLE   78 (106)
Q Consensus         5 ~~~~~~~~~~v~~v~~sp-dg~~l~~~~~~~~i~l~d~~~-~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t   78 (106)
                      ++...+|...|+++.|-| .+..++++++|+.|+|||+.+ +++    .+|...+.+++|+++|           +.+++
T Consensus       207 ~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g-----------~~fLS  275 (503)
T KOG0282|consen  207 SHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCG-----------TSFLS  275 (503)
T ss_pred             eeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccC-----------Ceeee
Confidence            466778889999999999 889899999999999999987 444    5677778889999999           99999


Q ss_pred             ecCCCcEEEEECCCCC---------CCcEEEeCCCC
Q 036317           79 GSGDGSVYAWSARSGK---------EPPVIKWAPGS  105 (106)
Q Consensus        79 ~s~d~~i~~wd~~~~~---------~v~~i~~sp~~  105 (106)
                      +|.|+.+++||+++|+         .+.|++|+|+-
T Consensus       276 ~sfD~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~  311 (503)
T KOG0282|consen  276 ASFDRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDN  311 (503)
T ss_pred             eecceeeeeeccccceEEEEEecCCCceeeecCCCC
Confidence            9999999999999998         88999999973

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.40  E-value=2.2e-12  Score=91.86  Aligned_cols=80  Identities=16%  Similarity=0.172  Sum_probs=69.8

Q ss_pred             CeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEEE
Q 036317           14 DANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWS   89 (106)
Q Consensus        14 ~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd   89 (106)
                      ...++.|++-|.++|+++.+|.+.|||..|...    ..|..++++++||+||           +.++|+|.|..|.+||
T Consensus        25 ~a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dg-----------r~LltsS~D~si~lwD   93 (405)
T KOG1273|consen   25 LAECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDG-----------RKLLTSSRDWSIKLWD   93 (405)
T ss_pred             ccceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCC-----------CEeeeecCCceeEEEe
Confidence            478999999999999999999999999998876    4466678899999999           9999999999999999


Q ss_pred             CCCCC---------CCcEEEeCCC
Q 036317           90 ARSGK---------EPPVIKWAPG  104 (106)
Q Consensus        90 ~~~~~---------~v~~i~~sp~  104 (106)
                      +..|.         +|....|+|.
T Consensus        94 l~~gs~l~rirf~spv~~~q~hp~  117 (405)
T KOG1273|consen   94 LLKGSPLKRIRFDSPVWGAQWHPR  117 (405)
T ss_pred             ccCCCceeEEEccCccceeeeccc
Confidence            99998         5555555553

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.39  E-value=1.9e-12  Score=94.66  Aligned_cols=92  Identities=11%  Similarity=0.193  Sum_probs=78.0

Q ss_pred             Cceeeec-CCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCC-Cce------eccCCCcEEEEEecCCcceeeeeeecc
Q 036317            2 PFDIFSD-GGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQ-GTL------PVSHNSTLEASFSQHLSLVALSVLILR   73 (106)
Q Consensus         2 ~~~~~~~-~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~-~~~------~~~~~~~~~~~fs~d~~~~~~~~~~~~   73 (106)
                      |++.+++ ..|..+|.-+.||++|+|+|+++.|.+.-+|++.. .++      .++..++..+.||||.           
T Consensus       213 p~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDd-----------  281 (519)
T KOG0293|consen  213 PSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDD-----------  281 (519)
T ss_pred             CchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCC-----------
Confidence            4555665 45667999999999999999999999999998653 332      4577788889999999           


Q ss_pred             cEEEEecCCCcEEEEECCCCC-----------CCcEEEeCCC
Q 036317           74 SWVLEGSGDGSVYAWSARSGK-----------EPPVIKWAPG  104 (106)
Q Consensus        74 ~~i~t~s~d~~i~~wd~~~~~-----------~v~~i~~sp~  104 (106)
                      +++++++.|..+.+||+.+|.           .+.+.+|.|+
T Consensus       282 ryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pD  323 (519)
T KOG0293|consen  282 RYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPD  323 (519)
T ss_pred             CeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccC
Confidence            999999999999999999997           6778888886

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.39  E-value=9.3e-12  Score=83.51  Aligned_cols=86  Identities=21%  Similarity=0.349  Sum_probs=73.4

Q ss_pred             cCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCC
Q 036317            8 DGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDG   83 (106)
Q Consensus         8 ~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~   83 (106)
                      +.+|.++|.+++|+|+++++++++.++.+.+||..+++.    ..+...+..+.|+|++           +++++++.|+
T Consensus         5 ~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----------~~l~~~~~~~   73 (289)
T cd00200           5 LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADG-----------TYLASGSSDK   73 (289)
T ss_pred             hcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCC-----------CEEEEEcCCC
Confidence            346788999999999999999999999999999987754    3344555689999999           9999999999


Q ss_pred             cEEEEECCCCC----------CCcEEEeCCC
Q 036317           84 SVYAWSARSGK----------EPPVIKWAPG  104 (106)
Q Consensus        84 ~i~~wd~~~~~----------~v~~i~~sp~  104 (106)
                      .|++||+++++          .+.++.|+|+
T Consensus        74 ~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~  104 (289)
T cd00200          74 TIRLWDLETGECVRTLTGHTSYVSSVAFSPD  104 (289)
T ss_pred             eEEEEEcCcccceEEEeccCCcEEEEEEcCC
Confidence            99999999864          5778888874

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.39  E-value=4.1e-12  Score=92.60  Aligned_cols=93  Identities=19%  Similarity=0.306  Sum_probs=65.0

Q ss_pred             CCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCccee---------------------
Q 036317           12 VSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVA---------------------   66 (106)
Q Consensus        12 ~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~---------------------   66 (106)
                      +..|+.|.|.|+|+.|++++..|++.||+..+...    ..|...+..+.|++++.|++                     
T Consensus        96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~  175 (464)
T KOG0284|consen   96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKII  175 (464)
T ss_pred             ccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHHh
Confidence            34677777777777777777777777777755443    33444455667777776655                     


Q ss_pred             ----------eeeeecccEEEEecCCCcEEEEECCCCC----------CCcEEEeCCC
Q 036317           67 ----------LSVLILRSWVLEGSGDGSVYAWSARSGK----------EPPVIKWAPG  104 (106)
Q Consensus        67 ----------~~~~~~~~~i~t~s~d~~i~~wd~~~~~----------~v~~i~~sp~  104 (106)
                                +++.+....++|+|+|++|+|||....+          .|++++|+|.
T Consensus       176 ~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~  233 (464)
T KOG0284|consen  176 QAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPT  233 (464)
T ss_pred             hHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCc
Confidence                      2334444778888888888888887665          7888888885

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.38  E-value=8e-12  Score=87.33  Aligned_cols=98  Identities=16%  Similarity=0.214  Sum_probs=80.6

Q ss_pred             ecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce--ec-cCCCcEEEEEecCCcceeee---------------
Q 036317            7 SDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL--PV-SHNSTLEASFSQHLSLVALS---------------   68 (106)
Q Consensus         7 ~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~--~~-~~~~~~~~~fs~d~~~~~~~---------------   68 (106)
                      +..||.+.|.+++.+-+.+++++++.|.+++|||+.+|++  .- ...++..+.|+++|+++++.               
T Consensus        47 ty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fd  126 (327)
T KOG0643|consen   47 TYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFD  126 (327)
T ss_pred             eecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEE
Confidence            3467889999999999999999999999999999999998  22 23345678889888888731               


Q ss_pred             ----------------------------eeecccEEEEecCCCcEEEEECCCCC-----------CCcEEEeCCC
Q 036317           69 ----------------------------VLILRSWVLEGSGDGSVYAWSARSGK-----------EPPVIKWAPG  104 (106)
Q Consensus        69 ----------------------------~~~~~~~i~t~s~d~~i~~wd~~~~~-----------~v~~i~~sp~  104 (106)
                                                  |-.+.++|++|.+||.|.+||+++|+           .|+.++++|+
T Consensus       127 i~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d  201 (327)
T KOG0643|consen  127 IRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRD  201 (327)
T ss_pred             ccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCC
Confidence                                        12333789999999999999999986           7888888886

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.37  E-value=2.4e-12  Score=99.38  Aligned_cols=83  Identities=19%  Similarity=0.302  Sum_probs=66.5

Q ss_pred             CCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce-------------------------------------------
Q 036317           10 GDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL-------------------------------------------   46 (106)
Q Consensus        10 ~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~-------------------------------------------   46 (106)
                      .|.+.|.+++||+||+|||+++.|+.|+||.+...+.                                           
T Consensus       265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~  344 (712)
T KOG0283|consen  265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ  344 (712)
T ss_pred             ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence            6778999999999999999999999999998765100                                           


Q ss_pred             ---------------------eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEEECCCCC---------CC
Q 036317           47 ---------------------PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSARSGK---------EP   96 (106)
Q Consensus        47 ---------------------~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd~~~~~---------~v   96 (106)
                                           .+|.+.+++++||.+            .+|+++|-|.+|+||++...+         -|
T Consensus       345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn------------~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfV  412 (712)
T KOG0283|consen  345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN------------NFLLSSSMDKTVRLWHPGRKECLKVFSHNDFV  412 (712)
T ss_pred             CccccCCCccccccccchhhhhccchhheecccccC------------CeeEeccccccEEeecCCCcceeeEEecCCee
Confidence                                 122333444555544            699999999999999999766         89


Q ss_pred             cEEEeCCC
Q 036317           97 PVIKWAPG  104 (106)
Q Consensus        97 ~~i~~sp~  104 (106)
                      .||+|+|.
T Consensus       413 TcVaFnPv  420 (712)
T KOG0283|consen  413 TCVAFNPV  420 (712)
T ss_pred             EEEEeccc
Confidence            99999995

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.34  E-value=1.7e-11  Score=87.53  Aligned_cols=91  Identities=16%  Similarity=0.250  Sum_probs=70.9

Q ss_pred             ceeeecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce--------eccCCCcEEEEEecCCcceeeee-----
Q 036317            3 FDIFSDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL--------PVSHNSTLEASFSQHLSLVALSV-----   69 (106)
Q Consensus         3 ~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~--------~~~~~~~~~~~fs~d~~~~~~~~-----   69 (106)
                      .+.-.+.+|.+.|++++||.||+++++.+.|+.|++|+..+.+.        ....+.++.+.|+||-+-+...+     
T Consensus        77 l~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~  156 (420)
T KOG2096|consen   77 LNVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNK  156 (420)
T ss_pred             hhhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCE
Confidence            34455678889999999999999999999999999999987654        12334567789999855544211     


Q ss_pred             ---------------------------------------eecccEEEEecCCCcEEEEECCCCC
Q 036317           70 ---------------------------------------LILRSWVLEGSGDGSVYAWSARSGK   94 (106)
Q Consensus        70 ---------------------------------------~~~~~~i~t~s~d~~i~~wd~~~~~   94 (106)
                                                             ....++|++++.|..|.+|+++ |+
T Consensus       157 l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq  219 (420)
T KOG2096|consen  157 LCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQ  219 (420)
T ss_pred             EEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cc
Confidence                                                   2223789999999999999999 76

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.34  E-value=3.5e-12  Score=92.96  Aligned_cols=85  Identities=21%  Similarity=0.347  Sum_probs=77.1

Q ss_pred             CCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCc
Q 036317            9 GGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGS   84 (106)
Q Consensus         9 ~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~   84 (106)
                      .+|.-.|.+++|+|..-.+++++.|+.|++||.++|..    ..++..++.+.|.|++           .+++|+|+|..
T Consensus       219 ~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~-----------N~Llt~skD~~  287 (464)
T KOG0284|consen  219 RGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNG-----------NWLLTGSKDQS  287 (464)
T ss_pred             ccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCC-----------CeeEEccCCce
Confidence            56666999999999999999999999999999999987    5677888999999999           99999999999


Q ss_pred             EEEEECCCCC----------CCcEEEeCCC
Q 036317           85 VYAWSARSGK----------EPPVIKWAPG  104 (106)
Q Consensus        85 i~~wd~~~~~----------~v~~i~~sp~  104 (106)
                      ++++|+++.+          .+.++.|+|-
T Consensus       288 ~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~  317 (464)
T KOG0284|consen  288 CKVFDIRTMKELFTYRGHKKDVTSLTWHPL  317 (464)
T ss_pred             EEEEehhHhHHHHHhhcchhhheeeccccc
Confidence            9999999655          8899999884

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.33  E-value=8.3e-12  Score=86.13  Aligned_cols=82  Identities=26%  Similarity=0.397  Sum_probs=70.5

Q ss_pred             CCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCC--CcEEEEEecCCcceeeeeeecccEEEEecCCCcEE
Q 036317           13 SDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHN--STLEASFSQHLSLVALSVLILRSWVLEGSGDGSVY   86 (106)
Q Consensus        13 ~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~--~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~   86 (106)
                      .+|+++.||+||++.++++.++++++.|-.+|++    .++.+  +-..|++....           ..+++||+||.|+
T Consensus       184 ~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsd-----------thV~sgSEDG~Vy  252 (307)
T KOG0316|consen  184 HPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSD-----------THVFSGSEDGKVY  252 (307)
T ss_pred             CcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccc-----------eeEEeccCCceEE
Confidence            4899999999999999999999999999999998    44443  33568889888           9999999999999


Q ss_pred             EEECCCCC-----------CCcEEEeCCCC
Q 036317           87 AWSARSGK-----------EPPVIKWAPGS  105 (106)
Q Consensus        87 ~wd~~~~~-----------~v~~i~~sp~~  105 (106)
                      +||+.++.           .+..++++|+-
T Consensus       253 ~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~  282 (307)
T KOG0316|consen  253 FWDLVDETQISKLSVVSTVIVTDLSCHPTM  282 (307)
T ss_pred             EEEeccceeeeeeccCCceeEEeeecccCc
Confidence            99999876           36788888863

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=99.33  E-value=1.5e-11  Score=90.91  Aligned_cols=94  Identities=17%  Similarity=0.216  Sum_probs=76.0

Q ss_pred             CCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCc
Q 036317            9 GGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGS   84 (106)
Q Consensus         9 ~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~   84 (106)
                      .+|+++|+.++|+|.|..|++++.|++++||+...+..    ..|...+..+.|+|+|.-  ....--...+++++.|++
T Consensus       356 ~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v--~~n~~~~~~l~sas~dst  433 (524)
T KOG0273|consen  356 IGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPV--TSNPNMNLMLASASFDST  433 (524)
T ss_pred             ecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCc--cCCCcCCceEEEeecCCe
Confidence            36788999999999999999999999999999765544    556677888999999711  011111146899999999


Q ss_pred             EEEEECCCCC----------CCcEEEeCCC
Q 036317           85 VYAWSARSGK----------EPPVIKWAPG  104 (106)
Q Consensus        85 i~~wd~~~~~----------~v~~i~~sp~  104 (106)
                      |++||++.|.          +|-.++|+|+
T Consensus       434 V~lwdv~~gv~i~~f~kH~~pVysvafS~~  463 (524)
T KOG0273|consen  434 VKLWDVESGVPIHTLMKHQEPVYSVAFSPN  463 (524)
T ss_pred             EEEEEccCCceeEeeccCCCceEEEEecCC
Confidence            9999999997          8889999986

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.33  E-value=2e-11  Score=95.60  Aligned_cols=100  Identities=12%  Similarity=0.257  Sum_probs=82.7

Q ss_pred             eecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce--------e---cc-CCCcEEEEEecC-Cccee------
Q 036317            6 FSDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL--------P---VS-HNSTLEASFSQH-LSLVA------   66 (106)
Q Consensus         6 ~~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~--------~---~~-~~~~~~~~fs~d-~~~~~------   66 (106)
                      ..+.+++++|.++.|+|.+++||+++-||.+++||+.++.+        +   .. ...+..++|+|+ |+|++      
T Consensus       132 ~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~  211 (933)
T KOG1274|consen  132 KVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNT  211 (933)
T ss_pred             eeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCe
Confidence            45678889999999999999999999999999999998876        1   11 223456899999 66666      


Q ss_pred             --------------------------eeeeecccEEEEecCCCcEEEEECCC------CCCCcEEEeCCCC
Q 036317           67 --------------------------LSVLILRSWVLEGSGDGSVYAWSARS------GKEPPVIKWAPGS  105 (106)
Q Consensus        67 --------------------------~~~~~~~~~i~t~s~d~~i~~wd~~~------~~~v~~i~~sp~~  105 (106)
                                                +.|.++.+|||++.-||.|.|||.++      ...|.|++|.|+-
T Consensus       212 Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~~~~~~~Vc~~aw~p~~  282 (933)
T KOG1274|consen  212 VKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHERHEFKRAVCCEAWKPNA  282 (933)
T ss_pred             EEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchhccccceeEEEecCCCC
Confidence                                      36677779999999999999999994      3399999999874

>PTZ00420 coronin; Provisional

Probab=99.32  E-value=2.9e-11  Score=92.68  Aligned_cols=77  Identities=3%  Similarity=-0.076  Sum_probs=65.6

Q ss_pred             cCCCCCCeeEEEECCCCCeE-EEEeCCCeEEEEEcCCCce---eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCC
Q 036317            8 DGGDVSDANEVKLSNDGRLM-LLTTLEGHIHVLHSFQGTL---PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDG   83 (106)
Q Consensus         8 ~~~~~~~v~~v~~spdg~~l-~~~~~~~~i~l~d~~~~~~---~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~   83 (106)
                      +.+|...|.+++|+|++..+ ++++.|++++|||+.+++.   ..+...+.+++|+|+|           ..+++++.|+
T Consensus       121 L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG-----------~lLat~s~D~  189 (568)
T PTZ00420        121 LKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKG-----------NLLSGTCVGK  189 (568)
T ss_pred             eecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCC-----------CEEEEEecCC
Confidence            34667799999999999876 5778999999999998875   2244567789999999           9999999999


Q ss_pred             cEEEEECCCCCC
Q 036317           84 SVYAWSARSGKE   95 (106)
Q Consensus        84 ~i~~wd~~~~~~   95 (106)
                      .|++||+++++.
T Consensus       190 ~IrIwD~Rsg~~  201 (568)
T PTZ00420        190 HMHIIDPRKQEI  201 (568)
T ss_pred             EEEEEECCCCcE
Confidence            999999999873

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.32  E-value=1.5e-11  Score=90.31  Aligned_cols=80  Identities=23%  Similarity=0.330  Sum_probs=71.3

Q ss_pred             CeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEEE
Q 036317           14 DANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWS   89 (106)
Q Consensus        14 ~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd   89 (106)
                      ++++.+|+|||..+.+++.|+.+++||+..+..    ++|.+++.+++|+.+|           -|++++.+|+.|++||
T Consensus       349 ~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENG-----------Y~Lat~add~~V~lwD  417 (506)
T KOG0289|consen  349 EYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENG-----------YWLATAADDGSVKLWD  417 (506)
T ss_pred             eeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCc-----------eEEEEEecCCeEEEEE
Confidence            689999999999999999999999999987654    7788899999999999           9999999999999999


Q ss_pred             CCCCC-----------CCcEEEeCCC
Q 036317           90 ARSGK-----------EPPVIKWAPG  104 (106)
Q Consensus        90 ~~~~~-----------~v~~i~~sp~  104 (106)
                      ++.-+           .+..+.|.+.
T Consensus       418 LRKl~n~kt~~l~~~~~v~s~~fD~S  443 (506)
T KOG0289|consen  418 LRKLKNFKTIQLDEKKEVNSLSFDQS  443 (506)
T ss_pred             ehhhcccceeeccccccceeEEEcCC
Confidence            98765           4777777653

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.29  E-value=1.7e-11  Score=89.77  Aligned_cols=88  Identities=14%  Similarity=0.118  Sum_probs=73.9

Q ss_pred             eecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce-----eccCCCcEEEEEecCCcceeeeeeecccEEEEec
Q 036317            6 FSDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL-----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGS   80 (106)
Q Consensus         6 ~~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~-----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s   80 (106)
                      +++.+|..+|..+.||||.+|+++.+.+.-+.+||+.+|..     .+...++.+|+|.|||           ..+++|+
T Consensus       263 ~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg-----------~~~V~Gs  331 (519)
T KOG0293|consen  263 KTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDG-----------FRFVTGS  331 (519)
T ss_pred             eeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCC-----------ceeEecC
Confidence            45678888999999999999999999999999999999987     2223467789999999           9999999


Q ss_pred             CCCcEEEEECCCCC----------CCcEEEeCCC
Q 036317           81 GDGSVYAWSARSGK----------EPPVIKWAPG  104 (106)
Q Consensus        81 ~d~~i~~wd~~~~~----------~v~~i~~sp~  104 (106)
                      .|++|.+||+....          .|.+++.+++
T Consensus       332 ~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~D  365 (519)
T KOG0293|consen  332 PDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYD  365 (519)
T ss_pred             CCCcEEEecCCcchhhcccccccceeEEEEEcCC
Confidence            99999999997543          4666666553

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.29  E-value=3.8e-11  Score=89.87  Aligned_cols=81  Identities=17%  Similarity=0.352  Sum_probs=73.9

Q ss_pred             CeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce------eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEE
Q 036317           14 DANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL------PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYA   87 (106)
Q Consensus        14 ~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~------~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~   87 (106)
                      ...+++++|++..++++++|+.+|+|.+..+..      ..+.+.++.++||||+           .|+++++..+.+-+
T Consensus       445 ~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~-----------~yla~~Da~rkvv~  513 (603)
T KOG0318|consen  445 ESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDG-----------AYLAAGDASRKVVL  513 (603)
T ss_pred             ccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCC-----------cEEEEeccCCcEEE
Confidence            678999999999999999999999999876553      4577888999999999           99999999999999


Q ss_pred             EECCCCC-----------CCcEEEeCCCC
Q 036317           88 WSARSGK-----------EPPVIKWAPGS  105 (106)
Q Consensus        88 wd~~~~~-----------~v~~i~~sp~~  105 (106)
                      ||+++.+           .|.|++|+|+.
T Consensus       514 yd~~s~~~~~~~w~FHtakI~~~aWsP~n  542 (603)
T KOG0318|consen  514 YDVASREVKTNRWAFHTAKINCVAWSPNN  542 (603)
T ss_pred             EEcccCceecceeeeeeeeEEEEEeCCCc
Confidence            9999987           89999999985

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.28  E-value=6.8e-11  Score=82.70  Aligned_cols=89  Identities=16%  Similarity=0.253  Sum_probs=77.3

Q ss_pred             eeecCCCCCCeeEEEECCC-CCeEEEEeCCCeEEEEEcCCCce--------eccCCCcEEEEEecCCcceeeeeeecccE
Q 036317            5 IFSDGGDVSDANEVKLSND-GRLMLLTTLEGHIHVLHSFQGTL--------PVSHNSTLEASFSQHLSLVALSVLILRSW   75 (106)
Q Consensus         5 ~~~~~~~~~~v~~v~~spd-g~~l~~~~~~~~i~l~d~~~~~~--------~~~~~~~~~~~fs~d~~~~~~~~~~~~~~   75 (106)
                      ...+.+|++++-.++|+|- |..+++++.|+.|++|+...+.-        ..++..+.+++|+|.|           ++
T Consensus         7 ~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g-----------~~   75 (312)
T KOG0645|consen    7 EQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHG-----------RY   75 (312)
T ss_pred             EEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCC-----------cE
Confidence            4567888999999999999 99999999999999999874332        3466677889999999           99


Q ss_pred             EEEecCCCcEEEEECCCCC------------CCcEEEeCCC
Q 036317           76 VLEGSGDGSVYAWSARSGK------------EPPVIKWAPG  104 (106)
Q Consensus        76 i~t~s~d~~i~~wd~~~~~------------~v~~i~~sp~  104 (106)
                      ++++|-|.++.||.-.+++            .|.|++||++
T Consensus        76 La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~s  116 (312)
T KOG0645|consen   76 LASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSAS  116 (312)
T ss_pred             EEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCC
Confidence            9999999999999888765            8999999875

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=99.28  E-value=4.7e-11  Score=88.36  Aligned_cols=86  Identities=22%  Similarity=0.335  Sum_probs=71.4

Q ss_pred             cCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce-----------------------------------------
Q 036317            8 DGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL-----------------------------------------   46 (106)
Q Consensus         8 ~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~-----------------------------------------   46 (106)
                      +..|+++|.+++|+.+|.|+++++.|+++-+||..+|++                                         
T Consensus       272 l~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P  351 (524)
T KOG0273|consen  272 LGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRP  351 (524)
T ss_pred             hhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCc
Confidence            456788999999999999999999999999999977765                                         


Q ss_pred             ----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEEECCCCC----------CCcEEEeCCC
Q 036317           47 ----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSARSGK----------EPPVIKWAPG  104 (106)
Q Consensus        47 ----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd~~~~~----------~v~~i~~sp~  104 (106)
                          .+|++.+..+.|.|.+           ..++++|+|++++||.+..+.          .|-.++|+|.
T Consensus       352 ~~t~~GH~g~V~alk~n~tg-----------~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~  412 (524)
T KOG0273|consen  352 VKTFIGHHGEVNALKWNPTG-----------SLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPT  412 (524)
T ss_pred             ceeeecccCceEEEEECCCC-----------ceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCC
Confidence                1345556666777777           999999999999999987655          6777888885

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.28  E-value=1.2e-11  Score=95.60  Aligned_cols=85  Identities=18%  Similarity=0.291  Sum_probs=75.3

Q ss_pred             CCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce---eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcE
Q 036317            9 GGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL---PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSV   85 (106)
Q Consensus         9 ~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~---~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i   85 (106)
                      .||.+.|-++.||.++- |+++++|++++||++...+.   ..|...++++.|.|-.          ++|+++||-|+.|
T Consensus       366 ~GHt~DILDlSWSKn~f-LLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFnPvD----------DryFiSGSLD~Kv  434 (712)
T KOG0283|consen  366 KGHTADILDLSWSKNNF-LLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFNPVD----------DRYFISGSLDGKV  434 (712)
T ss_pred             hccchhheecccccCCe-eEeccccccEEeecCCCcceeeEEecCCeeEEEEecccC----------CCcEeecccccce
Confidence            58889999999999875 99999999999999987665   5577889999999865          4999999999999


Q ss_pred             EEEECCCCC---------CCcEEEeCCC
Q 036317           86 YAWSARSGK---------EPPVIKWAPG  104 (106)
Q Consensus        86 ~~wd~~~~~---------~v~~i~~sp~  104 (106)
                      +||++...+         -|..+.|.|+
T Consensus       435 RiWsI~d~~Vv~W~Dl~~lITAvcy~Pd  462 (712)
T KOG0283|consen  435 RLWSISDKKVVDWNDLRDLITAVCYSPD  462 (712)
T ss_pred             EEeecCcCeeEeehhhhhhheeEEeccC
Confidence            999999887         8899999986

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.28  E-value=2.6e-11  Score=83.71  Aligned_cols=86  Identities=20%  Similarity=0.340  Sum_probs=74.8

Q ss_pred             CCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCc
Q 036317            9 GGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGS   84 (106)
Q Consensus         9 ~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~   84 (106)
                      ....+.|+.+.|+-||+|.++++.|+++++||...|.+    .++-..+..++.+.|+           ..+++++.|..
T Consensus        14 ~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dn-----------skf~s~GgDk~   82 (307)
T KOG0316|consen   14 DCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDN-----------SKFASCGGDKA   82 (307)
T ss_pred             cccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccc-----------cccccCCCCce
Confidence            45567999999999999999999999999999999887    3344456788889999           99999999999


Q ss_pred             EEEEECCCCC----------CCcEEEeCCCC
Q 036317           85 VYAWSARSGK----------EPPVIKWAPGS  105 (106)
Q Consensus        85 i~~wd~~~~~----------~v~~i~~sp~~  105 (106)
                      |++||+.+|+          .|+.++|+..+
T Consensus        83 v~vwDV~TGkv~Rr~rgH~aqVNtV~fNees  113 (307)
T KOG0316|consen   83 VQVWDVNTGKVDRRFRGHLAQVNTVRFNEES  113 (307)
T ss_pred             EEEEEcccCeeeeecccccceeeEEEecCcc
Confidence            9999999998          78888887643

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.27  E-value=8.5e-11  Score=83.16  Aligned_cols=93  Identities=26%  Similarity=0.356  Sum_probs=65.3

Q ss_pred             CCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce---eccCCC-cEEEEEecCCccee---------------------
Q 036317           12 VSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL---PVSHNS-TLEASFSQHLSLVA---------------------   66 (106)
Q Consensus        12 ~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~---~~~~~~-~~~~~fs~d~~~~~---------------------   66 (106)
                      .++|++++|+++|+++++++.|..+.|||..+++.   ...+.+ +-.+.|.+..+.++                     
T Consensus        14 ~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkyl   93 (311)
T KOG1446|consen   14 NGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYL   93 (311)
T ss_pred             CCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCceE
Confidence            56999999999999999999999999999999876   111111 11233333322222                     


Q ss_pred             ------------eeeeecccEEEEecCCCcEEEEECCCCC--------CCcEEEeCCC
Q 036317           67 ------------LSVLILRSWVLEGSGDGSVYAWSARSGK--------EPPVIKWAPG  104 (106)
Q Consensus        67 ------------~~~~~~~~~i~t~s~d~~i~~wd~~~~~--------~v~~i~~sp~  104 (106)
                                  +++.+-+..+++++.|++|++||++..+        .....+|+|.
T Consensus        94 RYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~  151 (311)
T KOG1446|consen   94 RYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPE  151 (311)
T ss_pred             EEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcceeECCC
Confidence                        1222222778999999999999999765        5566677775

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.27  E-value=5.7e-11  Score=85.69  Aligned_cols=83  Identities=11%  Similarity=0.159  Sum_probs=70.5

Q ss_pred             CCCCeeEEEECCC---------------CCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeee
Q 036317           11 DVSDANEVKLSND---------------GRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLI   71 (106)
Q Consensus        11 ~~~~v~~v~~spd---------------g~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~   71 (106)
                      |..+|.+++|-|.               |.++.+++.|++|++||+.++..    .++.+.+.+++|+|.|         
T Consensus       276 hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~G---------  346 (406)
T KOG0295|consen  276 HEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGG---------  346 (406)
T ss_pred             cccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCC---------
Confidence            3447777777653               35889999999999999999987    5677888999999999         


Q ss_pred             cccEEEEecCCCcEEEEECCCCC----------CCcEEEeCCC
Q 036317           72 LRSWVLEGSGDGSVYAWSARSGK----------EPPVIKWAPG  104 (106)
Q Consensus        72 ~~~~i~t~s~d~~i~~wd~~~~~----------~v~~i~~sp~  104 (106)
                        +||+++.+|+++++||+++++          -+.+++|+-+
T Consensus       347 --kyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~  387 (406)
T KOG0295|consen  347 --KYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKT  387 (406)
T ss_pred             --eEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCC
Confidence              999999999999999999987          6777777654

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.26  E-value=4.4e-11  Score=87.38  Aligned_cols=81  Identities=28%  Similarity=0.450  Sum_probs=70.5

Q ss_pred             CCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce------ecc--CCCcEEEEEecCCcceeeeeeecccEEEEecCCCc
Q 036317           13 SDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL------PVS--HNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGS   84 (106)
Q Consensus        13 ~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~------~~~--~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~   84 (106)
                      +.|+++..+++|..+++.+-|.++.++|..+.+.      .+.  ......+.|||++           .|+++||.||.
T Consensus       342 g~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~-----------~YvaAGS~dgs  410 (459)
T KOG0288|consen  342 GRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDG-----------SYVAAGSADGS  410 (459)
T ss_pred             cceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCC-----------ceeeeccCCCc
Confidence            4899999999999999999999999999988776      111  1125679999999           99999999999


Q ss_pred             EEEEECCCCC------------CCcEEEeCCC
Q 036317           85 VYAWSARSGK------------EPPVIKWAPG  104 (106)
Q Consensus        85 i~~wd~~~~~------------~v~~i~~sp~  104 (106)
                      |+||++.+|+            .|.+++|+|.
T Consensus       411 v~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~s  442 (459)
T KOG0288|consen  411 VYIWSVFTGKLEKVLSLSTSNAAITSLSWNPS  442 (459)
T ss_pred             EEEEEccCceEEEEeccCCCCcceEEEEEcCC
Confidence            9999999998            5899999984

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.25  E-value=3.4e-11  Score=87.27  Aligned_cols=85  Identities=18%  Similarity=0.322  Sum_probs=70.4

Q ss_pred             CCCCCCeeEEEECCCCCe-EEEEeCCCeEEEEEcCCCce------eccCCCcEEEEEecCCcceeeeeeecccEEEEecC
Q 036317            9 GGDVSDANEVKLSNDGRL-MLLTTLEGHIHVLHSFQGTL------PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSG   81 (106)
Q Consensus         9 ~~~~~~v~~v~~spdg~~-l~~~~~~~~i~l~d~~~~~~------~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~   81 (106)
                      .+|...|..++|||..+- +++++-|+.|+|||++.+..      ..+.+.+.-++|+.+.           .+|++|+.
T Consensus       254 ~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~-----------~lLasG~D  322 (440)
T KOG0302|consen  254 TGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRRE-----------PLLASGGD  322 (440)
T ss_pred             cccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCc-----------ceeeecCC
Confidence            356779999999998554 56788999999999988743      3344556668999888           89999999


Q ss_pred             CCcEEEEECCCCC-------------CCcEEEeCCC
Q 036317           82 DGSVYAWSARSGK-------------EPPVIKWAPG  104 (106)
Q Consensus        82 d~~i~~wd~~~~~-------------~v~~i~~sp~  104 (106)
                      ||+++|||++.-+             +|.+|.|+|.
T Consensus       323 dGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~  358 (440)
T KOG0302|consen  323 DGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPH  358 (440)
T ss_pred             CceEEEEEhhhccCCCcceeEEeccCCeeEEEeccc
Confidence            9999999999754             8999999985

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.25  E-value=1e-10  Score=84.38  Aligned_cols=87  Identities=17%  Similarity=0.236  Sum_probs=76.6

Q ss_pred             ecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCC
Q 036317            7 SDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGD   82 (106)
Q Consensus         7 ~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d   82 (106)
                      .+..|+.+|.+++.+|+.+++++++.|..-+||+.-++..    .+|+.+++++.||.||           .+|+||+-+
T Consensus        59 tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~Fshdg-----------tlLATGdms  127 (399)
T KOG0296|consen   59 TFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDG-----------TLLATGDMS  127 (399)
T ss_pred             ehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCc-----------eEEEecCCC
Confidence            3456788999999999999999999999999999999887    6788999999999999           999999999


Q ss_pred             CcEEEEECCCCC----------CCcEEEeCCC
Q 036317           83 GSVYAWSARSGK----------EPPVIKWAPG  104 (106)
Q Consensus        83 ~~i~~wd~~~~~----------~v~~i~~sp~  104 (106)
                      |.|+||+..++.          .+.=++|+|+
T Consensus       128 G~v~v~~~stg~~~~~~~~e~~dieWl~WHp~  159 (399)
T KOG0296|consen  128 GKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPR  159 (399)
T ss_pred             ccEEEEEcccCceEEEeecccCceEEEEeccc
Confidence            999999999987          3334567774

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.24  E-value=5.7e-11  Score=91.92  Aligned_cols=82  Identities=18%  Similarity=0.337  Sum_probs=71.7

Q ss_pred             CCeeEEEECCC-CCeEEEEeCCCeEEEEEcCCCce-----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEE
Q 036317           13 SDANEVKLSND-GRLMLLTTLEGHIHVLHSFQGTL-----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVY   86 (106)
Q Consensus        13 ~~v~~v~~spd-g~~l~~~~~~~~i~l~d~~~~~~-----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~   86 (106)
                      ..|++|+|+|. +.+++++..+|.+.+||+..-+.     ..|.+++..+.|+|++           .+||||+.|++|+
T Consensus       177 ESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr-----------~~lATGGRDK~vk  245 (839)
T KOG0269|consen  177 ESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNR-----------EWLATGGRDKMVK  245 (839)
T ss_pred             hhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCC-----------ceeeecCCCccEE
Confidence            47999999985 77788888999999999986554     4477888899999999           9999999999999


Q ss_pred             EEECCCCC-----------CCcEEEeCCCC
Q 036317           87 AWSARSGK-----------EPPVIKWAPGS  105 (106)
Q Consensus        87 ~wd~~~~~-----------~v~~i~~sp~~  105 (106)
                      |||+.+++           ++.+++|-|.+
T Consensus       246 iWd~t~~~~~~~~tInTiapv~rVkWRP~~  275 (839)
T KOG0269|consen  246 IWDMTDSRAKPKHTINTIAPVGRVKWRPAR  275 (839)
T ss_pred             EEeccCCCccceeEEeecceeeeeeeccCc
Confidence            99999776           88999998865

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.23  E-value=1.1e-10  Score=81.67  Aligned_cols=86  Identities=16%  Similarity=0.274  Sum_probs=78.3

Q ss_pred             cCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCC
Q 036317            8 DGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDG   83 (106)
Q Consensus         8 ~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~   83 (106)
                      +.||.-+++.++++.+|..|.+++.|....+|-..+|+.    .+|.+.+.++..+.+.           +.++||+.|.
T Consensus         6 l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s-----------~~liTGSAD~   74 (327)
T KOG0643|consen    6 LQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDS-----------KHLITGSADQ   74 (327)
T ss_pred             cccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCc-----------ceeeeccccc
Confidence            456777999999999999999999999999999988877    6788999999999999           9999999999


Q ss_pred             cEEEEECCCCC---------CCcEEEeCCC
Q 036317           84 SVYAWSARSGK---------EPPVIKWAPG  104 (106)
Q Consensus        84 ~i~~wd~~~~~---------~v~~i~~sp~  104 (106)
                      ++++||.++|+         +|+.+.|++.
T Consensus        75 t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~  104 (327)
T KOG0643|consen   75 TAKLWDVETGKQLATWKTNSPVKRVDFSFG  104 (327)
T ss_pred             eeEEEEcCCCcEEEEeecCCeeEEEeeccC
Confidence            99999999999         7888888764

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.22  E-value=4.7e-11  Score=93.88  Aligned_cols=87  Identities=15%  Similarity=0.156  Sum_probs=78.1

Q ss_pred             ecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCC
Q 036317            7 SDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGD   82 (106)
Q Consensus         7 ~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d   82 (106)
                      +...|.++|+.+.|+|++-.+++++.|-.|++|+..+.+.    .+|-.++..+.|++..           -+|+++|+|
T Consensus        46 rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHhey-----------PWIlSASDD  114 (1202)
T KOG0292|consen   46 RFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEY-----------PWILSASDD  114 (1202)
T ss_pred             hhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCC-----------ceEEEccCC
Confidence            3456788999999999999999999999999999998887    5677888889999999           999999999


Q ss_pred             CcEEEEECCCCC----------CCcEEEeCCC
Q 036317           83 GSVYAWSARSGK----------EPPVIKWAPG  104 (106)
Q Consensus        83 ~~i~~wd~~~~~----------~v~~i~~sp~  104 (106)
                      .+|+||+.++++          -|-|.+|+|.
T Consensus       115 QTIrIWNwqsr~~iavltGHnHYVMcAqFhpt  146 (1202)
T KOG0292|consen  115 QTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPT  146 (1202)
T ss_pred             CeEEEEeccCCceEEEEecCceEEEeeccCCc
Confidence            999999999988          5667788884

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.22  E-value=4.3e-10  Score=75.36  Aligned_cols=84  Identities=23%  Similarity=0.376  Sum_probs=70.7

Q ss_pred             CCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcE
Q 036317           10 GDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSV   85 (106)
Q Consensus        10 ~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i   85 (106)
                      .+...+.+++|+|+++++++++.++.+++||..+++.    ..+...+..+.|+|++           +.+++++.|+.+
T Consensus       133 ~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-----------~~l~~~~~~~~i  201 (289)
T cd00200         133 GHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDG-----------EKLLSSSSDGTI  201 (289)
T ss_pred             cCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCc-----------CEEEEecCCCcE
Confidence            4556899999999999888888899999999987765    3344467789999999           999999999999


Q ss_pred             EEEECCCCC----------CCcEEEeCCC
Q 036317           86 YAWSARSGK----------EPPVIKWAPG  104 (106)
Q Consensus        86 ~~wd~~~~~----------~v~~i~~sp~  104 (106)
                      ++||+++++          .+.++.|+|+
T Consensus       202 ~i~d~~~~~~~~~~~~~~~~i~~~~~~~~  230 (289)
T cd00200         202 KLWDLSTGKCLGTLRGHENGVNSVAFSPD  230 (289)
T ss_pred             EEEECCCCceecchhhcCCceEEEEEcCC
Confidence            999998765          6778888874

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.21  E-value=6.8e-11  Score=90.70  Aligned_cols=76  Identities=16%  Similarity=0.226  Sum_probs=64.8

Q ss_pred             ecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce--------eccCCCcEEEEEecCCcceeeeeeecccEEEE
Q 036317            7 SDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL--------PVSHNSTLEASFSQHLSLVALSVLILRSWVLE   78 (106)
Q Consensus         7 ~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~--------~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t   78 (106)
                      .+.+|.-.|+.++|||||++|++++.|.++.+|..+....        ..|...+.+|+|+||+           ++++|
T Consensus       567 ~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde-----------~~FaT  635 (764)
T KOG1063|consen  567 ELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDE-----------KYFAT  635 (764)
T ss_pred             eecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCccc-----------ceeEE
Confidence            4566666899999999999999999999999999765443        2244445689999999           99999


Q ss_pred             ecCCCcEEEEECCCC
Q 036317           79 GSGDGSVYAWSARSG   93 (106)
Q Consensus        79 ~s~d~~i~~wd~~~~   93 (106)
                      +|.|.+|++|....+
T Consensus       636 aSRDK~VkVW~~~~~  650 (764)
T KOG1063|consen  636 ASRDKKVKVWEEPDL  650 (764)
T ss_pred             ecCCceEEEEeccCc
Confidence            999999999999887

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.20  E-value=1.6e-10  Score=83.36  Aligned_cols=103  Identities=14%  Similarity=0.163  Sum_probs=83.2

Q ss_pred             CceeeecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeec----c
Q 036317            2 PFDIFSDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLIL----R   73 (106)
Q Consensus         2 ~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~----~   73 (106)
                      .|+.+++.++...|.-++.+.||..+++++.|.++++|-..+++.    ..+..++..++|-|...|-.+...--    .
T Consensus       225 g~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~  304 (406)
T KOG0295|consen  225 GYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGG  304 (406)
T ss_pred             ceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCc
Confidence            367788888888999999999999999999999999999988844    44555666788888764333322111    1


Q ss_pred             cEEEEecCCCcEEEEECCCCC----------CCcEEEeCCC
Q 036317           74 SWVLEGSGDGSVYAWSARSGK----------EPPVIKWAPG  104 (106)
Q Consensus        74 ~~i~t~s~d~~i~~wd~~~~~----------~v~~i~~sp~  104 (106)
                      +++.++|.|++|++||+.+|+          +|+.++|+|.
T Consensus       305 ~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~  345 (406)
T KOG0295|consen  305 QVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPG  345 (406)
T ss_pred             cEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCC
Confidence            689999999999999999998          9999999974

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.20  E-value=4.9e-11  Score=91.85  Aligned_cols=77  Identities=19%  Similarity=0.209  Sum_probs=70.0

Q ss_pred             ecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCC
Q 036317            7 SDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGD   82 (106)
Q Consensus         7 ~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d   82 (106)
                      ....|..+|++|+.+|+.+.++++++|++.+||++++.++    .+|...+.++.|+|..           +.++|+|.|
T Consensus       458 t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~d-----------q~laT~SgD  526 (775)
T KOG0319|consen  458 TERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKND-----------QLLATCSGD  526 (775)
T ss_pred             HHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEecccc-----------ceeEeccCC
Confidence            4456777999999999999999999999999999997776    6788788899999999           999999999


Q ss_pred             CcEEEEECCCCC
Q 036317           83 GSVYAWSARSGK   94 (106)
Q Consensus        83 ~~i~~wd~~~~~   94 (106)
                      ++|+||.+++..
T Consensus       527 ~TvKIW~is~fS  538 (775)
T KOG0319|consen  527 KTVKIWSISTFS  538 (775)
T ss_pred             ceEEEEEeccce
Confidence            999999999876

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.20  E-value=2.7e-10  Score=90.06  Aligned_cols=83  Identities=12%  Similarity=0.153  Sum_probs=66.9

Q ss_pred             CCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce-----------eccCCCcEEEEEecC-CcceeeeeeecccEEE
Q 036317           10 GDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL-----------PVSHNSTLEASFSQH-LSLVALSVLILRSWVL   77 (106)
Q Consensus        10 ~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~-----------~~~~~~~~~~~fs~d-~~~~~~~~~~~~~~i~   77 (106)
                      .+.+.|.+++|+|+|+++++++.|+.|+|||..+...           ...+..+..++|++. +           .+|+
T Consensus       481 ~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~-----------~~la  549 (793)
T PLN00181        481 NSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIK-----------SQVA  549 (793)
T ss_pred             CCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCC-----------CEEE
Confidence            3566899999999999999999999999999753211           112334556788764 6           8899


Q ss_pred             EecCCCcEEEEECCCCC----------CCcEEEeCC
Q 036317           78 EGSGDGSVYAWSARSGK----------EPPVIKWAP  103 (106)
Q Consensus        78 t~s~d~~i~~wd~~~~~----------~v~~i~~sp  103 (106)
                      +++.|++|++||+++++          .|.+++|+|
T Consensus       550 s~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p  585 (793)
T PLN00181        550 SSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSS  585 (793)
T ss_pred             EEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcC
Confidence            99999999999999876          788999987

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.19  E-value=1e-10  Score=83.47  Aligned_cols=87  Identities=15%  Similarity=0.199  Sum_probs=74.3

Q ss_pred             eecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce-------eccCCCcEEEEEecCCcceeeeeeecccEEEE
Q 036317            6 FSDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL-------PVSHNSTLEASFSQHLSLVALSVLILRSWVLE   78 (106)
Q Consensus         6 ~~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~-------~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t   78 (106)
                      |++..+..+|.++.|+|.|+++++++....+++||+.+.+.       .++.+.++.+.+++.+           +.-+|
T Consensus       210 ~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~-----------~lYvT  278 (430)
T KOG0640|consen  210 FKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTG-----------SLYVT  278 (430)
T ss_pred             HHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCc-----------cEEEE
Confidence            34445567999999999999999999999999999998876       3467788899999999           99999


Q ss_pred             ecCCCcEEEEECCCCC------------CCcEEEeCC
Q 036317           79 GSGDGSVYAWSARSGK------------EPPVIKWAP  103 (106)
Q Consensus        79 ~s~d~~i~~wd~~~~~------------~v~~i~~sp  103 (106)
                      +|.||.|++||=-+++            .|.+..|..
T Consensus       279 aSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftk  315 (430)
T KOG0640|consen  279 ASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTK  315 (430)
T ss_pred             eccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEcc
Confidence            9999999999987766            666666653

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.19  E-value=1.6e-10  Score=83.63  Aligned_cols=85  Identities=19%  Similarity=0.216  Sum_probs=76.4

Q ss_pred             CCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcE
Q 036317           10 GDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSV   85 (106)
Q Consensus        10 ~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i   85 (106)
                      ||-+.|.+++..|.-+.+++++.|.++++||..+...    .+|.+.+..+.+-|..           -.|+|||-|++|
T Consensus       233 GHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~d-----------pqvit~S~D~tv  301 (460)
T KOG0285|consen  233 GHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTD-----------PQVITGSHDSTV  301 (460)
T ss_pred             cccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCC-----------CceEEecCCceE
Confidence            5567899999999999999999999999999988654    6788889999999988           899999999999


Q ss_pred             EEEECCCCC----------CCcEEEeCCCC
Q 036317           86 YAWSARSGK----------EPPVIKWAPGS  105 (106)
Q Consensus        86 ~~wd~~~~~----------~v~~i~~sp~~  105 (106)
                      ++||+..|+          .++++..+|+-
T Consensus       302 rlWDl~agkt~~tlt~hkksvral~lhP~e  331 (460)
T KOG0285|consen  302 RLWDLRAGKTMITLTHHKKSVRALCLHPKE  331 (460)
T ss_pred             EEeeeccCceeEeeecccceeeEEecCCch
Confidence            999999998          88888888863

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.19  E-value=9.8e-11  Score=91.24  Aligned_cols=75  Identities=23%  Similarity=0.340  Sum_probs=65.1

Q ss_pred             cCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce---eccCCCcEEEEEecCCcceeeeeeecccEEEEecCC-C
Q 036317            8 DGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL---PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGD-G   83 (106)
Q Consensus         8 ~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~---~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d-~   83 (106)
                      +.||.++|+++.|||||+++++++.|++|++||+.++.+   ..-..+++.++|||+|           .++||.+.| .
T Consensus       572 f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd~~~~sls~SPng-----------D~LAT~Hvd~~  640 (910)
T KOG1539|consen  572 FWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNG-----------DFLATVHVDQN  640 (910)
T ss_pred             hhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecCCcceeeEECCCC-----------CEEEEEEecCc
Confidence            357788999999999999999999999999999999988   2234567789999999           999999998 5


Q ss_pred             cEEEEECCCC
Q 036317           84 SVYAWSARSG   93 (106)
Q Consensus        84 ~i~~wd~~~~   93 (106)
                      -|++|--++.
T Consensus       641 gIylWsNksl  650 (910)
T KOG1539|consen  641 GIYLWSNKSL  650 (910)
T ss_pred             eEEEEEchhH
Confidence            7999966543

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.18  E-value=1e-10  Score=92.60  Aligned_cols=88  Identities=17%  Similarity=0.199  Sum_probs=76.8

Q ss_pred             eecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecC
Q 036317            6 FSDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSG   81 (106)
Q Consensus         6 ~~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~   81 (106)
                      ..+.+|.+.|.++.|+||+.++++++.|+.|.+||..+.+.    ..|.+.+..++|.|-|           +|+++=+.
T Consensus       123 ~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~G-----------ky~ASqsd  191 (942)
T KOG0973|consen  123 SILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIG-----------KYFASQSD  191 (942)
T ss_pred             EEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeecccccccceEECCcc-----------CeeeeecC
Confidence            34578889999999999999999999999999999999865    5677788899999999           99999999


Q ss_pred             CCcEEEEECCCCC----------------CCcEEEeCCC
Q 036317           82 DGSVYAWSARSGK----------------EPPVIKWAPG  104 (106)
Q Consensus        82 d~~i~~wd~~~~~----------------~v~~i~~sp~  104 (106)
                      |+++++|++.+=.                -...++|||+
T Consensus       192 Drtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPD  230 (942)
T KOG0973|consen  192 DRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPD  230 (942)
T ss_pred             CceEEEEEcccceeeEeeccchhhCCCcceeeecccCCC
Confidence            9999999965511                5677888886

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.18  E-value=1.7e-10  Score=91.40  Aligned_cols=88  Identities=19%  Similarity=0.256  Sum_probs=75.7

Q ss_pred             eecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCC----------Cce------------eccCCCcEEEEEecCCc
Q 036317            6 FSDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQ----------GTL------------PVSHNSTLEASFSQHLS   63 (106)
Q Consensus         6 ~~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~----------~~~------------~~~~~~~~~~~fs~d~~   63 (106)
                      .++..|.+.|+++.|||||+++|+|+.|+.+.+|+-..          |..            .+|.+.+..+.|+|++ 
T Consensus        63 ~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~-  141 (942)
T KOG0973|consen   63 CTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDD-  141 (942)
T ss_pred             eeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCc-
Confidence            45667788999999999999999999999999998652          111            3567778899999999 


Q ss_pred             ceeeeeeecccEEEEecCCCcEEEEECCCCC----------CCcEEEeCCC
Q 036317           64 LVALSVLILRSWVLEGSGDGSVYAWSARSGK----------EPPVIKWAPG  104 (106)
Q Consensus        64 ~~~~~~~~~~~~i~t~s~d~~i~~wd~~~~~----------~v~~i~~sp~  104 (106)
                                .++++++.|++|.+|+.++.+          .|..+.|.|-
T Consensus       142 ----------~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~  182 (942)
T KOG0973|consen  142 ----------SLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPI  182 (942)
T ss_pred             ----------cEEEEecccceEEEEccccceeeeeeecccccccceEECCc
Confidence                      999999999999999999877          7888888884

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.18  E-value=4.4e-10  Score=78.29  Aligned_cols=98  Identities=13%  Similarity=0.234  Sum_probs=75.3

Q ss_pred             ecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce---eccCCCcEEEEEecCCcceeeee--------------
Q 036317            7 SDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL---PVSHNSTLEASFSQHLSLVALSV--------------   69 (106)
Q Consensus         7 ~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~---~~~~~~~~~~~fs~d~~~~~~~~--------------   69 (106)
                      ++.++.+.|+.+.|-...+.+++++.|++|++||.++++.   ..-..++.++..++||.+|-++-              
T Consensus       138 E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~  217 (334)
T KOG0278|consen  138 EISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGL  217 (334)
T ss_pred             hhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEecCceeEEeccccccc
Confidence            3456778899999988778888889999999999999876   22333455666677776655311              


Q ss_pred             ---------------eecccEEEEecCCCcEEEEECCCCC-----------CCcEEEeCCC
Q 036317           70 ---------------LILRSWVLEGSGDGSVYAWSARSGK-----------EPPVIKWAPG  104 (106)
Q Consensus        70 ---------------~~~~~~i~t~s~d~~i~~wd~~~~~-----------~v~~i~~sp~  104 (106)
                                     -+...++++|++|..++.+|..+|+           +|.|++|+|+
T Consensus       218 lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPd  278 (334)
T KOG0278|consen  218 LKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPD  278 (334)
T ss_pred             eeeccCccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCC
Confidence                           1222678999999999999999987           8999999996

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.17  E-value=7.8e-10  Score=74.55  Aligned_cols=82  Identities=13%  Similarity=0.304  Sum_probs=63.4

Q ss_pred             CCeeEEEECCCCCeEEEEe--CCCeEEEEEcCCCce-eccCCCcEEEEEecCCcceeeeeeecccEEEEecC---CCcEE
Q 036317           13 SDANEVKLSNDGRLMLLTT--LEGHIHVLHSFQGTL-PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSG---DGSVY   86 (106)
Q Consensus        13 ~~v~~v~~spdg~~l~~~~--~~~~i~l~d~~~~~~-~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~---d~~i~   86 (106)
                      ++|.+++|+|+|+.+++..  ....+.+||...... .........+.|+|+|           ++|+.++.   .|.+.
T Consensus        60 ~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~~~i~~~~~~~~n~i~wsP~G-----------~~l~~~g~~n~~G~l~  128 (194)
T PF08662_consen   60 GPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKGKKIFSFGTQPRNTISWSPDG-----------RFLVLAGFGNLNGDLE  128 (194)
T ss_pred             CceEEEEECcCCCEEEEEEccCCcccEEEcCcccEeEeecCCCceEEEECCCC-----------CEEEEEEccCCCcEEE
Confidence            4699999999999876553  567899999963333 3234455679999999           99888754   46799


Q ss_pred             EEECCCCC--------CCcEEEeCCCC
Q 036317           87 AWSARSGK--------EPPVIKWAPGS  105 (106)
Q Consensus        87 ~wd~~~~~--------~v~~i~~sp~~  105 (106)
                      +||+++.+        .+..++|+|+-
T Consensus       129 ~wd~~~~~~i~~~~~~~~t~~~WsPdG  155 (194)
T PF08662_consen  129 FWDVRKKKKISTFEHSDATDVEWSPDG  155 (194)
T ss_pred             EEECCCCEEeeccccCcEEEEEEcCCC
Confidence            99999776        67888999973

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.17  E-value=8.6e-11  Score=88.01  Aligned_cols=80  Identities=20%  Similarity=0.283  Sum_probs=66.3

Q ss_pred             CeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce-------eccCC--CcEEEEEecCCcceeeeeeecccEEEEecCCCc
Q 036317           14 DANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL-------PVSHN--STLEASFSQHLSLVALSVLILRSWVLEGSGDGS   84 (106)
Q Consensus        14 ~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~-------~~~~~--~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~   84 (106)
                      .+..++|+|||+.+|+++.||.|.+|+.....+       ..|..  .+.+++||+||           ++|++=+.|++
T Consensus       319 ~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg-----------~~LlSRg~D~t  387 (641)
T KOG0772|consen  319 PVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDG-----------NYLLSRGFDDT  387 (641)
T ss_pred             CceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEecccc-----------chhhhccCCCc
Confidence            788999999999999999999999999744333       22333  57789999999           99999999999


Q ss_pred             EEEEECCCCC-------------CCcEEEeCCC
Q 036317           85 VYAWSARSGK-------------EPPVIKWAPG  104 (106)
Q Consensus        85 i~~wd~~~~~-------------~v~~i~~sp~  104 (106)
                      +++||++.-+             +-....|||+
T Consensus       388 LKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd  420 (641)
T KOG0772|consen  388 LKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPD  420 (641)
T ss_pred             eeeeeccccccchhhhcCCCccCCCCccccCCC
Confidence            9999999766             4556677775

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.16  E-value=7.1e-10  Score=87.72  Aligned_cols=85  Identities=16%  Similarity=0.180  Sum_probs=68.8

Q ss_pred             cCCCCCCeeEEEECC-CCCeEEEEeCCCeEEEEEcCCCce---eccCCCcEEEEEe-cCCcceeeeeeecccEEEEecCC
Q 036317            8 DGGDVSDANEVKLSN-DGRLMLLTTLEGHIHVLHSFQGTL---PVSHNSTLEASFS-QHLSLVALSVLILRSWVLEGSGD   82 (106)
Q Consensus         8 ~~~~~~~v~~v~~sp-dg~~l~~~~~~~~i~l~d~~~~~~---~~~~~~~~~~~fs-~d~~~~~~~~~~~~~~i~t~s~d   82 (106)
                      +.+|.+.|.+++|+| ++.++++++.|+++++||..+++.   ...+..+..+.|+ +++           .++++|+.|
T Consensus       571 ~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g-----------~~latgs~d  639 (793)
T PLN00181        571 MKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESG-----------RSLAFGSAD  639 (793)
T ss_pred             ecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCC-----------CEEEEEeCC
Confidence            346677999999997 789999999999999999988766   2233456778885 678           999999999


Q ss_pred             CcEEEEECCCCC-----------CCcEEEeCC
Q 036317           83 GSVYAWSARSGK-----------EPPVIKWAP  103 (106)
Q Consensus        83 ~~i~~wd~~~~~-----------~v~~i~~sp  103 (106)
                      +.|++||+++++           .|.+++|.+
T Consensus       640 g~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~  671 (793)
T PLN00181        640 HKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVD  671 (793)
T ss_pred             CeEEEEECCCCCccceEecCCCCCEEEEEEeC
Confidence            999999998754           566777753

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.14  E-value=4.3e-10  Score=82.49  Aligned_cols=75  Identities=8%  Similarity=0.117  Sum_probs=61.6

Q ss_pred             cCCCCCCeeEEEECCCCCeE-EEEeCCCeEEEEEcCCCce-----eccCCCcEEEEEecCCcceeeeeeecccEEEEecC
Q 036317            8 DGGDVSDANEVKLSNDGRLM-LLTTLEGHIHVLHSFQGTL-----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSG   81 (106)
Q Consensus         8 ~~~~~~~v~~v~~spdg~~l-~~~~~~~~i~l~d~~~~~~-----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~   81 (106)
                      +.+|.++|++++|+|-+.++ |+++.|+++.|||.++.+.     ..+...+..+.|||..          +..+++++.
T Consensus       268 ~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~----------etvLASSg~  337 (422)
T KOG0264|consen  268 VKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHN----------ETVLASSGT  337 (422)
T ss_pred             ccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCC----------CceeEeccc
Confidence            34667799999999976655 5667899999999987665     4566778899999997          467788889


Q ss_pred             CCcEEEEECCC
Q 036317           82 DGSVYAWSARS   92 (106)
Q Consensus        82 d~~i~~wd~~~   92 (106)
                      |+.+.+||+..
T Consensus       338 D~rl~vWDls~  348 (422)
T KOG0264|consen  338 DRRLNVWDLSR  348 (422)
T ss_pred             CCcEEEEeccc
Confidence            99999999974

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.14  E-value=5.6e-10  Score=86.58  Aligned_cols=91  Identities=22%  Similarity=0.334  Sum_probs=70.5

Q ss_pred             ceeeecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCC---------------------------------------
Q 036317            3 FDIFSDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQ---------------------------------------   43 (106)
Q Consensus         3 ~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~---------------------------------------   43 (106)
                      |+.-+...|.+.|+.+.|+..|+.+++++.||+++.||...                                       
T Consensus       383 fC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~Ifv  462 (893)
T KOG0291|consen  383 FCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFV  462 (893)
T ss_pred             eEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEE
Confidence            55556666677788888888888777777787777777543                                       


Q ss_pred             -----Cce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEEECCCCC----------CCcEEEeCCC
Q 036317           44 -----GTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSARSGK----------EPPVIKWAPG  104 (106)
Q Consensus        44 -----~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd~~~~~----------~v~~i~~sp~  104 (106)
                           |++    .+|.+++.+++|+|++           ..++++|-|.+|++||+-+..          .+..++|.|+
T Consensus       463 WS~qTGqllDiLsGHEgPVs~l~f~~~~-----------~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPd  531 (893)
T KOG0291|consen  463 WSVQTGQLLDILSGHEGPVSGLSFSPDG-----------SLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPD  531 (893)
T ss_pred             EEeecCeeeehhcCCCCcceeeEEcccc-----------CeEEeccccceEEEEEeeccCceeeeEeeccceeEEEEcCC
Confidence                 332    3567777788999999           999999999999999998763          7788888885

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.13  E-value=3.1e-10  Score=82.28  Aligned_cols=86  Identities=22%  Similarity=0.345  Sum_probs=75.0

Q ss_pred             ecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce---eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCC
Q 036317            7 SDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL---PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDG   83 (106)
Q Consensus         7 ~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~---~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~   83 (106)
                      .+.||..+|.+|.|++ ...+.+++.|++|+.||+.++..   ..-..+..++..+|..           +.|++|+.|.
T Consensus       255 tl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~-----------~Ll~~gssdr  322 (423)
T KOG0313|consen  255 TLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLS-----------KLLASGSSDR  322 (423)
T ss_pred             EecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecCcceeEeeccccc-----------ceeeecCCCC
Confidence            4678999999999999 55589999999999999999887   2234466789999999           9999999999


Q ss_pred             cEEEEECCCCC-------------CCcEEEeCCC
Q 036317           84 SVYAWSARSGK-------------EPPVIKWAPG  104 (106)
Q Consensus        84 ~i~~wd~~~~~-------------~v~~i~~sp~  104 (106)
                      .+++||-+++.             +|..++|+|.
T Consensus       323 ~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~  356 (423)
T KOG0313|consen  323 HIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPT  356 (423)
T ss_pred             ceeecCCCCCCCceeEEeeecchhhhhheecCCC
Confidence            99999999876             8889999985

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.13  E-value=6.4e-10  Score=86.82  Aligned_cols=84  Identities=15%  Similarity=0.332  Sum_probs=73.9

Q ss_pred             CCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce-------------------------------------------
Q 036317           10 GDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL-------------------------------------------   46 (106)
Q Consensus        10 ~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~-------------------------------------------   46 (106)
                      .|+++|+.++.+.-++.+++++.+|.+.+||.....+                                           
T Consensus       491 ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR  570 (910)
T KOG1539|consen  491 AHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVR  570 (910)
T ss_pred             cccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhH
Confidence            5567999999999999999999999999999765542                                           


Q ss_pred             --eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEEECCCCC---------CCcEEEeCCC
Q 036317           47 --PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSARSGK---------EPPVIKWAPG  104 (106)
Q Consensus        47 --~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd~~~~~---------~v~~i~~sp~  104 (106)
                        .++.+.+++.+|||||           ++|++++-|++|++||+-++.         ++..++|||+
T Consensus       571 ~f~gh~nritd~~FS~Dg-----------rWlisasmD~tIr~wDlpt~~lID~~~vd~~~~sls~SPn  628 (910)
T KOG1539|consen  571 EFWGHGNRITDMTFSPDG-----------RWLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPN  628 (910)
T ss_pred             HhhccccceeeeEeCCCC-----------cEEEEeecCCcEEEEeccCcceeeeEecCCcceeeEECCC
Confidence              1356778889999999           999999999999999999998         8889999996

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.13  E-value=5.4e-10  Score=80.68  Aligned_cols=84  Identities=19%  Similarity=0.308  Sum_probs=66.3

Q ss_pred             eeecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce--------------------------------------
Q 036317            5 IFSDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL--------------------------------------   46 (106)
Q Consensus         5 ~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~--------------------------------------   46 (106)
                      .+++.+|+..|.++.||-||.+++++..+|.+.||...++..                                      
T Consensus        99 ~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip  178 (399)
T KOG0296|consen   99 AGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIP  178 (399)
T ss_pred             eeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECC
Confidence            467788899999999999999999999999999999877654                                      


Q ss_pred             --------eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEEECCCCCCCcEE
Q 036317           47 --------PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSARSGKEPPVI   99 (106)
Q Consensus        47 --------~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd~~~~~~v~~i   99 (106)
                              .++..++..=.|.|||           +.++++..||+|++|+.++|++...+
T Consensus       179 ~~~~~kv~~Gh~~~ct~G~f~pdG-----------Kr~~tgy~dgti~~Wn~ktg~p~~~~  228 (399)
T KOG0296|consen  179 SQALCKVMSGHNSPCTCGEFIPDG-----------KRILTGYDDGTIIVWNPKTGQPLHKI  228 (399)
T ss_pred             CcceeeEecCCCCCcccccccCCC-----------ceEEEEecCceEEEEecCCCceeEEe
Confidence                    0111222233577777           99999999999999999999944444

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.13  E-value=2.5e-10  Score=80.79  Aligned_cols=89  Identities=19%  Similarity=0.330  Sum_probs=74.8

Q ss_pred             eeecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce--------ec----cCCCcEEEEEecCCcceeeeeeec
Q 036317            5 IFSDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL--------PV----SHNSTLEASFSQHLSLVALSVLIL   72 (106)
Q Consensus         5 ~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~--------~~----~~~~~~~~~fs~d~~~~~~~~~~~   72 (106)
                      .|.+.||...|+.+..+|+|.++++.++|.++++||......        .+    ...-...|+|||++          
T Consensus       209 ~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~----------  278 (338)
T KOG0265|consen  209 LYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNG----------  278 (338)
T ss_pred             eEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCC----------
Confidence            466788889999999999999999999999999999764332        11    12234579999999          


Q ss_pred             ccEEEEecCCCcEEEEECCCCC----------CCcEEEeCCC
Q 036317           73 RSWVLEGSGDGSVYAWSARSGK----------EPPVIKWAPG  104 (106)
Q Consensus        73 ~~~i~t~s~d~~i~~wd~~~~~----------~v~~i~~sp~  104 (106)
                       +++-+|+.|+.+++||..+-.          .|++++|+|.
T Consensus       279 -~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~  319 (338)
T KOG0265|consen  279 -TKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPT  319 (338)
T ss_pred             -CccccccccceEEEeecccccEEEEcCCcceeEEEeeecCC
Confidence             999999999999999998754          8999999996

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.12  E-value=9.7e-11  Score=90.27  Aligned_cols=88  Identities=16%  Similarity=0.231  Sum_probs=75.5

Q ss_pred             eecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecC
Q 036317            6 FSDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSG   81 (106)
Q Consensus         6 ~~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~   81 (106)
                      +...+|...|+.++|+|||++++.++.|.+++|||...|++    ..+.+.+..+.|+|..           -.+++|+.
T Consensus       148 ~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e-----------~Lla~Gs~  216 (825)
T KOG0267|consen  148 HTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLE-----------VLLAPGSS  216 (825)
T ss_pred             eeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchh-----------hhhccCCC
Confidence            44445666799999999999999999999999999999988    3355677778899998           88899999


Q ss_pred             CCcEEEEECCCCC----------CCcEEEeCCC
Q 036317           82 DGSVYAWSARSGK----------EPPVIKWAPG  104 (106)
Q Consensus        82 d~~i~~wd~~~~~----------~v~~i~~sp~  104 (106)
                      |+++++||+++-+          .|++.+|+|.
T Consensus       217 d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~  249 (825)
T KOG0267|consen  217 DRTVRFWDLETFEVISSGKPETDGVRSLAFNPD  249 (825)
T ss_pred             CceeeeeccceeEEeeccCCccCCceeeeecCC
Confidence            9999999999543          8999999986

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.12  E-value=1.8e-10  Score=85.37  Aligned_cols=84  Identities=18%  Similarity=0.314  Sum_probs=70.3

Q ss_pred             CCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce--eccCC-CcEEEEEecCCcceeeeeeecccEEEEecCCCcEE
Q 036317           10 GDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL--PVSHN-STLEASFSQHLSLVALSVLILRSWVLEGSGDGSVY   86 (106)
Q Consensus        10 ~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~--~~~~~-~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~   86 (106)
                      +|..+|.++.|+++|..+++++.|+.+++||.++|++  ..+.+ .+..+.|.||+          .+.+++|..|+.|+
T Consensus       256 gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~----------~n~fl~G~sd~ki~  325 (503)
T KOG0282|consen  256 GHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDN----------QNIFLVGGSDKKIR  325 (503)
T ss_pred             cchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEecCCCceeeecCCCC----------CcEEEEecCCCcEE
Confidence            5566999999999999999999999999999999998  33333 44678999998          45788899999999


Q ss_pred             EEECCCCC----------CCcEEEeCC
Q 036317           87 AWSARSGK----------EPPVIKWAP  103 (106)
Q Consensus        87 ~wd~~~~~----------~v~~i~~sp  103 (106)
                      .||+++++          .|..|.|=|
T Consensus       326 ~wDiRs~kvvqeYd~hLg~i~~i~F~~  352 (503)
T KOG0282|consen  326 QWDIRSGKVVQEYDRHLGAILDITFVD  352 (503)
T ss_pred             EEeccchHHHHHHHhhhhheeeeEEcc
Confidence            99999998          566666643

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.12  E-value=8e-10  Score=81.41  Aligned_cols=84  Identities=17%  Similarity=0.202  Sum_probs=72.0

Q ss_pred             CCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce--e-ccC---CCcEEEEEecCCcceeeeeeecccEEEEecCCC
Q 036317           10 GDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL--P-VSH---NSTLEASFSQHLSLVALSVLILRSWVLEGSGDG   83 (106)
Q Consensus        10 ~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~--~-~~~---~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~   83 (106)
                      -|..+|+.+..+|.|+|++++++|+...+.|..+|..  . .+.   -...+..|+|||           ..+.+|..|+
T Consensus       301 ~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDg-----------Lifgtgt~d~  369 (506)
T KOG0289|consen  301 PHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDG-----------LIFGTGTPDG  369 (506)
T ss_pred             cccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCc-----------eEEeccCCCc
Confidence            3456899999999999999999999999999999987  1 121   235679999999           9999999999


Q ss_pred             cEEEEECCCCC----------CCcEEEeCCC
Q 036317           84 SVYAWSARSGK----------EPPVIKWAPG  104 (106)
Q Consensus        84 ~i~~wd~~~~~----------~v~~i~~sp~  104 (106)
                      .+++||++++.          +|..|+|+-+
T Consensus       370 ~vkiwdlks~~~~a~Fpght~~vk~i~FsEN  400 (506)
T KOG0289|consen  370 VVKIWDLKSQTNVAKFPGHTGPVKAISFSEN  400 (506)
T ss_pred             eEEEEEcCCccccccCCCCCCceeEEEeccC
Confidence            99999999876          8999999754

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.12  E-value=6.2e-10  Score=85.90  Aligned_cols=77  Identities=14%  Similarity=0.215  Sum_probs=70.7

Q ss_pred             ecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCC
Q 036317            7 SDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGD   82 (106)
Q Consensus         7 ~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d   82 (106)
                      .+.||+-.|.+|+|+|..+.+++++.|.+++||.+.++..    .+|...+..+.|-.+|           +++++++.|
T Consensus       500 vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~-----------~qliS~~ad  568 (775)
T KOG0319|consen  500 VLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNG-----------KQLISAGAD  568 (775)
T ss_pred             EeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCC-----------cEEEeccCC
Confidence            3468888999999999999999999999999999998876    5677788899999999           999999999


Q ss_pred             CcEEEEECCCCC
Q 036317           83 GSVYAWSARSGK   94 (106)
Q Consensus        83 ~~i~~wd~~~~~   94 (106)
                      |-+++|++++++
T Consensus       569 GliKlWnikt~e  580 (775)
T KOG0319|consen  569 GLIKLWNIKTNE  580 (775)
T ss_pred             CcEEEEeccchh
Confidence            999999999987

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.12  E-value=2e-10  Score=86.04  Aligned_cols=89  Identities=12%  Similarity=0.219  Sum_probs=70.7

Q ss_pred             eecCCCCCCeeEEEECCCC-CeEEEEeCCCeEEEEEcCCCce----------eccCCCcEEEEEecCCcceeeeeeeccc
Q 036317            6 FSDGGDVSDANEVKLSNDG-RLMLLTTLEGHIHVLHSFQGTL----------PVSHNSTLEASFSQHLSLVALSVLILRS   74 (106)
Q Consensus         6 ~~~~~~~~~v~~v~~spdg-~~l~~~~~~~~i~l~d~~~~~~----------~~~~~~~~~~~fs~d~~~~~~~~~~~~~   74 (106)
                      ++..||...+++.+|+|+. +.+++++.|+++++||+..-+.          ....-.++.|.|++||           +
T Consensus       262 ~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg-----------~  330 (641)
T KOG0772|consen  262 YNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDG-----------K  330 (641)
T ss_pred             hccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCc-----------c
Confidence            4556777799999999985 4567889999999999876543          1123356789999999           9


Q ss_pred             EEEEecCCCcEEEEECCCCC---------------CCcEEEeCCCC
Q 036317           75 WVLEGSGDGSVYAWSARSGK---------------EPPVIKWAPGS  105 (106)
Q Consensus        75 ~i~t~s~d~~i~~wd~~~~~---------------~v~~i~~sp~~  105 (106)
                      .|++|..||+|++|+.....               .|.||+||++-
T Consensus       331 ~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg  376 (641)
T KOG0772|consen  331 LIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDG  376 (641)
T ss_pred             hhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEecccc
Confidence            99999999999999974322               89999999863

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.12  E-value=4.1e-10  Score=78.43  Aligned_cols=71  Identities=15%  Similarity=0.208  Sum_probs=65.0

Q ss_pred             CCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce-----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEE
Q 036317           13 SDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL-----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYA   87 (106)
Q Consensus        13 ~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~-----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~   87 (106)
                      ..|.+..++|+...+++++.|..++-||..+|+.     .++++++-++.|+|||           ...++||+||+|++
T Consensus       225 ~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdG-----------E~yAsGSEDGTirl  293 (334)
T KOG0278|consen  225 CNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDG-----------ELYASGSEDGTIRL  293 (334)
T ss_pred             cccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCC-----------ceeeccCCCceEEE
Confidence            4788999999999999999999999999999876     5677888899999999           99999999999999


Q ss_pred             EECCCCC
Q 036317           88 WSARSGK   94 (106)
Q Consensus        88 wd~~~~~   94 (106)
                      |++..++
T Consensus       294 WQt~~~~  300 (334)
T KOG0278|consen  294 WQTTPGK  300 (334)
T ss_pred             EEecCCC
Confidence            9998776

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.12  E-value=3.4e-10  Score=80.83  Aligned_cols=75  Identities=17%  Similarity=0.368  Sum_probs=66.1

Q ss_pred             CCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce-----eccC-CCcEEEEEecCCcceeeeeeecccEEEEecCC
Q 036317            9 GGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL-----PVSH-NSTLEASFSQHLSLVALSVLILRSWVLEGSGD   82 (106)
Q Consensus         9 ~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~-----~~~~-~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d   82 (106)
                      .+|.+.|+.|.+|+.|+..++++.||.|+|||..+++.     ..|. ..++++.|+.++           +||++.+.|
T Consensus       258 ~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~-----------kyiLsSG~D  326 (430)
T KOG0640|consen  258 DQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNG-----------KYILSSGKD  326 (430)
T ss_pred             cccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCC-----------eEEeecCCc
Confidence            35567999999999999999999999999999998887     2232 356789999999           999999999


Q ss_pred             CcEEEEECCCCC
Q 036317           83 GSVYAWSARSGK   94 (106)
Q Consensus        83 ~~i~~wd~~~~~   94 (106)
                      ..+++|++.+|+
T Consensus       327 S~vkLWEi~t~R  338 (430)
T KOG0640|consen  327 STVKLWEISTGR  338 (430)
T ss_pred             ceeeeeeecCCc
Confidence            999999999987

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.11  E-value=4.4e-10  Score=85.86  Aligned_cols=91  Identities=21%  Similarity=0.229  Sum_probs=76.2

Q ss_pred             CceeeecCCCCCCeeEEEECCCC--CeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccE
Q 036317            2 PFDIFSDGGDVSDANEVKLSNDG--RLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSW   75 (106)
Q Consensus         2 ~~~~~~~~~~~~~v~~v~~spdg--~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~   75 (106)
                      |...|++.+|...|+++.+=+.|  -|+++++.|.++++||.++...    .+|..-+..+.|+|.-           ..
T Consensus       173 ~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~l-----------pi  241 (794)
T KOG0276|consen  173 PHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPEL-----------PI  241 (794)
T ss_pred             CCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCC-----------cE
Confidence            55678888999999999997654  5899999999999999998876    5566677789999999           99


Q ss_pred             EEEecCCCcEEEEECCCCC----------CCcEEEeCC
Q 036317           76 VLEGSGDGSVYAWSARSGK----------EPPVIKWAP  103 (106)
Q Consensus        76 i~t~s~d~~i~~wd~~~~~----------~v~~i~~sp  103 (106)
                      |+|||+||+++||+..+=+          .+.||+-.+
T Consensus       242 iisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k  279 (794)
T KOG0276|consen  242 IISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHK  279 (794)
T ss_pred             EEEecCCccEEEecCcceehhhhhhcCCceEEEEeecC
Confidence            9999999999999987744          666666544

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.11  E-value=3.4e-10  Score=81.36  Aligned_cols=74  Identities=16%  Similarity=0.305  Sum_probs=68.2

Q ss_pred             CCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcE
Q 036317           10 GDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSV   85 (106)
Q Consensus        10 ~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i   85 (106)
                      .|...|.++.||.|+..+++++.|.++++--..+|+.    .+|...+..+.|++||           ..|+++|.||+|
T Consensus       304 AHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG-----------~~iisaSsDgtv  372 (508)
T KOG0275|consen  304 AHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDG-----------HHIISASSDGTV  372 (508)
T ss_pred             hhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCC-----------CeEEEecCCccE
Confidence            4456899999999999999999999999999999987    6677788899999999           999999999999


Q ss_pred             EEEECCCCC
Q 036317           86 YAWSARSGK   94 (106)
Q Consensus        86 ~~wd~~~~~   94 (106)
                      ++|+.++++
T Consensus       373 kvW~~Ktte  381 (508)
T KOG0275|consen  373 KVWHGKTTE  381 (508)
T ss_pred             EEecCcchh
Confidence            999999987

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.10  E-value=3.2e-10  Score=81.14  Aligned_cols=77  Identities=17%  Similarity=0.214  Sum_probs=68.3

Q ss_pred             ecCCCCCCeeEEEECCCC-CeEEEEeCCCeEEEEEcCCCce-------eccCCCcEEEEEecCCcceeeeeeecccEEEE
Q 036317            7 SDGGDVSDANEVKLSNDG-RLMLLTTLEGHIHVLHSFQGTL-------PVSHNSTLEASFSQHLSLVALSVLILRSWVLE   78 (106)
Q Consensus         7 ~~~~~~~~v~~v~~spdg-~~l~~~~~~~~i~l~d~~~~~~-------~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t   78 (106)
                      .+.+|.+.|+.+.+.|+. +++++++.|..+++||++++..       .+|...+.++.|+++|           .+|++
T Consensus       130 ~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~g-----------d~i~S  198 (385)
T KOG1034|consen  130 NYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDG-----------DRIAS  198 (385)
T ss_pred             ceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCC-----------Ceeec
Confidence            345777899999999985 7889999999999999999876       5677889999999999           99999


Q ss_pred             ecCCCcEEEEECCCCC
Q 036317           79 GSGDGSVYAWSARSGK   94 (106)
Q Consensus        79 ~s~d~~i~~wd~~~~~   94 (106)
                      ++-|.++++|++...+
T Consensus       199 cGmDhslk~W~l~~~~  214 (385)
T KOG1034|consen  199 CGMDHSLKLWRLNVKE  214 (385)
T ss_pred             cCCcceEEEEecChhH
Confidence            9999999999998654

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.07  E-value=7.4e-10  Score=83.29  Aligned_cols=88  Identities=13%  Similarity=0.217  Sum_probs=74.2

Q ss_pred             cCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEe--cC
Q 036317            8 DGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEG--SG   81 (106)
Q Consensus         8 ~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~--s~   81 (106)
                      +.+|..+|..++|++|++++++++.|+.+.|||..+-+.    ..|.+.+.+++|+|-.          +..||+|  +.
T Consensus       297 ~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q----------~~lLAsGGGs~  366 (484)
T KOG0305|consen  297 LQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQ----------SGLLATGGGSA  366 (484)
T ss_pred             hhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCc----------cCceEEcCCCc
Confidence            456788999999999999999999999999999954443    5577888899999875          2456665  56


Q ss_pred             CCcEEEEECCCCC---------CCcEEEeCCCC
Q 036317           82 DGSVYAWSARSGK---------EPPVIKWAPGS  105 (106)
Q Consensus        82 d~~i~~wd~~~~~---------~v~~i~~sp~~  105 (106)
                      |+.|++||..+|+         .|.+|.|+|.+
T Consensus       367 D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~  399 (484)
T KOG0305|consen  367 DRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKY  399 (484)
T ss_pred             ccEEEEEEcCCCcEecccccCCceeeEEEcCCC
Confidence            9999999999988         89999999976

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.07  E-value=6.7e-10  Score=81.05  Aligned_cols=85  Identities=20%  Similarity=0.336  Sum_probs=70.7

Q ss_pred             cCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcC--------C-----Cce-------eccCCCcEEEEEecCCcceee
Q 036317            8 DGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSF--------Q-----GTL-------PVSHNSTLEASFSQHLSLVAL   67 (106)
Q Consensus         8 ~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~--------~-----~~~-------~~~~~~~~~~~fs~d~~~~~~   67 (106)
                      +..|+..|+.+.|+|+|+.+++++.++++.+|-..        +     .+.       ..+...+..++|+||+     
T Consensus        61 Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~-----  135 (434)
T KOG1009|consen   61 LSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDS-----  135 (434)
T ss_pred             ccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCC-----
Confidence            34566799999999999999999999999999754        2     100       2344567789999999     


Q ss_pred             eeeecccEEEEecCCCcEEEEECCCCC----------CCcEEEeCC
Q 036317           68 SVLILRSWVLEGSGDGSVYAWSARSGK----------EPPVIKWAP  103 (106)
Q Consensus        68 ~~~~~~~~i~t~s~d~~i~~wd~~~~~----------~v~~i~~sp  103 (106)
                            .++++++-|.++++||+..|+          -++.++|.|
T Consensus       136 ------~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDp  175 (434)
T KOG1009|consen  136 ------NFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDP  175 (434)
T ss_pred             ------ceeeeeeccceEEEEEeccceeEeeccccccccceeecch
Confidence                  999999999999999999998          677778776

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.05  E-value=2.5e-09  Score=75.82  Aligned_cols=90  Identities=18%  Similarity=0.271  Sum_probs=76.1

Q ss_pred             ceeeecCCC-CCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce---eccCCCcEEEEEecCCcceeeeeeecccEEEE
Q 036317            3 FDIFSDGGD-VSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL---PVSHNSTLEASFSQHLSLVALSVLILRSWVLE   78 (106)
Q Consensus         3 ~~~~~~~~~-~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~---~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t   78 (106)
                      ...++++.. ...|++|.|+|.+..|++++.|+++++||.....+   -.+.++++.|+|.++            ..+++
T Consensus         3 ~~~~~l~npP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~------------~~~~~   70 (323)
T KOG1036|consen    3 PNEFELENPPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFADE------------STIVT   70 (323)
T ss_pred             ccccccCCCChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccCC------------ceEEE
Confidence            456777665 45899999999999999999999999999877655   346678889999975            67899


Q ss_pred             ecCCCcEEEEECCCCC---------CCcEEEeCCC
Q 036317           79 GSGDGSVYAWSARSGK---------EPPVIKWAPG  104 (106)
Q Consensus        79 ~s~d~~i~~wd~~~~~---------~v~~i~~sp~  104 (106)
                      |+-||.|+++|+.+++         .++||.++|.
T Consensus        71 G~~dg~vr~~Dln~~~~~~igth~~~i~ci~~~~~  105 (323)
T KOG1036|consen   71 GGLDGQVRRYDLNTGNEDQIGTHDEGIRCIEYSYE  105 (323)
T ss_pred             eccCceEEEEEecCCcceeeccCCCceEEEEeecc
Confidence            9999999999999987         8899988753

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.04  E-value=1.4e-09  Score=79.93  Aligned_cols=87  Identities=16%  Similarity=0.216  Sum_probs=70.6

Q ss_pred             CCCCCCeeEEEECCC-CCeEEEEeCCCeEEEEEcCCC--ce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecC
Q 036317            9 GGDVSDANEVKLSND-GRLMLLTTLEGHIHVLHSFQG--TL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSG   81 (106)
Q Consensus         9 ~~~~~~v~~v~~spd-g~~l~~~~~~~~i~l~d~~~~--~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~   81 (106)
                      .+|...|+.++|+|. ...+++++.|+.+.|||.+++  +.    ..+.+.+.++.|.|-+          ...|||||.
T Consensus       224 ~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~----------~~ilAT~S~  293 (422)
T KOG0264|consen  224 SGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFN----------EFILATGSA  293 (422)
T ss_pred             ecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCC----------CceEEeccC
Confidence            456678999999986 455578889999999999964  22    3456677889999877          256789999


Q ss_pred             CCcEEEEECCCCC-----------CCcEEEeCCCC
Q 036317           82 DGSVYAWSARSGK-----------EPPVIKWAPGS  105 (106)
Q Consensus        82 d~~i~~wd~~~~~-----------~v~~i~~sp~~  105 (106)
                      |++|++||++..+           .|.++.|||..
T Consensus       294 D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~  328 (422)
T KOG0264|consen  294 DKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHN  328 (422)
T ss_pred             CCcEEEeechhcccCceeccCCCcceEEEEeCCCC
Confidence            9999999999866           89999999975

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.04  E-value=5.8e-10  Score=80.69  Aligned_cols=74  Identities=20%  Similarity=0.393  Sum_probs=63.0

Q ss_pred             CCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce-----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCc
Q 036317           10 GDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL-----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGS   84 (106)
Q Consensus        10 ~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~-----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~   84 (106)
                      +|.+.|.+|+|||.|+-+++++.|++|+|+.+..+.-     ......+.++.||.|.           +||++||.|+.
T Consensus       270 dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Ds-----------kyi~SGSdd~n  338 (433)
T KOG0268|consen  270 DHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDS-----------KYIISGSDDGN  338 (433)
T ss_pred             ccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccc-----------cEEEecCCCcc
Confidence            4566899999999999999999999999999987765     2223356789999999           99999999999


Q ss_pred             EEEEECCCCC
Q 036317           85 VYAWSARSGK   94 (106)
Q Consensus        85 i~~wd~~~~~   94 (106)
                      |++|...-.+
T Consensus       339 vRlWka~Ase  348 (433)
T KOG0268|consen  339 VRLWKAKASE  348 (433)
T ss_pred             eeeeecchhh
Confidence            9999876443

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.03  E-value=2.7e-09  Score=74.35  Aligned_cols=88  Identities=17%  Similarity=0.249  Sum_probs=71.7

Q ss_pred             ecCCCCCCeeEEEECCC-CCeEEEEeCCCeEEEEEcCC-Cce---eccCCCcEEEEEecCCcceeeeeeecccEEEEecC
Q 036317            7 SDGGDVSDANEVKLSND-GRLMLLTTLEGHIHVLHSFQ-GTL---PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSG   81 (106)
Q Consensus         7 ~~~~~~~~v~~v~~spd-g~~l~~~~~~~~i~l~d~~~-~~~---~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~   81 (106)
                      +..+|.+-|...+|||. ++.+++++.|+++++||+.. |+.   +.+...+..|.|+.-.          +..++||+-
T Consensus       142 Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~----------~~vl~Tg~v  211 (311)
T KOG0277|consen  142 TFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYN----------HNVLATGGV  211 (311)
T ss_pred             eecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccC----------CcEEEecCC
Confidence            34567778999999995 78889999999999999764 443   3455567789999665          378899999


Q ss_pred             CCcEEEEECCCCC-----------CCcEEEeCCC
Q 036317           82 DGSVYAWSARSGK-----------EPPVIKWAPG  104 (106)
Q Consensus        82 d~~i~~wd~~~~~-----------~v~~i~~sp~  104 (106)
                      |+.|++||++.-+           .|+.++|||-
T Consensus       212 d~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph  245 (311)
T KOG0277|consen  212 DNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPH  245 (311)
T ss_pred             CceEEEEehhhccccceeecCCceEEEEEecCcc
Confidence            9999999999766           8899999984

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.03  E-value=9.1e-10  Score=86.83  Aligned_cols=78  Identities=14%  Similarity=0.164  Sum_probs=72.4

Q ss_pred             eeeecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEe
Q 036317            4 DIFSDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEG   79 (106)
Q Consensus         4 ~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~   79 (106)
                      +.|++.||-.-|+.+.|++.--++++++.|.+|+|||.++++.    .+|..+++++.|+|..           ..|+++
T Consensus        85 clftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptE-----------DlIVSa  153 (1202)
T KOG0292|consen   85 CLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTE-----------DLIVSA  153 (1202)
T ss_pred             ehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCcc-----------ceEEEe
Confidence            5688889889999999999999999999999999999999987    6788889999999999           999999


Q ss_pred             cCCCcEEEEECCC
Q 036317           80 SGDGSVYAWSARS   92 (106)
Q Consensus        80 s~d~~i~~wd~~~   92 (106)
                      |-|.+|++||+.-
T Consensus       154 SLDQTVRVWDisG  166 (1202)
T KOG0292|consen  154 SLDQTVRVWDISG  166 (1202)
T ss_pred             cccceEEEEeecc
Confidence            9999999999864

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.02  E-value=2.8e-09  Score=82.74  Aligned_cols=82  Identities=21%  Similarity=0.306  Sum_probs=74.5

Q ss_pred             CCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEE
Q 036317           13 SDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAW   88 (106)
Q Consensus        13 ~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~w   88 (106)
                      ..|-++++||||++++++--|.++++|-+.+-++    -+|.-++.++.+|||+           +.|+|||.|.+|++|
T Consensus       509 ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DS-----------klivTgSADKnVKiW  577 (888)
T KOG0306|consen  509 DDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDS-----------KLIVTGSADKNVKIW  577 (888)
T ss_pred             ccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCc-----------CeEEeccCCCceEEe
Confidence            4789999999999999999999999999888877    5677788999999999           999999999999999


Q ss_pred             ECCCCC----------CCcEEEeCCCC
Q 036317           89 SARSGK----------EPPVIKWAPGS  105 (106)
Q Consensus        89 d~~~~~----------~v~~i~~sp~~  105 (106)
                      =++-|.          .|-++.|-|+.
T Consensus       578 GLdFGDCHKS~fAHdDSvm~V~F~P~~  604 (888)
T KOG0306|consen  578 GLDFGDCHKSFFAHDDSVMSVQFLPKT  604 (888)
T ss_pred             ccccchhhhhhhcccCceeEEEEcccc
Confidence            998776          78899998864

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.02  E-value=3.9e-09  Score=71.15  Aligned_cols=74  Identities=18%  Similarity=0.336  Sum_probs=57.5

Q ss_pred             CCCeeEEEECCCCCeEEEEeCC---CeEEEEEcCCCce--eccCCCcEEEEEecCCcceeeeeeecccEEEEecC-----
Q 036317           12 VSDANEVKLSNDGRLMLLTTLE---GHIHVLHSFQGTL--PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSG-----   81 (106)
Q Consensus        12 ~~~v~~v~~spdg~~l~~~~~~---~~i~l~d~~~~~~--~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~-----   81 (106)
                      ...++.+.|||+|+++++++.+   |.+.+||..+.+.  ...+.....+.|||||           ++++++..     
T Consensus       100 ~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~~t~~~WsPdG-----------r~~~ta~t~~r~~  168 (194)
T PF08662_consen  100 TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHSDATDVEWSPDG-----------RYLATATTSPRLR  168 (194)
T ss_pred             CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccCcEEEEEEcCCC-----------CEEEEEEecccee
Confidence            3578899999999999998744   6799999997776  3344456789999999           77777643     


Q ss_pred             -CCcEEEEECCCCCCCc
Q 036317           82 -DGSVYAWSARSGKEPP   97 (106)
Q Consensus        82 -d~~i~~wd~~~~~~v~   97 (106)
                       |..++||+.. |+.+.
T Consensus       169 ~dng~~Iw~~~-G~~l~  184 (194)
T PF08662_consen  169 VDNGFKIWSFQ-GRLLY  184 (194)
T ss_pred             ccccEEEEEec-CeEeE
Confidence             6789999985 65333

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.01  E-value=8.8e-10  Score=79.76  Aligned_cols=81  Identities=16%  Similarity=0.258  Sum_probs=64.3

Q ss_pred             CCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCc
Q 036317            9 GGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGS   84 (106)
Q Consensus         9 ~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~   84 (106)
                      .||...|+.++|+.  +|+++++.|.++++|+..+++.    .+|+..+  ++.--.+           ++|++||.|.+
T Consensus       317 vGHrAaVNvVdfd~--kyIVsASgDRTikvW~~st~efvRtl~gHkRGI--AClQYr~-----------rlvVSGSSDnt  381 (499)
T KOG0281|consen  317 VGHRAAVNVVDFDD--KYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGI--ACLQYRD-----------RLVVSGSSDNT  381 (499)
T ss_pred             hhhhhheeeecccc--ceEEEecCCceEEEEeccceeeehhhhcccccc--eehhccC-----------eEEEecCCCce
Confidence            46677899998875  4999999999999999999987    2233233  2233467           89999999999


Q ss_pred             EEEEECCCCC----------CCcEEEeCCC
Q 036317           85 VYAWSARSGK----------EPPVIKWAPG  104 (106)
Q Consensus        85 i~~wd~~~~~----------~v~~i~~sp~  104 (106)
                      |++||++.|+          -|+|++|+.+
T Consensus       382 IRlwdi~~G~cLRvLeGHEeLvRciRFd~k  411 (499)
T KOG0281|consen  382 IRLWDIECGACLRVLEGHEELVRCIRFDNK  411 (499)
T ss_pred             EEEEeccccHHHHHHhchHHhhhheeecCc
Confidence            9999999997          7888888764

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.01  E-value=3.3e-09  Score=83.49  Aligned_cols=81  Identities=16%  Similarity=0.322  Sum_probs=73.8

Q ss_pred             CeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEEE
Q 036317           14 DANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWS   89 (106)
Q Consensus        14 ~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd   89 (106)
                      +++.++|+-+|+++++++.|-.|++.+..+...    .++.+++..+.|+|.+           .++|+.+.||.|++||
T Consensus        98 p~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~-----------~fLAvss~dG~v~iw~  166 (933)
T KOG1274|consen   98 PIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKG-----------NFLAVSSCDGKVQIWD  166 (933)
T ss_pred             cceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCC-----------CEEEEEecCceEEEEE
Confidence            789999999999999999999999999987654    6788899999999999           9999999999999999


Q ss_pred             CCCCC------------------CCcEEEeCCCC
Q 036317           90 ARSGK------------------EPPVIKWAPGS  105 (106)
Q Consensus        90 ~~~~~------------------~v~~i~~sp~~  105 (106)
                      ++++.                  .+..++|+|+.
T Consensus       167 ~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~  200 (933)
T KOG1274|consen  167 LQDGILSKTLTGVDKDNEFILSRICTRLAWHPKG  200 (933)
T ss_pred             cccchhhhhcccCCccccccccceeeeeeecCCC
Confidence            99987                  56778999984

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.00  E-value=4.4e-09  Score=74.64  Aligned_cols=80  Identities=14%  Similarity=0.227  Sum_probs=66.3

Q ss_pred             CCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce---eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEE
Q 036317           11 DVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL---PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYA   87 (106)
Q Consensus        11 ~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~---~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~   87 (106)
                      +.++|-++.|+.||.++++++-|+++++||+.+++.   -.|.+++..+.|-+...        + ..|+|||=|.+++.
T Consensus        71 ~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~--------~-~cl~TGSWDKTlKf  141 (347)
T KOG0647|consen   71 HDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQVAAHDAPVKTCHWVPGMN--------Y-QCLVTGSWDKTLKF  141 (347)
T ss_pred             cCCCeEEEEEccCCceEEeeccCCceEEEEccCCCeeeeeecccceeEEEEecCCC--------c-ceeEecccccceee
Confidence            356999999999999999999999999999999987   33666777788876650        0 48999999999999


Q ss_pred             EECCCCCCCcEE
Q 036317           88 WSARSGKEPPVI   99 (106)
Q Consensus        88 wd~~~~~~v~~i   99 (106)
                      ||++..+++..+
T Consensus       142 WD~R~~~pv~t~  153 (347)
T KOG0647|consen  142 WDTRSSNPVATL  153 (347)
T ss_pred             cccCCCCeeeee
Confidence            999987744443

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.00  E-value=4.6e-09  Score=74.79  Aligned_cols=85  Identities=18%  Similarity=0.220  Sum_probs=69.9

Q ss_pred             CCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCc--e------eccCCCcEEEEEecC--CcceeeeeeecccEEEEe
Q 036317           10 GDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGT--L------PVSHNSTLEASFSQH--LSLVALSVLILRSWVLEG   79 (106)
Q Consensus        10 ~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~--~------~~~~~~~~~~~fs~d--~~~~~~~~~~~~~~i~t~   79 (106)
                      +|+.-|.++.|++.|+.+++++.|++++|||..+..  .      +.+.+++..+.|.+-  |           +.|+++
T Consensus        11 ~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfG-----------qvvA~c   79 (361)
T KOG2445|consen   11 GHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFG-----------QVVATC   79 (361)
T ss_pred             CCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCcccc-----------ceEEEE
Confidence            556689999999999999999999999999965433  2      557788888888743  6           999999


Q ss_pred             cCCCcEEEEECCCCC-------------------CCcEEEeCCCC
Q 036317           80 SGDGSVYAWSARSGK-------------------EPPVIKWAPGS  105 (106)
Q Consensus        80 s~d~~i~~wd~~~~~-------------------~v~~i~~sp~~  105 (106)
                      |.|+++.||+-+..+                   .|..++|.|..
T Consensus        80 S~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~h  124 (361)
T KOG2445|consen   80 SYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKH  124 (361)
T ss_pred             ecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchh
Confidence            999999999873211                   78888999875

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.99  E-value=4.2e-09  Score=79.29  Aligned_cols=83  Identities=18%  Similarity=0.292  Sum_probs=68.2

Q ss_pred             CCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce---------------------------------------------
Q 036317           12 VSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL---------------------------------------------   46 (106)
Q Consensus        12 ~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~---------------------------------------------   46 (106)
                      ...|+++.|+++|.+|+++..++.+.|||..+.+.                                             
T Consensus       217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~~~~lssGsr~~~I~~~dvR~~~~~~~~  296 (484)
T KOG0305|consen  217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWNSSVLSSGSRDGKILNHDVRISQHVVST  296 (484)
T ss_pred             CCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEeccCceEEEecCCCcEEEEEEecchhhhhh
Confidence            56899999999999999999999999999654332                                             


Q ss_pred             -eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEEECCCCC----------CCcEEEeCCCC
Q 036317           47 -PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSARSGK----------EPPVIKWAPGS  105 (106)
Q Consensus        47 -~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd~~~~~----------~v~~i~~sp~~  105 (106)
                       ..|...++...|++|+           +++++|+-|+.+.|||..+.+          .|..++|+|-.
T Consensus       297 ~~~H~qeVCgLkws~d~-----------~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q  355 (484)
T KOG0305|consen  297 LQGHRQEVCGLKWSPDG-----------NQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQ  355 (484)
T ss_pred             hhcccceeeeeEECCCC-----------CeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCc
Confidence             0123345667899999           999999999999999996544          89999999853

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=98.98  E-value=2.4e-09  Score=74.87  Aligned_cols=86  Identities=22%  Similarity=0.375  Sum_probs=70.5

Q ss_pred             CCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce------eccCCCcEEEEEecCCcceeeeeeecccEEEEecCC
Q 036317            9 GGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL------PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGD   82 (106)
Q Consensus         9 ~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~------~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d   82 (106)
                      .++.+.+.+|+|+-+|.++++++.|+++.+|+++.++.      .++.+.+..++|+|..          ...+++++.|
T Consensus        17 ~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~----------~d~~atas~d   86 (313)
T KOG1407|consen   17 QGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKH----------PDLFATASGD   86 (313)
T ss_pred             hhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCC----------CcceEEecCC
Confidence            35567999999999999999999999999999987765      4566677778888665          2678999999


Q ss_pred             CcEEEEECCCCC---------CCcEEEeCCC
Q 036317           83 GSVYAWSARSGK---------EPPVIKWAPG  104 (106)
Q Consensus        83 ~~i~~wd~~~~~---------~v~~i~~sp~  104 (106)
                      .+|++||.+.++         .-..+.|+|.
T Consensus        87 k~ir~wd~r~~k~~~~i~~~~eni~i~wsp~  117 (313)
T KOG1407|consen   87 KTIRIWDIRSGKCTARIETKGENINITWSPD  117 (313)
T ss_pred             ceEEEEEeccCcEEEEeeccCcceEEEEcCC
Confidence            999999999998         3345567664

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=98.98  E-value=1.8e-09  Score=78.44  Aligned_cols=81  Identities=21%  Similarity=0.255  Sum_probs=69.3

Q ss_pred             CCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce-------eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcE
Q 036317           13 SDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL-------PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSV   85 (106)
Q Consensus        13 ~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~-------~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i   85 (106)
                      ..+++++.+|..+.+++++.|..+++||..++.-       .+|++.+.++.|+|..          ...+++|+.|+++
T Consensus       301 ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~----------~~~~~S~S~D~t~  370 (423)
T KOG0313|consen  301 KSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTN----------EFQLVSGSYDNTV  370 (423)
T ss_pred             cceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCC----------ceEEEEEecCCeE
Confidence            3789999999999999999999999999887643       5678888899999988          3568899999999


Q ss_pred             EEEECCCCC-----------CCcEEEeCC
Q 036317           86 YAWSARSGK-----------EPPVIKWAP  103 (106)
Q Consensus        86 ~~wd~~~~~-----------~v~~i~~sp  103 (106)
                      ++||+++.+           .|-+++|+.
T Consensus       371 klWDvRS~k~plydI~~h~DKvl~vdW~~  399 (423)
T KOG0313|consen  371 KLWDVRSTKAPLYDIAGHNDKVLSVDWNE  399 (423)
T ss_pred             EEEEeccCCCcceeeccCCceEEEEeccC
Confidence            999999876           666777754

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=98.97  E-value=2e-09  Score=78.85  Aligned_cols=65  Identities=23%  Similarity=0.360  Sum_probs=58.2

Q ss_pred             CeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce------eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEE
Q 036317           14 DANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL------PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYA   87 (106)
Q Consensus        14 ~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~------~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~   87 (106)
                      .++.+.||||+.|+++|+.|+.++||+..++++      ...+..+.+++|+|.|           ..+++++.++.+.+
T Consensus       389 DwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG-----------~~Llsadk~~~v~l  457 (459)
T KOG0288|consen  389 DWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSG-----------SGLLSADKQKAVTL  457 (459)
T ss_pred             ccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCC-----------chhhcccCCcceEe
Confidence            689999999999999999999999999999998      2233357889999999           99999999999999


Q ss_pred             EE
Q 036317           88 WS   89 (106)
Q Consensus        88 wd   89 (106)
                      |.
T Consensus       458 W~  459 (459)
T KOG0288|consen  458 WT  459 (459)
T ss_pred             cC
Confidence            93

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=98.97  E-value=3.9e-09  Score=73.39  Aligned_cols=70  Identities=19%  Similarity=0.266  Sum_probs=59.6

Q ss_pred             CeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEEE
Q 036317           14 DANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWS   89 (106)
Q Consensus        14 ~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd   89 (106)
                      +|+++-+.|..+-++.++.|+.++-||+++|+.    ++|..++-.++--...           ..|++|++||++++||
T Consensus       116 eINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~-----------~qilsG~EDGtvRvWd  184 (325)
T KOG0649|consen  116 EINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNAN-----------GQILSGAEDGTVRVWD  184 (325)
T ss_pred             ccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccC-----------cceeecCCCccEEEEe
Confidence            899999999988888888999999999999998    5566666555553444           5789999999999999


Q ss_pred             CCCCC
Q 036317           90 ARSGK   94 (106)
Q Consensus        90 ~~~~~   94 (106)
                      .++++
T Consensus       185 ~kt~k  189 (325)
T KOG0649|consen  185 TKTQK  189 (325)
T ss_pred             ccccc
Confidence            99998

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=98.96  E-value=8.2e-09  Score=76.39  Aligned_cols=92  Identities=18%  Similarity=0.209  Sum_probs=56.9

Q ss_pred             CCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceee---------------------
Q 036317           13 SDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVAL---------------------   67 (106)
Q Consensus        13 ~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~---------------------   67 (106)
                      ++|.+++-+|+|.++++++-.+.+++|.+.+|++    ..|.-.++.+.|+-||++++-                     
T Consensus        82 g~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~  161 (476)
T KOG0646|consen   82 GPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADND  161 (476)
T ss_pred             cceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccC
Confidence            4566666666666666666666666666666665    334444555666666655441                     


Q ss_pred             ---------------------eeeecccEEEEecCCCcEEEEECCCCC---------CCcEEEeCCC
Q 036317           68 ---------------------SVLILRSWVLEGSGDGSVYAWSARSGK---------EPPVIKWAPG  104 (106)
Q Consensus        68 ---------------------~~~~~~~~i~t~s~d~~i~~wd~~~~~---------~v~~i~~sp~  104 (106)
                                           ..-....+|+|+|+|.+|++||+..|.         .+.++..+|.
T Consensus       162 ~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpa  228 (476)
T KOG0646|consen  162 HSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPA  228 (476)
T ss_pred             CCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEccc
Confidence                                 001122568888888888888888887         6666666653

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=98.94  E-value=8.5e-09  Score=76.46  Aligned_cols=82  Identities=18%  Similarity=0.208  Sum_probs=69.2

Q ss_pred             CCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce---eccCCCc--EEEEEecCCcceeeeeeecccEEEEecCCCcEEE
Q 036317           13 SDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL---PVSHNST--LEASFSQHLSLVALSVLILRSWVLEGSGDGSVYA   87 (106)
Q Consensus        13 ~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~---~~~~~~~--~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~   87 (106)
                      +.|..+.|+.||+.+++++.+|+|.+||+.+...   -...+.+  +.++.|+++           .++|+||..|-|.|
T Consensus       345 G~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng-----------~ylA~GS~~GiVNI  413 (514)
T KOG2055|consen  345 GVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNG-----------SYLATGSDSGIVNI  413 (514)
T ss_pred             cEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCC-----------ceEEeccCcceEEE
Confidence            4789999999999999999999999999988766   1233333  457888999           99999999999999


Q ss_pred             EECCCCC----------------CCcEEEeCCCC
Q 036317           88 WSARSGK----------------EPPVIKWAPGS  105 (106)
Q Consensus        88 wd~~~~~----------------~v~~i~~sp~~  105 (106)
                      ||.++..                .|..++|+|+.
T Consensus       414 Yd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~  447 (514)
T KOG2055|consen  414 YDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDA  447 (514)
T ss_pred             eccchhhccCCCCchhhhhhhheeeeeeeeCcch
Confidence            9987654                88999999863

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=98.93  E-value=1.1e-09  Score=84.67  Aligned_cols=87  Identities=20%  Similarity=0.271  Sum_probs=76.7

Q ss_pred             ecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCC
Q 036317            7 SDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGD   82 (106)
Q Consensus         7 ~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d   82 (106)
                      .+.+|.+.|.++.|+++...+++++++|+|++||++.++.    .++...++.+.|+|-+           .|.++|+.|
T Consensus        65 S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~-----------~~~a~gStd  133 (825)
T KOG0267|consen   65 SLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYG-----------EFFASGSTD  133 (825)
T ss_pred             eeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccce-----------EEecccccc
Confidence            4567788999999999999999999999999999998886    5666778889999999           999999999


Q ss_pred             CcEEEEECCC-CC---------CCcEEEeCCC
Q 036317           83 GSVYAWSARS-GK---------EPPVIKWAPG  104 (106)
Q Consensus        83 ~~i~~wd~~~-~~---------~v~~i~~sp~  104 (106)
                      ..+.+||.+. |-         .+.+++|+|+
T Consensus       134 td~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~  165 (825)
T KOG0267|consen  134 TDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPD  165 (825)
T ss_pred             ccceehhhhccCceeeecCCcceeEEEeecCC
Confidence            9999999983 32         6889999986

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=98.92  E-value=4.3e-09  Score=76.53  Aligned_cols=90  Identities=24%  Similarity=0.365  Sum_probs=73.9

Q ss_pred             eeecCCCCCCeeEEEECC--CCCeEEEEeCCCeEEEEEcCCCce-------eccCCCcEEEEEecCCcceeeeeeecccE
Q 036317            5 IFSDGGDVSDANEVKLSN--DGRLMLLTTLEGHIHVLHSFQGTL-------PVSHNSTLEASFSQHLSLVALSVLILRSW   75 (106)
Q Consensus         5 ~~~~~~~~~~v~~v~~sp--dg~~l~~~~~~~~i~l~d~~~~~~-------~~~~~~~~~~~fs~d~~~~~~~~~~~~~~   75 (106)
                      .|+..+|+++=..++|||  +|+ ++++--.+.|++|...+|.-       .+|..++..+.|||..          +..
T Consensus       204 l~t~~ghk~EGy~LdWSp~~~g~-LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE----------~~v  272 (440)
T KOG0302|consen  204 LFTFNGHKGEGYGLDWSPIKTGR-LLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTE----------DGV  272 (440)
T ss_pred             eEEecccCccceeeecccccccc-cccCccccceEeeeeccCceeecCccccccccchhhhccCCcc----------Cce
Confidence            577888888889999999  455 66666678999999887764       3466778889999987          367


Q ss_pred             EEEecCCCcEEEEECCCCC------------CCcEEEeCCCC
Q 036317           76 VLEGSGDGSVYAWSARSGK------------EPPVIKWAPGS  105 (106)
Q Consensus        76 i~t~s~d~~i~~wd~~~~~------------~v~~i~~sp~~  105 (106)
                      ++++|.|++|+|||++.++            .|+.|+|+.+.
T Consensus       273 faScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~  314 (440)
T KOG0302|consen  273 FASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRRE  314 (440)
T ss_pred             EEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCc
Confidence            8999999999999999984            78888888754

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=98.91  E-value=1.1e-08  Score=73.02  Aligned_cols=87  Identities=20%  Similarity=0.291  Sum_probs=72.1

Q ss_pred             eeecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeeccc--EEEE
Q 036317            5 IFSDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRS--WVLE   78 (106)
Q Consensus         5 ~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~--~i~t   78 (106)
                      .|....|.+.|++++.+  |.|+++++.|.+|+|||..+...    ..+.+.++++.|.+.-           .  .+++
T Consensus        36 lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~-----------S~shLlS  102 (362)
T KOG0294|consen   36 LFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPL-----------SKSHLLS  102 (362)
T ss_pred             cccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCc-----------chhheee
Confidence            46666777899998885  78999999999999999877655    4577888899999886           5  8999


Q ss_pred             ecCCCcEEEEECCCCC----------CCcEEEeCCC
Q 036317           79 GSGDGSVYAWSARSGK----------EPPVIKWAPG  104 (106)
Q Consensus        79 ~s~d~~i~~wd~~~~~----------~v~~i~~sp~  104 (106)
                      |++||.|.+|+..+=+          .|+.++.+|.
T Consensus       103 ~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS  138 (362)
T KOG0294|consen  103 GSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPS  138 (362)
T ss_pred             ecCCCcEEEEEcCCeEEeeeecccccccceeEecCC
Confidence            9999999999986532          7888888885

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=98.90  E-value=8.4e-09  Score=74.79  Aligned_cols=88  Identities=15%  Similarity=0.191  Sum_probs=71.4

Q ss_pred             ceeeecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEE
Q 036317            3 FDIFSDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLE   78 (106)
Q Consensus         3 ~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t   78 (106)
                      |+.+.+.||.+.|-+++|..  +.+++++.|.++++||+.+|+.    ..|...+..+.|+ .            .+++|
T Consensus       228 ~c~~~L~GHtGSVLCLqyd~--rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~-n------------g~mvt  292 (499)
T KOG0281|consen  228 ECLKILTGHTGSVLCLQYDE--RVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS-N------------GYMVT  292 (499)
T ss_pred             HHHHhhhcCCCcEEeeeccc--eEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEe-C------------CEEEE
Confidence            34566778999998888754  5889999999999999999998    3455667777777 3            47899


Q ss_pred             ecCCCcEEEEECCCCC-------------CCcEEEeCCCC
Q 036317           79 GSGDGSVYAWSARSGK-------------EPPVIKWAPGS  105 (106)
Q Consensus        79 ~s~d~~i~~wd~~~~~-------------~v~~i~~sp~~  105 (106)
                      +|.|.+|.+||+.+..             .|+.++|+.+|
T Consensus       293 cSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~ky  332 (499)
T KOG0281|consen  293 CSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKY  332 (499)
T ss_pred             ecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccccce
Confidence            9999999999999765             78888887664

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=98.89  E-value=3e-08  Score=68.45  Aligned_cols=74  Identities=15%  Similarity=0.180  Sum_probs=56.9

Q ss_pred             eEEEECCCCCeEEEE-eCCCeEEEEEcCCCcee---ccCCCcEEEEEecCCcceeeeeeecccEEEEe-cCCCcEEEEEC
Q 036317           16 NEVKLSNDGRLMLLT-TLEGHIHVLHSFQGTLP---VSHNSTLEASFSQHLSLVALSVLILRSWVLEG-SGDGSVYAWSA   90 (106)
Q Consensus        16 ~~v~~spdg~~l~~~-~~~~~i~l~d~~~~~~~---~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~-s~d~~i~~wd~   90 (106)
                      ..++|+|||++++++ ..++.+.+||..++++.   .....+..++|+|+|           ++|+++ ..+++|++||+
T Consensus       210 ~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~g-----------~~l~~~~~~~~~i~v~d~  278 (300)
T TIGR03866       210 VGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLVGQRVWQLAFTPDE-----------KYLLTTNGVSNDVSVIDV  278 (300)
T ss_pred             cceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEeCCCcceEEECCCC-----------CEEEEEcCCCCeEEEEEC
Confidence            468899999986554 45678999999888771   223356679999999           998876 46899999999


Q ss_pred             CCCCCCcEEE
Q 036317           91 RSGKEPPVIK  100 (106)
Q Consensus        91 ~~~~~v~~i~  100 (106)
                      ++++.+..++
T Consensus       279 ~~~~~~~~~~  288 (300)
T TIGR03866       279 AALKVIKSIK  288 (300)
T ss_pred             CCCcEEEEEE
Confidence            9998444444

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.89  E-value=1.6e-08  Score=75.69  Aligned_cols=89  Identities=17%  Similarity=0.261  Sum_probs=72.1

Q ss_pred             CCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcE
Q 036317           10 GDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSV   85 (106)
Q Consensus        10 ~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i   85 (106)
                      .+-+.|.+++.+|||++++++.+..++.++|+.+|++    +...+-++...|||++.|+|++++.       |-....|
T Consensus       399 ~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~-------gy~tq~I  471 (668)
T COG4946         399 KDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPE-------GYYTQSI  471 (668)
T ss_pred             CCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCc-------ceeeeeE
Confidence            3346899999999999999999999999999999998    3455667889999999888877772       2234589


Q ss_pred             EEEECCCCC-----CCcEEEeCCCC
Q 036317           86 YAWSARSGK-----EPPVIKWAPGS  105 (106)
Q Consensus        86 ~~wd~~~~~-----~v~~i~~sp~~  105 (106)
                      +++|+..++     ....-+|+|.|
T Consensus       472 klydm~~~Kiy~vTT~ta~DfsPaF  496 (668)
T COG4946         472 KLYDMDGGKIYDVTTPTAYDFSPAF  496 (668)
T ss_pred             EEEecCCCeEEEecCCcccccCccc
Confidence            999999988     55666777765

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=98.88  E-value=1.7e-08  Score=72.52  Aligned_cols=88  Identities=16%  Similarity=0.200  Sum_probs=68.8

Q ss_pred             eecCCCCCCeeEEEECCCCCeEEEEe-CCCeEEEEEcCCCce-----ecc---CCCcEEEEEecCCcceeeeeeecccEE
Q 036317            6 FSDGGDVSDANEVKLSNDGRLMLLTT-LEGHIHVLHSFQGTL-----PVS---HNSTLEASFSQHLSLVALSVLILRSWV   76 (106)
Q Consensus         6 ~~~~~~~~~v~~v~~spdg~~l~~~~-~~~~i~l~d~~~~~~-----~~~---~~~~~~~~fs~d~~~~~~~~~~~~~~i   76 (106)
                      +-+.++.+.|+.+.|.+||+++.+++ .+..|..||+..-+.     ..+   .+.-+.....|++           +++
T Consensus       244 ~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~-----------~~L  312 (406)
T KOG2919|consen  244 QLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKG-----------EIL  312 (406)
T ss_pred             eeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCC-----------cee
Confidence            34557788999999999999998887 578999999976443     222   2222335667999           999


Q ss_pred             EEecCCCcEEEEECCC-CC----------CCcEEEeCCC
Q 036317           77 LEGSGDGSVYAWSARS-GK----------EPPVIKWAPG  104 (106)
Q Consensus        77 ~t~s~d~~i~~wd~~~-~~----------~v~~i~~sp~  104 (106)
                      ++|+.||.|++||+++ |.          .++.++++|.
T Consensus       313 asG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~  351 (406)
T KOG2919|consen  313 ASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPI  351 (406)
T ss_pred             eccCCCccEEEEecCCCCCcccccccccccccceecCcc
Confidence            9999999999999998 55          6778888874

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=98.88  E-value=1.9e-08  Score=71.87  Aligned_cols=84  Identities=17%  Similarity=0.290  Sum_probs=72.6

Q ss_pred             CCCCCeeEEEECCCCC--eEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCC
Q 036317           10 GDVSDANEVKLSNDGR--LMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDG   83 (106)
Q Consensus        10 ~~~~~v~~v~~spdg~--~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~   83 (106)
                      .|.+.|+++.|.++-.  +|++++.||.|.+|+...-+.    ..|.+.++.++++|.+           +..++.+.|+
T Consensus        81 ~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~-----------KLALsVg~D~  149 (362)
T KOG0294|consen   81 SHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSG-----------KLALSVGGDQ  149 (362)
T ss_pred             ccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCC-----------ceEEEEcCCc
Confidence            4567999999999865  899999999999999866544    5577778899999999           9999999999


Q ss_pred             cEEEEECCCCC---------CCcEEEeCCC
Q 036317           84 SVYAWSARSGK---------EPPVIKWAPG  104 (106)
Q Consensus        84 ~i~~wd~~~~~---------~v~~i~~sp~  104 (106)
                      .+++|++-.|+         ....+.|+|+
T Consensus       150 ~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~  179 (362)
T KOG0294|consen  150 VLRTWNLVRGRVAFVLNLKNKATLVSWSPQ  179 (362)
T ss_pred             eeeeehhhcCccceeeccCCcceeeEEcCC
Confidence            99999999998         5566888876

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.87  E-value=2.2e-08  Score=72.49  Aligned_cols=78  Identities=17%  Similarity=0.190  Sum_probs=64.8

Q ss_pred             eecCCCCCCeeEEEECCCCCeEEEEeCCCeE-EEEEcCCCce--ecc----CCCcEEEEEecCCcceeeeeeecccEEEE
Q 036317            6 FSDGGDVSDANEVKLSNDGRLMLLTTLEGHI-HVLHSFQGTL--PVS----HNSTLEASFSQHLSLVALSVLILRSWVLE   78 (106)
Q Consensus         6 ~~~~~~~~~v~~v~~spdg~~l~~~~~~~~i-~l~d~~~~~~--~~~----~~~~~~~~fs~d~~~~~~~~~~~~~~i~t   78 (106)
                      ..++.|++.+.+++|+++|.++|+++..|+| +++.+.+|+.  ...    ...+.+++|+||+           +++.+
T Consensus       167 ~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds-----------~~L~~  235 (391)
T KOG2110|consen  167 NTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDS-----------QFLAA  235 (391)
T ss_pred             eEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCC-----------CeEEE
Confidence            3456788999999999999999999988875 7999988877  212    2235679999999           99999


Q ss_pred             ecCCCcEEEEECCCCC
Q 036317           79 GSGDGSVYAWSARSGK   94 (106)
Q Consensus        79 ~s~d~~i~~wd~~~~~   94 (106)
                      .|..++|+++.++.-.
T Consensus       236 sS~TeTVHiFKL~~~~  251 (391)
T KOG2110|consen  236 SSNTETVHIFKLEKVS  251 (391)
T ss_pred             ecCCCeEEEEEecccc
Confidence            9999999999998644

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.87  E-value=2.1e-08  Score=74.56  Aligned_cols=75  Identities=17%  Similarity=0.129  Sum_probs=61.5

Q ss_pred             CCCCCCeeEEEECCCCCeE-EEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCC
Q 036317            9 GGDVSDANEVKLSNDGRLM-LLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDG   83 (106)
Q Consensus         9 ~~~~~~v~~v~~spdg~~l-~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~   83 (106)
                      .+|..++..+.|+|+++.+ ++++.|+.+++||+.++.+    ..+..++.+.+|+|..          +..++|||+||
T Consensus       107 ~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~----------~hivvtGsYDg  176 (487)
T KOG0310|consen  107 YAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPAN----------DHIVVTGSYDG  176 (487)
T ss_pred             hhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCC----------CeEEEecCCCc
Confidence            3566799999999976655 4666778889999988876    5677888888999886          25899999999


Q ss_pred             cEEEEECCCC
Q 036317           84 SVYAWSARSG   93 (106)
Q Consensus        84 ~i~~wd~~~~   93 (106)
                      +|++||+++.
T Consensus       177 ~vrl~DtR~~  186 (487)
T KOG0310|consen  177 KVRLWDTRSL  186 (487)
T ss_pred             eEEEEEeccC
Confidence            9999999976

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=98.87  E-value=5.8e-09  Score=76.28  Aligned_cols=77  Identities=14%  Similarity=0.122  Sum_probs=67.5

Q ss_pred             ecCCCCCCeeEEEECCCC-CeEEEEeCCCeEEEEEcCCCce---eccCCCcEEEEEecCCcceeeeeeecccEEEEecCC
Q 036317            7 SDGGDVSDANEVKLSNDG-RLMLLTTLEGHIHVLHSFQGTL---PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGD   82 (106)
Q Consensus         7 ~~~~~~~~v~~v~~spdg-~~l~~~~~~~~i~l~d~~~~~~---~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d   82 (106)
                      .+.+|..+|..|+|+|.. +.|++++.|.+|.+||+.+|+.   ..|...+.+++|+.||           ..++|.+.|
T Consensus       126 ~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~dG-----------s~l~TtckD  194 (472)
T KOG0303|consen  126 ELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLDHPDMVYSMSFNRDG-----------SLLCTTCKD  194 (472)
T ss_pred             EEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecCCCCeEEEEEeccCC-----------ceeeeeccc
Confidence            356777799999999974 5667889999999999999987   3366677899999999           999999999


Q ss_pred             CcEEEEECCCCC
Q 036317           83 GSVYAWSARSGK   94 (106)
Q Consensus        83 ~~i~~wd~~~~~   94 (106)
                      ..|+|||.++|+
T Consensus       195 KkvRv~dpr~~~  206 (472)
T KOG0303|consen  195 KKVRVIDPRRGT  206 (472)
T ss_pred             ceeEEEcCCCCc
Confidence            999999999988

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.87  E-value=1.8e-08  Score=77.23  Aligned_cols=74  Identities=11%  Similarity=0.196  Sum_probs=66.1

Q ss_pred             CCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcE
Q 036317           10 GDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSV   85 (106)
Q Consensus        10 ~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i   85 (106)
                      |++..|.+++.++.|..+++++-++-+++||..+++.    .+|..-+..+..+.||           +.++++|.||+|
T Consensus       169 G~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDG-----------t~~ls~sSDgtI  237 (735)
T KOG0308|consen  169 GPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDG-----------TRLLSASSDGTI  237 (735)
T ss_pred             CCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCC-----------CeEeecCCCceE
Confidence            6777999999999999999999999999999998765    5677677778899999           999999999999


Q ss_pred             EEEECCCCC
Q 036317           86 YAWSARSGK   94 (106)
Q Consensus        86 ~~wd~~~~~   94 (106)
                      ++||+...+
T Consensus       238 rlWdLgqQr  246 (735)
T KOG0308|consen  238 RLWDLGQQR  246 (735)
T ss_pred             Eeeeccccc
Confidence            999997655

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=98.86  E-value=1.3e-08  Score=75.26  Aligned_cols=74  Identities=19%  Similarity=0.239  Sum_probs=66.2

Q ss_pred             CCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcE
Q 036317           10 GDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSV   85 (106)
Q Consensus        10 ~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i   85 (106)
                      +|..++-+++.||||+|+++++.|..++|||..+.+.    ..+.+.+.+.+|-...           ..+.+++.|++|
T Consensus       200 ~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt-----------~~lys~s~Drsv  268 (479)
T KOG0299|consen  200 GHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGT-----------SELYSASADRSV  268 (479)
T ss_pred             cccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCc-----------cceeeeecCCce
Confidence            6667999999999999999999999999999999876    5677888889999887           889999999999


Q ss_pred             EEEECCCCC
Q 036317           86 YAWSARSGK   94 (106)
Q Consensus        86 ~~wd~~~~~   94 (106)
                      ++|+++...
T Consensus       269 kvw~~~~~s  277 (479)
T KOG0299|consen  269 KVWSIDQLS  277 (479)
T ss_pred             EEEehhHhH
Confidence            999997643

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=98.86  E-value=1.5e-08  Score=78.77  Aligned_cols=87  Identities=16%  Similarity=0.209  Sum_probs=76.8

Q ss_pred             ecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCC
Q 036317            7 SDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGD   82 (106)
Q Consensus         7 ~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d   82 (106)
                      .+.||+=+|.+++.|||++.+++++.|+++++|-+.=|..    ..|..+++++.|-|+.           ..+.|++.|
T Consensus       545 sLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~-----------~~FFt~gKD  613 (888)
T KOG0306|consen  545 SLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKT-----------HLFFTCGKD  613 (888)
T ss_pred             eecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccc-----------eeEEEecCc
Confidence            3468888999999999999999999999999999887776    4467788999999999           999999999


Q ss_pred             CcEEEEECCCCC----------CCcEEEeCCC
Q 036317           83 GSVYAWSARSGK----------EPPVIKWAPG  104 (106)
Q Consensus        83 ~~i~~wd~~~~~----------~v~~i~~sp~  104 (106)
                      +.|+-||-+.-+          .|+|++.+|+
T Consensus       614 ~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~  645 (888)
T KOG0306|consen  614 GKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPN  645 (888)
T ss_pred             ceEEeechhhhhhheeeccchheeeeeEEcCC
Confidence            999999877644          8888888876

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.86  E-value=8.3e-09  Score=71.65  Aligned_cols=84  Identities=14%  Similarity=0.303  Sum_probs=74.0

Q ss_pred             CCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce-------eccCCCcEEEEEec--CCcceeeeeeecccEEEEec
Q 036317           10 GDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL-------PVSHNSTLEASFSQ--HLSLVALSVLILRSWVLEGS   80 (106)
Q Consensus        10 ~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~-------~~~~~~~~~~~fs~--d~~~~~~~~~~~~~~i~t~s   80 (106)
                      +|..-|.+++++--|+.|++++.|++|+|+.......       .++.+++..+.|.+  .|           .+|++++
T Consensus         9 ~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G-----------~iLAScs   77 (299)
T KOG1332|consen    9 QHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFG-----------TILASCS   77 (299)
T ss_pred             hhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccC-----------cEeeEee
Confidence            4556788888999999999999999999999875432       67889999999997  78           9999999


Q ss_pred             CCCcEEEEECCCCC------------CCcEEEeCCC
Q 036317           81 GDGSVYAWSARSGK------------EPPVIKWAPG  104 (106)
Q Consensus        81 ~d~~i~~wd~~~~~------------~v~~i~~sp~  104 (106)
                      +||.|-||..+.|+            .|++++|.|.
T Consensus        78 YDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~waph  113 (299)
T KOG1332|consen   78 YDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPH  113 (299)
T ss_pred             cCceEEEEecCCCchhhhhhhhhhcccceeeccccc
Confidence            99999999999987            8899999884

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=98.85  E-value=4.2e-09  Score=79.16  Aligned_cols=80  Identities=19%  Similarity=0.295  Sum_probs=68.1

Q ss_pred             CeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEEE
Q 036317           14 DANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWS   89 (106)
Q Consensus        14 ~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd   89 (106)
                      ....++.|||.+...+.+.||.|.|||+.+..+    +++.....++.+++||           ..|-||+-|.+|+.||
T Consensus       511 aCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dG-----------tklWTGGlDntvRcWD  579 (705)
T KOG0639|consen  511 ACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDG-----------TKLWTGGLDNTVRCWD  579 (705)
T ss_pred             hhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCC-----------ceeecCCCccceeehh
Confidence            345789999999999999999999999987765    5666667778999999           9999999999999999


Q ss_pred             CCCCC---------CCcEEEeCCC
Q 036317           90 ARSGK---------EPPVIKWAPG  104 (106)
Q Consensus        90 ~~~~~---------~v~~i~~sp~  104 (106)
                      +++++         .|-++.++|+
T Consensus       580 lregrqlqqhdF~SQIfSLg~cP~  603 (705)
T KOG0639|consen  580 LREGRQLQQHDFSSQIFSLGYCPT  603 (705)
T ss_pred             hhhhhhhhhhhhhhhheecccCCC
Confidence            99997         5566666654

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.84  E-value=1.1e-08  Score=74.67  Aligned_cols=67  Identities=19%  Similarity=0.262  Sum_probs=61.1

Q ss_pred             eEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEEECC
Q 036317           16 NEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSAR   91 (106)
Q Consensus        16 ~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd~~   91 (106)
                      ..++|+.||..+++++.||.+++|+..+...    ..+++.+.++.|||||           ++|++-+.| ..+||+.+
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dg-----------k~lasig~d-~~~VW~~~  215 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDG-----------KFLASIGAD-SARVWSVN  215 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCC-----------cEEEEecCC-ceEEEEec
Confidence            6899999999999999999999999766655    5678888999999999           999999999 99999999


Q ss_pred             CCC
Q 036317           92 SGK   94 (106)
Q Consensus        92 ~~~   94 (106)
                      +|.
T Consensus       216 ~g~  218 (398)
T KOG0771|consen  216 TGA  218 (398)
T ss_pred             cCc
Confidence            994

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.81  E-value=6.8e-08  Score=71.87  Aligned_cols=87  Identities=13%  Similarity=0.108  Sum_probs=70.0

Q ss_pred             eeecCCCCCCeeEEEECCCCCe-EEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEe
Q 036317            5 IFSDGGDVSDANEVKLSNDGRL-MLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEG   79 (106)
Q Consensus         5 ~~~~~~~~~~v~~v~~spdg~~-l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~   79 (106)
                      ..++.+|..-|++.+++|...+ +++++.||.|++||......    .++..++..+.+-|.|           ..|+++
T Consensus       146 ~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsg-----------s~iasA  214 (487)
T KOG0310|consen  146 QAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSG-----------SLIASA  214 (487)
T ss_pred             EEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCC-----------CEEEEc
Confidence            4567788889999999998764 57888999999999876632    3344566778999999           999998


Q ss_pred             cCCCcEEEEECCCCC-----------CCcEEEeCC
Q 036317           80 SGDGSVYAWSARSGK-----------EPPVIKWAP  103 (106)
Q Consensus        80 s~d~~i~~wd~~~~~-----------~v~~i~~sp  103 (106)
                      +.+ .|++||+.+|.           .|.|+++..
T Consensus       215 gGn-~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s  248 (487)
T KOG0310|consen  215 GGN-SVKVWDLTTGGQLLTSMFNHNKTVTCLRLAS  248 (487)
T ss_pred             CCC-eEEEEEecCCceehhhhhcccceEEEEEeec
Confidence            766 89999999664           788888865

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.80  E-value=6e-08  Score=74.46  Aligned_cols=87  Identities=10%  Similarity=0.047  Sum_probs=73.8

Q ss_pred             ecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce-----eccCCCcEEEEEecCCcceeeeeeecccEEEEecC
Q 036317            7 SDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL-----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSG   81 (106)
Q Consensus         7 ~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~-----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~   81 (106)
                      ..+.|..-|++++.+|..-++++++.|-+|++||.+..-.     .+|...++.++|.|..          ...++++|-
T Consensus        92 ~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD----------~ntFaS~sL  161 (794)
T KOG0276|consen   92 TFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKD----------PNTFASASL  161 (794)
T ss_pred             EeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCC----------ccceeeeec
Confidence            3456777899999999999999999999999999876643     5677788999999875          278999999


Q ss_pred             CCcEEEEECCCCC----------CCcEEEeCC
Q 036317           82 DGSVYAWSARSGK----------EPPVIKWAP  103 (106)
Q Consensus        82 d~~i~~wd~~~~~----------~v~~i~~sp  103 (106)
                      |++|++|.+.+..          .|+|+.|-|
T Consensus       162 DrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~  193 (794)
T KOG0276|consen  162 DRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYT  193 (794)
T ss_pred             cccEEEEEcCCCCCceeeeccccCcceEEecc
Confidence            9999999997654          788888754

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=98.80  E-value=1.5e-07  Score=64.97  Aligned_cols=80  Identities=19%  Similarity=0.214  Sum_probs=60.6

Q ss_pred             CeeEEEECCCCCeEE-EEeCCCeEEEEEcCCCcee---ccCCCcEEEEEecCCcceeeeeeecccEEEE-ecCCCcEEEE
Q 036317           14 DANEVKLSNDGRLML-LTTLEGHIHVLHSFQGTLP---VSHNSTLEASFSQHLSLVALSVLILRSWVLE-GSGDGSVYAW   88 (106)
Q Consensus        14 ~v~~v~~spdg~~l~-~~~~~~~i~l~d~~~~~~~---~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t-~s~d~~i~~w   88 (106)
                      .+..++|+|||+.++ ++..++.+.+||..+++..   .....+..+.|+|++           +.++. ++.++.+++|
T Consensus        32 ~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g-----------~~l~~~~~~~~~l~~~  100 (300)
T TIGR03866        32 RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPELFALHPNG-----------KILYIANEDDNLVTVI  100 (300)
T ss_pred             CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCccEEEECCCC-----------CEEEEEcCCCCeEEEE
Confidence            467899999999874 5567899999999888761   122234568899999           87654 4568899999


Q ss_pred             ECCCCC---------CCcEEEeCCC
Q 036317           89 SARSGK---------EPPVIKWAPG  104 (106)
Q Consensus        89 d~~~~~---------~v~~i~~sp~  104 (106)
                      |+++++         .+..++|+|+
T Consensus       101 d~~~~~~~~~~~~~~~~~~~~~~~d  125 (300)
T TIGR03866       101 DIETRKVLAEIPVGVEPEGMAVSPD  125 (300)
T ss_pred             ECCCCeEEeEeeCCCCcceEEECCC
Confidence            999865         3567788875

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.78  E-value=7.4e-08  Score=68.80  Aligned_cols=77  Identities=25%  Similarity=0.339  Sum_probs=66.1

Q ss_pred             ecCCCCCCeeEEEECCCCCeEEEEeCCCe-EEEEEcCCCce-----ec-cCCCcEEEEEecCCcceeeeeeecccEEEEe
Q 036317            7 SDGGDVSDANEVKLSNDGRLMLLTTLEGH-IHVLHSFQGTL-----PV-SHNSTLEASFSQHLSLVALSVLILRSWVLEG   79 (106)
Q Consensus         7 ~~~~~~~~v~~v~~spdg~~l~~~~~~~~-i~l~d~~~~~~-----~~-~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~   79 (106)
                      .+..|.++|.+++++-+|..+|+++..|+ |+|||..+|+.     .+ .+..+..++|||+.           .+++.+
T Consensus       176 ~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~-----------s~Lavs  244 (346)
T KOG2111|consen  176 IINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNS-----------SWLAVS  244 (346)
T ss_pred             EEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCc-----------cEEEEE
Confidence            45678899999999999999999998876 58999999987     11 34567789999999           999999


Q ss_pred             cCCCcEEEEECCCCC
Q 036317           80 SGDGSVYAWSARSGK   94 (106)
Q Consensus        80 s~d~~i~~wd~~~~~   94 (106)
                      |+-|++.|+.++...
T Consensus       245 SdKgTlHiF~l~~~~  259 (346)
T KOG2111|consen  245 SDKGTLHIFSLRDTE  259 (346)
T ss_pred             cCCCeEEEEEeecCC
Confidence            999999999998744

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=98.78  E-value=2.5e-08  Score=71.04  Aligned_cols=79  Identities=13%  Similarity=0.231  Sum_probs=65.2

Q ss_pred             eeecCCCCCCeeEEEECCCCCeEE-EEeCCCeEEEEEcCCC--ce-----------------eccCCCcEEEEEecCCcc
Q 036317            5 IFSDGGDVSDANEVKLSNDGRLML-LTTLEGHIHVLHSFQG--TL-----------------PVSHNSTLEASFSQHLSL   64 (106)
Q Consensus         5 ~~~~~~~~~~v~~v~~spdg~~l~-~~~~~~~i~l~d~~~~--~~-----------------~~~~~~~~~~~fs~d~~~   64 (106)
                      +..+.||++.|-+|+|+|..++++ +++.|+.+++||+...  .+                 +.+.+.+..++|+.|+  
T Consensus       181 sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~--  258 (397)
T KOG4283|consen  181 SHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDA--  258 (397)
T ss_pred             eeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccc--
Confidence            356789999999999999999885 6689999999998754  22                 1133445568889999  


Q ss_pred             eeeeeeecccEEEEecCCCcEEEEECCCCC
Q 036317           65 VALSVLILRSWVLEGSGDGSVYAWSARSGK   94 (106)
Q Consensus        65 ~~~~~~~~~~~i~t~s~d~~i~~wd~~~~~   94 (106)
                               +++++.+-|..+++|+.++|+
T Consensus       259 ---------~~l~~~gtd~r~r~wn~~~G~  279 (397)
T KOG4283|consen  259 ---------RYLASCGTDDRIRVWNMESGR  279 (397)
T ss_pred             ---------hhhhhccCccceEEeecccCc
Confidence                     999999999999999999987

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=98.78  E-value=1.5e-08  Score=70.97  Aligned_cols=66  Identities=15%  Similarity=0.228  Sum_probs=60.8

Q ss_pred             CeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEEE
Q 036317           14 DANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWS   89 (106)
Q Consensus        14 ~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd   89 (106)
                      .|+.+..-||++.+++++.|+.+++|+.++.+.    ..|.+.+.+++|+||.           ..++.+|+|+.|.+|+
T Consensus       253 Gv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~-----------~lmAaaskD~rISLWk  321 (323)
T KOG0322|consen  253 GVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDC-----------ELMAAASKDARISLWK  321 (323)
T ss_pred             CccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCC-----------chhhhccCCceEEeee
Confidence            688899999999999999999999999999887    5567788899999998           8999999999999999


Q ss_pred             C
Q 036317           90 A   90 (106)
Q Consensus        90 ~   90 (106)
                      +
T Consensus       322 L  322 (323)
T KOG0322|consen  322 L  322 (323)
T ss_pred             c
Confidence            7

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=98.78  E-value=3.6e-08  Score=70.94  Aligned_cols=76  Identities=16%  Similarity=0.213  Sum_probs=65.6

Q ss_pred             ecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce-----eccCCCcEEEEEecCCcceeeeeeecccEEEEecC
Q 036317            7 SDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL-----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSG   81 (106)
Q Consensus         7 ~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~-----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~   81 (106)
                      .+.||..+.+.+.-+|..+.+++++.|.+.++||....-.     +++...+++++|..|.            .|++||+
T Consensus       309 ~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd------------~vVSgSD  376 (481)
T KOG0300|consen  309 ILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD------------RVVSGSD  376 (481)
T ss_pred             cccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCC------------ceeecCC
Confidence            3467788999999999999999999999999999764322     6678889999999886            5789999


Q ss_pred             CCcEEEEECCCCC
Q 036317           82 DGSVYAWSARSGK   94 (106)
Q Consensus        82 d~~i~~wd~~~~~   94 (106)
                      |.+|++||+++..
T Consensus       377 DrTvKvWdLrNMR  389 (481)
T KOG0300|consen  377 DRTVKVWDLRNMR  389 (481)
T ss_pred             CceEEEeeecccc
Confidence            9999999999876

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=98.73  E-value=2.4e-07  Score=66.50  Aligned_cols=86  Identities=16%  Similarity=0.226  Sum_probs=62.6

Q ss_pred             CCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce---eccCCCcEEEEEecC--Ccceeee---------------
Q 036317            9 GGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL---PVSHNSTLEASFSQH--LSLVALS---------------   68 (106)
Q Consensus         9 ~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~---~~~~~~~~~~~fs~d--~~~~~~~---------------   68 (106)
                      .+|.-+|.+++||+||++|++++.|..+.+||+..|..   .....++..+.|+|.  .|++++-               
T Consensus        62 saH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h  141 (405)
T KOG1273|consen   62 SAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKH  141 (405)
T ss_pred             hccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCce
Confidence            35666999999999999999999999999999998876   122233444444433  2222210               


Q ss_pred             -------------------eeecccEEEEecCCCcEEEEECCCCC
Q 036317           69 -------------------VLILRSWVLEGSGDGSVYAWSARSGK   94 (106)
Q Consensus        69 -------------------~~~~~~~i~t~s~d~~i~~wd~~~~~   94 (106)
                                         +-...++|.+|-.-|.+.++|.++-+
T Consensus       142 ~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e  186 (405)
T KOG1273|consen  142 SVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLE  186 (405)
T ss_pred             eeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchhe
Confidence                               12223899999999999999999877

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=98.72  E-value=1.9e-08  Score=74.16  Aligned_cols=72  Identities=21%  Similarity=0.397  Sum_probs=51.8

Q ss_pred             CCCeEEEEeCCCeEEEEEcCCCce------ec-------------------cCCCcEEEEEecCCcceeeeeeecccEEE
Q 036317           23 DGRLMLLTTLEGHIHVLHSFQGTL------PV-------------------SHNSTLEASFSQHLSLVALSVLILRSWVL   77 (106)
Q Consensus        23 dg~~l~~~~~~~~i~l~d~~~~~~------~~-------------------~~~~~~~~~fs~d~~~~~~~~~~~~~~i~   77 (106)
                      .|+|+|+++++..|.|||+.-...      .+                   |...+..++|...          .|..++
T Consensus       191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~----------~~nVLa  260 (463)
T KOG0270|consen  191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRN----------FRNVLA  260 (463)
T ss_pred             CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccc----------cceeEE
Confidence            378999999999999999753221      00                   1111122233322          247899


Q ss_pred             EecCCCcEEEEECCCCC----------CCcEEEeCCC
Q 036317           78 EGSGDGSVYAWSARSGK----------EPPVIKWAPG  104 (106)
Q Consensus        78 t~s~d~~i~~wd~~~~~----------~v~~i~~sp~  104 (106)
                      +||.|.+|++||+.+|+          .|++++|+|.
T Consensus       261 SgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~  297 (463)
T KOG0270|consen  261 SGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPY  297 (463)
T ss_pred             ecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCC
Confidence            99999999999999998          8999999986

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=98.72  E-value=5e-08  Score=75.28  Aligned_cols=88  Identities=16%  Similarity=0.144  Sum_probs=69.6

Q ss_pred             eecCCCCCCeeEEEECCCCCeEEEEeCCC-----eEEEEEcCCCc----eeccCCCcEEEEEecCCcceeeeeeecccEE
Q 036317            6 FSDGGDVSDANEVKLSNDGRLMLLTTLEG-----HIHVLHSFQGT----LPVSHNSTLEASFSQHLSLVALSVLILRSWV   76 (106)
Q Consensus         6 ~~~~~~~~~v~~v~~spdg~~l~~~~~~~-----~i~l~d~~~~~----~~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i   76 (106)
                      -++.||..+|.+++.||+|+.+++++...     .|.+|+..+=.    ++.|.-.++.+.|||||           ++|
T Consensus       519 ~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg-----------~~L  587 (764)
T KOG1063|consen  519 HKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDG-----------RYL  587 (764)
T ss_pred             HHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCC-----------cEE
Confidence            45678888999999999999999987653     56788865432    25566677889999999           999


Q ss_pred             EEecCCCcEEEEECCCCC--------------CCcEEEeCCC
Q 036317           77 LEGSGDGSVYAWSARSGK--------------EPPVIKWAPG  104 (106)
Q Consensus        77 ~t~s~d~~i~~wd~~~~~--------------~v~~i~~sp~  104 (106)
                      ++.|.|+++.+|....+.              .|..-+|+|+
T Consensus       588 LsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pd  629 (764)
T KOG1063|consen  588 LSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPD  629 (764)
T ss_pred             EEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcc
Confidence            999999999999886543              4555566665

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=98.71  E-value=1.5e-07  Score=73.39  Aligned_cols=82  Identities=9%  Similarity=0.142  Sum_probs=74.0

Q ss_pred             CCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce-------eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcE
Q 036317           13 SDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL-------PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSV   85 (106)
Q Consensus        13 ~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~-------~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i   85 (106)
                      ..+.+++..|..++++++++|..|+|+|+.+|+.       ..+.+..+.+...|.|           -||+|...|.++
T Consensus       597 tTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSg-----------iY~atScsdktl  665 (1080)
T KOG1408|consen  597 TTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSG-----------IYLATSCSDKTL  665 (1080)
T ss_pred             ceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCc-----------cEEEEeecCCce
Confidence            4788999999999999999999999999999987       2345778889999999           999999999999


Q ss_pred             EEEECCCCC----------CCcEEEeCCCC
Q 036317           86 YAWSARSGK----------EPPVIKWAPGS  105 (106)
Q Consensus        86 ~~wd~~~~~----------~v~~i~~sp~~  105 (106)
                      .++|..+|+          .|..++|.|+.
T Consensus       666 ~~~Df~sgEcvA~m~GHsE~VTG~kF~nDC  695 (1080)
T KOG1408|consen  666 CFVDFVSGECVAQMTGHSEAVTGVKFLNDC  695 (1080)
T ss_pred             EEEEeccchhhhhhcCcchheeeeeecccc
Confidence            999999998          88899998864

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=98.71  E-value=6.6e-08  Score=74.99  Aligned_cols=79  Identities=20%  Similarity=0.377  Sum_probs=68.1

Q ss_pred             CeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEEE
Q 036317           14 DANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWS   89 (106)
Q Consensus        14 ~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd   89 (106)
                      -|.+++|-|||.-++.+. +..+.++|.-+|..    .+|+..+..++|+.||           +.+++|+.|..|-+|.
T Consensus        14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgHKDtVycVAys~dG-----------krFASG~aDK~VI~W~   81 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDG-----------KRFASGSADKSVIIWT   81 (1081)
T ss_pred             chheeEECCCCceEEEec-CCEEEEEeCCCcccccccccccceEEEEEEccCC-----------ceeccCCCceeEEEec
Confidence            799999999999777655 56699999988876    6678888899999999           9999999999999998


Q ss_pred             CCC-CC-------CCcEEEeCCC
Q 036317           90 ARS-GK-------EPPVIKWAPG  104 (106)
Q Consensus        90 ~~~-~~-------~v~~i~~sp~  104 (106)
                      -+- |.       .|+|+.|+|-
T Consensus        82 ~klEG~LkYSH~D~IQCMsFNP~  104 (1081)
T KOG1538|consen   82 SKLEGILKYSHNDAIQCMSFNPI  104 (1081)
T ss_pred             ccccceeeeccCCeeeEeecCch
Confidence            763 32       9999999994

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=98.71  E-value=2e-07  Score=64.63  Aligned_cols=81  Identities=16%  Similarity=0.182  Sum_probs=69.2

Q ss_pred             CCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEE
Q 036317           13 SDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAW   88 (106)
Q Consensus        13 ~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~w   88 (106)
                      +.|.+++.+|.|+.++++-.|...-+||+..++.    ..+...+..+.|||..           .|++++|+|..|++=
T Consensus       232 savaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a-----------~yllt~syd~~iklt  300 (350)
T KOG0641|consen  232 SAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGA-----------HYLLTCSYDMKIKLT  300 (350)
T ss_pred             ceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCc-----------eEEEEecccceEEEe
Confidence            4799999999999999999999999999999887    2244566779999999           999999999999999


Q ss_pred             ECCCCC--------------CCcEEEeCCC
Q 036317           89 SARSGK--------------EPPVIKWAPG  104 (106)
Q Consensus        89 d~~~~~--------------~v~~i~~sp~  104 (106)
                      |++..-              .+..++|+|+
T Consensus       301 dlqgdla~el~~~vv~ehkdk~i~~rwh~~  330 (350)
T KOG0641|consen  301 DLQGDLAHELPIMVVAEHKDKAIQCRWHPQ  330 (350)
T ss_pred             ecccchhhcCceEEEEeccCceEEEEecCc
Confidence            998432              5666788876

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=98.71  E-value=1.7e-07  Score=71.91  Aligned_cols=39  Identities=10%  Similarity=0.098  Sum_probs=36.3

Q ss_pred             cCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce
Q 036317            8 DGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL   46 (106)
Q Consensus         8 ~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~   46 (106)
                      +.+|.+.|..++|..-+.++++++.|.++++||..+|+.
T Consensus       245 l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C  283 (537)
T KOG0274|consen  245 LVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGEC  283 (537)
T ss_pred             ccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcE
Confidence            678999999999998888899999999999999999987

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=98.71  E-value=9.9e-08  Score=69.33  Aligned_cols=81  Identities=17%  Similarity=0.187  Sum_probs=63.8

Q ss_pred             CeeEEEECCCCCeEEEE-eCCCeEEEEEcCCCce----------------------------------------------
Q 036317           14 DANEVKLSNDGRLMLLT-TLEGHIHVLHSFQGTL----------------------------------------------   46 (106)
Q Consensus        14 ~v~~v~~spdg~~l~~~-~~~~~i~l~d~~~~~~----------------------------------------------   46 (106)
                      .|.++.|+|-..-++.+ +.|+.|.|+|..++..                                              
T Consensus       189 ti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~  268 (433)
T KOG0268|consen  189 SISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVH  268 (433)
T ss_pred             ceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeeccccceecCccccceeeccccccceehhhhhhcccchhh
Confidence            67888888887666544 4888999999876653                                              


Q ss_pred             eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEEECCCCC-----------CCcEEEeCCCC
Q 036317           47 PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSARSGK-----------EPPVIKWAPGS  105 (106)
Q Consensus        47 ~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd~~~~~-----------~v~~i~~sp~~  105 (106)
                      ..+...++++.|||.|           +.+++||.|.+|+|+....+.           .|.|++||-++
T Consensus       269 ~dhvsAV~dVdfsptG-----------~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Ds  327 (433)
T KOG0268|consen  269 KDHVSAVMDVDFSPTG-----------QEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDS  327 (433)
T ss_pred             cccceeEEEeccCCCc-----------chhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccc
Confidence            1122356778999999           999999999999999999876           88899998653

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=98.71  E-value=2e-07  Score=67.08  Aligned_cols=88  Identities=14%  Similarity=0.201  Sum_probs=70.2

Q ss_pred             eeecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCC-------ce------e--ccCCCcEEEEEecCCcceeeee
Q 036317            5 IFSDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQG-------TL------P--VSHNSTLEASFSQHLSLVALSV   69 (106)
Q Consensus         5 ~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~-------~~------~--~~~~~~~~~~fs~d~~~~~~~~   69 (106)
                      .|++.||.+.|..++|||+.+.+++.+.||..++||..-.       +.      +  ...+.++.+..+|.|       
T Consensus       271 vf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g-------  343 (420)
T KOG2096|consen  271 VFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSG-------  343 (420)
T ss_pred             hheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCC-------
Confidence            4889999999999999999999999999999999996311       11      1  122345678999999       


Q ss_pred             eecccEEEEecCCCcEEEEECCCCC-----------CCcEEEeCCC
Q 036317           70 LILRSWVLEGSGDGSVYAWSARSGK-----------EPPVIKWAPG  104 (106)
Q Consensus        70 ~~~~~~i~t~s~d~~i~~wd~~~~~-----------~v~~i~~sp~  104 (106)
                          +.++.++ ..+++++..++|+           .|.+|+|+|+
T Consensus       344 ----~~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~  384 (420)
T KOG2096|consen  344 ----DSLAVSF-GSDLKVFASEDGKDYPELEDIHSTTISSISYSSD  384 (420)
T ss_pred             ----cEEEeec-CCceEEEEcccCccchhHHHhhcCceeeEEecCC
Confidence                7766554 4489999999987           8999999984

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=98.70  E-value=1.7e-07  Score=72.06  Aligned_cols=78  Identities=13%  Similarity=0.233  Sum_probs=67.7

Q ss_pred             eecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce------eccCCCcEEEEEecCCcceeeeeeecccEEEEe
Q 036317            6 FSDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL------PVSHNSTLEASFSQHLSLVALSVLILRSWVLEG   79 (106)
Q Consensus         6 ~~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~------~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~   79 (106)
                      +......+.|.+++.+|.+..+++++.||.+..++...++.      ...++++.+++|+|++           ..|++|
T Consensus       104 ~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~-----------~~i~~G  172 (691)
T KOG2048|consen  104 YNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTG-----------TKIAGG  172 (691)
T ss_pred             EEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCc-----------cEEEec
Confidence            34444556899999999999999999999888888888877      3355788999999999           999999


Q ss_pred             cCCCcEEEEECCCCC
Q 036317           80 SGDGSVYAWSARSGK   94 (106)
Q Consensus        80 s~d~~i~~wd~~~~~   94 (106)
                      +.||.|++||.++++
T Consensus       173 s~Dg~Iriwd~~~~~  187 (691)
T KOG2048|consen  173 SIDGVIRIWDVKSGQ  187 (691)
T ss_pred             ccCceEEEEEcCCCc
Confidence            999999999999987

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=98.70  E-value=1.1e-07  Score=68.33  Aligned_cols=91  Identities=20%  Similarity=0.224  Sum_probs=71.0

Q ss_pred             eeeecCCCCCCeeEEEECCCC----CeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccE
Q 036317            4 DIFSDGGDVSDANEVKLSNDG----RLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSW   75 (106)
Q Consensus         4 ~~~~~~~~~~~v~~v~~spdg----~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~   75 (106)
                      +.|.-+.+......++|+-|-    -++++++..|.|++.|..+++.    .++-..+.++.|.|+.          .+.
T Consensus        81 q~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~----------~ql  150 (385)
T KOG1034|consen   81 QSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDR----------PQL  150 (385)
T ss_pred             eeccCCCCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCC----------CcE
Confidence            334334344467788887553    3678888999999999998887    4455567789999986          478


Q ss_pred             EEEecCCCcEEEEECCCCC-------------CCcEEEeCCC
Q 036317           76 VLEGSGDGSVYAWSARSGK-------------EPPVIKWAPG  104 (106)
Q Consensus        76 i~t~s~d~~i~~wd~~~~~-------------~v~~i~~sp~  104 (106)
                      |+++|+|.+|++|+++++.             .|-+++|+++
T Consensus       151 vls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~  192 (385)
T KOG1034|consen  151 VLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLD  192 (385)
T ss_pred             EEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCC
Confidence            9999999999999999987             7888888875

>PRK01742 tolB translocation protein TolB; Provisional

Probab=98.70  E-value=2.5e-07  Score=68.84  Aligned_cols=84  Identities=20%  Similarity=0.247  Sum_probs=59.3

Q ss_pred             CCCCCeeEEEECCCCCeEEEEeCC---CeEEEEEcCCCce---eccCCCcEEEEEecCCcceeeeeeecccEEEEec-CC
Q 036317           10 GDVSDANEVKLSNDGRLMLLTTLE---GHIHVLHSFQGTL---PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGS-GD   82 (106)
Q Consensus        10 ~~~~~v~~v~~spdg~~l~~~~~~---~~i~l~d~~~~~~---~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s-~d   82 (106)
                      .+...+.+.+|||||++++.++.+   .++++||+.+++.   ....+....+.|+|||           +.|+.++ .+
T Consensus       201 ~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG-----------~~La~~~~~~  269 (429)
T PRK01742        201 RSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDG-----------SRLAFASSKD  269 (429)
T ss_pred             cCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCC-----------CEEEEEEecC
Confidence            334578999999999999887644   4799999988764   2122233458999999           8777654 57


Q ss_pred             CcE--EEEECCCCC---------CCcEEEeCCC
Q 036317           83 GSV--YAWSARSGK---------EPPVIKWAPG  104 (106)
Q Consensus        83 ~~i--~~wd~~~~~---------~v~~i~~sp~  104 (106)
                      +.+  ++||+.+++         .+....|+|+
T Consensus       270 g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpD  302 (429)
T PRK01742        270 GVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPD  302 (429)
T ss_pred             CcEEEEEEECCCCCeEeeccCCCCcCCEEECCC
Confidence            754  455776655         4567788875

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=98.69  E-value=1.2e-07  Score=73.97  Aligned_cols=83  Identities=13%  Similarity=0.254  Sum_probs=68.3

Q ss_pred             CCeeEEEECCC-CCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEE
Q 036317           13 SDANEVKLSND-GRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYA   87 (106)
Q Consensus        13 ~~v~~v~~spd-g~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~   87 (106)
                      -.++.+.|++. -.+++++++|+.|++||....+-    .....++..+.|+|..          ..+++++.++|.+++
T Consensus       134 Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~----------~~~F~s~~dsG~lql  203 (839)
T KOG0269|consen  134 RSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGY----------GNKFASIHDSGYLQL  203 (839)
T ss_pred             cceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCC----------CceEEEecCCceEEE
Confidence            47999999885 56778999999999999976554    3345567789999764          277899999999999


Q ss_pred             EECCCCC-----------CCcEEEeCCCC
Q 036317           88 WSARSGK-----------EPPVIKWAPGS  105 (106)
Q Consensus        88 wd~~~~~-----------~v~~i~~sp~~  105 (106)
                      ||++...           +|-|+.|+|+.
T Consensus       204 WDlRqp~r~~~k~~AH~GpV~c~nwhPnr  232 (839)
T KOG0269|consen  204 WDLRQPDRCEKKLTAHNGPVLCLNWHPNR  232 (839)
T ss_pred             eeccCchhHHHHhhcccCceEEEeecCCC
Confidence            9999765           99999999964

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=98.68  E-value=2.4e-07  Score=64.18  Aligned_cols=78  Identities=13%  Similarity=0.101  Sum_probs=60.6

Q ss_pred             ceeeecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEE------cCCCce-------------eccCCCcEEEEEecCCc
Q 036317            3 FDIFSDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLH------SFQGTL-------------PVSHNSTLEASFSQHLS   63 (106)
Q Consensus         3 ~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d------~~~~~~-------------~~~~~~~~~~~fs~d~~   63 (106)
                      |.-.++..+...|++++|+|.|...+++++.+++++..      ...+..             ..+.+++...+|||+| 
T Consensus        23 f~~i~~l~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~g-  101 (350)
T KOG0641|consen   23 FEAINILEDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCG-  101 (350)
T ss_pred             eEEEEEecchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCcc-
Confidence            43444445567999999999999999999999998653      333322             2356788889999999 


Q ss_pred             ceeeeeeecccEEEEecCCCcEEEEECC
Q 036317           64 LVALSVLILRSWVLEGSGDGSVYAWSAR   91 (106)
Q Consensus        64 ~~~~~~~~~~~~i~t~s~d~~i~~wd~~   91 (106)
                                +.|++||.|.+|++-...
T Consensus       102 ----------eliatgsndk~ik~l~fn  119 (350)
T KOG0641|consen  102 ----------ELIATGSNDKTIKVLPFN  119 (350)
T ss_pred             ----------CeEEecCCCceEEEEecc
Confidence                      999999999999987554

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.68  E-value=1.8e-07  Score=68.44  Aligned_cols=95  Identities=22%  Similarity=0.292  Sum_probs=66.6

Q ss_pred             CCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce-----eccCCC-cEEEEEecCC---ccee--------------
Q 036317           10 GDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL-----PVSHNS-TLEASFSQHL---SLVA--------------   66 (106)
Q Consensus        10 ~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~-----~~~~~~-~~~~~fs~d~---~~~~--------------   66 (106)
                      .|+++|.++.|||||+++++.+.+ ..+||+..+|..     +..... ...|-|+.|+   .|..              
T Consensus       184 ~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~  262 (398)
T KOG0771|consen  184 AHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCD  262 (398)
T ss_pred             hhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEE
Confidence            456799999999999999999999 899999998833     111111 1123333333   1111              


Q ss_pred             ------------------------eeeeecccEEEEecCCCcEEEEECCCCC-----------CCcEEEeCCCC
Q 036317           67 ------------------------LSVLILRSWVLEGSGDGSVYAWSARSGK-----------EPPVIKWAPGS  105 (106)
Q Consensus        67 ------------------------~~~~~~~~~i~t~s~d~~i~~wd~~~~~-----------~v~~i~~sp~~  105 (106)
                                              ++.....++++-|.-||.|.|++..+.+           .|..+.|+|+.
T Consensus       263 ~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pds  336 (398)
T KOG0771|consen  263 ISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDS  336 (398)
T ss_pred             eeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCc
Confidence                                    0111111899999999999999999887           88999999975

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.67  E-value=1e-07  Score=47.76  Aligned_cols=35  Identities=26%  Similarity=0.345  Sum_probs=32.2

Q ss_pred             eecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEE
Q 036317            6 FSDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLH   40 (106)
Q Consensus         6 ~~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d   40 (106)
                      ..+.+|.+.|++++|+|+++++++++.|+.+++||
T Consensus         5 ~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    5 RTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             EEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            45677889999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.66  E-value=4.4e-07  Score=63.21  Aligned_cols=91  Identities=18%  Similarity=0.243  Sum_probs=75.3

Q ss_pred             eecCCCCCCeeEEEECC--CCCeEEEEeCCCeEEEEEcCCCce------eccCCCcEEEEEecCCcceeeeeeecccEEE
Q 036317            6 FSDGGDVSDANEVKLSN--DGRLMLLTTLEGHIHVLHSFQGTL------PVSHNSTLEASFSQHLSLVALSVLILRSWVL   77 (106)
Q Consensus         6 ~~~~~~~~~v~~v~~sp--dg~~l~~~~~~~~i~l~d~~~~~~------~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~   77 (106)
                      -++.||.++|..++|.-  -|..|++++.|+.+-||.-+.|+.      ..+..++.+++|.|.+         +...++
T Consensus        50 ~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~waphe---------ygl~La  120 (299)
T KOG1332|consen   50 AELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHE---------YGLLLA  120 (299)
T ss_pred             eEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccc---------cceEEE
Confidence            45678889999999964  699999999999999999988865      3466788889888874         116789


Q ss_pred             EecCCCcEEEEECCCC-C------------CCcEEEeCCCC
Q 036317           78 EGSGDGSVYAWSARSG-K------------EPPVIKWAPGS  105 (106)
Q Consensus        78 t~s~d~~i~~wd~~~~-~------------~v~~i~~sp~~  105 (106)
                      +++.||.|.+.+.++. .            .|++++|.|..
T Consensus       121 casSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~  161 (299)
T KOG1332|consen  121 CASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPAS  161 (299)
T ss_pred             EeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcC
Confidence            9999999999998865 3            78899998863

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=98.66  E-value=1.8e-07  Score=66.95  Aligned_cols=84  Identities=13%  Similarity=0.315  Sum_probs=72.6

Q ss_pred             CCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce-------eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCc
Q 036317           12 VSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL-------PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGS   84 (106)
Q Consensus        12 ~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~-------~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~   84 (106)
                      ..+|++.+|++|+.-++++.++++++|+.......       ..|...++.+.|+|..           ..|++++.|..
T Consensus        10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~s-----------nrIvtcs~drn   78 (361)
T KOG1523|consen   10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKS-----------NRIVTCSHDRN   78 (361)
T ss_pred             cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCC-----------CceeEccCCCC
Confidence            45899999999999999999999999998776663       4466677889999999           99999999999


Q ss_pred             EEEEEC-CCCC------------CCcEEEeCCCCC
Q 036317           85 VYAWSA-RSGK------------EPPVIKWAPGSL  106 (106)
Q Consensus        85 i~~wd~-~~~~------------~v~~i~~sp~~~  106 (106)
                      .++|.. +.++            ...+++|+|+.+
T Consensus        79 ayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~en  113 (361)
T KOG1523|consen   79 AYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKEN  113 (361)
T ss_pred             ccccccCCCCeeccceeEEEeccceeeEeecCcCc
Confidence            999999 4454            789999999753

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=98.66  E-value=5.7e-08  Score=73.62  Aligned_cols=97  Identities=18%  Similarity=0.232  Sum_probs=65.1

Q ss_pred             cCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCccee-----------------
Q 036317            8 DGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVA-----------------   66 (106)
Q Consensus         8 ~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~-----------------   66 (106)
                      +..|.+.+.+-.|+|||.-+++++.||.|++|.- +|-+    -....++.++.|.|+.+-+.                 
T Consensus       100 v~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~n~k  178 (737)
T KOG1524|consen  100 ISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRCARWAPNSNSIVFCQGGHISIKPLAANSK  178 (737)
T ss_pred             hhhhhhhhhhcccCCCCceeeeecCCceEEEEec-cchHHHHHhhcCceeEEEEECCCCCceEEecCCeEEEeecccccc
Confidence            3455667888899999999999999999999973 3322    01111222333333322111                 


Q ss_pred             -------------eeeeecccEEEEecCCCcEEEEECCCCC---------CCcEEEeCCCC
Q 036317           67 -------------LSVLILRSWVLEGSGDGSVYAWSARSGK---------EPPVIKWAPGS  105 (106)
Q Consensus        67 -------------~~~~~~~~~i~t~s~d~~i~~wd~~~~~---------~v~~i~~sp~~  105 (106)
                                   +.|......|++|++|-..++||.....         +|.+++|+|.-
T Consensus       179 ~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~S~~~ey~ITSva~npd~  239 (737)
T KOG1524|consen  179 IIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFTSAAEEYAITSVAFNPEK  239 (737)
T ss_pred             eeEEeccCcEEEEeecCccccceeecCCceeEEeecccCcccccCChhccceeeeeecccc
Confidence                         1222222889999999999999987433         99999999973

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=98.65  E-value=3.5e-08  Score=76.13  Aligned_cols=74  Identities=9%  Similarity=0.143  Sum_probs=65.4

Q ss_pred             CCCCCeeEEEECCC-CCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCc
Q 036317           10 GDVSDANEVKLSND-GRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGS   84 (106)
Q Consensus        10 ~~~~~v~~v~~spd-g~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~   84 (106)
                      +|...|.++.|+|- .+.+++++.|-+|++||+.+++.    .+|.+.+..++|||||           +.++|.+.||+
T Consensus       675 ~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdG-----------r~~AtVcKDg~  743 (1012)
T KOG1445|consen  675 IHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDG-----------RRIATVCKDGT  743 (1012)
T ss_pred             cccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCC-----------cceeeeecCce
Confidence            34558999999996 56778999999999999998876    6678888899999999           99999999999


Q ss_pred             EEEEECCCCC
Q 036317           85 VYAWSARSGK   94 (106)
Q Consensus        85 i~~wd~~~~~   94 (106)
                      +++++-++++
T Consensus       744 ~rVy~Prs~e  753 (1012)
T KOG1445|consen  744 LRVYEPRSRE  753 (1012)
T ss_pred             EEEeCCCCCC
Confidence            9999988776

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=98.63  E-value=2.7e-07  Score=68.47  Aligned_cols=75  Identities=17%  Similarity=0.238  Sum_probs=64.1

Q ss_pred             CCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce--------------------e--ccCCCcEEEEEecCCcceee
Q 036317           10 GDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL--------------------P--VSHNSTLEASFSQHLSLVAL   67 (106)
Q Consensus        10 ~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~--------------------~--~~~~~~~~~~fs~d~~~~~~   67 (106)
                      .|.-.+.+|+++||+++.++++.+++|.=|++.+|+.                    +  .|...+..++.|+||     
T Consensus       140 ~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg-----  214 (479)
T KOG0299|consen  140 KHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG-----  214 (479)
T ss_pred             cccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC-----
Confidence            4455899999999999999999999999999888763                    1  233445678999999     


Q ss_pred             eeeecccEEEEecCCCcEEEEECCCCCC
Q 036317           68 SVLILRSWVLEGSGDGSVYAWSARSGKE   95 (106)
Q Consensus        68 ~~~~~~~~i~t~s~d~~i~~wd~~~~~~   95 (106)
                            +||++|+.|..|.||+.++++.
T Consensus       215 ------kylatgg~d~~v~Iw~~~t~eh  236 (479)
T KOG0299|consen  215 ------KYLATGGRDRHVQIWDCDTLEH  236 (479)
T ss_pred             ------cEEEecCCCceEEEecCcccch
Confidence                  9999999999999999999983

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=98.63  E-value=4.4e-08  Score=75.57  Aligned_cols=82  Identities=16%  Similarity=0.259  Sum_probs=67.8

Q ss_pred             CCeeEEEECC-CCCeEEEEeCCCeEEEEEcCCCce-----------eccCCCcEEEEEecCCcceeeeeeecccEEEEec
Q 036317           13 SDANEVKLSN-DGRLMLLTTLEGHIHVLHSFQGTL-----------PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGS   80 (106)
Q Consensus        13 ~~v~~v~~sp-dg~~l~~~~~~~~i~l~d~~~~~~-----------~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s   80 (106)
                      ..|+++.|+| |.+.+++++.|+.|++|.+..+-.           ..+...++.+.|+|-.          -..+++++
T Consensus       628 t~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLA----------advLa~as  697 (1012)
T KOG1445|consen  628 TLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLA----------ADVLAVAS  697 (1012)
T ss_pred             ceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchh----------hhHhhhhh
Confidence            3789999998 777899999999999999876544           2344567778888764          26788999


Q ss_pred             CCCcEEEEECCCCC----------CCcEEEeCCC
Q 036317           81 GDGSVYAWSARSGK----------EPPVIKWAPG  104 (106)
Q Consensus        81 ~d~~i~~wd~~~~~----------~v~~i~~sp~  104 (106)
                      +|.+|++||+.+++          .|-.++|||.
T Consensus       698 yd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpd  731 (1012)
T KOG1445|consen  698 YDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPD  731 (1012)
T ss_pred             ccceeeeeehhhhhhhheeccCcCceeEEEECCC
Confidence            99999999999987          8899999986

>PRK05137 tolB translocation protein TolB; Provisional

Probab=98.62  E-value=7.7e-07  Score=66.26  Aligned_cols=83  Identities=18%  Similarity=0.169  Sum_probs=60.3

Q ss_pred             CCCCeeEEEECCCCCeEEEEeC---CCeEEEEEcCCCce---eccCCCcEEEEEecCCcceeeeeeecccEEE-EecCCC
Q 036317           11 DVSDANEVKLSNDGRLMLLTTL---EGHIHVLHSFQGTL---PVSHNSTLEASFSQHLSLVALSVLILRSWVL-EGSGDG   83 (106)
Q Consensus        11 ~~~~v~~v~~spdg~~l~~~~~---~~~i~l~d~~~~~~---~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~-t~s~d~   83 (106)
                      +...+...+|||||+.++..+.   +..+++||+.+++.   ....+......|+|||           +.|+ +.+.++
T Consensus       200 ~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG-----------~~la~~~~~~g  268 (435)
T PRK05137        200 GSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDG-----------RKVVMSLSQGG  268 (435)
T ss_pred             CCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCC-----------CEEEEEEecCC
Confidence            3457899999999999887763   46899999988876   2233444568999999           7654 444554


Q ss_pred             --cEEEEECCCCC---------CCcEEEeCCC
Q 036317           84 --SVYAWSARSGK---------EPPVIKWAPG  104 (106)
Q Consensus        84 --~i~~wd~~~~~---------~v~~i~~sp~  104 (106)
                        .|++||+++++         ......|+|+
T Consensus       269 ~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spD  300 (435)
T PRK05137        269 NTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPD  300 (435)
T ss_pred             CceEEEEECCCCceEEccCCCCccCceeEcCC
Confidence              58888998776         3445677775

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.61  E-value=2.4e-07  Score=64.82  Aligned_cols=74  Identities=24%  Similarity=0.436  Sum_probs=59.2

Q ss_pred             CCCCeeEEEECCC-CCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcE
Q 036317           11 DVSDANEVKLSND-GRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSV   85 (106)
Q Consensus        11 ~~~~v~~v~~spd-g~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i   85 (106)
                      |+.+|.++.|++. ++.+++++.|++|++|+...++-    .++...+..+.|+|..          ...++++|.|+++
T Consensus       103 H~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~----------~nlfas~Sgd~~l  172 (311)
T KOG0277|consen  103 HKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHI----------PNLFASASGDGTL  172 (311)
T ss_pred             hhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCC----------CCeEEEccCCceE
Confidence            4569999999985 66678889999999999865544    4455566789999775          3788999999999


Q ss_pred             EEEECCC-CC
Q 036317           86 YAWSARS-GK   94 (106)
Q Consensus        86 ~~wd~~~-~~   94 (106)
                      ++||++. |+
T Consensus       173 ~lwdvr~~gk  182 (311)
T KOG0277|consen  173 RLWDVRSPGK  182 (311)
T ss_pred             EEEEecCCCc
Confidence            9999985 44

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=98.61  E-value=5.1e-07  Score=64.26  Aligned_cols=98  Identities=12%  Similarity=0.209  Sum_probs=65.0

Q ss_pred             cCCCCCCeeEEEECCCCC-eEEEEeCCCeEEEEEcCCCce-------eccCCCcEEEEEecC-Cccee------------
Q 036317            8 DGGDVSDANEVKLSNDGR-LMLLTTLEGHIHVLHSFQGTL-------PVSHNSTLEASFSQH-LSLVA------------   66 (106)
Q Consensus         8 ~~~~~~~v~~v~~spdg~-~l~~~~~~~~i~l~d~~~~~~-------~~~~~~~~~~~fs~d-~~~~~------------   66 (106)
                      +-.|+.+|.+++|..+|. .+++.+.||.++++|+.+-+.       +..+.+...++|.++ -+|+|            
T Consensus       192 LIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iL  271 (364)
T KOG0290|consen  192 LIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVIL  271 (364)
T ss_pred             EEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEE
Confidence            446678999999999765 457889999999999876543       111222333333322 11111            


Q ss_pred             ---------------------eeee-ecccEEEEecCCCcEEEEECCCCC---------------CCcEEEeCCCC
Q 036317           67 ---------------------LSVL-ILRSWVLEGSGDGSVYAWSARSGK---------------EPPVIKWAPGS  105 (106)
Q Consensus        67 ---------------------~~~~-~~~~~i~t~s~d~~i~~wd~~~~~---------------~v~~i~~sp~~  105 (106)
                                           ++|. -.+..|.|+++|..+.+||+...-               .|+.|.|+|..
T Consensus       272 DiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~  347 (364)
T KOG0290|consen  272 DIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQ  347 (364)
T ss_pred             EecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhccceeeeeeecccC
Confidence                                 1221 113689999999999999998642               78999998753

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=98.61  E-value=3.9e-07  Score=71.56  Aligned_cols=81  Identities=26%  Similarity=0.378  Sum_probs=69.9

Q ss_pred             CeeEEEECCCCCeEEEEeCCCeEEEEEcCC--Cce------eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcE
Q 036317           14 DANEVKLSNDGRLMLLTTLEGHIHVLHSFQ--GTL------PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSV   85 (106)
Q Consensus        14 ~v~~v~~spdg~~l~~~~~~~~i~l~d~~~--~~~------~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i   85 (106)
                      .++++++||.+++++++..||.|++|....  +..      .=|+..+...+|++||           .+|++|+..+-.
T Consensus       207 ~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G-----------~~LlSGG~E~VL  275 (792)
T KOG1963|consen  207 NITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDG-----------AYLLSGGREGVL  275 (792)
T ss_pred             cceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCC-----------ceEeecccceEE
Confidence            478999999999999999999999997433  221      2266788899999999           999999999999


Q ss_pred             EEEECCCCC---------CCcEEEeCCCC
Q 036317           86 YAWSARSGK---------EPPVIKWAPGS  105 (106)
Q Consensus        86 ~~wd~~~~~---------~v~~i~~sp~~  105 (106)
                      .+|.+++++         +|..+.++|+.
T Consensus       276 v~Wq~~T~~kqfLPRLgs~I~~i~vS~ds  304 (792)
T KOG1963|consen  276 VLWQLETGKKQFLPRLGSPILHIVVSPDS  304 (792)
T ss_pred             EEEeecCCCcccccccCCeeEEEEEcCCC
Confidence            999999987         88889999875

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.60  E-value=6.1e-07  Score=65.18  Aligned_cols=81  Identities=14%  Similarity=0.204  Sum_probs=65.9

Q ss_pred             CeeEEEECCCCCeEEEE--eCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCC-cEE
Q 036317           14 DANEVKLSNDGRLMLLT--TLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDG-SVY   86 (106)
Q Consensus        14 ~v~~v~~spdg~~l~~~--~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~-~i~   86 (106)
                      .+.++.+++.+.|++-=  ...|.|.|||..+-+.    ..|.+.+.+++|+++|           ..|||+|+-| -|+
T Consensus       131 gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G-----------~llATASeKGTVIR  199 (391)
T KOG2110|consen  131 GLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDG-----------TLLATASEKGTVIR  199 (391)
T ss_pred             ceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCC-----------CEEEEeccCceEEE
Confidence            56666666677788633  3569999999988766    5577788889999999           9999999998 579


Q ss_pred             EEECCCCC------------CCcEEEeCCCC
Q 036317           87 AWSARSGK------------EPPVIKWAPGS  105 (106)
Q Consensus        87 ~wd~~~~~------------~v~~i~~sp~~  105 (106)
                      ++.+.+|+            .|-+++|+|+.
T Consensus       200 Vf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds  230 (391)
T KOG2110|consen  200 VFSVPEGQKLYEFRRGTYPVSIYSLSFSPDS  230 (391)
T ss_pred             EEEcCCccEeeeeeCCceeeEEEEEEECCCC
Confidence            99999998            77889999874

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=98.59  E-value=2.6e-07  Score=69.68  Aligned_cols=80  Identities=15%  Similarity=0.208  Sum_probs=64.8

Q ss_pred             CCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce------eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEE
Q 036317           13 SDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL------PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVY   86 (106)
Q Consensus        13 ~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~------~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~   86 (106)
                      .-|+++.+.|||+.|++++.-.++.|||+.....      ....-.+.+++.+||.           +...++..||.|.
T Consensus       466 nyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDa-----------kvcFsccsdGnI~  534 (705)
T KOG0639|consen  466 NYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDA-----------KVCFSCCSDGNIA  534 (705)
T ss_pred             cceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCcc-----------ceeeeeccCCcEE
Confidence            4688999999999999999999999999876554      1122234468899999           9999999999999


Q ss_pred             EEECCCCC----------CCcEEEeCC
Q 036317           87 AWSARSGK----------EPPVIKWAP  103 (106)
Q Consensus        87 ~wd~~~~~----------~v~~i~~sp  103 (106)
                      |||+.+..          .+.||..++
T Consensus       535 vwDLhnq~~VrqfqGhtDGascIdis~  561 (705)
T KOG0639|consen  535 VWDLHNQTLVRQFQGHTDGASCIDISK  561 (705)
T ss_pred             EEEcccceeeecccCCCCCceeEEecC
Confidence            99999765          566776664

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=98.58  E-value=4.7e-07  Score=64.64  Aligned_cols=36  Identities=25%  Similarity=0.328  Sum_probs=31.4

Q ss_pred             CCCCCeeEEEECCC-CCeEEEEeCCCeEEEEEcCCCc
Q 036317           10 GDVSDANEVKLSND-GRLMLLTTLEGHIHVLHSFQGT   45 (106)
Q Consensus        10 ~~~~~v~~v~~spd-g~~l~~~~~~~~i~l~d~~~~~   45 (106)
                      .|.+.|++++..+. |+|+++++.|+.+.+||++...
T Consensus        41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t   77 (397)
T KOG4283|consen   41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNAT   77 (397)
T ss_pred             cCCCccceeeeccccceEEeecCCCccEEEEEecccc
Confidence            45679999999985 9999999999999999987654

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=98.57  E-value=4.8e-07  Score=69.40  Aligned_cols=72  Identities=19%  Similarity=0.303  Sum_probs=62.3

Q ss_pred             cCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCC
Q 036317            8 DGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDG   83 (106)
Q Consensus         8 ~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~   83 (106)
                      +.+|.+.|+++..+  +.++++++.|+.|++||+.+++.    .+|.+++.++.+.+.            ..+++|+.|+
T Consensus       327 ~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~------------~~~~Sgs~D~  392 (537)
T KOG0274|consen  327 LRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE------------NRLLSGSLDT  392 (537)
T ss_pred             eccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc------------ceEEeeeecc
Confidence            44578899999999  88899999999999999999887    567788888777753            4688999999


Q ss_pred             cEEEEECCCC
Q 036317           84 SVYAWSARSG   93 (106)
Q Consensus        84 ~i~~wd~~~~   93 (106)
                      +|++||+++.
T Consensus       393 ~IkvWdl~~~  402 (537)
T KOG0274|consen  393 TIKVWDLRTK  402 (537)
T ss_pred             ceEeecCCch
Confidence            9999999998

>KOG4328 consensus WD40 protein [Function unknown]

Probab=98.56  E-value=2.5e-07  Score=68.74  Aligned_cols=72  Identities=14%  Similarity=0.041  Sum_probs=58.0

Q ss_pred             CCCCCCeeEEEECCCC-CeEEEEeCCCeEEEEEcCCCce--------eccCCCcEEEEEecCCcceeeeeeecccEEEEe
Q 036317            9 GGDVSDANEVKLSNDG-RLMLLTTLEGHIHVLHSFQGTL--------PVSHNSTLEASFSQHLSLVALSVLILRSWVLEG   79 (106)
Q Consensus         9 ~~~~~~v~~v~~spdg-~~l~~~~~~~~i~l~d~~~~~~--------~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~   79 (106)
                      .-|+.+|++|+++|-. .++++++.|++.+|||...-..        ..|...+.++.|||++           -.|+|.
T Consensus       319 ~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~-----------gtl~TT  387 (498)
T KOG4328|consen  319 RLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSG-----------GTLLTT  387 (498)
T ss_pred             hhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCC-----------CceEee
Confidence            3345589999999965 5567889999999999875332        2345567789999999           889999


Q ss_pred             cCCCcEEEEECC
Q 036317           80 SGDGSVYAWSAR   91 (106)
Q Consensus        80 s~d~~i~~wd~~   91 (106)
                      +.|..|+|||..
T Consensus       388 ~~D~~IRv~dss  399 (498)
T KOG4328|consen  388 CQDNEIRVFDSS  399 (498)
T ss_pred             ccCCceEEeecc
Confidence            999999999994

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=98.56  E-value=2.1e-07  Score=68.74  Aligned_cols=87  Identities=16%  Similarity=0.206  Sum_probs=68.2

Q ss_pred             cCCCCCCeeEEEECCCCC-eEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCC
Q 036317            8 DGGDVSDANEVKLSNDGR-LMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGD   82 (106)
Q Consensus         8 ~~~~~~~v~~v~~spdg~-~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d   82 (106)
                      ..+|+..|-++.|+..-+ .|++++.|++|.+||+.+|+.    ..+.+.+..+.|+|..          ..++++|+.|
T Consensus       239 ~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~----------p~~LLsGs~D  308 (463)
T KOG0270|consen  239 ASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYE----------PSVLLSGSYD  308 (463)
T ss_pred             cccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCC----------ceEEEecccc
Confidence            345666777888887644 557889999999999999998    2244567789999886          4789999999


Q ss_pred             CcEEEEECCCCC----------CCcEEEeCCC
Q 036317           83 GSVYAWSARSGK----------EPPVIKWAPG  104 (106)
Q Consensus        83 ~~i~~wd~~~~~----------~v~~i~~sp~  104 (106)
                      ++|.+.|.+...          .|-.+.|+|.
T Consensus       309 ~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~  340 (463)
T KOG0270|consen  309 GTVALKDCRDPSNSGKEWKFDGEVEKVAWDPH  340 (463)
T ss_pred             ceEEeeeccCccccCceEEeccceEEEEecCC
Confidence            999999999422          7777777764

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=98.55  E-value=6.9e-08  Score=76.12  Aligned_cols=86  Identities=12%  Similarity=0.171  Sum_probs=77.6

Q ss_pred             cCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCC
Q 036317            8 DGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDG   83 (106)
Q Consensus         8 ~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~   83 (106)
                      +.+|.+.|.++.|+..|.++.++++|..++||..+++..    +++.+.+...+-+...           .+++++|.|.
T Consensus       186 LlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n-----------~~iaaaS~D~  254 (1113)
T KOG0644|consen  186 LLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNN-----------TMIAAASNDK  254 (1113)
T ss_pred             HHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhh-----------hhhhhcccCc
Confidence            457888999999999999999999999999999888876    7788888877778788           8999999999


Q ss_pred             cEEEEECCCCC----------CCcEEEeCCC
Q 036317           84 SVYAWSARSGK----------EPPVIKWAPG  104 (106)
Q Consensus        84 ~i~~wd~~~~~----------~v~~i~~sp~  104 (106)
                      -|++|.+.+|.          .|..|+|+|.
T Consensus       255 vIrvWrl~~~~pvsvLrghtgavtaiafsP~  285 (1113)
T KOG0644|consen  255 VIRVWRLPDGAPVSVLRGHTGAVTAIAFSPR  285 (1113)
T ss_pred             eEEEEecCCCchHHHHhccccceeeeccCcc
Confidence            99999999998          8899999996

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.54  E-value=1.1e-06  Score=66.86  Aligned_cols=72  Identities=13%  Similarity=0.103  Sum_probs=60.3

Q ss_pred             CCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce--eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEEE
Q 036317           12 VSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL--PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWS   89 (106)
Q Consensus        12 ~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~--~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd   89 (106)
                      .+.|.+++++|+.++++.++.||.+.+||...+..  ....-.+..++|+|+|           ..++.|++-|.+++||
T Consensus       259 ~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~ka~~~P~~iaWHp~g-----------ai~~V~s~qGelQ~FD  327 (545)
T PF11768_consen  259 PSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLAKAEFIPTLIAWHPDG-----------AIFVVGSEQGELQCFD  327 (545)
T ss_pred             CCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeeeeecccceEEEEcCCC-----------cEEEEEcCCceEEEEE
Confidence            45888999999999999999999999999877654  2222234569999999           9999999999999999


Q ss_pred             CCCCC
Q 036317           90 ARSGK   94 (106)
Q Consensus        90 ~~~~~   94 (106)
                      +--..
T Consensus       328 ~ALsp  332 (545)
T PF11768_consen  328 MALSP  332 (545)
T ss_pred             eecCc
Confidence            87543

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=98.54  E-value=4.6e-07  Score=69.01  Aligned_cols=77  Identities=19%  Similarity=0.236  Sum_probs=64.6

Q ss_pred             ecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce-----eccCCCcEEEEEecCCcceeeeeeecccEEEEecC
Q 036317            7 SDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL-----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSG   81 (106)
Q Consensus         7 ~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~-----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~   81 (106)
                      ++.||.+=|++++|+.||.+|++++.|-.+.|||....++     .+|..-+-++.|-|..         ..+.|++|..
T Consensus        45 eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~t---------nnriv~sgAg  115 (758)
T KOG1310|consen   45 ELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYT---------NNRIVLSGAG  115 (758)
T ss_pred             hhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccC---------CCeEEEeccC
Confidence            4578889999999999999999999999999999987666     3455556677887753         1278999999


Q ss_pred             CCcEEEEECCC
Q 036317           82 DGSVYAWSARS   92 (106)
Q Consensus        82 d~~i~~wd~~~   92 (106)
                      |..|+++|+.+
T Consensus       116 Dk~i~lfdl~~  126 (758)
T KOG1310|consen  116 DKLIKLFDLDS  126 (758)
T ss_pred             cceEEEEeccc
Confidence            99999999986

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.54  E-value=1.5e-07  Score=75.65  Aligned_cols=86  Identities=16%  Similarity=0.266  Sum_probs=66.1

Q ss_pred             CCCCCCeeEEEECCCCC-eEEEEeCCCeEEEEEcCCCceec------cCCCcEEEEEecCCcceeeeeeecccEEEEecC
Q 036317            9 GGDVSDANEVKLSNDGR-LMLLTTLEGHIHVLHSFQGTLPV------SHNSTLEASFSQHLSLVALSVLILRSWVLEGSG   81 (106)
Q Consensus         9 ~~~~~~v~~v~~spdg~-~l~~~~~~~~i~l~d~~~~~~~~------~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~   81 (106)
                      ..|++.|..++|++.+. .+++++.+|+|.|||+..-+.+.      ....+..++|...-          .+.+++++.
T Consensus       113 ~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkv----------qhILAS~s~  182 (1049)
T KOG0307|consen  113 SKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKV----------SHILASGSP  182 (1049)
T ss_pred             cccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhh----------hHHhhccCC
Confidence            35678999999999866 88899999999999997755422      22345567777554          156788899


Q ss_pred             CCcEEEEECCCCC------------CCcEEEeCCC
Q 036317           82 DGSVYAWSARSGK------------EPPVIKWAPG  104 (106)
Q Consensus        82 d~~i~~wd~~~~~------------~v~~i~~sp~  104 (106)
                      +|.+.|||++..+            .+..+.|+|+
T Consensus       183 sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~  217 (1049)
T KOG0307|consen  183 SGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPD  217 (1049)
T ss_pred             CCCceeccccCCCcccccccCCCccceeeeeeCCC
Confidence            9999999999876            3568888886

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=98.53  E-value=2.2e-07  Score=68.16  Aligned_cols=86  Identities=9%  Similarity=0.103  Sum_probs=66.9

Q ss_pred             cCCCCCCeeEEEECCCC-CeEEEEeCCCeEEEEEcCCCce-----------eccCCCcEEEEEecCCcceeeeeeecccE
Q 036317            8 DGGDVSDANEVKLSNDG-RLMLLTTLEGHIHVLHSFQGTL-----------PVSHNSTLEASFSQHLSLVALSVLILRSW   75 (106)
Q Consensus         8 ~~~~~~~v~~v~~spdg-~~l~~~~~~~~i~l~d~~~~~~-----------~~~~~~~~~~~fs~d~~~~~~~~~~~~~~   75 (106)
                      +.||+++|-+++|+|.. ..+|+++.|-++.||.+-.+-+           .+|...+--+.|+|..          ...
T Consensus        77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA----------~NV  146 (472)
T KOG0303|consen   77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTA----------PNV  146 (472)
T ss_pred             ccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccc----------hhh
Confidence            46888899999999964 4567888999999999765433           3455555568899886          467


Q ss_pred             EEEecCCCcEEEEECCCCC---------CCcEEEeCC
Q 036317           76 VLEGSGDGSVYAWSARSGK---------EPPVIKWAP  103 (106)
Q Consensus        76 i~t~s~d~~i~~wd~~~~~---------~v~~i~~sp  103 (106)
                      +++++.|.+|.+|++.+|+         .|.++.|+.
T Consensus       147 Llsag~Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~  183 (472)
T KOG0303|consen  147 LLSAGSDNTVSIWNVGTGEALITLDHPDMVYSMSFNR  183 (472)
T ss_pred             HhhccCCceEEEEeccCCceeeecCCCCeEEEEEecc
Confidence            8899999999999999998         556666654

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=98.53  E-value=3.3e-07  Score=65.19  Aligned_cols=82  Identities=17%  Similarity=0.224  Sum_probs=64.3

Q ss_pred             CCeeEEEECC--CCCeEEEEeCCCeEEEEEcCCCce----eccCC-CcEEEEEecCCcceeeeeeecccEEEEecCCCcE
Q 036317           13 SDANEVKLSN--DGRLMLLTTLEGHIHVLHSFQGTL----PVSHN-STLEASFSQHLSLVALSVLILRSWVLEGSGDGSV   85 (106)
Q Consensus        13 ~~v~~v~~sp--dg~~l~~~~~~~~i~l~d~~~~~~----~~~~~-~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i   85 (106)
                      ...++=+|||  ||. .+.+..++++..||..+.+.    ...++ .+..+.|.|+.          +.+|+|+++||.|
T Consensus       171 ~~ftsg~WspHHdgn-qv~tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnk----------q~~lvt~gDdgyv  239 (370)
T KOG1007|consen  171 HSFTSGAWSPHHDGN-QVATTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNK----------QHILVTCGDDGYV  239 (370)
T ss_pred             ceecccccCCCCccc-eEEEeCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCc----------eEEEEEcCCCccE
Confidence            3566778999  455 66777899999999998776    22332 45678999997          3468899999999


Q ss_pred             EEEECCCCC-----------CCcEEEeCCCC
Q 036317           86 YAWSARSGK-----------EPPVIKWAPGS  105 (106)
Q Consensus        86 ~~wd~~~~~-----------~v~~i~~sp~~  105 (106)
                      ++||.+.-+           ++.+++|+|-.
T Consensus       240 riWD~R~tk~pv~el~~HsHWvW~VRfn~~h  270 (370)
T KOG1007|consen  240 RIWDTRKTKFPVQELPGHSHWVWAVRFNPEH  270 (370)
T ss_pred             EEEeccCCCccccccCCCceEEEEEEecCcc
Confidence            999999766           88999999864

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=98.53  E-value=2.9e-07  Score=66.34  Aligned_cols=87  Identities=11%  Similarity=0.139  Sum_probs=72.7

Q ss_pred             ecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCC
Q 036317            7 SDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGD   82 (106)
Q Consensus         7 ~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d   82 (106)
                      .+.+|.+.|.+.+|=..|+-+++++.|.+..+||+++|++    .++......|+-+|..           +.++++|.|
T Consensus       267 ~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQ-----------rLVvTsSrD  335 (481)
T KOG0300|consen  267 RLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQ-----------RLVVTSSRD  335 (481)
T ss_pred             eeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcc-----------eEEEEeccC
Confidence            4567788899999999999999999999999999999998    4555566778889999           999999999


Q ss_pred             CcEEEEECCCCC-----------CCcEEEeCCC
Q 036317           83 GSVYAWSARSGK-----------EPPVIKWAPG  104 (106)
Q Consensus        83 ~~i~~wd~~~~~-----------~v~~i~~sp~  104 (106)
                      .+.++||.+...           .|.++.|+.+
T Consensus       336 tTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~d  368 (481)
T KOG0300|consen  336 TTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTD  368 (481)
T ss_pred             ceeEeccchhhcceeeeecccccceeEEEEecC
Confidence            999999998432           5556666543

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=98.53  E-value=2.1e-07  Score=71.45  Aligned_cols=74  Identities=15%  Similarity=0.180  Sum_probs=63.8

Q ss_pred             CCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce------eccCCCcEEEEEecCCcceeeeeeecccEEEEecCC
Q 036317            9 GGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL------PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGD   82 (106)
Q Consensus         9 ~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~------~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d   82 (106)
                      ..|.+.|.+++|-|....|++++.|.++++||+.+.++      .+|.+.+.+++|+|++          ...+++|+.|
T Consensus        97 ~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n----------~~vF~tGgRD  166 (720)
T KOG0321|consen   97 LAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTN----------PAVFCTGGRD  166 (720)
T ss_pred             ccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCC----------CcceeeccCC
Confidence            45678999999999777888999999999999998776      4577788889999988          3578899999


Q ss_pred             CcEEEEECCC
Q 036317           83 GSVYAWSARS   92 (106)
Q Consensus        83 ~~i~~wd~~~   92 (106)
                      |.|.|||++-
T Consensus       167 g~illWD~R~  176 (720)
T KOG0321|consen  167 GEILLWDCRC  176 (720)
T ss_pred             CcEEEEEEec
Confidence            9999999984

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=98.52  E-value=1.2e-06  Score=63.83  Aligned_cols=87  Identities=14%  Similarity=0.262  Sum_probs=67.3

Q ss_pred             eecCCCCCCeeEEEECCCCCeEEEEe-CCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEec
Q 036317            6 FSDGGDVSDANEVKLSNDGRLMLLTT-LEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGS   80 (106)
Q Consensus         6 ~~~~~~~~~v~~v~~spdg~~l~~~~-~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s   80 (106)
                      ++..+| ..|++++|.+||..+++++ .+..|.|||..++..    +..-+.+.-+.||||+           .++.++.
T Consensus       190 l~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdg-----------d~lfaAt  257 (445)
T KOG2139|consen  190 LQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDG-----------DVLFAAT  257 (445)
T ss_pred             eeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCC-----------CEEEEec
Confidence            333333 5999999999999998887 567899999998876    2344455668999999           9999999


Q ss_pred             CCCcEEEEECCCCC----------CCcEEEeCCC
Q 036317           81 GDGSVYAWSARSGK----------EPPVIKWAPG  104 (106)
Q Consensus        81 ~d~~i~~wd~~~~~----------~v~~i~~sp~  104 (106)
                      -|+..++|+.....          .|+.-.|+|.
T Consensus       258 ~davfrlw~e~q~wt~erw~lgsgrvqtacWspc  291 (445)
T KOG2139|consen  258 CDAVFRLWQENQSWTKERWILGSGRVQTACWSPC  291 (445)
T ss_pred             ccceeeeehhcccceecceeccCCceeeeeecCC
Confidence            99999999554322          6667777763

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.52  E-value=3.9e-07  Score=66.55  Aligned_cols=76  Identities=24%  Similarity=0.295  Sum_probs=60.0

Q ss_pred             CCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce-----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCc
Q 036317           10 GDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL-----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGS   84 (106)
Q Consensus        10 ~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~-----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~   84 (106)
                      ||-+.+..|+++||+++++++-.|..|++-....-..     .+|...+..++.-++            +.+++||.|++
T Consensus       149 GhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~------------~~LlS~sGD~t  216 (390)
T KOG3914|consen  149 GHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN------------YLLLSGSGDKT  216 (390)
T ss_pred             hhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC------------ceeeecCCCCc
Confidence            5566899999999999999999999999876533222     456666666666654            56899999999


Q ss_pred             EEEEECCCCCCCc
Q 036317           85 VYAWSARSGKEPP   97 (106)
Q Consensus        85 i~~wd~~~~~~v~   97 (106)
                      +++||+++|+...
T Consensus       217 lr~Wd~~sgk~L~  229 (390)
T KOG3914|consen  217 LRLWDITSGKLLD  229 (390)
T ss_pred             EEEEecccCCccc
Confidence            9999999998333

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=98.52  E-value=7.6e-07  Score=67.46  Aligned_cols=78  Identities=15%  Similarity=0.166  Sum_probs=64.9

Q ss_pred             eeecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce---------------eccCCCcEEEEEecCCcceeeee
Q 036317            5 IFSDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL---------------PVSHNSTLEASFSQHLSLVALSV   69 (106)
Q Consensus         5 ~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~---------------~~~~~~~~~~~fs~d~~~~~~~~   69 (106)
                      +|++.+|.++|-++.+++.++++++++.|++|+.|++. ...               .++...+..+.+|+..       
T Consensus       337 i~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p-~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~-------  408 (577)
T KOG0642|consen  337 ILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLP-PNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTK-------  408 (577)
T ss_pred             eEEEecccCceEEEEecCCceEEEeeccCceeeeeccC-CCCCcccccCcchhccceeccccceeeeeecccc-------
Confidence            57788999999999999999999999999999999654 211               3455555667788877       


Q ss_pred             eecccEEEEecCCCcEEEEECCCCC
Q 036317           70 LILRSWVLEGSGDGSVYAWSARSGK   94 (106)
Q Consensus        70 ~~~~~~i~t~s~d~~i~~wd~~~~~   94 (106)
                          .+|+++|.||++++|+.....
T Consensus       409 ----~~Llscs~DgTvr~w~~~~~~  429 (577)
T KOG0642|consen  409 ----DRLLSCSSDGTVRLWEPTEES  429 (577)
T ss_pred             ----cceeeecCCceEEeeccCCcC
Confidence                889999999999999987655

>PRK03629 tolB translocation protein TolB; Provisional

Probab=98.51  E-value=2.6e-06  Score=63.53  Aligned_cols=81  Identities=19%  Similarity=0.192  Sum_probs=58.6

Q ss_pred             CCeeEEEECCCCCeEEEEe---CCCeEEEEEcCCCce---eccCCCcEEEEEecCCcceeeeeeecccEEEEe-cCCC--
Q 036317           13 SDANEVKLSNDGRLMLLTT---LEGHIHVLHSFQGTL---PVSHNSTLEASFSQHLSLVALSVLILRSWVLEG-SGDG--   83 (106)
Q Consensus        13 ~~v~~v~~spdg~~l~~~~---~~~~i~l~d~~~~~~---~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~-s~d~--   83 (106)
                      ..+.+.+|||||+.++..+   .+..++++|+.+++.   ....+......|||||           +.|+.. +.++  
T Consensus       199 ~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG-----------~~La~~~~~~g~~  267 (429)
T PRK03629        199 QPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDG-----------SKLAFALSKTGSL  267 (429)
T ss_pred             CceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCC-----------CEEEEEEcCCCCc
Confidence            4688999999999998664   345789999988865   2122333458999999           766643 3344  


Q ss_pred             cEEEEECCCCC---------CCcEEEeCCC
Q 036317           84 SVYAWSARSGK---------EPPVIKWAPG  104 (106)
Q Consensus        84 ~i~~wd~~~~~---------~v~~i~~sp~  104 (106)
                      .|++||+++++         .+....|+|+
T Consensus       268 ~I~~~d~~tg~~~~lt~~~~~~~~~~wSPD  297 (429)
T PRK03629        268 NLYVMDLASGQIRQVTDGRSNNTEPTWFPD  297 (429)
T ss_pred             EEEEEECCCCCEEEccCCCCCcCceEECCC
Confidence            59999998876         4567788876

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=98.51  E-value=1.1e-06  Score=67.69  Aligned_cols=81  Identities=17%  Similarity=0.238  Sum_probs=62.5

Q ss_pred             CCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce-e-------c-cC-CC--cEEEEEecCCcceeeeeeecccEEEEe
Q 036317           12 VSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL-P-------V-SH-NS--TLEASFSQHLSLVALSVLILRSWVLEG   79 (106)
Q Consensus        12 ~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~-~-------~-~~-~~--~~~~~fs~d~~~~~~~~~~~~~~i~t~   79 (106)
                      +++|-+++|+|++.+++.|+.|+.|++||+.++.. .       . .+ ..  +.++.|=.|            ..|++|
T Consensus       154 ~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd------------~tI~sg  221 (691)
T KOG2048|consen  154 KSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD------------STIASG  221 (691)
T ss_pred             cceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec------------CcEEEe
Confidence            56899999999999999999999999999988765 1       0 11 11  223333344            479999


Q ss_pred             cCCCcEEEEECCCCC----------CCcEEEeCCC
Q 036317           80 SGDGSVYAWSARSGK----------EPPVIKWAPG  104 (106)
Q Consensus        80 s~d~~i~~wd~~~~~----------~v~~i~~sp~  104 (106)
                      +.-|+|.+||.+.|.          .|.+++-+++
T Consensus       222 DS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~  256 (691)
T KOG2048|consen  222 DSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADN  256 (691)
T ss_pred             cCCceEEEEcccCcchhhhhhhhhcceeEEEEcCC
Confidence            999999999999987          6677766654

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=98.48  E-value=1.1e-06  Score=68.51  Aligned_cols=87  Identities=18%  Similarity=0.240  Sum_probs=69.3

Q ss_pred             ecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCC-Cce---------------------------------------
Q 036317            7 SDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQ-GTL---------------------------------------   46 (106)
Q Consensus         7 ~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~-~~~---------------------------------------   46 (106)
                      .+.+|+.-|++|+|+.||+.+++++.|+.+-+|+.+. |.+                                       
T Consensus        48 tLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~  127 (1081)
T KOG1538|consen   48 PLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVS  127 (1081)
T ss_pred             ccccccceEEEEEEccCCceeccCCCceeEEEecccccceeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHH
Confidence            4678888999999999999999999999999998542 222                                       


Q ss_pred             -eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEEECCCCC-------------CCcEEEeCCCC
Q 036317           47 -PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSARSGK-------------EPPVIKWAPGS  105 (106)
Q Consensus        47 -~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd~~~~~-------------~v~~i~~sp~~  105 (106)
                       .....++++|+|..||           ++++-|..||+|.+=+-. |+             +|.+++|+|.+
T Consensus       128 K~kss~R~~~CsWtnDG-----------qylalG~~nGTIsiRNk~-gEek~~I~Rpgg~Nspiwsi~~~p~s  188 (1081)
T KOG1538|consen  128 KHKSSSRIICCSWTNDG-----------QYLALGMFNGTISIRNKN-GEEKVKIERPGGSNSPIWSICWNPSS  188 (1081)
T ss_pred             hhhhheeEEEeeecCCC-----------cEEEEeccCceEEeecCC-CCcceEEeCCCCCCCCceEEEecCCC
Confidence             0113356678999999           999999999999887543 32             89999999975

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=98.48  E-value=2.2e-06  Score=64.70  Aligned_cols=80  Identities=18%  Similarity=0.300  Sum_probs=61.2

Q ss_pred             CeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce---eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEEEC
Q 036317           14 DANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL---PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSA   90 (106)
Q Consensus        14 ~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~---~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd~   90 (106)
                      ++.+++|+|.| .+++++..|.-.+.|.++...   ......+..+.|+|+|           .+++.|+.|+.|++|.+
T Consensus       409 ~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G-----------~~lAvgs~d~~iyiy~V  476 (626)
T KOG2106|consen  409 PAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDG-----------AFLAVGSHDNHIYIYRV  476 (626)
T ss_pred             ceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEecCCceEEEEEcCCC-----------CEEEEecCCCeEEEEEE
Confidence            56677777777 677777777777777777554   2233445568999999           99999999999999998


Q ss_pred             CCCC------------CCcEEEeCCCC
Q 036317           91 RSGK------------EPPVIKWAPGS  105 (106)
Q Consensus        91 ~~~~------------~v~~i~~sp~~  105 (106)
                      ..+.            +|.-++||+++
T Consensus       477 s~~g~~y~r~~k~~gs~ithLDwS~Ds  503 (626)
T KOG2106|consen  477 SANGRKYSRVGKCSGSPITHLDWSSDS  503 (626)
T ss_pred             CCCCcEEEEeeeecCceeEEeeecCCC
Confidence            8543            78888998875

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=98.47  E-value=2.1e-06  Score=61.20  Aligned_cols=73  Identities=15%  Similarity=0.176  Sum_probs=61.2

Q ss_pred             CCCeeEEEECC-CCCeEEEEeCCCeEEEEEcCCCce-------eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCC
Q 036317           12 VSDANEVKLSN-DGRLMLLTTLEGHIHVLHSFQGTL-------PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDG   83 (106)
Q Consensus        12 ~~~v~~v~~sp-dg~~l~~~~~~~~i~l~d~~~~~~-------~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~   83 (106)
                      ..+++++.|+- |-+++.+++-|-+..|||++++..       ..|.+.+..++|+.++          ++.+++.++||
T Consensus       150 ~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s----------~~~FASvgaDG  219 (364)
T KOG0290|consen  150 CAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGS----------RDVFASVGADG  219 (364)
T ss_pred             CCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCc----------cceEEEecCCC
Confidence            34889999974 678888999999999999998732       4567788899999877          56889999999


Q ss_pred             cEEEEECCCCC
Q 036317           84 SVYAWSARSGK   94 (106)
Q Consensus        84 ~i~~wd~~~~~   94 (106)
                      +++++|++.-+
T Consensus       220 SvRmFDLR~le  230 (364)
T KOG0290|consen  220 SVRMFDLRSLE  230 (364)
T ss_pred             cEEEEEecccc
Confidence            99999999765

>PRK04922 tolB translocation protein TolB; Provisional

Probab=98.46  E-value=2.3e-06  Score=63.76  Aligned_cols=82  Identities=22%  Similarity=0.215  Sum_probs=58.6

Q ss_pred             CCCeeEEEECCCCCeEEEEeCC---CeEEEEEcCCCce---eccCCCcEEEEEecCCcceeeeeeecccEEE-EecCCC-
Q 036317           12 VSDANEVKLSNDGRLMLLTTLE---GHIHVLHSFQGTL---PVSHNSTLEASFSQHLSLVALSVLILRSWVL-EGSGDG-   83 (106)
Q Consensus        12 ~~~v~~v~~spdg~~l~~~~~~---~~i~l~d~~~~~~---~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~-t~s~d~-   83 (106)
                      ...+.+.+|+|||++++..+.+   ..+.+||+.+++.   ....+......|+|||           +.|+ +.+.++ 
T Consensus       203 ~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG-----------~~l~~~~s~~g~  271 (433)
T PRK04922        203 AEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDG-----------RRLALTLSRDGN  271 (433)
T ss_pred             CCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCC-----------CEEEEEEeCCCC
Confidence            3468889999999999877643   4799999988876   1122333468999999           6654 334444 


Q ss_pred             -cEEEEECCCCC---------CCcEEEeCCC
Q 036317           84 -SVYAWSARSGK---------EPPVIKWAPG  104 (106)
Q Consensus        84 -~i~~wd~~~~~---------~v~~i~~sp~  104 (106)
                       .|++||+.+++         .....+|+|+
T Consensus       272 ~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spD  302 (433)
T PRK04922        272 PEIYVMDLGSRQLTRLTNHFGIDTEPTWAPD  302 (433)
T ss_pred             ceEEEEECCCCCeEECccCCCCccceEECCC
Confidence             69999999886         2345778875

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=98.46  E-value=7.6e-07  Score=66.32  Aligned_cols=70  Identities=26%  Similarity=0.467  Sum_probs=62.5

Q ss_pred             CeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce---eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEEEC
Q 036317           14 DANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL---PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSA   90 (106)
Q Consensus        14 ~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~---~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd~   90 (106)
                      .+..++.||++++++..+..|.|+|....+++.   ....+.+.+..|+.|+           +.|+..+.+|.|++||+
T Consensus       305 ~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSds-----------k~l~~~~~~GeV~v~nl  373 (514)
T KOG2055|consen  305 SMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDS-----------KELLASGGTGEVYVWNL  373 (514)
T ss_pred             hhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCC-----------cEEEEEcCCceEEEEec
Confidence            678999999999999999999999999999988   2245567789999999           99999999999999999


Q ss_pred             CCCC
Q 036317           91 RSGK   94 (106)
Q Consensus        91 ~~~~   94 (106)
                      +...
T Consensus       374 ~~~~  377 (514)
T KOG2055|consen  374 RQNS  377 (514)
T ss_pred             CCcc
Confidence            9765

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.45  E-value=7e-07  Score=44.58  Aligned_cols=32  Identities=22%  Similarity=0.422  Sum_probs=29.2

Q ss_pred             eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEEE
Q 036317           47 PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWS   89 (106)
Q Consensus        47 ~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd   89 (106)
                      ..+.+.+.+++|+|++           .+|++++.|++|++||
T Consensus         8 ~~h~~~i~~i~~~~~~-----------~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    8 RGHSSSINSIAWSPDG-----------NFLASGSSDGTIRVWD   39 (39)
T ss_dssp             ESSSSSEEEEEEETTS-----------SEEEEEETTSEEEEEE
T ss_pred             cCCCCcEEEEEEeccc-----------ccceeeCCCCEEEEEC
Confidence            3567788999999999           9999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=98.44  E-value=1.8e-06  Score=65.24  Aligned_cols=81  Identities=11%  Similarity=0.156  Sum_probs=64.5

Q ss_pred             CCeeEEEECCCCCeEE-EEeCCCeEEEEEcCCCce-----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEE
Q 036317           13 SDANEVKLSNDGRLML-LTTLEGHIHVLHSFQGTL-----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVY   86 (106)
Q Consensus        13 ~~v~~v~~spdg~~l~-~~~~~~~i~l~d~~~~~~-----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~   86 (106)
                      ..|+.+.|||-.++++ +++.+|.+++||......     ..|..+...++|+|..          +..+++.+.|..|+
T Consensus       165 qsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsn----------e~l~vsVG~Dkki~  234 (673)
T KOG4378|consen  165 QSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSN----------EALLVSVGYDKKIN  234 (673)
T ss_pred             CeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCc----------cceEEEecccceEE
Confidence            3678999999998886 567889999999866554     4466666789999987          46788999999999


Q ss_pred             EEECCCCC---------CCcEEEeCC
Q 036317           87 AWSARSGK---------EPPVIKWAP  103 (106)
Q Consensus        87 ~wd~~~~~---------~v~~i~~sp  103 (106)
                      +||..+.+         +...++|+|
T Consensus       235 ~yD~~s~~s~~~l~y~~Plstvaf~~  260 (673)
T KOG4378|consen  235 IYDIRSQASTDRLTYSHPLSTVAFSE  260 (673)
T ss_pred             EeecccccccceeeecCCcceeeecC
Confidence            99999776         555555554

>PRK02889 tolB translocation protein TolB; Provisional

Probab=98.44  E-value=4.2e-06  Score=62.35  Aligned_cols=82  Identities=16%  Similarity=0.083  Sum_probs=57.2

Q ss_pred             CCCeeEEEECCCCCeEEEEeCC---CeEEEEEcCCCce---eccCCCcEEEEEecCCcceeeeeeecccEEE-EecCCCc
Q 036317           12 VSDANEVKLSNDGRLMLLTTLE---GHIHVLHSFQGTL---PVSHNSTLEASFSQHLSLVALSVLILRSWVL-EGSGDGS   84 (106)
Q Consensus        12 ~~~v~~v~~spdg~~l~~~~~~---~~i~l~d~~~~~~---~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~-t~s~d~~   84 (106)
                      ...+.+.+|||||+.++..+.+   ..+.+||+.+++.   ....+......|+|||           +.|+ +.+.++.
T Consensus       195 ~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG-----------~~la~~~~~~g~  263 (427)
T PRK02889        195 PEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDG-----------RTLAVALSRDGN  263 (427)
T ss_pred             CCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCC-----------CEEEEEEccCCC
Confidence            4578899999999999877643   4699999988876   2223344568999999           7765 4566776


Q ss_pred             EEEE--ECCCCC---------CCcEEEeCCC
Q 036317           85 VYAW--SARSGK---------EPPVIKWAPG  104 (106)
Q Consensus        85 i~~w--d~~~~~---------~v~~i~~sp~  104 (106)
                      ..+|  |+.+++         ......|+|+
T Consensus       264 ~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpD  294 (427)
T PRK02889        264 SQIYTVNADGSGLRRLTQSSGIDTEPFFSPD  294 (427)
T ss_pred             ceEEEEECCCCCcEECCCCCCCCcCeEEcCC
Confidence            5555  555443         2345678775

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.43  E-value=8.4e-07  Score=71.40  Aligned_cols=81  Identities=15%  Similarity=0.282  Sum_probs=68.0

Q ss_pred             CCeeEEEECCCCCe----EEEEeCCCeEEEEEcCC---Cc-e------eccCCCcEEEEEecCCcceeeeeeeccc-EEE
Q 036317           13 SDANEVKLSNDGRL----MLLTTLEGHIHVLHSFQ---GT-L------PVSHNSTLEASFSQHLSLVALSVLILRS-WVL   77 (106)
Q Consensus        13 ~~v~~v~~spdg~~----l~~~~~~~~i~l~d~~~---~~-~------~~~~~~~~~~~fs~d~~~~~~~~~~~~~-~i~   77 (106)
                      .+.+.++|.+-|..    ++.+..||.|-+||...   +. .      ..|++.+..+.|.+.+           . .++
T Consensus        65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q-----------~nlLA  133 (1049)
T KOG0307|consen   65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQ-----------GNLLA  133 (1049)
T ss_pred             ccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccC-----------Cceee
Confidence            47889999988877    78888999999999755   22 1      5588899999999988           5 999


Q ss_pred             EecCCCcEEEEECCCCC------------CCcEEEeCCC
Q 036317           78 EGSGDGSVYAWSARSGK------------EPPVIKWAPG  104 (106)
Q Consensus        78 t~s~d~~i~~wd~~~~~------------~v~~i~~sp~  104 (106)
                      +|+.||.|.|||+..-+            .|.+++|+.+
T Consensus       134 SGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrk  172 (1049)
T KOG0307|consen  134 SGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRK  172 (1049)
T ss_pred             ccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchh
Confidence            99999999999998755            7899999864

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=98.43  E-value=2.2e-06  Score=63.81  Aligned_cols=81  Identities=23%  Similarity=0.276  Sum_probs=65.2

Q ss_pred             CCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCc------------e--------eccCC--CcEEEEEecCCcceeeee
Q 036317           12 VSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGT------------L--------PVSHN--STLEASFSQHLSLVALSV   69 (106)
Q Consensus        12 ~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~------------~--------~~~~~--~~~~~~fs~d~~~~~~~~   69 (106)
                      +..+.+++++|-++.+.+++.+|.|.+.+...-.            .        .++.+  .+++++++-||       
T Consensus       217 p~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~Dg-------  289 (476)
T KOG0646|consen  217 PSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDG-------  289 (476)
T ss_pred             CCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCc-------
Confidence            3578999999999999999999999988754322            0        23444  67789999999       


Q ss_pred             eecccEEEEecCCCcEEEEECCCCC----------CCcEEEeCC
Q 036317           70 LILRSWVLEGSGDGSVYAWSARSGK----------EPPVIKWAP  103 (106)
Q Consensus        70 ~~~~~~i~t~s~d~~i~~wd~~~~~----------~v~~i~~sp  103 (106)
                          ..+++|++||.|.+||+.+.+          +|+.+.+.|
T Consensus       290 ----tlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~  329 (476)
T KOG0646|consen  290 ----TLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINP  329 (476)
T ss_pred             ----cEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeec
Confidence                999999999999999999877          566666633

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=98.43  E-value=1.7e-06  Score=65.32  Aligned_cols=85  Identities=13%  Similarity=0.223  Sum_probs=68.9

Q ss_pred             CCCCCCeeEEEECCCCCe-EEEEeCCCeEEEEEcCCCce---eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCc
Q 036317            9 GGDVSDANEVKLSNDGRL-MLLTTLEGHIHVLHSFQGTL---PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGS   84 (106)
Q Consensus         9 ~~~~~~v~~v~~spdg~~-l~~~~~~~~i~l~d~~~~~~---~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~   84 (106)
                      +.|..+...+.|+|-.+. +++.+.|+.|.+||....+.   .....+...++|+++|           .+++.|...|.
T Consensus       205 ~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G-----------~~L~aG~s~G~  273 (673)
T KOG4378|consen  205 EAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHPLSTVAFSECG-----------TYLCAGNSKGE  273 (673)
T ss_pred             hhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeecCCcceeeecCCc-----------eEEEeecCCce
Confidence            345568899999997654 46789999999999876555   3345566789999999           99999999999


Q ss_pred             EEEEECCCCC-----------CCcEEEeCCC
Q 036317           85 VYAWSARSGK-----------EPPVIKWAPG  104 (106)
Q Consensus        85 i~~wd~~~~~-----------~v~~i~~sp~  104 (106)
                      |..||++.-+           .|.+++|-|.
T Consensus       274 ~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s  304 (673)
T KOG4378|consen  274 LIAYDMRSTKAPVAVRSAHDASVTRVAFQPS  304 (673)
T ss_pred             EEEEecccCCCCceEeeecccceeEEEeeec
Confidence            9999999766           7788888553

>PRK00178 tolB translocation protein TolB; Provisional

Probab=98.42  E-value=5.8e-06  Score=61.25  Aligned_cols=81  Identities=19%  Similarity=0.142  Sum_probs=57.0

Q ss_pred             CCeeEEEECCCCCeEEEEeCC---CeEEEEEcCCCce---eccCCCcEEEEEecCCcceeeeeeecccEEE-EecCCC--
Q 036317           13 SDANEVKLSNDGRLMLLTTLE---GHIHVLHSFQGTL---PVSHNSTLEASFSQHLSLVALSVLILRSWVL-EGSGDG--   83 (106)
Q Consensus        13 ~~v~~v~~spdg~~l~~~~~~---~~i~l~d~~~~~~---~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~-t~s~d~--   83 (106)
                      ..+...+|||||++++..+.+   ..+.++|..+++.   ....+......|+|||           +.|+ +.+.++  
T Consensus       199 ~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG-----------~~la~~~~~~g~~  267 (430)
T PRK00178        199 EPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDG-----------SKLAFVLSKDGNP  267 (430)
T ss_pred             CceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCC-----------CEEEEEEccCCCc
Confidence            467888999999999876644   4688999988876   2222333458999999           6665 334444  


Q ss_pred             cEEEEECCCCC---------CCcEEEeCCC
Q 036317           84 SVYAWSARSGK---------EPPVIKWAPG  104 (106)
Q Consensus        84 ~i~~wd~~~~~---------~v~~i~~sp~  104 (106)
                      .|++||+++++         ......|+|+
T Consensus       268 ~Iy~~d~~~~~~~~lt~~~~~~~~~~~spD  297 (430)
T PRK00178        268 EIYVMDLASRQLSRVTNHPAIDTEPFWGKD  297 (430)
T ss_pred             eEEEEECCCCCeEEcccCCCCcCCeEECCC
Confidence            68889998876         2345667775

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.42  E-value=3.3e-06  Score=61.78  Aligned_cols=90  Identities=13%  Similarity=0.074  Sum_probs=74.5

Q ss_pred             CceeeecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce-----eccCCCcEEEEEecCCcceeeeeeecccEE
Q 036317            2 PFDIFSDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL-----PVSHNSTLEASFSQHLSLVALSVLILRSWV   76 (106)
Q Consensus         2 ~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~-----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i   76 (106)
                      |+..|.+.  ..+++++...|+|+.++++...+++..+|..+++.     .+-.+++.++..+|.+           +++
T Consensus       239 PV~~fd~~--E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~-----------~~l  305 (412)
T KOG3881|consen  239 PVAQFDFL--ENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTH-----------PVL  305 (412)
T ss_pred             ceeEeccc--cCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCC-----------ceE
Confidence            44455443  45899999999999999999999999999999888     3456778889999999           999


Q ss_pred             EEecCCCcEEEEECCCCC---------CCcEEEeCCC
Q 036317           77 LEGSGDGSVYAWSARSGK---------EPPVIKWAPG  104 (106)
Q Consensus        77 ~t~s~d~~i~~wd~~~~~---------~v~~i~~sp~  104 (106)
                      ++++-|+.++|+|+++.+         .+++|-+.+.
T Consensus       306 as~GLDRyvRIhD~ktrkll~kvYvKs~lt~il~~~~  342 (412)
T KOG3881|consen  306 ASCGLDRYVRIHDIKTRKLLHKVYVKSRLTFILLRDD  342 (412)
T ss_pred             EeeccceeEEEeecccchhhhhhhhhccccEEEecCC
Confidence            999999999999999955         5566655443

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=98.40  E-value=1.3e-06  Score=66.32  Aligned_cols=49  Identities=12%  Similarity=0.053  Sum_probs=43.7

Q ss_pred             CCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEec
Q 036317           12 VSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQ   60 (106)
Q Consensus        12 ~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~   60 (106)
                      .+..-+|.|||||+|+++++.|.-+.||....+++    ++|+.++..++|.|
T Consensus       332 FGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  332 FGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP  384 (636)
T ss_pred             ccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence            45788999999999999999999999999999888    66777888888885

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=98.39  E-value=6.9e-06  Score=57.06  Aligned_cols=77  Identities=22%  Similarity=0.389  Sum_probs=62.1

Q ss_pred             ecCCCCCCeeEEEECCCCCeEEEEeC-CCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeeccc-EEEEec
Q 036317            7 SDGGDVSDANEVKLSNDGRLMLLTTL-EGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRS-WVLEGS   80 (106)
Q Consensus         7 ~~~~~~~~v~~v~~spdg~~l~~~~~-~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~-~i~t~s   80 (106)
                      .+..+...|..++|+|+++++++++. ++.+++|+..++..    ..+...+..+.|+|++           . .+++++
T Consensus       150 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----------~~~~~~~~  218 (466)
T COG2319         150 TLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDG-----------GLLIASGS  218 (466)
T ss_pred             EEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCc-----------ceEEEEec
Confidence            34566778999999999998888875 99999999987554    3345667789999999           7 566669


Q ss_pred             CCCcEEEEECCCCC
Q 036317           81 GDGSVYAWSARSGK   94 (106)
Q Consensus        81 ~d~~i~~wd~~~~~   94 (106)
                      .|+.|++||...++
T Consensus       219 ~d~~i~~wd~~~~~  232 (466)
T COG2319         219 SDGTIRLWDLSTGK  232 (466)
T ss_pred             CCCcEEEEECCCCc
Confidence            99999999888665

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=98.38  E-value=3.2e-06  Score=62.18  Aligned_cols=71  Identities=18%  Similarity=0.284  Sum_probs=52.1

Q ss_pred             eEEEECCCCCeEEEEeCCCeEEEEEcCCCce--ecc-CCCcEEEEEecCCcceeeeeeecccEEEEec-CCCcEEEEECC
Q 036317           16 NEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL--PVS-HNSTLEASFSQHLSLVALSVLILRSWVLEGS-GDGSVYAWSAR   91 (106)
Q Consensus        16 ~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~--~~~-~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s-~d~~i~~wd~~   91 (106)
                      ..+.|+|||+++.+++.|+.+.++|+.+++.  ... -.....+++|+||           ++++.++ .++.+.++|.+
T Consensus        40 ~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~DG-----------~~~~v~n~~~~~v~v~D~~  108 (369)
T PF02239_consen   40 AGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAVSPDG-----------KYVYVANYEPGTVSVIDAE  108 (369)
T ss_dssp             EEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE--TT-----------TEEEEEEEETTEEEEEETT
T ss_pred             eEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEEcCCC-----------CEEEEEecCCCceeEeccc
Confidence            4578999999999999999999999999987  111 2234679999999           9888775 57899999999


Q ss_pred             CCCCCc
Q 036317           92 SGKEPP   97 (106)
Q Consensus        92 ~~~~v~   97 (106)
                      +.+.+.
T Consensus       109 tle~v~  114 (369)
T PF02239_consen  109 TLEPVK  114 (369)
T ss_dssp             T--EEE
T ss_pred             ccccee
Confidence            988443

...

>PRK03629 tolB translocation protein TolB; Provisional

Probab=98.38  E-value=7.2e-06  Score=61.20  Aligned_cols=80  Identities=15%  Similarity=0.210  Sum_probs=54.6

Q ss_pred             CeeEEEECCCCCeEEEEe-CCC--eEEEEEcCCCce---eccCCCcEEEEEecCCcceeeeeeecccEEEEecCC-C--c
Q 036317           14 DANEVKLSNDGRLMLLTT-LEG--HIHVLHSFQGTL---PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGD-G--S   84 (106)
Q Consensus        14 ~v~~v~~spdg~~l~~~~-~~~--~i~l~d~~~~~~---~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d-~--~   84 (106)
                      .+...+|||||++++... .++  .+++||..+++.   ...........|+|||           +.|+..+.+ +  .
T Consensus       244 ~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG-----------~~I~f~s~~~g~~~  312 (429)
T PRK03629        244 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDS-----------QNLAYTSDQAGRPQ  312 (429)
T ss_pred             CcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCC-----------CEEEEEeCCCCCce
Confidence            455789999999998653 333  588999988876   2223345678999999           877766543 3  4


Q ss_pred             EEEEECCCCC---------CCcEEEeCCC
Q 036317           85 VYAWSARSGK---------EPPVIKWAPG  104 (106)
Q Consensus        85 i~~wd~~~~~---------~v~~i~~sp~  104 (106)
                      |+++|+.+++         ......|+|+
T Consensus       313 Iy~~d~~~g~~~~lt~~~~~~~~~~~SpD  341 (429)
T PRK03629        313 VYKVNINGGAPQRITWEGSQNQDADVSSD  341 (429)
T ss_pred             EEEEECCCCCeEEeecCCCCccCEEECCC
Confidence            5556777665         2345667774

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=98.38  E-value=3.8e-06  Score=67.22  Aligned_cols=71  Identities=13%  Similarity=0.120  Sum_probs=63.0

Q ss_pred             cCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce-----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCC
Q 036317            8 DGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL-----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGD   82 (106)
Q Consensus         8 ~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~-----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d   82 (106)
                      +.+|.+.|.++.++-||+++++.++|..+++|++++++.     -+|.+++..++|.|..             |+|+++|
T Consensus       171 l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n~-------------i~t~ged  237 (967)
T KOG0974|consen  171 LKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPNR-------------IITVGED  237 (967)
T ss_pred             ecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccce-------------eEEeccc
Confidence            568889999999999999999999999999999999887     3577888899998764             8999999


Q ss_pred             CcEEEEECC
Q 036317           83 GSVYAWSAR   91 (106)
Q Consensus        83 ~~i~~wd~~   91 (106)
                      .++++|+..
T Consensus       238 ctcrvW~~~  246 (967)
T KOG0974|consen  238 CTCRVWGVN  246 (967)
T ss_pred             eEEEEEecc
Confidence            999999544

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=98.38  E-value=1.2e-06  Score=63.20  Aligned_cols=71  Identities=17%  Similarity=0.333  Sum_probs=56.7

Q ss_pred             CCCCeEEEEeCCCeEEEEEcCCCceec------cCCC---cEEEEEecCCcceeeeeeecccEEEEecCCCcEEEEEC-C
Q 036317           22 NDGRLMLLTTLEGHIHVLHSFQGTLPV------SHNS---TLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSA-R   91 (106)
Q Consensus        22 pdg~~l~~~~~~~~i~l~d~~~~~~~~------~~~~---~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd~-~   91 (106)
                      |+-.++++++.+.-||+||+.+|+.+.      +...   ..++.|+|||           .+|.+| ...+|+++|+ +
T Consensus       121 P~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DG-----------eqlfaG-ykrcirvFdt~R  188 (406)
T KOG2919|consen  121 PSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDG-----------EQLFAG-YKRCIRVFDTSR  188 (406)
T ss_pred             CccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCC-----------CeEeec-ccceEEEeeccC
Confidence            778889999999999999999999821      2222   2358999999           998877 5669999999 5


Q ss_pred             CCC-----------------CCcEEEeCCC
Q 036317           92 SGK-----------------EPPVIKWAPG  104 (106)
Q Consensus        92 ~~~-----------------~v~~i~~sp~  104 (106)
                      .|.                 .+.|++|+|.
T Consensus       189 pGr~c~vy~t~~~~k~gq~giisc~a~sP~  218 (406)
T KOG2919|consen  189 PGRDCPVYTTVTKGKFGQKGIISCFAFSPM  218 (406)
T ss_pred             CCCCCcchhhhhcccccccceeeeeeccCC
Confidence            565                 6788899985

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=98.35  E-value=1.3e-06  Score=66.23  Aligned_cols=75  Identities=9%  Similarity=0.190  Sum_probs=64.4

Q ss_pred             eecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce------------eccCCCcEEEEEecCCcceeeeeeecc
Q 036317            6 FSDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL------------PVSHNSTLEASFSQHLSLVALSVLILR   73 (106)
Q Consensus         6 ~~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~------------~~~~~~~~~~~fs~d~~~~~~~~~~~~   73 (106)
                      |++..|..-|+.++|.|-.-.+++++.++.+++|+++....            ..|.+++.+++.++.+           
T Consensus       288 ~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~-----------  356 (577)
T KOG0642|consen  288 FTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNG-----------  356 (577)
T ss_pred             eeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCc-----------
Confidence            45566677899999999999899999999999999944322            4678899999999999           


Q ss_pred             cEEEEecCCCcEEEEECC
Q 036317           74 SWVLEGSGDGSVYAWSAR   91 (106)
Q Consensus        74 ~~i~t~s~d~~i~~wd~~   91 (106)
                      +++.+|+.||+|+.|++-
T Consensus       357 ~~~ysgg~Dg~I~~w~~p  374 (577)
T KOG0642|consen  357 EHCYSGGIDGTIRCWNLP  374 (577)
T ss_pred             eEEEeeccCceeeeeccC
Confidence            999999999999999665

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=98.34  E-value=1e-05  Score=59.31  Aligned_cols=70  Identities=19%  Similarity=0.111  Sum_probs=51.5

Q ss_pred             CeeEEEECCCCCeEEEEeCC---CeEEEEEcCCCce---eccCCCcEEEEEecCCcceeeeeeecccEEE-EecCC--Cc
Q 036317           14 DANEVKLSNDGRLMLLTTLE---GHIHVLHSFQGTL---PVSHNSTLEASFSQHLSLVALSVLILRSWVL-EGSGD--GS   84 (106)
Q Consensus        14 ~v~~v~~spdg~~l~~~~~~---~~i~l~d~~~~~~---~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~-t~s~d--~~   84 (106)
                      .+...+|||||++++.+..+   .++++||+.+++.   ....+....+.|+|||           +.|+ +.+.+  ..
T Consensus       191 ~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg-----------~~l~~~~~~~~~~~  259 (417)
T TIGR02800       191 PILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDG-----------SKLAVSLSKDGNPD  259 (417)
T ss_pred             ceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCC-----------CEEEEEECCCCCcc
Confidence            57788999999999877644   4899999988865   2233344568999999           6554 33443  36


Q ss_pred             EEEEECCCCC
Q 036317           85 VYAWSARSGK   94 (106)
Q Consensus        85 i~~wd~~~~~   94 (106)
                      |++||+.+++
T Consensus       260 i~~~d~~~~~  269 (417)
T TIGR02800       260 IYVMDLDGKQ  269 (417)
T ss_pred             EEEEECCCCC
Confidence            9999998776

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=98.33  E-value=7.2e-06  Score=62.01  Aligned_cols=82  Identities=22%  Similarity=0.384  Sum_probs=65.0

Q ss_pred             CCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCC-Cce-----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCc
Q 036317           11 DVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQ-GTL-----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGS   84 (106)
Q Consensus        11 ~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~-~~~-----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~   84 (106)
                      +..+++.|+|+|||.++|++++|+.|+||-+.. |+.     ..+-.+++.+.||+|+           +|+.+-+.|-.
T Consensus       446 d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds-----------~~~~~~S~d~e  514 (626)
T KOG2106|consen  446 DNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDS-----------QFLVSNSGDYE  514 (626)
T ss_pred             cCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCC-----------ceEEeccCceE
Confidence            345899999999999999999999999998654 444     2222567789999999           99999999999


Q ss_pred             EEEEECCCCC---CCcEEEeCC
Q 036317           85 VYAWSARSGK---EPPVIKWAP  103 (106)
Q Consensus        85 i~~wd~~~~~---~v~~i~~sp  103 (106)
                      |-.|.....+   .++.++|..
T Consensus       515 iLyW~~~~~~~~ts~kDvkW~t  536 (626)
T KOG2106|consen  515 ILYWKPSECKQITSVKDVKWAT  536 (626)
T ss_pred             EEEEccccCcccceecceeeee
Confidence            9999554444   566666643

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=98.33  E-value=8.4e-06  Score=58.15  Aligned_cols=86  Identities=9%  Similarity=0.076  Sum_probs=65.6

Q ss_pred             eecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce---eccCCCcEEEEEecCCcceeeeeeecccEEEEecCC
Q 036317            6 FSDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL---PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGD   82 (106)
Q Consensus         6 ~~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~---~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d   82 (106)
                      ..+..|...|.++.+++-...+++++.|++|++||......   ....+.+  -+.+-.+           ..|+.|..|
T Consensus        88 ~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkV--y~~~v~g-----------~~LvVg~~~  154 (323)
T KOG1036|consen   88 DQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKV--YCMDVSG-----------NRLVVGTSD  154 (323)
T ss_pred             eeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCceE--EEEeccC-----------CEEEEeecC
Confidence            45556667999999999888899999999999999876433   1122233  2334556           778888899


Q ss_pred             CcEEEEECCCCC------------CCcEEEeCCC
Q 036317           83 GSVYAWSARSGK------------EPPVIKWAPG  104 (106)
Q Consensus        83 ~~i~~wd~~~~~------------~v~~i~~sp~  104 (106)
                      ..+.+||+++..            .++|++.-|+
T Consensus       155 r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn  188 (323)
T KOG1036|consen  155 RKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPN  188 (323)
T ss_pred             ceEEEEEcccccchhhhccccceeEEEEEEEecC
Confidence            999999999875            7788888774

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=98.33  E-value=7.4e-06  Score=62.97  Aligned_cols=65  Identities=11%  Similarity=0.173  Sum_probs=54.2

Q ss_pred             eeecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce--e-ccCCCcEEEEEecCCcceeeee
Q 036317            5 IFSDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL--P-VSHNSTLEASFSQHLSLVALSV   69 (106)
Q Consensus         5 ~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~--~-~~~~~~~~~~fs~d~~~~~~~~   69 (106)
                      .+-..||.+.|+++..+|.|.++++|+.||+++||.+.+|+.  . .-.+.+.+++|+|.++.++++.
T Consensus       393 ~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAv  460 (733)
T KOG0650|consen  393 ALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAV  460 (733)
T ss_pred             eeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEE
Confidence            344578999999999999999999999999999999999988  2 2334567899999988777654

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=98.32  E-value=6.3e-06  Score=59.61  Aligned_cols=85  Identities=14%  Similarity=0.262  Sum_probs=60.1

Q ss_pred             CCCCCeeEEEECC--CCCeEEEEeCCCeEEEEEcCCCce------eccC-CCcEEEEEecCCcceeeeeeecccEEEEec
Q 036317           10 GDVSDANEVKLSN--DGRLMLLTTLEGHIHVLHSFQGTL------PVSH-NSTLEASFSQHLSLVALSVLILRSWVLEGS   80 (106)
Q Consensus        10 ~~~~~v~~v~~sp--dg~~l~~~~~~~~i~l~d~~~~~~------~~~~-~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s   80 (106)
                      ++...++.+.|..  .+..+.+++.||+|++||+++...      .++. .+.........+           +.+++|.
T Consensus        68 ~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~-----------~ii~~Gt  136 (376)
T KOG1188|consen   68 GPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKK-----------NIIACGT  136 (376)
T ss_pred             CCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcC-----------CeEEecc
Confidence            3455677888866  455678899999999999987544      1222 233334444466           6777774


Q ss_pred             C----CCcEEEEECCCCC------------CCcEEEeCCCC
Q 036317           81 G----DGSVYAWSARSGK------------EPPVIKWAPGS  105 (106)
Q Consensus        81 ~----d~~i~~wd~~~~~------------~v~~i~~sp~~  105 (106)
                      +    +-.+.+||++..+            .|.+++|+|+-
T Consensus       137 E~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~  177 (376)
T KOG1188|consen  137 ELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSD  177 (376)
T ss_pred             ccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCC
Confidence            4    6799999999765            89999999973

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.31  E-value=1.1e-05  Score=60.59  Aligned_cols=80  Identities=19%  Similarity=0.180  Sum_probs=55.9

Q ss_pred             CeeEEEECCCCCeEEEEeCC---CeEEEEEcCCCce---eccCCCcEEEEEecCCcceeeeeeecccEEEE-ecCCC--c
Q 036317           14 DANEVKLSNDGRLMLLTTLE---GHIHVLHSFQGTL---PVSHNSTLEASFSQHLSLVALSVLILRSWVLE-GSGDG--S   84 (106)
Q Consensus        14 ~v~~v~~spdg~~l~~~~~~---~~i~l~d~~~~~~---~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t-~s~d~--~   84 (106)
                      .+.+..|||||++++..+.+   ..++++|+.+++.   ....+......|+|||           +.|+. .+.++  .
T Consensus       219 ~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG-----------~~La~~~~~~g~~~  287 (448)
T PRK04792        219 PLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDG-----------KKLALVLSKDGQPE  287 (448)
T ss_pred             cccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCC-----------CEEEEEEeCCCCeE
Confidence            56789999999999876543   3688999988875   1122223358999999           76553 45555  5


Q ss_pred             EEEEECCCCC---------CCcEEEeCCC
Q 036317           85 VYAWSARSGK---------EPPVIKWAPG  104 (106)
Q Consensus        85 i~~wd~~~~~---------~v~~i~~sp~  104 (106)
                      |+++|+++++         ......|+|+
T Consensus       288 Iy~~dl~tg~~~~lt~~~~~~~~p~wSpD  316 (448)
T PRK04792        288 IYVVDIATKALTRITRHRAIDTEPSWHPD  316 (448)
T ss_pred             EEEEECCCCCeEECccCCCCccceEECCC
Confidence            8888998876         3455677775

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=98.31  E-value=5.7e-06  Score=63.33  Aligned_cols=81  Identities=19%  Similarity=0.252  Sum_probs=67.6

Q ss_pred             CCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----------e---c--cCCCcEEEEEecCCcceeeeeeecccEE
Q 036317           12 VSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----------P---V--SHNSTLEASFSQHLSLVALSVLILRSWV   76 (106)
Q Consensus        12 ~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----------~---~--~~~~~~~~~fs~d~~~~~~~~~~~~~~i   76 (106)
                      .+.++.+..++-...+++++.+|.+.+||..+...          .   .  ....++++.|+-||           -.+
T Consensus       175 ~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~g-----------L~~  243 (703)
T KOG2321|consen  175 SGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDG-----------LHV  243 (703)
T ss_pred             cccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCc-----------eeE
Confidence            46899999999988899999999999999876543          1   1  12347889999999           999


Q ss_pred             EEecCCCcEEEEECCCCC-----------CCcEEEeCC
Q 036317           77 LEGSGDGSVYAWSARSGK-----------EPPVIKWAP  103 (106)
Q Consensus        77 ~t~s~d~~i~~wd~~~~~-----------~v~~i~~sp  103 (106)
                      +.|..+|.++++|+++.+           +|..+.|.+
T Consensus       244 aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~  281 (703)
T KOG2321|consen  244 AVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQD  281 (703)
T ss_pred             EeeccCCcEEEEEcccCCceeecccCCccceeeecccc
Confidence            999999999999999877           777888754

>PRK05137 tolB translocation protein TolB; Provisional

Probab=98.30  E-value=1e-05  Score=60.31  Aligned_cols=82  Identities=21%  Similarity=0.258  Sum_probs=55.5

Q ss_pred             CCCeeEEEECCCCCeEEEE-eCCC--eEEEEEcCCCce---eccCCCcEEEEEecCCcceeeeeeecccEEEEecC-C--
Q 036317           12 VSDANEVKLSNDGRLMLLT-TLEG--HIHVLHSFQGTL---PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSG-D--   82 (106)
Q Consensus        12 ~~~v~~v~~spdg~~l~~~-~~~~--~i~l~d~~~~~~---~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~-d--   82 (106)
                      .+.+...+|||||+.++.+ ..++  .|+++|..+++.   ..+........|+|||           ++|+..+. +  
T Consensus       245 ~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG-----------~~i~f~s~~~g~  313 (435)
T PRK05137        245 PGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDG-----------SQIVFESDRSGS  313 (435)
T ss_pred             CCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCC-----------CEEEEEECCCCC
Confidence            3456788999999988654 4444  577789888776   2222334568999999           77766553 3  


Q ss_pred             CcEEEEECCCCC---------CCcEEEeCCC
Q 036317           83 GSVYAWSARSGK---------EPPVIKWAPG  104 (106)
Q Consensus        83 ~~i~~wd~~~~~---------~v~~i~~sp~  104 (106)
                      ..|+++|+.+++         ......|+|+
T Consensus       314 ~~Iy~~d~~g~~~~~lt~~~~~~~~~~~Spd  344 (435)
T PRK05137        314 PQLYVMNADGSNPRRISFGGGRYSTPVWSPR  344 (435)
T ss_pred             CeEEEEECCCCCeEEeecCCCcccCeEECCC
Confidence            368888987764         2344667775

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=98.30  E-value=2.5e-06  Score=63.82  Aligned_cols=82  Identities=18%  Similarity=0.200  Sum_probs=58.0

Q ss_pred             CCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce-ec-c-CCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEE
Q 036317           10 GDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL-PV-S-HNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVY   86 (106)
Q Consensus        10 ~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~-~~-~-~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~   86 (106)
                      -|.++|++++++++|+|+++++.|..++|||+..-.. .. + ......++||..|             ++..+....|.
T Consensus       291 cH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~Sqkg-------------lLA~~~G~~v~  357 (545)
T KOG1272|consen  291 CHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKG-------------LLALSYGDHVQ  357 (545)
T ss_pred             hcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCCCcccccccccc-------------ceeeecCCeee
Confidence            4678999999999999999999999999999976554 11 1 1233457888777             34444555788


Q ss_pred             EEE-CCCCC--------------CCcEEEeCCC
Q 036317           87 AWS-ARSGK--------------EPPVIKWAPG  104 (106)
Q Consensus        87 ~wd-~~~~~--------------~v~~i~~sp~  104 (106)
                      +|. .-.+.              +|..+.|.|-
T Consensus       358 iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~  390 (545)
T KOG1272|consen  358 IWKDALKGSGHGETPYMNHRCGGPVEDLRFCPY  390 (545)
T ss_pred             eehhhhcCCCCCCcchhhhccCcccccceeccH
Confidence            883 22211              7777777763

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.30  E-value=5.9e-06  Score=63.85  Aligned_cols=79  Identities=20%  Similarity=0.292  Sum_probs=66.9

Q ss_pred             eeecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEec
Q 036317            5 IFSDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGS   80 (106)
Q Consensus         5 ~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s   80 (106)
                      +.++.||+..|+.+-.++||+.+++++.|++|++||+...+.    ..|...+.+..-+|+=           .++.+|+
T Consensus       206 imkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf-----------~~vYsG~  274 (735)
T KOG0308|consen  206 IMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSF-----------THVYSGG  274 (735)
T ss_pred             eeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCc-----------ceEEecC
Confidence            456789999999999999999999999999999999866554    4455566666667777           9999999


Q ss_pred             CCCcEEEEECCCCC
Q 036317           81 GDGSVYAWSARSGK   94 (106)
Q Consensus        81 ~d~~i~~wd~~~~~   94 (106)
                      .||.|+.=|+.+.+
T Consensus       275 rd~~i~~Tdl~n~~  288 (735)
T KOG0308|consen  275 RDGNIYRTDLRNPA  288 (735)
T ss_pred             CCCcEEecccCCch
Confidence            99999999998843

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=98.29  E-value=4.3e-06  Score=65.59  Aligned_cols=73  Identities=15%  Similarity=0.253  Sum_probs=65.1

Q ss_pred             CCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEE
Q 036317           11 DVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVY   86 (106)
Q Consensus        11 ~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~   86 (106)
                      |.+..-.+..+|.|.|+++++.|+++.++|..+|+.    .+|...++.+.|.+|=           +.|++.+.||.|.
T Consensus       640 ~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDC-----------kHlISvsgDgCIF  708 (1080)
T KOG1408|consen  640 HEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDC-----------KHLISVSGDGCIF  708 (1080)
T ss_pred             CCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccc-----------hhheeecCCceEE
Confidence            346788899999999999999999999999999987    5677778899999999           9999999999999


Q ss_pred             EEECCCCC
Q 036317           87 AWSARSGK   94 (106)
Q Consensus        87 ~wd~~~~~   94 (106)
                      +|.+...+
T Consensus       709 vW~lp~~m  716 (1080)
T KOG1408|consen  709 VWKLPLTM  716 (1080)
T ss_pred             EEECchhH
Confidence            99987543

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=98.27  E-value=5.1e-06  Score=64.44  Aligned_cols=73  Identities=14%  Similarity=0.183  Sum_probs=50.8

Q ss_pred             CCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce---eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcE
Q 036317            9 GGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL---PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSV   85 (106)
Q Consensus         9 ~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~---~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i   85 (106)
                      .+|.+-|+.+++=|++. ++++++|+.|++|+.....+   .++.+.+.+++..+++           ..|+++++|+++
T Consensus       176 ~gHtD~VRgL~vl~~~~-flScsNDg~Ir~w~~~ge~l~~~~ghtn~vYsis~~~~~-----------~~Ivs~gEDrtl  243 (745)
T KOG0301|consen  176 SGHTDCVRGLAVLDDSH-FLSCSNDGSIRLWDLDGEVLLEMHGHTNFVYSISMALSD-----------GLIVSTGEDRTL  243 (745)
T ss_pred             ccchhheeeeEEecCCC-eEeecCCceEEEEeccCceeeeeeccceEEEEEEecCCC-----------CeEEEecCCceE
Confidence            45556677777777765 66777777777777733333   3445555566655666           899999999999


Q ss_pred             EEEECCCC
Q 036317           86 YAWSARSG   93 (106)
Q Consensus        86 ~~wd~~~~   93 (106)
                      ++|+....
T Consensus       244 riW~~~e~  251 (745)
T KOG0301|consen  244 RIWKKDEC  251 (745)
T ss_pred             EEeecCce
Confidence            99998743

>PRK01029 tolB translocation protein TolB; Provisional

Probab=98.25  E-value=2.2e-05  Score=58.77  Aligned_cols=81  Identities=17%  Similarity=0.202  Sum_probs=58.7

Q ss_pred             CeeEEEECCCCCeEEEEeCC---CeEEEEEcCCCcee---ccCCCcEEEEEecCCcceeeeeeecccEEEEecC---CCc
Q 036317           14 DANEVKLSNDGRLMLLTTLE---GHIHVLHSFQGTLP---VSHNSTLEASFSQHLSLVALSVLILRSWVLEGSG---DGS   84 (106)
Q Consensus        14 ~v~~v~~spdg~~l~~~~~~---~~i~l~d~~~~~~~---~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~---d~~   84 (106)
                      .+....|||||++++....+   ..+.+||..+++..   ..........|+|||           ++|+....   ...
T Consensus       328 ~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG-----------~~L~f~~~~~g~~~  396 (428)
T PRK01029        328 NSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDS-----------LHLVYSAGNSNESE  396 (428)
T ss_pred             CccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCC-----------CEEEEEECCCCCce
Confidence            56788999999999877654   47899999988772   122234568999999           76654322   357


Q ss_pred             EEEEECCCCC---------CCcEEEeCCCC
Q 036317           85 VYAWSARSGK---------EPPVIKWAPGS  105 (106)
Q Consensus        85 i~~wd~~~~~---------~v~~i~~sp~~  105 (106)
                      ++++|+.+++         .+...+|+|.+
T Consensus       397 L~~vdl~~g~~~~Lt~~~g~~~~p~Ws~~~  426 (428)
T PRK01029        397 LYLISLITKKTRKIVIGSGEKRFPSWGAFP  426 (428)
T ss_pred             EEEEECCCCCEEEeecCCCcccCceecCCC
Confidence            9999998876         45677888865

>PRK02889 tolB translocation protein TolB; Provisional

Probab=98.22  E-value=2.3e-05  Score=58.42  Aligned_cols=80  Identities=19%  Similarity=0.199  Sum_probs=52.3

Q ss_pred             CeeEEEECCCCCeEEEEeCC-CeEEEE--EcCCCce---eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCC---c
Q 036317           14 DANEVKLSNDGRLMLLTTLE-GHIHVL--HSFQGTL---PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDG---S   84 (106)
Q Consensus        14 ~v~~v~~spdg~~l~~~~~~-~~i~l~--d~~~~~~---~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~---~   84 (106)
                      ......|+|||++++.++.. +...+|  +..+++.   ...........|||||           ++|+..+.++   .
T Consensus       285 ~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG-----------~~Ia~~s~~~g~~~  353 (427)
T PRK02889        285 IDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDG-----------KLLAYISRVGGAFK  353 (427)
T ss_pred             CCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCC-----------CEEEEEEccCCcEE
Confidence            35678899999998876643 444444  5555554   1122223457899999           7777655443   6


Q ss_pred             EEEEECCCCC--------CCcEEEeCCC
Q 036317           85 VYAWSARSGK--------EPPVIKWAPG  104 (106)
Q Consensus        85 i~~wd~~~~~--------~v~~i~~sp~  104 (106)
                      |++||+.+++        ......|+|+
T Consensus       354 I~v~d~~~g~~~~lt~~~~~~~p~~spd  381 (427)
T PRK02889        354 LYVQDLATGQVTALTDTTRDESPSFAPN  381 (427)
T ss_pred             EEEEECCCCCeEEccCCCCccCceECCC
Confidence            9999998876        2345567775

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=98.22  E-value=9.3e-06  Score=58.39  Aligned_cols=86  Identities=12%  Similarity=0.108  Sum_probs=70.7

Q ss_pred             CCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCC-Cce------eccCCCcEEEEEecCCcceeeeeeecccEEEEecC
Q 036317            9 GGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQ-GTL------PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSG   81 (106)
Q Consensus         9 ~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~-~~~------~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~   81 (106)
                      ..|+..|+.++|+|..+.++++++|..-++|...+ ++-      .......+.+.|+|.+           ..++.||.
T Consensus        52 s~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~e-----------nkFAVgSg  120 (361)
T KOG1523|consen   52 SEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKE-----------NKFAVGSG  120 (361)
T ss_pred             hhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcC-----------ceEEeccC
Confidence            44556899999999999999999999999999844 432      3344456779999999           99999999


Q ss_pred             CCcEEEEECCCCC--------------CCcEEEeCCCC
Q 036317           82 DGSVYAWSARSGK--------------EPPVIKWAPGS  105 (106)
Q Consensus        82 d~~i~~wd~~~~~--------------~v~~i~~sp~~  105 (106)
                      ...|.+|=++..+              .|.+++|+|+-
T Consensus       121 ar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnn  158 (361)
T KOG1523|consen  121 ARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNN  158 (361)
T ss_pred             ccEEEEEEEecccceehhhhhCCccccceeeeeccCCc
Confidence            9999999877554              67899999974

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=98.21  E-value=3.1e-05  Score=55.39  Aligned_cols=80  Identities=5%  Similarity=0.069  Sum_probs=56.9

Q ss_pred             CeeEEEECCCCCeEEEEeC-CCeEEEEEcCC--Cce------e---c---cCCCcEEEEEecCCcceeeeeeecccEEEE
Q 036317           14 DANEVKLSNDGRLMLLTTL-EGHIHVLHSFQ--GTL------P---V---SHNSTLEASFSQHLSLVALSVLILRSWVLE   78 (106)
Q Consensus        14 ~v~~v~~spdg~~l~~~~~-~~~i~l~d~~~--~~~------~---~---~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t   78 (106)
                      ..+.+.|+|||++++++.. ++++.+||...  ++.      .   .   .......+.|+||+           +++++
T Consensus       176 ~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg-----------~~lyv  244 (330)
T PRK11028        176 GPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDG-----------RHLYA  244 (330)
T ss_pred             CCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCC-----------CEEEE
Confidence            4578999999999988775 89999999863  333      0   1   01122358899999           98888


Q ss_pred             ecC-CCcEEEEECCCCC-------------CCcEEEeCCC
Q 036317           79 GSG-DGSVYAWSARSGK-------------EPPVIKWAPG  104 (106)
Q Consensus        79 ~s~-d~~i~~wd~~~~~-------------~v~~i~~sp~  104 (106)
                      +.+ +++|.+|+++...             .++.+.++|+
T Consensus       245 ~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~d  284 (330)
T PRK11028        245 CDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHS  284 (330)
T ss_pred             ecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCC
Confidence            865 6799999985422             3456677664

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.18  E-value=3.3e-05  Score=55.44  Aligned_cols=74  Identities=12%  Similarity=0.131  Sum_probs=57.8

Q ss_pred             CCCCCeeEEEECCC--CCeEEEEeCCCeEEEEEcCCCce-------------eccCCCcEEEEEecC--Ccceeeeeeec
Q 036317           10 GDVSDANEVKLSND--GRLMLLTTLEGHIHVLHSFQGTL-------------PVSHNSTLEASFSQH--LSLVALSVLIL   72 (106)
Q Consensus        10 ~~~~~v~~v~~spd--g~~l~~~~~~~~i~l~d~~~~~~-------------~~~~~~~~~~~fs~d--~~~~~~~~~~~   72 (106)
                      .|.+.|..+.|.+-  |+.+++.+.|+++.||.-.....             ......++++.|.|.  |          
T Consensus        57 ah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlG----------  126 (361)
T KOG2445|consen   57 AHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLG----------  126 (361)
T ss_pred             ecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcc----------
Confidence            44678999999643  99999999999999998632211             234567888999977  5          


Q ss_pred             ccEEEEecCCCcEEEEECCCCC
Q 036317           73 RSWVLEGSGDGSVYAWSARSGK   94 (106)
Q Consensus        73 ~~~i~t~s~d~~i~~wd~~~~~   94 (106)
                       -.+++++.||.++||+.-+..
T Consensus       127 -LklA~~~aDG~lRIYEA~dp~  147 (361)
T KOG2445|consen  127 -LKLAAASADGILRIYEAPDPM  147 (361)
T ss_pred             -eEEEEeccCcEEEEEecCCcc
Confidence             689999999999999887643

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=98.17  E-value=6.5e-05  Score=53.71  Aligned_cols=81  Identities=15%  Similarity=0.099  Sum_probs=58.0

Q ss_pred             CCeeEEEECCCCCeEEEEe-CCCeEEEEEcC-CCce---e--ccCCCcEEEEEecCCcceeeeeeecccEEEEecC-CCc
Q 036317           13 SDANEVKLSNDGRLMLLTT-LEGHIHVLHSF-QGTL---P--VSHNSTLEASFSQHLSLVALSVLILRSWVLEGSG-DGS   84 (106)
Q Consensus        13 ~~v~~v~~spdg~~l~~~~-~~~~i~l~d~~-~~~~---~--~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~-d~~   84 (106)
                      +....++++|||+++++++ .++.+.+|+.. ++++   .  ...+.+..++|+|++           +++++++. ++.
T Consensus        35 ~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~g-----------~~l~v~~~~~~~  103 (330)
T PRK11028         35 GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHISTDHQG-----------RFLFSASYNANC  103 (330)
T ss_pred             CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEEEECCCC-----------CEEEEEEcCCCe
Confidence            3567889999999987765 57889999886 4544   1  122345679999999           88877764 789


Q ss_pred             EEEEECCC-CC------------CCcEEEeCCC
Q 036317           85 VYAWSARS-GK------------EPPVIKWAPG  104 (106)
Q Consensus        85 i~~wd~~~-~~------------~v~~i~~sp~  104 (106)
                      |.+|++++ +.            .+.++.++|+
T Consensus       104 v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~  136 (330)
T PRK11028        104 VSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPD  136 (330)
T ss_pred             EEEEEECCCCCCCCceeeccCCCcccEeEeCCC
Confidence            99999963 32            3456667765

>PRK01742 tolB translocation protein TolB; Provisional

Probab=98.17  E-value=1.3e-05  Score=59.65  Aligned_cols=77  Identities=16%  Similarity=0.188  Sum_probs=55.7

Q ss_pred             eEEEECCCCCeEEEEeCCCeEEEEEcCCCcee--ccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEEECC--
Q 036317           16 NEVKLSNDGRLMLLTTLEGHIHVLHSFQGTLP--VSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSAR--   91 (106)
Q Consensus        16 ~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~~--~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd~~--   91 (106)
                      ....|+|||++++.++.++ +.+||..+++..  ........++|+|||           ++|+.++.++.+.+|++.  
T Consensus       336 ~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~~~~~~~~sPdG-----------~~i~~~s~~g~~~~l~~~~~  403 (429)
T PRK01742        336 YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTFLDESPSISPNG-----------IMIIYSSTQGLGKVLQLVSA  403 (429)
T ss_pred             CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCCCCCCceECCCC-----------CEEEEEEcCCCceEEEEEEC
Confidence            3577999999998887755 566899888751  111122457899999           999999888888888753  


Q ss_pred             CCC----------CCcEEEeCCC
Q 036317           92 SGK----------EPPVIKWAPG  104 (106)
Q Consensus        92 ~~~----------~v~~i~~sp~  104 (106)
                      +|+          .+...+|+|.
T Consensus       404 ~G~~~~~l~~~~g~~~~p~wsp~  426 (429)
T PRK01742        404 DGRFKARLPGSDGQVKFPAWSPY  426 (429)
T ss_pred             CCCceEEccCCCCCCCCcccCCC
Confidence            344          4566778875

>PRK04922 tolB translocation protein TolB; Provisional

Probab=98.16  E-value=3.9e-05  Score=57.18  Aligned_cols=80  Identities=19%  Similarity=0.170  Sum_probs=53.6

Q ss_pred             CeeEEEECCCCCeEEEEeCC-C--eEEEEEcCCCce---eccCCCcEEEEEecCCcceeeeeeecccEEEEecCC---Cc
Q 036317           14 DANEVKLSNDGRLMLLTTLE-G--HIHVLHSFQGTL---PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGD---GS   84 (106)
Q Consensus        14 ~v~~v~~spdg~~l~~~~~~-~--~i~l~d~~~~~~---~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d---~~   84 (106)
                      .....+|+|||++++.++.. +  .++++|..+++.   ...........|||||           ++|+..+.+   ..
T Consensus       293 ~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG-----------~~Ia~~~~~~~~~~  361 (433)
T PRK04922        293 IDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDG-----------KKIAMVHGSGGQYR  361 (433)
T ss_pred             CccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCC-----------CEEEEEECCCCcee
Confidence            34578999999999877643 3  477778777665   1122233458999999           777655433   26


Q ss_pred             EEEEECCCCC--------CCcEEEeCCC
Q 036317           85 VYAWSARSGK--------EPPVIKWAPG  104 (106)
Q Consensus        85 i~~wd~~~~~--------~v~~i~~sp~  104 (106)
                      |++||+.+++        ......|+|+
T Consensus       362 I~v~d~~~g~~~~Lt~~~~~~~p~~spd  389 (433)
T PRK04922        362 IAVMDLSTGSVRTLTPGSLDESPSFAPN  389 (433)
T ss_pred             EEEEECCCCCeEECCCCCCCCCceECCC
Confidence            9999998876        2234566665

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=98.12  E-value=2.7e-05  Score=60.17  Aligned_cols=80  Identities=18%  Similarity=0.335  Sum_probs=64.7

Q ss_pred             CeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce------ecc--CCCcEEEEEecCCcceeeeeeecccEEEEecCCCcE
Q 036317           14 DANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL------PVS--HNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSV   85 (106)
Q Consensus        14 ~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~------~~~--~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i   85 (106)
                      .+.++..+..|.++.+.+.|+.|++||..+-..      .+.  ......-..+||+           .++++|+.|..+
T Consensus       273 G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~-----------~~l~SgSsd~~a  341 (720)
T KOG0321|consen  273 GQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDD-----------CSLLSGSSDEQA  341 (720)
T ss_pred             eeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCC-----------ceEeccCCCcce
Confidence            677888889999999999999999999876554      111  1112345789999           999999999999


Q ss_pred             EEEECCCCC-----------CCcEEEeCCC
Q 036317           86 YAWSARSGK-----------EPPVIKWAPG  104 (106)
Q Consensus        86 ~~wd~~~~~-----------~v~~i~~sp~  104 (106)
                      ++|.+.+.+           .|.+++|.|.
T Consensus       342 yiw~vs~~e~~~~~l~Ght~eVt~V~w~pS  371 (720)
T KOG0321|consen  342 YIWVVSSPEAPPALLLGHTREVTTVRWLPS  371 (720)
T ss_pred             eeeeecCccCChhhhhCcceEEEEEeeccc
Confidence            999999877           7888888774

>KOG4328 consensus WD40 protein [Function unknown]

Probab=98.12  E-value=9.7e-06  Score=60.47  Aligned_cols=84  Identities=12%  Similarity=0.146  Sum_probs=68.1

Q ss_pred             CCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce-----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEE
Q 036317           12 VSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL-----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVY   86 (106)
Q Consensus        12 ~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~-----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~   86 (106)
                      ...+.+++|+.+..-++.+.+=|.+.+||..++.-     ..+...+..+++.|..          +.+++|+|-|++++
T Consensus       279 ~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~----------p~~laT~s~D~T~k  348 (498)
T KOG4328|consen  279 NIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVC----------PWFLATASLDQTAK  348 (498)
T ss_pred             ceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCC----------chheeecccCccee
Confidence            34678889988888788888778999999887654     3455678889999987          57899999999999


Q ss_pred             EEECCCCC--------------CCcEEEeCCCC
Q 036317           87 AWSARSGK--------------EPPVIKWAPGS  105 (106)
Q Consensus        87 ~wd~~~~~--------------~v~~i~~sp~~  105 (106)
                      |||++.-.              .|.+.-|||.-
T Consensus       349 IWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~  381 (498)
T KOG4328|consen  349 IWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSG  381 (498)
T ss_pred             eeehhhhcCCCCcceecccccceeeeeEEcCCC
Confidence            99998643              67888888863

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=98.11  E-value=3.5e-06  Score=61.92  Aligned_cols=75  Identities=15%  Similarity=0.232  Sum_probs=59.8

Q ss_pred             CCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCc
Q 036317            9 GGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGS   84 (106)
Q Consensus         9 ~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~   84 (106)
                      .+|..+|..++|+||++++++++.|+.+.+||+..|.+    ..+...+..++|.|-+           ++|++-+.|..
T Consensus       120 r~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~-----------qyv~s~s~dr~  188 (434)
T KOG1009|consen  120 RGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLN-----------QYVASKSSDRH  188 (434)
T ss_pred             cccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhh-----------hhhhhhccCcc
Confidence            56778999999999999999999999999999999988    3455677789999999           66666666665


Q ss_pred             EEEEECCCCC
Q 036317           85 VYAWSARSGK   94 (106)
Q Consensus        85 i~~wd~~~~~   94 (106)
                      .+...+..-+
T Consensus       189 ~~~~~~~~~~  198 (434)
T KOG1009|consen  189 PEGFSAKLKQ  198 (434)
T ss_pred             cceeeeeeee
Confidence            5555554433

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=98.11  E-value=2.8e-05  Score=59.14  Aligned_cols=68  Identities=18%  Similarity=0.284  Sum_probs=53.7

Q ss_pred             CCeeEEEECCCCCeEEEEeCC---CeEEEEEcCCCcee--ccCCCcEEEEEecCCcceeeeeeecccEEEEecC------
Q 036317           13 SDANEVKLSNDGRLMLLTTLE---GHIHVLHSFQGTLP--VSHNSTLEASFSQHLSLVALSVLILRSWVLEGSG------   81 (106)
Q Consensus        13 ~~v~~v~~spdg~~l~~~~~~---~~i~l~d~~~~~~~--~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~------   81 (106)
                      ++=+.+-|+|.|++++.++.+   |.|.+||+.+.+..  ......+-+.|+|||           ++++|+.-      
T Consensus       312 gpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~tt~~eW~PdG-----------e~flTATTaPRlrv  380 (566)
T KOG2315|consen  312 GPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANTTVFEWSPDG-----------EYFLTATTAPRLRV  380 (566)
T ss_pred             CCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCCceEEEEcCCC-----------cEEEEEeccccEEe
Confidence            466789999999999999866   88999999987662  222233459999999           88887743      


Q ss_pred             CCcEEEEECC
Q 036317           82 DGSVYAWSAR   91 (106)
Q Consensus        82 d~~i~~wd~~   91 (106)
                      |..++||+..
T Consensus       381 dNg~Kiwhyt  390 (566)
T KOG2315|consen  381 DNGIKIWHYT  390 (566)
T ss_pred             cCCeEEEEec
Confidence            7889999985

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=98.09  E-value=1.4e-05  Score=57.05  Aligned_cols=71  Identities=14%  Similarity=0.227  Sum_probs=57.0

Q ss_pred             CCCeeEEEECCCCCeEE-EEeCCCeEEEEEcCCCce-----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcE
Q 036317           12 VSDANEVKLSNDGRLML-LTTLEGHIHVLHSFQGTL-----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSV   85 (106)
Q Consensus        12 ~~~v~~v~~spdg~~l~-~~~~~~~i~l~d~~~~~~-----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i   85 (106)
                      ...|+++.|+|+.++++ +++.|+.+++||...-+.     +.|...+.++.|.|-.          ++.|++|+.|..|
T Consensus       214 gq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~h----------dqLiLs~~SDs~V  283 (370)
T KOG1007|consen  214 GQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEH----------DQLILSGGSDSAV  283 (370)
T ss_pred             cceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCcc----------ceEEEecCCCcee
Confidence            34799999999988765 567889999999876554     4566678899999875          3678999999999


Q ss_pred             EEEECCC
Q 036317           86 YAWSARS   92 (106)
Q Consensus        86 ~~wd~~~   92 (106)
                      .+|-+.+
T Consensus       284 ~Lsca~s  290 (370)
T KOG1007|consen  284 NLSCASS  290 (370)
T ss_pred             EEEeccc
Confidence            9996653

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=98.06  E-value=2.5e-05  Score=61.75  Aligned_cols=73  Identities=18%  Similarity=0.138  Sum_probs=63.1

Q ss_pred             CCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce---eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEE
Q 036317           11 DVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL---PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYA   87 (106)
Q Consensus        11 ~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~---~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~   87 (106)
                      |..+|+++.|++||.++++|+.++-+-+|...+++.   |.-.+++..+.+|||+           ...+...+|.+|.+
T Consensus       250 H~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds-----------~~~sl~~~DNqI~l  318 (792)
T KOG1963|consen  250 HHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQFLPRLGSPILHIVVSPDS-----------DLYSLVLEDNQIHL  318 (792)
T ss_pred             cccccceeEEecCCceEeecccceEEEEEeecCCCcccccccCCeeEEEEEcCCC-----------CeEEEEecCceEEE
Confidence            356999999999999999999999999999998775   5566677899999999           88888888999999


Q ss_pred             EECCCCC
Q 036317           88 WSARSGK   94 (106)
Q Consensus        88 wd~~~~~   94 (106)
                      -.+.+.+
T Consensus       319 i~~~dl~  325 (792)
T KOG1963|consen  319 IKASDLE  325 (792)
T ss_pred             Eeccchh
Confidence            8876544

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.05  E-value=4.8e-05  Score=57.99  Aligned_cols=82  Identities=6%  Similarity=0.009  Sum_probs=69.1

Q ss_pred             CCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCc
Q 036317            9 GGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGS   84 (106)
Q Consensus         9 ~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~   84 (106)
                      ..|.+.|+.+.++.+-.++.+++.|..+..|+..+.+.    ......+.+.+.+||+           +.+++++  ++
T Consensus        99 ~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~-----------~~l~~as--~~  165 (541)
T KOG4547|consen   99 DKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDG-----------KILLTAS--RQ  165 (541)
T ss_pred             CCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCC-----------CEEEecc--ce
Confidence            45667999999999999999999999999999988877    3344455678999999           9998886  67


Q ss_pred             EEEEECCCCC----------CCcEEEeCC
Q 036317           85 VYAWSARSGK----------EPPVIKWAP  103 (106)
Q Consensus        85 i~~wd~~~~~----------~v~~i~~sp  103 (106)
                      |++||+++++          +|+++.|..
T Consensus       166 ik~~~~~~kevv~~ftgh~s~v~t~~f~~  194 (541)
T KOG4547|consen  166 IKVLDIETKEVVITFTGHGSPVRTLSFTT  194 (541)
T ss_pred             EEEEEccCceEEEEecCCCcceEEEEEEE
Confidence            9999999998          888888743

>PRK00178 tolB translocation protein TolB; Provisional

Probab=98.01  E-value=0.00013  Score=54.02  Aligned_cols=70  Identities=16%  Similarity=0.142  Sum_probs=48.2

Q ss_pred             CeeEEEECCCCCeEEEEe-CCC--eEEEEEcCCCce---eccCCCcEEEEEecCCcceeeeeeecccEEEEecC-C--Cc
Q 036317           14 DANEVKLSNDGRLMLLTT-LEG--HIHVLHSFQGTL---PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSG-D--GS   84 (106)
Q Consensus        14 ~v~~v~~spdg~~l~~~~-~~~--~i~l~d~~~~~~---~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~-d--~~   84 (106)
                      .+....|||||++++... .++  .++++|..+++.   ...........|+|||           +.|+..+. +  ..
T Consensus       244 ~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg-----------~~i~f~s~~~g~~~  312 (430)
T PRK00178        244 LNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDG-----------RTLYFTSDRGGKPQ  312 (430)
T ss_pred             CcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEEcccCCCCcCCeEECCCC-----------CEEEEEECCCCCce
Confidence            455789999999887543 333  688889988876   2222234468999999           76655443 3  36


Q ss_pred             EEEEECCCCC
Q 036317           85 VYAWSARSGK   94 (106)
Q Consensus        85 i~~wd~~~~~   94 (106)
                      |+++|+.+++
T Consensus       313 iy~~d~~~g~  322 (430)
T PRK00178        313 IYKVNVNGGR  322 (430)
T ss_pred             EEEEECCCCC
Confidence            8888887776

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=98.01  E-value=0.00014  Score=50.50  Aligned_cols=83  Identities=27%  Similarity=0.434  Sum_probs=61.6

Q ss_pred             CCCCCCeeEEEECCCCCeE-EEEeCCCeEEEEEcCCCce-e----ccCCCcEEEEEecCCcceeeeeeecccEEEEecCC
Q 036317            9 GGDVSDANEVKLSNDGRLM-LLTTLEGHIHVLHSFQGTL-P----VSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGD   82 (106)
Q Consensus         9 ~~~~~~v~~v~~spdg~~l-~~~~~~~~i~l~d~~~~~~-~----~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d   82 (106)
                      .++...|..++|+|++..+ +.++.++.+++||...+.. .    .+.... -..|+|++           .++++++.|
T Consensus       195 ~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~-----------~~~~~~~~d  262 (466)
T COG2319         195 AGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDG-----------SLLASGSSD  262 (466)
T ss_pred             ccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCC-----------CEEEEecCC
Confidence            3466799999999999844 4448999999998776655 2    122222 22799999           899999999


Q ss_pred             CcEEEEECCCCC-----------CCcEEEeCC
Q 036317           83 GSVYAWSARSGK-----------EPPVIKWAP  103 (106)
Q Consensus        83 ~~i~~wd~~~~~-----------~v~~i~~sp  103 (106)
                      +.+++|++....           .+.++.|+|
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  294 (466)
T COG2319         263 GTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSP  294 (466)
T ss_pred             CcEEEeeecCCCcEEEEEecCCccEEEEEECC
Confidence            999999998544           555566666

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=98.00  E-value=1.1e-05  Score=62.16  Aligned_cols=48  Identities=27%  Similarity=0.497  Sum_probs=42.5

Q ss_pred             eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEEECCCCC---------CCcEEEeCCCC
Q 036317           47 PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSARSGK---------EPPVIKWAPGS  105 (106)
Q Consensus        47 ~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd~~~~~---------~v~~i~~sp~~  105 (106)
                      .+|.+.+.+++-.|.|           .+|++|+.||+++||.+.+|.         .|+||+|+|..
T Consensus       397 rGHtg~Vr~iSvdp~G-----------~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~  453 (733)
T KOG0650|consen  397 RGHTGLVRSISVDPSG-----------EWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLS  453 (733)
T ss_pred             eccCCeEEEEEecCCc-----------ceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCC
Confidence            3566777778888999           999999999999999999998         89999999964

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=97.99  E-value=0.00014  Score=53.29  Aligned_cols=69  Identities=16%  Similarity=0.183  Sum_probs=50.4

Q ss_pred             eeEEEECCCCCeEEEEeCC---CeEEEEEcCCCce---eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCC---cE
Q 036317           15 ANEVKLSNDGRLMLLTTLE---GHIHVLHSFQGTL---PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDG---SV   85 (106)
Q Consensus        15 v~~v~~spdg~~l~~~~~~---~~i~l~d~~~~~~---~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~---~i   85 (106)
                      .....|+|||++++..+..   ..++++|..+++.   ...........|+|||           ++|+..+.++   .|
T Consensus       280 ~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg-----------~~i~~~~~~~~~~~i  348 (417)
T TIGR02800       280 DTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDG-----------DLIAFVHREGGGFNI  348 (417)
T ss_pred             CCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCeEECCCC-----------CEEEEEEccCCceEE
Confidence            4467899999998877643   2688888877765   2223344568999999           8877776665   78


Q ss_pred             EEEECCCCC
Q 036317           86 YAWSARSGK   94 (106)
Q Consensus        86 ~~wd~~~~~   94 (106)
                      .+||+.++.
T Consensus       349 ~~~d~~~~~  357 (417)
T TIGR02800       349 AVMDLDGGG  357 (417)
T ss_pred             EEEeCCCCC
Confidence            999988765

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=97.98  E-value=1.7e-05  Score=60.54  Aligned_cols=69  Identities=22%  Similarity=0.392  Sum_probs=55.8

Q ss_pred             CeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEEECCCCC------
Q 036317           25 RLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSARSGK------   94 (106)
Q Consensus        25 ~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd~~~~~------   94 (106)
                      +.++.++.||.+++.+ ..+++    ..|.+.+.+..|+|||           .=++|+++||.|++|.- +|+      
T Consensus        76 d~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dG-----------tgLlt~GEDG~iKiWSr-sGMLRStl~  142 (737)
T KOG1524|consen   76 DTLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDG-----------AGLLTAGEDGVIKIWSR-SGMLRSTVV  142 (737)
T ss_pred             ceEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCC-----------ceeeeecCCceEEEEec-cchHHHHHh
Confidence            5678888999998876 35555    3355666778999999           99999999999999975 454      


Q ss_pred             ----CCcEEEeCCCCC
Q 036317           95 ----EPPVIKWAPGSL  106 (106)
Q Consensus        95 ----~v~~i~~sp~~~  106 (106)
                          +|.|++|.|++.
T Consensus       143 Q~~~~v~c~~W~p~S~  158 (737)
T KOG1524|consen  143 QNEESIRCARWAPNSN  158 (737)
T ss_pred             hcCceeEEEEECCCCC
Confidence                999999999863

>PRK04792 tolB translocation protein TolB; Provisional

Probab=97.98  E-value=0.00013  Score=54.81  Aligned_cols=70  Identities=21%  Similarity=0.238  Sum_probs=47.8

Q ss_pred             CeeEEEECCCCCeEEEE-eCCC--eEEEEEcCCCce---eccCCCcEEEEEecCCcceeeeeeecccEEEEecC-C--Cc
Q 036317           14 DANEVKLSNDGRLMLLT-TLEG--HIHVLHSFQGTL---PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSG-D--GS   84 (106)
Q Consensus        14 ~v~~v~~spdg~~l~~~-~~~~--~i~l~d~~~~~~---~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~-d--~~   84 (106)
                      .....+|||||+.++.+ ..++  .|+++|..+++.   ..........+|+|||           ++|+..+. +  ..
T Consensus       263 ~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG-----------~~I~f~s~~~g~~~  331 (448)
T PRK04792        263 INGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDG-----------KSLIFTSERGGKPQ  331 (448)
T ss_pred             CcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECCCC-----------CEEEEEECCCCCce
Confidence            34578999999988764 4455  478889888876   2222334568999999           76655443 3  35


Q ss_pred             EEEEECCCCC
Q 036317           85 VYAWSARSGK   94 (106)
Q Consensus        85 i~~wd~~~~~   94 (106)
                      |+++|+++++
T Consensus       332 Iy~~dl~~g~  341 (448)
T PRK04792        332 IYRVNLASGK  341 (448)
T ss_pred             EEEEECCCCC
Confidence            7777887776

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.98  E-value=2.9e-05  Score=57.38  Aligned_cols=75  Identities=17%  Similarity=0.253  Sum_probs=62.7

Q ss_pred             CCCCCeeEEEECCCCC-eEEEEeCCCeEEEEEcCCCce---eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcE
Q 036317           10 GDVSDANEVKLSNDGR-LMLLTTLEGHIHVLHSFQGTL---PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSV   85 (106)
Q Consensus        10 ~~~~~v~~v~~spdg~-~l~~~~~~~~i~l~d~~~~~~---~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i   85 (106)
                      ++...|++++|||..+ .+..++-++.|+|.|+++...   -.....+.+|+|.-|.          +.+|.+|..+|.|
T Consensus       191 ~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde----------~h~IYaGl~nG~V  260 (463)
T KOG1645|consen  191 GEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDE----------RHVIYAGLQNGMV  260 (463)
T ss_pred             ccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCC----------cceeEEeccCceE
Confidence            4445899999999988 577888999999999999877   2234677899999887          4789999999999


Q ss_pred             EEEECCCCC
Q 036317           86 YAWSARSGK   94 (106)
Q Consensus        86 ~~wd~~~~~   94 (106)
                      +++|++..+
T Consensus       261 lvyD~R~~~  269 (463)
T KOG1645|consen  261 LVYDMRQPE  269 (463)
T ss_pred             EEEEccCCC
Confidence            999999765

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=97.97  E-value=1.7e-05  Score=58.74  Aligned_cols=82  Identities=15%  Similarity=0.153  Sum_probs=65.8

Q ss_pred             CceeeecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce---------ec-cC-CCcEEEEEecCCcceeeeee
Q 036317            2 PFDIFSDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL---------PV-SH-NSTLEASFSQHLSLVALSVL   70 (106)
Q Consensus         2 ~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~---------~~-~~-~~~~~~~fs~d~~~~~~~~~   70 (106)
                      ||+.=.+.+|.+-|++++||.++++|++++.|..+++|+....-.         .. ++ .-+-++.|...+        
T Consensus        46 ~~~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N--------  117 (609)
T KOG4227|consen   46 PFCQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLEN--------  117 (609)
T ss_pred             chhhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCC--------
Confidence            344445667888999999999999999999999999999753321         11 22 345678898888        


Q ss_pred             ecccEEEEecCCCcEEEEECCCCC
Q 036317           71 ILRSWVLEGSGDGSVYAWSARSGK   94 (106)
Q Consensus        71 ~~~~~i~t~s~d~~i~~wd~~~~~   94 (106)
                         +++.+|..+++|.+-|+++.+
T Consensus       118 ---~~~~SG~~~~~VI~HDiEt~q  138 (609)
T KOG4227|consen  118 ---RFLYSGERWGTVIKHDIETKQ  138 (609)
T ss_pred             ---eeEecCCCcceeEeeecccce
Confidence               999999999999999999877

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=97.94  E-value=0.00015  Score=51.55  Aligned_cols=79  Identities=14%  Similarity=0.015  Sum_probs=62.5

Q ss_pred             eeEEEECCCCCeEEEEeCCCeEEEEEcCCCce--ec-----cCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEE
Q 036317           15 ANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL--PV-----SHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYA   87 (106)
Q Consensus        15 v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~--~~-----~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~   87 (106)
                      ++++++|+|++++++.+....|.+|.+...-.  ..     -...--..+|+...           ..+|++..||++.|
T Consensus       161 ~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~-----------~~FAv~~Qdg~~~I  229 (344)
T KOG4532|consen  161 QNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSEND-----------LQFAVVFQDGTCAI  229 (344)
T ss_pred             eeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCc-----------ceEEEEecCCcEEE
Confidence            78999999999999999999999998764322  11     11122347899888           89999999999999


Q ss_pred             EECCCCC---------------CCcEEEeCCC
Q 036317           88 WSARSGK---------------EPPVIKWAPG  104 (106)
Q Consensus        88 wd~~~~~---------------~v~~i~~sp~  104 (106)
                      ||++...               .++...|+|.
T Consensus       230 ~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~  261 (344)
T KOG4532|consen  230 YDVRNMATPMAEISSTRPHHNGAFRVCRFSLY  261 (344)
T ss_pred             EEecccccchhhhcccCCCCCCceEEEEecCC
Confidence            9999754               7888888874

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=97.93  E-value=0.00013  Score=56.38  Aligned_cols=71  Identities=15%  Similarity=0.161  Sum_probs=54.2

Q ss_pred             CCCeeEEEECCC-CCeEEEEeCCCeEEEEEcCCCce----------eccCCCcEEEEEecCCcceeeeeeecccE--EEE
Q 036317           12 VSDANEVKLSND-GRLMLLTTLEGHIHVLHSFQGTL----------PVSHNSTLEASFSQHLSLVALSVLILRSW--VLE   78 (106)
Q Consensus        12 ~~~v~~v~~spd-g~~l~~~~~~~~i~l~d~~~~~~----------~~~~~~~~~~~fs~d~~~~~~~~~~~~~~--i~t   78 (106)
                      ..+|.+++|+|. ...++.|+.+|+|.+||...+..          ..+..++..+.|-++.           .-  +++
T Consensus       242 ~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~-----------~~~~f~s  310 (555)
T KOG1587|consen  242 PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNE-----------HNTEFFS  310 (555)
T ss_pred             CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccC-----------CCCceEE
Confidence            358999999994 66777888999999999876543          1244566677777654           44  788


Q ss_pred             ecCCCcEEEEECCCC
Q 036317           79 GSGDGSVYAWSARSG   93 (106)
Q Consensus        79 ~s~d~~i~~wd~~~~   93 (106)
                      +|.||.|..|+++.-
T Consensus       311 ~ssDG~i~~W~~~~l  325 (555)
T KOG1587|consen  311 LSSDGSICSWDTDML  325 (555)
T ss_pred             EecCCcEeeeecccc
Confidence            888999999988753

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=97.91  E-value=0.00027  Score=53.64  Aligned_cols=85  Identities=13%  Similarity=0.157  Sum_probs=73.2

Q ss_pred             CCCCCeeEEEECCCCCeEEEEeCCC-eEEEEEcCCCce---eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcE
Q 036317           10 GDVSDANEVKLSNDGRLMLLTTLEG-HIHVLHSFQGTL---PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSV   85 (106)
Q Consensus        10 ~~~~~v~~v~~spdg~~l~~~~~~~-~i~l~d~~~~~~---~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i   85 (106)
                      ++++.|+...+..+++.++.+..|+ .+-++|..++++   ...-+.+.++.-+|||           ++++.+.....+
T Consensus       357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dG-----------K~~vvaNdr~el  425 (668)
T COG4946         357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDG-----------KKVVVANDRFEL  425 (668)
T ss_pred             CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCC-----------cEEEEEcCceEE
Confidence            4567899999999999899999888 899999999987   3344567789999999           999999999999


Q ss_pred             EEEECCCCC----------CCcEEEeCCCC
Q 036317           86 YAWSARSGK----------EPPVIKWAPGS  105 (106)
Q Consensus        86 ~~wd~~~~~----------~v~~i~~sp~~  105 (106)
                      .+.|+++|+          -|..+.|||+.
T Consensus       426 ~vididngnv~~idkS~~~lItdf~~~~ns  455 (668)
T COG4946         426 WVIDIDNGNVRLIDKSEYGLITDFDWHPNS  455 (668)
T ss_pred             EEEEecCCCeeEecccccceeEEEEEcCCc
Confidence            999999997          78888999874

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=97.90  E-value=7.2e-05  Score=60.20  Aligned_cols=68  Identities=16%  Similarity=0.120  Sum_probs=58.4

Q ss_pred             eEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEEECC
Q 036317           16 NEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSAR   91 (106)
Q Consensus        16 ~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd~~   91 (106)
                      .-+.++++.-++++++.-+++.+|+..-.+.    .+|.+.+-++.++-||           +++++.|+|+++++|+++
T Consensus       137 ~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg-----------~~i~s~SdDRsiRlW~i~  205 (967)
T KOG0974|consen  137 LIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDG-----------RYIASVSDDRSIRLWPID  205 (967)
T ss_pred             EEEeccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCC-----------cEEEEEecCcceeeeecc
Confidence            3455678888999999999999999873333    5678888899999999           999999999999999999


Q ss_pred             CCC
Q 036317           92 SGK   94 (106)
Q Consensus        92 ~~~   94 (106)
                      +++
T Consensus       206 s~~  208 (967)
T KOG0974|consen  206 SRE  208 (967)
T ss_pred             ccc
Confidence            988

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=97.90  E-value=0.00015  Score=53.17  Aligned_cols=60  Identities=15%  Similarity=0.127  Sum_probs=45.5

Q ss_pred             CCeeEEEECCCCCeEEEEeCCCeEEEEEcCCC---ce-eccCCCcEEEEEecCCcceeeeeeec
Q 036317           13 SDANEVKLSNDGRLMLLTTLEGHIHVLHSFQG---TL-PVSHNSTLEASFSQHLSLVALSVLIL   72 (106)
Q Consensus        13 ~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~---~~-~~~~~~~~~~~fs~d~~~~~~~~~~~   72 (106)
                      +.++-+.|||||.++++++-|...++|+....   +. .-..+++...+|+|+|+.|.+++...
T Consensus       239 gg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgs  302 (445)
T KOG2139|consen  239 GGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGS  302 (445)
T ss_pred             CceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCC
Confidence            46889999999999999999999999964322   22 44555888899999996665554333

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=97.89  E-value=0.00012  Score=52.26  Aligned_cols=83  Identities=20%  Similarity=0.213  Sum_probs=60.6

Q ss_pred             CCCCeeEEEECC-CCCeEEEEeCCCeEEEEEcC-CCce-----eccCCCcEEEEEe-cCCcceeeeeeecccEEEEecCC
Q 036317           11 DVSDANEVKLSN-DGRLMLLTTLEGHIHVLHSF-QGTL-----PVSHNSTLEASFS-QHLSLVALSVLILRSWVLEGSGD   82 (106)
Q Consensus        11 ~~~~v~~v~~sp-dg~~l~~~~~~~~i~l~d~~-~~~~-----~~~~~~~~~~~fs-~d~~~~~~~~~~~~~~i~t~s~d   82 (106)
                      |.-++...+|+. +.+.+.+++.|+.+..||.. .++.     +.|...++++.-+ |+.           .+|+||++|
T Consensus       164 He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~-----------~~I~TGsYD  232 (339)
T KOG0280|consen  164 HEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKP-----------TYIATGSYD  232 (339)
T ss_pred             cceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCC-----------ceEEEeccc
Confidence            344777788875 45677899999999999998 3433     3345555555444 456           899999999


Q ss_pred             CcEEEEECCC-CC---------CCcEEEeCCC
Q 036317           83 GSVYAWSARS-GK---------EPPVIKWAPG  104 (106)
Q Consensus        83 ~~i~~wd~~~-~~---------~v~~i~~sp~  104 (106)
                      ..|++||.+. ++         .|..++++|.
T Consensus       233 e~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~  264 (339)
T KOG0280|consen  233 ECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPE  264 (339)
T ss_pred             cceeeeehhcccCccccCccccceEEEEecch
Confidence            9999999995 34         6677777763

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=97.86  E-value=5.2e-05  Score=56.94  Aligned_cols=71  Identities=10%  Similarity=0.086  Sum_probs=61.5

Q ss_pred             CCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEE
Q 036317           13 SDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAW   88 (106)
Q Consensus        13 ~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~w   88 (106)
                      +++..++-+|-.-.+-++..+|+|-+|.....+.    ..+.+.+.++++.++|           +|.+|.+.|..++||
T Consensus       252 G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G-----------~YMaTtG~Dr~~kIW  320 (545)
T KOG1272|consen  252 GRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGG-----------RYMATTGLDRKVKIW  320 (545)
T ss_pred             CccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCC-----------cEEeecccccceeEe
Confidence            4677778888888888889999999999876665    5678888899999999           999999999999999


Q ss_pred             ECCCCC
Q 036317           89 SARSGK   94 (106)
Q Consensus        89 d~~~~~   94 (106)
                      |++.-.
T Consensus       321 DlR~~~  326 (545)
T KOG1272|consen  321 DLRNFY  326 (545)
T ss_pred             eecccc
Confidence            998654

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=97.86  E-value=7.8e-05  Score=52.69  Aligned_cols=86  Identities=7%  Similarity=0.071  Sum_probs=67.0

Q ss_pred             CCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCC--Cce------eccCCCcEEEEEecCCcceeeeeeecccEEEEec
Q 036317            9 GGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQ--GTL------PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGS   80 (106)
Q Consensus         9 ~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~--~~~------~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s   80 (106)
                      ..+.++|.++++.+.-..=++++.+..+..|++..  +.+      .-.+..+..+.+-||+           +.++|++
T Consensus       202 ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~-----------KIlATAG  270 (323)
T KOG0322|consen  202 ASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDG-----------KILATAG  270 (323)
T ss_pred             hhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCC-----------cEEeecc
Confidence            34567899999987655557778888888887653  333      1122234568999999           9999999


Q ss_pred             CCCcEEEEECCCCC----------CCcEEEeCCCC
Q 036317           81 GDGSVYAWSARSGK----------EPPVIKWAPGS  105 (106)
Q Consensus        81 ~d~~i~~wd~~~~~----------~v~~i~~sp~~  105 (106)
                      =|+.|+++..++++          .|++++|+|+.
T Consensus       271 WD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~  305 (323)
T KOG0322|consen  271 WDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDC  305 (323)
T ss_pred             cCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCC
Confidence            99999999999998          89999999984

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=97.85  E-value=0.00013  Score=53.13  Aligned_cols=80  Identities=16%  Similarity=0.157  Sum_probs=62.7

Q ss_pred             CeeEEEECCCCCeEEEEe-CCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecC-CCcEEE
Q 036317           14 DANEVKLSNDGRLMLLTT-LEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSG-DGSVYA   87 (106)
Q Consensus        14 ~v~~v~~spdg~~l~~~~-~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~-d~~i~~   87 (106)
                      .|..+.|+.|..+++.+. .++.|.+|++...+-    ......+.+.+|||||           +.|+..++ |-.|.+
T Consensus        50 ki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdg-----------rhiL~tseF~lriTV  118 (447)
T KOG4497|consen   50 KIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDG-----------RHILLTSEFDLRITV  118 (447)
T ss_pred             HhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCc-----------ceEeeeecceeEEEE
Confidence            677888999988887664 666999999877665    3345566789999999           77766655 779999


Q ss_pred             EECCCCC---------CCcEEEeCCC
Q 036317           88 WSARSGK---------EPPVIKWAPG  104 (106)
Q Consensus        88 wd~~~~~---------~v~~i~~sp~  104 (106)
                      |.+.+.+         -+..++|+|+
T Consensus       119 WSL~t~~~~~~~~pK~~~kg~~f~~d  144 (447)
T KOG4497|consen  119 WSLNTQKGYLLPHPKTNVKGYAFHPD  144 (447)
T ss_pred             EEeccceeEEecccccCceeEEECCC
Confidence            9999876         5678888875

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=97.85  E-value=0.00012  Score=53.27  Aligned_cols=34  Identities=24%  Similarity=0.271  Sum_probs=26.7

Q ss_pred             CCeeEEEECCCCCeEEE-EeCCCeEEEEEcCCCce
Q 036317           13 SDANEVKLSNDGRLMLL-TTLEGHIHVLHSFQGTL   46 (106)
Q Consensus        13 ~~v~~v~~spdg~~l~~-~~~~~~i~l~d~~~~~~   46 (106)
                      ..+.++.|||||+.++. +..+-.|.+|.+-+.+.
T Consensus        92 agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~  126 (447)
T KOG4497|consen   92 AGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKG  126 (447)
T ss_pred             CcceeeeECCCcceEeeeecceeEEEEEEecccee
Confidence            48999999999987764 45788899998765543

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=97.83  E-value=7.4e-05  Score=58.23  Aligned_cols=75  Identities=15%  Similarity=0.156  Sum_probs=57.1

Q ss_pred             eecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce--eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCC
Q 036317            6 FSDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL--PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDG   83 (106)
Q Consensus         6 ~~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~--~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~   83 (106)
                      +.+.+|...|.+++.=|++ .+++++.|++|++|...+-..  .+|...+..+++-+++           . +++++-||
T Consensus       134 ~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~~~~l~tf~gHtD~VRgL~vl~~~-----------~-flScsNDg  200 (745)
T KOG0301|consen  134 YSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKGGTLLKTFSGHTDCVRGLAVLDDS-----------H-FLSCSNDG  200 (745)
T ss_pred             cccCCcchheeeeeecCCC-cEEeccCcceeeeccCCchhhhhccchhheeeeEEecCC-----------C-eEeecCCc
Confidence            4567788888888888888 588999999999998733221  5566666677877775           4 57888999


Q ss_pred             cEEEEECCCCC
Q 036317           84 SVYAWSARSGK   94 (106)
Q Consensus        84 ~i~~wd~~~~~   94 (106)
                      .|++|++ +|+
T Consensus       201 ~Ir~w~~-~ge  210 (745)
T KOG0301|consen  201 SIRLWDL-DGE  210 (745)
T ss_pred             eEEEEec-cCc
Confidence            9999999 555

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=97.83  E-value=0.00037  Score=50.56  Aligned_cols=70  Identities=23%  Similarity=0.379  Sum_probs=50.6

Q ss_pred             CeeEEEECCCCCeEEEEe-CCCeEEEEEc--CCCce------eccCCCcEEEEEecCCcceeeeeeecccEEEEec-CCC
Q 036317           14 DANEVKLSNDGRLMLLTT-LEGHIHVLHS--FQGTL------PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGS-GDG   83 (106)
Q Consensus        14 ~v~~v~~spdg~~l~~~~-~~~~i~l~d~--~~~~~------~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s-~d~   83 (106)
                      ....++++|||++|.++. ..+.|.++++  .++++      +..-..+..+.++|+|           ++|+.+. .++
T Consensus       246 ~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g-----------~~l~Va~~~s~  314 (345)
T PF10282_consen  246 APAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDG-----------RYLYVANQDSN  314 (345)
T ss_dssp             SEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTS-----------SEEEEEETTTT
T ss_pred             CceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCC-----------CEEEEEecCCC
Confidence            578999999999987765 6688999998  44665      2222346779999999           8888776 456


Q ss_pred             cEEEEEC--CCCC
Q 036317           84 SVYAWSA--RSGK   94 (106)
Q Consensus        84 ~i~~wd~--~~~~   94 (106)
                      .|.+|++  ++|+
T Consensus       315 ~v~vf~~d~~tG~  327 (345)
T PF10282_consen  315 TVSVFDIDPDTGK  327 (345)
T ss_dssp             EEEEEEEETTTTE
T ss_pred             eEEEEEEeCCCCc
Confidence            8998866  4665

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK01029 tolB translocation protein TolB; Provisional

Probab=97.83  E-value=0.00036  Score=52.26  Aligned_cols=79  Identities=13%  Similarity=0.165  Sum_probs=51.2

Q ss_pred             eeEEEECCCCCeEEEEeC-CCe--EEEEEcCC--Cce---eccCCCcEEEEEecCCcceeeeeeecccEEEEecC---CC
Q 036317           15 ANEVKLSNDGRLMLLTTL-EGH--IHVLHSFQ--GTL---PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSG---DG   83 (106)
Q Consensus        15 v~~v~~spdg~~l~~~~~-~~~--i~l~d~~~--~~~---~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~---d~   83 (106)
                      .....|||||++|+..+. ++.  +.++++..  +..   ...........|||||           ++|+..+.   ..
T Consensus       283 ~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG-----------~~Laf~~~~~g~~  351 (428)
T PRK01029        283 QGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDG-----------KKIAFCSVIKGVR  351 (428)
T ss_pred             cCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCC-----------CEEEEEEcCCCCc
Confidence            457899999998887663 453  44555432  222   2222344568999999           76665433   24


Q ss_pred             cEEEEECCCCC---------CCcEEEeCCC
Q 036317           84 SVYAWSARSGK---------EPPVIKWAPG  104 (106)
Q Consensus        84 ~i~~wd~~~~~---------~v~~i~~sp~  104 (106)
                      .|++||+++++         .+....|+|+
T Consensus       352 ~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpD  381 (428)
T PRK01029        352 QICVYDLATGRDYQLTTSPENKESPSWAID  381 (428)
T ss_pred             EEEEEECCCCCeEEccCCCCCccceEECCC
Confidence            79999999886         3456677775

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.82  E-value=0.00033  Score=50.48  Aligned_cols=64  Identities=13%  Similarity=0.203  Sum_probs=52.1

Q ss_pred             eCCCeEEEEEcCCCce------eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCC-cEEEEECCCCC---------
Q 036317           31 TLEGHIHVLHSFQGTL------PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDG-SVYAWSARSGK---------   94 (106)
Q Consensus        31 ~~~~~i~l~d~~~~~~------~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~-~i~~wd~~~~~---------   94 (106)
                      -.-|++.|.|+..-+.      +.|...+..++...+|           ..|||+|..| -|+|||.++|.         
T Consensus       156 ~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~G-----------t~vATaStkGTLIRIFdt~~g~~l~E~RRG~  224 (346)
T KOG2111|consen  156 FKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQG-----------TLVATASTKGTLIRIFDTEDGTLLQELRRGV  224 (346)
T ss_pred             CccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCc-----------cEEEEeccCcEEEEEEEcCCCcEeeeeecCC
Confidence            3558888888754333      4466667778999999           9999999998 58999999997         


Q ss_pred             ---CCcEEEeCCCC
Q 036317           95 ---EPPVIKWAPGS  105 (106)
Q Consensus        95 ---~v~~i~~sp~~  105 (106)
                         .|.|++|||+.
T Consensus       225 d~A~iy~iaFSp~~  238 (346)
T KOG2111|consen  225 DRADIYCIAFSPNS  238 (346)
T ss_pred             chheEEEEEeCCCc
Confidence               88999999975

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=97.72  E-value=0.00018  Score=52.27  Aligned_cols=66  Identities=24%  Similarity=0.363  Sum_probs=47.7

Q ss_pred             CeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEec--CCcceeeeeeecccEEEEecCCCcEEEEECCCCCCCcE
Q 036317           25 RLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQ--HLSLVALSVLILRSWVLEGSGDGSVYAWSARSGKEPPV   98 (106)
Q Consensus        25 ~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~--d~~~~~~~~~~~~~~i~t~s~d~~i~~wd~~~~~~v~~   98 (106)
                      ..+|++..++.+++||..+++.    ..+...+..+.|.-  ..           .-|.+++.||+|++||+++...+..
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~-----------h~v~s~ssDG~Vr~wD~Rs~~e~a~  109 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSP-----------HGVISCSSDGTVRLWDIRSQAESAR  109 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCC-----------CeeEEeccCCeEEEEEeecchhhhh
Confidence            4588889999999999999876    33333333455554  23           5688999999999999998764444


Q ss_pred             EEe
Q 036317           99 IKW  101 (106)
Q Consensus        99 i~~  101 (106)
                      +.|
T Consensus       110 ~~~  112 (376)
T KOG1188|consen  110 ISW  112 (376)
T ss_pred             eec
Confidence            444

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=97.69  E-value=0.00048  Score=48.44  Aligned_cols=74  Identities=18%  Similarity=0.325  Sum_probs=51.1

Q ss_pred             cCCCCCCeeEEEE-CCCCCeEEEEeCCCeEEEEEcCCCce---ec--cCCCcEE-------EEEecCCcceeeeeeeccc
Q 036317            8 DGGDVSDANEVKL-SNDGRLMLLTTLEGHIHVLHSFQGTL---PV--SHNSTLE-------ASFSQHLSLVALSVLILRS   74 (106)
Q Consensus         8 ~~~~~~~v~~v~~-spdg~~l~~~~~~~~i~l~d~~~~~~---~~--~~~~~~~-------~~fs~d~~~~~~~~~~~~~   74 (106)
                      ..||..-|.++.- +..++ +++++.||++++||.++++.   ..  .+.....       -+..-+.           .
T Consensus       152 ~rGHtDYvH~vv~R~~~~q-ilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~e-----------d  219 (325)
T KOG0649|consen  152 YRGHTDYVHSVVGRNANGQ-ILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNE-----------D  219 (325)
T ss_pred             EcCCcceeeeeeecccCcc-eeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccC-----------c
Confidence            4577778888888 66777 89999999999999999886   11  1111111       1223344           7


Q ss_pred             EEEEecCCCcEEEEECCCCC
Q 036317           75 WVLEGSGDGSVYAWSARSGK   94 (106)
Q Consensus        75 ~i~t~s~d~~i~~wd~~~~~   94 (106)
                      ++++|.. ..+.+|++++.+
T Consensus       220 WlvCGgG-p~lslwhLrsse  238 (325)
T KOG0649|consen  220 WLVCGGG-PKLSLWHLRSSE  238 (325)
T ss_pred             eEEecCC-CceeEEeccCCC
Confidence            7777754 378899998877

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=97.67  E-value=3.5e-05  Score=61.37  Aligned_cols=70  Identities=21%  Similarity=0.329  Sum_probs=62.7

Q ss_pred             ecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCC
Q 036317            7 SDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGD   82 (106)
Q Consensus         7 ~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d   82 (106)
                      ...||.++|+.++.+.....+++++.|..|++|-..++..    .++.+.++++.|+|--               +.+.|
T Consensus       227 s~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~---------------sss~d  291 (1113)
T KOG0644|consen  227 SCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA---------------SSSDD  291 (1113)
T ss_pred             cCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCccc---------------cCCCC
Confidence            3467888999999999999999999999999999999887    6788999999999874               57789


Q ss_pred             CcEEEEECC
Q 036317           83 GSVYAWSAR   91 (106)
Q Consensus        83 ~~i~~wd~~   91 (106)
                      |++++||.+
T Consensus       292 gt~~~wd~r  300 (1113)
T KOG0644|consen  292 GTCRIWDAR  300 (1113)
T ss_pred             CceEecccc
Confidence            999999998

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=97.66  E-value=0.00053  Score=56.11  Aligned_cols=80  Identities=14%  Similarity=0.172  Sum_probs=60.7

Q ss_pred             CCeeEEEECCCCCe-EEEEeCCCeEEEEEcCCC-ce----e---ccCCC-cEEEEEecCCcceeeeeeecccEEEEecCC
Q 036317           13 SDANEVKLSNDGRL-MLLTTLEGHIHVLHSFQG-TL----P---VSHNS-TLEASFSQHLSLVALSVLILRSWVLEGSGD   82 (106)
Q Consensus        13 ~~v~~v~~spdg~~-l~~~~~~~~i~l~d~~~~-~~----~---~~~~~-~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d   82 (106)
                      .+|..+.+-+.|-- +++++.+|.|.+||+... +.    .   -..+. .++..-+++.           ..|++|+. 
T Consensus      1257 ~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~ha-----------piiAsGs~- 1324 (1387)
T KOG1517|consen 1257 EPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHA-----------PIIASGSA- 1324 (1387)
T ss_pred             ccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCC-----------CeeeecCc-
Confidence            35999999886654 999999999999998763 22    1   11232 5667778888           99999998 


Q ss_pred             CcEEEEECCCCC----------------CCcEEEeCCC
Q 036317           83 GSVYAWSARSGK----------------EPPVIKWAPG  104 (106)
Q Consensus        83 ~~i~~wd~~~~~----------------~v~~i~~sp~  104 (106)
                      +.|+||++...+                .+.|++|+|-
T Consensus      1325 q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~ 1362 (1387)
T KOG1517|consen 1325 QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPH 1362 (1387)
T ss_pred             ceEEEEecChhhhcccccCcccccCcCCCcceeeecch
Confidence            899999997433                6678888874

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.66  E-value=0.00037  Score=54.05  Aligned_cols=70  Identities=13%  Similarity=0.194  Sum_probs=57.0

Q ss_pred             CeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce---eccCCCc-EEEEEecCCcceeeeeeecccEEEEecCCCcEEEEE
Q 036317           14 DANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL---PVSHNST-LEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWS   89 (106)
Q Consensus        14 ~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~---~~~~~~~-~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd   89 (106)
                      .+.-+.|+|.-..+|.++.+|++.+....-.++   +.+...+ .+.+|-|||           +.|+.|-+||+|++-|
T Consensus        22 ~i~~~ewnP~~dLiA~~t~~gelli~R~n~qRlwtip~p~~~v~~sL~W~~DG-----------kllaVg~kdG~I~L~D   90 (665)
T KOG4640|consen   22 NIKRIEWNPKMDLIATRTEKGELLIHRLNWQRLWTIPIPGENVTASLCWRPDG-----------KLLAVGFKDGTIRLHD   90 (665)
T ss_pred             ceEEEEEcCccchhheeccCCcEEEEEeccceeEeccCCCCccceeeeecCCC-----------CEEEEEecCCeEEEEE
Confidence            788999999999999999999887766554444   2222233 479999999           9999999999999999


Q ss_pred             CCCCC
Q 036317           90 ARSGK   94 (106)
Q Consensus        90 ~~~~~   94 (106)
                      +++|.
T Consensus        91 ve~~~   95 (665)
T KOG4640|consen   91 VEKGG   95 (665)
T ss_pred             ccCCC
Confidence            99987

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=97.60  E-value=0.00038  Score=53.53  Aligned_cols=67  Identities=16%  Similarity=0.192  Sum_probs=52.0

Q ss_pred             eEEEECCCCCeEEEEeCCCeEEEEEcCCCce--eccCCCcEEEEEecCCcceeeeeeecccEEEEecC-----------C
Q 036317           16 NEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL--PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSG-----------D   82 (106)
Q Consensus        16 ~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~--~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~-----------d   82 (106)
                      +.+.|||.|.||++-...| |.+|-..+-..  ...|..+.-+.|||..           +|++|=+.           .
T Consensus       214 tyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~Hp~Vq~idfSP~E-----------kYLVT~s~~p~~~~~~d~e~  281 (698)
T KOG2314|consen  214 TYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFYHPGVQFIDFSPNE-----------KYLVTYSPEPIIVEEDDNEG  281 (698)
T ss_pred             eeEEecCCceEEEEEeccc-eeeecCccHHHHHhccCCCceeeecCCcc-----------ceEEEecCCccccCcccCCC
Confidence            5799999999888876666 78888766433  4456667779999999           77776543           3


Q ss_pred             CcEEEEECCCCC
Q 036317           83 GSVYAWSARSGK   94 (106)
Q Consensus        83 ~~i~~wd~~~~~   94 (106)
                      ..+.|||+.+|.
T Consensus       282 ~~l~IWDI~tG~  293 (698)
T KOG2314|consen  282 QQLIIWDIATGL  293 (698)
T ss_pred             ceEEEEEccccc
Confidence            589999999997

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=97.60  E-value=0.00038  Score=51.29  Aligned_cols=66  Identities=20%  Similarity=0.325  Sum_probs=46.5

Q ss_pred             EEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEEECCCCC---------
Q 036317           28 LLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSARSGK---------   94 (106)
Q Consensus        28 ~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd~~~~~---------   94 (106)
                      ++-..++++.++|..+.+.    +..........|+|||           +++...+.|+.|.++|+.+++         
T Consensus        10 V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dg-----------r~~yv~~rdg~vsviD~~~~~~v~~i~~G~   78 (369)
T PF02239_consen   10 VVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDG-----------RYLYVANRDGTVSVIDLATGKVVATIKVGG   78 (369)
T ss_dssp             EEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-S-----------SEEEEEETTSEEEEEETTSSSEEEEEE-SS
T ss_pred             EEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCC-----------CEEEEEcCCCeEEEEECCcccEEEEEecCC
Confidence            4556789999999999887    2222233457899999           999999999999999999998         


Q ss_pred             CCcEEEeCCC
Q 036317           95 EPPVIKWAPG  104 (106)
Q Consensus        95 ~v~~i~~sp~  104 (106)
                      ...++++||+
T Consensus        79 ~~~~i~~s~D   88 (369)
T PF02239_consen   79 NPRGIAVSPD   88 (369)
T ss_dssp             EEEEEEE--T
T ss_pred             CcceEEEcCC
Confidence            4455666653

...

>smart00320 WD40 WD40 repeats

Probab=97.57  E-value=0.00028  Score=32.77  Aligned_cols=32  Identities=22%  Similarity=0.412  Sum_probs=28.5

Q ss_pred             CCCCCCeeEEEECCCCCeEEEEeCCCeEEEEE
Q 036317            9 GGDVSDANEVKLSNDGRLMLLTTLEGHIHVLH   40 (106)
Q Consensus         9 ~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d   40 (106)
                      ..+...|.++.|+++++.+++++.++.+++||
T Consensus         9 ~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        9 KGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            35567899999999999999999999999986

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PRK04043 tolB translocation protein TolB; Provisional

Probab=97.56  E-value=0.0019  Score=48.36  Aligned_cols=70  Identities=20%  Similarity=0.195  Sum_probs=47.5

Q ss_pred             CeeEEEECCCCCeEEEEeC---CCeEEEEEcCCCce---eccCCCcEEEEEecCCcceeeeeeecccEEEEecC-CC--c
Q 036317           14 DANEVKLSNDGRLMLLTTL---EGHIHVLHSFQGTL---PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSG-DG--S   84 (106)
Q Consensus        14 ~v~~v~~spdg~~l~~~~~---~~~i~l~d~~~~~~---~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~-d~--~   84 (106)
                      ......|||||+.++....   +..+.++|+.+++.   ...........|+|||           +.|+-.+. .+  .
T Consensus       234 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG-----------~~I~F~Sdr~g~~~  302 (419)
T PRK04043        234 MLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDD-----------KRIVFVSDRLGYPN  302 (419)
T ss_pred             cEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEEcccCCCccCccEECCCC-----------CEEEEEECCCCCce
Confidence            3556789999998876542   35788889888776   2222223457899999           65555442 22  7


Q ss_pred             EEEEECCCCC
Q 036317           85 VYAWSARSGK   94 (106)
Q Consensus        85 i~~wd~~~~~   94 (106)
                      |++.|+.+|+
T Consensus       303 Iy~~dl~~g~  312 (419)
T PRK04043        303 IFMKKLNSGS  312 (419)
T ss_pred             EEEEECCCCC
Confidence            8888888776

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=97.56  E-value=0.00085  Score=50.00  Aligned_cols=72  Identities=7%  Similarity=-0.051  Sum_probs=61.8

Q ss_pred             CCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce------eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcE
Q 036317           12 VSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL------PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSV   85 (106)
Q Consensus        12 ~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~------~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i   85 (106)
                      ++.|.+++|+...+++.++..++++.+-|+++.+-      ....+.+....-+|..           ..+++.+.++.|
T Consensus       105 ~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~D-----------N~~~~~t~~~~V  173 (609)
T KOG4227|consen  105 RSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTD-----------NTLIVVTRAKLV  173 (609)
T ss_pred             ccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCC-----------ceEEEEecCceE
Confidence            36899999999999999999999999999998765      2234467778888988           999999999999


Q ss_pred             EEEECCCCC
Q 036317           86 YAWSARSGK   94 (106)
Q Consensus        86 ~~wd~~~~~   94 (106)
                      .+||.+..+
T Consensus       174 ~~~D~Rd~~  182 (609)
T KOG4227|consen  174 SFIDNRDRQ  182 (609)
T ss_pred             EEEeccCCC
Confidence            999999766

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=97.56  E-value=0.0017  Score=47.77  Aligned_cols=75  Identities=19%  Similarity=0.201  Sum_probs=56.5

Q ss_pred             CeeEEEECCCCCeEEEEeC----------CCeEEEEEcCCCceec---cCCCcEEEEEecCCcceeeeeeeccc-EEEEe
Q 036317           14 DANEVKLSNDGRLMLLTTL----------EGHIHVLHSFQGTLPV---SHNSTLEASFSQHLSLVALSVLILRS-WVLEG   79 (106)
Q Consensus        14 ~v~~v~~spdg~~l~~~~~----------~~~i~l~d~~~~~~~~---~~~~~~~~~fs~d~~~~~~~~~~~~~-~i~t~   79 (106)
                      .+.-++++|||+++.+...          .+++.++|..+++...   -...+..+.++||+           + .+.+.
T Consensus       249 g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dg-----------kp~lyvt  317 (352)
T TIGR02658       249 GWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDA-----------KPLLYAL  317 (352)
T ss_pred             cceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCC-----------CeEEEEe
Confidence            3445999999998887432          2589999999998811   12355679999999           8 76666


Q ss_pred             c-CCCcEEEEECCCCCCCcEE
Q 036317           80 S-GDGSVYAWSARSGKEPPVI   99 (106)
Q Consensus        80 s-~d~~i~~wd~~~~~~v~~i   99 (106)
                      + .++.|.+.|+.+++.+..+
T Consensus       318 n~~s~~VsViD~~t~k~i~~i  338 (352)
T TIGR02658       318 STGDKTLYIFDAETGKELSSV  338 (352)
T ss_pred             CCCCCcEEEEECcCCeEEeee
Confidence            5 5778999999999866555

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=97.55  E-value=0.00048  Score=53.03  Aligned_cols=74  Identities=14%  Similarity=0.140  Sum_probs=55.2

Q ss_pred             CCCCCeeEEEECCC--CCeEEEEeCCCeEEEEEcCCCce--------------eccCCCcEEEEEecCCcceeeeeeecc
Q 036317           10 GDVSDANEVKLSND--GRLMLLTTLEGHIHVLHSFQGTL--------------PVSHNSTLEASFSQHLSLVALSVLILR   73 (106)
Q Consensus        10 ~~~~~v~~v~~spd--g~~l~~~~~~~~i~l~d~~~~~~--------------~~~~~~~~~~~fs~d~~~~~~~~~~~~   73 (106)
                      +|...|.+++|=|.  .+.++++..|+.|+++|+..-+.              ..+..++..++-.|++          .
T Consensus        91 gHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~----------P  160 (758)
T KOG1310|consen   91 GHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNG----------P  160 (758)
T ss_pred             ccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCC----------C
Confidence            66678999999884  66778889999999999875332              1233344445555665          4


Q ss_pred             cEEEEecCCCcEEEEECCCC
Q 036317           74 SWVLEGSGDGSVYAWSARSG   93 (106)
Q Consensus        74 ~~i~t~s~d~~i~~wd~~~~   93 (106)
                      ..+.++++||+|+.+|++..
T Consensus       161 htfwsasEDGtirQyDiREp  180 (758)
T KOG1310|consen  161 HTFWSASEDGTIRQYDIREP  180 (758)
T ss_pred             ceEEEecCCcceeeecccCC
Confidence            67889999999999999974

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=97.53  E-value=0.00045  Score=53.29  Aligned_cols=71  Identities=13%  Similarity=0.154  Sum_probs=54.4

Q ss_pred             CeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce-----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEE
Q 036317           14 DANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL-----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAW   88 (106)
Q Consensus        14 ~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~-----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~w   88 (106)
                      .|++++|+.||-.+++++.+|.+.|+|+.+.+.     ....-++..+.|-+.+         -...|++.. ...++||
T Consensus       230 svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~---------~q~~v~S~D-k~~~kiW  299 (703)
T KOG2321|consen  230 SVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTD---------QQNKVVSMD-KRILKIW  299 (703)
T ss_pred             cceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccC---------CCceEEecc-hHHhhhc
Confidence            599999999999999999999999999988776     2233345567776542         004565553 4589999


Q ss_pred             ECCCCC
Q 036317           89 SARSGK   94 (106)
Q Consensus        89 d~~~~~   94 (106)
                      |-.+|+
T Consensus       300 d~~~Gk  305 (703)
T KOG2321|consen  300 DECTGK  305 (703)
T ss_pred             ccccCC
Confidence            999998

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=97.50  E-value=0.00058  Score=52.86  Aligned_cols=75  Identities=11%  Similarity=0.080  Sum_probs=58.8

Q ss_pred             CCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcC-CCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCc
Q 036317           10 GDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSF-QGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGS   84 (106)
Q Consensus        10 ~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~-~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~   84 (106)
                      .+.+.|+.+.++|=+..+..++.|-+++||.-. ....    ..+...+.+++|||..          ...++++..||.
T Consensus       396 ~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptr----------pavF~~~d~~G~  465 (555)
T KOG1587|consen  396 THIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTR----------PAVFATVDGDGN  465 (555)
T ss_pred             ccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcC----------ceEEEEEcCCCc
Confidence            445799999999988877777779999999976 3333    2344557889999987          356788899999


Q ss_pred             EEEEECCCCC
Q 036317           85 VYAWSARSGK   94 (106)
Q Consensus        85 i~~wd~~~~~   94 (106)
                      +.+||+....
T Consensus       466 l~iWDLl~~~  475 (555)
T KOG1587|consen  466 LDIWDLLQDD  475 (555)
T ss_pred             eehhhhhccc
Confidence            9999998544

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.47  E-value=0.001  Score=49.06  Aligned_cols=80  Identities=11%  Similarity=0.171  Sum_probs=67.3

Q ss_pred             CeeEEEECCC--CCeEEEEeCCCeEEEEEcCCCce-----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEE
Q 036317           14 DANEVKLSND--GRLMLLTTLEGHIHVLHSFQGTL-----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVY   86 (106)
Q Consensus        14 ~v~~v~~spd--g~~l~~~~~~~~i~l~d~~~~~~-----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~   86 (106)
                      .++++.|-+.  ...+++++.-+++++||...++-     .....++.+....|++           .+|.+|..-+.+.
T Consensus       204 W~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~g-----------n~Iy~gn~~g~l~  272 (412)
T KOG3881|consen  204 WITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSG-----------NFIYTGNTKGQLA  272 (412)
T ss_pred             eeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCC-----------cEEEEecccchhh
Confidence            5678889877  88899999999999999987765     2244566778899999           9999999999999


Q ss_pred             EEECCCCC-----------CCcEEEeCCC
Q 036317           87 AWSARSGK-----------EPPVIKWAPG  104 (106)
Q Consensus        87 ~wd~~~~~-----------~v~~i~~sp~  104 (106)
                      .+|++.++           .|++|--+|+
T Consensus       273 ~FD~r~~kl~g~~~kg~tGsirsih~hp~  301 (412)
T KOG3881|consen  273 KFDLRGGKLLGCGLKGITGSIRSIHCHPT  301 (412)
T ss_pred             eecccCceeeccccCCccCCcceEEEcCC
Confidence            99999987           6677776665

>PRK04043 tolB translocation protein TolB; Provisional

Probab=97.47  E-value=0.0034  Score=47.01  Aligned_cols=73  Identities=14%  Similarity=0.162  Sum_probs=48.3

Q ss_pred             CeeEEEECCCCCe-EEEEeC---CCeEEEEEcCCCce---eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEE
Q 036317           14 DANEVKLSNDGRL-MLLTTL---EGHIHVLHSFQGTL---PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVY   86 (106)
Q Consensus        14 ~v~~v~~spdg~~-l~~~~~---~~~i~l~d~~~~~~---~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~   86 (106)
                      ....-.|||||+. ++..+.   +..++++|+.+++.   ....+......|||||+.+++....        ..+..|+
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~--------~g~~~Iy  260 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAP--------KGQPDIY  260 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEcc--------CCCcEEE
Confidence            5668899999985 554433   36789999988876   2233444567899999333332211        2245788


Q ss_pred             EEECCCCC
Q 036317           87 AWSARSGK   94 (106)
Q Consensus        87 ~wd~~~~~   94 (106)
                      ++|+.+++
T Consensus       261 ~~dl~~g~  268 (419)
T PRK04043        261 LYDTNTKT  268 (419)
T ss_pred             EEECCCCc
Confidence            88988776

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=97.46  E-value=0.00041  Score=52.50  Aligned_cols=78  Identities=15%  Similarity=0.105  Sum_probs=61.3

Q ss_pred             eecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce-----eccCCCcEEEEEecCCcceeeeeeecccEEEEec
Q 036317            6 FSDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL-----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGS   80 (106)
Q Consensus         6 ~~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~-----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s   80 (106)
                      .++..|++-|+.|.|...|..+++++.|.++.+||+..++.     .+|...+-...|-|..        . .+.|++.+
T Consensus       136 ~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s--------~-d~ti~~~s  206 (559)
T KOG1334|consen  136 KKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFS--------G-DRTIVTSS  206 (559)
T ss_pred             hcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCC--------C-CcCceecc
Confidence            45678889999999999999999999999999999988876     2343444445566542        0 17899999


Q ss_pred             CCCcEEEEECCC
Q 036317           81 GDGSVYAWSARS   92 (106)
Q Consensus        81 ~d~~i~~wd~~~   92 (106)
                      +||.+++=.+..
T Consensus       207 ~dgqvr~s~i~~  218 (559)
T KOG1334|consen  207 RDGQVRVSEILE  218 (559)
T ss_pred             ccCceeeeeecc
Confidence            999999987764

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=97.46  E-value=0.00022  Score=50.36  Aligned_cols=69  Identities=14%  Similarity=0.221  Sum_probs=56.7

Q ss_pred             CeeEEEECCCCCeE-EEEeCCCeEEEEEcCCCce-----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEE
Q 036317           14 DANEVKLSNDGRLM-LLTTLEGHIHVLHSFQGTL-----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYA   87 (106)
Q Consensus        14 ~v~~v~~spdg~~l-~~~~~~~~i~l~d~~~~~~-----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~   87 (106)
                      .|.+++-+|..+.+ ++++.+|.+-+||......     ..++..+..+.|+|..          ...+.++++||++-.
T Consensus       181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~----------p~~Lft~sedGslw~  250 (319)
T KOG4714|consen  181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKN----------PEHLFTCSEDGSLWH  250 (319)
T ss_pred             cchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCC----------chheeEecCCCcEEE
Confidence            58888889976655 5778899999999987755     4466777889999875          378999999999999


Q ss_pred             EECCC
Q 036317           88 WSARS   92 (106)
Q Consensus        88 wd~~~   92 (106)
                      ||..+
T Consensus       251 wdas~  255 (319)
T KOG4714|consen  251 WDAST  255 (319)
T ss_pred             EcCCC
Confidence            99874

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=97.44  E-value=0.0033  Score=45.67  Aligned_cols=80  Identities=19%  Similarity=0.350  Sum_probs=54.5

Q ss_pred             CeeEEEECCCCCeEEEEe-CCCeEEEEEcC--CCce---------ec-c--CCCcEEEEEecCCcceeeeeeecccEEEE
Q 036317           14 DANEVKLSNDGRLMLLTT-LEGHIHVLHSF--QGTL---------PV-S--HNSTLEASFSQHLSLVALSVLILRSWVLE   78 (106)
Q Consensus        14 ~v~~v~~spdg~~l~~~~-~~~~i~l~d~~--~~~~---------~~-~--~~~~~~~~fs~d~~~~~~~~~~~~~~i~t   78 (106)
                      .-+.+.|+|||+++.+.. .+++|.+++..  ++.+         +. .  ......+.++|||           ++|..
T Consensus       193 GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg-----------~~lyv  261 (345)
T PF10282_consen  193 GPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDG-----------RFLYV  261 (345)
T ss_dssp             SEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTS-----------SEEEE
T ss_pred             CCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCC-----------CEEEE
Confidence            578999999999886665 67889999887  5544         11 1  1245578999999           88766


Q ss_pred             ecC-CCcEEEEECC--CCC------------CCcEEEeCCC
Q 036317           79 GSG-DGSVYAWSAR--SGK------------EPPVIKWAPG  104 (106)
Q Consensus        79 ~s~-d~~i~~wd~~--~~~------------~v~~i~~sp~  104 (106)
                      +.. +.+|.++++.  +|+            .++.+.++|+
T Consensus       262 snr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~  302 (345)
T PF10282_consen  262 SNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPD  302 (345)
T ss_dssp             EECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TT
T ss_pred             EeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCC
Confidence            654 5689999983  344            4677777664

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=97.40  E-value=0.0023  Score=45.46  Aligned_cols=66  Identities=15%  Similarity=0.256  Sum_probs=50.0

Q ss_pred             EEEECCCCCeEEEEeCCCeEEEEEcCCCce--------eccCCCc-EEEEEecCCcceeeeeeecccEEEEecCCCcEEE
Q 036317           17 EVKLSNDGRLMLLTTLEGHIHVLHSFQGTL--------PVSHNST-LEASFSQHLSLVALSVLILRSWVLEGSGDGSVYA   87 (106)
Q Consensus        17 ~v~~spdg~~l~~~~~~~~i~l~d~~~~~~--------~~~~~~~-~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~   87 (106)
                      .++.++||+ +++..+|..|.|-.+.+.-.        +....+. ..++||||+           ..+|.+...|+|++
T Consensus         2 ~~~~~~~Gk-~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~-----------tlLa~a~S~G~i~v   69 (282)
T PF15492_consen    2 HLALSSDGK-LLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDC-----------TLLAYAESTGTIRV   69 (282)
T ss_pred             ceeecCCCc-EEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCC-----------cEEEEEcCCCeEEE
Confidence            367889999 56667888888877665432        3334444 469999999           99999999999999


Q ss_pred             EECCCCC
Q 036317           88 WSARSGK   94 (106)
Q Consensus        88 wd~~~~~   94 (106)
                      +|+...+
T Consensus        70 fdl~g~~   76 (282)
T PF15492_consen   70 FDLMGSE   76 (282)
T ss_pred             Eecccce
Confidence            9998543

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=97.36  E-value=0.0018  Score=51.52  Aligned_cols=89  Identities=11%  Similarity=0.119  Sum_probs=71.8

Q ss_pred             eeeecCCCC-CCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce-------------------eccCCCcEEEEEecCCc
Q 036317            4 DIFSDGGDV-SDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL-------------------PVSHNSTLEASFSQHLS   63 (106)
Q Consensus         4 ~~~~~~~~~-~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~-------------------~~~~~~~~~~~fs~d~~   63 (106)
                      -.+++..+. ....+++|+....|+++++.||.+++.-+.+...                   .+|.+++.-+.|..+. 
T Consensus         5 lskki~iPnnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~-   83 (1189)
T KOG2041|consen    5 LSKKIGIPNNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENN-   83 (1189)
T ss_pred             eecccCCCCCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecccc-
Confidence            345554433 4899999999999999999999999987654432                   3466778889999888 


Q ss_pred             ceeeeeeecccEEEEecCCCcEEEEECCCCC------------CCcEEEeCC
Q 036317           64 LVALSVLILRSWVLEGSGDGSVYAWSARSGK------------EPPVIKWAP  103 (106)
Q Consensus        64 ~~~~~~~~~~~~i~t~s~d~~i~~wd~~~~~------------~v~~i~~sp  103 (106)
                                +.+-|++.+|-|.+|=+..|+            .|.+++|+.
T Consensus        84 ----------QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~  125 (1189)
T KOG2041|consen   84 ----------QKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNL  125 (1189)
T ss_pred             ----------ccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcC
Confidence                      889999999999999998887            677888864

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=97.35  E-value=0.0022  Score=53.05  Aligned_cols=69  Identities=9%  Similarity=0.129  Sum_probs=56.6

Q ss_pred             eeEEEECCCCCeEEEEeCCCeEEEEEcCCCcee-----c------------cCCCcEEEEEecCCcceeeeeeecccEEE
Q 036317           15 ANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTLP-----V------------SHNSTLEASFSQHLSLVALSVLILRSWVL   77 (106)
Q Consensus        15 v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~~-----~------------~~~~~~~~~fs~d~~~~~~~~~~~~~~i~   77 (106)
                      -..++++++|+.+++-..++.|++||..++.+.     +            ....+..++++++|           +.++
T Consensus       806 P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG-----------~lyV  874 (1057)
T PLN02919        806 PLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENG-----------RLFV  874 (1057)
T ss_pred             CceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCC-----------CEEE
Confidence            458999999998888889999999999877651     1            11245678999999           9888


Q ss_pred             EecCCCcEEEEECCCCC
Q 036317           78 EGSGDGSVYAWSARSGK   94 (106)
Q Consensus        78 t~s~d~~i~~wd~~~~~   94 (106)
                      +-..++.|++||+++++
T Consensus       875 aDt~Nn~Irvid~~~~~  891 (1057)
T PLN02919        875 ADTNNSLIRYLDLNKGE  891 (1057)
T ss_pred             EECCCCEEEEEECCCCc
Confidence            88889999999999876

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=97.35  E-value=0.0005  Score=50.26  Aligned_cols=73  Identities=15%  Similarity=0.186  Sum_probs=53.3

Q ss_pred             CCCCeeEEEECC-CCCeEEEEeCCCeEEEEEcCCCce-------eccCCC--cEEEEEecCCcceeeeeeecccEEEEec
Q 036317           11 DVSDANEVKLSN-DGRLMLLTTLEGHIHVLHSFQGTL-------PVSHNS--TLEASFSQHLSLVALSVLILRSWVLEGS   80 (106)
Q Consensus        11 ~~~~v~~v~~sp-dg~~l~~~~~~~~i~l~d~~~~~~-------~~~~~~--~~~~~fs~d~~~~~~~~~~~~~~i~t~s   80 (106)
                      |.+.|++++.=. ++++++++.+++.|.+||..--+.       .+|.+.  ...+...+..           ..|++++
T Consensus       297 h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~ee-----------g~I~s~G  365 (425)
T KOG2695|consen  297 HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEE-----------GSIFSVG  365 (425)
T ss_pred             cCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeeccccccccccccccccc-----------ceEEEcc
Confidence            345677776654 788999999999999999753221       222221  2235556777           8999999


Q ss_pred             CCCcEEEEECCCCC
Q 036317           81 GDGSVYAWSARSGK   94 (106)
Q Consensus        81 ~d~~i~~wd~~~~~   94 (106)
                      .|...++|.+++|.
T Consensus       366 dDcytRiWsl~~gh  379 (425)
T KOG2695|consen  366 DDCYTRIWSLDSGH  379 (425)
T ss_pred             CeeEEEEEecccCc
Confidence            99999999999887

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=97.32  E-value=0.0014  Score=47.96  Aligned_cols=69  Identities=23%  Similarity=0.379  Sum_probs=52.6

Q ss_pred             CeeEEEECCCCCeEEEEeCCCeEEEEEc-CCCce----ec-----------c-CCCc---EEEEEecCCcceeeeeeecc
Q 036317           14 DANEVKLSNDGRLMLLTTLEGHIHVLHS-FQGTL----PV-----------S-HNST---LEASFSQHLSLVALSVLILR   73 (106)
Q Consensus        14 ~v~~v~~spdg~~l~~~~~~~~i~l~d~-~~~~~----~~-----------~-~~~~---~~~~fs~d~~~~~~~~~~~~   73 (106)
                      .|++++|++.|+|+++-. --++++||+ +..+.    +.           . ...+   -.|+|+-++           
T Consensus       274 SISDvKFs~sGryilsRD-yltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~-----------  341 (433)
T KOG1354|consen  274 SISDVKFSHSGRYILSRD-YLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGND-----------  341 (433)
T ss_pred             hhhceEEccCCcEEEEec-cceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCc-----------
Confidence            788999999999888743 368999998 44443    11           1 1112   248899998           


Q ss_pred             cEEEEecCCCcEEEEECCCCC
Q 036317           74 SWVLEGSGDGSVYAWSARSGK   94 (106)
Q Consensus        74 ~~i~t~s~d~~i~~wd~~~~~   94 (106)
                      .+++||+.+...+++++..|.
T Consensus       342 ~~v~TGsy~n~frvf~~~~gs  362 (433)
T KOG1354|consen  342 SYVMTGSYNNVFRVFNLARGS  362 (433)
T ss_pred             ceEecccccceEEEecCCCCc
Confidence            999999999999999977665

>smart00320 WD40 WD40 repeats

Probab=97.31  E-value=0.00056  Score=31.63  Aligned_cols=30  Identities=20%  Similarity=0.451  Sum_probs=25.9

Q ss_pred             cCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEEE
Q 036317           49 SHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWS   89 (106)
Q Consensus        49 ~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd   89 (106)
                      +...+..+.|.+++           .++++++.|+.+++|+
T Consensus        11 ~~~~i~~~~~~~~~-----------~~~~~~~~d~~~~~~~   40 (40)
T smart00320       11 HTGPVTSVAFSPDG-----------KYLASASDDGTIKLWD   40 (40)
T ss_pred             cCCceeEEEECCCC-----------CEEEEecCCCeEEEcC
Confidence            44566788999999           9999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=97.30  E-value=0.00078  Score=49.20  Aligned_cols=78  Identities=13%  Similarity=0.199  Sum_probs=61.1

Q ss_pred             eecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce-----eccCCCcEEEEEecCCcceeeeeeecccEEEEec
Q 036317            6 FSDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL-----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGS   80 (106)
Q Consensus         6 ~~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~-----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s   80 (106)
                      .++.++.+.+.+++|+|..+.+.++..|..+-+||+--++.     .++.+.+..+..-+--           +.+.+++
T Consensus       191 ~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t-----------~~l~S~~  259 (404)
T KOG1409|consen  191 TTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHT-----------RQLISCG  259 (404)
T ss_pred             EEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhh-----------eeeeecc
Confidence            44567788999999999999999999999999999854443     3344445445555566           8889999


Q ss_pred             CCCcEEEEECCCCC
Q 036317           81 GDGSVYAWSARSGK   94 (106)
Q Consensus        81 ~d~~i~~wd~~~~~   94 (106)
                      +||.|.+||+....
T Consensus       260 edg~i~~w~mn~~r  273 (404)
T KOG1409|consen  260 EDGGIVVWNMNVKR  273 (404)
T ss_pred             CCCeEEEEecccee
Confidence            99999999997543

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=97.23  E-value=0.0031  Score=48.69  Aligned_cols=81  Identities=16%  Similarity=0.204  Sum_probs=55.2

Q ss_pred             CCeeEEEECCCCCeEEEEeC-----------CCeEEEEEcCCCcee----c--cCCCc-EEEEEecCCcceeeeeeeccc
Q 036317           13 SDANEVKLSNDGRLMLLTTL-----------EGHIHVLHSFQGTLP----V--SHNST-LEASFSQHLSLVALSVLILRS   74 (106)
Q Consensus        13 ~~v~~v~~spdg~~l~~~~~-----------~~~i~l~d~~~~~~~----~--~~~~~-~~~~fs~d~~~~~~~~~~~~~   74 (106)
                      -.|..++|||..+||++=+.           .+.+.|||+.+|...    .  ..... .-..||.|+           +
T Consensus       250 p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~Dd-----------K  318 (698)
T KOG2314|consen  250 PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDD-----------K  318 (698)
T ss_pred             CCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCC-----------c
Confidence            37889999999999987642           278899999999881    1  11111 237899999           5


Q ss_pred             EEEEecCCCcEEEEECCC--------CC--CCcEEEeCCCC
Q 036317           75 WVLEGSGDGSVYAWSARS--------GK--EPPVIKWAPGS  105 (106)
Q Consensus        75 ~i~t~s~d~~i~~wd~~~--------~~--~v~~i~~sp~~  105 (106)
                      |+|.-..| +|.|++..+        -+  .|+...|+|..
T Consensus       319 y~Arm~~~-sisIyEtpsf~lld~Kslki~gIr~FswsP~~  358 (698)
T KOG2314|consen  319 YFARMTGN-SISIYETPSFMLLDKKSLKISGIRDFSWSPTS  358 (698)
T ss_pred             eeEEeccc-eEEEEecCceeeecccccCCccccCcccCCCc
Confidence            55544333 566665543        22  77888888864

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=97.21  E-value=0.0044  Score=45.62  Aligned_cols=68  Identities=9%  Similarity=-0.031  Sum_probs=51.5

Q ss_pred             EECCCCCeEEEEeC----------CCeEEEEEcCCCce----ec-c------CCCcEEEEEecCCcceeeeeeecccEEE
Q 036317           19 KLSNDGRLMLLTTL----------EGHIHVLHSFQGTL----PV-S------HNSTLEASFSQHLSLVALSVLILRSWVL   77 (106)
Q Consensus        19 ~~spdg~~l~~~~~----------~~~i~l~d~~~~~~----~~-~------~~~~~~~~fs~d~~~~~~~~~~~~~~i~   77 (106)
                      .+||||+.+.++..          ++.|.+||..+.+.    +. .      -.......+||||           +++.
T Consensus        52 ~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dg-----------k~l~  120 (352)
T TIGR02658        52 VVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDN-----------KTLL  120 (352)
T ss_pred             eECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCC-----------CEEE
Confidence            49999999977655          78999999999887    11 1      1122358999999           8888


Q ss_pred             EecC--CCcEEEEECCCCCCCc
Q 036317           78 EGSG--DGSVYAWSARSGKEPP   97 (106)
Q Consensus        78 t~s~--d~~i~~wd~~~~~~v~   97 (106)
                      ....  +..|.+.|+++++.+.
T Consensus       121 V~n~~p~~~V~VvD~~~~kvv~  142 (352)
T TIGR02658       121 FYQFSPSPAVGVVDLEGKAFVR  142 (352)
T ss_pred             EecCCCCCEEEEEECCCCcEEE
Confidence            6653  6799999999998433

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.21  E-value=0.0028  Score=33.36  Aligned_cols=30  Identities=20%  Similarity=0.171  Sum_probs=27.8

Q ss_pred             CCCeeEEEECCCCCeEEEEeCCCeEEEEEc
Q 036317           12 VSDANEVKLSNDGRLMLLTTLEGHIHVLHS   41 (106)
Q Consensus        12 ~~~v~~v~~spdg~~l~~~~~~~~i~l~d~   41 (106)
                      ..+|..++|+|....+|.++.+|++.++..
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl   40 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL   40 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC
Confidence            358999999999999999999999999987

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=96.98  E-value=0.023  Score=41.62  Aligned_cols=80  Identities=19%  Similarity=0.342  Sum_probs=58.7

Q ss_pred             CeeEEEECCCCCeEEEEe-CCCeEEEEEcCC-Cce------ecc----------CCCcEEEEEecCCcceeeeeeecccE
Q 036317           14 DANEVKLSNDGRLMLLTT-LEGHIHVLHSFQ-GTL------PVS----------HNSTLEASFSQHLSLVALSVLILRSW   75 (106)
Q Consensus        14 ~v~~v~~spdg~~l~~~~-~~~~i~l~d~~~-~~~------~~~----------~~~~~~~~fs~d~~~~~~~~~~~~~~   75 (106)
                      .-..++++++|++++++. ..+.|.++-+.. |.+      ..+          +..+=.+.|.|++           ++
T Consensus        90 ~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~-----------~~  158 (346)
T COG2706          90 PPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDG-----------RY  158 (346)
T ss_pred             CCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCC-----------CE
Confidence            447999999999998887 558888887743 554      001          1113347899999           99


Q ss_pred             EEEecCC-CcEEEEECCCCC-------------CCcEEEeCCC
Q 036317           76 VLEGSGD-GSVYAWSARSGK-------------EPPVIKWAPG  104 (106)
Q Consensus        76 i~t~s~d-~~i~~wd~~~~~-------------~v~~i~~sp~  104 (106)
                      |++.+-. ..|.++++++|+             ..+-|.|+|+
T Consensus       159 l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn  201 (346)
T COG2706         159 LVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPN  201 (346)
T ss_pred             EEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCC
Confidence            8888653 389999999887             6678888886

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=96.97  E-value=0.023  Score=40.63  Aligned_cols=79  Identities=13%  Similarity=0.031  Sum_probs=55.7

Q ss_pred             eeEEEECCCCCeEEEEeCCCeEEEEEcCCCce---------eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcE
Q 036317           15 ANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL---------PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSV   85 (106)
Q Consensus        15 v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~---------~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i   85 (106)
                      =.+..|+.....+|++.+|+++.|||+.....         +.+.+.+..|.|++.|        ++ ..+.-.-.-+.+
T Consensus       206 gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g--------~l-DLLf~sEhfs~~  276 (344)
T KOG4532|consen  206 GFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYG--------LL-DLLFISEHFSRV  276 (344)
T ss_pred             ceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCC--------cc-eEEEEecCcceE
Confidence            34677888888899999999999999876443         3456777789999877        11 223333334689


Q ss_pred             EEEECCCCCCCcEEEeC
Q 036317           86 YAWSARSGKEPPVIKWA  102 (106)
Q Consensus        86 ~~wd~~~~~~v~~i~~s  102 (106)
                      .+.|+++++.++.|...
T Consensus       277 hv~D~R~~~~~q~I~i~  293 (344)
T KOG4532|consen  277 HVVDTRNYVNHQVIVIP  293 (344)
T ss_pred             EEEEcccCceeeEEecC
Confidence            99999998855444433

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=96.96  E-value=0.006  Score=50.76  Aligned_cols=70  Identities=13%  Similarity=0.068  Sum_probs=50.1

Q ss_pred             CCCeeEEEECC-CCCeEEEEeCCCeEEEEEcCCCcee-----------ccCCCcEEEEEecCCcceeeeeeecccEEEEe
Q 036317           12 VSDANEVKLSN-DGRLMLLTTLEGHIHVLHSFQGTLP-----------VSHNSTLEASFSQHLSLVALSVLILRSWVLEG   79 (106)
Q Consensus        12 ~~~v~~v~~sp-dg~~l~~~~~~~~i~l~d~~~~~~~-----------~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~   79 (106)
                      ...+..++.++ ++.++++++.||+|++||...-...           ...+++..+.+.+.+           ..+|.+
T Consensus      1048 s~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~-----------~~~Av~ 1116 (1431)
T KOG1240|consen 1048 SSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNG-----------DQFAVS 1116 (1431)
T ss_pred             cccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCC-----------CeEEEE
Confidence            44666777765 5599999999999999997543221           012233344445555           899999


Q ss_pred             cCCCcEEEEECCC
Q 036317           80 SGDGSVYAWSARS   92 (106)
Q Consensus        80 s~d~~i~~wd~~~   92 (106)
                      +.||.|.+.++..
T Consensus      1117 t~DG~v~~~~id~ 1129 (1431)
T KOG1240|consen 1117 TKDGSVRVLRIDH 1129 (1431)
T ss_pred             cCCCeEEEEEccc
Confidence            9999999999886

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=96.94  E-value=0.0035  Score=49.33  Aligned_cols=81  Identities=12%  Similarity=0.205  Sum_probs=67.4

Q ss_pred             CCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce---ec--cCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEE
Q 036317           13 SDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL---PV--SHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYA   87 (106)
Q Consensus        13 ~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~---~~--~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~   87 (106)
                      ..|.--.++..+++++.++..|.+++++-..++.   ++  .++.++.++.|++.           .++|.|+..|.|.+
T Consensus        34 ~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e-----------~lvAagt~~g~V~v  102 (726)
T KOG3621|consen   34 ARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVE-----------YLVAAGTASGRVSV  102 (726)
T ss_pred             ceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchh-----------HhhhhhcCCceEEe
Confidence            3677778889999999999999999999877766   22  34455678899999           99999999999999


Q ss_pred             EECCCCC----------------CCcEEEeCCC
Q 036317           88 WSARSGK----------------EPPVIKWAPG  104 (106)
Q Consensus        88 wd~~~~~----------------~v~~i~~sp~  104 (106)
                      +.+..+.                .|.++.|+++
T Consensus       103 ~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~  135 (726)
T KOG3621|consen  103 FQLNKELPRDLDYVTPCDKSHKCRVTALEWSKN  135 (726)
T ss_pred             ehhhccCCCcceeeccccccCCceEEEEEeccc
Confidence            9888754                6888999886

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=96.94  E-value=0.0046  Score=47.15  Aligned_cols=79  Identities=20%  Similarity=0.330  Sum_probs=55.7

Q ss_pred             CeeEEEECCCCCeEEEEeCC---CeEEEEEcCCCce-e-ccCC-CcEEEEEecCCcceeeeeeecccEEEEe------cC
Q 036317           14 DANEVKLSNDGRLMLLTTLE---GHIHVLHSFQGTL-P-VSHN-STLEASFSQHLSLVALSVLILRSWVLEG------SG   81 (106)
Q Consensus        14 ~v~~v~~spdg~~l~~~~~~---~~i~l~d~~~~~~-~-~~~~-~~~~~~fs~d~~~~~~~~~~~~~~i~t~------s~   81 (106)
                      .=+.+-|||.+++++.++.+   +.+.+||...... - .-.+ ....|.|+||+           +|+.+.      -.
T Consensus       317 ~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n~s~~~wspd~-----------qF~~~~~ts~k~~~  385 (561)
T COG5354         317 KRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLNTSYCDWSPDG-----------QFYDTDTTSEKLRV  385 (561)
T ss_pred             ccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCCceEeeccCCc-----------eEEEecCCCccccc
Confidence            34567899999999998876   6788999866554 1 1111 23448999999           776655      34


Q ss_pred             CCcEEEEECCCCC--CCcEEEeCC
Q 036317           82 DGSVYAWSARSGK--EPPVIKWAP  103 (106)
Q Consensus        82 d~~i~~wd~~~~~--~v~~i~~sp  103 (106)
                      |..|+|||+....  ....+.|.|
T Consensus       386 Dn~i~l~~v~g~~~fel~~~~W~p  409 (561)
T COG5354         386 DNSIKLWDVYGAKVFELTNITWDP  409 (561)
T ss_pred             CcceEEEEecCchhhhhhhccccC
Confidence            7899999997554  555666665

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=96.88  E-value=0.018  Score=44.45  Aligned_cols=45  Identities=22%  Similarity=0.425  Sum_probs=39.1

Q ss_pred             CCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEEECCCCC--------CCcEEEeCCCC
Q 036317           50 HNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSARSGK--------EPPVIKWAPGS  105 (106)
Q Consensus        50 ~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd~~~~~--------~v~~i~~sp~~  105 (106)
                      ...+..++++|+.           ..++.|++||+|.+||...+.        .+..++|+|+.
T Consensus       259 ~s~v~~ca~sp~E-----------~kLvlGC~DgSiiLyD~~~~~t~~~ka~~~P~~iaWHp~g  311 (545)
T PF11768_consen  259 PSQVICCARSPSE-----------DKLVLGCEDGSIILYDTTRGVTLLAKAEFIPTLIAWHPDG  311 (545)
T ss_pred             CCcceEEecCccc-----------ceEEEEecCCeEEEEEcCCCeeeeeeecccceEEEEcCCC
Confidence            4466789999999           999999999999999998775        78889999873

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=96.87  E-value=0.0024  Score=51.90  Aligned_cols=91  Identities=16%  Similarity=0.224  Sum_probs=66.3

Q ss_pred             Cceeeec-CCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEE
Q 036317            2 PFDIFSD-GGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWV   76 (106)
Q Consensus         2 ~~~~~~~-~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i   76 (106)
                      +|..|+. ..+....++++|+-+.+++++++..|+++++++.+|..    ..|...++.+.=+.||           ...
T Consensus      1090 RFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dg-----------s~~ 1158 (1516)
T KOG1832|consen 1090 RFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDG-----------STQ 1158 (1516)
T ss_pred             hcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCc-----------cee
Confidence            3555555 33345899999999999999999999999999999877    3455556667678888           766


Q ss_pred             EEecCCC--cEEEEECCC-CC------CCcEEEeCC
Q 036317           77 LEGSGDG--SVYAWSARS-GK------EPPVIKWAP  103 (106)
Q Consensus        77 ~t~s~d~--~i~~wd~~~-~~------~v~~i~~sp  103 (106)
                      ++.+.-.  -..+|++.+ +.      .-.+++|+.
T Consensus      1159 Ltsss~S~PlsaLW~~~s~~~~~Hsf~ed~~vkFsn 1194 (1516)
T KOG1832|consen 1159 LTSSSSSSPLSALWDASSTGGPRHSFDEDKAVKFSN 1194 (1516)
T ss_pred             eeeccccCchHHHhccccccCccccccccceeehhh
Confidence            6665433  478898875 22      456666654

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.84  E-value=0.0048  Score=44.92  Aligned_cols=62  Identities=19%  Similarity=0.313  Sum_probs=44.6

Q ss_pred             CCCCCeEEEEeC---------CCeEEEEEcCCCcee---ccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEE
Q 036317           21 SNDGRLMLLTTL---------EGHIHVLHSFQGTLP---VSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAW   88 (106)
Q Consensus        21 spdg~~l~~~~~---------~~~i~l~d~~~~~~~---~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~w   88 (106)
                      |||+++++...+         .+...++|+.+++..   ........+.|||||           +.|+... ++.++++
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g-----------~~~~~v~-~~nly~~   68 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPPPPKLQDAKWSPDG-----------KYIAFVR-DNNLYLR   68 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-EETTBSEEEE-SSS-----------TEEEEEE-TTEEEEE
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCCccccccceeecCC-----------CeeEEEe-cCceEEE
Confidence            799999988542         356789999998871   123456679999999           8888774 4589998


Q ss_pred             ECCCCC
Q 036317           89 SARSGK   94 (106)
Q Consensus        89 d~~~~~   94 (106)
                      ++.+++
T Consensus        69 ~~~~~~   74 (353)
T PF00930_consen   69 DLATGQ   74 (353)
T ss_dssp             SSTTSE
T ss_pred             ECCCCC
Confidence            877664

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=96.82  E-value=0.033  Score=40.77  Aligned_cols=67  Identities=13%  Similarity=0.190  Sum_probs=51.9

Q ss_pred             eeEEEECCCCCeEEEEe-CCCeEEEEEcCCCce------eccC-CCcEEEEEecCCcceeeeeeecccEEEEecC-CCcE
Q 036317           15 ANEVKLSNDGRLMLLTT-LEGHIHVLHSFQGTL------PVSH-NSTLEASFSQHLSLVALSVLILRSWVLEGSG-DGSV   85 (106)
Q Consensus        15 v~~v~~spdg~~l~~~~-~~~~i~l~d~~~~~~------~~~~-~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~-d~~i   85 (106)
                      +....|+|||+++++.. ....|.+|+..+|.+      .... ..+..+.|+|++           +++....| +++|
T Consensus       147 ~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~-----------k~aY~v~EL~stV  215 (346)
T COG2706         147 VHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNG-----------KYAYLVNELNSTV  215 (346)
T ss_pred             cceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCC-----------cEEEEEeccCCEE
Confidence            78899999999887664 557899999998887      1111 234569999999           88766655 8899


Q ss_pred             EEEECCC
Q 036317           86 YAWSARS   92 (106)
Q Consensus        86 ~~wd~~~   92 (106)
                      .+|+...
T Consensus       216 ~v~~y~~  222 (346)
T COG2706         216 DVLEYNP  222 (346)
T ss_pred             EEEEEcC
Confidence            9999887

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=96.77  E-value=0.011  Score=49.22  Aligned_cols=72  Identities=11%  Similarity=0.124  Sum_probs=52.7

Q ss_pred             CCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce-----eccCCCcEEEEEe---cCCcceeeeeeecccEEE-Eec-C
Q 036317           12 VSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL-----PVSHNSTLEASFS---QHLSLVALSVLILRSWVL-EGS-G   81 (106)
Q Consensus        12 ~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~-----~~~~~~~~~~~fs---~d~~~~~~~~~~~~~~i~-t~s-~   81 (106)
                      +|.|++++.+|.+.++++|+..|.+.+||+.=+..     ..+..++..+..+   |..           ..++ +++ .
T Consensus      1195 hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~-----------S~~vs~~~~~ 1263 (1431)
T KOG1240|consen 1195 HGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQE-----------SVSVSAGSSS 1263 (1431)
T ss_pred             ccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCC-----------ceEEEecccC
Confidence            57899999999999999999999999999876655     1223344433333   333           3444 444 5


Q ss_pred             CCcEEEEECCCCC
Q 036317           82 DGSVYAWSARSGK   94 (106)
Q Consensus        82 d~~i~~wd~~~~~   94 (106)
                      .+.|.+|++++|.
T Consensus      1264 ~nevs~wn~~~g~ 1276 (1431)
T KOG1240|consen 1264 NNEVSTWNMETGL 1276 (1431)
T ss_pred             CCceeeeecccCc
Confidence            7899999999986

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=96.72  E-value=0.018  Score=41.53  Aligned_cols=68  Identities=25%  Similarity=0.372  Sum_probs=52.3

Q ss_pred             eeEEEECCCCCeEEEEeCCCeEEEEEcCCCce------eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEE
Q 036317           15 ANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL------PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAW   88 (106)
Q Consensus        15 v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~------~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~w   88 (106)
                      .-++.|++-|..++++-.++.+.+.+.....+      +.+.-....+.|+-..          ...+.+|++|+.+..|
T Consensus       124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~----------pnlvytGgDD~~l~~~  193 (339)
T KOG0280|consen  124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKE----------PNLVYTGGDDGSLSCW  193 (339)
T ss_pred             eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCC----------CceEEecCCCceEEEE
Confidence            34778889999999999999999777655554      3344445568888554          2678999999999999


Q ss_pred             ECCC
Q 036317           89 SARS   92 (106)
Q Consensus        89 d~~~   92 (106)
                      |++.
T Consensus       194 D~R~  197 (339)
T KOG0280|consen  194 DIRI  197 (339)
T ss_pred             EecC
Confidence            9993

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=96.70  E-value=0.0022  Score=55.16  Aligned_cols=68  Identities=13%  Similarity=0.245  Sum_probs=54.7

Q ss_pred             CCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCceeccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEEE
Q 036317           10 GDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTLPVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWS   89 (106)
Q Consensus        10 ~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd   89 (106)
                      -|.+.++.+++-|.-+.+++++.+|++++||+...++...-..     +. ..           .++++|+..|.++||+
T Consensus      2334 ~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~-----~~-~~-----------~~f~~~ss~g~ikIw~ 2396 (2439)
T KOG1064|consen 2334 CHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA-----LD-TR-----------EYFVTGSSEGNIKIWR 2396 (2439)
T ss_pred             ecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh-----hh-hh-----------heeeccCcccceEEEE
Confidence            4567899999999999999999999999999977776321111     23 34           7899999999999999


Q ss_pred             CCCCC
Q 036317           90 ARSGK   94 (106)
Q Consensus        90 ~~~~~   94 (106)
                      +..-.
T Consensus      2397 ~s~~~ 2401 (2439)
T KOG1064|consen 2397 LSEFG 2401 (2439)
T ss_pred             ccccc
Confidence            97654

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=96.69  E-value=0.011  Score=44.45  Aligned_cols=68  Identities=18%  Similarity=0.244  Sum_probs=43.8

Q ss_pred             eEEEECCCCCeEEEEeC-C--CeEEEEEcCCCcee---ccCCCcEEEEEecCCcceeeeeeecccEEEEec-CCC--cEE
Q 036317           16 NEVKLSNDGRLMLLTTL-E--GHIHVLHSFQGTLP---VSHNSTLEASFSQHLSLVALSVLILRSWVLEGS-GDG--SVY   86 (106)
Q Consensus        16 ~~v~~spdg~~l~~~~~-~--~~i~l~d~~~~~~~---~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s-~d~--~i~   86 (106)
                      ..-+|+|||++++.... +  -.|.+.|+..++.+   ...+.-...+|+|||           ++|+..+ ..|  .|+
T Consensus       241 ~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG-----------~~ivf~Sdr~G~p~I~  309 (425)
T COG0823         241 GAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDG-----------SKIVFTSDRGGRPQIY  309 (425)
T ss_pred             CCccCCCCCCEEEEEECCCCCccEEEEcCCCCcceecccCCccccCccCCCCC-----------CEEEEEeCCCCCcceE
Confidence            35679999999987653 3  35667788776662   222333468999999           7666553 344  566


Q ss_pred             EEECCCCC
Q 036317           87 AWSARSGK   94 (106)
Q Consensus        87 ~wd~~~~~   94 (106)
                      +.+++.++
T Consensus       310 ~~~~~g~~  317 (425)
T COG0823         310 LYDLEGSQ  317 (425)
T ss_pred             EECCCCCc
Confidence            66665443

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=96.63  E-value=0.01  Score=48.95  Aligned_cols=69  Identities=13%  Similarity=0.161  Sum_probs=51.9

Q ss_pred             CeeEEEECC-CCCeEEEEeCCCeEEEEEcCCCce-------eccCCC--cEEEEEecCCcceeeeeeecccEEEEecCCC
Q 036317           14 DANEVKLSN-DGRLMLLTTLEGHIHVLHSFQGTL-------PVSHNS--TLEASFSQHLSLVALSVLILRSWVLEGSGDG   83 (106)
Q Consensus        14 ~v~~v~~sp-dg~~l~~~~~~~~i~l~d~~~~~~-------~~~~~~--~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~   83 (106)
                      -|+++.-+. .|..+++|-.||.+++||......       ..+...  +..+++-+.|          ...|++|+.||
T Consensus      1210 ~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G----------~~elvSgs~~G 1279 (1387)
T KOG1517|consen 1210 LVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQG----------LGELVSGSQDG 1279 (1387)
T ss_pred             cceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCC----------CcceeeeccCC
Confidence            455555443 478899999999999999765433       333333  7788888877          13599999999


Q ss_pred             cEEEEECCC
Q 036317           84 SVYAWSARS   92 (106)
Q Consensus        84 ~i~~wd~~~   92 (106)
                      .|++||++.
T Consensus      1280 ~I~~~DlR~ 1288 (1387)
T KOG1517|consen 1280 DIQLLDLRM 1288 (1387)
T ss_pred             eEEEEeccc
Confidence            999999997

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=96.57  E-value=0.013  Score=30.31  Aligned_cols=31  Identities=19%  Similarity=0.413  Sum_probs=26.0

Q ss_pred             CCeeEEEECCC-C--CeEEEEeCCCeEEEEEcCC
Q 036317           13 SDANEVKLSND-G--RLMLLTTLEGHIHVLHSFQ   43 (106)
Q Consensus        13 ~~v~~v~~spd-g--~~l~~~~~~~~i~l~d~~~   43 (106)
                      +.|++++|||+ +  +.|+.+-..+.++|+|..+
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            46899999985 4  5888888889999999974

It contains a characteristic DLL sequence motif.

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=96.56  E-value=0.0044  Score=47.29  Aligned_cols=69  Identities=17%  Similarity=0.237  Sum_probs=52.5

Q ss_pred             CeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce--eccCCCcEEEEEecCCcceeeeeeecccEEEEecCC---------
Q 036317           14 DANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL--PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGD---------   82 (106)
Q Consensus        14 ~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~--~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d---------   82 (106)
                      ++..+.+||-|+++++....+ |.+|+......  ...+..+....|||.+           +|++|=+..         
T Consensus        34 p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~~~~~~~V~~~~fSP~~-----------kYL~tw~~~pi~~pe~e~  101 (561)
T COG5354          34 PVAYVSESPLGTYLFSEHAAG-VECWGGPSKAKLVRFRHPDVKYLDFSPNE-----------KYLVTWSREPIIEPEIEI  101 (561)
T ss_pred             chhheeecCcchheehhhccc-eEEccccchhheeeeecCCceecccCccc-----------ceeeeeccCCccChhhcc
Confidence            788999999999888766655 88888765433  4566677889999999           555554332         


Q ss_pred             ------CcEEEEECCCCC
Q 036317           83 ------GSVYAWSARSGK   94 (106)
Q Consensus        83 ------~~i~~wd~~~~~   94 (106)
                            ..+.+||..+|+
T Consensus       102 sp~~~~n~~~vwd~~sg~  119 (561)
T COG5354         102 SPFTSKNNVFVWDIASGM  119 (561)
T ss_pred             CCccccCceeEEeccCce
Confidence                  259999999998

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=96.53  E-value=0.013  Score=44.59  Aligned_cols=81  Identities=19%  Similarity=0.324  Sum_probs=58.5

Q ss_pred             CCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce-----------------eccCC--CcEEE-EEecCCcceeeeeee
Q 036317           12 VSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL-----------------PVSHN--STLEA-SFSQHLSLVALSVLI   71 (106)
Q Consensus        12 ~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~-----------------~~~~~--~~~~~-~fs~d~~~~~~~~~~   71 (106)
                      ...|++++|+-+|.-++++-+|-.|+++.-.-+..                 ++|.+  .+..+ =|.|..         
T Consensus       336 ~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrs---------  406 (559)
T KOG1334|consen  336 PVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRS---------  406 (559)
T ss_pred             cccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCcc---------
Confidence            34799999997777688888888899985332211                 12222  23333 467888         


Q ss_pred             cccEEEEecCCCcEEEEECCCCC----------CCcEEEeCC
Q 036317           72 LRSWVLEGSGDGSVYAWSARSGK----------EPPVIKWAP  103 (106)
Q Consensus        72 ~~~~i~t~s~d~~i~~wd~~~~~----------~v~~i~~sp  103 (106)
                        .||++||.-|.|.+|+-.+++          .|+||.=+|
T Consensus       407 --EyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP  446 (559)
T KOG1334|consen  407 --EYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHP  446 (559)
T ss_pred             --ceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCC
Confidence              999999999999999999988          666765544

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=96.53  E-value=0.026  Score=46.95  Aligned_cols=70  Identities=11%  Similarity=0.069  Sum_probs=52.1

Q ss_pred             CeeEEEECCCCCeEE-EEeCCCeEEEEEcCCCcee--c-----------------------cCCCcEEEEEecCCcceee
Q 036317           14 DANEVKLSNDGRLML-LTTLEGHIHVLHSFQGTLP--V-----------------------SHNSTLEASFSQHLSLVAL   67 (106)
Q Consensus        14 ~v~~v~~spdg~~l~-~~~~~~~i~l~d~~~~~~~--~-----------------------~~~~~~~~~fs~d~~~~~~   67 (106)
                      ..+.++++|||+.++ +-..++.|++||..++...  .                       ....+..++++++|     
T Consensus       741 ~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG-----  815 (1057)
T PLN02919        741 QPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDG-----  815 (1057)
T ss_pred             CccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCC-----
Confidence            456799999998554 5567799999998765420  0                       01134568899999     


Q ss_pred             eeeecccEEEEecCCCcEEEEECCCCC
Q 036317           68 SVLILRSWVLEGSGDGSVYAWSARSGK   94 (106)
Q Consensus        68 ~~~~~~~~i~t~s~d~~i~~wd~~~~~   94 (106)
                            +.+++-..++.|++||.+++.
T Consensus       816 ------~LYVADs~N~rIrviD~~tg~  836 (1057)
T PLN02919        816 ------QIYVADSYNHKIKKLDPATKR  836 (1057)
T ss_pred             ------cEEEEECCCCEEEEEECCCCe
Confidence                  888888899999999998764

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=96.52  E-value=0.011  Score=44.88  Aligned_cols=78  Identities=14%  Similarity=0.165  Sum_probs=63.9

Q ss_pred             cCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCC------Cce-------------eccCCCcEEEEEecCCcceeee
Q 036317            8 DGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQ------GTL-------------PVSHNSTLEASFSQHLSLVALS   68 (106)
Q Consensus         8 ~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~------~~~-------------~~~~~~~~~~~fs~d~~~~~~~   68 (106)
                      ..-|.++|..+.++|-+..+++....|.|.-|.+..      .++             +..++.+.++.|+|++      
T Consensus       140 kklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g------  213 (558)
T KOG0882|consen  140 KKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDG------  213 (558)
T ss_pred             cccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEcccc------
Confidence            345567999999999999999988899999999873      111             2234556779999999      


Q ss_pred             eeecccEEEEecCCCcEEEEECCCCCCC
Q 036317           69 VLILRSWVLEGSGDGSVYAWSARSGKEP   96 (106)
Q Consensus        69 ~~~~~~~i~t~s~d~~i~~wd~~~~~~v   96 (106)
                           ..+.+-++|..|++++.++|+.+
T Consensus       214 -----~qistl~~DrkVR~F~~KtGklv  236 (558)
T KOG0882|consen  214 -----AQISTLNPDRKVRGFVFKTGKLV  236 (558)
T ss_pred             -----CcccccCcccEEEEEEeccchhh
Confidence                 99999999999999999999833

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=96.50  E-value=0.004  Score=45.72  Aligned_cols=66  Identities=18%  Similarity=0.276  Sum_probs=48.5

Q ss_pred             CeeEEEECCCC-CeEEEEeCCCeEEEEEcCCCce-------------ecc-------CCCcEEEEEecCCcceeeeeeec
Q 036317           14 DANEVKLSNDG-RLMLLTTLEGHIHVLHSFQGTL-------------PVS-------HNSTLEASFSQHLSLVALSVLIL   72 (106)
Q Consensus        14 ~v~~v~~spdg-~~l~~~~~~~~i~l~d~~~~~~-------------~~~-------~~~~~~~~fs~d~~~~~~~~~~~   72 (106)
                      .|++.+|+|.. +.++=++..|+|++.|.....+             +..       -.++..+.|++.|          
T Consensus       215 VITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sG----------  284 (433)
T KOG1354|consen  215 VITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSG----------  284 (433)
T ss_pred             HHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCC----------
Confidence            57788899974 4555667789999999874332             111       1245568999999          


Q ss_pred             ccEEEEecCCCcEEEEECC
Q 036317           73 RSWVLEGSGDGSVYAWSAR   91 (106)
Q Consensus        73 ~~~i~t~s~d~~i~~wd~~   91 (106)
                       +|+++=+.- +|++||+.
T Consensus       285 -ryilsRDyl-tvk~wD~n  301 (433)
T KOG1354|consen  285 -RYILSRDYL-TVKLWDLN  301 (433)
T ss_pred             -cEEEEeccc-eeEEEecc
Confidence             999887665 89999995

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=96.32  E-value=0.0044  Score=45.49  Aligned_cols=73  Identities=15%  Similarity=0.157  Sum_probs=53.1

Q ss_pred             CCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce--------eccCCCcEEEEEec-CCcceeeeeeecccEEEEecC
Q 036317           11 DVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL--------PVSHNSTLEASFSQ-HLSLVALSVLILRSWVLEGSG   81 (106)
Q Consensus        11 ~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~--------~~~~~~~~~~~fs~-d~~~~~~~~~~~~~~i~t~s~   81 (106)
                      .++.|-+++|...+..+..++.+|+|..+|+..+..        .-+...++++..=. ++           +++++.+-
T Consensus       251 sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~-----------q~LmaS~M  319 (425)
T KOG2695|consen  251 SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQ-----------QKLMASDM  319 (425)
T ss_pred             cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhcccc-----------ceEeeccC
Confidence            356888899999899899999999999999976633        11222333322222 34           78889999


Q ss_pred             CCcEEEEECCCCC
Q 036317           82 DGSVYAWSARSGK   94 (106)
Q Consensus        82 d~~i~~wd~~~~~   94 (106)
                      +|+|++||++--+
T Consensus       320 ~gkikLyD~R~~K  332 (425)
T KOG2695|consen  320 TGKIKLYDLRATK  332 (425)
T ss_pred             cCceeEeeehhhh
Confidence            9999999998544

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.30  E-value=0.021  Score=45.69  Aligned_cols=65  Identities=23%  Similarity=0.207  Sum_probs=50.5

Q ss_pred             CCeEEEEeCCCeEEEEEcCCCce--eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEEECCCCC-------
Q 036317           24 GRLMLLTTLEGHIHVLHSFQGTL--PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSARSGK-------   94 (106)
Q Consensus        24 g~~l~~~~~~~~i~l~d~~~~~~--~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd~~~~~-------   94 (106)
                      +++++.++++|.+++++.. +..  ...+.+    + ..+|           .+++++|.||+|.|-.+-+++       
T Consensus        49 ~~~~~~GtH~g~v~~~~~~-~~~~~~~~~s~----~-~~~G-----------ey~asCS~DGkv~I~sl~~~~~~~~~df  111 (846)
T KOG2066|consen   49 DKFFALGTHRGAVYLTTCQ-GNPKTNFDHSS----S-ILEG-----------EYVASCSDDGKVVIGSLFTDDEITQYDF  111 (846)
T ss_pred             cceeeeccccceEEEEecC-Ccccccccccc----c-ccCC-----------ceEEEecCCCcEEEeeccCCccceeEec
Confidence            5788999999999998863 221  111111    1 6689           999999999999999988876       


Q ss_pred             --CCcEEEeCCCC
Q 036317           95 --EPPVIKWAPGS  105 (106)
Q Consensus        95 --~v~~i~~sp~~  105 (106)
                        ++.+|+++|+|
T Consensus       112 ~rpiksial~Pd~  124 (846)
T KOG2066|consen  112 KRPIKSIALHPDF  124 (846)
T ss_pred             CCcceeEEeccch
Confidence              89999999986

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=96.28  E-value=0.1  Score=32.37  Aligned_cols=75  Identities=13%  Similarity=0.132  Sum_probs=42.6

Q ss_pred             eeEEEEC---CCC-CeEEEEeCCCeEEEEEcCCCce-eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcE----
Q 036317           15 ANEVKLS---NDG-RLMLLTTLEGHIHVLHSFQGTL-PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSV----   85 (106)
Q Consensus        15 v~~v~~s---pdg-~~l~~~~~~~~i~l~d~~~~~~-~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i----   85 (106)
                      |+++++.   .|| +.|++++.|..|++|+-..-.. ......++.++-...+           + ++.+-++|+|    
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e~~~Ei~e~~~v~~L~~~~~~-----------~-F~Y~l~NGTVGvY~   69 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDEIVAEITETDKVTSLCSLGGG-----------R-FAYALANGTVGVYD   69 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCCcEEEEEecccceEEEEEcCCC-----------E-EEEEecCCEEEEEe
Confidence            4555554   343 5688999999999998653322 2233344444333334           3 4555555554    


Q ss_pred             ---EEEECCCCCCCcEEEe
Q 036317           86 ---YAWSARSGKEPPVIKW  101 (106)
Q Consensus        86 ---~~wd~~~~~~v~~i~~  101 (106)
                         ++|.+++...+.++.+
T Consensus        70 ~~~RlWRiKSK~~~~~~~~   88 (111)
T PF14783_consen   70 RSQRLWRIKSKNQVTSMAF   88 (111)
T ss_pred             CcceeeeeccCCCeEEEEE
Confidence               5666666555555543

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=96.28  E-value=0.057  Score=37.17  Aligned_cols=65  Identities=22%  Similarity=0.240  Sum_probs=49.3

Q ss_pred             EEECCCCCeEEEEeCCCeEEEEEcCCCce-----------e-------ccCCCcEEEEEecCCcceeeeeeecccEEEEe
Q 036317           18 VKLSNDGRLMLLTTLEGHIHVLHSFQGTL-----------P-------VSHNSTLEASFSQHLSLVALSVLILRSWVLEG   79 (106)
Q Consensus        18 v~~spdg~~l~~~~~~~~i~l~d~~~~~~-----------~-------~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~   79 (106)
                      +.+...+.++++.+.+|.+++||+.+++.           .       .....+..+.++.+|           .-|++-
T Consensus        16 ~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G-----------~PiV~l   84 (219)
T PF07569_consen   16 SFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNG-----------VPIVTL   84 (219)
T ss_pred             EEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCC-----------CEEEEE
Confidence            33667899999999999999999998886           1       123445678888888           766665


Q ss_pred             cCCCcEEEEECCCCC
Q 036317           80 SGDGSVYAWSARSGK   94 (106)
Q Consensus        80 s~d~~i~~wd~~~~~   94 (106)
                      + +|..+.|+..-+.
T Consensus        85 s-ng~~y~y~~~L~~   98 (219)
T PF07569_consen   85 S-NGDSYSYSPDLGC   98 (219)
T ss_pred             e-CCCEEEeccccce
Confidence            4 5788999887665

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=96.24  E-value=0.1  Score=40.37  Aligned_cols=85  Identities=16%  Similarity=0.309  Sum_probs=55.2

Q ss_pred             CCCeeEEEECCCCCeEEEEe--CCCeEEEEEcCCCce-eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEE
Q 036317           12 VSDANEVKLSNDGRLMLLTT--LEGHIHVLHSFQGTL-PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAW   88 (106)
Q Consensus        12 ~~~v~~v~~spdg~~l~~~~--~~~~i~l~d~~~~~~-~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~w   88 (106)
                      .++|.++.|+|+|+-+++.-  +=-.+.|+|..-.-+ ....++-..+-|+|.|.++.++.+.+        .-|.+-+|
T Consensus       270 ~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v~df~egpRN~~~fnp~g~ii~lAGFGN--------L~G~mEvw  341 (566)
T KOG2315|consen  270 EGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPVFDFPEGPRNTAFFNPHGNIILLAGFGN--------LPGDMEVW  341 (566)
T ss_pred             CCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEeEeCCCCCccceEECCCCCEEEEeecCC--------CCCceEEE
Confidence            46999999999997665442  446778888733222 22333334588999993333333222        34899999


Q ss_pred             ECCCCC--------CCcEEEeCCC
Q 036317           89 SARSGK--------EPPVIKWAPG  104 (106)
Q Consensus        89 d~~~~~--------~v~~i~~sp~  104 (106)
                      |+.+-+        .-.-.+|+|+
T Consensus       342 Dv~n~K~i~~~~a~~tt~~eW~Pd  365 (566)
T KOG2315|consen  342 DVPNRKLIAKFKAANTTVFEWSPD  365 (566)
T ss_pred             eccchhhccccccCCceEEEEcCC
Confidence            999866        4455678876

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.20  E-value=0.046  Score=43.89  Aligned_cols=75  Identities=13%  Similarity=0.151  Sum_probs=49.3

Q ss_pred             CCCeEEEEeCCCeEEEEEcCCCce---eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEEECC--------
Q 036317           23 DGRLMLLTTLEGHIHVLHSFQGTL---PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSAR--------   91 (106)
Q Consensus        23 dg~~l~~~~~~~~i~l~d~~~~~~---~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd~~--------   91 (106)
                      +|+|+++++.||.+.|-...+.+.   ...+.++..++++||-     ..-.+ +.+++|+.-| +.++.-.        
T Consensus        82 ~Gey~asCS~DGkv~I~sl~~~~~~~~~df~rpiksial~Pd~-----~~~~s-k~fv~GG~ag-lvL~er~wlgnk~~v  154 (846)
T KOG2066|consen   82 EGEYVASCSDDGKVVIGSLFTDDEITQYDFKRPIKSIALHPDF-----SRQQS-KQFVSGGMAG-LVLSERNWLGNKDSV  154 (846)
T ss_pred             CCceEEEecCCCcEEEeeccCCccceeEecCCcceeEEeccch-----hhhhh-hheeecCcce-EEEehhhhhcCccce
Confidence            499999999999999988877765   2344466789999991     00011 4566676666 6665322        


Q ss_pred             ---CCC-CCcEEEeCCC
Q 036317           92 ---SGK-EPPVIKWAPG  104 (106)
Q Consensus        92 ---~~~-~v~~i~~sp~  104 (106)
                         +++ +|.+++|.-+
T Consensus       155 ~l~~~eG~I~~i~W~g~  171 (846)
T KOG2066|consen  155 VLSEGEGPIHSIKWRGN  171 (846)
T ss_pred             eeecCccceEEEEecCc
Confidence               222 7777777644

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=96.20  E-value=0.14  Score=35.13  Aligned_cols=76  Identities=17%  Similarity=0.266  Sum_probs=53.6

Q ss_pred             CeeEEEECCCCCeEE-EEeCCCeEEEEEcCC--Cce-------eccC--CCcEEEEEecCCcceeeeeeecccEEEEecC
Q 036317           14 DANEVKLSNDGRLML-LTTLEGHIHVLHSFQ--GTL-------PVSH--NSTLEASFSQHLSLVALSVLILRSWVLEGSG   81 (106)
Q Consensus        14 ~v~~v~~spdg~~l~-~~~~~~~i~l~d~~~--~~~-------~~~~--~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~   81 (106)
                      ..+.++|+|||+.|. +-+..+.|..++...  .++       ....  +.+-.+++..+|           +..++.-.
T Consensus       135 ~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G-----------~l~va~~~  203 (246)
T PF08450_consen  135 FPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDG-----------NLWVADWG  203 (246)
T ss_dssp             SEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS------------EEEEEET
T ss_pred             cccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCC-----------CEEEEEcC
Confidence            567999999999775 556788899888752  322       1112  235568999999           87777667


Q ss_pred             CCcEEEEECCCCC----------CCcEEEe
Q 036317           82 DGSVYAWSARSGK----------EPPVIKW  101 (106)
Q Consensus        82 d~~i~~wd~~~~~----------~v~~i~~  101 (106)
                      .+.|.+++.+ |+          .+.+++|
T Consensus       204 ~~~I~~~~p~-G~~~~~i~~p~~~~t~~~f  232 (246)
T PF08450_consen  204 GGRIVVFDPD-GKLLREIELPVPRPTNCAF  232 (246)
T ss_dssp             TTEEEEEETT-SCEEEEEE-SSSSEEEEEE
T ss_pred             CCEEEEECCC-ccEEEEEcCCCCCEEEEEE
Confidence            7889999887 76          5566666

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.19  E-value=0.03  Score=46.28  Aligned_cols=61  Identities=20%  Similarity=0.287  Sum_probs=46.9

Q ss_pred             CCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----ec---cCCCcEEEEEecCCcceeeeeeecccEEEEecCCCc
Q 036317           13 SDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PV---SHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGS   84 (106)
Q Consensus        13 ~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~---~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~   84 (106)
                      ++|.+++|+.||+.++.|-.+|.|.+||...++.    ..   ....+..+.+..++           ..++++...|.
T Consensus       131 ~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~n-----------S~llt~D~~Gs  198 (1206)
T KOG2079|consen  131 GPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQN-----------SKLLTSDTGGS  198 (1206)
T ss_pred             CcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEeCCC-----------cEEEEccCCCc
Confidence            5999999999999999999999999999988776    11   12233445566677           67777777775

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.11  E-value=0.026  Score=44.12  Aligned_cols=86  Identities=19%  Similarity=0.197  Sum_probs=57.7

Q ss_pred             eeeecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce--e----ccCCCcEE--EEEecCCcceeeeeeecccE
Q 036317            4 DIFSDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL--P----VSHNSTLE--ASFSQHLSLVALSVLILRSW   75 (106)
Q Consensus         4 ~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~--~----~~~~~~~~--~~fs~d~~~~~~~~~~~~~~   75 (106)
                      +.|+...|+.+|.++.|=.|-+++++  -|+.+|+||...++.  +    ..++....  +.=+.+.           ..
T Consensus       776 CQfTY~aHkk~i~~igfL~~lr~i~S--cD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~-----------~i  842 (1034)
T KOG4190|consen  776 CQFTYQAHKKPIHDIGFLADLRSIAS--CDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDR-----------HI  842 (1034)
T ss_pred             eeeEhhhccCcccceeeeeccceeee--ccCcceeecccccchhHhhhcCcccCCCceeEecccCcc-----------hh
Confidence            45666677888999999888886655  578899999988876  1    12222222  2223233           43


Q ss_pred             EEEe-cCCCcEEEEECCCCCCCcEEEeC
Q 036317           76 VLEG-SGDGSVYAWSARSGKEPPVIKWA  102 (106)
Q Consensus        76 i~t~-s~d~~i~~wd~~~~~~v~~i~~s  102 (106)
                      +..| +...+|+++|.+++++++.++.+
T Consensus       843 liAgcsaeSTVKl~DaRsce~~~E~kVc  870 (1034)
T KOG4190|consen  843 LIAGCSAESTVKLFDARSCEWTCELKVC  870 (1034)
T ss_pred             eeeeccchhhheeeecccccceeeEEec
Confidence            4444 77889999999999866655554

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=96.10  E-value=0.018  Score=45.53  Aligned_cols=71  Identities=14%  Similarity=0.060  Sum_probs=58.7

Q ss_pred             CCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----------eccCCCcEEEEEecCCcceeeeeeecccEEEEec
Q 036317           11 DVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----------PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGS   80 (106)
Q Consensus        11 ~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----------~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s   80 (106)
                      ..+.+....+|++..++|++++++.|.++-+..+..          ..+...+++++|++|+           ..+.+|+
T Consensus        75 ~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~-----------~k~ysGD  143 (726)
T KOG3621|consen   75 ATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNG-----------MKLYSGD  143 (726)
T ss_pred             ccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecccc-----------cEEeecC
Confidence            345677888899999999999999999987765433          2245578899999999           9999999


Q ss_pred             CCCcEEEEECCC
Q 036317           81 GDGSVYAWSARS   92 (106)
Q Consensus        81 ~d~~i~~wd~~~   92 (106)
                      .-|+|.+-.+.+
T Consensus       144 ~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  144 SQGKVVLTELDS  155 (726)
T ss_pred             CCceEEEEEech
Confidence            999999988887

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=96.07  E-value=0.17  Score=36.15  Aligned_cols=40  Identities=20%  Similarity=0.211  Sum_probs=33.1

Q ss_pred             ecCCCCC-CeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce
Q 036317            7 SDGGDVS-DANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL   46 (106)
Q Consensus         7 ~~~~~~~-~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~   46 (106)
                      ++..+.. ..+.++||||+..+|.+...|+|+++|+...++
T Consensus        37 qVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~l   77 (282)
T PF15492_consen   37 QVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSEL   77 (282)
T ss_pred             ecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccccee
Confidence            4444444 688999999999999999999999999986555

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.01  E-value=0.0067  Score=47.23  Aligned_cols=82  Identities=12%  Similarity=0.216  Sum_probs=59.5

Q ss_pred             CCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCC-Cce----------eccCCCcEEEEEecCCcceeeeeeecccEEE
Q 036317            9 GGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQ-GTL----------PVSHNSTLEASFSQHLSLVALSVLILRSWVL   77 (106)
Q Consensus         9 ~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~-~~~----------~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~   77 (106)
                      .||...|+.++--.+.+-+++++.|+++++|.++. +..          ..++.++-++.|-.|.           ++|+
T Consensus       732 ~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~l-----------r~i~  800 (1034)
T KOG4190|consen  732 TGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADL-----------RSIA  800 (1034)
T ss_pred             cCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeecc-----------ceee
Confidence            45666788777767777789999999999999753 211          3456667778888888           8886


Q ss_pred             EecCCCcEEEEECCCCCCCcEEEeCC
Q 036317           78 EGSGDGSVYAWSARSGKEPPVIKWAP  103 (106)
Q Consensus        78 t~s~d~~i~~wd~~~~~~v~~i~~sp  103 (106)
                      ++  |+-|.+||---|.....+.+.|
T Consensus       801 Sc--D~giHlWDPFigr~Laq~~dap  824 (1034)
T KOG4190|consen  801 SC--DGGIHLWDPFIGRLLAQMEDAP  824 (1034)
T ss_pred             ec--cCcceeecccccchhHhhhcCc
Confidence            65  6789999988777444444444

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=95.95  E-value=0.067  Score=39.71  Aligned_cols=36  Identities=8%  Similarity=0.051  Sum_probs=30.0

Q ss_pred             eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEEECCCC
Q 036317           47 PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSARSG   93 (106)
Q Consensus        47 ~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd~~~~   93 (106)
                      .+|-..++.++++||+           ++|+|++.|..|++-.+...
T Consensus       148 lGhvSml~dVavS~D~-----------~~IitaDRDEkIRvs~ypa~  183 (390)
T KOG3914|consen  148 LGHVSMLLDVAVSPDD-----------QFIITADRDEKIRVSRYPAT  183 (390)
T ss_pred             hhhhhhhheeeecCCC-----------CEEEEecCCceEEEEecCcc
Confidence            3455667789999999           99999999999999877543

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=95.93  E-value=0.019  Score=41.96  Aligned_cols=69  Identities=16%  Similarity=0.197  Sum_probs=49.4

Q ss_pred             CeeEEEECCCCC-eEEEEeCCCeEEEEEcCCCce-------------e-------ccCCCcEEEEEecCCcceeeeeeec
Q 036317           14 DANEVKLSNDGR-LMLLTTLEGHIHVLHSFQGTL-------------P-------VSHNSTLEASFSQHLSLVALSVLIL   72 (106)
Q Consensus        14 ~v~~v~~spdg~-~l~~~~~~~~i~l~d~~~~~~-------------~-------~~~~~~~~~~fs~d~~~~~~~~~~~   72 (106)
                      .|++.+|+|... .+.-++..|+|++-|.....+             +       ....++..+.|++.|          
T Consensus       223 VItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ng----------  292 (460)
T COG5170         223 VITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNG----------  292 (460)
T ss_pred             HHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCC----------
Confidence            567888888744 334456779999999874332             1       112345568999999          


Q ss_pred             ccEEEEecCCCcEEEEECCCCC
Q 036317           73 RSWVLEGSGDGSVYAWSARSGK   94 (106)
Q Consensus        73 ~~~i~t~s~d~~i~~wd~~~~~   94 (106)
                       ++|++-+.- ++++||....+
T Consensus       293 -ryIlsRdyl-tvkiwDvnm~k  312 (460)
T COG5170         293 -RYILSRDYL-TVKIWDVNMAK  312 (460)
T ss_pred             -cEEEEeccc-eEEEEeccccc
Confidence             999887766 89999998655

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=95.84  E-value=0.038  Score=28.97  Aligned_cols=32  Identities=16%  Similarity=0.261  Sum_probs=27.9

Q ss_pred             CcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEEECCCCCC
Q 036317           52 STLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSARSGKE   95 (106)
Q Consensus        52 ~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd~~~~~~   95 (106)
                      .+..++|+|..           ..||.+..+|.|.++.+ +++.
T Consensus        13 ~v~~~~w~P~m-----------dLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   13 RVSCMSWCPTM-----------DLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             cEEEEEECCCC-----------CEEEEEECCCeEEEEEC-CCcC
Confidence            45679999999           99999999999999999 5553

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=95.63  E-value=0.037  Score=43.34  Aligned_cols=42  Identities=14%  Similarity=0.194  Sum_probs=34.3

Q ss_pred             eeecCCCCCCee-EEEECCCCCeEEEEeCCCeEEEEEcCCCce
Q 036317            5 IFSDGGDVSDAN-EVKLSNDGRLMLLTTLEGHIHVLHSFQGTL   46 (106)
Q Consensus         5 ~~~~~~~~~~v~-~v~~spdg~~l~~~~~~~~i~l~d~~~~~~   46 (106)
                      .|.+..+.-.++ +++|.|||+.++++-.||+|++.|++++..
T Consensus        54 lwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~   96 (665)
T KOG4640|consen   54 LWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGR   96 (665)
T ss_pred             eEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCc
Confidence            344544444566 999999999999999999999999988765

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=95.41  E-value=0.057  Score=47.10  Aligned_cols=89  Identities=11%  Similarity=0.216  Sum_probs=54.2

Q ss_pred             eeecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce---eccCCCcEEE-------------------------
Q 036317            5 IFSDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL---PVSHNSTLEA-------------------------   56 (106)
Q Consensus         5 ~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~---~~~~~~~~~~-------------------------   56 (106)
                      .|...+. .+|+.+.|+-.|++..++-.||.+-+|.+-..-.   +.+.....+.                         
T Consensus      2245 ~~rt~g~-s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk~~~s~qchnk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl 2323 (2439)
T KOG1064|consen 2245 CFRTAGN-SRVTRSRFNHQGNKFGIVDGDGDLSLWQASPKPYTSWQCHNKALSDFRFIGSLLATAGRSSDNRNVCLWDTL 2323 (2439)
T ss_pred             EeeccCc-chhhhhhhcccCCceeeeccCCceeecccCCcceeccccCCccccceeeeehhhhccccCCCCCcccchhcc
Confidence            4555565 7888999999999888888899888887531111   0000000000                         


Q ss_pred             --------EEecCCcceeeeeeecccEEEEecCCCcEEEEECCCCC
Q 036317           57 --------SFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSARSGK   94 (106)
Q Consensus        57 --------~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd~~~~~   94 (106)
                              .-.+++.-.-+..++..+.+++|+.+|.|++||++..+
T Consensus      2324 ~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrq 2369 (2439)
T KOG1064|consen 2324 LPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQ 2369 (2439)
T ss_pred             cCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHH
Confidence                    00111111113344444999999999999999998654

>PRK13616 lipoprotein LpqB; Provisional

Probab=95.39  E-value=0.21  Score=39.30  Aligned_cols=90  Identities=14%  Similarity=0.097  Sum_probs=53.3

Q ss_pred             CeeEEEECCCCCeEEEEe------CCC--eEEEEEcCCCce-e-ccCCCcEEEEEecCCcceeeeeeecc-cEEEEecCC
Q 036317           14 DANEVKLSNDGRLMLLTT------LEG--HIHVLHSFQGTL-P-VSHNSTLEASFSQHLSLVALSVLILR-SWVLEGSGD   82 (106)
Q Consensus        14 ~v~~v~~spdg~~l~~~~------~~~--~i~l~d~~~~~~-~-~~~~~~~~~~fs~d~~~~~~~~~~~~-~~i~t~s~d   82 (106)
                      .+.+.++||||+.++...      .+.  .+.+.+. .+.. + .........+|+|||++++...-..+ -++......
T Consensus       351 ~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~~~lt~g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~  429 (591)
T PRK13616        351 NITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVAVQVLEGHSLTRPSWSLDADAVWVVVDGNTVVRVIRDPAT  429 (591)
T ss_pred             CcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcceeeecCCCCCCceECCCCCceEEEecCcceEEEeccCCC
Confidence            678999999999887766      233  4555554 2222 1 11113556899999965554321111 122222334


Q ss_pred             CcEEEEECCCCC-------CCcEEEeCCC
Q 036317           83 GSVYAWSARSGK-------EPPVIKWAPG  104 (106)
Q Consensus        83 ~~i~~wd~~~~~-------~v~~i~~sp~  104 (106)
                      +.+++.++..++       .|..++|||+
T Consensus       430 gql~~~~vd~ge~~~~~~g~Issl~wSpD  458 (591)
T PRK13616        430 GQLARTPVDASAVASRVPGPISELQLSRD  458 (591)
T ss_pred             ceEEEEeccCchhhhccCCCcCeEEECCC
Confidence            566666776543       6999999996

>PRK02888 nitrous-oxide reductase; Validated

Probab=95.33  E-value=0.095  Score=41.39  Aligned_cols=68  Identities=16%  Similarity=0.192  Sum_probs=51.1

Q ss_pred             CeeEEEECCCCCeEEEEe-CCCeEEEEEcCCCce---------------eccCCCcEEEEEecCCcceeeeeeecccEEE
Q 036317           14 DANEVKLSNDGRLMLLTT-LEGHIHVLHSFQGTL---------------PVSHNSTLEASFSQHLSLVALSVLILRSWVL   77 (106)
Q Consensus        14 ~v~~v~~spdg~~l~~~~-~~~~i~l~d~~~~~~---------------~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~   77 (106)
                      ....+.+||||+++++++ .+.++.++|..+.+.               ..--..+....|+++|           .-..
T Consensus       322 sPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G-----------~ayt  390 (635)
T PRK02888        322 NPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRG-----------NAYT  390 (635)
T ss_pred             CccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcceEEECCCC-----------CEEE
Confidence            567899999999998776 589999999877542               0011133567899999           7666


Q ss_pred             EecCCCcEEEEECCC
Q 036317           78 EGSGDGSVYAWSARS   92 (106)
Q Consensus        78 t~s~d~~i~~wd~~~   92 (106)
                      |-..|..|..|+++.
T Consensus       391 slf~dsqv~kwn~~~  405 (635)
T PRK02888        391 TLFLDSQIVKWNIEA  405 (635)
T ss_pred             eEeecceeEEEehHH
Confidence            667788999999886

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=95.31  E-value=0.62  Score=35.23  Aligned_cols=96  Identities=15%  Similarity=0.214  Sum_probs=55.5

Q ss_pred             eecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEe----cCCccee---ee--eeec
Q 036317            6 FSDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFS----QHLSLVA---LS--VLIL   72 (106)
Q Consensus         6 ~~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs----~d~~~~~---~~--~~~~   72 (106)
                      +.+...+-.+.++..+|++++.+++-.-|.|.|+|..++.+    ++.....  |.|-    +..+.--   -.  ....
T Consensus       301 ~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAq--c~wi~~~~~~~~~~~~~~~~~~~~~~  378 (415)
T PF14655_consen  301 FGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQ--CGWIEVPEEGDRDRSNSNSPKSSSRF  378 (415)
T ss_pred             EeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccce--EEEEEeecccccccccccccCCCCcc
Confidence            44444455799999999999888876669999999998877    2222222  2211    1110000   00  0000


Q ss_pred             ccEE-EEecCCCcEEEEECCCCCCCcEEEeCC
Q 036317           73 RSWV-LEGSGDGSVYAWSARSGKEPPVIKWAP  103 (106)
Q Consensus        73 ~~~i-~t~s~d~~i~~wd~~~~~~v~~i~~sp  103 (106)
                      ..++ +-.-.-|.|-||++++|..|-.+...+
T Consensus       379 ~l~LvIyaprRg~lEvW~~~~g~Rv~a~~v~k  410 (415)
T PF14655_consen  379 ALFLVIYAPRRGILEVWSMRQGPRVAAFNVGK  410 (415)
T ss_pred             eEEEEEEeccCCeEEEEecCCCCEEEEEEeCC
Confidence            0122 223345789999999998666655543

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=95.24  E-value=0.11  Score=37.76  Aligned_cols=27  Identities=19%  Similarity=0.231  Sum_probs=21.7

Q ss_pred             cEEEEecCCCcEEEEECCCCCCCcEEE
Q 036317           74 SWVLEGSGDGSVYAWSARSGKEPPVIK  100 (106)
Q Consensus        74 ~~i~t~s~d~~i~~wd~~~~~~v~~i~  100 (106)
                      ..|+.++.+|.++++|.++|+.+..++
T Consensus       321 ~~l~~~~~~G~l~~~d~~tG~~~~~~~  347 (377)
T TIGR03300       321 GYLVVGDFEGYLHWLSREDGSFVARLK  347 (377)
T ss_pred             CEEEEEeCCCEEEEEECCCCCEEEEEE
Confidence            578888999999999999998444443

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.22  E-value=0.063  Score=44.48  Aligned_cols=66  Identities=26%  Similarity=0.330  Sum_probs=49.3

Q ss_pred             CCeEEEEeCCCeEEEEEcCCCce------eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEEECCCCCCCc
Q 036317           24 GRLMLLTTLEGHIHVLHSFQGTL------PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSARSGKEPP   97 (106)
Q Consensus        24 g~~l~~~~~~~~i~l~d~~~~~~------~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd~~~~~~v~   97 (106)
                      +-.++.++..+++...|... ++      ....+++.+++|+.||           +.++.|-.+|-|.+||+..++..+
T Consensus        99 ~~~ivi~Ts~ghvl~~d~~~-nL~~~~~ne~v~~~Vtsvafn~dg-----------~~l~~G~~~G~V~v~D~~~~k~l~  166 (1206)
T KOG2079|consen   99 VVPIVIGTSHGHVLLSDMTG-NLGPLHQNERVQGPVTSVAFNQDG-----------SLLLAGLGDGHVTVWDMHRAKILK  166 (1206)
T ss_pred             eeeEEEEcCchhhhhhhhhc-ccchhhcCCccCCcceeeEecCCC-----------ceeccccCCCcEEEEEccCCccee
Confidence            44567777777777777533 22      2244677889999999           999999999999999999987444


Q ss_pred             EEEe
Q 036317           98 VIKW  101 (106)
Q Consensus        98 ~i~~  101 (106)
                      .+.+
T Consensus       167 ~i~e  170 (1206)
T KOG2079|consen  167 VITE  170 (1206)
T ss_pred             eeee
Confidence            4433

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=95.13  E-value=0.67  Score=32.60  Aligned_cols=74  Identities=15%  Similarity=0.239  Sum_probs=46.7

Q ss_pred             ecCCCCCCeeEEEECCCCCeEE-EEeCCCeEEEEEcCCCce----e-ccCCCcEEEEEecCCcceeeeeeecccEEEEec
Q 036317            7 SDGGDVSDANEVKLSNDGRLML-LTTLEGHIHVLHSFQGTL----P-VSHNSTLEASFSQHLSLVALSVLILRSWVLEGS   80 (106)
Q Consensus         7 ~~~~~~~~v~~v~~spdg~~l~-~~~~~~~i~l~d~~~~~~----~-~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s   80 (106)
                      .+.+-..+++.+.|+|+.+.++ +....+.+.-++. +|++    + ...+-...+++.-++           +++++.-
T Consensus        16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~-----------~~vl~~E   83 (248)
T PF06977_consen   16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNG-----------RYVLSEE   83 (248)
T ss_dssp             E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STT-----------EEEEEET
T ss_pred             ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCC-----------EEEEEEc
Confidence            4455556899999999866555 5556677777775 5776    1 123445678888888           8888877


Q ss_pred             CCCcEEEEECCC
Q 036317           81 GDGSVYAWSARS   92 (106)
Q Consensus        81 ~d~~i~~wd~~~   92 (106)
                      .++.+.+.++..
T Consensus        84 r~~~L~~~~~~~   95 (248)
T PF06977_consen   84 RDQRLYIFTIDD   95 (248)
T ss_dssp             TTTEEEEEEE--
T ss_pred             CCCcEEEEEEec
Confidence            788888888843

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=95.10  E-value=0.18  Score=41.68  Aligned_cols=28  Identities=29%  Similarity=0.334  Sum_probs=24.5

Q ss_pred             CCeeEEEECCCCCeEEEEeCCCeEEEEE
Q 036317           13 SDANEVKLSNDGRLMLLTTLEGHIHVLH   40 (106)
Q Consensus        13 ~~v~~v~~spdg~~l~~~~~~~~i~l~d   40 (106)
                      +.|.+++||||++.++.++.++++.+..
T Consensus       121 ~GI~a~~WSPD~Ella~vT~~~~l~~mt  148 (928)
T PF04762_consen  121 SGILAASWSPDEELLALVTGEGNLLLMT  148 (928)
T ss_pred             CcEEEEEECCCcCEEEEEeCCCEEEEEe
Confidence            4899999999999999999998887654

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=95.10  E-value=0.25  Score=40.15  Aligned_cols=88  Identities=15%  Similarity=0.205  Sum_probs=57.8

Q ss_pred             CCCCCCeeEEEECCCC------------CeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeec
Q 036317            9 GGDVSDANEVKLSNDG------------RLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLIL   72 (106)
Q Consensus         9 ~~~~~~v~~v~~spdg------------~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~   72 (106)
                      +-|...|+.+.|.|-.            -.++++-..|.|.+||...+.+    ..+..++..+.|-+..       -..
T Consensus        52 e~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~r-------d~S  124 (1062)
T KOG1912|consen   52 ELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPAR-------DDS  124 (1062)
T ss_pred             ccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeecc-------Ccc
Confidence            3455689999998631            1345555669999999887765    3344455556655331       112


Q ss_pred             ccEEEEecCCCcEEEEECCCCC----------CCcEEEeCC
Q 036317           73 RSWVLEGSGDGSVYAWSARSGK----------EPPVIKWAP  103 (106)
Q Consensus        73 ~~~i~t~s~d~~i~~wd~~~~~----------~v~~i~~sp  103 (106)
                      |.+++.-+...++.+|+..+|+          ...|+.+.|
T Consensus       125 rd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DP  165 (1062)
T KOG1912|consen  125 RDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDP  165 (1062)
T ss_pred             hheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCC
Confidence            3466667777899999999998          445566665

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=95.02  E-value=0.34  Score=33.15  Aligned_cols=67  Identities=16%  Similarity=0.227  Sum_probs=45.0

Q ss_pred             CCeeEEEECCCCCeEEEEeCC--------CeEEEEEcCCCce---eccCCCcEEEEEecCCcceeeeeeecccEEE-Eec
Q 036317           13 SDANEVKLSNDGRLMLLTTLE--------GHIHVLHSFQGTL---PVSHNSTLEASFSQHLSLVALSVLILRSWVL-EGS   80 (106)
Q Consensus        13 ~~v~~v~~spdg~~l~~~~~~--------~~i~l~d~~~~~~---~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~-t~s   80 (106)
                      ...++++++|+|+..++....        +.+..++.. ++.   .........++|+||+           +.+. +-+
T Consensus        86 ~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg-----------~~lyv~ds  153 (246)
T PF08450_consen   86 NRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDG-----------KTLYVADS  153 (246)
T ss_dssp             EEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTS-----------SEEEEEET
T ss_pred             CCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcc-----------hheeeccc
Confidence            478999999999977766544        457777776 555   2223345679999999           7554 555


Q ss_pred             CCCcEEEEECC
Q 036317           81 GDGSVYAWSAR   91 (106)
Q Consensus        81 ~d~~i~~wd~~   91 (106)
                      ..+.|..+++.
T Consensus       154 ~~~~i~~~~~~  164 (246)
T PF08450_consen  154 FNGRIWRFDLD  164 (246)
T ss_dssp             TTTEEEEEEEE
T ss_pred             ccceeEEEecc
Confidence            66677777775

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=95.01  E-value=0.045  Score=43.99  Aligned_cols=78  Identities=13%  Similarity=0.271  Sum_probs=58.0

Q ss_pred             eecCCCCCCeeEEEECCCCC-eEEEEeCCCeEEEEEcCCCcee-----ccCCCcEEEEEecCCcceeeeeeecccEEEEe
Q 036317            6 FSDGGDVSDANEVKLSNDGR-LMLLTTLEGHIHVLHSFQGTLP-----VSHNSTLEASFSQHLSLVALSVLILRSWVLEG   79 (106)
Q Consensus         6 ~~~~~~~~~v~~v~~spdg~-~l~~~~~~~~i~l~d~~~~~~~-----~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~   79 (106)
                      |-+.+|...|+.+-|.|+.. .+++.+.|-.++.||..+...+     ..+.....+.|+...           -.++..
T Consensus       108 f~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~-----------p~vlas  176 (1081)
T KOG0309|consen  108 FVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKD-----------PNVLAS  176 (1081)
T ss_pred             EEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccC-----------cchhhh
Confidence            44567777899999998754 4567789999999999877652     122333458888666           566667


Q ss_pred             cCCCcEEEEECCCCC
Q 036317           80 SGDGSVYAWSARSGK   94 (106)
Q Consensus        80 s~d~~i~~wd~~~~~   94 (106)
                      +....|++||++.|.
T Consensus       177 shg~~i~vwd~r~gs  191 (1081)
T KOG0309|consen  177 SHGNDIFVWDLRKGS  191 (1081)
T ss_pred             ccCCceEEEeccCCC
Confidence            777799999999887

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=94.97  E-value=0.11  Score=38.04  Aligned_cols=67  Identities=22%  Similarity=0.304  Sum_probs=48.4

Q ss_pred             CCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce-----ec-----------c-CCCc---EEEEEecCCcceeeeeeec
Q 036317           13 SDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL-----PV-----------S-HNST---LEASFSQHLSLVALSVLIL   72 (106)
Q Consensus        13 ~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~-----~~-----------~-~~~~---~~~~fs~d~~~~~~~~~~~   72 (106)
                      +.|+.++|++.|+|+++.. -.++++||..-.+.     +.           . ...+   -.+.||-|.          
T Consensus       281 sSISD~kFs~ngryIlsRd-yltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~----------  349 (460)
T COG5170         281 SSISDFKFSDNGRYILSRD-YLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDD----------  349 (460)
T ss_pred             hhhcceEEcCCCcEEEEec-cceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEEecCCc----------
Confidence            4789999999999887754 46899999765443     10           1 1122   248899999          


Q ss_pred             ccEEEEecCCCcEEEEECC
Q 036317           73 RSWVLEGSGDGSVYAWSAR   91 (106)
Q Consensus        73 ~~~i~t~s~d~~i~~wd~~   91 (106)
                       +.+++||+....-++-..
T Consensus       350 -~~v~sgsy~NNfgiyp~~  367 (460)
T COG5170         350 -KHVLSGSYSNNFGIYPTD  367 (460)
T ss_pred             -ccccccccccceeeeccc
Confidence             999999988877777644

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=94.97  E-value=0.19  Score=38.88  Aligned_cols=71  Identities=15%  Similarity=0.127  Sum_probs=57.1

Q ss_pred             CCCeEEEEeCCCeEEEEEcCCCce------eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEEECCCCC--
Q 036317           23 DGRLMLLTTLEGHIHVLHSFQGTL------PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSARSGK--   94 (106)
Q Consensus        23 dg~~l~~~~~~~~i~l~d~~~~~~------~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd~~~~~--   94 (106)
                      |-..++.+...|.|.+++...|++      -.+.+.+..+.++.+-           ..|-+++.|+.+..|+.++++  
T Consensus        69 ~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~-----------~ciyS~~ad~~v~~~~~~~~~~~  137 (541)
T KOG4547|consen   69 DTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRL-----------GCIYSVGADLKVVYILEKEKVII  137 (541)
T ss_pred             CceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeeccccc-----------CceEecCCceeEEEEecccceee
Confidence            344667888899999999998887      2355667777788888           899999999999999999887  


Q ss_pred             --------CCcEEEeCCC
Q 036317           95 --------EPPVIKWAPG  104 (106)
Q Consensus        95 --------~v~~i~~sp~  104 (106)
                              .+.++..+|+
T Consensus       138 ~~~~~~~~~~~sl~is~D  155 (541)
T KOG4547|consen  138 RIWKEQKPLVSSLCISPD  155 (541)
T ss_pred             eeeccCCCccceEEEcCC
Confidence                    5666777765

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=94.95  E-value=0.045  Score=44.70  Aligned_cols=67  Identities=12%  Similarity=0.054  Sum_probs=56.8

Q ss_pred             CeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEEE
Q 036317           14 DANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWS   89 (106)
Q Consensus        14 ~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd   89 (106)
                      .+.++.|+|..-.++.+-.-+.+.+|...+.+.    ..+...+..+.|||+|           ..++|++.-|.+.+|.
T Consensus        61 hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G-----------~~l~t~d~~g~v~lwr  129 (1416)
T KOG3617|consen   61 HATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDG-----------TVLMTLDNPGSVHLWR  129 (1416)
T ss_pred             ehhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCC-----------CeEEEcCCCceeEEEE
Confidence            456899999988778888889999999877665    3366677789999999           9999999999999998


Q ss_pred             CC
Q 036317           90 AR   91 (106)
Q Consensus        90 ~~   91 (106)
                      ..
T Consensus       130 ~d  131 (1416)
T KOG3617|consen  130 YD  131 (1416)
T ss_pred             ee
Confidence            76

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=94.80  E-value=0.55  Score=34.09  Aligned_cols=73  Identities=14%  Similarity=0.200  Sum_probs=48.0

Q ss_pred             CCCCeeEEEECCCCCeEEEEeCCCe-------EEEEEcCCC-ce--------eccCCCcEEEEEecCCcceeeeeeeccc
Q 036317           11 DVSDANEVKLSNDGRLMLLTTLEGH-------IHVLHSFQG-TL--------PVSHNSTLEASFSQHLSLVALSVLILRS   74 (106)
Q Consensus        11 ~~~~v~~v~~spdg~~l~~~~~~~~-------i~l~d~~~~-~~--------~~~~~~~~~~~fs~d~~~~~~~~~~~~~   74 (106)
                      ++..|+.++++++|..+...-..+.       +.+++.... +.        ..-.+++-++++++++           .
T Consensus       161 ~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g-----------~  229 (305)
T PF07433_consen  161 HQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDG-----------R  229 (305)
T ss_pred             cccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCC-----------C
Confidence            4458999999999995554433332       222222111 01        2235677889999999           7


Q ss_pred             EEEEec-CCCcEEEEECCCCC
Q 036317           75 WVLEGS-GDGSVYAWSARSGK   94 (106)
Q Consensus        75 ~i~t~s-~d~~i~~wd~~~~~   94 (106)
                      +|+..| ..+.+.+||..+|+
T Consensus       230 ~ia~tsPrGg~~~~~d~~tg~  250 (305)
T PF07433_consen  230 LIAVTSPRGGRVAVWDAATGR  250 (305)
T ss_pred             EEEEECCCCCEEEEEECCCCC
Confidence            775555 46699999999998

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=94.78  E-value=0.24  Score=40.03  Aligned_cols=87  Identities=14%  Similarity=0.164  Sum_probs=64.1

Q ss_pred             ecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce-----ec-cCCCcEEEEEecCCcceeeeeeecccEEEEec
Q 036317            7 SDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL-----PV-SHNSTLEASFSQHLSLVALSVLILRSWVLEGS   80 (106)
Q Consensus         7 ~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~-----~~-~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s   80 (106)
                      .++||...|.-+.|+-..+++-++..+|-|-+|-...|..     .+ .+..+.+.+|..||           ..|...-
T Consensus        66 tLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG-----------~kIcIvY  134 (1189)
T KOG2041|consen   66 TLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDG-----------TKICIVY  134 (1189)
T ss_pred             hhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCC-----------cEEEEEE
Confidence            3578888999999999999888888999999999988875     22 33345679999999           7777777


Q ss_pred             CCCcEEEEECCCC---------CCCcEEEeCCC
Q 036317           81 GDGSVYAWSARSG---------KEPPVIKWAPG  104 (106)
Q Consensus        81 ~d~~i~~wd~~~~---------~~v~~i~~sp~  104 (106)
                      +||.|-+=.++..         +...-+.|+|+
T Consensus       135 eDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D  167 (1189)
T KOG2041|consen  135 EDGAVIVGSVDGNRIWGKELKGQLLAHVLWSED  167 (1189)
T ss_pred             ccCCEEEEeeccceecchhcchheccceeeccc
Confidence            7776665544432         24445566664

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=94.72  E-value=0.62  Score=37.56  Aligned_cols=80  Identities=15%  Similarity=0.182  Sum_probs=52.3

Q ss_pred             CeeEEEECCCCCeEEEEeCCCeEEEEEcC-----CC-----ce---------------eccCCCcEEEEEecCCcceeee
Q 036317           14 DANEVKLSNDGRLMLLTTLEGHIHVLHSF-----QG-----TL---------------PVSHNSTLEASFSQHLSLVALS   68 (106)
Q Consensus        14 ~v~~v~~spdg~~l~~~~~~~~i~l~d~~-----~~-----~~---------------~~~~~~~~~~~fs~d~~~~~~~   68 (106)
                      +|..+.+||+|++++..+..+ +.|..+-     .+     +.               .+....+..+.|+|.+      
T Consensus        86 ~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s------  158 (717)
T PF10168_consen   86 EVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWS------  158 (717)
T ss_pred             eEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCC------
Confidence            899999999999999888766 4444431     11     11               0112245578999873      


Q ss_pred             eeecccEEEEecCCCcEEEEECCCCC-CCcEEEeC
Q 036317           69 VLILRSWVLEGSGDGSVYAWSARSGK-EPPVIKWA  102 (106)
Q Consensus        69 ~~~~~~~i~t~s~d~~i~~wd~~~~~-~v~~i~~s  102 (106)
                        .....++.=..|+++++||+...+ +...+.++
T Consensus       159 --~~~~~l~vLtsdn~lR~y~~~~~~~p~~v~~~~  191 (717)
T PF10168_consen  159 --ESDSHLVVLTSDNTLRLYDISDPQHPWQVLSLS  191 (717)
T ss_pred             --CCCCeEEEEecCCEEEEEecCCCCCCeEEEEcc
Confidence              111566666778999999998766 44444444

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=94.71  E-value=0.27  Score=36.25  Aligned_cols=81  Identities=12%  Similarity=0.071  Sum_probs=45.3

Q ss_pred             CeeEEEECCCCCeEEEEe-CC----CeEEEEEcCCCce-ecc--CCCcEEEEEecCCcceeeeeeecccEEEEecCCCcE
Q 036317           14 DANEVKLSNDGRLMLLTT-LE----GHIHVLHSFQGTL-PVS--HNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSV   85 (106)
Q Consensus        14 ~v~~v~~spdg~~l~~~~-~~----~~i~l~d~~~~~~-~~~--~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i   85 (106)
                      .+..+.+||||+++|.+. ..    -+++++|+.+|+. ...  ......+.|.+|++.+.+.-..-............|
T Consensus       125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v  204 (414)
T PF02897_consen  125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV  204 (414)
T ss_dssp             EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred             EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence            345788999999998663 22    4589999999987 211  111123899999844433322211000001113357


Q ss_pred             EEEECCCCC
Q 036317           86 YAWSARSGK   94 (106)
Q Consensus        86 ~~wd~~~~~   94 (106)
                      +.|++-+++
T Consensus       205 ~~~~~gt~~  213 (414)
T PF02897_consen  205 YRHKLGTPQ  213 (414)
T ss_dssp             EEEETTS-G
T ss_pred             EEEECCCCh
Confidence            777776554

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=94.70  E-value=0.079  Score=37.79  Aligned_cols=69  Identities=13%  Similarity=0.160  Sum_probs=48.5

Q ss_pred             CCCCCeeEEEECC-CCCeEEEEeCCCeEEEEEcCCCce---ec---c-------------------CCCcEE-EEEecCC
Q 036317           10 GDVSDANEVKLSN-DGRLMLLTTLEGHIHVLHSFQGTL---PV---S-------------------HNSTLE-ASFSQHL   62 (106)
Q Consensus        10 ~~~~~v~~v~~sp-dg~~l~~~~~~~~i~l~d~~~~~~---~~---~-------------------~~~~~~-~~fs~d~   62 (106)
                      .|+.+++.+.|+| ++.+|++++.||.+..||+-+.-+   .+   .                   .....+ .+|.--|
T Consensus       221 ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~~~l~i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV~g  300 (319)
T KOG4714|consen  221 AHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDASTTFLSISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINSFDVLG  300 (319)
T ss_pred             HhhhhhhheeccCCCchheeEecCCCcEEEEcCCCceEEecCccccccccccCCcccceEeeeccccccceeeeeeeccC
Confidence            4567999999998 588999999999999999864322   00   0                   000011 2455556


Q ss_pred             cceeeeeeecccEEEEecCCCcEEEEE
Q 036317           63 SLVALSVLILRSWVLEGSGDGSVYAWS   89 (106)
Q Consensus        63 ~~~~~~~~~~~~~i~t~s~d~~i~~wd   89 (106)
                                 ..+++|+.-+-|++.+
T Consensus       301 -----------~~lVcgtd~eaIyl~~  316 (319)
T KOG4714|consen  301 -----------PCLVCGTDAEAIYLTR  316 (319)
T ss_pred             -----------ceEEeccccceEEEec
Confidence                       7899999888888875

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=94.68  E-value=0.26  Score=40.08  Aligned_cols=65  Identities=11%  Similarity=0.217  Sum_probs=46.6

Q ss_pred             CCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEE
Q 036317           13 SDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAW   88 (106)
Q Consensus        13 ~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~w   88 (106)
                      ...++++-+.+|. +|+++.+|.|+|||-...+.    ++-..+++.+.-+.||           +||++.+.. .+.++
T Consensus       578 ~~Fs~~aTt~~G~-iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DG-----------kwilaTc~t-yLlLi  644 (794)
T PF08553_consen  578 NNFSCFATTEDGY-IAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADG-----------KWILATCKT-YLLLI  644 (794)
T ss_pred             CCceEEEecCCce-EEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCC-----------cEEEEeecc-eEEEE
Confidence            3677777778887 99999999999999543333    4445678889999999           666655443 45555


Q ss_pred             EC
Q 036317           89 SA   90 (106)
Q Consensus        89 d~   90 (106)
                      +.
T Consensus       645 ~t  646 (794)
T PF08553_consen  645 DT  646 (794)
T ss_pred             EE
Confidence            54

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PRK02888 nitrous-oxide reductase; Validated

Probab=94.63  E-value=0.36  Score=38.25  Aligned_cols=49  Identities=16%  Similarity=0.235  Sum_probs=33.1

Q ss_pred             CeEEEEEcCC----C-ce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecC-CCcEEEEECCCCC
Q 036317           34 GHIHVLHSFQ----G-TL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSG-DGSVYAWSARSGK   94 (106)
Q Consensus        34 ~~i~l~d~~~----~-~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~-d~~i~~wd~~~~~   94 (106)
                      +.+.++|..+    + ++    +.. ..+-.+.+||||           ++++.++. +.+|.+.|+++.+
T Consensus       296 n~V~VID~~t~~~~~~~v~~yIPVG-KsPHGV~vSPDG-----------kylyVanklS~tVSVIDv~k~k  354 (635)
T PRK02888        296 SKVPVVDGRKAANAGSALTRYVPVP-KNPHGVNTSPDG-----------KYFIANGKLSPTVTVIDVRKLD  354 (635)
T ss_pred             CEEEEEECCccccCCcceEEEEECC-CCccceEECCCC-----------CEEEEeCCCCCcEEEEEChhhh
Confidence            5577778776    2 22    211 234458899999           87665554 7899999998754

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=94.56  E-value=0.081  Score=35.60  Aligned_cols=66  Identities=24%  Similarity=0.272  Sum_probs=43.1

Q ss_pred             CCCCCeEEEEeCCCeEEEEEcCCCce---eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEEECCCCCCCc
Q 036317           21 SNDGRLMLLTTLEGHIHVLHSFQGTL---PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSARSGKEPP   97 (106)
Q Consensus        21 spdg~~l~~~~~~~~i~l~d~~~~~~---~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd~~~~~~v~   97 (106)
                      .+++.++++++.++.+..+|+.+|+.   ..........-...++            .++.+..++.++.+|.++|+.+.
T Consensus        33 ~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~------------~v~v~~~~~~l~~~d~~tG~~~W  100 (238)
T PF13360_consen   33 VPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVVDGG------------RVYVGTSDGSLYALDAKTGKVLW  100 (238)
T ss_dssp             EEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEEETT------------EEEEEETTSEEEEEETTTSCEEE
T ss_pred             EEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeeeccc------------ccccccceeeeEecccCCcceee
Confidence            34667788888999999999999987   1112221111122233            44455577799999999998544


Q ss_pred             E
Q 036317           98 V   98 (106)
Q Consensus        98 ~   98 (106)
                      .
T Consensus       101 ~  101 (238)
T PF13360_consen  101 S  101 (238)
T ss_dssp             E
T ss_pred             e
Confidence            4

...

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=94.45  E-value=0.18  Score=38.30  Aligned_cols=88  Identities=14%  Similarity=0.223  Sum_probs=45.5

Q ss_pred             CeeEEEECCCCCeEEEEeCCCeEEEEEcCCCceeccCCCcEEEEEecCCcceeeee------------------------
Q 036317           14 DANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTLPVSHNSTLEASFSQHLSLVALSV------------------------   69 (106)
Q Consensus        14 ~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~~~~~~~~~~~~fs~d~~~~~~~~------------------------   69 (106)
                      ....+.++|+|+++++ +.+++..|+.....+-. ..+.....+|++.+++..+..                        
T Consensus        34 ~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k-~~G~g~~~vw~~~n~yAv~~~~~~I~I~kn~~~~~~k~i~~~~~~  111 (443)
T PF04053_consen   34 YPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNK-AFGSGLSFVWSSRNRYAVLESSSTIKIYKNFKNEVVKSIKLPFSV  111 (443)
T ss_dssp             --SEEEE-TTSSEEEE-EETTEEEEEETTTTEEE-EEEE-SEEEE-TSSEEEEE-TTS-EEEEETTEE-TT-----SS-E
T ss_pred             CCeeEEECCCCCEEEE-EcCCEEEEEEccCCccc-ccCceeEEEEecCccEEEEECCCeEEEEEcCccccceEEcCCccc
Confidence            4679999999998877 67888888775333321 122233455555544333210                        


Q ss_pred             --eecccEEEEecCCCcEEEEECCCCC--------CCcEEEeCCC
Q 036317           70 --LILRSWVLEGSGDGSVYAWSARSGK--------EPPVIKWAPG  104 (106)
Q Consensus        70 --~~~~~~i~t~s~d~~i~~wd~~~~~--------~v~~i~~sp~  104 (106)
                        +.... ++....++.|.+||+++++        .|+.+-|+++
T Consensus       112 ~~If~G~-LL~~~~~~~i~~yDw~~~~~i~~i~v~~vk~V~Ws~~  155 (443)
T PF04053_consen  112 EKIFGGN-LLGVKSSDFICFYDWETGKLIRRIDVSAVKYVIWSDD  155 (443)
T ss_dssp             EEEE-SS-SEEEEETTEEEEE-TTT--EEEEESS-E-EEEEE-TT
T ss_pred             ceEEcCc-EEEEECCCCEEEEEhhHcceeeEEecCCCcEEEEECC
Confidence              11112 2223345589999999998        3577778775

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=94.40  E-value=0.26  Score=35.87  Aligned_cols=24  Identities=17%  Similarity=0.270  Sum_probs=19.7

Q ss_pred             CCCeEEEEeCCCeEEEEEcCCCce
Q 036317           23 DGRLMLLTTLEGHIHVLHSFQGTL   46 (106)
Q Consensus        23 dg~~l~~~~~~~~i~l~d~~~~~~   46 (106)
                      ++..+++++.++.+.-+|..+|+.
T Consensus        64 ~~~~v~v~~~~g~v~a~d~~tG~~   87 (377)
T TIGR03300        64 AGGKVYAADADGTVVALDAETGKR   87 (377)
T ss_pred             ECCEEEEECCCCeEEEEEccCCcE
Confidence            356688888889999999988887

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=93.87  E-value=0.59  Score=39.42  Aligned_cols=55  Identities=24%  Similarity=0.205  Sum_probs=45.0

Q ss_pred             CCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce---eccCCCcEEEEEecCCcceee
Q 036317           13 SDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL---PVSHNSTLEASFSQHLSLVAL   67 (106)
Q Consensus        13 ~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~---~~~~~~~~~~~fs~d~~~~~~   67 (106)
                      ++|.++.|--+++-++.+...|.+.+.|..+...   ..-.+.+..++||||+.++++
T Consensus        69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~l  126 (1265)
T KOG1920|consen   69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLAL  126 (1265)
T ss_pred             cceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEE
Confidence            5899999999999999999999999999888776   223456778999999955554

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=93.70  E-value=0.29  Score=37.40  Aligned_cols=35  Identities=14%  Similarity=0.197  Sum_probs=31.7

Q ss_pred             CCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce
Q 036317           12 VSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL   46 (106)
Q Consensus        12 ~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~   46 (106)
                      ++...+++|+|+|..+...+.|..|++++..+|++
T Consensus       201 Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGkl  235 (558)
T KOG0882|consen  201 KTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKL  235 (558)
T ss_pred             ccCccceEEccccCcccccCcccEEEEEEeccchh
Confidence            45788999999999999999999999999998886

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=93.64  E-value=1.1  Score=34.60  Aligned_cols=66  Identities=15%  Similarity=0.234  Sum_probs=40.9

Q ss_pred             CCCCeEEEEeCCCeEEEEEcCC----Cce-----ec--------------c-------CCCcEEEEEec----CCcceee
Q 036317           22 NDGRLMLLTTLEGHIHVLHSFQ----GTL-----PV--------------S-------HNSTLEASFSQ----HLSLVAL   67 (106)
Q Consensus        22 pdg~~l~~~~~~~~i~l~d~~~----~~~-----~~--------------~-------~~~~~~~~fs~----d~~~~~~   67 (106)
                      ++...++++..||.+.......    +..     ..              .       .+.......++    +.     
T Consensus       156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  230 (547)
T PF11715_consen  156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDD-----  230 (547)
T ss_dssp             -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETT-----
T ss_pred             cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCC-----
Confidence            4777788889999888777543    211     00              0       11122344444    45     


Q ss_pred             eeeecccEEEEecCCCcEEEEECCCCCCCcE
Q 036317           68 SVLILRSWVLEGSGDGSVYAWSARSGKEPPV   98 (106)
Q Consensus        68 ~~~~~~~~i~t~s~d~~i~~wd~~~~~~v~~   98 (106)
                            .++++-+.|+++++||+++++.+..
T Consensus       231 ------~~l~tl~~D~~LRiW~l~t~~~~~~  255 (547)
T PF11715_consen  231 ------TFLFTLSRDHTLRIWSLETGQCLAT  255 (547)
T ss_dssp             ------TEEEEEETTSEEEEEETTTTCEEEE
T ss_pred             ------CEEEEEeCCCeEEEEECCCCeEEEE
Confidence                  8999999999999999999985433

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=93.38  E-value=0.053  Score=42.83  Aligned_cols=92  Identities=15%  Similarity=0.220  Sum_probs=60.4

Q ss_pred             CceeeecCC-CCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce---eccCCCcEEEEEec-CCcceeeeeeecccEE
Q 036317            2 PFDIFSDGG-DVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL---PVSHNSTLEASFSQ-HLSLVALSVLILRSWV   76 (106)
Q Consensus         2 ~~~~~~~~~-~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~---~~~~~~~~~~~fs~-d~~~~~~~~~~~~~~i   76 (106)
                      |++.+.+.+ .-...+++.|-.|.+.+++|...+.++++|......   ......+..++.+| ..           .|+
T Consensus       143 Pke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~-----------nY~  211 (783)
T KOG1008|consen  143 PKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSP-----------NYF  211 (783)
T ss_pred             CccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCC-----------Cce
Confidence            455555544 223667888888889888888888999999864333   22233344466666 45           565


Q ss_pred             EEecCCCcEEEEEC-CCCC---------------CCcEEEeCCCC
Q 036317           77 LEGSGDGSVYAWSA-RSGK---------------EPPVIKWAPGS  105 (106)
Q Consensus        77 ~t~s~d~~i~~wd~-~~~~---------------~v~~i~~sp~~  105 (106)
                      ++- .|+.|.+||. ..-+               .+..++|.|..
T Consensus       212 cs~-~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtr  255 (783)
T KOG1008|consen  212 CSN-SDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTR  255 (783)
T ss_pred             ecc-ccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCC
Confidence            554 4889999993 2222               47788888864

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=93.28  E-value=1.2  Score=32.29  Aligned_cols=29  Identities=24%  Similarity=0.290  Sum_probs=22.5

Q ss_pred             CeeEEEECCCCCeEEEE-eCCCeEEEEEcC
Q 036317           14 DANEVKLSNDGRLMLLT-TLEGHIHVLHSF   42 (106)
Q Consensus        14 ~v~~v~~spdg~~l~~~-~~~~~i~l~d~~   42 (106)
                      --+.++|||||+.+..+ +..+.++-++..
T Consensus       164 ~~NGla~SpDg~tly~aDT~~~~i~r~~~d  193 (307)
T COG3386         164 IPNGLAFSPDGKTLYVADTPANRIHRYDLD  193 (307)
T ss_pred             ecCceEECCCCCEEEEEeCCCCeEEEEecC
Confidence            45789999999877766 455888888764

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=93.18  E-value=0.91  Score=37.65  Aligned_cols=66  Identities=14%  Similarity=0.181  Sum_probs=49.9

Q ss_pred             CCCeeEEEECCCCCeEEEEeCCCeEEEE----EcCCCce---eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCc
Q 036317           12 VSDANEVKLSNDGRLMLLTTLEGHIHVL----HSFQGTL---PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGS   84 (106)
Q Consensus        12 ~~~v~~v~~spdg~~l~~~~~~~~i~l~----d~~~~~~---~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~   84 (106)
                      .+.|.++++=+|..-+.++..+|.|.++    |..+...   -.-...+.+++||||+           ..++-...+++
T Consensus        75 ~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~-----------Ella~vT~~~~  143 (928)
T PF04762_consen   75 NDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDE-----------ELLALVTGEGN  143 (928)
T ss_pred             CCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCc-----------CEEEEEeCCCE
Confidence            4589999999999989999999999999    6655555   2233467789999999           66666655665


Q ss_pred             EEEE
Q 036317           85 VYAW   88 (106)
Q Consensus        85 i~~w   88 (106)
                      +.+-
T Consensus       144 l~~m  147 (928)
T PF04762_consen  144 LLLM  147 (928)
T ss_pred             EEEE
Confidence            5554

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=93.12  E-value=1.3  Score=32.12  Aligned_cols=36  Identities=25%  Similarity=0.372  Sum_probs=30.2

Q ss_pred             CCeeEEEECCCCCeEEEEe-CCCeEEEEEcCCCceec
Q 036317           13 SDANEVKLSNDGRLMLLTT-LEGHIHVLHSFQGTLPV   48 (106)
Q Consensus        13 ~~v~~v~~spdg~~l~~~~-~~~~i~l~d~~~~~~~~   48 (106)
                      +-+-+|+++++|..+++++ ..+.+.+||..++++..
T Consensus       217 ~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~  253 (305)
T PF07433_consen  217 GYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLG  253 (305)
T ss_pred             CceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEee
Confidence            4688999999999887666 66888999999999843

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=93.12  E-value=1.9  Score=30.18  Aligned_cols=80  Identities=19%  Similarity=0.144  Sum_probs=49.1

Q ss_pred             CeeEEEECCCCCeEEEEe---CCCeEEEEEcCCCceec-cCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEEE
Q 036317           14 DANEVKLSNDGRLMLLTT---LEGHIHVLHSFQGTLPV-SHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWS   89 (106)
Q Consensus        14 ~v~~v~~spdg~~l~~~~---~~~~i~l~d~~~~~~~~-~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd   89 (106)
                      .+.+.++|+||+.++...   ....+.++......... .-......+|++++           ........+....++.
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g~~l~~PS~d~~g-----------~~W~v~~~~~~~~~~~   93 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTGGSLTRPSWDPDG-----------WVWTVDDGSGGVRVVR   93 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccCCccccccccCCC-----------CEEEEEcCCCceEEEE
Confidence            688999999999887766   34455555433222221 22355678999998           6555444444555552


Q ss_pred             -CCCCC-------------CCcEEEeCCC
Q 036317           90 -ARSGK-------------EPPVIKWAPG  104 (106)
Q Consensus        90 -~~~~~-------------~v~~i~~sp~  104 (106)
                       ..+++             .|..+++||+
T Consensus        94 ~~~~g~~~~~~v~~~~~~~~I~~l~vSpD  122 (253)
T PF10647_consen   94 DSASGTGEPVEVDWPGLRGRITALRVSPD  122 (253)
T ss_pred             ecCCCcceeEEecccccCCceEEEEECCC
Confidence             22332             5778888885

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=92.81  E-value=0.18  Score=41.47  Aligned_cols=69  Identities=14%  Similarity=0.131  Sum_probs=46.9

Q ss_pred             CCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEEECCCCC
Q 036317           22 NDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSARSGK   94 (106)
Q Consensus        22 pdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd~~~~~   94 (106)
                      .+++++.++...|+|-+-|..+.+.    ..|.+.+  ..|+-.|++|+--..+.|++-+.  .|..|+|||++..+
T Consensus       185 ~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~si--SDfDv~GNlLitCG~S~R~~~l~--~D~FvkVYDLRmmr  257 (1118)
T KOG1275|consen  185 YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSI--SDFDVQGNLLITCGYSMRRYNLA--MDPFVKVYDLRMMR  257 (1118)
T ss_pred             ecCcEEEeecccceEEeecCCcCceeeeeeccccce--eeeeccCCeEEEeeccccccccc--ccchhhhhhhhhhh
Confidence            4678888999999999999988776    3345554  56787774444333333232222  37889999999876

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=92.74  E-value=0.63  Score=33.50  Aligned_cols=60  Identities=22%  Similarity=0.280  Sum_probs=45.7

Q ss_pred             CCeEEEEeCCCeEEEEEcCCCce---eccCCCc-EEEEEecCCcceeeeeeecccEEEEecCCCcEEEEECCCCC
Q 036317           24 GRLMLLTTLEGHIHVLHSFQGTL---PVSHNST-LEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSARSGK   94 (106)
Q Consensus        24 g~~l~~~~~~~~i~l~d~~~~~~---~~~~~~~-~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd~~~~~   94 (106)
                      |++++.++..+.+++.+..+|..   ....+.+ ..+...+++           ..|.+|+.|++.+.-|.++-.
T Consensus        63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~-----------glIycgshd~~~yalD~~~~~  126 (354)
T KOG4649|consen   63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDG-----------GLIYCGSHDGNFYALDPKTYG  126 (354)
T ss_pred             CCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCC-----------ceEEEecCCCcEEEecccccc
Confidence            66788889999999999988865   1111222 246678888           999999999999999988754

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=92.70  E-value=0.73  Score=30.89  Aligned_cols=66  Identities=18%  Similarity=0.203  Sum_probs=43.1

Q ss_pred             CCCeEEEEeCCCeEEEEEcCCCce--e-cc-C----CCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEEECCCCC
Q 036317           23 DGRLMLLTTLEGHIHVLHSFQGTL--P-VS-H----NSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSARSGK   94 (106)
Q Consensus        23 dg~~l~~~~~~~~i~l~d~~~~~~--~-~~-~----~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd~~~~~   94 (106)
                      ++..+++.+.++.+..+|..+|+.  . .. .    ..........++           ..++.+..++.+..+|+++|+
T Consensus        75 ~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~g~l~~~d~~tG~  143 (238)
T PF13360_consen   75 DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDG-----------DRLYVGTSSGKLVALDPKTGK  143 (238)
T ss_dssp             ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEET-----------TEEEEEETCSEEEEEETTTTE
T ss_pred             cccccccccceeeeEecccCCcceeeeeccccccccccccccCceEec-----------CEEEEEeccCcEEEEecCCCc
Confidence            344566777888999999999988  2 11 1    111122333336           677777778999999999998


Q ss_pred             CCcEE
Q 036317           95 EPPVI   99 (106)
Q Consensus        95 ~v~~i   99 (106)
                      .+...
T Consensus       144 ~~w~~  148 (238)
T PF13360_consen  144 LLWKY  148 (238)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            44433

...

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=92.64  E-value=1.9  Score=31.92  Aligned_cols=68  Identities=12%  Similarity=0.226  Sum_probs=50.6

Q ss_pred             CeeEEEECCCCCeEEEEeC---CCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEec-CCCcE
Q 036317           14 DANEVKLSNDGRLMLLTTL---EGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGS-GDGSV   85 (106)
Q Consensus        14 ~v~~v~~spdg~~l~~~~~---~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s-~d~~i   85 (106)
                      .-..++++|+++++.++..   ++.+.+.|..+++.    +... ....+.++|+|           .++.... .++.+
T Consensus       117 ~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~-~P~~~a~~p~g-----------~~vyv~~~~~~~v  184 (381)
T COG3391         117 GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGN-TPTGVAVDPDG-----------NKVYVTNSDDNTV  184 (381)
T ss_pred             CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCC-CcceEEECCCC-----------CeEEEEecCCCeE
Confidence            4568999999988877655   68999999988877    2222 23779999999           7555554 67788


Q ss_pred             EEEECCCC
Q 036317           86 YAWSARSG   93 (106)
Q Consensus        86 ~~wd~~~~   93 (106)
                      .+.|.+..
T Consensus       185 ~vi~~~~~  192 (381)
T COG3391         185 SVIDTSGN  192 (381)
T ss_pred             EEEeCCCc
Confidence            88886654

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=92.61  E-value=1.5  Score=37.10  Aligned_cols=28  Identities=18%  Similarity=0.191  Sum_probs=24.1

Q ss_pred             CCeeEEEECCCCCeEEEEeCCCeEEEEE
Q 036317           13 SDANEVKLSNDGRLMLLTTLEGHIHVLH   40 (106)
Q Consensus        13 ~~v~~v~~spdg~~l~~~~~~~~i~l~d   40 (106)
                      +.|..++||||++.++..+.++++.+-.
T Consensus       110 ~GI~aaswS~Dee~l~liT~~~tll~mT  137 (1265)
T KOG1920|consen  110 NGISAASWSPDEELLALITGRQTLLFMT  137 (1265)
T ss_pred             CceEEEeecCCCcEEEEEeCCcEEEEEe
Confidence            4899999999999999999888886543

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=92.47  E-value=1  Score=34.09  Aligned_cols=71  Identities=20%  Similarity=0.116  Sum_probs=46.1

Q ss_pred             CCeeEEEECCCCCeEEEEe---CC-CeEEEEEcCCCce---eccCCCcEEEEEecCCcceeeeeeecccEEE-EecCCC-
Q 036317           13 SDANEVKLSNDGRLMLLTT---LE-GHIHVLHSFQGTL---PVSHNSTLEASFSQHLSLVALSVLILRSWVL-EGSGDG-   83 (106)
Q Consensus        13 ~~v~~v~~spdg~~l~~~~---~~-~~i~l~d~~~~~~---~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~-t~s~d~-   83 (106)
                      ..+..=+|+|+++.++-..   .. ..+.++|+.+++.   -...+......|+|||           ++|+ +...|+ 
T Consensus       193 ~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG-----------~~l~f~~~rdg~  261 (425)
T COG0823         193 SLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDG-----------SKLAFSSSRDGS  261 (425)
T ss_pred             cceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCC-----------CEEEEEECCCCC
Confidence            3666778999998765442   22 3588889988776   1222333457999999           5554 344455 


Q ss_pred             -cEEEEECCCCC
Q 036317           84 -SVYAWSARSGK   94 (106)
Q Consensus        84 -~i~~wd~~~~~   94 (106)
                       .|++.|+..++
T Consensus       262 ~~iy~~dl~~~~  273 (425)
T COG0823         262 PDIYLMDLDGKN  273 (425)
T ss_pred             ccEEEEcCCCCc
Confidence             56777777665

>PRK10115 protease 2; Provisional

Probab=92.47  E-value=1.9  Score=34.56  Aligned_cols=76  Identities=9%  Similarity=-0.060  Sum_probs=47.4

Q ss_pred             CeeEEEECCCCCeEEEEeCC-----CeEEEEEcCCCce--eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEE
Q 036317           14 DANEVKLSNDGRLMLLTTLE-----GHIHVLHSFQGTL--PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVY   86 (106)
Q Consensus        14 ~v~~v~~spdg~~l~~~~~~-----~~i~l~d~~~~~~--~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~   86 (106)
                      .+..+.+||||++++.+...     .++++.|..+|+.  ..-...-..++|++|++.+++..... .    .-....|+
T Consensus       128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~~~~~w~~D~~~~~y~~~~~-~----~~~~~~v~  202 (686)
T PRK10115        128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVEPSFVWANDSWTFYYVRKHP-V----TLLPYQVW  202 (686)
T ss_pred             EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcceEEEEeeCCCEEEEEEecC-C----CCCCCEEE
Confidence            58889999999988876433     4678889988874  11111113589999994444433310 0    01224677


Q ss_pred             EEECCCCC
Q 036317           87 AWSARSGK   94 (106)
Q Consensus        87 ~wd~~~~~   94 (106)
                      .+++.+++
T Consensus       203 ~h~lgt~~  210 (686)
T PRK10115        203 RHTIGTPA  210 (686)
T ss_pred             EEECCCCh
Confidence            77777763

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=92.39  E-value=0.75  Score=37.51  Aligned_cols=79  Identities=11%  Similarity=0.045  Sum_probs=54.9

Q ss_pred             CeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeee-ecccEEEEecCCCcEEEE
Q 036317           14 DANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVL-ILRSWVLEGSGDGSVYAW   88 (106)
Q Consensus        14 ~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~-~~~~~i~t~s~d~~i~~w   88 (106)
                      .-++++|+|.|- ++- +....|.+.|..+.+.    ..+...+..+.|.|-..--.+-.. .+.-.|++++..|.|.+|
T Consensus        17 N~~A~Dw~~~GL-iAy-gshslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~   94 (1062)
T KOG1912|consen   17 NRNAADWSPSGL-IAY-GSHSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILV   94 (1062)
T ss_pred             cccccccCccce-EEE-ecCceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEE
Confidence            466889999995 333 3456688899988776    335556777888876522222221 244678888999999999


Q ss_pred             ECCCCC
Q 036317           89 SARSGK   94 (106)
Q Consensus        89 d~~~~~   94 (106)
                      |...+.
T Consensus        95 d~~~~s  100 (1062)
T KOG1912|consen   95 DFVLAS  100 (1062)
T ss_pred             Eehhhh
Confidence            998875

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=92.39  E-value=0.66  Score=23.88  Aligned_cols=34  Identities=18%  Similarity=0.041  Sum_probs=23.8

Q ss_pred             CcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEEECCCC
Q 036317           52 STLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSARSG   93 (106)
Q Consensus        52 ~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd~~~~   93 (106)
                      .+..+.|||+.        .....++.+-.-+.|.++|++++
T Consensus         2 AvR~~kFsP~~--------~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    2 AVRCCKFSPEP--------GGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CeEEEEeCCCC--------CcccEEEEEccCCeEEEEEcccC
Confidence            35568999877        00026666666789999999964

It contains a characteristic DLL sequence motif.

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=92.32  E-value=0.4  Score=38.87  Aligned_cols=71  Identities=15%  Similarity=0.182  Sum_probs=51.8

Q ss_pred             CeeEEEECCCC--CeEEEEeCCCeEEEEEcCCC--c-e----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCc
Q 036317           14 DANEVKLSNDG--RLMLLTTLEGHIHVLHSFQG--T-L----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGS   84 (106)
Q Consensus        14 ~v~~v~~spdg--~~l~~~~~~~~i~l~d~~~~--~-~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~   84 (106)
                      .|-+++|||+.  .+.++....+.-.+|+...-  + +    .++...++...|.|+.          +..+++++.|-.
T Consensus        69 ~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~----------pdVlatcsvdt~  138 (1081)
T KOG0309|consen   69 QVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQH----------PDVLATCSVDTY  138 (1081)
T ss_pred             hhcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCC----------Ccceeecccccc
Confidence            67889999763  45556666666667876422  1 1    4455567788999887          467889999999


Q ss_pred             EEEEECCCCC
Q 036317           85 VYAWSARSGK   94 (106)
Q Consensus        85 i~~wd~~~~~   94 (106)
                      +..||+++..
T Consensus       139 vh~wd~rSp~  148 (1081)
T KOG0309|consen  139 VHAWDMRSPH  148 (1081)
T ss_pred             ceeeeccCCC
Confidence            9999999875

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=92.29  E-value=1.8  Score=32.45  Aligned_cols=80  Identities=14%  Similarity=0.089  Sum_probs=46.1

Q ss_pred             CeeEEEECCCCCeEEEEeCCCeEEEEEcCCCcee-------------------ccCCCcEEE----------EEe-----
Q 036317           14 DANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTLP-------------------VSHNSTLEA----------SFS-----   59 (106)
Q Consensus        14 ~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~~-------------------~~~~~~~~~----------~fs-----   59 (106)
                      +|+.+.|+++-.-++++...|++-||-....+..                   ...+.++.+          .|.     
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~   82 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL   82 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence            5889999999777999999999998864322110                   000001110          011     


Q ss_pred             --cCCcceeeeeeecccEEEEecCCCcEEEEECCCCC
Q 036317           60 --QHLSLVALSVLILRSWVLEGSGDGSVYAWSARSGK   94 (106)
Q Consensus        60 --~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd~~~~~   94 (106)
                        ..|+-.|+++. .--|++.|.++|++.|.|++...
T Consensus        83 ~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPa  118 (395)
T PF08596_consen   83 DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPA  118 (395)
T ss_dssp             ---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTE
T ss_pred             eccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCe
Confidence              12333333332 23699999999999999997554

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=92.12  E-value=0.94  Score=34.50  Aligned_cols=55  Identities=18%  Similarity=0.164  Sum_probs=32.8

Q ss_pred             CCeEEEEeCCCeEEEEEcCCCce--eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEEECC
Q 036317           24 GRLMLLTTLEGHIHVLHSFQGTL--PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSAR   91 (106)
Q Consensus        24 g~~l~~~~~~~~i~l~d~~~~~~--~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd~~   91 (106)
                      |..++..+. +.+.+||+.++++  .-....+..+.|++++           .+|+-.+++ ++++.+..
T Consensus       117 G~LL~~~~~-~~i~~yDw~~~~~i~~i~v~~vk~V~Ws~~g-----------~~val~t~~-~i~il~~~  173 (443)
T PF04053_consen  117 GNLLGVKSS-DFICFYDWETGKLIRRIDVSAVKYVIWSDDG-----------ELVALVTKD-SIYILKYN  173 (443)
T ss_dssp             SSSEEEEET-TEEEEE-TTT--EEEEESS-E-EEEEE-TTS-----------SEEEEE-S--SEEEEEE-
T ss_pred             CcEEEEECC-CCEEEEEhhHcceeeEEecCCCcEEEEECCC-----------CEEEEEeCC-eEEEEEec
Confidence            776665554 4899999999988  2233336789999999           777777665 66666544

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=92.08  E-value=0.73  Score=22.41  Aligned_cols=21  Identities=24%  Similarity=0.378  Sum_probs=14.6

Q ss_pred             CCeeEEEECCCCCeEEEEeCC
Q 036317           13 SDANEVKLSNDGRLMLLTTLE   33 (106)
Q Consensus        13 ~~v~~v~~spdg~~l~~~~~~   33 (106)
                      +.-..-.|||||++++-++..
T Consensus         9 ~~~~~p~~SpDGk~i~f~s~~   29 (39)
T PF07676_consen    9 GDDGSPAWSPDGKYIYFTSNR   29 (39)
T ss_dssp             SSEEEEEE-TTSSEEEEEEEC
T ss_pred             ccccCEEEecCCCEEEEEecC
Confidence            356678899999988766544

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PRK13616 lipoprotein LpqB; Provisional

Probab=92.02  E-value=1.1  Score=35.33  Aligned_cols=50  Identities=16%  Similarity=0.236  Sum_probs=34.5

Q ss_pred             CCCeeEEEECCCCCeEEEEeCCCeEEE---EEcCCCce---------eccCCCcEEEEEecCC
Q 036317           12 VSDANEVKLSNDGRLMLLTTLEGHIHV---LHSFQGTL---------PVSHNSTLEASFSQHL   62 (106)
Q Consensus        12 ~~~v~~v~~spdg~~l~~~~~~~~i~l---~d~~~~~~---------~~~~~~~~~~~fs~d~   62 (106)
                      .+.|.+++|||||+.++... ++++++   .....|..         .........+.|..++
T Consensus       447 ~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~  508 (591)
T PRK13616        447 PGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGD  508 (591)
T ss_pred             CCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccceEecCC
Confidence            34799999999999998877 467776   45445543         1111224668899998

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=91.99  E-value=4  Score=30.66  Aligned_cols=51  Identities=16%  Similarity=0.165  Sum_probs=35.8

Q ss_pred             CCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce-----eccCCCcEEEEEecCC
Q 036317           12 VSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL-----PVSHNSTLEASFSQHL   62 (106)
Q Consensus        12 ~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~-----~~~~~~~~~~~fs~d~   62 (106)
                      .+++..+++||+|++++.-..++.+.+....-.+.     ......+..+.|.-+.
T Consensus       216 ~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~d  271 (410)
T PF04841_consen  216 DGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGND  271 (410)
T ss_pred             CCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCC
Confidence            35899999999999999999999999887543333     1222344456666444

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=91.35  E-value=2.1  Score=31.09  Aligned_cols=75  Identities=13%  Similarity=0.210  Sum_probs=55.6

Q ss_pred             CCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCcee-----ccCCCcEEEEEecCCcceeeeeeecccEEEEecCCC
Q 036317            9 GGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTLP-----VSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDG   83 (106)
Q Consensus         9 ~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~~-----~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~   83 (106)
                      .+....++++.|+|+.+.+.+..+.....++=...|++.     ........+.+.-++           +|+++--.++
T Consensus        82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n-----------~fvi~dER~~  150 (316)
T COG3204          82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGN-----------QFVIVDERDR  150 (316)
T ss_pred             ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCC-----------EEEEEehhcc
Confidence            344557999999999999998888887777666678771     112233457778888           8888888888


Q ss_pred             cEEEEECCCCC
Q 036317           84 SVYAWSARSGK   94 (106)
Q Consensus        84 ~i~~wd~~~~~   94 (106)
                      .+++..+..+.
T Consensus       151 ~l~~~~vd~~t  161 (316)
T COG3204         151 ALYLFTVDADT  161 (316)
T ss_pred             eEEEEEEcCCc
Confidence            88888777653

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=91.27  E-value=0.95  Score=33.93  Aligned_cols=66  Identities=14%  Similarity=0.128  Sum_probs=37.0

Q ss_pred             EEECCCCCeEEEEeC---CCeEEEEEcCCCceec---cC-CCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEEEC
Q 036317           18 VKLSNDGRLMLLTTL---EGHIHVLHSFQGTLPV---SH-NSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSA   90 (106)
Q Consensus        18 v~~spdg~~l~~~~~---~~~i~l~d~~~~~~~~---~~-~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd~   90 (106)
                      =.|.+||++|+.++.   ..++++.|+.+++..+   .. ........+|++           +.++-...+..++--|+
T Consensus        41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~-----------~~~~Yv~~~~~l~~vdL  109 (386)
T PF14583_consen   41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDD-----------RALYYVKNGRSLRRVDL  109 (386)
T ss_dssp             --B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTS-----------SEEEEEETTTEEEEEET
T ss_pred             CCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCC-----------CeEEEEECCCeEEEEEC
Confidence            357899999988775   5788889999998811   11 111135567888           76654434457888888


Q ss_pred             CCCC
Q 036317           91 RSGK   94 (106)
Q Consensus        91 ~~~~   94 (106)
                      ++.+
T Consensus       110 ~T~e  113 (386)
T PF14583_consen  110 DTLE  113 (386)
T ss_dssp             TT--
T ss_pred             CcCc
Confidence            8876

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=91.26  E-value=0.83  Score=33.27  Aligned_cols=54  Identities=13%  Similarity=0.194  Sum_probs=37.5

Q ss_pred             CCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce-----ec---------------c-CCCcEEEEEecCCcceee
Q 036317           13 SDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL-----PV---------------S-HNSTLEASFSQHLSLVAL   67 (106)
Q Consensus        13 ~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~-----~~---------------~-~~~~~~~~fs~d~~~~~~   67 (106)
                      ..+....|||||++++... ++.+++.+..++..     .+               . .+.-..+-||||+++||+
T Consensus        43 ~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~  117 (353)
T PF00930_consen   43 PKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAF  117 (353)
T ss_dssp             TTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEE
T ss_pred             cccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEE
Confidence            4788999999999887765 57899998776654     01               0 122244789999999984

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=91.05  E-value=3.1  Score=27.33  Aligned_cols=35  Identities=11%  Similarity=0.101  Sum_probs=23.5

Q ss_pred             CcEEEEEecCCcceeeeeeec-ccEEEEecCCCcEEEEECCC
Q 036317           52 STLEASFSQHLSLVALSVLIL-RSWVLEGSGDGSVYAWSARS   92 (106)
Q Consensus        52 ~~~~~~fs~d~~~~~~~~~~~-~~~i~t~s~d~~i~~wd~~~   92 (106)
                      .+..++|||-|      +... +-.|+.-..++.+.+|.-..
T Consensus        87 ~vv~~aWSP~G------l~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   87 QVVSAAWSPSG------LGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             cEEEEEECCCC------CCCCCceEEEEEcCCCeEEEEecCC
Confidence            44568888877      2222 24566667788999998773

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=90.85  E-value=3  Score=31.06  Aligned_cols=73  Identities=14%  Similarity=0.139  Sum_probs=47.6

Q ss_pred             CCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce--------------------------------------------
Q 036317           11 DVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL--------------------------------------------   46 (106)
Q Consensus        11 ~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~--------------------------------------------   46 (106)
                      |..++..+-|+-.-+.+++.+.|+.+..-=.+.++.                                            
T Consensus       113 h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~  192 (404)
T KOG1409|consen  113 HQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITT  192 (404)
T ss_pred             hhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEE
Confidence            345788888888888888888887664222222211                                            


Q ss_pred             -eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEEECCCCC
Q 036317           47 -PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSARSGK   94 (106)
Q Consensus        47 -~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd~~~~~   94 (106)
                       ..+.+.+...+|.+..           +.+.+|.+|..+.+||+--.+
T Consensus       193 ~~~h~~~~~~l~Wd~~~-----------~~LfSg~~d~~vi~wdigg~~  230 (404)
T KOG1409|consen  193 FNGHTGEVTCLKWDPGQ-----------RLLFSGASDHSVIMWDIGGRK  230 (404)
T ss_pred             EcCcccceEEEEEcCCC-----------cEEEeccccCceEEEeccCCc
Confidence             1122333334444444           899999999999999997554

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=90.57  E-value=1.4  Score=32.46  Aligned_cols=74  Identities=14%  Similarity=0.119  Sum_probs=43.7

Q ss_pred             eeEEEECCCCCeEEEEeCC----------CeEEEEEcCCCce--ecc-CCCcEEEEEecCCcceeeeeeeccc-EEEEe-
Q 036317           15 ANEVKLSNDGRLMLLTTLE----------GHIHVLHSFQGTL--PVS-HNSTLEASFSQHLSLVALSVLILRS-WVLEG-   79 (106)
Q Consensus        15 v~~v~~spdg~~l~~~~~~----------~~i~l~d~~~~~~--~~~-~~~~~~~~fs~d~~~~~~~~~~~~~-~i~t~-   79 (106)
                      ..-+++++..+.|.+-.+.          .+|.++|..+++.  .-. ...+.++..+.|.           + .+.+. 
T Consensus       240 ~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~-----------~P~L~~~~  308 (342)
T PF06433_consen  240 WQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDD-----------KPLLYALS  308 (342)
T ss_dssp             SS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSS-----------S-EEEEEE
T ss_pred             eeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCC-----------CcEEEEEc
Confidence            3456776655444433222          3677888888876  111 1234467888888           6 34333 


Q ss_pred             cCCCcEEEEECCCCCCCcEE
Q 036317           80 SGDGSVYAWSARSGKEPPVI   99 (106)
Q Consensus        80 s~d~~i~~wd~~~~~~v~~i   99 (106)
                      ..++.+.++|..+|+.++.+
T Consensus       309 ~~~~~l~v~D~~tGk~~~~~  328 (342)
T PF06433_consen  309 AGDGTLDVYDAATGKLVRSI  328 (342)
T ss_dssp             TTTTEEEEEETTT--EEEEE
T ss_pred             CCCCeEEEEeCcCCcEEeeh
Confidence            45789999999999955544

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=90.36  E-value=1.5  Score=32.29  Aligned_cols=25  Identities=12%  Similarity=0.254  Sum_probs=20.4

Q ss_pred             cEEEEecCCCcEEEEECCCCCCCcE
Q 036317           74 SWVLEGSGDGSVYAWSARSGKEPPV   98 (106)
Q Consensus        74 ~~i~t~s~d~~i~~wd~~~~~~v~~   98 (106)
                      .+|+.++.||.+++.|.++|+.+..
T Consensus       336 g~l~v~~~~G~l~~ld~~tG~~~~~  360 (394)
T PRK11138        336 GYLVVGDSEGYLHWINREDGRFVAQ  360 (394)
T ss_pred             CEEEEEeCCCEEEEEECCCCCEEEE
Confidence            5678888999999999999984333

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=90.03  E-value=3.4  Score=28.85  Aligned_cols=49  Identities=16%  Similarity=0.253  Sum_probs=33.8

Q ss_pred             CeeEEEECCCCCeEEEEe---CCCeEEEEEcC---CCce----------eccCCCcEEEEEecCC
Q 036317           14 DANEVKLSNDGRLMLLTT---LEGHIHVLHSF---QGTL----------PVSHNSTLEASFSQHL   62 (106)
Q Consensus        14 ~v~~v~~spdg~~l~~~~---~~~~i~l~d~~---~~~~----------~~~~~~~~~~~fs~d~   62 (106)
                      .|.++.+||||..++...   .++++.+=-+.   .+..          ......+..+.|.+++
T Consensus       113 ~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~  177 (253)
T PF10647_consen  113 RITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDS  177 (253)
T ss_pred             ceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCC
Confidence            899999999999998877   34666654332   3311          1123456789999999

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=89.88  E-value=2.1  Score=31.52  Aligned_cols=60  Identities=18%  Similarity=0.266  Sum_probs=39.5

Q ss_pred             CCeEEEEeCCCeEEEEEcCCCce--ec-cCCCcEE-EEEecCCcceeeeeeecccEEEEecCCCcEEEEECCCCCCC
Q 036317           24 GRLMLLTTLEGHIHVLHSFQGTL--PV-SHNSTLE-ASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSARSGKEP   96 (106)
Q Consensus        24 g~~l~~~~~~~~i~l~d~~~~~~--~~-~~~~~~~-~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd~~~~~~v   96 (106)
                      +..+++++.++.++-+|..+|+.  .. ..+.+.. .... ++            .++.+..++.++.+|.++|+.+
T Consensus       120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v~-~~------------~v~v~~~~g~l~ald~~tG~~~  183 (394)
T PRK11138        120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVVS-DG------------LVLVHTSNGMLQALNESDGAVK  183 (394)
T ss_pred             CCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEEE-CC------------EEEEECCCCEEEEEEccCCCEe
Confidence            45577788889999999999987  21 1111111 1222 33            4555667889999999999833

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=89.69  E-value=4.8  Score=32.20  Aligned_cols=65  Identities=9%  Similarity=0.113  Sum_probs=46.4

Q ss_pred             CCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce-----eccCCCcEEEEE--ecCCcceeeeeeecccEEEEecCCCcE
Q 036317           13 SDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL-----PVSHNSTLEASF--SQHLSLVALSVLILRSWVLEGSGDGSV   85 (106)
Q Consensus        13 ~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~-----~~~~~~~~~~~f--s~d~~~~~~~~~~~~~~i~t~s~d~~i   85 (106)
                      ....-+.-|.-++..++.....++.|||...+..     ....+.+.++.|  .||+           +.|++.+-...|
T Consensus        30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~-----------qsiLaVGf~~~v   98 (631)
T PF12234_consen   30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDG-----------QSILAVGFPHHV   98 (631)
T ss_pred             CCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCC-----------CEEEEEEcCcEE
Confidence            3555666667778667767778999999988877     123455666555  4888           888888777777


Q ss_pred             EEE
Q 036317           86 YAW   88 (106)
Q Consensus        86 ~~w   88 (106)
                      .++
T Consensus        99 ~l~  101 (631)
T PF12234_consen   99 LLY  101 (631)
T ss_pred             EEE
Confidence            777

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=89.67  E-value=4.6  Score=29.31  Aligned_cols=66  Identities=15%  Similarity=0.102  Sum_probs=35.3

Q ss_pred             CCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCC-ce---eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEE
Q 036317           12 VSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQG-TL---PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYA   87 (106)
Q Consensus        12 ~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~-~~---~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~   87 (106)
                      .+.++.+.-++||++++++.......-||.-.. -.   .....++..+.|+|++           ...+.+ ..|.++.
T Consensus       144 ~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~-----------~lw~~~-~Gg~~~~  211 (302)
T PF14870_consen  144 SGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDG-----------NLWMLA-RGGQIQF  211 (302)
T ss_dssp             ---EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS------------EEEEE-TTTEEEE
T ss_pred             cceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCC-----------CEEEEe-CCcEEEE
Confidence            457889999999997777755555556664221 11   2344567789999998           544433 5556666


Q ss_pred             EE
Q 036317           88 WS   89 (106)
Q Consensus        88 wd   89 (106)
                      =+
T Consensus       212 s~  213 (302)
T PF14870_consen  212 SD  213 (302)
T ss_dssp             EE
T ss_pred             cc
Confidence            55

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=89.31  E-value=0.66  Score=34.25  Aligned_cols=44  Identities=20%  Similarity=0.174  Sum_probs=29.2

Q ss_pred             EEEEecCCcceeeeeeecccEEEEecCCCcEEEEECCCCC---------CCcEEEeCCC
Q 036317           55 EASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSARSGK---------EPPVIKWAPG  104 (106)
Q Consensus        55 ~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd~~~~~---------~v~~i~~sp~  104 (106)
                      ...+|||++++|+++-..      |++...+++.|+++|+         ....+.|.++
T Consensus       128 ~~~~Spdg~~la~~~s~~------G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d  180 (414)
T PF02897_consen  128 GFSVSPDGKRLAYSLSDG------GSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDD  180 (414)
T ss_dssp             EEEETTTSSEEEEEEEET------TSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTT
T ss_pred             eeeECCCCCEEEEEecCC------CCceEEEEEEECCCCcCcCCcccccccceEEEeCC
Confidence            578999995555443322      4444579999999998         1223777765

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.22  E-value=4  Score=31.74  Aligned_cols=55  Identities=11%  Similarity=0.219  Sum_probs=39.6

Q ss_pred             CCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce--------eccCCCcEEEEEecCCccee
Q 036317           11 DVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL--------PVSHNSTLEASFSQHLSLVA   66 (106)
Q Consensus        11 ~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~--------~~~~~~~~~~~fs~d~~~~~   66 (106)
                      ++++|.++.||+|.+.+++.-.+.++.+++-...+.        +.....+....|+.. ..+|
T Consensus        65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A  127 (657)
T KOG2377|consen   65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIA  127 (657)
T ss_pred             CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEE
Confidence            457999999999999999999999999998744332        222334566777744 3444

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=88.93  E-value=1.7  Score=21.10  Aligned_cols=25  Identities=16%  Similarity=0.303  Sum_probs=19.7

Q ss_pred             CCCCeEEEEe-CCCeEEEEEcCCCce
Q 036317           22 NDGRLMLLTT-LEGHIHVLHSFQGTL   46 (106)
Q Consensus        22 pdg~~l~~~~-~~~~i~l~d~~~~~~   46 (106)
                      |||+++.++. .++++.++|..+++.
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~   26 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKV   26 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeE
Confidence            6788777665 578999999977766

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=88.78  E-value=8.4  Score=28.95  Aligned_cols=48  Identities=17%  Similarity=0.103  Sum_probs=29.1

Q ss_pred             EECCCCCeEEEEeCCCeEEEEEcCCCceeccCCCcEEEEEecCCccee
Q 036317           19 KLSNDGRLMLLTTLEGHIHVLHSFQGTLPVSHNSTLEASFSQHLSLVA   66 (106)
Q Consensus        19 ~~spdg~~l~~~~~~~~i~l~d~~~~~~~~~~~~~~~~~fs~d~~~~~   66 (106)
                      .++.+....+....++.+++.+....+.....+++..++.||+++.+|
T Consensus       185 ~l~~~~~~~i~~~~g~~i~~i~~~~~~~i~~~~~i~~iavSpng~~iA  232 (410)
T PF04841_consen  185 LLSSDRVVEILLANGETIYIIDENSFKQIDSDGPIIKIAVSPNGKFIA  232 (410)
T ss_pred             EeecCcceEEEEecCCEEEEEEccccccccCCCCeEEEEECCCCCEEE
Confidence            455566656666666777755543322222345678899999994444

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=87.39  E-value=6.7  Score=28.01  Aligned_cols=78  Identities=13%  Similarity=0.156  Sum_probs=49.8

Q ss_pred             CeeEEEECCCCCeEE-EEeCCCeEEEEE--cCCCceec-----------cCCC--cEEEEEecCCcceeeeeeecccEEE
Q 036317           14 DANEVKLSNDGRLML-LTTLEGHIHVLH--SFQGTLPV-----------SHNS--TLEASFSQHLSLVALSVLILRSWVL   77 (106)
Q Consensus        14 ~v~~v~~spdg~~l~-~~~~~~~i~l~d--~~~~~~~~-----------~~~~--~~~~~fs~d~~~~~~~~~~~~~~i~   77 (106)
                      --+.++|+.|.+.+. +-+.+.+|.-||  ..+|.+.+           ...+  +-..++..+|           ...+
T Consensus       159 IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG-----------~L~V  227 (310)
T KOG4499|consen  159 ISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEG-----------NLYV  227 (310)
T ss_pred             CCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCC-----------cEEE
Confidence            346789988877664 556777887777  66776611           1111  1123445555           5555


Q ss_pred             EecCCCcEEEEECCCCC----------CCcEEEeC
Q 036317           78 EGSGDGSVYAWSARSGK----------EPPVIKWA  102 (106)
Q Consensus        78 t~s~d~~i~~wd~~~~~----------~v~~i~~s  102 (106)
                      +.-..++|+..|..+|+          .+.|.+|.
T Consensus       228 a~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFg  262 (310)
T KOG4499|consen  228 ATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFG  262 (310)
T ss_pred             EEecCcEEEEECCCCCcEEEEEEcCCCceEEEEec
Confidence            55566799999999998          66666663

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=87.09  E-value=0.86  Score=31.35  Aligned_cols=21  Identities=33%  Similarity=0.805  Sum_probs=19.9

Q ss_pred             cEEEEecCCCcEEEEECCCCC
Q 036317           74 SWVLEGSGDGSVYAWSARSGK   94 (106)
Q Consensus        74 ~~i~t~s~d~~i~~wd~~~~~   94 (106)
                      .++++-..+|.+++||+++++
T Consensus        23 ~~Ll~iT~~G~l~vWnl~~~k   43 (219)
T PF07569_consen   23 SYLLAITSSGLLYVWNLKKGK   43 (219)
T ss_pred             CEEEEEeCCCeEEEEECCCCe
Confidence            899999999999999999987

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=86.94  E-value=3.3  Score=30.26  Aligned_cols=44  Identities=25%  Similarity=0.266  Sum_probs=30.8

Q ss_pred             EECCCCCeEEEEeCC-----CeEEEEEcCCCce-----eccCCCcEEEEEecCC
Q 036317           19 KLSNDGRLMLLTTLE-----GHIHVLHSFQGTL-----PVSHNSTLEASFSQHL   62 (106)
Q Consensus        19 ~~spdg~~l~~~~~~-----~~i~l~d~~~~~~-----~~~~~~~~~~~fs~d~   62 (106)
                      .|||||++|.++-+|     |.|-+||...+-.     +.+--.+-.+.+.+||
T Consensus       120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DG  173 (366)
T COG3490         120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADG  173 (366)
T ss_pred             ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCC
Confidence            599999999887544     7888999875433     2222123358999999

>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)

Probab=86.28  E-value=5.9  Score=28.55  Aligned_cols=66  Identities=17%  Similarity=0.289  Sum_probs=46.7

Q ss_pred             CeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce---e-ccCC---CcE--EEEEecCCcceeeeeeecccEEEEecCCCc
Q 036317           14 DANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL---P-VSHN---STL--EASFSQHLSLVALSVLILRSWVLEGSGDGS   84 (106)
Q Consensus        14 ~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~---~-~~~~---~~~--~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~   84 (106)
                      -+++|...++|.+|+++-.-..|.++|..+|++   . +..+   ...  ..++=+|-           +++-.+..++.
T Consensus       145 HiNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHda-----------r~~~~~~~~~~  213 (299)
T PF14269_consen  145 HINSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDA-----------RFLNESNDDGT  213 (299)
T ss_pred             EeeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCC-----------EEeccCCCCCE
Confidence            588999999999999998999999999999987   1 1101   001  13333555           56655566778


Q ss_pred             EEEEEC
Q 036317           85 VYAWSA   90 (106)
Q Consensus        85 i~~wd~   90 (106)
                      |.++|=
T Consensus       214 IslFDN  219 (299)
T PF14269_consen  214 ISLFDN  219 (299)
T ss_pred             EEEEcC
Confidence            888876

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=86.07  E-value=7.1  Score=30.35  Aligned_cols=26  Identities=27%  Similarity=0.362  Sum_probs=20.5

Q ss_pred             cEEEEecCCCcEEEEECCCCCCCcEE
Q 036317           74 SWVLEGSGDGSVYAWSARSGKEPPVI   99 (106)
Q Consensus        74 ~~i~t~s~d~~i~~wd~~~~~~v~~i   99 (106)
                      ..+..++.+|.++.+|.++|+.+...
T Consensus       473 ~lvf~g~~~G~l~a~D~~TGe~lw~~  498 (527)
T TIGR03075       473 DLVFYGTLEGYFKAFDAKTGEELWKF  498 (527)
T ss_pred             cEEEEECCCCeEEEEECCCCCEeEEE
Confidence            45667888999999999999944443

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=85.91  E-value=2.3  Score=32.76  Aligned_cols=34  Identities=15%  Similarity=0.215  Sum_probs=26.8

Q ss_pred             CCeeEEEECC----CCCeEEEEeCCCeEEEEEcCCCce
Q 036317           13 SDANEVKLSN----DGRLMLLTTLEGHIHVLHSFQGTL   46 (106)
Q Consensus        13 ~~v~~v~~sp----dg~~l~~~~~~~~i~l~d~~~~~~   46 (106)
                      +.+..+++++    +..++++.+.|+++++||+.+++.
T Consensus       215 ~~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~  252 (547)
T PF11715_consen  215 SVAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQC  252 (547)
T ss_dssp             --EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCE
T ss_pred             CccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeE
Confidence            3567777877    788889999999999999999887

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=85.59  E-value=2.8  Score=35.05  Aligned_cols=71  Identities=11%  Similarity=0.210  Sum_probs=41.4

Q ss_pred             ECCCCCeEEEEeCCCeEEEEEcC-CCce--------eccCCCcEEEEEecCCcceeeeeeecccEEEE-ecCCCcEEEEE
Q 036317           20 LSNDGRLMLLTTLEGHIHVLHSF-QGTL--------PVSHNSTLEASFSQHLSLVALSVLILRSWVLE-GSGDGSVYAWS   89 (106)
Q Consensus        20 ~spdg~~l~~~~~~~~i~l~d~~-~~~~--------~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t-~s~d~~i~~wd   89 (106)
                      +||||+.++.++.||.+.+|.+. +|+.        ..+.+....|....+.+-+....... .++++ ...+..+++|.
T Consensus       243 lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w-~~~Itttd~nre~k~w~  321 (1283)
T KOG1916|consen  243 LSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKW-VLRITTTDVNREEKFWA  321 (1283)
T ss_pred             eCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCcccee-EEEEecccCCcceeEee
Confidence            89999999999999999988754 3433        22333332232233332222222223 33444 45567889986


Q ss_pred             CC
Q 036317           90 AR   91 (106)
Q Consensus        90 ~~   91 (106)
                      -.
T Consensus       322 ~a  323 (1283)
T KOG1916|consen  322 EA  323 (1283)
T ss_pred             cc
Confidence            54

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=85.46  E-value=10  Score=30.09  Aligned_cols=73  Identities=16%  Similarity=0.173  Sum_probs=48.9

Q ss_pred             CeeEEEECCCCCeEEEEeCCCeEEEEE---------cCCCce---------------eccCCCcEEEEEecCCcceeeee
Q 036317           14 DANEVKLSNDGRLMLLTTLEGHIHVLH---------SFQGTL---------------PVSHNSTLEASFSQHLSLVALSV   69 (106)
Q Consensus        14 ~v~~v~~spdg~~l~~~~~~~~i~l~d---------~~~~~~---------------~~~~~~~~~~~fs~d~~~~~~~~   69 (106)
                      +|..+-.|+.|..++.++-+|-+-+.-         .++|+.               ...+-.+..++|+|+.       
T Consensus       105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S-------  177 (741)
T KOG4460|consen  105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSS-------  177 (741)
T ss_pred             EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCc-------
Confidence            678889999999999999998765542         233322               0111122357888885       


Q ss_pred             eecccEEEEecCCCcEEEEECCCCC
Q 036317           70 LILRSWVLEGSGDGSVYAWSARSGK   94 (106)
Q Consensus        70 ~~~~~~i~t~s~d~~i~~wd~~~~~   94 (106)
                       .+...++--..|..|++||+....
T Consensus       178 -~~D~hL~iL~sdnviRiy~lS~~t  201 (741)
T KOG4460|consen  178 -ILDPHLVLLTSDNVIRIYSLSEPT  201 (741)
T ss_pred             -cCCceEEEEecCcEEEEEecCCcc
Confidence             333566666778899999997654

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=85.16  E-value=2.3  Score=29.79  Aligned_cols=62  Identities=19%  Similarity=0.171  Sum_probs=40.7

Q ss_pred             CCCCeEEEEeCCCeEEEEEcCCCce---eccCC--CcEEEEEecCCcceeeeeeecccEEEEe--cCCCcEEEEECCCCC
Q 036317           22 NDGRLMLLTTLEGHIHVLHSFQGTL---PVSHN--STLEASFSQHLSLVALSVLILRSWVLEG--SGDGSVYAWSARSGK   94 (106)
Q Consensus        22 pdg~~l~~~~~~~~i~l~d~~~~~~---~~~~~--~~~~~~fs~d~~~~~~~~~~~~~~i~t~--s~d~~i~~wd~~~~~   94 (106)
                      .++.+..+++.++.|+.|+++..+.   .++++  +.....-+..+           ++|+..  |.|..++.|+++.-+
T Consensus       112 ~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd-----------~~i~~a~~S~d~~~k~W~ve~~~  180 (238)
T KOG2444|consen  112 RDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSD-----------EFLKIADTSHDRVLKKWNVEKIK  180 (238)
T ss_pred             cccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCC-----------ceEEeeccccchhhhhcchhhhh
Confidence            3455788889999999999987776   22222  33333334445           666666  777788888877544

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=84.85  E-value=14  Score=27.41  Aligned_cols=69  Identities=14%  Similarity=0.222  Sum_probs=48.9

Q ss_pred             eeEEEECCCCCeEEEEe-CCCeEEEEEcCCCce--eccCC-CcEEEEEecCCcceeeeeeecccEEEEecC---CCcEEE
Q 036317           15 ANEVKLSNDGRLMLLTT-LEGHIHVLHSFQGTL--PVSHN-STLEASFSQHLSLVALSVLILRSWVLEGSG---DGSVYA   87 (106)
Q Consensus        15 v~~v~~spdg~~l~~~~-~~~~i~l~d~~~~~~--~~~~~-~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~---d~~i~~   87 (106)
                      -..++++++++.+.... .++.+.+.|..+.+.  ....+ .+..+.++|++           +++..+..   ++++.+
T Consensus        76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~-----------~~vYV~n~~~~~~~vsv  144 (381)
T COG3391          76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDG-----------KYVYVANAGNGNNTVSV  144 (381)
T ss_pred             ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCC-----------CEEEEEecccCCceEEE
Confidence            35788999998665554 558999999766665  11111 45568999999           87776655   578888


Q ss_pred             EECCCCC
Q 036317           88 WSARSGK   94 (106)
Q Consensus        88 wd~~~~~   94 (106)
                      .|-.+++
T Consensus       145 id~~t~~  151 (381)
T COG3391         145 IDAATNK  151 (381)
T ss_pred             EeCCCCe
Confidence            8887766

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=84.32  E-value=12  Score=30.90  Aligned_cols=64  Identities=16%  Similarity=0.150  Sum_probs=39.4

Q ss_pred             EEEEeCCCeEEEEEcCCC-c-e-e-c-----cCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEEECCCCC---
Q 036317           27 MLLTTLEGHIHVLHSFQG-T-L-P-V-----SHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSARSGK---   94 (106)
Q Consensus        27 l~~~~~~~~i~l~d~~~~-~-~-~-~-----~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd~~~~~---   94 (106)
                      -++|-.++.+..||.+-. . + . .     ......+++-+.+|            +||.||.+|.|+++|- .|+   
T Consensus       545 tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G------------~iavgs~~G~IRLyd~-~g~~AK  611 (794)
T PF08553_consen  545 TFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDG------------YIAVGSNKGDIRLYDR-LGKRAK  611 (794)
T ss_pred             eEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecCCc------------eEEEEeCCCcEEeecc-cchhhh
Confidence            456667788888997642 2 2 0 1     11122234444555            7899999999999994 444   


Q ss_pred             --------CCcEEEeCC
Q 036317           95 --------EPPVIKWAP  103 (106)
Q Consensus        95 --------~v~~i~~sp  103 (106)
                              +|..|+.+.
T Consensus       612 T~lp~lG~pI~~iDvt~  628 (794)
T PF08553_consen  612 TALPGLGDPIIGIDVTA  628 (794)
T ss_pred             hcCCCCCCCeeEEEecC
Confidence                    666665543

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=84.10  E-value=11  Score=27.29  Aligned_cols=46  Identities=24%  Similarity=0.437  Sum_probs=30.6

Q ss_pred             CeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce-----------eccCCCcEEEEEecC
Q 036317           14 DANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL-----------PVSHNSTLEASFSQH   61 (106)
Q Consensus        14 ~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~-----------~~~~~~~~~~~fs~d   61 (106)
                      .-..|+|.|||+ ++++...+.|++++ .++..           .........++++|+
T Consensus         3 ~P~~~a~~pdG~-l~v~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~   59 (331)
T PF07995_consen    3 NPRSMAFLPDGR-LLVAERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPD   59 (331)
T ss_dssp             SEEEEEEETTSC-EEEEETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TT
T ss_pred             CceEEEEeCCCc-EEEEeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccc
Confidence            357899999998 55567799999999 33332           012234567889985

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=83.51  E-value=16  Score=27.61  Aligned_cols=65  Identities=20%  Similarity=0.250  Sum_probs=31.9

Q ss_pred             eeEEEECCCCCeEEEEeCCC----------------eEEEEEcCCCce----e--------cc--CCCcEEEEEecCCcc
Q 036317           15 ANEVKLSNDGRLMLLTTLEG----------------HIHVLHSFQGTL----P--------VS--HNSTLEASFSQHLSL   64 (106)
Q Consensus        15 v~~v~~spdg~~l~~~~~~~----------------~i~l~d~~~~~~----~--------~~--~~~~~~~~fs~d~~~   64 (106)
                      ...+--++||+.++-=+.|.                .+.+++.+.++.    .        ..  ...-..++|||||  
T Consensus       285 ~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDg--  362 (386)
T PF14583_consen  285 CSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDG--  362 (386)
T ss_dssp             EEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTS--
T ss_pred             eeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCC--
Confidence            44556678999665433331                556778777664    0        01  1122458999999  


Q ss_pred             eeeeeeecccEEEE-ecCCCcEEEEEC
Q 036317           65 VALSVLILRSWVLE-GSGDGSVYAWSA   90 (106)
Q Consensus        65 ~~~~~~~~~~~i~t-~s~d~~i~~wd~   90 (106)
                               ++|+- +..+|...|+-+
T Consensus       363 ---------k~VlF~Sd~~G~~~vY~v  380 (386)
T PF14583_consen  363 ---------KWVLFRSDMEGPPAVYLV  380 (386)
T ss_dssp             ---------SEEEEEE-TTSS-EEEEE
T ss_pred             ---------CEEEEECCCCCCccEEEE
Confidence                     76554 445666665543

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=82.91  E-value=2.4  Score=31.37  Aligned_cols=67  Identities=13%  Similarity=0.131  Sum_probs=41.7

Q ss_pred             CeEEEEEcCCCce--eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEEECCCCCCCcEEEe
Q 036317           34 GHIHVLHSFQGTL--PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSARSGKEPPVIKW  101 (106)
Q Consensus        34 ~~i~l~d~~~~~~--~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd~~~~~~v~~i~~  101 (106)
                      +.++++|..+++.  ....+..-.+..|||+|.+..+-..+ ..+.=|-...-|.+||.++-++...|..
T Consensus        17 ~rv~viD~d~~k~lGmi~~g~~~~~~~spdgk~~y~a~T~~-sR~~rG~RtDvv~~~D~~TL~~~~EI~i   85 (342)
T PF06433_consen   17 SRVYVIDADSGKLLGMIDTGFLGNVALSPDGKTIYVAETFY-SRGTRGERTDVVEIWDTQTLSPTGEIEI   85 (342)
T ss_dssp             EEEEEEETTTTEEEEEEEEESSEEEEE-TTSSEEEEEEEEE-EETTEEEEEEEEEEEETTTTEEEEEEEE
T ss_pred             ceEEEEECCCCcEEEEeecccCCceeECCCCCEEEEEEEEE-eccccccceeEEEEEecCcCcccceEec
Confidence            5799999999888  22333444577899996666544444 2222344456899999998764444433

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=82.81  E-value=14  Score=26.83  Aligned_cols=64  Identities=17%  Similarity=0.262  Sum_probs=45.1

Q ss_pred             EECCC-CCeEEEEeCCCeEEEEEcCCCce--ec-cCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEEECCCCC
Q 036317           19 KLSND-GRLMLLTTLEGHIHVLHSFQGTL--PV-SHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSARSGK   94 (106)
Q Consensus        19 ~~spd-g~~l~~~~~~~~i~l~d~~~~~~--~~-~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd~~~~~   94 (106)
                      ..-+| ..+++.+++.+.+.-.|.++|++  .. -..++..-.. --|           .+|+-|.+.|.+++-+.++|+
T Consensus        17 VV~~dskT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~-vvg-----------dfVV~GCy~g~lYfl~~~tGs   84 (354)
T KOG4649|consen   17 VVCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAI-VVG-----------DFVVLGCYSGGLYFLCVKTGS   84 (354)
T ss_pred             EEecCCceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeE-EEC-----------CEEEEEEccCcEEEEEecchh
Confidence            33344 45667889999999999999988  21 1122221111 156           789999999999999999995

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=82.55  E-value=15  Score=27.59  Aligned_cols=35  Identities=14%  Similarity=0.158  Sum_probs=27.2

Q ss_pred             CCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce
Q 036317           11 DVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL   46 (106)
Q Consensus        11 ~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~   46 (106)
                      ..++|++++.|.=| +++++..+|.+.|.|.+...+
T Consensus        85 ~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPav  119 (395)
T PF08596_consen   85 KQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAV  119 (395)
T ss_dssp             -S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEE
T ss_pred             cCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeE
Confidence            37899999998555 688999999999999976665

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides

Probab=82.49  E-value=3.9  Score=24.10  Aligned_cols=30  Identities=30%  Similarity=0.434  Sum_probs=23.8

Q ss_pred             CCeeEEEECCCCCeEEEE-eCCCeEEEEEcC
Q 036317           13 SDANEVKLSNDGRLMLLT-TLEGHIHVLHSF   42 (106)
Q Consensus        13 ~~v~~v~~spdg~~l~~~-~~~~~i~l~d~~   42 (106)
                      ...+.+.++|+++++.++ ..++.|+++...
T Consensus        54 ~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~   84 (86)
T PF01731_consen   54 SFANGIAISPDKKYLYVASSLAHSIHVYKRH   84 (86)
T ss_pred             CCCceEEEcCCCCEEEEEeccCCeEEEEEec
Confidence            367799999999988655 467899998764

The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=82.05  E-value=2.4  Score=35.27  Aligned_cols=79  Identities=8%  Similarity=0.094  Sum_probs=58.8

Q ss_pred             CeeEEEECCCCCeEEEEeC----CCeEEEEEcCCCceeccCC---CcEEEEEecCCcceeeeeeecccEEEEecCCCcEE
Q 036317           14 DANEVKLSNDGRLMLLTTL----EGHIHVLHSFQGTLPVSHN---STLEASFSQHLSLVALSVLILRSWVLEGSGDGSVY   86 (106)
Q Consensus        14 ~v~~v~~spdg~~l~~~~~----~~~i~l~d~~~~~~~~~~~---~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~   86 (106)
                      .-+-..|+|..-++++++.    .|.+-|+ +.+|+...+-.   ...+++|+|..           -.++.|=+-|.+.
T Consensus        17 vsti~SWHPsePlfAVA~fS~er~GSVtIf-adtGEPqr~Vt~P~hatSLCWHpe~-----------~vLa~gwe~g~~~   84 (1416)
T KOG3617|consen   17 VSTISSWHPSEPLFAVASFSPERGGSVTIF-ADTGEPQRDVTYPVHATSLCWHPEE-----------FVLAQGWEMGVSD   84 (1416)
T ss_pred             cccccccCCCCceeEEEEecCCCCceEEEE-ecCCCCCcccccceehhhhccChHH-----------HHHhhccccceeE
Confidence            4445678999888887763    4677775 35677632222   23458999998           8888888899999


Q ss_pred             EEECCCCC----------CCcEEEeCCC
Q 036317           87 AWSARSGK----------EPPVIKWAPG  104 (106)
Q Consensus        87 ~wd~~~~~----------~v~~i~~sp~  104 (106)
                      +|...+.+          +|..++|||+
T Consensus        85 v~~~~~~e~htv~~th~a~i~~l~wS~~  112 (1416)
T KOG3617|consen   85 VQKTNTTETHTVVETHPAPIQGLDWSHD  112 (1416)
T ss_pred             EEecCCceeeeeccCCCCCceeEEecCC
Confidence            99988765          8999999986

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=81.41  E-value=30  Score=28.85  Aligned_cols=53  Identities=9%  Similarity=-0.036  Sum_probs=40.0

Q ss_pred             CCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCc--e------eccCCCcEEEEEecCCcc
Q 036317           12 VSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGT--L------PVSHNSTLEASFSQHLSL   64 (106)
Q Consensus        12 ~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~--~------~~~~~~~~~~~fs~d~~~   64 (106)
                      ..+++.+++|.+-+.+++|=.+|.|..+...--+  .      .....+++++.|-.|++.
T Consensus       125 ~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s  185 (933)
T KOG2114|consen  125 PSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKS  185 (933)
T ss_pred             CCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCce
Confidence            4589999999999999999999999988543211  1      234567888999888843

>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins

Probab=80.03  E-value=4.4  Score=18.38  Aligned_cols=24  Identities=17%  Similarity=0.371  Sum_probs=16.6

Q ss_pred             eeEEEECCCCCeEEEEeCCCeEEE
Q 036317           15 ANEVKLSNDGRLMLLTTLEGHIHV   38 (106)
Q Consensus        15 v~~v~~spdg~~l~~~~~~~~i~l   38 (106)
                      ...++++++|+.+++=..++.|.+
T Consensus         4 P~gvav~~~g~i~VaD~~n~rV~v   27 (28)
T PF01436_consen    4 PHGVAVDSDGNIYVADSGNHRVQV   27 (28)
T ss_dssp             EEEEEEETTSEEEEEECCCTEEEE
T ss_pred             CcEEEEeCCCCEEEEECCCCEEEE
Confidence            456788888887766666666654

For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	106
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.74
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.72
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	99.72
3ow8_A	321	WD repeat-containing protein 61; structural genomi	99.69
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.69
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.69
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	99.68
3ow8_A	321	WD repeat-containing protein 61; structural genomi	99.68
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	99.67
2pm7_B	297	Protein transport protein SEC13, protein transport	99.67
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.66
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	99.66
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.65
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.65
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.65
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.64
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.64
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.63
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.63
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.63
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.63
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.62
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.62
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	99.62
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.61
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.61
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	99.61
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.6
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.6
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.6
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.6
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.6
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.59
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.59
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.59
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.58
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.58
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.58
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.58
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.57
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.57
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.57
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.57
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.56
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.56
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.56
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.56
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.55
2pm7_B	297	Protein transport protein SEC13, protein transport	99.55
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.54
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.54
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.54
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.53
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.53
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.53
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.52
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.52
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.52
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.52
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.51
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.51
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.51
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.5
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.5
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.5
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.5
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.5
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.49
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.49
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.49
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.48
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.48
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.48
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.47
3jro_A	753	Fusion protein of protein transport protein SEC13	99.47
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.47
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.46
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.46
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.46
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.45
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.44
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.44
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.44
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.44
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.43
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.43
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.43
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.43
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.43
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.42
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.42
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.42
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.41
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.41
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.41
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.41
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.4
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.39
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.39
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.39
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.38
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.37
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.37
3jro_A	753	Fusion protein of protein transport protein SEC13	99.37
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.37
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.37
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.36
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.36
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.36
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.36
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.35
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.35
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.34
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.34
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.34
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.33
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.33
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.32
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.29
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.24
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.23
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.23
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.23
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.21
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.19
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.16
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.15
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.11
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.11
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.11
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.1
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.1
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.02
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	98.99
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	98.99
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	98.98
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	98.98
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	98.97
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	98.96
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	98.95
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	98.95
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	98.92
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	98.9
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	98.88
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	98.87
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	98.85
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	98.84
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	98.83
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	98.81
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	98.79
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	98.79
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	98.79
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	98.78
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	98.78
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	98.78
1k32_A	1045	Tricorn protease; protein degradation, substrate g	98.77
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	98.77
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	98.77
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	98.75
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	98.74
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	98.73
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	98.72
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	98.71
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	98.67
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	98.64
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	98.61
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	98.59
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	98.59
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	98.58
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	98.52
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	98.5
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	98.42
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	98.39
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	98.39
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	98.37
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	98.36
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	98.34
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	98.27
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	98.27
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	98.22
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	98.21
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	98.13
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	98.13
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	98.08
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	97.97
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	97.96
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	97.93
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	97.92
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	97.91
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	97.91
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	97.91
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	97.89
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	97.87
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	97.86
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	97.85
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	97.85
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	97.84
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	97.83
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	97.82
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	97.76
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	97.73
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	97.7
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	97.69
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	97.69
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	97.69
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	97.67
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	97.57
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	97.56
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	97.52
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	97.52
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	97.48
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	97.43
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	97.41
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	97.38
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	97.34
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	97.28
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	97.23
2qe8_A	343	Uncharacterized protein; structural genomics, join	97.21
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	97.19
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	97.17
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	97.16
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	97.11
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	97.03
2qe8_A	343	Uncharacterized protein; structural genomics, join	96.99
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	96.98
2ece_A	462	462AA long hypothetical selenium-binding protein;	96.79
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	96.78
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	96.75
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	96.74
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	96.69
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	96.52
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	96.19
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	96.19
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	96.13
2p4o_A	306	Hypothetical protein; putative lactonase, structur	96.12
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	95.9
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	95.84
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	95.78
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	95.63
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	95.59
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	95.56
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	95.49
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	95.44
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	95.41
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	95.39
2ece_A	462	462AA long hypothetical selenium-binding protein;	95.36
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	95.17
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	95.14
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	95.0
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	94.98
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	94.91
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	94.56
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	94.4
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	94.37
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	94.33
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	94.32
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	94.23
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	94.16
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	93.98
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	93.5
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	93.26
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	92.82
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	92.51
2p4o_A	306	Hypothetical protein; putative lactonase, structur	92.3
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	91.78
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	91.77
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	91.7
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	91.59
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	91.53
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	90.98
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	90.8
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	90.06
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	89.98
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	89.91
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	89.57
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	88.11
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	88.04
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	87.8
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	87.26
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	86.6
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	86.56
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	86.32
4a9v_A	592	PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona	85.37
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	85.19
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	84.39
3kya_A	496	Putative phosphatase; structural genomics, joint c	84.24
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	83.62
4a2l_A	795	BT_4663, two-component system sensor histidine kin	83.5
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	82.32
4a2l_A	795	BT_4663, two-component system sensor histidine kin	82.19
3kya_A	496	Putative phosphatase; structural genomics, joint c	82.09
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	81.91
3v65_B	386	Low-density lipoprotein receptor-related protein;	81.6
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	80.11

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.74  E-value=2.5e-17  Score=121.33  Aligned_cols=89  Identities=18%  Similarity=0.256  Sum_probs=78.9

Q ss_pred             ceeeecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEE
Q 036317            3 FDIFSDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLE   78 (106)
Q Consensus         3 ~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t   78 (106)
                      .+..++.+|.+.|++++|||||+++++++.|++|+|||. +++.    ..|.+.+.+++|+||+           ++|++
T Consensus         7 ~e~~~L~GH~~~V~~~a~spdg~~las~~~d~~v~iWd~-~~~~~~~l~gh~~~V~~l~fspdg-----------~~las   74 (577)
T 2ymu_A            7 KERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDG-----------QTIAS   74 (577)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTS-----------SEEEE
T ss_pred             EEeeEECCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEC-CCCEEEEEeCCCCCEEEEEECCCC-----------CEEEE
Confidence            356778999999999999999999999999999999995 5555    5577788899999999           99999


Q ss_pred             ecCCCcEEEEECCCCC----------CCcEEEeCCC
Q 036317           79 GSGDGSVYAWSARSGK----------EPPVIKWAPG  104 (106)
Q Consensus        79 ~s~d~~i~~wd~~~~~----------~v~~i~~sp~  104 (106)
                      ++.|++|++||+. ++          .|.+++|+|+
T Consensus        75 ~~~d~~i~vWd~~-~~~~~~~~~~~~~v~~~~~s~d  109 (577)
T 2ymu_A           75 ASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPD  109 (577)
T ss_dssp             EETTSCEEEEETT-SCEEEEECCCSSCEEEEEECTT
T ss_pred             EeCCCEEEEEECC-CCEEEEEECCCCCEEEEEECCC
Confidence            9999999999974 44          8899999986

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.72  E-value=6.1e-17  Score=115.40  Aligned_cols=78  Identities=10%  Similarity=0.089  Sum_probs=69.0

Q ss_pred             eecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce-----eccCCCcEEEEEecCCcceeeeeeecccEEEEec
Q 036317            6 FSDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL-----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGS   80 (106)
Q Consensus         6 ~~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~-----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s   80 (106)
                      ..+.++...|++++|||||+++++++.|++|+|||+.+++.     ..|...+.+++|||||           ++|++||
T Consensus       263 ~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg-----------~~laS~S  331 (365)
T 4h5i_A          263 KQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDS-----------TYVASVS  331 (365)
T ss_dssp             EEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTS-----------CEEEEEE
T ss_pred             eeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCC-----------CEEEEEe
Confidence            34556677999999999999999999999999999999886     3467788999999999           9999999


Q ss_pred             CCCcEEEEECCCCC
Q 036317           81 GDGSVYAWSARSGK   94 (106)
Q Consensus        81 ~d~~i~~wd~~~~~   94 (106)
                      .|++|+|||+....
T Consensus       332 ~D~tvrvw~ip~~~  345 (365)
T 4h5i_A          332 AANTIHIIKLPLNY  345 (365)
T ss_dssp             TTSEEEEEECCTTT
T ss_pred             CCCeEEEEEcCCCC
Confidence            99999999997543

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=99.72  E-value=7e-17  Score=111.94  Aligned_cols=87  Identities=14%  Similarity=0.211  Sum_probs=77.9

Q ss_pred             cCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCC
Q 036317            8 DGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDG   83 (106)
Q Consensus         8 ~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~   83 (106)
                      +.+|.+.|.+++|+|||+++++++.|+++++||..+++.    ..+...+..+.|+|++           ++|++|+.|+
T Consensus         9 ~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~-----------~~l~s~s~d~   77 (304)
T 2ynn_A            9 FSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARK-----------NWIIVGSDDF   77 (304)
T ss_dssp             EEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGG-----------TEEEEEETTS
T ss_pred             ecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCC-----------CEEEEECCCC
Confidence            456778999999999999999999999999999998876    4456677889999999           9999999999


Q ss_pred             cEEEEECCCCC----------CCcEEEeCCCC
Q 036317           84 SVYAWSARSGK----------EPPVIKWAPGS  105 (106)
Q Consensus        84 ~i~~wd~~~~~----------~v~~i~~sp~~  105 (106)
                      +|++||+++++          .|.+++|+|+.
T Consensus        78 ~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~  109 (304)
T 2ynn_A           78 RIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTK  109 (304)
T ss_dssp             EEEEEETTTCCEEEEEECCSSCEEEEEECSSS
T ss_pred             EEEEEECCCCcEEEEEeCCCCcEEEEEEcCCC
Confidence            99999999987          78999999863

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=99.69  E-value=4e-16  Score=109.36  Aligned_cols=87  Identities=17%  Similarity=0.260  Sum_probs=78.0

Q ss_pred             ecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCC
Q 036317            7 SDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGD   82 (106)
Q Consensus         7 ~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d   82 (106)
                      .+.++...|++++|+|+|+++++++.|+.|++||..+++.    ..+...+..++|+|++           ++|++++.|
T Consensus       201 ~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~-----------~~l~s~s~D  269 (321)
T 3ow8_A          201 TLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDD-----------THFVSSSSD  269 (321)
T ss_dssp             EECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTS-----------SEEEEEETT
T ss_pred             EEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCC-----------CEEEEEeCC
Confidence            4456777999999999999999999999999999988876    4466778899999999           999999999


Q ss_pred             CcEEEEECCCCC----------CCcEEEeCCC
Q 036317           83 GSVYAWSARSGK----------EPPVIKWAPG  104 (106)
Q Consensus        83 ~~i~~wd~~~~~----------~v~~i~~sp~  104 (106)
                      ++|++||+++++          .|.+++|+|+
T Consensus       270 ~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~  301 (321)
T 3ow8_A          270 KSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGN  301 (321)
T ss_dssp             SCEEEEETTTTEEEEEECCCSSCEEEEEECTT
T ss_pred             CcEEEEeCCCCEEEEEEcCCCCcEEEEEECCC
Confidence            999999999876          7889999986

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.69  E-value=8.1e-16  Score=106.53  Aligned_cols=90  Identities=17%  Similarity=0.296  Sum_probs=81.5

Q ss_pred             eeeecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEe
Q 036317            4 DIFSDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEG   79 (106)
Q Consensus         4 ~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~   79 (106)
                      ....+.+|.+.|++++|+|+|+++++++.|+.+++||..+++.    ..+...+..+.|+|++           ++++++
T Consensus        24 ~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~-----------~~l~s~   92 (369)
T 3zwl_B           24 KAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFT-----------KYCVTG   92 (369)
T ss_dssp             EEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTS-----------SEEEEE
T ss_pred             ccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCC-----------CEEEEE
Confidence            5567788999999999999999999999999999999998876    4466778899999999           999999


Q ss_pred             cCCCcEEEEECCCCC---------CCcEEEeCCC
Q 036317           80 SGDGSVYAWSARSGK---------EPPVIKWAPG  104 (106)
Q Consensus        80 s~d~~i~~wd~~~~~---------~v~~i~~sp~  104 (106)
                      +.|+.|++||+++++         .+.+++|+|+
T Consensus        93 ~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~  126 (369)
T 3zwl_B           93 SADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPC  126 (369)
T ss_dssp             ETTTEEEEEETTTCCEEEEEECSSCEEEEEECTT
T ss_pred             eCCCeEEEEECCCCcEEEEeecCCCeEEEEEccC
Confidence            999999999999987         7888999886

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.69  E-value=9.8e-16  Score=105.63  Aligned_cols=89  Identities=18%  Similarity=0.342  Sum_probs=79.9

Q ss_pred             eeecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEec
Q 036317            5 IFSDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGS   80 (106)
Q Consensus         5 ~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s   80 (106)
                      .+.+.+|.+.|++++|+|+|+++++++.|+.+++||..+++.    ..+...+..+.|+|++           ++|++++
T Consensus        16 ~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~-----------~~l~s~~   84 (312)
T 4ery_A           16 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS-----------NLLVSAS   84 (312)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTS-----------SEEEEEE
T ss_pred             EEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCC-----------CEEEEEC
Confidence            456678889999999999999999999999999999988876    4466678889999999           9999999


Q ss_pred             CCCcEEEEECCCCC----------CCcEEEeCCC
Q 036317           81 GDGSVYAWSARSGK----------EPPVIKWAPG  104 (106)
Q Consensus        81 ~d~~i~~wd~~~~~----------~v~~i~~sp~  104 (106)
                      .|+.|++||+++++          .|.+++|+|+
T Consensus        85 ~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~  118 (312)
T 4ery_A           85 DDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ  118 (312)
T ss_dssp             TTSEEEEEETTTCCEEEEEECCSSCEEEEEECSS
T ss_pred             CCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCC
Confidence            99999999999887          6788899886

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=99.68  E-value=3.5e-16  Score=112.68  Aligned_cols=88  Identities=16%  Similarity=0.191  Sum_probs=79.7

Q ss_pred             eecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecC
Q 036317            6 FSDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSG   81 (106)
Q Consensus         6 ~~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~   81 (106)
                      +.+.+|.++|++++|+|+++++++++.|++|++||..+++.    ..+...+..++|+|++           +++++|+.
T Consensus       102 ~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~-----------~~l~sgs~  170 (410)
T 1vyh_C          102 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSG-----------KLLASCSA  170 (410)
T ss_dssp             CEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTS-----------SEEEEEET
T ss_pred             EeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCC-----------CEEEEEeC
Confidence            45567888999999999999999999999999999999876    4567788899999999           99999999


Q ss_pred             CCcEEEEECCCCC----------CCcEEEeCCC
Q 036317           82 DGSVYAWSARSGK----------EPPVIKWAPG  104 (106)
Q Consensus        82 d~~i~~wd~~~~~----------~v~~i~~sp~  104 (106)
                      |++|++||+++++          .|.+++|+|+
T Consensus       171 D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~  203 (410)
T 1vyh_C          171 DMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPN  203 (410)
T ss_dssp             TSCCCEEETTSSCEEECCCCCSSCEEEEEECSS
T ss_pred             CCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCC
Confidence            9999999999876          7899999986

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=99.68  E-value=9.1e-16  Score=107.53  Aligned_cols=86  Identities=15%  Similarity=0.206  Sum_probs=76.3

Q ss_pred             cCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCC
Q 036317            8 DGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDG   83 (106)
Q Consensus         8 ~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~   83 (106)
                      +..+...|.+++|+|||+++++++.|+.|++||..+++.    ..+...+..++|+|++           ++|++|+.|+
T Consensus       160 ~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~-----------~~l~s~s~dg  228 (321)
T 3ow8_A          160 LDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDS-----------QLLVTASDDG  228 (321)
T ss_dssp             EECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTS-----------CEEEEECTTS
T ss_pred             ecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCC-----------CEEEEEcCCC
Confidence            334456899999999999999999999999999999876    3466678899999999           9999999999


Q ss_pred             cEEEEECCCCC----------CCcEEEeCCC
Q 036317           84 SVYAWSARSGK----------EPPVIKWAPG  104 (106)
Q Consensus        84 ~i~~wd~~~~~----------~v~~i~~sp~  104 (106)
                      +|++||+++++          .|.+++|+|+
T Consensus       229 ~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~  259 (321)
T 3ow8_A          229 YIKIYDVQHANLAGTLSGHASWVLNVAFCPD  259 (321)
T ss_dssp             CEEEEETTTCCEEEEECCCSSCEEEEEECTT
T ss_pred             eEEEEECCCcceeEEEcCCCCceEEEEECCC
Confidence            99999999876          6889999986

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=99.67  E-value=9.9e-16  Score=108.77  Aligned_cols=87  Identities=20%  Similarity=0.223  Sum_probs=75.9

Q ss_pred             cCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCC
Q 036317            8 DGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDG   83 (106)
Q Consensus         8 ~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~   83 (106)
                      ..+|.+.|++++|+|||+++++++.|++|++||+.+++.    ..|.+.+..+.|+|++          +..+++++.|+
T Consensus       123 ~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~----------~~~l~s~s~D~  192 (344)
T 4gqb_B          123 KYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHK----------DSVFLSCSEDN  192 (344)
T ss_dssp             EECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSC----------TTEEEEEETTS
T ss_pred             ccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCC----------CCceeeecccc
Confidence            346778999999999999999999999999999999887    4567788899999998          23678999999


Q ss_pred             cEEEEECCCCC------------CCcEEEeCCC
Q 036317           84 SVYAWSARSGK------------EPPVIKWAPG  104 (106)
Q Consensus        84 ~i~~wd~~~~~------------~v~~i~~sp~  104 (106)
                      +|++||+++++            .+.+++|+|.
T Consensus       193 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~  225 (344)
T 4gqb_B          193 RILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQ  225 (344)
T ss_dssp             CEEEEETTSSSCEEECC----CCCEEEEEECSS
T ss_pred             ccccccccccceeeeeecceeeccceeeeecCC
Confidence            99999999887            4678899884

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.67  E-value=1.1e-15  Score=105.64  Aligned_cols=86  Identities=15%  Similarity=0.277  Sum_probs=74.5

Q ss_pred             cCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCC--ce----eccCCCcEEEEEecC--CcceeeeeeecccEEEEe
Q 036317            8 DGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQG--TL----PVSHNSTLEASFSQH--LSLVALSVLILRSWVLEG   79 (106)
Q Consensus         8 ~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~--~~----~~~~~~~~~~~fs~d--~~~~~~~~~~~~~~i~t~   79 (106)
                      +.+|.+.|.+++|+|+|+++++++.|++|+|||..++  +.    ..|.+.+..+.|+|+  +           ++|++|
T Consensus         5 ~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g-----------~~l~s~   73 (297)
T 2pm7_B            5 ANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG-----------TILASC   73 (297)
T ss_dssp             CCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGC-----------SEEEEE
T ss_pred             ccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcC-----------CEEEEE
Confidence            4678889999999999999999999999999998653  22    557778889999864  8           899999


Q ss_pred             cCCCcEEEEECCCCC------------CCcEEEeCCC
Q 036317           80 SGDGSVYAWSARSGK------------EPPVIKWAPG  104 (106)
Q Consensus        80 s~d~~i~~wd~~~~~------------~v~~i~~sp~  104 (106)
                      +.|++|++||+++++            .|.+++|+|.
T Consensus        74 s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~  110 (297)
T 2pm7_B           74 SYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPH  110 (297)
T ss_dssp             ETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCG
T ss_pred             cCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcC
Confidence            999999999998763            6889999985

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.66  E-value=1e-15  Score=107.84  Aligned_cols=87  Identities=13%  Similarity=0.184  Sum_probs=76.2

Q ss_pred             ecCCCCC-CeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce-------eccCCCcEEEEEecCCcceeeeeeecccEEEE
Q 036317            7 SDGGDVS-DANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL-------PVSHNSTLEASFSQHLSLVALSVLILRSWVLE   78 (106)
Q Consensus         7 ~~~~~~~-~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~-------~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t   78 (106)
                      .+.+|.. +|..++|+|||+++++++.|++|+|||..+++.       ..+...+..++|+|++           ++|++
T Consensus        10 ~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g-----------~~l~s   78 (345)
T 3fm0_A           10 RVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCG-----------NYLAS   78 (345)
T ss_dssp             EECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTS-----------SEEEE
T ss_pred             eecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCC-----------CEEEE
Confidence            4567776 999999999999999999999999999988753       3466678899999999           99999


Q ss_pred             ecCCCcEEEEECCCCC------------CCcEEEeCCC
Q 036317           79 GSGDGSVYAWSARSGK------------EPPVIKWAPG  104 (106)
Q Consensus        79 ~s~d~~i~~wd~~~~~------------~v~~i~~sp~  104 (106)
                      |+.|+++++||+.++.            .|.+++|+|+
T Consensus        79 ~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~  116 (345)
T 3fm0_A           79 ASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPS  116 (345)
T ss_dssp             EETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTT
T ss_pred             EECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCC
Confidence            9999999999988763            7899999986

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=99.66  E-value=1.1e-15  Score=105.88  Aligned_cols=86  Identities=14%  Similarity=0.126  Sum_probs=76.8

Q ss_pred             cCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCC
Q 036317            8 DGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDG   83 (106)
Q Consensus         8 ~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~   83 (106)
                      +..+...|.+++|+|+++++++++.|++|++||..+++.    ..+...+..++|+|++           +++++|+.|+
T Consensus        51 ~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~-----------~~l~sgs~D~  119 (304)
T 2ynn_A           51 IQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTK-----------PYVLSGSDDL  119 (304)
T ss_dssp             EECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSS-----------SEEEEEETTS
T ss_pred             eeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCC-----------CEEEEECCCC
Confidence            345567899999999999999999999999999999876    4577788899999999           9999999999


Q ss_pred             cEEEEECCCCC-----------CCcEEEeCCC
Q 036317           84 SVYAWSARSGK-----------EPPVIKWAPG  104 (106)
Q Consensus        84 ~i~~wd~~~~~-----------~v~~i~~sp~  104 (106)
                      +|++||++++.           .|.+++|+|.
T Consensus       120 ~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~  151 (304)
T 2ynn_A          120 TVKLWNWENNWALEQTFEGHEHFVMCVAFNPK  151 (304)
T ss_dssp             CEEEEEGGGTTEEEEEECCCCSCEEEEEECTT
T ss_pred             eEEEEECCCCcchhhhhcccCCcEEEEEECCC
Confidence            99999998773           7899999984

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.65  E-value=2.6e-15  Score=105.40  Aligned_cols=87  Identities=14%  Similarity=0.184  Sum_probs=77.1

Q ss_pred             ecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCC
Q 036317            7 SDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGD   82 (106)
Q Consensus         7 ~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d   82 (106)
                      .+.+|.+.|.+++|+|+++++++++.|+.+++||..+++.    ..+...+..++|+|++           +++++|+.|
T Consensus       179 ~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~-----------~~l~s~s~d  247 (340)
T 1got_B          179 TFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNG-----------NAFATGSDD  247 (340)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTS-----------SEEEEEETT
T ss_pred             EEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCC-----------CEEEEEcCC
Confidence            3456778999999999999999999999999999998876    4466678899999999           999999999


Q ss_pred             CcEEEEECCCCC------------CCcEEEeCCC
Q 036317           83 GSVYAWSARSGK------------EPPVIKWAPG  104 (106)
Q Consensus        83 ~~i~~wd~~~~~------------~v~~i~~sp~  104 (106)
                      ++|++||+++++            .|.+++|+|+
T Consensus       248 ~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~  281 (340)
T 1got_B          248 ATCRLFDLRADQELMTYSHDNIICGITSVSFSKS  281 (340)
T ss_dssp             SCEEEEETTTTEEEEEECCTTCCSCEEEEEECTT
T ss_pred             CcEEEEECCCCcEEEEEccCCcccceEEEEECCC
Confidence            999999998765            4788999986

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.65  E-value=8.8e-16  Score=107.02  Aligned_cols=86  Identities=13%  Similarity=0.234  Sum_probs=72.3

Q ss_pred             cCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce------eccCCCcEEEEEec--CCcceeeeeeecccEEEEe
Q 036317            8 DGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL------PVSHNSTLEASFSQ--HLSLVALSVLILRSWVLEG   79 (106)
Q Consensus         8 ~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~------~~~~~~~~~~~fs~--d~~~~~~~~~~~~~~i~t~   79 (106)
                      +.+|.+.|++++|+|+|+++++++.|++++|||+.++..      ..|.+.+..++|+|  ++           ++|++|
T Consensus         9 ~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~-----------~~l~s~   77 (316)
T 3bg1_A            9 DTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYG-----------NILASC   77 (316)
T ss_dssp             -----CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGS-----------SCEEEE
T ss_pred             cccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCC-----------CEEEEE
Confidence            357788999999999999999999999999999987642      45777888999986  48           899999


Q ss_pred             cCCCcEEEEECCCCC------------CCcEEEeCCC
Q 036317           80 SGDGSVYAWSARSGK------------EPPVIKWAPG  104 (106)
Q Consensus        80 s~d~~i~~wd~~~~~------------~v~~i~~sp~  104 (106)
                      +.|++|++||+++++            .|.+++|+|.
T Consensus        78 s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~  114 (316)
T 3bg1_A           78 SYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPH  114 (316)
T ss_dssp             ETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCT
T ss_pred             ECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCC
Confidence            999999999998863            7899999996

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.65  E-value=3.6e-15  Score=105.61  Aligned_cols=99  Identities=18%  Similarity=0.274  Sum_probs=79.8

Q ss_pred             eecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeee------------
Q 036317            6 FSDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSV------------   69 (106)
Q Consensus         6 ~~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~------------   69 (106)
                      -.+.+|.+.|.+++|+|||+++++++.|+++++||..+++.    ..+...+..+.|+|+++++|...            
T Consensus        58 ~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~  137 (354)
T 2pbi_B           58 RTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTF  137 (354)
T ss_dssp             EEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCC
T ss_pred             EEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEec
Confidence            34568889999999999999999999999999999988766    33555677888888888776321            


Q ss_pred             -------------------------eecccEEEEecCCCcEEEEECCCCC----------CCcEEEeCCC
Q 036317           70 -------------------------LILRSWVLEGSGDGSVYAWSARSGK----------EPPVIKWAPG  104 (106)
Q Consensus        70 -------------------------~~~~~~i~t~s~d~~i~~wd~~~~~----------~v~~i~~sp~  104 (106)
                                               ....+.|++++.|++|++||+++++          .|.+++|+|.
T Consensus       138 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~  207 (354)
T 2pbi_B          138 DKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPS  207 (354)
T ss_dssp             CTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCC
T ss_pred             cccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeC
Confidence                                     1223579999999999999999887          6778888774

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.64  E-value=2.5e-15  Score=105.79  Aligned_cols=85  Identities=15%  Similarity=0.280  Sum_probs=74.8

Q ss_pred             CCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce------eccCCCcEEEEEecCCcceeeeeeecccEEEEecCC
Q 036317            9 GGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL------PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGD   82 (106)
Q Consensus         9 ~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~------~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d   82 (106)
                      .+|...|.+++|+|+|+++++++.|+++++||..++..      ..+...+..++|+|++           ++|++|+.|
T Consensus        58 ~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~-----------~~l~s~s~D  126 (345)
T 3fm0_A           58 EGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSG-----------NLLATCSRD  126 (345)
T ss_dssp             SSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTS-----------SEEEEEETT
T ss_pred             cccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCC-----------CEEEEEECC
Confidence            56778999999999999999999999999999887643      4566788899999999           999999999


Q ss_pred             CcEEEEECCCCC-------------CCcEEEeCCC
Q 036317           83 GSVYAWSARSGK-------------EPPVIKWAPG  104 (106)
Q Consensus        83 ~~i~~wd~~~~~-------------~v~~i~~sp~  104 (106)
                      ++|++||+++++             .|.+++|+|+
T Consensus       127 ~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~  161 (345)
T 3fm0_A          127 KSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPS  161 (345)
T ss_dssp             SCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSS
T ss_pred             CeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCC
Confidence            999999998753             6888999986

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.64  E-value=5.4e-15  Score=103.81  Aligned_cols=87  Identities=15%  Similarity=0.122  Sum_probs=75.4

Q ss_pred             ecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce---ec---cCCCcEEEEEecCCcceeeeeeecccEEEEec
Q 036317            7 SDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL---PV---SHNSTLEASFSQHLSLVALSVLILRSWVLEGS   80 (106)
Q Consensus         7 ~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~---~~---~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s   80 (106)
                      .+.+|...|++++|+|+|+++++++.|+.+++||..+++.   ..   ....+..++|+|++           +++++|+
T Consensus       221 ~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g-----------~~l~~g~  289 (340)
T 1got_B          221 TFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSG-----------RLLLAGY  289 (340)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTS-----------SEEEEEE
T ss_pred             EEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCC-----------CEEEEEC
Confidence            3456777999999999999999999999999999988765   11   22356789999999           9999999


Q ss_pred             CCCcEEEEECCCCC----------CCcEEEeCCC
Q 036317           81 GDGSVYAWSARSGK----------EPPVIKWAPG  104 (106)
Q Consensus        81 ~d~~i~~wd~~~~~----------~v~~i~~sp~  104 (106)
                      .|+.|++||+.+++          .|.+++|+|+
T Consensus       290 ~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~d  323 (340)
T 1got_B          290 DDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDD  323 (340)
T ss_dssp             TTSEEEEEETTTCCEEEEEECCSSCEEEEEECTT
T ss_pred             CCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCC
Confidence            99999999998876          8899999986

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.63  E-value=5.2e-15  Score=103.87  Aligned_cols=87  Identities=11%  Similarity=0.200  Sum_probs=76.6

Q ss_pred             ecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCC
Q 036317            7 SDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGD   82 (106)
Q Consensus         7 ~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d   82 (106)
                      .+.+|...|.+++|+|+++++++++.|+++++||+.+++.    ..+...+..++|+|++           ++|++++.|
T Consensus        71 ~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~-----------~~l~s~~~d  139 (343)
T 2xzm_R           71 ALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDN-----------RQILSAGAE  139 (343)
T ss_dssp             EECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSST-----------TEEEEEETT
T ss_pred             hhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCC-----------CEEEEEcCC
Confidence            3467788999999999999999999999999999998876    4567788899999999           999999999


Q ss_pred             CcEEEEECCCCC------------CCcEEEeCCC
Q 036317           83 GSVYAWSARSGK------------EPPVIKWAPG  104 (106)
Q Consensus        83 ~~i~~wd~~~~~------------~v~~i~~sp~  104 (106)
                      ++|++||+....            .+.+++|+|.
T Consensus       140 ~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~  173 (343)
T 2xzm_R          140 REIKLWNILGECKFSSAEKENHSDWVSCVRYSPI  173 (343)
T ss_dssp             SCEEEEESSSCEEEECCTTTSCSSCEEEEEECCC
T ss_pred             CEEEEEeccCCceeeeecccCCCceeeeeeeccc
Confidence            999999986321            6889999985

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.63  E-value=2.5e-15  Score=104.83  Aligned_cols=88  Identities=10%  Similarity=0.103  Sum_probs=76.3

Q ss_pred             eecCCCCCCeeEEEECCCC-CeEEEEeCCCeEEEEEcCCCce---------eccCCCcEEEEEecCCcceeeeeeecccE
Q 036317            6 FSDGGDVSDANEVKLSNDG-RLMLLTTLEGHIHVLHSFQGTL---------PVSHNSTLEASFSQHLSLVALSVLILRSW   75 (106)
Q Consensus         6 ~~~~~~~~~v~~v~~spdg-~~l~~~~~~~~i~l~d~~~~~~---------~~~~~~~~~~~fs~d~~~~~~~~~~~~~~   75 (106)
                      -.+.+|.+.|.+++|+|++ +++++++.|+++++||..+...         ..|...+..+.|+|++           ++
T Consensus        11 ~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg-----------~~   79 (319)
T 3frx_A           11 GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADG-----------AY   79 (319)
T ss_dssp             EEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTS-----------SE
T ss_pred             EEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCC-----------CE
Confidence            3567899999999999965 8899999999999999864221         4567778889999999           99


Q ss_pred             EEEecCCCcEEEEECCCCC----------CCcEEEeCCC
Q 036317           76 VLEGSGDGSVYAWSARSGK----------EPPVIKWAPG  104 (106)
Q Consensus        76 i~t~s~d~~i~~wd~~~~~----------~v~~i~~sp~  104 (106)
                      +++|+.|++|++||+++++          .|.+++|+|+
T Consensus        80 l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~  118 (319)
T 3frx_A           80 ALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKK  118 (319)
T ss_dssp             EEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTT
T ss_pred             EEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCC
Confidence            9999999999999999986          7889999886

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.63  E-value=7.7e-15  Score=101.13  Aligned_cols=86  Identities=19%  Similarity=0.315  Sum_probs=77.1

Q ss_pred             cCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCC
Q 036317            8 DGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDG   83 (106)
Q Consensus         8 ~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~   83 (106)
                      +.++...|.+++|+|+|+++++++.|+.+++||..+++.    ..+...+..+.|+|++           +++++|+.|+
T Consensus        61 ~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-----------~~l~s~~~d~  129 (312)
T 4ery_A           61 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-----------NLIVSGSFDE  129 (312)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSS-----------SEEEEEETTS
T ss_pred             hccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCC-----------CEEEEEeCCC
Confidence            456677999999999999999999999999999998876    4466678889999999           9999999999


Q ss_pred             cEEEEECCCCC----------CCcEEEeCCC
Q 036317           84 SVYAWSARSGK----------EPPVIKWAPG  104 (106)
Q Consensus        84 ~i~~wd~~~~~----------~v~~i~~sp~  104 (106)
                      +|++||+++++          .+.++.|+|+
T Consensus       130 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~  160 (312)
T 4ery_A          130 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD  160 (312)
T ss_dssp             CEEEEETTTCCEEEEECCCSSCEEEEEECTT
T ss_pred             cEEEEECCCCEEEEEecCCCCcEEEEEEcCC
Confidence            99999999887          7888999886

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.63  E-value=4.9e-15  Score=105.54  Aligned_cols=87  Identities=17%  Similarity=0.249  Sum_probs=74.1

Q ss_pred             cCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----ec-------cCCCcEEEEEecCCcceeeeeeecccEE
Q 036317            8 DGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PV-------SHNSTLEASFSQHLSLVALSVLILRSWV   76 (106)
Q Consensus         8 ~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~-------~~~~~~~~~fs~d~~~~~~~~~~~~~~i   76 (106)
                      +.+|.+.|++++|+|+|+++++++.|+++++||..+++.    ..       ....+..++|+|+|           +++
T Consensus       245 ~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-----------~~l  313 (380)
T 3iz6_a          245 YHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISG-----------RLL  313 (380)
T ss_dssp             ECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSS-----------SEE
T ss_pred             ECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCC-----------CEE
Confidence            346778999999999999999999999999999998875    11       11235689999999           999


Q ss_pred             EEecCCCcEEEEECCCCC--------------CCcEEEeCCCC
Q 036317           77 LEGSGDGSVYAWSARSGK--------------EPPVIKWAPGS  105 (106)
Q Consensus        77 ~t~s~d~~i~~wd~~~~~--------------~v~~i~~sp~~  105 (106)
                      ++|+.|+.|++||+.+++              .|.+++|+|+-
T Consensus       314 ~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg  356 (380)
T 3iz6_a          314 FAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDG  356 (380)
T ss_dssp             EEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSS
T ss_pred             EEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCC
Confidence            999999999999987664              78999999963

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.62  E-value=6.4e-15  Score=102.76  Aligned_cols=87  Identities=15%  Similarity=0.274  Sum_probs=76.8

Q ss_pred             ecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCC
Q 036317            7 SDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGD   82 (106)
Q Consensus         7 ~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d   82 (106)
                      .+.+|...|.+++|+|||+++++++.|++|++||+.+++.    ..+...+..+.|+|++           +++++|+.|
T Consensus        60 ~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~-----------~~l~s~s~D  128 (319)
T 3frx_A           60 SFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKA-----------SMIISGSRD  128 (319)
T ss_dssp             EEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTS-----------CEEEEEETT
T ss_pred             EEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCC-----------CEEEEEeCC
Confidence            3457788999999999999999999999999999999876    4577788899999999           999999999


Q ss_pred             CcEEEEECCCCC---------CCcEEEeCCC
Q 036317           83 GSVYAWSARSGK---------EPPVIKWAPG  104 (106)
Q Consensus        83 ~~i~~wd~~~~~---------~v~~i~~sp~  104 (106)
                      ++|++||++...         .+.+++|+|.
T Consensus       129 ~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~  159 (319)
T 3frx_A          129 KTIKVWTIKGQCLATLLGHNDWVSQVRVVPN  159 (319)
T ss_dssp             SCEEEEETTSCEEEEECCCSSCEEEEEECCC
T ss_pred             CeEEEEECCCCeEEEEeccCCcEEEEEEccC
Confidence            999999997532         6788888874

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.62  E-value=6.9e-15  Score=103.24  Aligned_cols=87  Identities=14%  Similarity=0.249  Sum_probs=76.4

Q ss_pred             ecCCCCCCeeEEEE-----CC-CCCeEEEEeCCCeEEEEEcCCCc-------e----eccCCCcEEEEEecCCcceeeee
Q 036317            7 SDGGDVSDANEVKL-----SN-DGRLMLLTTLEGHIHVLHSFQGT-------L----PVSHNSTLEASFSQHLSLVALSV   69 (106)
Q Consensus         7 ~~~~~~~~v~~v~~-----sp-dg~~l~~~~~~~~i~l~d~~~~~-------~----~~~~~~~~~~~fs~d~~~~~~~~   69 (106)
                      .+.+|.+.|++++|     ++ |++++++++.|++|++||..+.+       .    ..+...+..++|+|++       
T Consensus        16 ~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~-------   88 (343)
T 2xzm_R           16 ILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQEN-------   88 (343)
T ss_dssp             EEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSST-------
T ss_pred             eeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCC-------
Confidence            45788899999999     77 99999999999999999987543       1    3466778889999999       


Q ss_pred             eecccEEEEecCCCcEEEEECCCCC----------CCcEEEeCCC
Q 036317           70 LILRSWVLEGSGDGSVYAWSARSGK----------EPPVIKWAPG  104 (106)
Q Consensus        70 ~~~~~~i~t~s~d~~i~~wd~~~~~----------~v~~i~~sp~  104 (106)
                          +++++|+.|++|++||+++++          .|.+++|+|+
T Consensus        89 ----~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~  129 (343)
T 2xzm_R           89 ----CFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPD  129 (343)
T ss_dssp             ----TEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSS
T ss_pred             ----CEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCC
Confidence                999999999999999999987          7889999986

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=99.62  E-value=3.5e-15  Score=105.93  Aligned_cols=80  Identities=10%  Similarity=0.138  Sum_probs=71.2

Q ss_pred             CCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce--------eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCc
Q 036317           13 SDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL--------PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGS   84 (106)
Q Consensus        13 ~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~--------~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~   84 (106)
                      ..|.+++|+||++ +++++.|++|+|||+.+++.        ..|.+.+.+++|+||+           ++|++|+.|++
T Consensus        83 ~~v~~~~~s~d~~-l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg-----------~~l~sgs~d~~  150 (344)
T 4gqb_B           83 AGVADLTWVGERG-ILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSG-----------TQAVSGSKDIC  150 (344)
T ss_dssp             SCEEEEEEETTTE-EEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTS-----------SEEEEEETTSC
T ss_pred             CCEEEEEEeCCCe-EEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCC-----------CEEEEEeCCCe
Confidence            4699999999964 88999999999999998865        2466788899999999           99999999999


Q ss_pred             EEEEECCCCC----------CCcEEEeCCC
Q 036317           85 VYAWSARSGK----------EPPVIKWAPG  104 (106)
Q Consensus        85 i~~wd~~~~~----------~v~~i~~sp~  104 (106)
                      |++||+++++          .|.+++|+|.
T Consensus       151 i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~  180 (344)
T 4gqb_B          151 IKVWDLAQQVVLSSYRAHAAQVTCVAASPH  180 (344)
T ss_dssp             EEEEETTTTEEEEEECCCSSCEEEEEECSS
T ss_pred             EEEEECCCCcEEEEEcCcCCceEEEEecCC
Confidence            9999999987          7889999886

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.61  E-value=1.6e-14  Score=108.75  Aligned_cols=98  Identities=17%  Similarity=0.180  Sum_probs=80.2

Q ss_pred             ecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce------eccCCCcEEEEEecCCcceeeee-----------
Q 036317            7 SDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL------PVSHNSTLEASFSQHLSLVALSV-----------   69 (106)
Q Consensus         7 ~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~------~~~~~~~~~~~fs~d~~~~~~~~-----------   69 (106)
                      .+.+|...|++++|||||+++++++.|++|+|||..+++.      ..+.+.+..++|+||+++||...           
T Consensus        54 ~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~  133 (611)
T 1nr0_A           54 IYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFL  133 (611)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEE
T ss_pred             EecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEE
Confidence            3457788999999999999999999999999999875542      44667888999999999887432           


Q ss_pred             ----------------------eecc-cEEEEecCCCcEEEEECCCCC----------CCcEEEeCCC
Q 036317           70 ----------------------LILR-SWVLEGSGDGSVYAWSARSGK----------EPPVIKWAPG  104 (106)
Q Consensus        70 ----------------------~~~~-~~i~t~s~d~~i~~wd~~~~~----------~v~~i~~sp~  104 (106)
                                            .+.. ..+++|+.|++|++||.++++          .|.+++|+|+
T Consensus       134 wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspd  201 (611)
T 1nr0_A          134 FDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPD  201 (611)
T ss_dssp             TTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTT
T ss_pred             eeCCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCC
Confidence                                  1111 259999999999999988764          7899999996

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.61  E-value=8.3e-15  Score=100.06  Aligned_cols=86  Identities=21%  Similarity=0.270  Sum_probs=75.4

Q ss_pred             cCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCc----e----eccCCCcEEEEEec--CCcceeeeeeecccEEE
Q 036317            8 DGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGT----L----PVSHNSTLEASFSQ--HLSLVALSVLILRSWVL   77 (106)
Q Consensus         8 ~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~----~----~~~~~~~~~~~fs~--d~~~~~~~~~~~~~~i~   77 (106)
                      +.+|.+.|++++|+|+|+++++++.|+.|++||..++.    .    ..+...+..++|+|  |+           ++|+
T Consensus         7 ~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~-----------~~l~   75 (351)
T 3f3f_A            7 DSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYG-----------RIIA   75 (351)
T ss_dssp             ECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGC-----------SEEE
T ss_pred             CcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCC-----------CEEE
Confidence            46888999999999999999999999999999998763    2    34667788999999  69           9999


Q ss_pred             EecCCCcEEEEECCCCC-------------------CCcEEEeCCC
Q 036317           78 EGSGDGSVYAWSARSGK-------------------EPPVIKWAPG  104 (106)
Q Consensus        78 t~s~d~~i~~wd~~~~~-------------------~v~~i~~sp~  104 (106)
                      +++.|++|++||+++++                   .|.+++|+|.
T Consensus        76 s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  121 (351)
T 3f3f_A           76 SASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPA  121 (351)
T ss_dssp             EEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCG
T ss_pred             EEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCC
Confidence            99999999999998762                   7888999885

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=99.61  E-value=7.1e-15  Score=105.87  Aligned_cols=87  Identities=10%  Similarity=0.167  Sum_probs=77.0

Q ss_pred             ecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCC
Q 036317            7 SDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGD   82 (106)
Q Consensus         7 ~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d   82 (106)
                      .+.+|.+.|.+++|+|+|+++++++.|++|++||..+++.    ..+...+.++.|+|++           +++++|+.|
T Consensus       145 ~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~-----------~~l~s~s~D  213 (410)
T 1vyh_C          145 TLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNG-----------DHIVSASRD  213 (410)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSS-----------SEEEEEETT
T ss_pred             EEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCC-----------CEEEEEeCC
Confidence            3456778999999999999999999999999999988776    4566778899999999           999999999


Q ss_pred             CcEEEEECCCCC----------CCcEEEeCCC
Q 036317           83 GSVYAWSARSGK----------EPPVIKWAPG  104 (106)
Q Consensus        83 ~~i~~wd~~~~~----------~v~~i~~sp~  104 (106)
                      ++|++||+++++          .+.++.|+|+
T Consensus       214 ~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~  245 (410)
T 1vyh_C          214 KTIKMWEVQTGYCVKTFTGHREWVRMVRPNQD  245 (410)
T ss_dssp             SEEEEEETTTCCEEEEEECCSSCEEEEEECTT
T ss_pred             CeEEEEECCCCcEEEEEeCCCccEEEEEECCC
Confidence            999999999987          6778888875

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.60  E-value=9.5e-15  Score=102.32  Aligned_cols=86  Identities=13%  Similarity=0.155  Sum_probs=70.8

Q ss_pred             cCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCC-Cc---e----eccCCCcEEEEEecCCcceeeeeeecccEEEEe
Q 036317            8 DGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQ-GT---L----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEG   79 (106)
Q Consensus         8 ~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~-~~---~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~   79 (106)
                      +.+|.+.|.+++|+|+|+++++++.|+++++||... ++   .    ..+...+..+.|+|++           ++|+++
T Consensus       103 ~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~-----------~~l~s~  171 (330)
T 2hes_X          103 IEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSE-----------ALLASS  171 (330)
T ss_dssp             EC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSS-----------SEEEEE
T ss_pred             EcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCC-----------CEEEEE
Confidence            467778999999999999999999999999999843 22   1    3466678899999999           999999


Q ss_pred             cCCCcEEEEECCCCC------------CCcEEEeCCC
Q 036317           80 SGDGSVYAWSARSGK------------EPPVIKWAPG  104 (106)
Q Consensus        80 s~d~~i~~wd~~~~~------------~v~~i~~sp~  104 (106)
                      +.|++|++||+.++.            .|.+++|+|+
T Consensus       172 s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~  208 (330)
T 2hes_X          172 SYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKT  208 (330)
T ss_dssp             ETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCS
T ss_pred             cCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCC
Confidence            999999999987652            7889999986

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.60  E-value=1.7e-14  Score=99.75  Aligned_cols=85  Identities=18%  Similarity=0.320  Sum_probs=75.2

Q ss_pred             CCCCCCeeEEEECCC---CCeEEEEeCCCeEEEEEcCC-Cce-----eccCCCcEEEEEecCCcceeeeeeecccEEEEe
Q 036317            9 GGDVSDANEVKLSND---GRLMLLTTLEGHIHVLHSFQ-GTL-----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEG   79 (106)
Q Consensus         9 ~~~~~~v~~v~~spd---g~~l~~~~~~~~i~l~d~~~-~~~-----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~   79 (106)
                      .+|.+.|++++|+|+   |+++++++.|+.+++||..+ +..     ..+...+..++|+|++           ++|+++
T Consensus        36 ~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-----------~~l~s~  104 (368)
T 3mmy_A           36 SSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDG-----------SKVFTA  104 (368)
T ss_dssp             SCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTS-----------SEEEEE
T ss_pred             cCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCC-----------CEEEEE
Confidence            567789999999999   69999999999999999987 443     4467788899999999           999999


Q ss_pred             cCCCcEEEEECCCCC---------CCcEEEe--CCC
Q 036317           80 SGDGSVYAWSARSGK---------EPPVIKW--APG  104 (106)
Q Consensus        80 s~d~~i~~wd~~~~~---------~v~~i~~--sp~  104 (106)
                      +.|+.|++||+++++         .|.+++|  +|+
T Consensus       105 ~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~  140 (368)
T 3mmy_A          105 SCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPN  140 (368)
T ss_dssp             ETTSEEEEEETTTTEEEEEEECSSCEEEEEEEECSS
T ss_pred             cCCCcEEEEEcCCCCceeeccccCceEEEEEEeCCC
Confidence            999999999999887         7899999  665

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.60  E-value=1e-14  Score=103.43  Aligned_cols=88  Identities=15%  Similarity=0.205  Sum_probs=75.8

Q ss_pred             ecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCC
Q 036317            7 SDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGD   82 (106)
Q Consensus         7 ~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d   82 (106)
                      ...+|.+.|++++|+|||+++++++.|+.|++||..+++.    ..+...+..+.|+|++          +..+++++.|
T Consensus       134 ~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~----------~~~~~s~~~d  203 (357)
T 4g56_B          134 AKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGK----------DTIFLSCGED  203 (357)
T ss_dssp             EECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTC----------SSCEEEEETT
T ss_pred             ccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCC----------CceeeeeccC
Confidence            3446777999999999999999999999999999999887    4466778889999997          1378899999


Q ss_pred             CcEEEEECCCCC------------CCcEEEeCCC
Q 036317           83 GSVYAWSARSGK------------EPPVIKWAPG  104 (106)
Q Consensus        83 ~~i~~wd~~~~~------------~v~~i~~sp~  104 (106)
                      ++|++||+++++            .+.+++|+|+
T Consensus       204 g~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~  237 (357)
T 4g56_B          204 GRILLWDTRKPKPATRIDFCASDTIPTSVTWHPE  237 (357)
T ss_dssp             SCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTT
T ss_pred             CceEEEECCCCceeeeeeeccccccccchhhhhc
Confidence            999999999876            5788999986

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.60  E-value=1.7e-14  Score=101.01  Aligned_cols=84  Identities=15%  Similarity=0.296  Sum_probs=67.9

Q ss_pred             CCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCC-------ce----eccCCCcEEEEEecCCcceeeeeeecccEEEEe
Q 036317           11 DVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQG-------TL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEG   79 (106)
Q Consensus        11 ~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~-------~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~   79 (106)
                      |.+.|.+++|+|+|+++++++.|++|++||....       +.    ..+...+..++|+|++           ++|++|
T Consensus        57 h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g-----------~~las~  125 (330)
T 2hes_X           57 HKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDG-----------YYLATC  125 (330)
T ss_dssp             CCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTS-----------CEEEEE
T ss_pred             ccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCC-----------CEEEEE
Confidence            7779999999999999999999999999998532       22    3466778899999999           999999


Q ss_pred             cCCCcEEEEECCC-CC-------------CCcEEEeCCCC
Q 036317           80 SGDGSVYAWSARS-GK-------------EPPVIKWAPGS  105 (106)
Q Consensus        80 s~d~~i~~wd~~~-~~-------------~v~~i~~sp~~  105 (106)
                      +.|++|++||++. ++             .|.+++|+|+.
T Consensus       126 s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~  165 (330)
T 2hes_X          126 SRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSE  165 (330)
T ss_dssp             ETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSS
T ss_pred             eCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCC
Confidence            9999999999943 21             68899999863

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.60  E-value=2.5e-14  Score=101.25  Aligned_cols=86  Identities=14%  Similarity=0.144  Sum_probs=74.2

Q ss_pred             cCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce---ec---cCCCcEEEEEecCCcceeeeeeecccEEEEecC
Q 036317            8 DGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL---PV---SHNSTLEASFSQHLSLVALSVLILRSWVLEGSG   81 (106)
Q Consensus         8 ~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~---~~---~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~   81 (106)
                      +.+|...|++++|+|+|+++++++.|+++++||+.+++.   ..   ....+..+.|+|++           +++++|+.
T Consensus       236 ~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g-----------~~l~~g~~  304 (354)
T 2pbi_B          236 FETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSG-----------RLLFAGYN  304 (354)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTS-----------SEEEEEET
T ss_pred             ecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCC-----------CEEEEEEC
Confidence            456677999999999999999999999999999988765   11   12245679999999           99999999


Q ss_pred             CCcEEEEECCCCC----------CCcEEEeCCC
Q 036317           82 DGSVYAWSARSGK----------EPPVIKWAPG  104 (106)
Q Consensus        82 d~~i~~wd~~~~~----------~v~~i~~sp~  104 (106)
                      |++|++||+.+++          .|.+++|+|+
T Consensus       305 d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spd  337 (354)
T 2pbi_B          305 DYTINVWDVLKGSRVSILFGHENRVSTLRVSPD  337 (354)
T ss_dssp             TSCEEEEETTTCSEEEEECCCSSCEEEEEECTT
T ss_pred             CCcEEEEECCCCceEEEEECCCCcEEEEEECCC
Confidence            9999999998876          8899999996

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.59  E-value=6.7e-15  Score=104.83  Aligned_cols=76  Identities=12%  Similarity=0.163  Sum_probs=68.6

Q ss_pred             eecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecC
Q 036317            6 FSDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSG   81 (106)
Q Consensus         6 ~~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~   81 (106)
                      ..+.+|.+.|++++|+|+|+++++++.|+++++||..+++.    ..+...+..++|+|++           ++|++|+.
T Consensus        60 ~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g-----------~~las~~~  128 (380)
T 3iz6_a           60 RTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNG-----------QSVACGGL  128 (380)
T ss_dssp             EEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTS-----------SEEEECCS
T ss_pred             ecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCC-----------CEEEEeeC
Confidence            44678899999999999999999999999999999998876    4466677889999999           99999999


Q ss_pred             CCcEEEEECCC
Q 036317           82 DGSVYAWSARS   92 (106)
Q Consensus        82 d~~i~~wd~~~   92 (106)
                      |+.|++||+.+
T Consensus       129 d~~v~iw~~~~  139 (380)
T 3iz6_a          129 DSACSIFNLSS  139 (380)
T ss_dssp             SSCCEEEECCC
T ss_pred             CCcEEEEECCC
Confidence            99999999875

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.59  E-value=1.7e-14  Score=102.12  Aligned_cols=78  Identities=13%  Similarity=0.144  Sum_probs=69.5

Q ss_pred             eecCCCCCCeeEEEECCCCCeEEEEeCCCe-EEEEEcCCCce----e-c-cCCCcEEEEEecCCcceeeeeeecccEEEE
Q 036317            6 FSDGGDVSDANEVKLSNDGRLMLLTTLEGH-IHVLHSFQGTL----P-V-SHNSTLEASFSQHLSLVALSVLILRSWVLE   78 (106)
Q Consensus         6 ~~~~~~~~~v~~v~~spdg~~l~~~~~~~~-i~l~d~~~~~~----~-~-~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t   78 (106)
                      ..+.+|.+.|++++|+|||+++++++.|++ +++||..+++.    . + +...+..++|+||+           +++++
T Consensus       189 ~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~-----------~~l~s  257 (355)
T 3vu4_A          189 VLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDG-----------SKLAV  257 (355)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTS-----------CEEEE
T ss_pred             EEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCC-----------CEEEE
Confidence            445678889999999999999999999998 99999999876    3 3 66678899999999           99999


Q ss_pred             ecCCCcEEEEECCCCC
Q 036317           79 GSGDGSVYAWSARSGK   94 (106)
Q Consensus        79 ~s~d~~i~~wd~~~~~   94 (106)
                      ++.|++|++||++.+.
T Consensus       258 ~s~d~~v~iw~~~~~~  273 (355)
T 3vu4_A          258 VSDKWTLHVFEIFNDQ  273 (355)
T ss_dssp             EETTCEEEEEESSCCS
T ss_pred             EECCCEEEEEEccCCC
Confidence            9999999999998653

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.59  E-value=1.1e-14  Score=105.26  Aligned_cols=84  Identities=8%  Similarity=-0.070  Sum_probs=71.4

Q ss_pred             CCCCCeeEEEECC-CCCeEEEEeCCCeEEEEEcCCCce------eccCCCcEEEEEec-CCcceeeeeeecccEEEEecC
Q 036317           10 GDVSDANEVKLSN-DGRLMLLTTLEGHIHVLHSFQGTL------PVSHNSTLEASFSQ-HLSLVALSVLILRSWVLEGSG   81 (106)
Q Consensus        10 ~~~~~v~~v~~sp-dg~~l~~~~~~~~i~l~d~~~~~~------~~~~~~~~~~~fs~-d~~~~~~~~~~~~~~i~t~s~   81 (106)
                      .+...|++++|+| ++++|++++.||+|+|||..+++.      ..|.+.+.++.|+| ++           .+|++++.
T Consensus       117 ~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~-----------~~l~s~s~  185 (435)
T 4e54_B          117 PFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNT-----------NQFYASSM  185 (435)
T ss_dssp             ECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCT-----------TEEEEECS
T ss_pred             CCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCC-----------CEEEEEeC
Confidence            3456899999999 567899999999999999987754      34677889999998 68           89999999


Q ss_pred             CCcEEEEECCCCC------------CCcEEEeCCC
Q 036317           82 DGSVYAWSARSGK------------EPPVIKWAPG  104 (106)
Q Consensus        82 d~~i~~wd~~~~~------------~v~~i~~sp~  104 (106)
                      |++|++||++++.            .+.+++|+|+
T Consensus       186 D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (435)
T 4e54_B          186 EGTTRLQDFKGNILRVFASSDTINIWFCSLDVSAS  220 (435)
T ss_dssp             SSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETT
T ss_pred             CCEEEEeeccCCceeEEeccCCCCccEEEEEECCC
Confidence            9999999998764            5678888886

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.58  E-value=1.8e-14  Score=102.24  Aligned_cols=85  Identities=13%  Similarity=0.129  Sum_probs=72.0

Q ss_pred             CCCCCeeEEEECCCC-CeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCc
Q 036317           10 GDVSDANEVKLSNDG-RLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGS   84 (106)
Q Consensus        10 ~~~~~v~~v~~spdg-~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~   84 (106)
                      .+...+.+++|+|++ +++++++.|+.|++||+.+++.    ..+...+..++|+|++          +++|++|+.|++
T Consensus       224 ~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~----------~~~lasgs~D~~  293 (357)
T 4g56_B          224 ASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHS----------SPFLASISEDCT  293 (357)
T ss_dssp             TCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSS----------SCCEEEEETTSC
T ss_pred             cccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCC----------CCEEEEEeCCCE
Confidence            344579999999985 5677889999999999998876    4466778899999987          247899999999


Q ss_pred             EEEEECCCCC---------CCcEEEeCCC
Q 036317           85 VYAWSARSGK---------EPPVIKWAPG  104 (106)
Q Consensus        85 i~~wd~~~~~---------~v~~i~~sp~  104 (106)
                      |++||+++++         .|.+++|+|.
T Consensus       294 i~iwd~~~~~~~~~~~H~~~V~~vafsP~  322 (357)
T 4g56_B          294 VAVLDADFSEVFRDLSHRDFVTGVAWSPL  322 (357)
T ss_dssp             EEEECTTSCEEEEECCCSSCEEEEEECSS
T ss_pred             EEEEECCCCcEeEECCCCCCEEEEEEeCC
Confidence            9999999987         8899999983

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.58  E-value=2.9e-14  Score=99.90  Aligned_cols=84  Identities=12%  Similarity=0.056  Sum_probs=71.8

Q ss_pred             CCCCCeeEEEECC--CCCeEEEEeCCCeEEEEEcCCCce----ec-cCCCcEEEEEecCCcceeeeeeecccEEEEecCC
Q 036317           10 GDVSDANEVKLSN--DGRLMLLTTLEGHIHVLHSFQGTL----PV-SHNSTLEASFSQHLSLVALSVLILRSWVLEGSGD   82 (106)
Q Consensus        10 ~~~~~v~~v~~sp--dg~~l~~~~~~~~i~l~d~~~~~~----~~-~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d   82 (106)
                      ++.++|.+++|+|  +++++++++.|+++++||..+++.    .. +...+..++|+|++           +++++|+.|
T Consensus       123 ~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg-----------~~lasg~~d  191 (343)
T 3lrv_A          123 DSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDS-----------LLLALYSPD  191 (343)
T ss_dssp             CCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTS-----------CEEEEECTT
T ss_pred             CCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCC-----------CEEEEEcCC
Confidence            3446899999999  999999999999999999998877    12 33357789999999           999999999


Q ss_pred             CcEEEEECCCCC------------CCcEEEeCCC
Q 036317           83 GSVYAWSARSGK------------EPPVIKWAPG  104 (106)
Q Consensus        83 ~~i~~wd~~~~~------------~v~~i~~sp~  104 (106)
                      +.|++||+++++            .|.+++|+|+
T Consensus       192 g~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~  225 (343)
T 3lrv_A          192 GILDVYNLSSPDQASSRFPVDEEAKIKEVKFADN  225 (343)
T ss_dssp             SCEEEEESSCTTSCCEECCCCTTSCEEEEEECTT
T ss_pred             CEEEEEECCCCCCCccEEeccCCCCEEEEEEeCC
Confidence            999999999876            6788899886

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.58  E-value=8.4e-15  Score=104.29  Aligned_cols=85  Identities=9%  Similarity=0.097  Sum_probs=72.8

Q ss_pred             CCCCCeeEEEECCCCCeEEEEeCCC----eEEEEEcCCCce--------eccCCCcEEEEEecCCcceeeeeeecccEEE
Q 036317           10 GDVSDANEVKLSNDGRLMLLTTLEG----HIHVLHSFQGTL--------PVSHNSTLEASFSQHLSLVALSVLILRSWVL   77 (106)
Q Consensus        10 ~~~~~v~~v~~spdg~~l~~~~~~~----~i~l~d~~~~~~--------~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~   77 (106)
                      ++...|++++|+|||+++++++.++    .+.+||......        ..+...+.+++|+|||           ++|+
T Consensus       217 ~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg-----------~~la  285 (365)
T 4h5i_A          217 DKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKG-----------ELAV  285 (365)
T ss_dssp             CTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTS-----------CEEE
T ss_pred             CCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCC-----------CceE
Confidence            4455899999999999999998776    688898876653        3456678899999999           9999


Q ss_pred             EecCCCcEEEEECCCCC-----------CCcEEEeCCCC
Q 036317           78 EGSGDGSVYAWSARSGK-----------EPPVIKWAPGS  105 (106)
Q Consensus        78 t~s~d~~i~~wd~~~~~-----------~v~~i~~sp~~  105 (106)
                      +|+.|++|+|||+++++           .|.+++|+|+.
T Consensus       286 sgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg  324 (365)
T 4h5i_A          286 LASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDS  324 (365)
T ss_dssp             EEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTS
T ss_pred             EEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCC
Confidence            99999999999999987           78999999974

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.58  E-value=3.3e-14  Score=97.93  Aligned_cols=77  Identities=14%  Similarity=0.202  Sum_probs=68.1

Q ss_pred             ecCCCCCCeeEEEECCC-CCeEEEEeCCCeEEEEEcCCCce---------eccCCCcEEEEEecCCcceeeeeeecccEE
Q 036317            7 SDGGDVSDANEVKLSND-GRLMLLTTLEGHIHVLHSFQGTL---------PVSHNSTLEASFSQHLSLVALSVLILRSWV   76 (106)
Q Consensus         7 ~~~~~~~~v~~v~~spd-g~~l~~~~~~~~i~l~d~~~~~~---------~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i   76 (106)
                      ++.+|.+.|++|+|+|+ ++++++++.|++|+|||+.+++.         ..+...+..+.|+|++           +++
T Consensus        33 tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg-----------~~l  101 (340)
T 4aow_A           33 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDG-----------QFA  101 (340)
T ss_dssp             EECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTS-----------SEE
T ss_pred             EECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCC-----------CEE
Confidence            46789999999999998 68999999999999999876543         3456778899999999           999


Q ss_pred             EEecCCCcEEEEECCCCC
Q 036317           77 LEGSGDGSVYAWSARSGK   94 (106)
Q Consensus        77 ~t~s~d~~i~~wd~~~~~   94 (106)
                      ++++.|+.|++|+...+.
T Consensus       102 ~s~~~d~~i~~~~~~~~~  119 (340)
T 4aow_A          102 LSGSWDGTLRLWDLTTGT  119 (340)
T ss_dssp             EEEETTSEEEEEETTTTE
T ss_pred             EEEcccccceEEeecccc
Confidence            999999999999999876

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.57  E-value=2.7e-14  Score=102.05  Aligned_cols=79  Identities=18%  Similarity=0.291  Sum_probs=71.8

Q ss_pred             CeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEEE
Q 036317           14 DANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWS   89 (106)
Q Consensus        14 ~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd   89 (106)
                      .|++++|+|||+++++++.|+.|++||..+++.    ..+...+.++.|+|++           +++++++.|++|++||
T Consensus       125 ~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~-----------~~l~s~s~d~~v~iwd  193 (393)
T 1erj_A          125 YIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSG-----------DKLVSGSGDRTVRIWD  193 (393)
T ss_dssp             BEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS-----------SEEEEEETTSEEEEEE
T ss_pred             eEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCC-----------CEEEEecCCCcEEEEE
Confidence            489999999999999999999999999998876    4566778899999999           9999999999999999


Q ss_pred             CCCCC---------CCcEEEeCC
Q 036317           90 ARSGK---------EPPVIKWAP  103 (106)
Q Consensus        90 ~~~~~---------~v~~i~~sp  103 (106)
                      +++++         .+.+++|+|
T Consensus       194 ~~~~~~~~~~~~~~~v~~~~~~~  216 (393)
T 1erj_A          194 LRTGQCSLTLSIEDGVTTVAVSP  216 (393)
T ss_dssp             TTTTEEEEEEECSSCEEEEEECS
T ss_pred             CCCCeeEEEEEcCCCcEEEEEEC
Confidence            99886         677888887

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.57  E-value=1.2e-14  Score=101.14  Aligned_cols=86  Identities=15%  Similarity=0.273  Sum_probs=75.1

Q ss_pred             cCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCC--ce----eccCCCcEEEEEecC--CcceeeeeeecccEEEEe
Q 036317            8 DGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQG--TL----PVSHNSTLEASFSQH--LSLVALSVLILRSWVLEG   79 (106)
Q Consensus         8 ~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~--~~----~~~~~~~~~~~fs~d--~~~~~~~~~~~~~~i~t~   79 (106)
                      +.+|.+.|.+++|+|+|+++++++.|+.|++||...+  +.    ..+...+..+.|+|+  +           ++++++
T Consensus         7 ~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-----------~~l~s~   75 (379)
T 3jrp_A            7 ANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG-----------TILASC   75 (379)
T ss_dssp             EEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGC-----------SEEEEE
T ss_pred             ecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCC-----------CEEEEe
Confidence            3577889999999999999999999999999999744  33    346677889999977  9           999999


Q ss_pred             cCCCcEEEEECCCCC------------CCcEEEeCCC
Q 036317           80 SGDGSVYAWSARSGK------------EPPVIKWAPG  104 (106)
Q Consensus        80 s~d~~i~~wd~~~~~------------~v~~i~~sp~  104 (106)
                      +.|+.|++||+++++            .|.+++|+|.
T Consensus        76 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~  112 (379)
T 3jrp_A           76 SYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPH  112 (379)
T ss_dssp             ETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCG
T ss_pred             ccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCC
Confidence            999999999999874            7899999986

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.57  E-value=2.6e-14  Score=105.25  Aligned_cols=84  Identities=20%  Similarity=0.299  Sum_probs=73.4

Q ss_pred             cCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCC
Q 036317            8 DGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDG   83 (106)
Q Consensus         8 ~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~   83 (106)
                      +.++...|.+++|+|||+++++++.|+.|++||. +++.    ..+...+..++|+||+           ++|++++.|+
T Consensus       463 ~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg-----------~~l~s~~~dg  530 (577)
T 2ymu_A          463 LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDG-----------QTIASASDDK  530 (577)
T ss_dssp             EECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTS-----------SCEEEEETTS
T ss_pred             EcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCC-----------CEEEEEECcC
Confidence            3466779999999999999999999999999995 5554    4567788899999999           9999999999


Q ss_pred             cEEEEECCCCC----------CCcEEEeCCC
Q 036317           84 SVYAWSARSGK----------EPPVIKWAPG  104 (106)
Q Consensus        84 ~i~~wd~~~~~----------~v~~i~~sp~  104 (106)
                      .|++||+ +++          .|.+++|+|+
T Consensus       531 ~v~lwd~-~~~~~~~~~~h~~~v~~~~fs~d  560 (577)
T 2ymu_A          531 TVKLWNR-NGQLLQTLTGHSSSVWGVAFSPD  560 (577)
T ss_dssp             EEEEECT-TSCEEEEEECCSSCEEEEEECTT
T ss_pred             EEEEEeC-CCCEEEEEcCCCCCEEEEEEcCC
Confidence            9999996 455          8899999986

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.57  E-value=3.8e-14  Score=106.66  Aligned_cols=86  Identities=12%  Similarity=0.205  Sum_probs=75.1

Q ss_pred             cCCCCCCeeEEEECCCCC-eEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCC
Q 036317            8 DGGDVSDANEVKLSNDGR-LMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGD   82 (106)
Q Consensus         8 ~~~~~~~v~~v~~spdg~-~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d   82 (106)
                      +.+|...|++++|+|++. .+++++.|+++++||..+++.    ..|...+.+++|+||+           +++++++.|
T Consensus       143 l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg-----------~~las~s~D  211 (611)
T 1nr0_A          143 LTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDG-----------SLFASTGGD  211 (611)
T ss_dssp             CCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTS-----------SEEEEEETT
T ss_pred             ecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCC-----------CEEEEEECC
Confidence            456778999999999997 489999999999999888765    4567788899999999           999999999


Q ss_pred             CcEEEEECCCCC-----------------CCcEEEeCCC
Q 036317           83 GSVYAWSARSGK-----------------EPPVIKWAPG  104 (106)
Q Consensus        83 ~~i~~wd~~~~~-----------------~v~~i~~sp~  104 (106)
                      ++|++||+++++                 .|.+++|+|+
T Consensus       212 ~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spd  250 (611)
T 1nr0_A          212 GTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPD  250 (611)
T ss_dssp             SCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTT
T ss_pred             CcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCC
Confidence            999999987653                 5778999986

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.56  E-value=2.3e-14  Score=109.26  Aligned_cols=87  Identities=14%  Similarity=0.216  Sum_probs=78.5

Q ss_pred             cCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCC
Q 036317            8 DGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDG   83 (106)
Q Consensus         8 ~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~   83 (106)
                      +.+|.+.|.+++|+|||+++++++.++.|++||..+++.    ..+.+.+..+.|+|++           ++|++++.|+
T Consensus         9 ~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~-----------~~l~~~~~dg   77 (814)
T 3mkq_A            9 FSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARK-----------NWIIVGSDDF   77 (814)
T ss_dssp             EEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGG-----------TEEEEEETTS
T ss_pred             eecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCC-----------CEEEEEeCCC
Confidence            456778999999999999999999999999999998876    4467788899999999           9999999999


Q ss_pred             cEEEEECCCCC----------CCcEEEeCCCC
Q 036317           84 SVYAWSARSGK----------EPPVIKWAPGS  105 (106)
Q Consensus        84 ~i~~wd~~~~~----------~v~~i~~sp~~  105 (106)
                      .|++||+++++          .|.+++|+|+.
T Consensus        78 ~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~  109 (814)
T 3mkq_A           78 RIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTK  109 (814)
T ss_dssp             EEEEEETTTCCEEEEEECCSSCEEEEEECSSS
T ss_pred             eEEEEECCCCcEEEEEecCCCCEEEEEEeCCC
Confidence            99999999987          78899999863

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.56  E-value=4.9e-14  Score=112.05  Aligned_cols=88  Identities=17%  Similarity=0.259  Sum_probs=79.6

Q ss_pred             eecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecC
Q 036317            6 FSDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSG   81 (106)
Q Consensus         6 ~~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~   81 (106)
                      ..+.+|.+.|.+++|+|||+++++++.|++|++||..+++.    ..+...+.+++|+|++           +++++++.
T Consensus       609 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~-----------~~l~s~~~  677 (1249)
T 3sfz_A          609 LVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDD-----------SYIATCSA  677 (1249)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTS-----------SEEEEEET
T ss_pred             EEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCC-----------CEEEEEeC
Confidence            44567888999999999999999999999999999999876    4567788899999999           99999999


Q ss_pred             CCcEEEEECCCCC----------CCcEEEeCCC
Q 036317           82 DGSVYAWSARSGK----------EPPVIKWAPG  104 (106)
Q Consensus        82 d~~i~~wd~~~~~----------~v~~i~~sp~  104 (106)
                      |++|++||+++++          .|.+++|+|.
T Consensus       678 d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~  710 (1249)
T 3sfz_A          678 DKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNK  710 (1249)
T ss_dssp             TSEEEEEETTTCCEEEEEECCSSCEEEEEECSS
T ss_pred             CCeEEEEECCCCceEEEEcCCCCcEEEEEEecC
Confidence            9999999999987          7889999884

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.56  E-value=9.8e-14  Score=99.16  Aligned_cols=87  Identities=13%  Similarity=0.169  Sum_probs=75.6

Q ss_pred             ecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce---eccCCCcEEEEEec-CCcceeeeeeecccEEEEecCC
Q 036317            7 SDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL---PVSHNSTLEASFSQ-HLSLVALSVLILRSWVLEGSGD   82 (106)
Q Consensus         7 ~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~---~~~~~~~~~~~fs~-d~~~~~~~~~~~~~~i~t~s~d   82 (106)
                      .+.+|...|.+++|+|+|+++++++.|+++++||+.+++.   ......+..+.|+| ++           +++++|+.|
T Consensus       160 ~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-----------~~l~~~s~d  228 (393)
T 1erj_A          160 ILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDG-----------KYIAAGSLD  228 (393)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTC-----------CEEEEEETT
T ss_pred             EEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcCCCcEEEEEECCCC-----------CEEEEEcCC
Confidence            3457778999999999999999999999999999999876   33455677899999 89           999999999


Q ss_pred             CcEEEEECCCCC-----------------CCcEEEeCCC
Q 036317           83 GSVYAWSARSGK-----------------EPPVIKWAPG  104 (106)
Q Consensus        83 ~~i~~wd~~~~~-----------------~v~~i~~sp~  104 (106)
                      ++|++||+++++                 .|.+++|+|+
T Consensus       229 ~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~  267 (393)
T 1erj_A          229 RAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRD  267 (393)
T ss_dssp             SCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTT
T ss_pred             CcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCC
Confidence            999999998764                 5778899886

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.56  E-value=3e-14  Score=108.22  Aligned_cols=86  Identities=19%  Similarity=0.300  Sum_probs=76.3

Q ss_pred             cCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCC
Q 036317            8 DGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDG   83 (106)
Q Consensus         8 ~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~   83 (106)
                      +.+|...|.+++|+|+|+++++++.|++|++||+.+++.    ..|...+.+++|+|++           ++|++++.|+
T Consensus       426 ~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~-----------~~l~s~s~D~  494 (694)
T 3dm0_A          426 LTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDN-----------RQIVSASRDR  494 (694)
T ss_dssp             EECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTS-----------SCEEEEETTS
T ss_pred             ecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCC-----------CEEEEEeCCC
Confidence            456778999999999999999999999999999998876    4577788899999999           9999999999


Q ss_pred             cEEEEECCCCC-------------CCcEEEeCCC
Q 036317           84 SVYAWSARSGK-------------EPPVIKWAPG  104 (106)
Q Consensus        84 ~i~~wd~~~~~-------------~v~~i~~sp~  104 (106)
                      +|++||+....             .|.+++|+|+
T Consensus       495 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~  528 (694)
T 3dm0_A          495 TIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPN  528 (694)
T ss_dssp             CEEEECTTSCEEEEECSSTTSCSSCEEEEEECSC
T ss_pred             EEEEEECCCCcceeeccCCCCCCCcEEEEEEeCC
Confidence            99999985432             5899999986

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.55  E-value=5.2e-14  Score=101.65  Aligned_cols=88  Identities=13%  Similarity=0.119  Sum_probs=73.3

Q ss_pred             eecCCCCCCeeEEEECC-CCCeEEEEeCCCeEEEEEcCCCce---e---ccCCCcEEEEEecCCcceeeeeeecccEEEE
Q 036317            6 FSDGGDVSDANEVKLSN-DGRLMLLTTLEGHIHVLHSFQGTL---P---VSHNSTLEASFSQHLSLVALSVLILRSWVLE   78 (106)
Q Consensus         6 ~~~~~~~~~v~~v~~sp-dg~~l~~~~~~~~i~l~d~~~~~~---~---~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t   78 (106)
                      .+..+|.+.|++++|+| +++++++++.|++|++||+.++..   .   .....+..+.|+|++           ++|++
T Consensus       158 ~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~l~~  226 (435)
T 4e54_B          158 IKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASS-----------RMVVT  226 (435)
T ss_dssp             ECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTT-----------TEEEE
T ss_pred             EEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCC-----------CEEEE
Confidence            34457788999999998 789999999999999999987765   1   122345678999999           99999


Q ss_pred             ecCCCcEEEEECCCCC---------CCcEEEeCCC
Q 036317           79 GSGDGSVYAWSARSGK---------EPPVIKWAPG  104 (106)
Q Consensus        79 ~s~d~~i~~wd~~~~~---------~v~~i~~sp~  104 (106)
                      |+.||.|++||++...         .|.+++|+|.
T Consensus       227 g~~dg~i~~wd~~~~~~~~~~~h~~~v~~v~~~p~  261 (435)
T 4e54_B          227 GDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPC  261 (435)
T ss_dssp             ECSSSBEEEEESSSCBCCCSBCCSSCEEEEEECTT
T ss_pred             EeCCCcEeeeccCcceeEEEecccceEEeeeecCC
Confidence            9999999999997543         7899999986

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.55  E-value=9.6e-14  Score=95.78  Aligned_cols=87  Identities=18%  Similarity=0.290  Sum_probs=74.1

Q ss_pred             ecCCCCCCeeEEEECCC--CCeEEEEeCCCeEEEEEcCCCce------eccCCCcEEEEEecC--CcceeeeeeecccEE
Q 036317            7 SDGGDVSDANEVKLSND--GRLMLLTTLEGHIHVLHSFQGTL------PVSHNSTLEASFSQH--LSLVALSVLILRSWV   76 (106)
Q Consensus         7 ~~~~~~~~v~~v~~spd--g~~l~~~~~~~~i~l~d~~~~~~------~~~~~~~~~~~fs~d--~~~~~~~~~~~~~~i   76 (106)
                      .+.+|.++|.+++|+|+  |+++++++.|++|++||..+++.      ..+...+..++|+|+  +           .++
T Consensus        48 ~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g-----------~~l  116 (297)
T 2pm7_B           48 TLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYG-----------PML  116 (297)
T ss_dssp             EECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGC-----------SEE
T ss_pred             EEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCC-----------cEE
Confidence            44677889999999864  89999999999999999988753      335667888999998  8           899


Q ss_pred             EEecCCCcEEEEECCCCC------------CCcEEEeCCC
Q 036317           77 LEGSGDGSVYAWSARSGK------------EPPVIKWAPG  104 (106)
Q Consensus        77 ~t~s~d~~i~~wd~~~~~------------~v~~i~~sp~  104 (106)
                      ++++.|++|++||++++.            .|.+++|+|.
T Consensus       117 ~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~  156 (297)
T 2pm7_B          117 LVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPA  156 (297)
T ss_dssp             EEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCC
T ss_pred             EEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCC
Confidence            999999999999998753            5788999985

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.54  E-value=8.7e-14  Score=98.72  Aligned_cols=75  Identities=16%  Similarity=0.278  Sum_probs=68.6

Q ss_pred             CCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCc
Q 036317            9 GGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGS   84 (106)
Q Consensus         9 ~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~   84 (106)
                      .+|.+.|.+++|+|+++++++++.|+.+++||+.+++.    ..+...+..++|+|++           +++++++.|++
T Consensus       136 ~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-----------~~l~s~~~d~~  204 (420)
T 3vl1_A          136 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRG-----------RNVLSASLDGT  204 (420)
T ss_dssp             TSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTT-----------TEEEEEETTSC
T ss_pred             ccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCC-----------CEEEEEcCCCc
Confidence            46778999999999999999999999999999998876    4567788899999999           99999999999


Q ss_pred             EEEEECCCCC
Q 036317           85 VYAWSARSGK   94 (106)
Q Consensus        85 i~~wd~~~~~   94 (106)
                      |++||+++++
T Consensus       205 v~iwd~~~~~  214 (420)
T 3vl1_A          205 IRLWECGTGT  214 (420)
T ss_dssp             EEEEETTTTE
T ss_pred             EEEeECCCCc
Confidence            9999999886

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.54  E-value=7.5e-14  Score=102.81  Aligned_cols=87  Identities=13%  Similarity=0.132  Sum_probs=77.3

Q ss_pred             ecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----ec-cCCCcEEEEEec----------CCcceeeeeee
Q 036317            7 SDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PV-SHNSTLEASFSQ----------HLSLVALSVLI   71 (106)
Q Consensus         7 ~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~-~~~~~~~~~fs~----------d~~~~~~~~~~   71 (106)
                      .+.++...|.+++|+|+|+++++++.|+.+++||..+++.    .. +...+..++|+|          ++         
T Consensus       483 ~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~---------  553 (615)
T 1pgu_A          483 LKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEE---------  553 (615)
T ss_dssp             CSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSC---------
T ss_pred             ccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccccCC---------
Confidence            3456677999999999999999999999999999999887    33 666788999999          99         


Q ss_pred             cccEEEEecCCCcEEEEECCCC-C----------CCcEEEeCCC
Q 036317           72 LRSWVLEGSGDGSVYAWSARSG-K----------EPPVIKWAPG  104 (106)
Q Consensus        72 ~~~~i~t~s~d~~i~~wd~~~~-~----------~v~~i~~sp~  104 (106)
                        ++|++++.|+.|++||++++ +          .|.+++|+|+
T Consensus       554 --~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~  595 (615)
T 1pgu_A          554 --DLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETP  595 (615)
T ss_dssp             --CEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEET
T ss_pred             --CEEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcCC
Confidence              99999999999999999987 3          7889999986

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.54  E-value=1.5e-13  Score=97.85  Aligned_cols=87  Identities=9%  Similarity=0.176  Sum_probs=74.1

Q ss_pred             cCCCCCCeeEEEECC-CCCeEEEEeCCCeEEEEEcCCCc-------e----eccCCCcEEEEEecCCcceeeeeeecccE
Q 036317            8 DGGDVSDANEVKLSN-DGRLMLLTTLEGHIHVLHSFQGT-------L----PVSHNSTLEASFSQHLSLVALSVLILRSW   75 (106)
Q Consensus         8 ~~~~~~~v~~v~~sp-dg~~l~~~~~~~~i~l~d~~~~~-------~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~   75 (106)
                      +.+|.+.|.+++|+| +++++++++.|+.|++||..++.       .    ..+...+..+.|+|++          +.+
T Consensus        77 ~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~----------~~~  146 (402)
T 2aq5_A           77 VCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTA----------QNV  146 (402)
T ss_dssp             BCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSB----------TTE
T ss_pred             EecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCC----------CCE
Confidence            346778999999999 99999999999999999998873       2    4466778899999997          148


Q ss_pred             EEEecCCCcEEEEECCCCC------------CCcEEEeCCC
Q 036317           76 VLEGSGDGSVYAWSARSGK------------EPPVIKWAPG  104 (106)
Q Consensus        76 i~t~s~d~~i~~wd~~~~~------------~v~~i~~sp~  104 (106)
                      +++++.|++|++||+++++            .|.+++|+|+
T Consensus       147 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~  187 (402)
T 2aq5_A          147 LLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRD  187 (402)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTT
T ss_pred             EEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCC
Confidence            9999999999999998875            5788899885

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.53  E-value=6.1e-14  Score=97.63  Aligned_cols=83  Identities=11%  Similarity=0.266  Sum_probs=74.2

Q ss_pred             CCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCc--e----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCc
Q 036317           11 DVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGT--L----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGS   84 (106)
Q Consensus        11 ~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~--~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~   84 (106)
                      +.++|.+++|+|+|+++++++.++.+++||..+++  .    ..+...+..+.|+|++           +++++++.|+.
T Consensus         7 ~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-----------~~l~~~~~dg~   75 (372)
T 1k8k_C            7 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDS-----------NRIVTCGTDRN   75 (372)
T ss_dssp             CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTT-----------TEEEEEETTSC
T ss_pred             cCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCC-----------CEEEEEcCCCe
Confidence            56799999999999999999999999999999885  3    4466778899999999           99999999999


Q ss_pred             EEEEECCCCC------------CCcEEEeCCC
Q 036317           85 VYAWSARSGK------------EPPVIKWAPG  104 (106)
Q Consensus        85 i~~wd~~~~~------------~v~~i~~sp~  104 (106)
                      |++||+++++            .+.+++|+|+
T Consensus        76 i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~  107 (372)
T 1k8k_C           76 AYVWTLKGRTWKPTLVILRINRAARCVRWAPN  107 (372)
T ss_dssp             EEEEEEETTEEEEEEECCCCSSCEEEEEECTT
T ss_pred             EEEEECCCCeeeeeEEeecCCCceeEEEECCC
Confidence            9999998774            7889999886

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.53  E-value=1.4e-13  Score=95.20  Aligned_cols=83  Identities=14%  Similarity=0.148  Sum_probs=73.7

Q ss_pred             CCCCeeEEEECCC----CCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEec-CCcceeeeeeecccEEEEecC
Q 036317           11 DVSDANEVKLSND----GRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQ-HLSLVALSVLILRSWVLEGSG   81 (106)
Q Consensus        11 ~~~~v~~v~~spd----g~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~-d~~~~~~~~~~~~~~i~t~s~   81 (106)
                      +...|.+++|+|+    |+++++++.|+.|++||..+++.    ..+...+..+.|+| ++           +++++++.
T Consensus        68 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-----------~~l~s~~~  136 (366)
T 3k26_A           68 ADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDP-----------NLLLSVSK  136 (366)
T ss_dssp             TTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCT-----------TEEEEEET
T ss_pred             CCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCC-----------CEEEEEeC
Confidence            4568999999999    67899999999999999998876    44667788999999 89           99999999


Q ss_pred             CCcEEEEECCCCC-------------CCcEEEeCCC
Q 036317           82 DGSVYAWSARSGK-------------EPPVIKWAPG  104 (106)
Q Consensus        82 d~~i~~wd~~~~~-------------~v~~i~~sp~  104 (106)
                      |+.|++||+++++             .|.+++|+|+
T Consensus       137 dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~  172 (366)
T 3k26_A          137 DHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL  172 (366)
T ss_dssp             TSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTT
T ss_pred             CCeEEEEEeecCeEEEEecccccccCceeEEEECCC
Confidence            9999999999775             7788999886

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.53  E-value=2.7e-13  Score=92.91  Aligned_cols=84  Identities=13%  Similarity=0.156  Sum_probs=73.4

Q ss_pred             CCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce------eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCC
Q 036317           10 GDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL------PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDG   83 (106)
Q Consensus        10 ~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~------~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~   83 (106)
                      ++...|.+++|+|+++++++++.++.+++||..+++.      ..+...+..+.|+|++           +++++++.|+
T Consensus        95 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----------~~l~~~~~dg  163 (337)
T 1gxr_A           95 NRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDS-----------KVCFSCCSDG  163 (337)
T ss_dssp             CTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTS-----------SEEEEEETTS
T ss_pred             CCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCC-----------CEEEEEeCCC
Confidence            5667899999999999999999999999999988763      3355667889999999           9999999999


Q ss_pred             cEEEEECCCCC----------CCcEEEeCCC
Q 036317           84 SVYAWSARSGK----------EPPVIKWAPG  104 (106)
Q Consensus        84 ~i~~wd~~~~~----------~v~~i~~sp~  104 (106)
                      .|++||+++++          .+.+++|+|+
T Consensus       164 ~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~  194 (337)
T 1gxr_A          164 NIAVWDLHNQTLVRQFQGHTDGASCIDISND  194 (337)
T ss_dssp             CEEEEETTTTEEEEEECCCSSCEEEEEECTT
T ss_pred             cEEEEeCCCCceeeeeecccCceEEEEECCC
Confidence            99999999876          7888999886

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.52  E-value=4.3e-14  Score=101.26  Aligned_cols=76  Identities=7%  Similarity=0.107  Sum_probs=67.6

Q ss_pred             cCCCCCCeeEEEECC--------CCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeeccc-
Q 036317            8 DGGDVSDANEVKLSN--------DGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRS-   74 (106)
Q Consensus         8 ~~~~~~~v~~v~~sp--------dg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~-   74 (106)
                      +.+|.+.|++++|+|        ||++|++++.|++++|||+.++..    ..++..+.+++|+|++           . 
T Consensus       132 ~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~-----------~~  200 (393)
T 4gq1_A          132 KSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSN-----------PN  200 (393)
T ss_dssp             TTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTE-----------EE
T ss_pred             cCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCC-----------Cc
Confidence            467888999999998        899999999999999999987654    4577788899999987           5 


Q ss_pred             EEEEecCCCcEEEEECCCCC
Q 036317           75 WVLEGSGDGSVYAWSARSGK   94 (106)
Q Consensus        75 ~i~t~s~d~~i~~wd~~~~~   94 (106)
                      ++++++.|++|++||+++++
T Consensus       201 ~l~~~~~d~~v~~wd~~t~~  220 (393)
T 4gq1_A          201 QLIVGERNGNIRIFDWTLNL  220 (393)
T ss_dssp             EEEEEETTSEEEEEETTCCC
T ss_pred             eEEecCCCCEEEEEECCCCc
Confidence            79999999999999999876

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.52  E-value=1.3e-13  Score=104.74  Aligned_cols=88  Identities=11%  Similarity=0.174  Sum_probs=76.2

Q ss_pred             ecCCCCCCeeEEEECCCC-CeEEEEeCCCeEEEEEcCCCce---------eccCCCcEEEEEecCCcceeeeeeecccEE
Q 036317            7 SDGGDVSDANEVKLSNDG-RLMLLTTLEGHIHVLHSFQGTL---------PVSHNSTLEASFSQHLSLVALSVLILRSWV   76 (106)
Q Consensus         7 ~~~~~~~~v~~v~~spdg-~~l~~~~~~~~i~l~d~~~~~~---------~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i   76 (106)
                      .+.+|.+.|++++|+|++ +++++++.|++|++||+.+...         ..|...+.+++|+|++           ++|
T Consensus       377 ~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g-----------~~l  445 (694)
T 3dm0_A          377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDG-----------QFA  445 (694)
T ss_dssp             EEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTS-----------SEE
T ss_pred             hcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCC-----------CEE
Confidence            356889999999999875 7889999999999999875421         4567788899999999           999


Q ss_pred             EEecCCCcEEEEECCCCC----------CCcEEEeCCCC
Q 036317           77 LEGSGDGSVYAWSARSGK----------EPPVIKWAPGS  105 (106)
Q Consensus        77 ~t~s~d~~i~~wd~~~~~----------~v~~i~~sp~~  105 (106)
                      ++|+.|++|++||+.+++          .|.+++|+|+.
T Consensus       446 ~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~  484 (694)
T 3dm0_A          446 LSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDN  484 (694)
T ss_dssp             EEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTS
T ss_pred             EEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCC
Confidence            999999999999999886          78999999863

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.52  E-value=4.2e-14  Score=99.24  Aligned_cols=88  Identities=9%  Similarity=0.026  Sum_probs=68.6

Q ss_pred             eecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCc---e----eccCCCcEEEEEecCCcceeeeeeecccEEEE
Q 036317            6 FSDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGT---L----PVSHNSTLEASFSQHLSLVALSVLILRSWVLE   78 (106)
Q Consensus         6 ~~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~---~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t   78 (106)
                      ..+.+|.+.|.+++|+|+|+++++++.|+.+++||..+++   .    ..+...+..+.|+|++           +++++
T Consensus        49 ~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----------~~l~~  117 (377)
T 3dwl_C           49 RTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNE-----------DKFAV  117 (377)
T ss_dssp             CCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTS-----------SCCEE
T ss_pred             EEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCC-----------CEEEE
Confidence            3445677899999999999999999999999999999877   2    3466678889999999           99999


Q ss_pred             ecCCCcEEEEECCCCC--------------CCcEEEeCCC
Q 036317           79 GSGDGSVYAWSARSGK--------------EPPVIKWAPG  104 (106)
Q Consensus        79 ~s~d~~i~~wd~~~~~--------------~v~~i~~sp~  104 (106)
                      ++.|+.|++||+++++              .|.+++|+|+
T Consensus       118 ~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~  157 (377)
T 3dwl_C          118 GSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPN  157 (377)
T ss_dssp             EESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTT
T ss_pred             EecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCC
Confidence            9999999999998763              5788999886

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.52  E-value=1.3e-14  Score=101.82  Aligned_cols=82  Identities=11%  Similarity=0.226  Sum_probs=68.3

Q ss_pred             CCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCC--ce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcE
Q 036317           12 VSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQG--TL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSV   85 (106)
Q Consensus        12 ~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~--~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i   85 (106)
                      .++|++++|+|+|+++++++.|+.+++||..++  +.    ..+...+..+.|+|++           ++|++++.|++|
T Consensus        11 ~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~-----------~~l~s~s~d~~v   79 (377)
T 3dwl_C           11 PKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKS-----------NRIVTCSQDRNA   79 (377)
T ss_dssp             SSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTT-----------CCEEEEETTSSE
T ss_pred             CCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCC-----------CEEEEEeCCCeE
Confidence            568999999999999999999999999999987  33    4566778899999999           999999999999


Q ss_pred             EEEECCCCC-------------CCcEEEeCCC
Q 036317           86 YAWSARSGK-------------EPPVIKWAPG  104 (106)
Q Consensus        86 ~~wd~~~~~-------------~v~~i~~sp~  104 (106)
                      ++||+++++             .|.+++|+|+
T Consensus        80 ~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~  111 (377)
T 3dwl_C           80 YVYEKRPDGTWKQTLVLLRLNRAATFVRWSPN  111 (377)
T ss_dssp             EEC------CCCCEEECCCCSSCEEEEECCTT
T ss_pred             EEEEcCCCCceeeeeEecccCCceEEEEECCC
Confidence            999998754             7888999886

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.51  E-value=3e-13  Score=92.65  Aligned_cols=87  Identities=17%  Similarity=0.257  Sum_probs=76.3

Q ss_pred             ecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCC
Q 036317            7 SDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGD   82 (106)
Q Consensus         7 ~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d   82 (106)
                      .+..+...|.+++|+|+++++++++.++.+++||..+++.    ..+...+..+.|+|++           +++++++.|
T Consensus       136 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~-----------~~l~~~~~d  204 (337)
T 1gxr_A          136 ELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDG-----------TKLWTGGLD  204 (337)
T ss_dssp             EEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS-----------SEEEEEETT
T ss_pred             ecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCC-----------CEEEEEecC
Confidence            3445566899999999999999999999999999998876    3456678889999999           999999999


Q ss_pred             CcEEEEECCCCC---------CCcEEEeCCC
Q 036317           83 GSVYAWSARSGK---------EPPVIKWAPG  104 (106)
Q Consensus        83 ~~i~~wd~~~~~---------~v~~i~~sp~  104 (106)
                      +.|++||+++++         .+.+++|+|+
T Consensus       205 g~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~  235 (337)
T 1gxr_A          205 NTVRSWDLREGRQLQQHDFTSQIFSLGYCPT  235 (337)
T ss_dssp             SEEEEEETTTTEEEEEEECSSCEEEEEECTT
T ss_pred             CcEEEEECCCCceEeeecCCCceEEEEECCC
Confidence            999999999887         7888899886

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.51  E-value=2e-13  Score=94.20  Aligned_cols=88  Identities=16%  Similarity=0.115  Sum_probs=75.0

Q ss_pred             eeec-CCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCc----e---eccCCCcEEEEEecCCcceeeeeeeccc-E
Q 036317            5 IFSD-GGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGT----L---PVSHNSTLEASFSQHLSLVALSVLILRS-W   75 (106)
Q Consensus         5 ~~~~-~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~----~---~~~~~~~~~~~fs~d~~~~~~~~~~~~~-~   75 (106)
                      .+++ .+|.+.|.+++|+|+|+++++++.|+.+++||..+++    .   ..+...+..++|+|++           + +
T Consensus         3 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----------~~~   71 (342)
T 1yfq_A            3 IVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNT-----------DLQ   71 (342)
T ss_dssp             EEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESS-----------SEE
T ss_pred             ceecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCC-----------CcE
Confidence            3444 4566799999999999999999999999999998877    3   4466678889999999           9 9


Q ss_pred             EEEecCCCcEEEEEC-CCCC-----------CCcEEEeCC
Q 036317           76 VLEGSGDGSVYAWSA-RSGK-----------EPPVIKWAP  103 (106)
Q Consensus        76 i~t~s~d~~i~~wd~-~~~~-----------~v~~i~~sp  103 (106)
                      +++|+.|+.|++||+ ++++           .|.+++|+|
T Consensus        72 l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~  111 (342)
T 1yfq_A           72 IYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYG  111 (342)
T ss_dssp             EEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEET
T ss_pred             EEEEcCCCeEEEEEeccCCceEeccccCCCCceEEEEeCC
Confidence            999999999999999 7654           567888876

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.51  E-value=1.9e-13  Score=93.34  Aligned_cols=67  Identities=13%  Similarity=0.269  Sum_probs=57.4

Q ss_pred             eeEEEECCCCCeEEEEeCCCeEEEEEcCCCce------eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEE
Q 036317           15 ANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL------PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAW   88 (106)
Q Consensus        15 v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~------~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~w   88 (106)
                      .+.|+||+++ .| +++.|++|+|||..+++.      ..+...+.++.|+|++           +++++|+.|++|++|
T Consensus        28 ~~~l~WS~~~-~l-Avg~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~-----------~~l~sgs~Dg~v~iw   94 (318)
T 4ggc_A           28 LNLVDWSSGN-VL-AVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEG-----------NYLAVGTSSAEVQLW   94 (318)
T ss_dssp             CBCEEECTTS-EE-EEEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTS-----------SEEEEEETTSEEEEE
T ss_pred             ceEEEECCCC-EE-EEEeCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCC-----------CEEEEEECCCcEEEe
Confidence            5789999987 44 445699999999999986      2344567889999999           999999999999999


Q ss_pred             ECCCCC
Q 036317           89 SARSGK   94 (106)
Q Consensus        89 d~~~~~   94 (106)
                      |+++++
T Consensus        95 ~~~~~~  100 (318)
T 4ggc_A           95 DVQQQK  100 (318)
T ss_dssp             ETTTTE
T ss_pred             ecCCce
Confidence            999987

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.50  E-value=1.8e-13  Score=96.43  Aligned_cols=87  Identities=7%  Similarity=-0.063  Sum_probs=75.3

Q ss_pred             ecCCCCCCeeEEEECCCC-CeEEEEeCCCeEEEEEcCCCce------eccCCCcEEEEEec-CCcceeeeeeecccEEEE
Q 036317            7 SDGGDVSDANEVKLSNDG-RLMLLTTLEGHIHVLHSFQGTL------PVSHNSTLEASFSQ-HLSLVALSVLILRSWVLE   78 (106)
Q Consensus         7 ~~~~~~~~v~~v~~spdg-~~l~~~~~~~~i~l~d~~~~~~------~~~~~~~~~~~fs~-d~~~~~~~~~~~~~~i~t   78 (106)
                      .+.++.+.|.+++|+|+| +++++++.|+.|++||..+++.      ..+...+..++|+| ++           +++++
T Consensus        68 ~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-----------~~l~s  136 (383)
T 3ei3_B           68 TASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNT-----------NQLFV  136 (383)
T ss_dssp             EECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEE-----------EEEEE
T ss_pred             eccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCC-----------CEEEE
Confidence            346777899999999999 9999999999999999988766      13666788899999 78           99999


Q ss_pred             ecCCCcEEEEECCCCC------------CCcEEEeCCC
Q 036317           79 GSGDGSVYAWSARSGK------------EPPVIKWAPG  104 (106)
Q Consensus        79 ~s~d~~i~~wd~~~~~------------~v~~i~~sp~  104 (106)
                      ++.|+.|++||+++..            .+.+++|+|+
T Consensus       137 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~  174 (383)
T 3ei3_B          137 SSIRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVS  174 (383)
T ss_dssp             EETTTEEEEEETTSCEEEEEECCCCSSCCEEEEEEETT
T ss_pred             EeCCCEEEEEECCCCceEEEeccCCCCCCeEEEEECCC
Confidence            9999999999998643            4889999886

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.50  E-value=1.7e-13  Score=93.52  Aligned_cols=86  Identities=15%  Similarity=0.157  Sum_probs=72.1

Q ss_pred             eeecCCCCCCeeEEEECCCC----CeEEEEeCCCeEEEEEcCCCc-----------------------------------
Q 036317            5 IFSDGGDVSDANEVKLSNDG----RLMLLTTLEGHIHVLHSFQGT-----------------------------------   45 (106)
Q Consensus         5 ~~~~~~~~~~v~~v~~spdg----~~l~~~~~~~~i~l~d~~~~~-----------------------------------   45 (106)
                      ...+.+|.+.|.+++|+|++    +++++++.|+.|++||..++.                                   
T Consensus       207 ~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (351)
T 3f3f_A          207 AAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEE  286 (351)
T ss_dssp             EEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC-----------------------------------
T ss_pred             eeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccce
Confidence            34456778899999999998    889999999999999987641                                   


Q ss_pred             -----------e----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEEECCCCCCCcEEEe
Q 036317           46 -----------L----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSARSGKEPPVIKW  101 (106)
Q Consensus        46 -----------~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd~~~~~~v~~i~~  101 (106)
                                 .    ..+...+..+.|+|++           ++|++++.|+.|++||+++++...++.-
T Consensus       287 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~-----------~~l~s~~~dg~v~iw~~~~~~~~~~~~~  346 (351)
T 3f3f_A          287 KAELQSNLQVELLSEHDDHNGEVWSVSWNLTG-----------TILSSAGDDGKVRLWKATYSNEFKCMSV  346 (351)
T ss_dssp             ----CCSEEEEEEEEECTTSSCEEEEEECSSS-----------CCEEEEETTSCEEEEEECTTSCEEEEEE
T ss_pred             eeeecccccccEEEEEecccccEEEEEEcCCC-----------CEEEEecCCCcEEEEecCcCcchhheee
Confidence                       1    2355678889999999           9999999999999999999886666653

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.50  E-value=1.8e-13  Score=104.01  Aligned_cols=81  Identities=20%  Similarity=0.179  Sum_probs=68.2

Q ss_pred             CCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce--eccCC-----CcEEEEEecCCcceeeeeeecccEEEEecCCCc
Q 036317           12 VSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL--PVSHN-----STLEASFSQHLSLVALSVLILRSWVLEGSGDGS   84 (106)
Q Consensus        12 ~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~--~~~~~-----~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~   84 (106)
                      ...|.+++|||||+.+++++.++++++||... ..  ..++.     .+.+++|||||           ++|++|++||+
T Consensus        85 ~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~-~l~~l~~~~~~~~~sv~svafSPDG-----------~~LAsgs~DGt  152 (588)
T 2j04_A           85 VCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK-MLTNLDSKGNLSSRTYHCFEWNPIE-----------SSIVVGNEDGE  152 (588)
T ss_dssp             SCCEEEEEECSSSSCEEEEETTSCEEEEETTE-EEEECCCSSCSTTTCEEEEEECSSS-----------SCEEEEETTSE
T ss_pred             CCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc-eeeeccCCCccccccEEEEEEcCCC-----------CEEEEEcCCCE
Confidence            45799999999999999999999999999533 22  12332     37789999999           99999999999


Q ss_pred             EEEEECCCCC---------------------CCcEEEeCCC
Q 036317           85 VYAWSARSGK---------------------EPPVIKWAPG  104 (106)
Q Consensus        85 i~~wd~~~~~---------------------~v~~i~~sp~  104 (106)
                      |++||+++++                     +|.+++|+|+
T Consensus       153 VkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPd  193 (588)
T 2j04_A          153 LQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYED  193 (588)
T ss_dssp             EEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETT
T ss_pred             EEEEECCCCccccccceeeeeeecccccccccEEEEEEcCC
Confidence            9999998772                     7888999986

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.50  E-value=3.7e-13  Score=97.01  Aligned_cols=92  Identities=15%  Similarity=0.212  Sum_probs=67.1

Q ss_pred             CCeeEEEECC---CCCeEEEEeCCCeEEEEEcCCCce----eccC---CCcEEEEEecCCcceeeee-------------
Q 036317           13 SDANEVKLSN---DGRLMLLTTLEGHIHVLHSFQGTL----PVSH---NSTLEASFSQHLSLVALSV-------------   69 (106)
Q Consensus        13 ~~v~~v~~sp---dg~~l~~~~~~~~i~l~d~~~~~~----~~~~---~~~~~~~fs~d~~~~~~~~-------------   69 (106)
                      ..++.++|+|   +++++++++.|++|+|||+.+|+.    ..++   ..+..++|+|||++++...             
T Consensus       179 ~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~  258 (356)
T 2w18_A          179 PEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSP  258 (356)
T ss_dssp             CSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------C
T ss_pred             CceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCC
Confidence            3556666666   567788999999999999999986    2222   2455678999998874200             


Q ss_pred             -----------------e----ecc------------cEEEEecCCCcEEEEECCCCC-----------CCcEEEeCCC
Q 036317           70 -----------------L----ILR------------SWVLEGSGDGSVYAWSARSGK-----------EPPVIKWAPG  104 (106)
Q Consensus        70 -----------------~----~~~------------~~i~t~s~d~~i~~wd~~~~~-----------~v~~i~~sp~  104 (106)
                                       .    +..            ..+++++.|++|+|||+++|+           .+.+++|+|+
T Consensus       259 D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPD  337 (356)
T 2w18_A          259 VFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVKDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGT  337 (356)
T ss_dssp             CEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSS
T ss_pred             CcEEEEEECCCCEEEEEEEeeccCCCcceeEccccCCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCC
Confidence                             0    001            147899999999999999997           3446899996

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.50  E-value=1.4e-13  Score=95.79  Aligned_cols=88  Identities=16%  Similarity=0.225  Sum_probs=74.7

Q ss_pred             eecCCCCCCeeEEEECC--CCCeEEEEeCCCeEEEEEcCCCce------eccCCCcEEEEEecC--CcceeeeeeecccE
Q 036317            6 FSDGGDVSDANEVKLSN--DGRLMLLTTLEGHIHVLHSFQGTL------PVSHNSTLEASFSQH--LSLVALSVLILRSW   75 (106)
Q Consensus         6 ~~~~~~~~~v~~v~~sp--dg~~l~~~~~~~~i~l~d~~~~~~------~~~~~~~~~~~fs~d--~~~~~~~~~~~~~~   75 (106)
                      ..+.+|.+.|.+++|+|  +|+++++++.|++|++||..+++.      ..+...+..++|+|+  +           .+
T Consensus        51 ~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g-----------~~  119 (316)
T 3bg1_A           51 ADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYG-----------LI  119 (316)
T ss_dssp             EEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTC-----------SC
T ss_pred             EEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCC-----------cE
Confidence            34567888999999986  489999999999999999988742      346667889999998  8           89


Q ss_pred             EEEecCCCcEEEEECCCCC-------------CCcEEEeCCC
Q 036317           76 VLEGSGDGSVYAWSARSGK-------------EPPVIKWAPG  104 (106)
Q Consensus        76 i~t~s~d~~i~~wd~~~~~-------------~v~~i~~sp~  104 (106)
                      +++|+.|++|++||++++.             .+.+++|+|.
T Consensus       120 lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~  161 (316)
T 3bg1_A          120 LACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPA  161 (316)
T ss_dssp             EEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCC
T ss_pred             EEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccc
Confidence            9999999999999998652             6788999886

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.49  E-value=2.9e-13  Score=94.17  Aligned_cols=87  Identities=10%  Similarity=0.058  Sum_probs=75.6

Q ss_pred             ecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce------eccCCCcEEEEEecCCcceeeeeeecccEEEEec
Q 036317            7 SDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL------PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGS   80 (106)
Q Consensus         7 ~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~------~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s   80 (106)
                      .+.++...|.+++|+|+++++++++.|+.+++||..+++.      ..+...+..+.|+|++           +++++++
T Consensus        47 ~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----------~~l~~~~  115 (372)
T 1k8k_C           47 ELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNE-----------KKFAVGS  115 (372)
T ss_dssp             EEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTS-----------SEEEEEE
T ss_pred             eecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCC-----------CEEEEEe
Confidence            3456778999999999999999999999999999988864      2355677889999999           9999999


Q ss_pred             CCCcEEEEECCCCC--------------CCcEEEeCCC
Q 036317           81 GDGSVYAWSARSGK--------------EPPVIKWAPG  104 (106)
Q Consensus        81 ~d~~i~~wd~~~~~--------------~v~~i~~sp~  104 (106)
                      .|+.|++||++.++              .|.+++|+|+
T Consensus       116 ~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  153 (372)
T 1k8k_C          116 GSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPN  153 (372)
T ss_dssp             TTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTT
T ss_pred             CCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCC
Confidence            99999999998764              6789999886

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.49  E-value=4.3e-13  Score=93.95  Aligned_cols=71  Identities=18%  Similarity=0.269  Sum_probs=63.0

Q ss_pred             CCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce-----ec-cCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcE
Q 036317           12 VSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL-----PV-SHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSV   85 (106)
Q Consensus        12 ~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~-----~~-~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i   85 (106)
                      ...+.+++|+|||+++++++.|+.|++||..+++.     .. +.+.+..++|+|++           +++++++++ +|
T Consensus       170 ~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g-----------~~l~s~~~~-~v  237 (343)
T 3lrv_A          170 DVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNG-----------YWMVVECDQ-TV  237 (343)
T ss_dssp             SCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTS-----------SEEEEEESS-BE
T ss_pred             CCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCC-----------CEEEEEeCC-eE
Confidence            34799999999999999999999999999998875     33 56778899999999           999999955 99


Q ss_pred             EEEECCCCC
Q 036317           86 YAWSARSGK   94 (106)
Q Consensus        86 ~~wd~~~~~   94 (106)
                      ++||+++++
T Consensus       238 ~iwd~~~~~  246 (343)
T 3lrv_A          238 VCFDLRKDV  246 (343)
T ss_dssp             EEEETTSST
T ss_pred             EEEEcCCCC
Confidence            999999886

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.49  E-value=8.2e-13  Score=90.88  Aligned_cols=86  Identities=17%  Similarity=0.254  Sum_probs=71.7

Q ss_pred             ecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce---eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCC
Q 036317            7 SDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL---PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDG   83 (106)
Q Consensus         7 ~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~---~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~   83 (106)
                      .+.++.+.|++++|+|+|+++++++.|+.+++||..+++.   ......+..+.|+|++           .++ +++.|+
T Consensus       210 ~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~-----------~~~-~~~~d~  277 (340)
T 4aow_A          210 NHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNR-----------YWL-CAATGP  277 (340)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSSCEEEEEECSSS-----------SEE-EEEETT
T ss_pred             EecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCceEEeeecCCCC-----------cee-eccCCC
Confidence            3456778999999999999999999999999999998876   3345567789999988           655 555789


Q ss_pred             cEEEEECCCCC-------------------CCcEEEeCCC
Q 036317           84 SVYAWSARSGK-------------------EPPVIKWAPG  104 (106)
Q Consensus        84 ~i~~wd~~~~~-------------------~v~~i~~sp~  104 (106)
                      .|++||++++.                   .|.+++|+|+
T Consensus       278 ~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d  317 (340)
T 4aow_A          278 SIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSAD  317 (340)
T ss_dssp             EEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTT
T ss_pred             EEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCC
Confidence            99999998753                   6889999986

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.48  E-value=5.8e-13  Score=90.54  Aligned_cols=87  Identities=11%  Similarity=0.090  Sum_probs=74.6

Q ss_pred             eecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecC
Q 036317            6 FSDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSG   81 (106)
Q Consensus         6 ~~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~   81 (106)
                      ..+.+|.+.|++++| |+++++++++.|+.+++||..+++.    ..+...+..+.|+|++           +++++++.
T Consensus        12 ~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~-----------~~l~~~~~   79 (313)
T 3odt_A           12 ATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEK-----------ELLLFGGK   79 (313)
T ss_dssp             EEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTT-----------TEEEEEET
T ss_pred             HHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCC-----------CEEEEecC
Confidence            345788899999999 9999999999999999999988776    4466778899999999           99999999


Q ss_pred             CCcEEEEECCCCC-------------CCcEEEeCCC
Q 036317           82 DGSVYAWSARSGK-------------EPPVIKWAPG  104 (106)
Q Consensus        82 d~~i~~wd~~~~~-------------~v~~i~~sp~  104 (106)
                      |+.+++|++.+..             .+.+++|+++
T Consensus        80 dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  115 (313)
T 3odt_A           80 DTMINGVPLFATSGEDPLYTLIGHQGNVCSLSFQDG  115 (313)
T ss_dssp             TSCEEEEETTCCTTSCC-CEECCCSSCEEEEEEETT
T ss_pred             CCeEEEEEeeecCCCCcccchhhcccCEEEEEecCC
Confidence            9999999998753             5666776543

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.48  E-value=1.3e-12  Score=89.19  Aligned_cols=98  Identities=14%  Similarity=0.198  Sum_probs=69.1

Q ss_pred             eeecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCccee--------------
Q 036317            5 IFSDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVA--------------   66 (106)
Q Consensus         5 ~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~--------------   66 (106)
                      .++..+|...|++++|+|+|+++++++.|+++++||..+++.    ..+...+.  .+++++++++              
T Consensus        60 ~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~--~~~~~~~~l~s~~~~~~~~~~~~~  137 (318)
T 4ggc_A           60 LLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVG--SLSWNSYILSSGSRSGHIHHHDVR  137 (318)
T ss_dssp             EEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEE--EEEEETTEEEEEETTSEEEEEETT
T ss_pred             EEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEE--EeecCCCEEEEEecCCceEeeecC
Confidence            345566677899999999999999999999999999998876    22222221  2222222222              


Q ss_pred             ------------------eeeeecccEEEEecCCCcEEEEECCCCC--------------CCcEEEeCCC
Q 036317           67 ------------------LSVLILRSWVLEGSGDGSVYAWSARSGK--------------EPPVIKWAPG  104 (106)
Q Consensus        67 ------------------~~~~~~~~~i~t~s~d~~i~~wd~~~~~--------------~v~~i~~sp~  104 (106)
                                        +.+....+++++++.|++|++||+++++              .+.++.++|.
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  207 (318)
T 4ggc_A          138 VAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPW  207 (318)
T ss_dssp             SSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTT
T ss_pred             CCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCC
Confidence                              1112222889999999999999999876              5666777664

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.48  E-value=3.1e-13  Score=106.43  Aligned_cols=84  Identities=18%  Similarity=0.181  Sum_probs=74.5

Q ss_pred             CCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce---eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcE
Q 036317            9 GGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL---PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSV   85 (106)
Q Consensus         9 ~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~---~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i   85 (106)
                      .++.+.|++++|+|||+++|+++.|++|+|||..+.+.   ..+...+..+.|+| +           ++|++++.|++|
T Consensus        14 ~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fsp-g-----------~~L~S~s~D~~v   81 (902)
T 2oaj_A           14 YGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVK-G-----------IYLVVINAKDTV   81 (902)
T ss_dssp             EECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECSSCCCEEEEEEET-T-----------TEEEEEETTCEE
T ss_pred             cCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcCCCCCEEEEEEcC-C-----------CEEEEEECcCeE
Confidence            46778999999999999999999999999999887765   23456788999999 9           999999999999


Q ss_pred             EEEECCCCC---------CCcEEEeCCC
Q 036317           86 YAWSARSGK---------EPPVIKWAPG  104 (106)
Q Consensus        86 ~~wd~~~~~---------~v~~i~~sp~  104 (106)
                      ++||+++++         .|.+++|+|+
T Consensus        82 ~lWd~~~~~~~~~~~~~~~V~~v~~sp~  109 (902)
T 2oaj_A           82 YVLSLYSQKVLTTVFVPGKITSIDTDAS  109 (902)
T ss_dssp             EEEETTTCSEEEEEECSSCEEEEECCTT
T ss_pred             EEEECCCCcEEEEEcCCCCEEEEEECCC
Confidence            999999887         6888999886

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.47  E-value=7.7e-13  Score=91.92  Aligned_cols=87  Identities=18%  Similarity=0.289  Sum_probs=76.0

Q ss_pred             ecCCCCCCeeEEEECCC--CCeEEEEeCCCeEEEEEcCCCce------eccCCCcEEEEEecC--CcceeeeeeecccEE
Q 036317            7 SDGGDVSDANEVKLSND--GRLMLLTTLEGHIHVLHSFQGTL------PVSHNSTLEASFSQH--LSLVALSVLILRSWV   76 (106)
Q Consensus         7 ~~~~~~~~v~~v~~spd--g~~l~~~~~~~~i~l~d~~~~~~------~~~~~~~~~~~fs~d--~~~~~~~~~~~~~~i   76 (106)
                      .+.+|.+.|.+++|+|+  ++++++++.|+.|++||..+++.      ..+...+..+.|+|+  +           +++
T Consensus        50 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-----------~~l  118 (379)
T 3jrp_A           50 TLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYG-----------PLL  118 (379)
T ss_dssp             EECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGC-----------SEE
T ss_pred             EecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCC-----------CEE
Confidence            34567789999999987  99999999999999999998863      335667888999999  9           999


Q ss_pred             EEecCCCcEEEEECCCCC------------CCcEEEeCCC
Q 036317           77 LEGSGDGSVYAWSARSGK------------EPPVIKWAPG  104 (106)
Q Consensus        77 ~t~s~d~~i~~wd~~~~~------------~v~~i~~sp~  104 (106)
                      ++++.|+.|++||+++++            .|.+++|+|.
T Consensus       119 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~  158 (379)
T 3jrp_A          119 LVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPA  158 (379)
T ss_dssp             EEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCC
T ss_pred             EEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCc
Confidence            999999999999999873            7889999983

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.47  E-value=1.8e-13  Score=105.55  Aligned_cols=86  Identities=16%  Similarity=0.282  Sum_probs=74.3

Q ss_pred             cCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCc--e----eccCCCcEEEEEecC--CcceeeeeeecccEEEEe
Q 036317            8 DGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGT--L----PVSHNSTLEASFSQH--LSLVALSVLILRSWVLEG   79 (106)
Q Consensus         8 ~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~--~----~~~~~~~~~~~fs~d--~~~~~~~~~~~~~~i~t~   79 (106)
                      +.+|.+.|++++|+|+|+++++++.|+.|++||..++.  .    ..+.+.+..+.|+|+  +           +++++|
T Consensus         5 l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~-----------~~l~s~   73 (753)
T 3jro_A            5 ANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG-----------TILASC   73 (753)
T ss_dssp             ---CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSC-----------SEEEEE
T ss_pred             cccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCC-----------CEEEEE
Confidence            46788999999999999999999999999999987543  2    456678889999988  9           999999


Q ss_pred             cCCCcEEEEECCCCC------------CCcEEEeCCC
Q 036317           80 SGDGSVYAWSARSGK------------EPPVIKWAPG  104 (106)
Q Consensus        80 s~d~~i~~wd~~~~~------------~v~~i~~sp~  104 (106)
                      +.||+|++||+++++            .|.+++|+|+
T Consensus        74 s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~  110 (753)
T 3jro_A           74 SYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPH  110 (753)
T ss_dssp             ETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCG
T ss_pred             eCCCeEEEEECCCCcccccccccCCCCCeEEEEECCC
Confidence            999999999999874            8899999986

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.47  E-value=5.8e-13  Score=94.80  Aligned_cols=86  Identities=15%  Similarity=0.161  Sum_probs=73.8

Q ss_pred             cCCCCCCeeEEEECCCC-CeEEEEeCCCeEEEEEcCCCce---e---ccCCCcEEEEEecCCcceeeeeeecccEEEEec
Q 036317            8 DGGDVSDANEVKLSNDG-RLMLLTTLEGHIHVLHSFQGTL---P---VSHNSTLEASFSQHLSLVALSVLILRSWVLEGS   80 (106)
Q Consensus         8 ~~~~~~~v~~v~~spdg-~~l~~~~~~~~i~l~d~~~~~~---~---~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s   80 (106)
                      +.+|...|.+++|+|++ +++++++.|+.+++||+.+++.   .   .+...+..++|+|++           ++|++++
T Consensus       127 ~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----------~~l~~~~  195 (402)
T 2aq5_A          127 LEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDG-----------ALICTSC  195 (402)
T ss_dssp             EECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTS-----------SCEEEEE
T ss_pred             ecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCC-----------CEEEEEe
Confidence            44667799999999998 6899999999999999998876   2   245567889999999           9999999


Q ss_pred             CCCcEEEEECCCCC------------CCcEEEeCCC
Q 036317           81 GDGSVYAWSARSGK------------EPPVIKWAPG  104 (106)
Q Consensus        81 ~d~~i~~wd~~~~~------------~v~~i~~sp~  104 (106)
                      .|+.|++||+++++            .+.++.|+|+
T Consensus       196 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (402)
T 2aq5_A          196 RDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSE  231 (402)
T ss_dssp             TTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECST
T ss_pred             cCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCC
Confidence            99999999999876            3677888875

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.46  E-value=1e-12  Score=90.84  Aligned_cols=82  Identities=16%  Similarity=0.211  Sum_probs=71.2

Q ss_pred             cCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce---eccCCCcEEEEE--ecCCcceeeeeeecccEEEEecCC
Q 036317            8 DGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL---PVSHNSTLEASF--SQHLSLVALSVLILRSWVLEGSGD   82 (106)
Q Consensus         8 ~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~---~~~~~~~~~~~f--s~d~~~~~~~~~~~~~~i~t~s~d   82 (106)
                      +.+|.+.|.+++|+|+++++++++.|+.+++||..+++.   ..+...+..+.|  +|++           +++++++.|
T Consensus        82 ~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~-----------~~l~~~~~d  150 (368)
T 3mmy_A           82 QQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNY-----------SCVMTGSWD  150 (368)
T ss_dssp             EEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEEEECSSC-----------EEEEEEETT
T ss_pred             eccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCceeeccccCceEEEEEEeCCCC-----------CEEEEccCC
Confidence            345677999999999999999999999999999998887   456677888999  8999           999999999


Q ss_pred             CcEEEEECCCCCCCcEEE
Q 036317           83 GSVYAWSARSGKEPPVIK  100 (106)
Q Consensus        83 ~~i~~wd~~~~~~v~~i~  100 (106)
                      +.|++||+++++.+..+.
T Consensus       151 g~i~vwd~~~~~~~~~~~  168 (368)
T 3mmy_A          151 KTLKFWDTRSSNPMMVLQ  168 (368)
T ss_dssp             SEEEEECSSCSSCSEEEE
T ss_pred             CcEEEEECCCCcEEEEEe
Confidence            999999999988544443

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.46  E-value=3.6e-13  Score=102.66  Aligned_cols=84  Identities=14%  Similarity=0.149  Sum_probs=75.9

Q ss_pred             CCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCc
Q 036317            9 GGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGS   84 (106)
Q Consensus         9 ~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~   84 (106)
                      .++.+.|.+++|+|+|+++++++.++.+++||..+++.    ..+...+..+.|+|++           ++|++++.|++
T Consensus        52 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~-----------~~l~~~~~dg~  120 (814)
T 3mkq_A           52 QVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTK-----------PYVLSGSDDLT  120 (814)
T ss_dssp             ECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSS-----------SEEEEEETTSE
T ss_pred             ecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCC-----------CEEEEEcCCCE
Confidence            45677999999999999999999999999999999876    4466778899999999           99999999999


Q ss_pred             EEEEECCCCC-----------CCcEEEeCC
Q 036317           85 VYAWSARSGK-----------EPPVIKWAP  103 (106)
Q Consensus        85 i~~wd~~~~~-----------~v~~i~~sp  103 (106)
                      |++||++++.           .+.+++|+|
T Consensus       121 i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p  150 (814)
T 3mkq_A          121 VKLWNWENNWALEQTFEGHEHFVMCVAFNP  150 (814)
T ss_dssp             EEEEEGGGTSEEEEEEECCSSCEEEEEEET
T ss_pred             EEEEECCCCceEEEEEcCCCCcEEEEEEEc
Confidence            9999999873           788999998

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.46  E-value=7e-13  Score=95.23  Aligned_cols=78  Identities=13%  Similarity=0.267  Sum_probs=63.7

Q ss_pred             CeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce------eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEE
Q 036317           14 DANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL------PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYA   87 (106)
Q Consensus        14 ~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~------~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~   87 (106)
                      -++.|+||+++ .|++ +.|++|+|||+.+|+.      ..+...+.+++|+|||           ++|++|+.|++|++
T Consensus       107 y~~~l~wS~~n-~lAv-gld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg-----------~~lasgs~Dg~v~i  173 (420)
T 4gga_A          107 YLNLVDWSSGN-VLAV-ALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEG-----------NYLAVGTSSAEVQL  173 (420)
T ss_dssp             TCBCEEECTTS-EEEE-EETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTS-----------SEEEEEETTSCEEE
T ss_pred             cceeEEECCCC-EEEE-EeCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCC-----------CEEEEEECCCeEEE
Confidence            46789999865 4544 5599999999999986      2345578899999999           99999999999999


Q ss_pred             EECCCCC----------CCcEEEeCCC
Q 036317           88 WSARSGK----------EPPVIKWAPG  104 (106)
Q Consensus        88 wd~~~~~----------~v~~i~~sp~  104 (106)
                      ||+++++          .+.++++++.
T Consensus       174 Wd~~~~~~~~~~~~h~~~v~~~s~~~~  200 (420)
T 4gga_A          174 WDVQQQKRLRNMTSHSARVGSLSWNSY  200 (420)
T ss_dssp             EETTTTEEEEEECCCSSCEEEEEEETT
T ss_pred             EEcCCCcEEEEEeCCCCceEEEeeCCC
Confidence            9999987          5666666654

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.45  E-value=1.3e-12  Score=91.59  Aligned_cols=86  Identities=15%  Similarity=0.151  Sum_probs=73.5

Q ss_pred             cCCCCCCeeEEEECC-CCCeEEEEeCCCeEEEEEcCCCce----e-------------ccCCCcEEEEEec-CCcceeee
Q 036317            8 DGGDVSDANEVKLSN-DGRLMLLTTLEGHIHVLHSFQGTL----P-------------VSHNSTLEASFSQ-HLSLVALS   68 (106)
Q Consensus         8 ~~~~~~~v~~v~~sp-dg~~l~~~~~~~~i~l~d~~~~~~----~-------------~~~~~~~~~~fs~-d~~~~~~~   68 (106)
                      +.+|.+.|++++|+| +|+++++++.|+.+++||..+++.    .             .+...+..+.|+| ++      
T Consensus        39 ~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~------  112 (408)
T 4a11_B           39 ERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDT------  112 (408)
T ss_dssp             CCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCT------
T ss_pred             eeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCC------
Confidence            356788999999999 999999999999999999988765    1             2566788899999 77      


Q ss_pred             eeecccEEEEecCCCcEEEEECCCCC---------CCcEEEeCCC
Q 036317           69 VLILRSWVLEGSGDGSVYAWSARSGK---------EPPVIKWAPG  104 (106)
Q Consensus        69 ~~~~~~~i~t~s~d~~i~~wd~~~~~---------~v~~i~~sp~  104 (106)
                           +++++++.|+.|++||+++++         .+.++.|+|.
T Consensus       113 -----~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  152 (408)
T 4a11_B          113 -----GMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPV  152 (408)
T ss_dssp             -----TCEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSS
T ss_pred             -----cEEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecC
Confidence                 899999999999999999887         5667777664

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.44  E-value=1.1e-12  Score=92.95  Aligned_cols=80  Identities=20%  Similarity=0.147  Sum_probs=70.3

Q ss_pred             CeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEEE
Q 036317           14 DANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWS   89 (106)
Q Consensus        14 ~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd   89 (106)
                      .+....|+|+|+++++++.++.+++||..+++.    ..+...+..++|+|++           ++|++++.|++|++||
T Consensus        99 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-----------~~l~s~s~d~~i~iwd  167 (420)
T 3vl1_A           99 YTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSG-----------EALISSSQDMQLKIWS  167 (420)
T ss_dssp             EEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTS-----------SEEEEEETTSEEEEEE
T ss_pred             ceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCC-----------CEEEEEeCCCeEEEEe
Confidence            344557899999999999999999999988876    3466778899999999           9999999999999999


Q ss_pred             CCCCC----------CCcEEEeCCC
Q 036317           90 ARSGK----------EPPVIKWAPG  104 (106)
Q Consensus        90 ~~~~~----------~v~~i~~sp~  104 (106)
                      +++++          .|.+++|+|+
T Consensus       168 ~~~~~~~~~~~~h~~~v~~~~~~~~  192 (420)
T 3vl1_A          168 VKDGSNPRTLIGHRATVTDIAIIDR  192 (420)
T ss_dssp             TTTCCCCEEEECCSSCEEEEEEETT
T ss_pred             CCCCcCceEEcCCCCcEEEEEEcCC
Confidence            99887          7888999886

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.44  E-value=2e-12  Score=102.84  Aligned_cols=89  Identities=12%  Similarity=0.187  Sum_probs=77.9

Q ss_pred             eecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEec--CCcceeeeeeecccEEEEe
Q 036317            6 FSDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQ--HLSLVALSVLILRSWVLEG   79 (106)
Q Consensus         6 ~~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~--d~~~~~~~~~~~~~~i~t~   79 (106)
                      ..+.+|.+.|.+++|+|||+++++++.|+++++||..+++.    ..+...+..+.|+|  ++           .++++|
T Consensus       651 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-----------~~l~sg  719 (1249)
T 3sfz_A          651 LDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNH-----------LLLATG  719 (1249)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSC-----------CEEEEE
T ss_pred             EEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCc-----------eEEEEE
Confidence            34556778999999999999999999999999999999887    45667788899999  45           689999


Q ss_pred             cCCCcEEEEECCCCC----------CCcEEEeCCCC
Q 036317           80 SGDGSVYAWSARSGK----------EPPVIKWAPGS  105 (106)
Q Consensus        80 s~d~~i~~wd~~~~~----------~v~~i~~sp~~  105 (106)
                      +.|+.|++||+++++          .|.+++|+|+.
T Consensus       720 ~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~  755 (1249)
T 3sfz_A          720 SNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDD  755 (1249)
T ss_dssp             ETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSST
T ss_pred             eCCCeEEEEECCCcchhheecCCCCCEEEEEEecCC
Confidence            999999999999887          78899999863

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.44  E-value=2.2e-12  Score=89.25  Aligned_cols=75  Identities=20%  Similarity=0.213  Sum_probs=66.3

Q ss_pred             cCCCCCCeeEEEECC-CCCeEEEEeCCCeEEEEEcCCCce---e----ccCCCcEEEEEecCCcceeeeeeecccEEEEe
Q 036317            8 DGGDVSDANEVKLSN-DGRLMLLTTLEGHIHVLHSFQGTL---P----VSHNSTLEASFSQHLSLVALSVLILRSWVLEG   79 (106)
Q Consensus         8 ~~~~~~~v~~v~~sp-dg~~l~~~~~~~~i~l~d~~~~~~---~----~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~   79 (106)
                      +.++...|.+++|+| +++++++++.|+.|++||..+++.   .    .+...+..+.|+|++           ++++++
T Consensus       111 ~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----------~~l~~~  179 (366)
T 3k26_A          111 YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLG-----------EKIMSC  179 (366)
T ss_dssp             EESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTS-----------SEEEEE
T ss_pred             ecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCC-----------CEEEEe
Confidence            445677999999999 999999999999999999998876   1    355677889999999           999999


Q ss_pred             cCCCcEEEEECCCC
Q 036317           80 SGDGSVYAWSARSG   93 (106)
Q Consensus        80 s~d~~i~~wd~~~~   93 (106)
                      +.|+.|++||++++
T Consensus       180 ~~dg~i~i~d~~~~  193 (366)
T 3k26_A          180 GMDHSLKLWRINSK  193 (366)
T ss_dssp             ETTSCEEEEESCSH
T ss_pred             cCCCCEEEEECCCC
Confidence            99999999999965

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.44  E-value=3.4e-12  Score=91.63  Aligned_cols=98  Identities=12%  Similarity=0.159  Sum_probs=71.0

Q ss_pred             eeecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceee-------------
Q 036317            5 IFSDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVAL-------------   67 (106)
Q Consensus         5 ~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~-------------   67 (106)
                      .+++.++...|++|+|+|||+++++++.|++|++||+.+++.    ..+...+..+  ++++++++.             
T Consensus       140 ~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~--s~~~~~l~sgs~d~~i~~~d~~  217 (420)
T 4gga_A          140 LLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSL--SWNSYILSSGSRSGHIHHHDVR  217 (420)
T ss_dssp             EEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEE--EEETTEEEEEETTSEEEEEETT
T ss_pred             EEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEE--eeCCCEEEEEeCCCceeEeeec
Confidence            345566677899999999999999999999999999988875    2233333222  222333331             


Q ss_pred             -------------------eeeecccEEEEecCCCcEEEEECCCCC--------------CCcEEEeCCC
Q 036317           68 -------------------SVLILRSWVLEGSGDGSVYAWSARSGK--------------EPPVIKWAPG  104 (106)
Q Consensus        68 -------------------~~~~~~~~i~t~s~d~~i~~wd~~~~~--------------~v~~i~~sp~  104 (106)
                                         .+....+++++++.|+.+++|+..+++              .|.+++|+|.
T Consensus       218 ~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~  287 (420)
T 4gga_A          218 VAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPW  287 (420)
T ss_dssp             SSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTT
T ss_pred             ccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCC
Confidence                               112222889999999999999998775              6788888885

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.43  E-value=3.7e-12  Score=88.02  Aligned_cols=80  Identities=15%  Similarity=0.186  Sum_probs=71.4

Q ss_pred             CeeEEEECCCCCeEEEEeCCCeEEEEEcCC-Cce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEE
Q 036317           14 DANEVKLSNDGRLMLLTTLEGHIHVLHSFQ-GTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAW   88 (106)
Q Consensus        14 ~v~~v~~spdg~~l~~~~~~~~i~l~d~~~-~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~w   88 (106)
                      .+.+++|+|+++++++++.++.+++||..+ ++.    ..+...+..+.|+|++           +++++++.|+.|++|
T Consensus       177 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~-----------~~l~~~~~d~~i~v~  245 (369)
T 3zwl_B          177 AATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDL-----------TYFITSSRDTNSFLV  245 (369)
T ss_dssp             CEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTS-----------SEEEEEETTSEEEEE
T ss_pred             ceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCC-----------CEEEEecCCceEEEE
Confidence            899999999999999999999999999988 444    4466678889999999           999999999999999


Q ss_pred             ECCCCC---------CCcEEEeCCC
Q 036317           89 SARSGK---------EPPVIKWAPG  104 (106)
Q Consensus        89 d~~~~~---------~v~~i~~sp~  104 (106)
                      |+++++         .+.++.|+|.
T Consensus       246 d~~~~~~~~~~~~~~~~~~~~~~~~  270 (369)
T 3zwl_B          246 DVSTLQVLKKYETDCPLNTAVITPL  270 (369)
T ss_dssp             ETTTCCEEEEEECSSCEEEEEECSS
T ss_pred             ECCCCceeeeecCCCCceeEEecCC
Confidence            999987         6778888875

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.43  E-value=6.1e-13  Score=99.67  Aligned_cols=86  Identities=12%  Similarity=0.046  Sum_probs=72.3

Q ss_pred             cCCCCCCeeEE--EECCCC-CeEEEEeCCCeEEEEEcCCCce----eccC--CCcEEEEEecCCcceeeeeeecccEEEE
Q 036317            8 DGGDVSDANEV--KLSNDG-RLMLLTTLEGHIHVLHSFQGTL----PVSH--NSTLEASFSQHLSLVALSVLILRSWVLE   78 (106)
Q Consensus         8 ~~~~~~~v~~v--~~spdg-~~l~~~~~~~~i~l~d~~~~~~----~~~~--~~~~~~~fs~d~~~~~~~~~~~~~~i~t   78 (106)
                      +.+|.+.|.++  .|+|+| +++++++.|++++|||+.+++.    ..+.  ..+..++|+|++           +.+++
T Consensus       304 ~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~-----------~~l~s  372 (524)
T 2j04_B          304 DQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQI-----------YSYIY  372 (524)
T ss_dssp             EECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTT-----------TEEEE
T ss_pred             eecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCc-----------CeEEE
Confidence            45667799999  678998 8899999999999999987764    2222  235679999999           99999


Q ss_pred             ecCCCcEEEEECCCCC----------CCcEEEeCCC
Q 036317           79 GSGDGSVYAWSARSGK----------EPPVIKWAPG  104 (106)
Q Consensus        79 ~s~d~~i~~wd~~~~~----------~v~~i~~sp~  104 (106)
                      ++.|++|++||+++++          .|.+++|+|+
T Consensus       373 ~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~  408 (524)
T 2j04_B          373 SDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRL  408 (524)
T ss_dssp             ECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSS
T ss_pred             eCCCCcEEEEECcccccceeeecCCCceEEEEeCCC
Confidence            9999999999999876          7899999996

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.43  E-value=2.4e-12  Score=87.45  Aligned_cols=81  Identities=12%  Similarity=0.211  Sum_probs=72.1

Q ss_pred             CCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEE
Q 036317           11 DVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVY   86 (106)
Q Consensus        11 ~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~   86 (106)
                      +...+.+++|+|+++ +++++.++.+++||..+++.    ..+...+..+.|+|++           + +++++.|+.|+
T Consensus       183 ~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-----------~-l~~~~~dg~v~  249 (313)
T 3odt_A          183 HNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-----------D-IVSCGEDRTVR  249 (313)
T ss_dssp             CSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-----------C-EEEEETTSEEE
T ss_pred             CcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-----------C-EEEEecCCEEE
Confidence            566899999999999 99999999999999998877    4466778899999999           7 77889999999


Q ss_pred             EEECCCCC----------CCcEEEeCCC
Q 036317           87 AWSARSGK----------EPPVIKWAPG  104 (106)
Q Consensus        87 ~wd~~~~~----------~v~~i~~sp~  104 (106)
                      +||+++++          .+.+++|+|+
T Consensus       250 iwd~~~~~~~~~~~~~~~~i~~~~~~~~  277 (313)
T 3odt_A          250 IWSKENGSLKQVITLPAISIWSVDCMSN  277 (313)
T ss_dssp             EECTTTCCEEEEEECSSSCEEEEEECTT
T ss_pred             EEECCCCceeEEEeccCceEEEEEEccC
Confidence            99999987          7888999886

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.43  E-value=1.3e-12  Score=91.96  Aligned_cols=72  Identities=19%  Similarity=0.299  Sum_probs=65.0

Q ss_pred             CCCeeEEEECCCCCeEEEEeCC---CeEEEEEcCCCce----ec-------------cCCCcEEEEEecCCcceeeeeee
Q 036317           12 VSDANEVKLSNDGRLMLLTTLE---GHIHVLHSFQGTL----PV-------------SHNSTLEASFSQHLSLVALSVLI   71 (106)
Q Consensus        12 ~~~v~~v~~spdg~~l~~~~~~---~~i~l~d~~~~~~----~~-------------~~~~~~~~~fs~d~~~~~~~~~~   71 (106)
                      ...|.+++|+|+++++++++.+   +.+++||..+++.    ..             +...+..+.|+|++         
T Consensus       233 ~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---------  303 (397)
T 1sq9_A          233 SNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSG---------  303 (397)
T ss_dssp             CCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSS---------
T ss_pred             CCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCC---------
Confidence            6799999999999999999999   9999999998876    33             56678889999999         


Q ss_pred             cccEEEEecCCCcEEEEECCCCC
Q 036317           72 LRSWVLEGSGDGSVYAWSARSGK   94 (106)
Q Consensus        72 ~~~~i~t~s~d~~i~~wd~~~~~   94 (106)
                        ++|++++.|+.|++||+++++
T Consensus       304 --~~l~~~~~dg~i~iwd~~~~~  324 (397)
T 1sq9_A          304 --ETLCSAGWDGKLRFWDVKTKE  324 (397)
T ss_dssp             --SEEEEEETTSEEEEEETTTTE
T ss_pred             --CEEEEEeCCCeEEEEEcCCCc
Confidence              999999999999999998765

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.43  E-value=1.1e-12  Score=92.19  Aligned_cols=72  Identities=13%  Similarity=0.276  Sum_probs=63.4

Q ss_pred             CCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEE
Q 036317           11 DVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVY   86 (106)
Q Consensus        11 ~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~   86 (106)
                      +.+.|.+++|+|+|+++++++.++.+++|| .+++.    ..+...+..+.|+|++           +++++++.|+.|+
T Consensus       107 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~-----------~~l~~~~~d~~i~  174 (425)
T 1r5m_A          107 TTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDG-----------THIISMDVENVTI  174 (425)
T ss_dssp             -CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTS-----------SEEEEEETTCCEE
T ss_pred             CCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCC-----------CEEEEEecCCeEE
Confidence            455999999999999999999999999999 45554    4466678899999999           9999999999999


Q ss_pred             EEECCCCC
Q 036317           87 AWSARSGK   94 (106)
Q Consensus        87 ~wd~~~~~   94 (106)
                      +||+++++
T Consensus       175 iwd~~~~~  182 (425)
T 1r5m_A          175 LWNVISGT  182 (425)
T ss_dssp             EEETTTTE
T ss_pred             EEECCCCc
Confidence            99999887

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.42  E-value=1.6e-12  Score=91.43  Aligned_cols=82  Identities=11%  Similarity=0.248  Sum_probs=66.8

Q ss_pred             CCCCeeEEEECCCCC-eEEEEeCCCeEEEEEc----CCCc------e----ec----------cCCCcEEEEEecCCcce
Q 036317           11 DVSDANEVKLSNDGR-LMLLTTLEGHIHVLHS----FQGT------L----PV----------SHNSTLEASFSQHLSLV   65 (106)
Q Consensus        11 ~~~~v~~v~~spdg~-~l~~~~~~~~i~l~d~----~~~~------~----~~----------~~~~~~~~~fs~d~~~~   65 (106)
                      +.+.|.+++|+|+|+ ++++++.|+.+++||.    .+++      .    ..          +.+.+..+.|+|++   
T Consensus        44 ~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~---  120 (425)
T 1r5m_A           44 KLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDG---  120 (425)
T ss_dssp             ECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTS---
T ss_pred             ccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCC---
Confidence            346899999999999 9999999999999999    8877      2    11          23477889999999   


Q ss_pred             eeeeeecccEEEEecCCCcEEEEECCCCC----------CCcEEEeCCC
Q 036317           66 ALSVLILRSWVLEGSGDGSVYAWSARSGK----------EPPVIKWAPG  104 (106)
Q Consensus        66 ~~~~~~~~~~i~t~s~d~~i~~wd~~~~~----------~v~~i~~sp~  104 (106)
                              ++|++++.|+.|++|| .+++          .|.+++|+|+
T Consensus       121 --------~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~  160 (425)
T 1r5m_A          121 --------NSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKD  160 (425)
T ss_dssp             --------SEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTT
T ss_pred             --------CEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCC
Confidence                    9999999999999999 4444          7899999986

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.42  E-value=2.4e-12  Score=91.80  Aligned_cols=88  Identities=14%  Similarity=0.247  Sum_probs=73.7

Q ss_pred             cCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEec--C
Q 036317            8 DGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGS--G   81 (106)
Q Consensus         8 ~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s--~   81 (106)
                      +.++.+.|.+++|+|+++++++++.|+.+++||..+++.    ..+...+..++|+|++          ...+++++  .
T Consensus       213 ~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~----------~~ll~~~~gs~  282 (401)
T 4aez_A          213 LQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQ----------SNLLATGGGTM  282 (401)
T ss_dssp             EECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTS----------TTEEEEECCTT
T ss_pred             EcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCC----------CCEEEEecCCC
Confidence            345677999999999999999999999999999998776    3456677889999987          24556654  7


Q ss_pred             CCcEEEEECCCCC---------CCcEEEeCCCC
Q 036317           82 DGSVYAWSARSGK---------EPPVIKWAPGS  105 (106)
Q Consensus        82 d~~i~~wd~~~~~---------~v~~i~~sp~~  105 (106)
                      |+.|++||+++++         .+.+++|+|+.
T Consensus       283 d~~i~i~d~~~~~~~~~~~~~~~v~~~~~s~~~  315 (401)
T 4aez_A          283 DKQIHFWNAATGARVNTVDAGSQVTSLIWSPHS  315 (401)
T ss_dssp             TCEEEEEETTTCCEEEEEECSSCEEEEEECSSS
T ss_pred             CCEEEEEECCCCCEEEEEeCCCcEEEEEECCCC
Confidence            9999999999987         78899998863

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.42  E-value=1.5e-12  Score=91.99  Aligned_cols=82  Identities=15%  Similarity=0.143  Sum_probs=71.6

Q ss_pred             CCCeeEEEECCCC-CeEEEEeCCC---eEEEEEcCCCc-e----e-ccCCCcEEEEEec-CCcceeeeeeecccEEEEec
Q 036317           12 VSDANEVKLSNDG-RLMLLTTLEG---HIHVLHSFQGT-L----P-VSHNSTLEASFSQ-HLSLVALSVLILRSWVLEGS   80 (106)
Q Consensus        12 ~~~v~~v~~spdg-~~l~~~~~~~---~i~l~d~~~~~-~----~-~~~~~~~~~~fs~-d~~~~~~~~~~~~~~i~t~s   80 (106)
                      ...|.+++|+|++ .++++++.++   .+++||..++. .    . .+...+..++|+| ++           +++++++
T Consensus       214 ~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-----------~~l~s~~  282 (416)
T 2pm9_A          214 KQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDE-----------HLLLSSG  282 (416)
T ss_dssp             CCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCS-----------SCEEEEE
T ss_pred             CCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCC-----------CeEEEEe
Confidence            5689999999997 5788888888   99999998863 2    3 4666788999999 89           9999999


Q ss_pred             CCCcEEEEECCCCC----------CCcEEEeCCC
Q 036317           81 GDGSVYAWSARSGK----------EPPVIKWAPG  104 (106)
Q Consensus        81 ~d~~i~~wd~~~~~----------~v~~i~~sp~  104 (106)
                      .|+.|++||+++++          .|.+++|+|+
T Consensus       283 ~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~  316 (416)
T 2pm9_A          283 RDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPE  316 (416)
T ss_dssp             SSSEEEEECSSSCCEEEEEECSSSCCCCEEECTT
T ss_pred             CCCCEEEeeCCCCccceeecCCCCceEEEEECCC
Confidence            99999999999887          7889999985

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.41  E-value=2.7e-13  Score=97.09  Aligned_cols=79  Identities=9%  Similarity=0.126  Sum_probs=64.9

Q ss_pred             eeEEEECCCCCeEEEEeCCCeEEEEEcCCCce---------eccCCCcEEEEEec--------CCcceeeeeeecccEEE
Q 036317           15 ANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL---------PVSHNSTLEASFSQ--------HLSLVALSVLILRSWVL   77 (106)
Q Consensus        15 v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~---------~~~~~~~~~~~fs~--------d~~~~~~~~~~~~~~i~   77 (106)
                      .....++++++++++++.|++++|||..+++.         .+|.+.+.+++|+|        |+           ++|+
T Consensus        92 ~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~-----------~~la  160 (393)
T 4gq1_A           92 GNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAE-----------QVIA  160 (393)
T ss_dssp             -----CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEE-----------EEEE
T ss_pred             cceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCC-----------CEEE
Confidence            33445566778899999999999999988754         35778889999998        88           9999


Q ss_pred             EecCCCcEEEEECCCCC----------CCcEEEeCCC
Q 036317           78 EGSGDGSVYAWSARSGK----------EPPVIKWAPG  104 (106)
Q Consensus        78 t~s~d~~i~~wd~~~~~----------~v~~i~~sp~  104 (106)
                      +++.|++|+|||++++.          .+.+++|+|.
T Consensus       161 s~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~  197 (393)
T 4gq1_A          161 SVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPS  197 (393)
T ss_dssp             EEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETT
T ss_pred             EEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCC
Confidence            99999999999998765          8889999985

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.41  E-value=3.1e-13  Score=98.71  Aligned_cols=81  Identities=14%  Similarity=0.112  Sum_probs=68.8

Q ss_pred             CCeeEEEECCCCCeEE----EEeCCCeEEEEEcCCC--------c----e---eccCCCcEEEEEecC-Ccceeeeeeec
Q 036317           13 SDANEVKLSNDGRLML----LTTLEGHIHVLHSFQG--------T----L---PVSHNSTLEASFSQH-LSLVALSVLIL   72 (106)
Q Consensus        13 ~~v~~v~~spdg~~l~----~~~~~~~i~l~d~~~~--------~----~---~~~~~~~~~~~fs~d-~~~~~~~~~~~   72 (106)
                      +.|.+++|+|+|++++    +++.|+.+++||+.++        +    .   ..|...+..++|+|+ +          
T Consensus        93 ~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~----------  162 (434)
T 2oit_A           93 FPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVP----------  162 (434)
T ss_dssp             SCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCT----------
T ss_pred             CcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCC----------
Confidence            4699999999999999    6778999999998654        1    1   234567889999998 7          


Q ss_pred             ccEEEEecCCCcEEEEECCCCC----------CCcEEEeCCC
Q 036317           73 RSWVLEGSGDGSVYAWSARSGK----------EPPVIKWAPG  104 (106)
Q Consensus        73 ~~~i~t~s~d~~i~~wd~~~~~----------~v~~i~~sp~  104 (106)
                       ..+++++.|++|++||+++++          .+.+++|+|+
T Consensus       163 -~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspd  203 (434)
T 2oit_A          163 -SMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPK  203 (434)
T ss_dssp             -TEEEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTT
T ss_pred             -CEEEEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCC
Confidence             899999999999999999874          7899999986

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.41  E-value=2.4e-12  Score=90.85  Aligned_cols=88  Identities=15%  Similarity=0.235  Sum_probs=75.0

Q ss_pred             eecCCCCCCeeEEEECCC-CCeEEEEeCCCeEEEEEcCCCc------e-------eccCCCcEEEEEecC-Ccceeeeee
Q 036317            6 FSDGGDVSDANEVKLSND-GRLMLLTTLEGHIHVLHSFQGT------L-------PVSHNSTLEASFSQH-LSLVALSVL   70 (106)
Q Consensus         6 ~~~~~~~~~v~~v~~spd-g~~l~~~~~~~~i~l~d~~~~~------~-------~~~~~~~~~~~fs~d-~~~~~~~~~   70 (106)
                      ..+.+|.+.|.+++|+|+ ++++++++.|+.|++||..+++      .       ..+...+..+.|+|+ +        
T Consensus       107 ~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--------  178 (416)
T 2pm9_A          107 ARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLA--------  178 (416)
T ss_dssp             EECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCT--------
T ss_pred             hhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCC--------
Confidence            445567789999999998 8999999999999999998876      2       235567788999999 7        


Q ss_pred             ecccEEEEecCCCcEEEEECCCCC----------------CCcEEEeCCC
Q 036317           71 ILRSWVLEGSGDGSVYAWSARSGK----------------EPPVIKWAPG  104 (106)
Q Consensus        71 ~~~~~i~t~s~d~~i~~wd~~~~~----------------~v~~i~~sp~  104 (106)
                         .++++++.|+.|++||+++++                .+.+++|+|+
T Consensus       179 ---~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  225 (416)
T 2pm9_A          179 ---HVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPK  225 (416)
T ss_dssp             ---TEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSS
T ss_pred             ---cEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCC
Confidence               899999999999999999865                4788899886

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.41  E-value=5.1e-12  Score=89.02  Aligned_cols=78  Identities=8%  Similarity=0.101  Sum_probs=67.4

Q ss_pred             ecCCCCCCeeEEEECCCCC-eEEEEeCCCeEEEEEcCC----Cce---eccCCCcEEEEEec-CCcceeeeeeecccEEE
Q 036317            7 SDGGDVSDANEVKLSNDGR-LMLLTTLEGHIHVLHSFQ----GTL---PVSHNSTLEASFSQ-HLSLVALSVLILRSWVL   77 (106)
Q Consensus         7 ~~~~~~~~v~~v~~spdg~-~l~~~~~~~~i~l~d~~~----~~~---~~~~~~~~~~~fs~-d~~~~~~~~~~~~~~i~   77 (106)
                      .+.++.+.|.+++|+|+++ ++++++.|+.+++||..+    +..   ..+...+..+.|+| ++           ++|+
T Consensus       199 ~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-----------~~l~  267 (383)
T 3ei3_B          199 KEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDS-----------TKLL  267 (383)
T ss_dssp             EEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTS-----------CEEE
T ss_pred             EeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCC-----------CEEE
Confidence            3445678999999999999 899999999999999987    333   34666788999999 99           9999


Q ss_pred             EecCCCcEEEEECCCCCC
Q 036317           78 EGSGDGSVYAWSARSGKE   95 (106)
Q Consensus        78 t~s~d~~i~~wd~~~~~~   95 (106)
                      +++.|+.|++||+++++.
T Consensus       268 ~~~~d~~i~iwd~~~~~~  285 (383)
T 3ei3_B          268 TTDQRNEIRVYSSYDWSK  285 (383)
T ss_dssp             EEESSSEEEEEETTBTTS
T ss_pred             EEcCCCcEEEEECCCCcc
Confidence            999999999999998873

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.40  E-value=9.6e-13  Score=94.18  Aligned_cols=72  Identities=10%  Similarity=0.157  Sum_probs=63.7

Q ss_pred             CCCCCCeeEEEECC-CCCeEEEEeCCCeEEEEEcCC---Cce------eccCCCcEEEEEecCCcceeeeeeecccEEEE
Q 036317            9 GGDVSDANEVKLSN-DGRLMLLTTLEGHIHVLHSFQ---GTL------PVSHNSTLEASFSQHLSLVALSVLILRSWVLE   78 (106)
Q Consensus         9 ~~~~~~v~~v~~sp-dg~~l~~~~~~~~i~l~d~~~---~~~------~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t   78 (106)
                      .+|.+.|++++|+| +|+++++++.|+.|++||..+   +..      ..+...+.+++|+|++           +++++
T Consensus        60 ~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-----------~~l~s  128 (437)
T 3gre_A           60 ENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNF-----------DAFAV  128 (437)
T ss_dssp             TTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTS-----------SEEEE
T ss_pred             cCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCC-----------CEEEE
Confidence            56778999999999 999999999999999999876   432      2466778899999999           99999


Q ss_pred             ecCCCcEEEEECC
Q 036317           79 GSGDGSVYAWSAR   91 (106)
Q Consensus        79 ~s~d~~i~~wd~~   91 (106)
                      ++.|++|++||++
T Consensus       129 ~s~dg~i~vwd~~  141 (437)
T 3gre_A          129 SSKDGQIIVLKVN  141 (437)
T ss_dssp             EETTSEEEEEEEE
T ss_pred             EeCCCEEEEEEec
Confidence            9999999999995

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.39  E-value=1.2e-12  Score=95.68  Aligned_cols=72  Identities=14%  Similarity=0.128  Sum_probs=63.3

Q ss_pred             CCCCCCeeEEEECCC-CCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCC
Q 036317            9 GGDVSDANEVKLSND-GRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDG   83 (106)
Q Consensus         9 ~~~~~~v~~v~~spd-g~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~   83 (106)
                      .+|.+.|.+++|+|+ ++++++++.|+++++||+.++..    ..+...+.+++|+|+|           ++|++|+.|+
T Consensus       146 ~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg-----------~~lasgs~dg  214 (434)
T 2oit_A          146 KDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKG-----------KQLAVGKQNG  214 (434)
T ss_dssp             CSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTS-----------SCEEEEETTS
T ss_pred             CCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCC-----------CEEEEEcCCC
Confidence            345679999999998 88899999999999999988755    2345578889999999           9999999999


Q ss_pred             cEEEEECC
Q 036317           84 SVYAWSAR   91 (106)
Q Consensus        84 ~i~~wd~~   91 (106)
                      +|++||++
T Consensus       215 ~v~iwd~~  222 (434)
T 2oit_A          215 TVVQYLPT  222 (434)
T ss_dssp             CEEEECTT
T ss_pred             cEEEEccC
Confidence            99999998

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.39  E-value=3.7e-12  Score=100.33  Aligned_cols=82  Identities=18%  Similarity=0.373  Sum_probs=72.2

Q ss_pred             CCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce---eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEE
Q 036317           11 DVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL---PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYA   87 (106)
Q Consensus        11 ~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~---~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~   87 (106)
                      +...|.+++|+| |+++++++.|++|++||+.+++.   ..+.+.+..++|+|++           +++++|+.||+|++
T Consensus        57 ~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~~~~~V~~v~~sp~g-----------~~l~sgs~dg~V~l  124 (902)
T 2oaj_A           57 DRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVFVPGKITSIDTDASL-----------DWMLIGLQNGSMIV  124 (902)
T ss_dssp             SCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEECSSCEEEEECCTTC-----------SEEEEEETTSCEEE
T ss_pred             CCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEcCCCCEEEEEECCCC-----------CEEEEEcCCCcEEE
Confidence            456899999999 88999999999999999998876   3355678899999999           99999999999999


Q ss_pred             EECCCCC---------------------CCcEEEeCCC
Q 036317           88 WSARSGK---------------------EPPVIKWAPG  104 (106)
Q Consensus        88 wd~~~~~---------------------~v~~i~~sp~  104 (106)
                      ||+++++                     .|.+++|+|+
T Consensus       125 wd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~  162 (902)
T 2oaj_A          125 YDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPR  162 (902)
T ss_dssp             EETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETT
T ss_pred             EECCCCccccceeccccccccccccCCCCeEEEEEccC
Confidence            9997643                     6889999985

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.39  E-value=3.9e-12  Score=89.41  Aligned_cols=83  Identities=10%  Similarity=0.057  Sum_probs=65.3

Q ss_pred             CCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----e------cc---------------CCCcEEEEEecCCcce
Q 036317           11 DVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----P------VS---------------HNSTLEASFSQHLSLV   65 (106)
Q Consensus        11 ~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~------~~---------------~~~~~~~~fs~d~~~~   65 (106)
                      +...|.+++|+|+|+++++++.|+.+++||+.+++.    .      .+               ...+..++|+|+++++
T Consensus       290 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~  369 (397)
T 1sq9_A          290 HSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRS  369 (397)
T ss_dssp             BSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSB
T ss_pred             cCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccc
Confidence            667999999999999999999999999999998876    3      34               5677889999998222


Q ss_pred             eeeeeecccEEEEecCCCcEEEEECCCCC
Q 036317           66 ALSVLILRSWVLEGSGDGSVYAWSARSGK   94 (106)
Q Consensus        66 ~~~~~~~~~~i~t~s~d~~i~~wd~~~~~   94 (106)
                      +..-.. .++|++++.|+.|++||+++|+
T Consensus       370 ~~~~~~-~~~l~s~~~dg~i~iw~~~~g~  397 (397)
T 1sq9_A          370 GMGADL-NESLCCVCLDRSIRWFREAGGK  397 (397)
T ss_dssp             STTCTT-SCEEEEEETTTEEEEEEEEC--
T ss_pred             cccccc-cceEEEecCCCcEEEEEcCCCC
Confidence            211100 0389999999999999999875

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.38  E-value=4.1e-12  Score=90.55  Aligned_cols=69  Identities=19%  Similarity=0.241  Sum_probs=57.6

Q ss_pred             CeeEEEECCCCCeEEEEeCCCeEEEEEcCC-Cce----eccCC---------------CcEEEEEecCCcceeeeeeecc
Q 036317           14 DANEVKLSNDGRLMLLTTLEGHIHVLHSFQ-GTL----PVSHN---------------STLEASFSQHLSLVALSVLILR   73 (106)
Q Consensus        14 ~v~~v~~spdg~~l~~~~~~~~i~l~d~~~-~~~----~~~~~---------------~~~~~~fs~d~~~~~~~~~~~~   73 (106)
                      .|.+++|+|+|+++++++. +.+++||..+ ++.    ..+..               ....++|+|++           
T Consensus       287 ~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~-----------  354 (447)
T 3dw8_B          287 SISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSD-----------  354 (447)
T ss_dssp             CEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTS-----------
T ss_pred             eEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCC-----------
Confidence            8999999999999999998 9999999986 554    22211               02238999999           


Q ss_pred             cEEEEecCCCcEEEEECCCCC
Q 036317           74 SWVLEGSGDGSVYAWSARSGK   94 (106)
Q Consensus        74 ~~i~t~s~d~~i~~wd~~~~~   94 (106)
                      ++|++|+.|+.|++||+++++
T Consensus       355 ~~l~s~s~dg~v~iwd~~~~~  375 (447)
T 3dw8_B          355 SVVMTGSYNNFFRMFDRNTKR  375 (447)
T ss_dssp             SEEEEECSTTEEEEEETTTCC
T ss_pred             CEEEEeccCCEEEEEEcCCCc
Confidence            999999999999999998775

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.37  E-value=3.9e-12  Score=87.86  Aligned_cols=83  Identities=13%  Similarity=0.132  Sum_probs=68.5

Q ss_pred             CCCCCCeeEEEECCCCCeEEEEe-C---CCeEEEEEcCCCce-----eccCCCcEEEEEecC---CcceeeeeeecccEE
Q 036317            9 GGDVSDANEVKLSNDGRLMLLTT-L---EGHIHVLHSFQGTL-----PVSHNSTLEASFSQH---LSLVALSVLILRSWV   76 (106)
Q Consensus         9 ~~~~~~v~~v~~spdg~~l~~~~-~---~~~i~l~d~~~~~~-----~~~~~~~~~~~fs~d---~~~~~~~~~~~~~~i   76 (106)
                      .+|...|.+++|+|+++.+++++ .   |+.+++||..+++.     ..+...+..++|+|+   +           +++
T Consensus        15 ~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-----------~~l   83 (357)
T 3i2n_A           15 KGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQ-----------RYL   83 (357)
T ss_dssp             EECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTT-----------CCE
T ss_pred             cCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCC-----------ceE
Confidence            46778999999999997676544 4   89999999998876     246667889999998   8           999


Q ss_pred             EEecCCCcEEEEECCCCC-----------CCcEEEeC
Q 036317           77 LEGSGDGSVYAWSARSGK-----------EPPVIKWA  102 (106)
Q Consensus        77 ~t~s~d~~i~~wd~~~~~-----------~v~~i~~s  102 (106)
                      ++++.|+.|++||+++++           .|.+++|.
T Consensus        84 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~  120 (357)
T 3i2n_A           84 ATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGI  120 (357)
T ss_dssp             EEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEE
T ss_pred             EEecCCCeEEEEeCCCCCccEEEEEecccceEEEeec
Confidence            999999999999999775           66777553

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.37  E-value=6.9e-12  Score=89.70  Aligned_cols=83  Identities=10%  Similarity=0.092  Sum_probs=70.3

Q ss_pred             CCCeeEEE--ECCCCCeEEEEeCCCeEEEEEcCCCce----ec--cCCCcEEEEEecCCcceeeeeeecccEEEEecCCC
Q 036317           12 VSDANEVK--LSNDGRLMLLTTLEGHIHVLHSFQGTL----PV--SHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDG   83 (106)
Q Consensus        12 ~~~v~~v~--~spdg~~l~~~~~~~~i~l~d~~~~~~----~~--~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~   83 (106)
                      ...+.++.  ++|+++++++++.|+.|++||..+++.    ..  +...+..++|+|++           +++++|+.|+
T Consensus       168 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~-----------~~l~s~~~dg  236 (437)
T 3gre_A          168 NEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEEC-----------CVLILGTTRG  236 (437)
T ss_dssp             CCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTS-----------CEEEEEETTS
T ss_pred             ccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCC-----------CEEEEEcCCC
Confidence            44566666  668999999999999999999998876    33  56788899999999           9999999999


Q ss_pred             cEEEEECCCCC-----------CCcEEEeCCCC
Q 036317           84 SVYAWSARSGK-----------EPPVIKWAPGS  105 (106)
Q Consensus        84 ~i~~wd~~~~~-----------~v~~i~~sp~~  105 (106)
                      +|++||+++++           .|.+++|+|.+
T Consensus       237 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~  269 (437)
T 3gre_A          237 IIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFY  269 (437)
T ss_dssp             CEEEEETTTTEEEEEEBCTTCEEEEEEEECTTT
T ss_pred             eEEEEEcCCccEEEEEecCCCCceEEEEecccc
Confidence            99999999876           57788777753

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.37  E-value=6.9e-12  Score=96.69  Aligned_cols=87  Identities=18%  Similarity=0.289  Sum_probs=76.6

Q ss_pred             ecCCCCCCeeEEEECCC--CCeEEEEeCCCeEEEEEcCCCce------eccCCCcEEEEEecC--CcceeeeeeecccEE
Q 036317            7 SDGGDVSDANEVKLSND--GRLMLLTTLEGHIHVLHSFQGTL------PVSHNSTLEASFSQH--LSLVALSVLILRSWV   76 (106)
Q Consensus         7 ~~~~~~~~v~~v~~spd--g~~l~~~~~~~~i~l~d~~~~~~------~~~~~~~~~~~fs~d--~~~~~~~~~~~~~~i   76 (106)
                      .+.+|.+.|.+++|+|+  |+++++++.|+.|++||..+++.      ..+...+..+.|+|+  +           +++
T Consensus        48 ~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~-----------~~l  116 (753)
T 3jro_A           48 TLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYG-----------PLL  116 (753)
T ss_dssp             EECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGC-----------SEE
T ss_pred             eccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCC-----------CEE
Confidence            44577889999999998  99999999999999999998863      346667889999999  9           999


Q ss_pred             EEecCCCcEEEEECCCCC------------CCcEEEeCCC
Q 036317           77 LEGSGDGSVYAWSARSGK------------EPPVIKWAPG  104 (106)
Q Consensus        77 ~t~s~d~~i~~wd~~~~~------------~v~~i~~sp~  104 (106)
                      ++|+.||.|++||++++.            .|.++.|+|.
T Consensus       117 ~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~  156 (753)
T 3jro_A          117 LVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPA  156 (753)
T ss_dssp             EEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCC
T ss_pred             EEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCc
Confidence            999999999999999873            7889999984

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.37  E-value=1.5e-11  Score=88.79  Aligned_cols=85  Identities=18%  Similarity=0.223  Sum_probs=71.8

Q ss_pred             CCCCCCeeEEEECC-CCCeEEEEeCCCeEEEEEcCCCc---e----eccCCCcEEEEEecCCcceeeeeeeccc-EEEEe
Q 036317            9 GGDVSDANEVKLSN-DGRLMLLTTLEGHIHVLHSFQGT---L----PVSHNSTLEASFSQHLSLVALSVLILRS-WVLEG   79 (106)
Q Consensus         9 ~~~~~~v~~v~~sp-dg~~l~~~~~~~~i~l~d~~~~~---~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~-~i~t~   79 (106)
                      .++...|.+++|+| ++..+++++.++.|++||..++.   .    ..+...+..++|+|++           + .+++|
T Consensus       228 ~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~-----------~~~l~tg  296 (430)
T 2xyi_A          228 TGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYS-----------EFILATG  296 (430)
T ss_dssp             CCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSC-----------TTEEEEE
T ss_pred             cCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCC-----------CCEEEEE
Confidence            35667899999999 67788899999999999998763   2    3456677889999998           7 68899


Q ss_pred             cCCCcEEEEECCCCC-----------CCcEEEeCCC
Q 036317           80 SGDGSVYAWSARSGK-----------EPPVIKWAPG  104 (106)
Q Consensus        80 s~d~~i~~wd~~~~~-----------~v~~i~~sp~  104 (106)
                      +.|++|++||+++.+           .|.+++|+|.
T Consensus       297 ~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~  332 (430)
T 2xyi_A          297 SADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPH  332 (430)
T ss_dssp             ETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSS
T ss_pred             eCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCC
Confidence            999999999999743           7889999985

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.37  E-value=6.1e-12  Score=91.02  Aligned_cols=83  Identities=12%  Similarity=0.050  Sum_probs=70.4

Q ss_pred             CCCCeeEEEECCCCCeE-EEEeCCCeEEEEEcC--CCce----e--ccCCCcEEEEEecCCcceeeeeeecccEEEEecC
Q 036317           11 DVSDANEVKLSNDGRLM-LLTTLEGHIHVLHSF--QGTL----P--VSHNSTLEASFSQHLSLVALSVLILRSWVLEGSG   81 (106)
Q Consensus        11 ~~~~v~~v~~spdg~~l-~~~~~~~~i~l~d~~--~~~~----~--~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~   81 (106)
                      +.+.|.+++|+|+|+++ ++++.|+.+++||..  +++.    .  .+...+..++|+|++           ++|++++.
T Consensus       101 ~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-----------~~l~~~~~  169 (450)
T 2vdu_B          101 IYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDD-----------TTVIIADK  169 (450)
T ss_dssp             CCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTS-----------SEEEEEET
T ss_pred             cCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCC-----------CEEEEEeC
Confidence            34579999999999996 788899999999998  6665    1  344677889999999           99999999


Q ss_pred             CCcEEEEECCCCC--------------CCcEEEeCCC
Q 036317           82 DGSVYAWSARSGK--------------EPPVIKWAPG  104 (106)
Q Consensus        82 d~~i~~wd~~~~~--------------~v~~i~~sp~  104 (106)
                      ++.+++|++.+++              .|.+++|+|+
T Consensus       170 ~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~  206 (450)
T 2vdu_B          170 FGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKD  206 (450)
T ss_dssp             TSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEEC
T ss_pred             CCcEEEEecCCcccccccceeeecccCceEEEEEcCC
Confidence            9999999987654              6788999886

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.36  E-value=4.6e-12  Score=87.48  Aligned_cols=73  Identities=14%  Similarity=0.216  Sum_probs=63.7

Q ss_pred             CCCCCeeEEEECC---CCCeEEEEeCCCeEEEEEcCCCce----e-----ccCCCcEEEEEecCCcceeeeeeeccc-EE
Q 036317           10 GDVSDANEVKLSN---DGRLMLLTTLEGHIHVLHSFQGTL----P-----VSHNSTLEASFSQHLSLVALSVLILRS-WV   76 (106)
Q Consensus        10 ~~~~~v~~v~~sp---dg~~l~~~~~~~~i~l~d~~~~~~----~-----~~~~~~~~~~fs~d~~~~~~~~~~~~~-~i   76 (106)
                      .+...|.+++|+|   +++++++++.++.+++||..+++.    .     .+...+..+.|+|++           + ++
T Consensus       207 ~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----------~~~l  275 (357)
T 3i2n_A          207 NIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQN-----------RELF  275 (357)
T ss_dssp             ECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTE-----------EEEE
T ss_pred             CCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCC-----------CcEE
Confidence            3456899999999   999999999999999999887654    2     566778889999999           8 89


Q ss_pred             EEecCCCcEEEEECCCC
Q 036317           77 LEGSGDGSVYAWSARSG   93 (106)
Q Consensus        77 ~t~s~d~~i~~wd~~~~   93 (106)
                      ++++.|+.|++||++++
T Consensus       276 ~~~~~dg~i~iwd~~~~  292 (357)
T 3i2n_A          276 LTAGGAGGLHLWKYEYP  292 (357)
T ss_dssp             EEEETTSEEEEEEEECC
T ss_pred             EEEeCCCcEEEeecCCC
Confidence            99999999999999853

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.36  E-value=7.6e-12  Score=89.16  Aligned_cols=75  Identities=12%  Similarity=0.165  Sum_probs=63.6

Q ss_pred             cCCCCCCeeEEEECCCC-CeEEEEeCCCeEEEEEcCCCce--------eccCC------------CcEEEEEecCCccee
Q 036317            8 DGGDVSDANEVKLSNDG-RLMLLTTLEGHIHVLHSFQGTL--------PVSHN------------STLEASFSQHLSLVA   66 (106)
Q Consensus         8 ~~~~~~~v~~v~~spdg-~~l~~~~~~~~i~l~d~~~~~~--------~~~~~------------~~~~~~fs~d~~~~~   66 (106)
                      +.++...|.+++|+|+| +++++++.|+.|++||..+++.        ..+..            .+..++|+|++    
T Consensus       222 ~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g----  297 (447)
T 3dw8_B          222 MEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSG----  297 (447)
T ss_dssp             GGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTS----
T ss_pred             ccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCC----
Confidence            44667799999999999 9999999999999999988763        22222            67889999999    


Q ss_pred             eeeeecccEEEEecCCCcEEEEECCC-CC
Q 036317           67 LSVLILRSWVLEGSGDGSVYAWSARS-GK   94 (106)
Q Consensus        67 ~~~~~~~~~i~t~s~d~~i~~wd~~~-~~   94 (106)
                             ++|++++. +.|++||+++ ++
T Consensus       298 -------~~l~~~~~-~~v~iwd~~~~~~  318 (447)
T 3dw8_B          298 -------RYMMTRDY-LSVKVWDLNMENR  318 (447)
T ss_dssp             -------SEEEEEES-SEEEEEETTCCSS
T ss_pred             -------CEEEEeeC-CeEEEEeCCCCcc
Confidence                   99999999 9999999997 65

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.36  E-value=3.3e-12  Score=95.71  Aligned_cols=87  Identities=11%  Similarity=0.093  Sum_probs=70.3

Q ss_pred             ecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce-----eccCCCcEEE--EEecCCcceeeeeeecccEEEEe
Q 036317            7 SDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL-----PVSHNSTLEA--SFSQHLSLVALSVLILRSWVLEG   79 (106)
Q Consensus         7 ~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~-----~~~~~~~~~~--~fs~d~~~~~~~~~~~~~~i~t~   79 (106)
                      .+.++.+.|.+++|+|++ .+++++.|++|++||+.+++.     ..+...+.++  .|+|++          +++++|+
T Consensus       261 ~l~~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g----------~~~laS~  329 (524)
T 2j04_B          261 TLSLADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFE----------DTVVSTV  329 (524)
T ss_dssp             EECCTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTS----------CCEEEEE
T ss_pred             EEEcCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCC----------CeEEEEe
Confidence            345667899999999875 699999999999999987643     4566777777  578874          1578999


Q ss_pred             cCCCcEEEEECCCCC------------CCcEEEeCCC
Q 036317           80 SGDGSVYAWSARSGK------------EPPVIKWAPG  104 (106)
Q Consensus        80 s~d~~i~~wd~~~~~------------~v~~i~~sp~  104 (106)
                      +.|++|++||+++++            .+.+++|+|+
T Consensus       330 S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~  366 (524)
T 2j04_B          330 AVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQ  366 (524)
T ss_dssp             ETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETT
T ss_pred             ccCCeEEEEECCCCCcccccccccccCcccceEeCCC
Confidence            999999999998754            2678999995

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.36  E-value=2.2e-11  Score=86.77  Aligned_cols=84  Identities=15%  Similarity=0.210  Sum_probs=72.5

Q ss_pred             cCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCc-e----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCC
Q 036317            8 DGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGT-L----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGD   82 (106)
Q Consensus         8 ~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~-~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d   82 (106)
                      +.++...|.+++|  +++++++++.++.+++||..... .    ..+.+.+..+.|+|++           +++++|+.|
T Consensus       172 ~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~-----------~~l~s~~~d  238 (401)
T 4aez_A          172 MAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDG-----------LQLASGGND  238 (401)
T ss_dssp             ECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTS-----------SEEEEEETT
T ss_pred             ecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCC-----------CEEEEEeCC
Confidence            4466779999999  56789999999999999998433 2    4566778899999999           999999999


Q ss_pred             CcEEEEECCCCC----------CCcEEEeCCC
Q 036317           83 GSVYAWSARSGK----------EPPVIKWAPG  104 (106)
Q Consensus        83 ~~i~~wd~~~~~----------~v~~i~~sp~  104 (106)
                      +.|++||+++++          .|.+++|+|.
T Consensus       239 ~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~  270 (401)
T 4aez_A          239 NVVQIWDARSSIPKFTKTNHNAAVKAVAWCPW  270 (401)
T ss_dssp             SCEEEEETTCSSEEEEECCCSSCCCEEEECTT
T ss_pred             CeEEEccCCCCCccEEecCCcceEEEEEECCC
Confidence            999999999876          8899999984

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.35  E-value=7.6e-12  Score=90.09  Aligned_cols=85  Identities=12%  Similarity=0.206  Sum_probs=69.1

Q ss_pred             cCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCC
Q 036317            8 DGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDG   83 (106)
Q Consensus         8 ~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~   83 (106)
                      ..++...+.++  +++++++++++.|+.+++||..+++.    ..+...+..+.|+|++           +++++|+.|+
T Consensus       266 ~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-----------~~l~sg~~dg  332 (464)
T 3v7d_B          266 LRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHER-----------KRCISASMDT  332 (464)
T ss_dssp             ECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTT-----------TEEEEEETTS
T ss_pred             ccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCC-----------CEEEEEeCCC
Confidence            44555566665  78899999999999999999998876    3466778899999999           8888888888


Q ss_pred             cEEEEECCCCC----------CCcEEEeCCCC
Q 036317           84 SVYAWSARSGK----------EPPVIKWAPGS  105 (106)
Q Consensus        84 ~i~~wd~~~~~----------~v~~i~~sp~~  105 (106)
                      .|++||+++++          .|.+++|++++
T Consensus       333 ~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~  364 (464)
T 3v7d_B          333 TIRIWDLENGELMYTLQGHTALVGLLRLSDKF  364 (464)
T ss_dssp             CEEEEETTTTEEEEEECCCSSCEEEEEECSSE
T ss_pred             cEEEEECCCCcEEEEEeCCCCcEEEEEEcCCE
Confidence            89999888776          66777777643

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.35  E-value=9.8e-12  Score=89.70  Aligned_cols=87  Identities=13%  Similarity=0.143  Sum_probs=73.2

Q ss_pred             ecCCCCCCeeEEEECCCCC-eEEEEeCCCeEEEEEcCCCce-----------eccCCCcEEEEEec-CCcceeeeeeecc
Q 036317            7 SDGGDVSDANEVKLSNDGR-LMLLTTLEGHIHVLHSFQGTL-----------PVSHNSTLEASFSQ-HLSLVALSVLILR   73 (106)
Q Consensus         7 ~~~~~~~~v~~v~~spdg~-~l~~~~~~~~i~l~d~~~~~~-----------~~~~~~~~~~~fs~-d~~~~~~~~~~~~   73 (106)
                      .+.+|...|.+++|+|+++ ++++++.++.|++||+.++..           ..+...+..+.|+| ++           
T Consensus       176 ~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~-----------  244 (430)
T 2xyi_A          176 RLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHE-----------  244 (430)
T ss_dssp             EEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCT-----------
T ss_pred             EecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCC-----------
Confidence            3456677999999999998 999999999999999987321           24556778899999 66           


Q ss_pred             cEEEEecCCCcEEEEECCCC---C----------CCcEEEeCCC
Q 036317           74 SWVLEGSGDGSVYAWSARSG---K----------EPPVIKWAPG  104 (106)
Q Consensus        74 ~~i~t~s~d~~i~~wd~~~~---~----------~v~~i~~sp~  104 (106)
                      ..+++++.|+.|++||++++   +          .|++++|+|.
T Consensus       245 ~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~  288 (430)
T 2xyi_A          245 SLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPY  288 (430)
T ss_dssp             TEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSS
T ss_pred             CEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCC
Confidence            89999999999999999976   2          7889999985

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.34  E-value=4.6e-12  Score=91.68  Aligned_cols=74  Identities=23%  Similarity=0.345  Sum_probs=66.3

Q ss_pred             CCCCCCeeEEEECCC---CCeEEEEeCCCeEEEEEcCCCce-----eccCCCcEEEEEecCCcceeeeeeecccEEEEec
Q 036317            9 GGDVSDANEVKLSND---GRLMLLTTLEGHIHVLHSFQGTL-----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGS   80 (106)
Q Consensus         9 ~~~~~~v~~v~~spd---g~~l~~~~~~~~i~l~d~~~~~~-----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s   80 (106)
                      .++.+.|.+++|+|+   ++++++++.|+.|++||+.+++.     ..+...+..++|+ ++           ++|++++
T Consensus       192 ~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~-----------~~l~s~~  259 (450)
T 2vdu_B          192 LGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KD-----------YLLLSAG  259 (450)
T ss_dssp             EECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-ST-----------TEEEEEE
T ss_pred             ecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CC-----------CEEEEEe
Confidence            456678999999999   99999999999999999988875     2466778899999 99           9999999


Q ss_pred             CCCcEEEEECCCCC
Q 036317           81 GDGSVYAWSARSGK   94 (106)
Q Consensus        81 ~d~~i~~wd~~~~~   94 (106)
                      .|++|++||+++++
T Consensus       260 ~d~~v~vwd~~~~~  273 (450)
T 2vdu_B          260 GDDKIFAWDWKTGK  273 (450)
T ss_dssp             SSSEEEEEETTTCC
T ss_pred             CCCeEEEEECCCCc
Confidence            99999999999987

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.34  E-value=3.3e-12  Score=88.05  Aligned_cols=83  Identities=8%  Similarity=-0.017  Sum_probs=73.0

Q ss_pred             CCCCCeeEEEECCCCC-eEEEEeCCCeEEEEEc-CCCce---ec--cCCCcEEEEEecCCcceeeeeeecccEEEEecCC
Q 036317           10 GDVSDANEVKLSNDGR-LMLLTTLEGHIHVLHS-FQGTL---PV--SHNSTLEASFSQHLSLVALSVLILRSWVLEGSGD   82 (106)
Q Consensus        10 ~~~~~v~~v~~spdg~-~l~~~~~~~~i~l~d~-~~~~~---~~--~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d   82 (106)
                      ++...|.+++|+|+++ ++++++.++.+++||. .+++.   ..  +...+..+.|+| +           +++++++.|
T Consensus        54 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~-~-----------~~l~s~~~d  121 (342)
T 1yfq_A           54 RYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYG-D-----------DKLIAASWD  121 (342)
T ss_dssp             ECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEET-T-----------TEEEEEETT
T ss_pred             ecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCceEeccccCCCCceEEEEeCC-C-----------CEEEEEcCC
Confidence            5567999999999999 9999999999999999 88876   44  666778899999 9           999999999


Q ss_pred             CcEEEEECCC---------CC---------CCcEEEeCCC
Q 036317           83 GSVYAWSARS---------GK---------EPPVIKWAPG  104 (106)
Q Consensus        83 ~~i~~wd~~~---------~~---------~v~~i~~sp~  104 (106)
                      +.|++||+++         ++         .+.+++|+|+
T Consensus       122 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  161 (342)
T 1yfq_A          122 GLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSS  161 (342)
T ss_dssp             SEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSS
T ss_pred             CeEEEEcccccccccccccCCeeeEEeeCCceEEEEecCC
Confidence            9999999887         54         6788888875

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.34  E-value=2e-11  Score=87.88  Aligned_cols=86  Identities=12%  Similarity=0.195  Sum_probs=71.2

Q ss_pred             eecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecC
Q 036317            6 FSDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSG   81 (106)
Q Consensus         6 ~~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~   81 (106)
                      ..+.++...|.+++|+|+|+++++++.|+.+++||..+++.    ..+...+..+.|+  +           +++++++.
T Consensus       304 ~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~-----------~~l~s~s~  370 (464)
T 3v7d_B          304 YILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--D-----------KFLVSAAA  370 (464)
T ss_dssp             EEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--S-----------SEEEEEET
T ss_pred             EEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--C-----------CEEEEEeC
Confidence            34456778999999999999999999999999999999887    3456667677775  7           78999999


Q ss_pred             CCcEEEEECCCCC---------CCcEEEeCCC
Q 036317           82 DGSVYAWSARSGK---------EPPVIKWAPG  104 (106)
Q Consensus        82 d~~i~~wd~~~~~---------~v~~i~~sp~  104 (106)
                      |++|++||+++++         .+..+.|+|+
T Consensus       371 dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~  402 (464)
T 3v7d_B          371 DGSIRGWDANDYSRKFSYHHTNLSAITTFYVS  402 (464)
T ss_dssp             TSEEEEEETTTCCEEEEEECTTCCCEEEEEEC
T ss_pred             CCcEEEEECCCCceeeeecCCCCccEEEEEeC
Confidence            9999999999876         5566666654

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.33  E-value=1.9e-11  Score=88.45  Aligned_cols=83  Identities=19%  Similarity=0.217  Sum_probs=68.6

Q ss_pred             CCCCeeEEEECCCCCeEEEEeCCC---eEEEEEcCCCce---eccCCCcEEEEEecCCcceeeeeeecccEEE-EecCCC
Q 036317           11 DVSDANEVKLSNDGRLMLLTTLEG---HIHVLHSFQGTL---PVSHNSTLEASFSQHLSLVALSVLILRSWVL-EGSGDG   83 (106)
Q Consensus        11 ~~~~v~~v~~spdg~~l~~~~~~~---~i~l~d~~~~~~---~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~-t~s~d~   83 (106)
                      +...+.+++|||||++++.++.++   .+++||+.+++.   ..+...+..+.|+|||           ++|+ +++.++
T Consensus       177 ~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~spdg-----------~~la~~~~~~g  245 (415)
T 2hqs_A          177 SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDG-----------SKLAFALSKTG  245 (415)
T ss_dssp             ESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTS-----------SEEEEEECTTS
T ss_pred             CCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecCCCcccCEEEcCCC-----------CEEEEEEecCC
Confidence            445899999999999999998875   999999999877   3345567789999999           8777 666665


Q ss_pred             --cEEEEECCCCC---------CCcEEEeCCC
Q 036317           84 --SVYAWSARSGK---------EPPVIKWAPG  104 (106)
Q Consensus        84 --~i~~wd~~~~~---------~v~~i~~sp~  104 (106)
                        .|++||+++++         .+.+++|+|+
T Consensus       246 ~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spd  277 (415)
T 2hqs_A          246 SLNLYVMDLASGQIRQVTDGRSNNTEPTWFPD  277 (415)
T ss_dssp             SCEEEEEETTTCCEEECCCCSSCEEEEEECTT
T ss_pred             CceEEEEECCCCCEEeCcCCCCcccceEECCC
Confidence              49999999886         6778999986

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.33  E-value=1.1e-11  Score=91.24  Aligned_cols=71  Identities=10%  Similarity=0.210  Sum_probs=62.9

Q ss_pred             CCCCeeEEEECC----------CCCeEEEEeCCCeEEEEEcCCC-ce----eccCCCcEEEEEecCCcceeeeeeecccE
Q 036317           11 DVSDANEVKLSN----------DGRLMLLTTLEGHIHVLHSFQG-TL----PVSHNSTLEASFSQHLSLVALSVLILRSW   75 (106)
Q Consensus        11 ~~~~v~~v~~sp----------dg~~l~~~~~~~~i~l~d~~~~-~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~   75 (106)
                      |...|++++|+|          +++++++++.|+.|++||..++ +.    ..+...+..++|+|++           + 
T Consensus       530 h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~-----------~-  597 (615)
T 1pgu_A          530 RTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-----------T-  597 (615)
T ss_dssp             CSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-----------E-
T ss_pred             CCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcCCC-----------C-
Confidence            677999999999          9999999999999999999987 43    4466788899999999           9 


Q ss_pred             EEEecCCCcEEEEECCCC
Q 036317           76 VLEGSGDGSVYAWSARSG   93 (106)
Q Consensus        76 i~t~s~d~~i~~wd~~~~   93 (106)
                      |++++.|++|++|+++++
T Consensus       598 l~s~~~d~~v~iw~~~~~  615 (615)
T 1pgu_A          598 LVSSGADACIKRWNVVLE  615 (615)
T ss_dssp             EEEEETTSCEEEEEEC--
T ss_pred             eEEecCCceEEEEeeecC
Confidence            999999999999999753

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.32  E-value=4.1e-11  Score=83.88  Aligned_cols=88  Identities=14%  Similarity=0.129  Sum_probs=72.4

Q ss_pred             CCCCCeeEEEECC-CCCeEEEEeCCCeEEEEEcCCCce---eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcE
Q 036317           10 GDVSDANEVKLSN-DGRLMLLTTLEGHIHVLHSFQGTL---PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSV   85 (106)
Q Consensus        10 ~~~~~v~~v~~sp-dg~~l~~~~~~~~i~l~d~~~~~~---~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i   85 (106)
                      ++...|.+++|+| +++++++++.++.+++||..+++.   ......+..+.|+|.+        ....++++++.|+.|
T Consensus        97 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~v  168 (408)
T 4a11_B           97 VHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVS--------TKHCLVAVGTRGPKV  168 (408)
T ss_dssp             CCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSC--------SSCCEEEEEESSSSE
T ss_pred             cCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCC--------CCCcEEEEEcCCCeE
Confidence            4677999999999 788999999999999999998877   3345566778888854        000599999999999


Q ss_pred             EEEECCCCC----------CCcEEEeCCCC
Q 036317           86 YAWSARSGK----------EPPVIKWAPGS  105 (106)
Q Consensus        86 ~~wd~~~~~----------~v~~i~~sp~~  105 (106)
                      ++||+++++          .|.+++|+|+.
T Consensus       169 ~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~  198 (408)
T 4a11_B          169 QLCDLKSGSCSHILQGHRQEILAVSWSPRY  198 (408)
T ss_dssp             EEEESSSSCCCEEECCCCSCEEEEEECSSC
T ss_pred             EEEeCCCcceeeeecCCCCcEEEEEECCCC
Confidence            999999876          78899999863

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.29  E-value=1.9e-11  Score=92.91  Aligned_cols=68  Identities=6%  Similarity=0.120  Sum_probs=58.4

Q ss_pred             CeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce---------------eccCCCcEEEEEecCCcceeeeeeecccEEEE
Q 036317           14 DANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL---------------PVSHNSTLEASFSQHLSLVALSVLILRSWVLE   78 (106)
Q Consensus        14 ~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~---------------~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t   78 (106)
                      .|.+++|||||+++++++.|++|++||+.++..               .+|.+.+.+++|+|||             +++
T Consensus       131 sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg-------------Laa  197 (588)
T 2j04_A          131 TYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV-------------LVA  197 (588)
T ss_dssp             CEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE-------------EEE
T ss_pred             cEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc-------------EEE
Confidence            599999999999999999999999999988752               2244578899999985             678


Q ss_pred             ecCCCcEEEEECCCCC
Q 036317           79 GSGDGSVYAWSARSGK   94 (106)
Q Consensus        79 ~s~d~~i~~wd~~~~~   94 (106)
                      ++.|++|++||+++++
T Consensus       198 ss~D~tVrlWd~~~~~  213 (588)
T 2j04_A          198 ALSNNSVFSMTVSASS  213 (588)
T ss_dssp             EETTCCEEEECCCSSS
T ss_pred             EeCCCeEEEEECCCCc
Confidence            8889999999997654

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.24  E-value=1.2e-10  Score=83.79  Aligned_cols=79  Identities=14%  Similarity=0.238  Sum_probs=65.0

Q ss_pred             CCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEE
Q 036317           11 DVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVY   86 (106)
Q Consensus        11 ~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~   86 (106)
                      +...|.++++  ||+++++++.|+.|++||..+++.    ..+.+.+.++.|  ++           +++++|+.||+|+
T Consensus       132 ~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~-----------~~l~sg~~dg~i~  196 (435)
T 1p22_A          132 TSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DE-----------RVIITGSSDSTVR  196 (435)
T ss_dssp             SCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CS-----------SEEEEEETTSCEE
T ss_pred             CCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CC-----------CEEEEEcCCCeEE
Confidence            3346777766  899999999999999999998876    446667766766  88           8999999999999


Q ss_pred             EEECCCCC----------CCcEEEeCCC
Q 036317           87 AWSARSGK----------EPPVIKWAPG  104 (106)
Q Consensus        87 ~wd~~~~~----------~v~~i~~sp~  104 (106)
                      +||+++++          .|.+++|+++
T Consensus       197 vwd~~~~~~~~~~~~h~~~v~~l~~~~~  224 (435)
T 1p22_A          197 VWDVNTGEMLNTLIHHCEAVLHLRFNNG  224 (435)
T ss_dssp             EEESSSCCEEEEECCCCSCEEEEECCTT
T ss_pred             EEECCCCcEEEEEcCCCCcEEEEEEcCC
Confidence            99999887          6777777764

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.23  E-value=5.3e-11  Score=85.82  Aligned_cols=57  Identities=18%  Similarity=0.274  Sum_probs=47.3

Q ss_pred             CCeEEEEeCCCeEEEEEcCCCce----eccCCCcE-EEEEecCCcceeeeeeecccEEEEecCCCcEEEEECC
Q 036317           24 GRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTL-EASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSAR   91 (106)
Q Consensus        24 g~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~-~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd~~   91 (106)
                      +.++++++.|++|+|||+.+++.    ..+...+. .++|||||           ++|++|+.|++|+|||+.
T Consensus       295 g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG-----------~~LaSGS~D~TIklWd~~  356 (356)
T 2w18_A          295 DHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTD-----------SHLLAGQKDGNIFVYHYS  356 (356)
T ss_dssp             TTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSS-----------SEEEEECTTSCEEEEEEC
T ss_pred             CCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCC-----------CEEEEEECCCcEEEecCC
Confidence            55788899999999999999987    33554444 58999999           999999999999999963

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.23  E-value=1.2e-10  Score=81.96  Aligned_cols=81  Identities=12%  Similarity=0.167  Sum_probs=66.6

Q ss_pred             CCeeEEEECCCCCeEE-EEeCCCeEEEEEcCCCce---eccCCCcEEEEEecCCcceeeeeeecccEE-EEecCCCcEEE
Q 036317           13 SDANEVKLSNDGRLML-LTTLEGHIHVLHSFQGTL---PVSHNSTLEASFSQHLSLVALSVLILRSWV-LEGSGDGSVYA   87 (106)
Q Consensus        13 ~~v~~v~~spdg~~l~-~~~~~~~i~l~d~~~~~~---~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i-~t~s~d~~i~~   87 (106)
                      ..+.+++|+|+|++++ +++.++.+++||..+++.   ......+..++|+|++           ++| ++++.++.|++
T Consensus        32 ~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~spdg-----------~~l~~~~~~~~~v~v  100 (391)
T 1l0q_A           32 SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDG-----------KQVYVTNMASSTLSV  100 (391)
T ss_dssp             SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEECTTS-----------SEEEEEETTTTEEEE
T ss_pred             CCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCCCccceEECCCC-----------CEEEEEECCCCEEEE
Confidence            4689999999999874 556899999999999887   2233467789999999           877 45667799999


Q ss_pred             EECCCCC---------CCcEEEeCCC
Q 036317           88 WSARSGK---------EPPVIKWAPG  104 (106)
Q Consensus        88 wd~~~~~---------~v~~i~~sp~  104 (106)
                      ||+++++         .+.+++|+|+
T Consensus       101 ~d~~~~~~~~~~~~~~~~~~~~~s~d  126 (391)
T 1l0q_A          101 IDTTSNTVAGTVKTGKSPLGLALSPD  126 (391)
T ss_dssp             EETTTTEEEEEEECSSSEEEEEECTT
T ss_pred             EECCCCeEEEEEeCCCCcceEEECCC
Confidence            9999887         6678888886

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.23  E-value=9.9e-11  Score=82.71  Aligned_cols=69  Identities=17%  Similarity=0.262  Sum_probs=56.2

Q ss_pred             CeEEE--EeCCCeEEEEEcCCCc-----------------e---eccCCCcEEEEEecCCcceeeeeeecccEEEEecCC
Q 036317           25 RLMLL--TTLEGHIHVLHSFQGT-----------------L---PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGD   82 (106)
Q Consensus        25 ~~l~~--~~~~~~i~l~d~~~~~-----------------~---~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d   82 (106)
                      ++++.  ++.++.|++||..+++                 .   ..|.+.+..++|+||+           +++++|+.|
T Consensus       148 ~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g-----------~~l~s~s~d  216 (355)
T 3vu4_A          148 GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKS-----------DMVATCSQD  216 (355)
T ss_dssp             TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTS-----------SEEEEEETT
T ss_pred             cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCC-----------CEEEEEeCC
Confidence            34554  4688999999998754                 2   4567788899999999           999999999


Q ss_pred             Cc-EEEEECCCCC------------CCcEEEeCCC
Q 036317           83 GS-VYAWSARSGK------------EPPVIKWAPG  104 (106)
Q Consensus        83 ~~-i~~wd~~~~~------------~v~~i~~sp~  104 (106)
                      ++ |++||+++++            .|.+++|+|+
T Consensus       217 ~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~  251 (355)
T 3vu4_A          217 GTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTD  251 (355)
T ss_dssp             CSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTT
T ss_pred             CCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCC
Confidence            99 9999999876            5788999986

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.21  E-value=2.7e-10  Score=80.09  Aligned_cols=81  Identities=21%  Similarity=0.284  Sum_probs=67.3

Q ss_pred             CCeeEEEECCCCCeEEEEe-CCCeEEEEEcCCCce---eccCCCcEEEEEecCCcceeeeeeecccEE-EEecCCCcEEE
Q 036317           13 SDANEVKLSNDGRLMLLTT-LEGHIHVLHSFQGTL---PVSHNSTLEASFSQHLSLVALSVLILRSWV-LEGSGDGSVYA   87 (106)
Q Consensus        13 ~~v~~v~~spdg~~l~~~~-~~~~i~l~d~~~~~~---~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i-~t~s~d~~i~~   87 (106)
                      ..+..++|+|+|+++++++ .++.+++||..+++.   ......+..++|+|++           +++ ++++.|+.|++
T Consensus        74 ~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg-----------~~l~~~~~~~~~v~~  142 (391)
T 1l0q_A           74 SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDG-----------KKLYVTNNGDKTVSV  142 (391)
T ss_dssp             SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTS-----------SEEEEEETTTTEEEE
T ss_pred             CCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCC-----------CEEEEEeCCCCEEEE
Confidence            3899999999999886655 569999999999877   2344466789999999           877 78888999999


Q ss_pred             EECCCCC---------CCcEEEeCCC
Q 036317           88 WSARSGK---------EPPVIKWAPG  104 (106)
Q Consensus        88 wd~~~~~---------~v~~i~~sp~  104 (106)
                      ||+++++         .+.++.|+|+
T Consensus       143 ~d~~~~~~~~~~~~~~~~~~~~~~~d  168 (391)
T 1l0q_A          143 INTVTKAVINTVSVGRSPKGIAVTPD  168 (391)
T ss_dssp             EETTTTEEEEEEECCSSEEEEEECTT
T ss_pred             EECCCCcEEEEEecCCCcceEEECCC
Confidence            9999876         5677888876

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.19  E-value=1.3e-10  Score=82.75  Aligned_cols=84  Identities=6%  Similarity=0.009  Sum_probs=70.4

Q ss_pred             CCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEE-EEecCCCc
Q 036317           10 GDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWV-LEGSGDGS   84 (106)
Q Consensus        10 ~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i-~t~s~d~~   84 (106)
                      ++.+.|.+++|+|+|+.+++++.++.+++||..+++.    ..+...+..++|+|++           +++ ++++.|+.
T Consensus       167 ~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~l~~~~~~~~~  235 (433)
T 3bws_A          167 KKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIR-----------DLVYCSNWISED  235 (433)
T ss_dssp             TTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTT-----------TEEEEEETTTTE
T ss_pred             ccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCC-----------CEEEEEecCCCc
Confidence            4566899999999999999999999999999988876    3345567789999999           877 56668999


Q ss_pred             EEEEECCCCC---------CCcEEEeCCC
Q 036317           85 VYAWSARSGK---------EPPVIKWAPG  104 (106)
Q Consensus        85 i~~wd~~~~~---------~v~~i~~sp~  104 (106)
                      |++||+++++         .+.+++|+|+
T Consensus       236 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~  264 (433)
T 3bws_A          236 ISVIDRKTKLEIRKTDKIGLPRGLLLSKD  264 (433)
T ss_dssp             EEEEETTTTEEEEECCCCSEEEEEEECTT
T ss_pred             EEEEECCCCcEEEEecCCCCceEEEEcCC
Confidence            9999999876         5678888875

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.16  E-value=1.9e-10  Score=82.67  Aligned_cols=73  Identities=15%  Similarity=0.226  Sum_probs=53.1

Q ss_pred             cCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCC
Q 036317            8 DGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDG   83 (106)
Q Consensus         8 ~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~   83 (106)
                      +.+|.+.+.. .++++|+++++++.|+.+++||..+++.    ..+.+.+..+.|+  +           ..+++|+.|+
T Consensus       114 l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~-----------~~l~s~~~dg  179 (445)
T 2ovr_B          114 LKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--D-----------NIIISGSTDR  179 (445)
T ss_dssp             EECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--T-----------TEEEEEETTS
T ss_pred             ecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--C-----------CEEEEEeCCC
Confidence            4566665433 3666799999999999999999998876    4466677777776  5           5666677777


Q ss_pred             cEEEEECCCCC
Q 036317           84 SVYAWSARSGK   94 (106)
Q Consensus        84 ~i~~wd~~~~~   94 (106)
                      +|++||+++++
T Consensus       180 ~i~vwd~~~~~  190 (445)
T 2ovr_B          180 TLKVWNAETGE  190 (445)
T ss_dssp             CEEEEETTTTE
T ss_pred             eEEEEECCcCc
Confidence            77777766654

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.15  E-value=4.7e-10  Score=80.66  Aligned_cols=82  Identities=16%  Similarity=0.240  Sum_probs=66.9

Q ss_pred             cCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCC
Q 036317            8 DGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDG   83 (106)
Q Consensus         8 ~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~   83 (106)
                      ..++...|.+++|  +++++++++.|+.+++||..+++.    ..+...+..+.|  ++           +++++|+.|+
T Consensus       252 ~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~-----------~~l~~g~~dg  316 (435)
T 1p22_A          252 LVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RD-----------RLVVSGSSDN  316 (435)
T ss_dssp             ECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ET-----------TEEEEEETTS
T ss_pred             ecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CC-----------CEEEEEeCCC
Confidence            4566778999999  889999999999999999998876    345556666666  57           8899999999


Q ss_pred             cEEEEECCCCC----------CCcEEEeCCC
Q 036317           84 SVYAWSARSGK----------EPPVIKWAPG  104 (106)
Q Consensus        84 ~i~~wd~~~~~----------~v~~i~~sp~  104 (106)
                      .|++||+++++          .|.+++|+++
T Consensus       317 ~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~  347 (435)
T 1p22_A          317 TIRLWDIECGACLRVLEGHEELVRCIRFDNK  347 (435)
T ss_dssp             CEEEEETTTCCEEEEECCCSSCEEEEECCSS
T ss_pred             eEEEEECCCCCEEEEEeCCcCcEEEEEecCC
Confidence            99999999887          6677777554

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.11  E-value=1.2e-09  Score=78.85  Aligned_cols=86  Identities=14%  Similarity=0.106  Sum_probs=67.4

Q ss_pred             cCCCCCCeeEEEECCCCCeEEEEeCC-C--eEEEEEcCCCce---eccCCCcEEEEEecCCcceeeeeeecccEEEEecC
Q 036317            8 DGGDVSDANEVKLSNDGRLMLLTTLE-G--HIHVLHSFQGTL---PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSG   81 (106)
Q Consensus         8 ~~~~~~~v~~v~~spdg~~l~~~~~~-~--~i~l~d~~~~~~---~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~   81 (106)
                      +..+...+.+++|+|||++++.++.+ +  .+.+||..+++.   ..+...+..+.|+|||           ++|++++.
T Consensus       262 l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdG-----------~~l~~~~~  330 (415)
T 2hqs_A          262 VTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDG-----------KFMVMVSS  330 (415)
T ss_dssp             CCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTS-----------SEEEEEEE
T ss_pred             CcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEEEecCCCcccCeEECCCC-----------CEEEEEEC
Confidence            33445689999999999999988864 3  788889988776   2233445679999999           88888776


Q ss_pred             C---CcEEEEECCCCC--------CCcEEEeCCC
Q 036317           82 D---GSVYAWSARSGK--------EPPVIKWAPG  104 (106)
Q Consensus        82 d---~~i~~wd~~~~~--------~v~~i~~sp~  104 (106)
                      +   ..|++||+++++        .+.+++|+|+
T Consensus       331 ~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~spd  364 (415)
T 2hqs_A          331 NGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPN  364 (415)
T ss_dssp             CSSCEEEEEEETTTCCEEECCCSSSCEEEEECTT
T ss_pred             cCCceEEEEEECCCCCEEEecCCCCcCCeEEcCC
Confidence            4   589999999887        5778899986

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.11  E-value=5.6e-10  Score=88.49  Aligned_cols=84  Identities=7%  Similarity=0.099  Sum_probs=69.5

Q ss_pred             CCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCC---
Q 036317           10 GDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGD---   82 (106)
Q Consensus        10 ~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d---   82 (106)
                      ++...+..++|||||++++.++.++.+++||+.+++.    ..+.+.+..++|||||           ++|++++.+   
T Consensus       376 ~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG-----------~~la~~~~~~~~  444 (1045)
T 1k32_A          376 ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNS-----------RFIAYGFPLKHG  444 (1045)
T ss_dssp             CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTS-----------CEEEEEEEECSS
T ss_pred             CCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCC-----------CeEEEEecCccc
Confidence            4456899999999999999999999999999999887    2455566779999999           888877654   


Q ss_pred             -------CcEEEEECCCCC---------CCcEEEeCCC
Q 036317           83 -------GSVYAWSARSGK---------EPPVIKWAPG  104 (106)
Q Consensus        83 -------~~i~~wd~~~~~---------~v~~i~~sp~  104 (106)
                             +.|++||+.+++         .+..+.|+|+
T Consensus       445 ~~~~~~~~~i~l~d~~~g~~~~l~~~~~~~~~~~~spd  482 (1045)
T 1k32_A          445 ETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDAD  482 (1045)
T ss_dssp             TTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTT
T ss_pred             cccCCCCCeEEEEECCCCcEEEeeCCCcccCCceEcCC
Confidence                   399999999876         4566788885

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.11  E-value=9.2e-10  Score=78.29  Aligned_cols=84  Identities=11%  Similarity=-0.044  Sum_probs=68.2

Q ss_pred             CCCCCeeEEEECCCCCeEEEEe-CCCeEEEEEcCCCce---eccCCCcEEEEEecCCcceeeeeeecccEEEEec-----
Q 036317           10 GDVSDANEVKLSNDGRLMLLTT-LEGHIHVLHSFQGTL---PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGS-----   80 (106)
Q Consensus        10 ~~~~~v~~v~~spdg~~l~~~~-~~~~i~l~d~~~~~~---~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s-----   80 (106)
                      .+...+..++|+|+|+++++++ .++.+++||..+++.   ......+..+.|+|++           +++++++     
T Consensus       209 ~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g-----------~~l~~~~~~~~~  277 (433)
T 3bws_A          209 LTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDG-----------KELYIAQFSASN  277 (433)
T ss_dssp             CSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECTTS-----------SEEEEEEEESCT
T ss_pred             CCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcCCC-----------CEEEEEECCCCc
Confidence            4455899999999999886655 789999999998876   2233446789999999           8888887     


Q ss_pred             ---CCCcEEEEECCCCC---------CCcEEEeCCC
Q 036317           81 ---GDGSVYAWSARSGK---------EPPVIKWAPG  104 (106)
Q Consensus        81 ---~d~~i~~wd~~~~~---------~v~~i~~sp~  104 (106)
                         .|+.|++||+++++         .+.+++|+|+
T Consensus       278 ~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~  313 (433)
T 3bws_A          278 QESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNT  313 (433)
T ss_dssp             TCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSS
T ss_pred             cccCCCeEEEEECCCCcEEeeccCCCCcceEEECCC
Confidence               58899999999886         6677888875

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.10  E-value=1.5e-09  Score=78.01  Aligned_cols=83  Identities=16%  Similarity=0.285  Sum_probs=61.3

Q ss_pred             cCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCC
Q 036317            8 DGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDG   83 (106)
Q Consensus         8 ~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~   83 (106)
                      +.++...|.+++|  +++++++++.|+.+++||..+++.    ..+...+.  .+++++           +++++|+.|+
T Consensus       275 ~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~--~~~~~~-----------~~l~~~~~dg  339 (445)
T 2ovr_B          275 LQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTS--GMELKD-----------NILVSGNADS  339 (445)
T ss_dssp             ECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEE--EEEEET-----------TEEEEEETTS
T ss_pred             ecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEE--EEEEeC-----------CEEEEEeCCC
Confidence            4456667888887  777888888888888888877765    22333333  334466           8899999999


Q ss_pred             cEEEEECCCCC-------------CCcEEEeCCCC
Q 036317           84 SVYAWSARSGK-------------EPPVIKWAPGS  105 (106)
Q Consensus        84 ~i~~wd~~~~~-------------~v~~i~~sp~~  105 (106)
                      .|++||+++++             .|.+++|++++
T Consensus       340 ~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  374 (445)
T 2ovr_B          340 TVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNF  374 (445)
T ss_dssp             CEEEEETTTCCEEEEECSTTSCSSCEEEEEECSSE
T ss_pred             eEEEEECCCCcEEEEEccCCCCCCCEEEEEECCCE
Confidence            99999999887             57778887653

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.10  E-value=7.3e-10  Score=84.07  Aligned_cols=80  Identities=14%  Similarity=0.172  Sum_probs=66.3

Q ss_pred             CCeeEEEECCCCCeEEEEeC-CC-----eEEEEEcCCCce----eccC------------------------CCcEEEEE
Q 036317           13 SDANEVKLSNDGRLMLLTTL-EG-----HIHVLHSFQGTL----PVSH------------------------NSTLEASF   58 (106)
Q Consensus        13 ~~v~~v~~spdg~~l~~~~~-~~-----~i~l~d~~~~~~----~~~~------------------------~~~~~~~f   58 (106)
                      ..+.+++|||||++++.++. ++     .+++||..+++.    ..+.                        ..+..++|
T Consensus        37 ~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  116 (741)
T 2ecf_A           37 PTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQW  116 (741)
T ss_dssp             CCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEE
T ss_pred             CCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEE
Confidence            47999999999999999988 77     899999998876    1111                        11456899


Q ss_pred             ecCCcceeeeeeecccEEEEecCCCcEEEEECCCC---C---------CCcEEEeCCC
Q 036317           59 SQHLSLVALSVLILRSWVLEGSGDGSVYAWSARSG---K---------EPPVIKWAPG  104 (106)
Q Consensus        59 s~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd~~~~---~---------~v~~i~~sp~  104 (106)
                      ||||           ++|++++. +.|++||+.++   +         .+..++|||+
T Consensus       117 SpDg-----------~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPD  162 (741)
T 2ecf_A          117 SPDA-----------QRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPK  162 (741)
T ss_dssp             CTTS-----------SEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTT
T ss_pred             CCCC-----------CEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCC
Confidence            9999           99988876 89999999988   5         5788999997

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.02  E-value=6.9e-10  Score=84.18  Aligned_cols=68  Identities=13%  Similarity=0.046  Sum_probs=57.1

Q ss_pred             eeEEEECCCCCeEEEEeC---------CCeEEEEEcCCCce---eccCCCcEEEEEecCCcceeeeeeecccEEEEecCC
Q 036317           15 ANEVKLSNDGRLMLLTTL---------EGHIHVLHSFQGTL---PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGD   82 (106)
Q Consensus        15 v~~v~~spdg~~l~~~~~---------~~~i~l~d~~~~~~---~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d   82 (106)
                      +.+++|||||++++.++.         ++++++||+.+++.   ..-...+..++|||||           +.|+.++ +
T Consensus        62 ~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l~~~~~~~~~SPDG-----------~~la~~~-~  129 (719)
T 1z68_A           62 ASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNELPRPIQYLCWSPVG-----------SKLAYVY-Q  129 (719)
T ss_dssp             CSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCSSBCCEEECSST-----------TCEEEEE-T
T ss_pred             eeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceecCcccccceECCCC-----------CEEEEEE-C
Confidence            889999999999998876         68999999998877   3333456679999999           8888885 6


Q ss_pred             CcEEEEECCCCC
Q 036317           83 GSVYAWSARSGK   94 (106)
Q Consensus        83 ~~i~~wd~~~~~   94 (106)
                      +.|++||+.+++
T Consensus       130 ~~i~~~~~~~g~  141 (719)
T 1z68_A          130 NNIYLKQRPGDP  141 (719)
T ss_dssp             TEEEEESSTTSC
T ss_pred             CeEEEEeCCCCC
Confidence            799999998876

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=98.99  E-value=3e-09  Score=72.89  Aligned_cols=82  Identities=17%  Similarity=0.162  Sum_probs=62.8

Q ss_pred             CCCeeEEEECCCCCeEEEEeCC-CeEEEEEcC--CCce-----eccCCCcEEEEEecCCcceeeeeeecccEEEEec-CC
Q 036317           12 VSDANEVKLSNDGRLMLLTTLE-GHIHVLHSF--QGTL-----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGS-GD   82 (106)
Q Consensus        12 ~~~v~~v~~spdg~~l~~~~~~-~~i~l~d~~--~~~~-----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s-~d   82 (106)
                      ...+..++|+|+|+++++++.+ +.+.+|++.  +++.     ......+..++|+|++           ++++.++ .+
T Consensus        37 ~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg-----------~~l~~~~~~~  105 (343)
T 1ri6_A           37 PGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQG-----------QFVFVGSYNA  105 (343)
T ss_dssp             SSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTS-----------SEEEEEETTT
T ss_pred             CCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCCCCcEEEEcCCC-----------CEEEEEecCC
Confidence            3478899999999999888876 999999987  5654     1122356789999999           8776554 48


Q ss_pred             CcEEEEECCCCC------------CCcEEEeCCC
Q 036317           83 GSVYAWSARSGK------------EPPVIKWAPG  104 (106)
Q Consensus        83 ~~i~~wd~~~~~------------~v~~i~~sp~  104 (106)
                      +.|++||+.+++            .+.+++|+|+
T Consensus       106 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~d  139 (343)
T 1ri6_A          106 GNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPD  139 (343)
T ss_dssp             TEEEEEEEETTEEEEEEEEECCCTTBCCCEECTT
T ss_pred             CeEEEEECCCCccccccccccCCCCceEEEECCC
Confidence            899999994322            6778888886

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=98.99  E-value=5.4e-09  Score=71.44  Aligned_cols=76  Identities=11%  Similarity=-0.038  Sum_probs=61.9

Q ss_pred             CCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce---eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEEE
Q 036317           13 SDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL---PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWS   89 (106)
Q Consensus        13 ~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~---~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd   89 (106)
                      ..+..++|+|||++++++  ++.+.+||..+++.   ......+..++|+||+           +++++++.++.|++||
T Consensus       241 ~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg-----------~~l~~~~~~~~i~v~d  307 (337)
T 1pby_B          241 VFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDG-----------STVWLGGALGDLAAYD  307 (337)
T ss_dssp             SCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECTTS-----------CEEEEESBSSEEEEEE
T ss_pred             CceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCCCceeeEEECCCC-----------CEEEEEcCCCcEEEEE
Confidence            356789999999998887  79999999998876   1223356789999999           9888888899999999


Q ss_pred             CCCCCCCcEEEe
Q 036317           90 ARSGKEPPVIKW  101 (106)
Q Consensus        90 ~~~~~~v~~i~~  101 (106)
                      +++++.+..+..
T Consensus       308 ~~~~~~~~~~~~  319 (337)
T 1pby_B          308 AETLEKKGQVDL  319 (337)
T ss_dssp             TTTCCEEEEEEC
T ss_pred             CcCCcEEEEEEc
Confidence            999985555543

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=98.98  E-value=1.6e-09  Score=81.86  Aligned_cols=69  Identities=13%  Similarity=0.031  Sum_probs=56.3

Q ss_pred             CeeEEEECCCCCeEEEEeCC---------CeEEEEEcCCCce---ec---cCCCcEEEEEecCCcceeeeeeecccEEEE
Q 036317           14 DANEVKLSNDGRLMLLTTLE---------GHIHVLHSFQGTL---PV---SHNSTLEASFSQHLSLVALSVLILRSWVLE   78 (106)
Q Consensus        14 ~v~~v~~spdg~~l~~~~~~---------~~i~l~d~~~~~~---~~---~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t   78 (106)
                      .|.+++|||||++++.++.+         +.+.+||+.+++.   ..   +...+..++|||||           ++|+.
T Consensus        62 ~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG-----------~~la~  130 (723)
T 1xfd_A           62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKG-----------QQLIF  130 (723)
T ss_dssp             TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSST-----------TCEEE
T ss_pred             ccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccccccccEECCCC-----------CEEEE
Confidence            48999999999999998764         7888999998875   11   22235678999999           99888


Q ss_pred             ecCCCcEEEEECCCCC
Q 036317           79 GSGDGSVYAWSARSGK   94 (106)
Q Consensus        79 ~s~d~~i~~wd~~~~~   94 (106)
                      ++. +.|++||+.+++
T Consensus       131 ~~~-~~i~~~~~~~g~  145 (723)
T 1xfd_A          131 IFE-NNIYYCAHVGKQ  145 (723)
T ss_dssp             EET-TEEEEESSSSSC
T ss_pred             EEC-CeEEEEECCCCc
Confidence            876 699999999876

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=98.98  E-value=4.1e-09  Score=70.29  Aligned_cols=82  Identities=17%  Similarity=0.171  Sum_probs=61.0

Q ss_pred             CCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCC-Cce----eccC-CCcEEEEEecCCcceeeeeeecccEEEEec--CC
Q 036317           11 DVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQ-GTL----PVSH-NSTLEASFSQHLSLVALSVLILRSWVLEGS--GD   82 (106)
Q Consensus        11 ~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~-~~~----~~~~-~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s--~d   82 (106)
                      +...+.+++|+|||++++++. ++.+++||..+ ++.    ..+. ..+..+.|+||+           ++|++++  .+
T Consensus        40 ~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg-----------~~l~~~~~~~~  107 (297)
T 2ojh_A           40 TPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDG-----------ALYAISDKVEF  107 (297)
T ss_dssp             ESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTS-----------SEEEEEECTTT
T ss_pred             CCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCC-----------CEEEEEEeCCC
Confidence            355899999999999888876 78999999998 766    1221 345568999999           9888887  33


Q ss_pred             C--cEEEEECCCCC--------CCcEEEeCCC
Q 036317           83 G--SVYAWSARSGK--------EPPVIKWAPG  104 (106)
Q Consensus        83 ~--~i~~wd~~~~~--------~v~~i~~sp~  104 (106)
                      +  .|..|++.+++        .+..++|+|+
T Consensus       108 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~spd  139 (297)
T 2ojh_A          108 GKSAIYLLPSTGGTPRLMTKNLPSYWHGWSPD  139 (297)
T ss_dssp             SSCEEEEEETTCCCCEECCSSSSEEEEEECTT
T ss_pred             CcceEEEEECCCCceEEeecCCCccceEECCC
Confidence            4  45555555554        5667788886

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=98.97  E-value=3.4e-09  Score=80.39  Aligned_cols=67  Identities=16%  Similarity=0.181  Sum_probs=56.7

Q ss_pred             eeEEEECCCCCeEEEEeCCCeEEEEEcCCC---ce---eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEE
Q 036317           15 ANEVKLSNDGRLMLLTTLEGHIHVLHSFQG---TL---PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAW   88 (106)
Q Consensus        15 v~~v~~spdg~~l~~~~~~~~i~l~d~~~~---~~---~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~w   88 (106)
                      +.+++|||||++++.++. +.+++||+.++   +.   ..+...+..+.|||||           ++|+.++. +.|++|
T Consensus       111 v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG-----------~~la~~~~-~~i~~~  177 (741)
T 2ecf_A          111 IVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKG-----------GFVSFIRG-RNLWVI  177 (741)
T ss_dssp             SCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTS-----------SEEEEEET-TEEEEE
T ss_pred             cceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCC-----------CEEEEEeC-CcEEEE
Confidence            789999999999998886 99999999988   55   3344567789999999           99888874 589999


Q ss_pred             ECCCCC
Q 036317           89 SARSGK   94 (106)
Q Consensus        89 d~~~~~   94 (106)
                      |+.+++
T Consensus       178 d~~~g~  183 (741)
T 2ecf_A          178 DLASGR  183 (741)
T ss_dssp             ETTTTE
T ss_pred             ecCCCC
Confidence            999876

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=98.96  E-value=1.7e-08  Score=70.56  Aligned_cols=81  Identities=16%  Similarity=0.317  Sum_probs=62.5

Q ss_pred             CCeeEEEECCCCCeEEEEe-CCCeEEEEEcCCCce---------eccCCCcEEEEEecCCcceeeeeeecccEEEEecC-
Q 036317           13 SDANEVKLSNDGRLMLLTT-LEGHIHVLHSFQGTL---------PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSG-   81 (106)
Q Consensus        13 ~~v~~v~~spdg~~l~~~~-~~~~i~l~d~~~~~~---------~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~-   81 (106)
                      .....++|+|||++++++. .++.+.+||..++++         ......+..+.|+|||           ++|+.++. 
T Consensus       211 ~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg-----------~~l~v~~~~  279 (361)
T 3scy_A          211 SGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDG-----------KYLYASNRL  279 (361)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTS-----------SEEEEEECS
T ss_pred             CCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCC-----------CEEEEECCC
Confidence            4678999999999888777 689999999987765         1112334579999999           88866554 


Q ss_pred             -CCcEEEEECC--CCC-----------CCcEEEeCCC
Q 036317           82 -DGSVYAWSAR--SGK-----------EPPVIKWAPG  104 (106)
Q Consensus        82 -d~~i~~wd~~--~~~-----------~v~~i~~sp~  104 (106)
                       ++.|.+|++.  +++           .++.++|+|+
T Consensus       280 ~~~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~spd  316 (361)
T 3scy_A          280 KADGVAIFKVDETNGTLTKVGYQLTGIHPRNFIITPN  316 (361)
T ss_dssp             SSCEEEEEEECTTTCCEEEEEEEECSSCCCEEEECTT
T ss_pred             CCCEEEEEEEcCCCCcEEEeeEecCCCCCceEEECCC
Confidence             4899999995  454           5778889886

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=98.95  E-value=2.9e-09  Score=71.08  Aligned_cols=84  Identities=17%  Similarity=0.142  Sum_probs=62.1

Q ss_pred             CCCCCeeEEEECCCCCeEEEEe-CCCeEEEEEcC--CCce---eccCCCcEEEEEecCCcceeeeeeecccEEEEecCC-
Q 036317           10 GDVSDANEVKLSNDGRLMLLTT-LEGHIHVLHSF--QGTL---PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGD-   82 (106)
Q Consensus        10 ~~~~~v~~v~~spdg~~l~~~~-~~~~i~l~d~~--~~~~---~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d-   82 (106)
                      .+...+..++|+|||++++.++ .++.+++|+..  .+..   ..+...+..+.|+|++           ++|+.++.+ 
T Consensus       170 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg-----------~~l~~~~~~~  238 (297)
T 2ojh_A          170 HGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSG-----------DKVVFVSYDA  238 (297)
T ss_dssp             CSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTS-----------SEEEEEEEET
T ss_pred             cCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCC-----------CEEEEEEcCC
Confidence            3445799999999999888776 48888998865  3333   2233345578999999           888877765 


Q ss_pred             ----------CcEEEEECCCCC------------CCcEEEeCCC
Q 036317           83 ----------GSVYAWSARSGK------------EPPVIKWAPG  104 (106)
Q Consensus        83 ----------~~i~~wd~~~~~------------~v~~i~~sp~  104 (106)
                                +.|++||+++++            .+.+++|+|+
T Consensus       239 ~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spd  282 (297)
T 2ojh_A          239 DVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPD  282 (297)
T ss_dssp             TCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTT
T ss_pred             CCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCC
Confidence                      569999999876            4556677775

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=98.95  E-value=6.6e-10  Score=82.64  Aligned_cols=68  Identities=15%  Similarity=0.015  Sum_probs=57.8

Q ss_pred             eEEEECCCCCeEEEEeCC----CeEEEEEcCCCce---eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCC--cEE
Q 036317           16 NEVKLSNDGRLMLLTTLE----GHIHVLHSFQGTL---PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDG--SVY   86 (106)
Q Consensus        16 ~~v~~spdg~~l~~~~~~----~~i~l~d~~~~~~---~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~--~i~   86 (106)
                      .+++|||||++++.++.+    ..+++||+.+++.   ..+.+.+..++|||||           ++|++++.++  .|+
T Consensus       153 ~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG-----------~~l~~~~~~~~~~i~  221 (582)
T 3o4h_A          153 FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGM-----------KVTAGLETAREARLV  221 (582)
T ss_dssp             CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEEECCSSCEEEEEEECTTS-----------CEEEEEECSSCEEEE
T ss_pred             ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceEeecCCCccccceECCCC-----------CEEEEccCCCeeEEE
Confidence            689999999999988776    7899999988877   3344556789999999           9999888888  899


Q ss_pred             EEECCCCC
Q 036317           87 AWSARSGK   94 (106)
Q Consensus        87 ~wd~~~~~   94 (106)
                      +||+++++
T Consensus       222 ~~d~~~~~  229 (582)
T 3o4h_A          222 TVDPRDGS  229 (582)
T ss_dssp             EECTTTCC
T ss_pred             EEcCCCCc
Confidence            99999876

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=98.92  E-value=7.8e-10  Score=83.60  Aligned_cols=79  Identities=14%  Similarity=0.154  Sum_probs=63.4

Q ss_pred             CeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCC---CcEEEEEecCCcceeeeeeecccEEEEecCC----
Q 036317           14 DANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHN---STLEASFSQHLSLVALSVLILRSWVLEGSGD----   82 (106)
Q Consensus        14 ~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~---~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d----   82 (106)
                      .+.+++|+|||+++++ +.++++++||..+++.    ..+..   .+..++|||||           ++|++++.+    
T Consensus        18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg-----------~~l~~~~~~~~~~   85 (723)
T 1xfd_A           18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDR-----------EYALFSYNVEPIY   85 (723)
T ss_dssp             CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTS-----------SEEEEEESCCCCS
T ss_pred             cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCC-----------CEEEEEecCccce
Confidence            5788999999997665 7899999999998876    22221   36789999999           888888664    


Q ss_pred             -----CcEEEEECCCCC------------CCcEEEeCCC
Q 036317           83 -----GSVYAWSARSGK------------EPPVIKWAPG  104 (106)
Q Consensus        83 -----~~i~~wd~~~~~------------~v~~i~~sp~  104 (106)
                           +.+++||+++++            .+..++|||+
T Consensus        86 ~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPd  124 (723)
T 1xfd_A           86 QHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPK  124 (723)
T ss_dssp             SSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSS
T ss_pred             eecceeeEEEEECCCCceEeccCCccccccccccEECCC
Confidence                 788899999886            2677889986

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=98.90  E-value=1.1e-08  Score=70.41  Aligned_cols=76  Identities=11%  Similarity=-0.049  Sum_probs=61.5

Q ss_pred             CCeeEEEECC-CCCeEEEEeCCCeEEEEEcCCCce---eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEE
Q 036317           13 SDANEVKLSN-DGRLMLLTTLEGHIHVLHSFQGTL---PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAW   88 (106)
Q Consensus        13 ~~v~~v~~sp-dg~~l~~~~~~~~i~l~d~~~~~~---~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~w   88 (106)
                      ..+..++|+| ||++++++  ++.+.+||..+++.   ......+..++|+||+           ++|++++.++.|++|
T Consensus       255 ~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg-----------~~l~~~~~~~~v~v~  321 (349)
T 1jmx_B          255 ELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKG-----------DKLYLGGTFNDLAVF  321 (349)
T ss_dssp             SCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECSSS-----------SCEEEESBSSEEEEE
T ss_pred             CcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCCCCccceEECCCC-----------CEEEEecCCCeEEEE
Confidence            3677899999 99988887  88999999999886   1122345679999999           888888889999999


Q ss_pred             ECCCCCCCcEEEe
Q 036317           89 SARSGKEPPVIKW  101 (106)
Q Consensus        89 d~~~~~~v~~i~~  101 (106)
                      |+++++.+..+..
T Consensus       322 d~~~~~~~~~~~~  334 (349)
T 1jmx_B          322 NPDTLEKVKNIKL  334 (349)
T ss_dssp             ETTTTEEEEEEEC
T ss_pred             eccccceeeeeec
Confidence            9999886655544

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=98.88  E-value=2e-08  Score=68.96  Aligned_cols=79  Identities=10%  Similarity=0.106  Sum_probs=61.9

Q ss_pred             CeeEEEECCCCCeEEEEeC-CCeEEEEEcCCCce----eccCCCcEE-EEEecCCcceeeeeeecccEEEEecCCC---c
Q 036317           14 DANEVKLSNDGRLMLLTTL-EGHIHVLHSFQGTL----PVSHNSTLE-ASFSQHLSLVALSVLILRSWVLEGSGDG---S   84 (106)
Q Consensus        14 ~v~~v~~spdg~~l~~~~~-~~~i~l~d~~~~~~----~~~~~~~~~-~~fs~d~~~~~~~~~~~~~~i~t~s~d~---~   84 (106)
                      .+ .++|+|||+++++++. ++.+.+||..+++.    ......... ++|+||+           ++++++..++   .
T Consensus        42 ~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg-----------~~l~~~~~~~~~~~  109 (331)
T 3u4y_A           42 FV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDD-----------QFAVTVTGLNHPFN  109 (331)
T ss_dssp             EE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTS-----------SEEEECCCSSSSCE
T ss_pred             cc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCC-----------CEEEEecCCCCccc
Confidence            45 9999999998877665 88999999998875    122233445 8999999           9888666553   8


Q ss_pred             EEEEECCCCC---------CCcEEEeCCC
Q 036317           85 VYAWSARSGK---------EPPVIKWAPG  104 (106)
Q Consensus        85 i~~wd~~~~~---------~v~~i~~sp~  104 (106)
                      |++||+++++         .+..++|+|+
T Consensus       110 i~v~d~~~~~~~~~~~~~~~~~~~~~spd  138 (331)
T 3u4y_A          110 MQSYSFLKNKFISTIPIPYDAVGIAISPN  138 (331)
T ss_dssp             EEEEETTTTEEEEEEECCTTEEEEEECTT
T ss_pred             EEEEECCCCCeEEEEECCCCccceEECCC
Confidence            9999999887         5678888886

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=98.87  E-value=2.9e-08  Score=68.42  Aligned_cols=82  Identities=16%  Similarity=0.179  Sum_probs=62.3

Q ss_pred             CCCeeEEEECCCCCeEEEEeC-CCeEEEEEcCCCce--eccCCCcEEEEEecCCcceeeeeeecccEEE-EecCCCcEEE
Q 036317           12 VSDANEVKLSNDGRLMLLTTL-EGHIHVLHSFQGTL--PVSHNSTLEASFSQHLSLVALSVLILRSWVL-EGSGDGSVYA   87 (106)
Q Consensus        12 ~~~v~~v~~spdg~~l~~~~~-~~~i~l~d~~~~~~--~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~-t~s~d~~i~~   87 (106)
                      ...+..++|+|||++++++.. ++.+.+||..+++.  .........+.|+||+           ++++ +...++.|.+
T Consensus       230 ~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~s~dg-----------~~l~v~~~~~~~v~~  298 (353)
T 3vgz_A          230 EHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPESLAVLFNPAR-----------NEAYVTHRQAGKVSV  298 (353)
T ss_dssp             CCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSSCCCEEEETTT-----------TEEEEEETTTTEEEE
T ss_pred             CcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCceEEECCCC-----------CEEEEEECCCCeEEE
Confidence            346778999999998877765 49999999998887  1111223458999999           8554 4457899999


Q ss_pred             EECCCCC---------CCcEEEeCCC
Q 036317           88 WSARSGK---------EPPVIKWAPG  104 (106)
Q Consensus        88 wd~~~~~---------~v~~i~~sp~  104 (106)
                      ||+++++         .+..++|+|+
T Consensus       299 ~d~~~~~~~~~~~~~~~~~~~~~s~d  324 (353)
T 3vgz_A          299 IDAKSYKVVKTFDTPTHPNSLALSAD  324 (353)
T ss_dssp             EETTTTEEEEEEECCSEEEEEEECTT
T ss_pred             EECCCCeEEEEEecCCCCCeEEEcCC
Confidence            9999887         5677788875

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=98.85  E-value=4.6e-08  Score=67.37  Aligned_cols=81  Identities=12%  Similarity=0.268  Sum_probs=63.6

Q ss_pred             CCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----ec----cCCCcEEEEEecCCcceeeeeeecccEEEEecC-CC
Q 036317           13 SDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PV----SHNSTLEASFSQHLSLVALSVLILRSWVLEGSG-DG   83 (106)
Q Consensus        13 ~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~----~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~-d~   83 (106)
                      ..+..++|+|||++++++..++.+.+||..+++.    ..    ....+..++|+||+           ++++.++. ++
T Consensus       185 ~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg-----------~~l~~~~~~~~  253 (353)
T 3vgz_A          185 KMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTAR-----------QRAFITDSKAA  253 (353)
T ss_dssp             TTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTT-----------TEEEEEESSSS
T ss_pred             CccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCC-----------CEEEEEeCCCC
Confidence            3578899999999999999999999999999877    11    23345678999999           87666554 58


Q ss_pred             cEEEEECCCCC--------CCcEEEeCCC
Q 036317           84 SVYAWSARSGK--------EPPVIKWAPG  104 (106)
Q Consensus        84 ~i~~wd~~~~~--------~v~~i~~sp~  104 (106)
                      .|++||+++++        ....+.|+|+
T Consensus       254 ~v~~~d~~~~~~~~~~~~~~~~~~~~s~d  282 (353)
T 3vgz_A          254 EVLVVDTRNGNILAKVAAPESLAVLFNPA  282 (353)
T ss_dssp             EEEEEETTTCCEEEEEECSSCCCEEEETT
T ss_pred             EEEEEECCCCcEEEEEEcCCCceEEECCC
Confidence            99999999988        3345667665

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=98.84  E-value=2.7e-08  Score=67.89  Aligned_cols=80  Identities=15%  Similarity=0.142  Sum_probs=62.0

Q ss_pred             CeeEEEECCCCCeEEEE-eCCCeEEEEEcCCCce----eccC-----CCcEEEEEecCCcceeeeeeecccEEEEec---
Q 036317           14 DANEVKLSNDGRLMLLT-TLEGHIHVLHSFQGTL----PVSH-----NSTLEASFSQHLSLVALSVLILRSWVLEGS---   80 (106)
Q Consensus        14 ~v~~v~~spdg~~l~~~-~~~~~i~l~d~~~~~~----~~~~-----~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s---   80 (106)
                      .+..++|+|||++++++ ..++.+.+||..+++.    ....     ..+..+.|+|||           ++++.++   
T Consensus        35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg-----------~~l~~~~~~~  103 (337)
T 1pby_B           35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDG-----------KTLAIYESPV  103 (337)
T ss_dssp             CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTS-----------SEEEEEEEEE
T ss_pred             CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCC-----------CEEEEEeccc
Confidence            47899999999877554 5678999999998876    1111     145568999999           8877775   


Q ss_pred             ---------CCCcEEEEECCCCC---------CCcEEEeCCC
Q 036317           81 ---------GDGSVYAWSARSGK---------EPPVIKWAPG  104 (106)
Q Consensus        81 ---------~d~~i~~wd~~~~~---------~v~~i~~sp~  104 (106)
                               .++.|++||+++++         .+..+.|+|+
T Consensus       104 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~d  145 (337)
T 1pby_B          104 RLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARD  145 (337)
T ss_dssp             EECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTT
T ss_pred             ccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECCC
Confidence                     57899999999876         5677888876

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=98.83  E-value=1.4e-08  Score=76.82  Aligned_cols=68  Identities=15%  Similarity=0.137  Sum_probs=55.7

Q ss_pred             eeEEEECCCCCeEEEEe---------------------------------CCCeEEEEEcCCCce---e---ccCCCcEE
Q 036317           15 ANEVKLSNDGRLMLLTT---------------------------------LEGHIHVLHSFQGTL---P---VSHNSTLE   55 (106)
Q Consensus        15 v~~v~~spdg~~l~~~~---------------------------------~~~~i~l~d~~~~~~---~---~~~~~~~~   55 (106)
                      +.++.|||||++++.++                                 .+..+++||+.+++.   .   .+...+..
T Consensus       183 ~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~  262 (706)
T 2z3z_A          183 EKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTN  262 (706)
T ss_dssp             CCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEE
T ss_pred             CceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEee
Confidence            68999999999999887                                 447899999998876   1   12334567


Q ss_pred             EEEecCCcceeeeeeecccEEEEecCCC-----cEEEEECCCC
Q 036317           56 ASFSQHLSLVALSVLILRSWVLEGSGDG-----SVYAWSARSG   93 (106)
Q Consensus        56 ~~fs~d~~~~~~~~~~~~~~i~t~s~d~-----~i~~wd~~~~   93 (106)
                      +.|+|||           ++|++++.++     .|++||++++
T Consensus       263 ~~~spdg-----------~~l~~~~~~~~~~~~~v~~~d~~~g  294 (706)
T 2z3z_A          263 LSWSPDE-----------NILYVAEVNRAQNECKVNAYDAETG  294 (706)
T ss_dssp             EEECTTS-----------SEEEEEEECTTSCEEEEEEEETTTC
T ss_pred             EEEECCC-----------CEEEEEEeCCCCCeeEEEEEECCCC
Confidence            9999999           8888877665     9999999998

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=98.81  E-value=3.1e-08  Score=74.26  Aligned_cols=70  Identities=11%  Similarity=0.095  Sum_probs=59.4

Q ss_pred             CeeEEEECCCCCeEEEEeCCCeEEEEEc--CCCce---eccCCCcEEEEEec----CCcceeeeeeecccEEEEecC-CC
Q 036317           14 DANEVKLSNDGRLMLLTTLEGHIHVLHS--FQGTL---PVSHNSTLEASFSQ----HLSLVALSVLILRSWVLEGSG-DG   83 (106)
Q Consensus        14 ~v~~v~~spdg~~l~~~~~~~~i~l~d~--~~~~~---~~~~~~~~~~~fs~----d~~~~~~~~~~~~~~i~t~s~-d~   83 (106)
                      .+..++|||||+++++++.++.|.+||.  .+++.   ......+..++|+|    ||           ++++++++ ++
T Consensus       180 ~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~~p~~va~sp~~~~dg-----------~~l~v~~~~~~  248 (543)
T 1nir_A          180 AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYED-----------RYTIAGAYWPP  248 (543)
T ss_dssp             TEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTT-----------TEEEEEEEESS
T ss_pred             ccceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecCCCcceEEeCCCcCCCC-----------CEEEEEEccCC
Confidence            3789999999999999999999999999  77766   11233456799999    99           99988885 79


Q ss_pred             cEEEEECCCCC
Q 036317           84 SVYAWSARSGK   94 (106)
Q Consensus        84 ~i~~wd~~~~~   94 (106)
                      +|.+||..+++
T Consensus       249 ~v~v~D~~t~~  259 (543)
T 1nir_A          249 QFAIMDGETLE  259 (543)
T ss_dssp             EEEEEETTTCC
T ss_pred             eEEEEeccccc
Confidence            99999999887

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=98.79  E-value=9.3e-08  Score=66.78  Aligned_cols=79  Identities=14%  Similarity=0.290  Sum_probs=58.4

Q ss_pred             CCeeEEEECCCCCeEEEEeCC--CeEEEEEcC--CCce-----eccCCCcEEEEEecCCcceeeeeeecccEEEEec-CC
Q 036317           13 SDANEVKLSNDGRLMLLTTLE--GHIHVLHSF--QGTL-----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGS-GD   82 (106)
Q Consensus        13 ~~v~~v~~spdg~~l~~~~~~--~~i~l~d~~--~~~~-----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s-~d   82 (106)
                      .....++|+|||++++++..+  +.+.+|++.  +++.     ......+..++|+|||           ++|+.++ .+
T Consensus       259 ~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~spdg-----------~~l~~~~~~~  327 (361)
T 3scy_A          259 QGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLTGIHPRNFIITPNG-----------KYLLVACRDT  327 (361)
T ss_dssp             CCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEECSSCCCEEEECTTS-----------CEEEEEETTT
T ss_pred             CCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecCCCCCceEEECCCC-----------CEEEEEECCC
Confidence            356799999999998777654  899999985  5654     1112345679999999           9888776 56


Q ss_pred             CcEEEE--ECCCCC-----------CCcEEEeC
Q 036317           83 GSVYAW--SARSGK-----------EPPVIKWA  102 (106)
Q Consensus        83 ~~i~~w--d~~~~~-----------~v~~i~~s  102 (106)
                      +.|.+|  |.++|+           .+.|+.|.
T Consensus       328 ~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~  360 (361)
T 3scy_A          328 NVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV  360 (361)
T ss_dssp             TEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred             CCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence            899995  555676           56777774

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=98.79  E-value=7.3e-08  Score=65.89  Aligned_cols=80  Identities=11%  Similarity=0.160  Sum_probs=58.6

Q ss_pred             CeeEEEECCCCCeEEEEe-CCCeEEEEEcC--CCce-----eccCCCcEEEEEecCCcceeeeeeecccEEEEec-CCCc
Q 036317           14 DANEVKLSNDGRLMLLTT-LEGHIHVLHSF--QGTL-----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGS-GDGS   84 (106)
Q Consensus        14 ~v~~v~~spdg~~l~~~~-~~~~i~l~d~~--~~~~-----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s-~d~~   84 (106)
                      .+..++|+|||++++++. .++.+.+||..  +++.     ......+..++|+||+           ++++.++ .++.
T Consensus       232 ~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~s~dg-----------~~l~~~~~~~~~  300 (343)
T 1ri6_A          232 WAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSG-----------KYLIAAGQKSHH  300 (343)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTS-----------SEEEEECTTTCE
T ss_pred             CccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCccceEEECCCC-----------CEEEEecCCCCe
Confidence            566899999999887555 78999999987  3433     1122336679999999           8877776 6799


Q ss_pred             EEEE--ECCCCC-----------CCcEEEeCCC
Q 036317           85 VYAW--SARSGK-----------EPPVIKWAPG  104 (106)
Q Consensus        85 i~~w--d~~~~~-----------~v~~i~~sp~  104 (106)
                      |.+|  |.++|+           .+.+++|.|.
T Consensus       301 v~v~~~d~~~g~~~~~~~~~~g~~p~~i~~~~~  333 (343)
T 1ri6_A          301 ISVYEIVGEQGLLHEKGRYAVGQGPMWVVVNAH  333 (343)
T ss_dssp             EEEEEEETTTTEEEEEEEEECSSSCCEEEEEEE
T ss_pred             EEEEEEcCCCceeeEccccccCCCCeeEEEEcc
Confidence            9999  544664           5666666653

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=98.79  E-value=1.9e-08  Score=69.82  Aligned_cols=67  Identities=12%  Similarity=0.063  Sum_probs=52.8

Q ss_pred             CCeeEEEECCCCCeEEEEeC---CCeEEEEEcCCCce------eccCCCcEEEEEecCCcceeeeeeecccEEEEec-CC
Q 036317           13 SDANEVKLSNDGRLMLLTTL---EGHIHVLHSFQGTL------PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGS-GD   82 (106)
Q Consensus        13 ~~v~~v~~spdg~~l~~~~~---~~~i~l~d~~~~~~------~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s-~d   82 (106)
                      .....++|+|||+ +++++.   ++.+.+||+.+++.      ......+..++|+|||           +++++++ .+
T Consensus        40 ~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg-----------~~l~~~~~~~  107 (347)
T 3hfq_A           40 QNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEAR-----------QLVYSANYHK  107 (347)
T ss_dssp             SCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTT-----------TEEEEEETTT
T ss_pred             CCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCC-----------CEEEEEeCCC
Confidence            4567899999999 665554   58999999987764      1234456779999999           9888777 67


Q ss_pred             CcEEEEECC
Q 036317           83 GSVYAWSAR   91 (106)
Q Consensus        83 ~~i~~wd~~   91 (106)
                      +.|.+|++.
T Consensus       108 ~~v~v~~~~  116 (347)
T 3hfq_A          108 GTAEVMKIA  116 (347)
T ss_dssp             TEEEEEEEC
T ss_pred             CEEEEEEeC
Confidence            899999996

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=98.78  E-value=2.1e-08  Score=76.96  Aligned_cols=67  Identities=16%  Similarity=0.092  Sum_probs=55.0

Q ss_pred             eEEEECCCCCeEEEEeCC---------CeEEEEEcCCCce---eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCC
Q 036317           16 NEVKLSNDGRLMLLTTLE---------GHIHVLHSFQGTL---PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDG   83 (106)
Q Consensus        16 ~~v~~spdg~~l~~~~~~---------~~i~l~d~~~~~~---~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~   83 (106)
                      .+++|||||++++.++.+         +.+.+||+.+++.   ..+.+.+..++|||||           +.|+.++ ++
T Consensus        65 ~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~~~SPdG-----------~~la~~~-~~  132 (740)
T 4a5s_A           65 NDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERIPNNTQWVTWSPVG-----------HKLAYVW-NN  132 (740)
T ss_dssp             CEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCTTEEEEEECSST-----------TCEEEEE-TT
T ss_pred             cceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEEcccCCCcceeeEECCCC-----------CEEEEEE-CC
Confidence            458999999999998876         5567999999987   2344567789999999           8888874 67


Q ss_pred             cEEEEECCCCC
Q 036317           84 SVYAWSARSGK   94 (106)
Q Consensus        84 ~i~~wd~~~~~   94 (106)
                      .|++|++.+++
T Consensus       133 ~i~~~~~~~~~  143 (740)
T 4a5s_A          133 DIYVKIEPNLP  143 (740)
T ss_dssp             EEEEESSTTSC
T ss_pred             eEEEEECCCCc
Confidence            99999998876

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=98.78  E-value=6e-09  Score=79.00  Aligned_cols=78  Identities=13%  Similarity=0.166  Sum_probs=61.1

Q ss_pred             eeEEEECCCCCeEEEEeCCCeEEEEEcCCCce---eccC----CCcEEEEEecCCcceeeeeeecccEEEEecC------
Q 036317           15 ANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL---PVSH----NSTLEASFSQHLSLVALSVLILRSWVLEGSG------   81 (106)
Q Consensus        15 v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~---~~~~----~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~------   81 (106)
                      -.+++|+|||+ ++.++.++++++||..+++.   ...+    ..+..++|||||           ++|++++.      
T Consensus        18 ~~~~~~s~dg~-~~~~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg-----------~~la~~~~~~~~~~   85 (719)
T 1z68_A           18 TFFPNWISGQE-YLHQSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDR-----------QFVYLESDYSKLWR   85 (719)
T ss_dssp             CCCCEESSSSE-EEEECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTS-----------SEEEEEEEEEECSS
T ss_pred             CCccEECCCCe-EEEEcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCC-----------CeEEEEecCceeEE
Confidence            34789999996 45556799999999999886   1111    136689999999           88887765      


Q ss_pred             ---CCcEEEEECCCCC---------CCcEEEeCCC
Q 036317           82 ---DGSVYAWSARSGK---------EPPVIKWAPG  104 (106)
Q Consensus        82 ---d~~i~~wd~~~~~---------~v~~i~~sp~  104 (106)
                         ++.|++||+++++         .+..++|||+
T Consensus        86 ~s~~~~i~~~d~~~g~~~~~~~l~~~~~~~~~SPD  120 (719)
T 1z68_A           86 YSYTATYYIYDLSNGEFVRGNELPRPIQYLCWSPV  120 (719)
T ss_dssp             SCEEEEEEEEETTTTEECCSSCCCSSBCCEEECSS
T ss_pred             eecceEEEEEECCCCccccceecCcccccceECCC
Confidence               6899999998876         3677899996

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=98.78  E-value=2.9e-08  Score=75.02  Aligned_cols=66  Identities=14%  Similarity=0.051  Sum_probs=53.3

Q ss_pred             CCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce---eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEEE
Q 036317           13 SDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL---PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWS   89 (106)
Q Consensus        13 ~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~---~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd   89 (106)
                      ..|.+++|||| ++++.+. ++.+++||..+++.   ......+..+.|||||           ++|+++ .|+.|++||
T Consensus        82 ~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG-----------~~la~~-~~~~i~v~~  147 (706)
T 2z3z_A           82 FPSFRTLDAGR-GLVVLFT-QGGLVGFDMLARKVTYLFDTNEETASLDFSPVG-----------DRVAYV-RNHNLYIAR  147 (706)
T ss_dssp             CCCEEEEETTT-TEEEEEE-TTEEEEEETTTTEEEEEECCTTCCTTCEECTTS-----------SEEEEE-ETTEEEEEE
T ss_pred             cCceeEEECCC-CeEEEEE-CCEEEEEECCCCceEEccCCcccccCCcCCCCC-----------CEEEEE-ECCeEEEEe
Confidence            46999999999 6666654 59999999998876   2233445668999999           888885 678999999


Q ss_pred             CCC
Q 036317           90 ARS   92 (106)
Q Consensus        90 ~~~   92 (106)
                      +.+
T Consensus       148 ~~~  150 (706)
T 2z3z_A          148 GGK  150 (706)
T ss_dssp             CBC
T ss_pred             cCc
Confidence            998

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=98.77  E-value=4.2e-08  Score=77.85  Aligned_cols=83  Identities=7%  Similarity=0.014  Sum_probs=69.6

Q ss_pred             CCCC-CeeEEEECCCCCeEEEEeCCCeEE-EEEcCCCce---eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCc
Q 036317           10 GDVS-DANEVKLSNDGRLMLLTTLEGHIH-VLHSFQGTL---PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGS   84 (106)
Q Consensus        10 ~~~~-~v~~v~~spdg~~l~~~~~~~~i~-l~d~~~~~~---~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~   84 (106)
                      .+.+ .+..++|+ ||+.++.++.+..+. +||..+++.   ..+...+..++|||||           ++|++++.++.
T Consensus       334 ~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG-----------~~la~~~~~~~  401 (1045)
T 1k32_A          334 EPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNG-----------KFAVVANDRFE  401 (1045)
T ss_dssp             CCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTS-----------SEEEEEETTSE
T ss_pred             CCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceEecCCccceeeeEECCCC-----------CEEEEECCCCe
Confidence            4445 78899999 999999988888888 899887765   3233456789999999           99999999999


Q ss_pred             EEEEECCCCC----------CCcEEEeCCC
Q 036317           85 VYAWSARSGK----------EPPVIKWAPG  104 (106)
Q Consensus        85 i~~wd~~~~~----------~v~~i~~sp~  104 (106)
                      |++||+++++          .+..++|+|+
T Consensus       402 v~~~d~~tg~~~~~~~~~~~~v~~~~~SpD  431 (1045)
T 1k32_A          402 IMTVDLETGKPTVIERSREAMITDFTISDN  431 (1045)
T ss_dssp             EEEEETTTCCEEEEEECSSSCCCCEEECTT
T ss_pred             EEEEECCCCceEEeccCCCCCccceEECCC
Confidence            9999999887          5688999986

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=98.77  E-value=3e-08  Score=68.11  Aligned_cols=80  Identities=14%  Similarity=0.059  Sum_probs=61.2

Q ss_pred             CeeEEEECCCCCeEEEE-eCCCeEEEEEcCCCce----eccC------CCcEEEEEecCCcceeeeeeecccEEEEecCC
Q 036317           14 DANEVKLSNDGRLMLLT-TLEGHIHVLHSFQGTL----PVSH------NSTLEASFSQHLSLVALSVLILRSWVLEGSGD   82 (106)
Q Consensus        14 ~v~~v~~spdg~~l~~~-~~~~~i~l~d~~~~~~----~~~~------~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d   82 (106)
                      .+..++|+|||++++++ ..++.+.+||..+++.    ....      ..+..+.|+|||           +++++++.+
T Consensus        44 ~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg-----------~~l~~~~~~  112 (349)
T 1jmx_B           44 GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDG-----------KEVYATVNP  112 (349)
T ss_dssp             SSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTS-----------SEEEEEEEE
T ss_pred             CCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCC-----------CEEEEEccc
Confidence            57899999999977554 4689999999998876    1111      124568999999           888877754


Q ss_pred             ------------CcEEEEECCCCC------------CCcEEEeCCC
Q 036317           83 ------------GSVYAWSARSGK------------EPPVIKWAPG  104 (106)
Q Consensus        83 ------------~~i~~wd~~~~~------------~v~~i~~sp~  104 (106)
                                  +.|++||+++++            .+.+++|+|+
T Consensus       113 ~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~d  158 (349)
T 1jmx_B          113 TQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADD  158 (349)
T ss_dssp             EEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTT
T ss_pred             ccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCC
Confidence                        899999998843            4667778875

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=98.77  E-value=1.1e-07  Score=65.88  Aligned_cols=82  Identities=15%  Similarity=0.264  Sum_probs=61.8

Q ss_pred             CCCeeEEEECCCCCeEEEEe-CCCeEEEEEcC-CCce-----ecc----------CCCcEEEEEecCCcceeeeeeeccc
Q 036317           12 VSDANEVKLSNDGRLMLLTT-LEGHIHVLHSF-QGTL-----PVS----------HNSTLEASFSQHLSLVALSVLILRS   74 (106)
Q Consensus        12 ~~~v~~v~~spdg~~l~~~~-~~~~i~l~d~~-~~~~-----~~~----------~~~~~~~~fs~d~~~~~~~~~~~~~   74 (106)
                      ...+..++|+|||+++++++ .++.+.+||+. +++.     ...          ...+..++|+|||           +
T Consensus        85 ~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg-----------~  153 (347)
T 3hfq_A           85 GTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDN-----------R  153 (347)
T ss_dssp             SCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTS-----------C
T ss_pred             CCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCC-----------c
Confidence            34788999999999998887 77999999985 4443     111          1125569999999           8


Q ss_pred             EEEEecCCCcEEEEECC-CCC-------------CCcEEEeCCC
Q 036317           75 WVLEGSGDGSVYAWSAR-SGK-------------EPPVIKWAPG  104 (106)
Q Consensus        75 ~i~t~s~d~~i~~wd~~-~~~-------------~v~~i~~sp~  104 (106)
                      .+++...++.|++|+++ +++             .++.++|+|+
T Consensus       154 l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spd  197 (347)
T 3hfq_A          154 LAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPD  197 (347)
T ss_dssp             EEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTT
T ss_pred             EEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCC
Confidence            77777778899999998 554             3456788886

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=98.75  E-value=2.4e-08  Score=74.88  Aligned_cols=73  Identities=10%  Similarity=0.049  Sum_probs=62.0

Q ss_pred             EECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEEEC--CC
Q 036317           19 KLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSA--RS   92 (106)
Q Consensus        19 ~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd~--~~   92 (106)
                      .++|+++.+++...++++.+||..++++    ...+. +..+.|+|||           +++++++.|++|++||+  ++
T Consensus       144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg-----------~~l~v~~~d~~V~v~D~~~~t  211 (543)
T 1nir_A          144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASG-----------RYLLVIGRDARIDMIDLWAKE  211 (543)
T ss_dssp             CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTS-----------CEEEEEETTSEEEEEETTSSS
T ss_pred             ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCC-----------CEEEEECCCCeEEEEECcCCC
Confidence            3899999889999999999999999987    21222 5568899999           99999999999999999  77


Q ss_pred             CC---------CCcEEEeCC
Q 036317           93 GK---------EPPVIKWAP  103 (106)
Q Consensus        93 ~~---------~v~~i~~sp  103 (106)
                      ++         .++.++|+|
T Consensus       212 ~~~~~~i~~g~~p~~va~sp  231 (543)
T 1nir_A          212 PTKVAEIKIGIEARSVESSK  231 (543)
T ss_dssp             CEEEEEEECCSEEEEEEECC
T ss_pred             CcEEEEEecCCCcceEEeCC
Confidence            76         567888988

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=98.74  E-value=4.5e-08  Score=75.10  Aligned_cols=79  Identities=16%  Similarity=0.172  Sum_probs=61.2

Q ss_pred             CCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCC-----CcEEEEEecCCcceeeeeeecccEEEEecCC-
Q 036317           13 SDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHN-----STLEASFSQHLSLVALSVLILRSWVLEGSGD-   82 (106)
Q Consensus        13 ~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~-----~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d-   82 (106)
                      ....++.|+|||++++++  +++|++||..+++.    ..+..     ......|||||           ++|+.++.+ 
T Consensus        17 ~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg-----------~~l~~~~~~~   83 (740)
T 4a5s_A           17 LKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDG-----------QFILLEYNYV   83 (740)
T ss_dssp             CCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTS-----------SEEEEEEEEE
T ss_pred             ccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCC-----------CEEEEEECCe
Confidence            357789999999988775  89999999999875    22211     11347899999           888877765 


Q ss_pred             --------CcEEEEECCCCC---------CCcEEEeCCC
Q 036317           83 --------GSVYAWSARSGK---------EPPVIKWAPG  104 (106)
Q Consensus        83 --------~~i~~wd~~~~~---------~v~~i~~sp~  104 (106)
                              +.+++||+++++         .+...+|||+
T Consensus        84 ~~~r~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~~~SPd  122 (740)
T 4a5s_A           84 KQWRHSYTASYDIYDLNKRQLITEERIPNNTQWVTWSPV  122 (740)
T ss_dssp             ECSSSCEEEEEEEEETTTTEECCSSCCCTTEEEEEECSS
T ss_pred             eeEEEccceEEEEEECCCCcEEEcccCCCcceeeEECCC
Confidence                    567899999987         4678899996

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=98.73  E-value=4.8e-08  Score=68.43  Aligned_cols=66  Identities=11%  Similarity=0.055  Sum_probs=53.4

Q ss_pred             EEECCCCCeEEEEeC-CC--eEEEEEcCCCce---e-ccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEEEC
Q 036317           18 VKLSNDGRLMLLTTL-EG--HIHVLHSFQGTL---P-VSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSA   90 (106)
Q Consensus        18 v~~spdg~~l~~~~~-~~--~i~l~d~~~~~~---~-~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd~   90 (106)
                      .+|||||++++.++. ++  ++.+||..+++.   . .+......+.|+|||           +.|+.++.++.+++||+
T Consensus        41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg-----------~~l~~~~~~~~l~~~d~  109 (388)
T 3pe7_A           41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDD-----------DALFYVKDGRNLMRVDL  109 (388)
T ss_dssp             CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTS-----------SEEEEEETTTEEEEEET
T ss_pred             ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCC-----------CEEEEEeCCCeEEEEEC
Confidence            789999999998887 55  488899988877   1 122222356899999           99999999999999999


Q ss_pred             CCCC
Q 036317           91 RSGK   94 (106)
Q Consensus        91 ~~~~   94 (106)
                      ++++
T Consensus       110 ~~g~  113 (388)
T 3pe7_A          110 ATLE  113 (388)
T ss_dssp             TTCC
T ss_pred             CCCc
Confidence            9987

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=98.72  E-value=1.6e-08  Score=75.11  Aligned_cols=70  Identities=4%  Similarity=0.033  Sum_probs=56.2

Q ss_pred             CCCCCeeEEEECCCCCeEEEEeCCC--eEEEEEcCCCcee---ccCCCcEEEE--------EecCCcceeeeeeecccEE
Q 036317           10 GDVSDANEVKLSNDGRLMLLTTLEG--HIHVLHSFQGTLP---VSHNSTLEAS--------FSQHLSLVALSVLILRSWV   76 (106)
Q Consensus        10 ~~~~~v~~v~~spdg~~l~~~~~~~--~i~l~d~~~~~~~---~~~~~~~~~~--------fs~d~~~~~~~~~~~~~~i   76 (106)
                      .+.+.+..++|||||++++++..++  +|++||..+++..   .+...+..+.        |+|||           +.+
T Consensus       192 ~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg-----------~~~  260 (582)
T 3o4h_A          192 SGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVEDLELPSKDFSSYRPTAITWLGYLPDG-----------RLA  260 (582)
T ss_dssp             CSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEEECCCSCSHHHHHCCSEEEEEEECTTS-----------CEE
T ss_pred             cCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEEEccCCCcChhhhhhccccceeEcCCC-----------cEE
Confidence            4445789999999999999777888  8999999888762   2222223344        99999           999


Q ss_pred             EEecCCCcEEEEEC
Q 036317           77 LEGSGDGSVYAWSA   90 (106)
Q Consensus        77 ~t~s~d~~i~~wd~   90 (106)
                      ++++.|+++++|++
T Consensus       261 ~~~~~~g~~~l~~~  274 (582)
T 3o4h_A          261 VVARREGRSAVFID  274 (582)
T ss_dssp             EEEEETTEEEEEET
T ss_pred             EEEEcCCcEEEEEE
Confidence            99999999999998

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=98.71  E-value=1.2e-07  Score=67.35  Aligned_cols=74  Identities=19%  Similarity=0.238  Sum_probs=60.0

Q ss_pred             EEEECCCCCeEEEEeC-----------CCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecC
Q 036317           17 EVKLSNDGRLMLLTTL-----------EGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSG   81 (106)
Q Consensus        17 ~v~~spdg~~l~~~~~-----------~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~   81 (106)
                      .++|+||+++++++..           .+++.+||..+++.    +...  +..+.|+|||           +++++++.
T Consensus       258 ~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg-----------~~l~v~n~  324 (361)
T 2oiz_A          258 LVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQR-----------NLMLTLDG  324 (361)
T ss_dssp             CEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTT-----------TEEEEECS
T ss_pred             EEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCC-----------CEEEEeCC
Confidence            3789999988877653           35899999999887    2233  7789999999           99988887


Q ss_pred             CCcEEEEECCCC--C----------CCcEEEeCCC
Q 036317           82 DGSVYAWSARSG--K----------EPPVIKWAPG  104 (106)
Q Consensus        82 d~~i~~wd~~~~--~----------~v~~i~~sp~  104 (106)
                       ++|.+||++++  +          .++.+.++|+
T Consensus       325 -~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~  358 (361)
T 2oiz_A          325 -GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPV  358 (361)
T ss_dssp             -SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCC
T ss_pred             -CeEEEEECCCCcceeeEEeccCCCCcEEEEecCC
Confidence             89999999999  5          4567777775

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=98.67  E-value=3.9e-08  Score=73.81  Aligned_cols=81  Identities=11%  Similarity=0.024  Sum_probs=61.9

Q ss_pred             CCeeEEEECCCCCeEEEEeCC----------CeEEEEEcCC------Cce---e-ccCCCcEEEEEecCCcceeeeeeec
Q 036317           13 SDANEVKLSNDGRLMLLTTLE----------GHIHVLHSFQ------GTL---P-VSHNSTLEASFSQHLSLVALSVLIL   72 (106)
Q Consensus        13 ~~v~~v~~spdg~~l~~~~~~----------~~i~l~d~~~------~~~---~-~~~~~~~~~~fs~d~~~~~~~~~~~   72 (106)
                      ..+..++|||||+.|+.++.+          .++++||..+      ++.   . ........++|||||          
T Consensus       130 ~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG----------  199 (662)
T 3azo_A          130 LRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDG----------  199 (662)
T ss_dssp             EEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTS----------
T ss_pred             ccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceECCCC----------
Confidence            467899999999999988876          5899999987      555   2 233344568999999          


Q ss_pred             ccEEEEecCC--------CcEEEEECC-CC---C----------CCcEEEeCCC
Q 036317           73 RSWVLEGSGD--------GSVYAWSAR-SG---K----------EPPVIKWAPG  104 (106)
Q Consensus        73 ~~~i~t~s~d--------~~i~~wd~~-~~---~----------~v~~i~~sp~  104 (106)
                       ++|+..+.+        ..|++||++ +|   +          .+..+.|+|+
T Consensus       200 -~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spd  252 (662)
T 3azo_A          200 -RQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPD  252 (662)
T ss_dssp             -SEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTT
T ss_pred             -CEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCC
Confidence             888776644        379999999 57   3          4567788875

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=98.64  E-value=1.2e-07  Score=72.33  Aligned_cols=70  Identities=7%  Similarity=0.011  Sum_probs=54.0

Q ss_pred             CeeEEEECCCCCeEEEEeCCC-----eEEEEEcCCCcee---ccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCc-
Q 036317           14 DANEVKLSNDGRLMLLTTLEG-----HIHVLHSFQGTLP---VSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGS-   84 (106)
Q Consensus        14 ~v~~v~~spdg~~l~~~~~~~-----~i~l~d~~~~~~~---~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~-   84 (106)
                      .+..++|||||++++.+..++     +|++||+.+++..   .....+..++|+|||           +.|+.++.++. 
T Consensus       126 ~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wspDg-----------~~l~~~~~~~~~  194 (710)
T 2xdw_A          126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDG-----------KGMFYNAYPQQD  194 (710)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTS-----------SEEEEEECCCCS
T ss_pred             EEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcccceEEEEeCC-----------CEEEEEEECCcc
Confidence            578999999999998776543     8999999999871   111123458999999           87777766655 


Q ss_pred             ---------------EEEEECCCCC
Q 036317           85 ---------------VYAWSARSGK   94 (106)
Q Consensus        85 ---------------i~~wd~~~~~   94 (106)
                                     |++|++.+++
T Consensus       195 ~~~~~~~~~~~~~~~v~~~~l~t~~  219 (710)
T 2xdw_A          195 GKSDGTETSTNLHQKLYYHVLGTDQ  219 (710)
T ss_dssp             SCCSSSCCCCCCCCEEEEEETTSCG
T ss_pred             ccccccccccCCCCEEEEEECCCCc
Confidence                           9999998765

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=98.61  E-value=1.4e-07  Score=71.94  Aligned_cols=70  Identities=11%  Similarity=0.048  Sum_probs=53.7

Q ss_pred             CeeEEEECCCCCeEEEEe-----CCCeEEEEEcCCCcee-c-cCCC--cEEEEEecCCcceeeeeeecccEEEEecCCCc
Q 036317           14 DANEVKLSNDGRLMLLTT-----LEGHIHVLHSFQGTLP-V-SHNS--TLEASFSQHLSLVALSVLILRSWVLEGSGDGS   84 (106)
Q Consensus        14 ~v~~v~~spdg~~l~~~~-----~~~~i~l~d~~~~~~~-~-~~~~--~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~   84 (106)
                      .+..++|||||++++.+.     .+.+|++||+.+++.. . ....  ...++|+|||           +.|+.++.|..
T Consensus       122 ~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~wspDg-----------~~l~~~~~d~~  190 (695)
T 2bkl_A          122 SLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKYATPKWTPDS-----------KGFYYEWLPTD  190 (695)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCTTCCCEECTTS-----------SEEEEEECCCC
T ss_pred             EEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcccccceEEecCC-----------CEEEEEEecCC
Confidence            588999999999998443     3468999999998763 1 1111  1468999999           88888877665


Q ss_pred             -------------EEEEECCCCC
Q 036317           85 -------------VYAWSARSGK   94 (106)
Q Consensus        85 -------------i~~wd~~~~~   94 (106)
                                   |++|++.+++
T Consensus       191 ~~~~~~~~~~~~~v~~~~l~t~~  213 (695)
T 2bkl_A          191 PSIKVDERPGYTTIRYHTLGTEP  213 (695)
T ss_dssp             TTSCGGGGGGGCEEEEEETTSCG
T ss_pred             CCCccccCCCCCEEEEEECCCCc
Confidence                         9999998765

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=98.59  E-value=3.9e-07  Score=62.47  Aligned_cols=79  Identities=10%  Similarity=0.134  Sum_probs=56.7

Q ss_pred             eeEEEECCCCCeEEEEeCCC---eEEEEEcCCCce---eccCCCcEEEEEecCCcceeeeeeecccEEEEe-cCCCc-EE
Q 036317           15 ANEVKLSNDGRLMLLTTLEG---HIHVLHSFQGTL---PVSHNSTLEASFSQHLSLVALSVLILRSWVLEG-SGDGS-VY   86 (106)
Q Consensus        15 v~~v~~spdg~~l~~~~~~~---~i~l~d~~~~~~---~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~-s~d~~-i~   86 (106)
                      ...++|+|||++++++..++   .+.+||..+++.   ......+..++|+|||           ++++.+ ..++. +.
T Consensus        86 ~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg-----------~~l~~~~~~~~~~i~  154 (331)
T 3u4y_A           86 MADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNG-----------NGLILIDRSSANTVR  154 (331)
T ss_dssp             CCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTS-----------SCEEEEEETTTTEEE
T ss_pred             ccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCC-----------CEEEEEecCCCceEE
Confidence            33499999999998544442   899999998877   2233345789999999           755444 55577 99


Q ss_pred             EEECCCCC--------------CCcEEEeCCC
Q 036317           87 AWSARSGK--------------EPPVIKWAPG  104 (106)
Q Consensus        87 ~wd~~~~~--------------~v~~i~~sp~  104 (106)
                      +|++....              .+..++|+|+
T Consensus       155 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spd  186 (331)
T 3u4y_A          155 RFKIDADGVLFDTGQEFISGGTRPFNITFTPD  186 (331)
T ss_dssp             EEEECTTCCEEEEEEEEECSSSSEEEEEECTT
T ss_pred             EEEECCCCcEeecCCccccCCCCccceEECCC
Confidence            99976422              4567788775

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=98.59  E-value=2.6e-07  Score=63.90  Aligned_cols=79  Identities=13%  Similarity=0.093  Sum_probs=56.1

Q ss_pred             CeeEEEECCCCCeEEEEeCC---C--eEEEEEcCCCce---eccCCCcEEEEEecCCcceeeeeeecccEEEEecC----
Q 036317           14 DANEVKLSNDGRLMLLTTLE---G--HIHVLHSFQGTL---PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSG----   81 (106)
Q Consensus        14 ~v~~v~~spdg~~l~~~~~~---~--~i~l~d~~~~~~---~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~----   81 (106)
                      .+..++|||||++++....+   +  .+.++|+.+++.   ..... +..+.|+|||           +.|+.++.    
T Consensus        60 ~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~-~~~~~wspdg-----------~~l~~~~~~~~~  127 (347)
T 2gop_A           60 NATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN-IRSLEWNEDS-----------RKLLIVGFKRRE  127 (347)
T ss_dssp             SCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE-EEEEEECTTS-----------SEEEEEEECCCC
T ss_pred             cCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC-ccceeECCCC-----------CEEEEEEccCCC
Confidence            46789999999999877653   2  478889888776   22223 6779999999           65555542    


Q ss_pred             -----------------------CCcEEEEECCCCCC--------CcEEEeCCC
Q 036317           82 -----------------------DGSVYAWSARSGKE--------PPVIKWAPG  104 (106)
Q Consensus        82 -----------------------d~~i~~wd~~~~~~--------v~~i~~sp~  104 (106)
                                             ...|++||+.+++.        +..+.|+|+
T Consensus       128 ~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~spd  181 (347)
T 2gop_A          128 DEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEKPRFSSGIWHRD  181 (347)
T ss_dssp             ---------CCCC---------CEEEEEEEETTTTEEEEEEEEETTCEEEEETT
T ss_pred             cCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecCCCcccccCCCC
Confidence                                   25799999988763        445566664

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=98.58  E-value=1.1e-06  Score=61.91  Aligned_cols=68  Identities=3%  Similarity=0.072  Sum_probs=52.5

Q ss_pred             CCeeEEEECCCCCeEEEEe-CCCeEEEEEcC-CCcee----c----cCCCcEEEEEecCCcceeeeeeecccEEEEecC-
Q 036317           13 SDANEVKLSNDGRLMLLTT-LEGHIHVLHSF-QGTLP----V----SHNSTLEASFSQHLSLVALSVLILRSWVLEGSG-   81 (106)
Q Consensus        13 ~~v~~v~~spdg~~l~~~~-~~~~i~l~d~~-~~~~~----~----~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~-   81 (106)
                      ..+..++|+|||++++++. .++.|.+||.. +++..    .    +...+..++|+|||           ++++.+++ 
T Consensus       145 ~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg-----------~~l~v~~~~  213 (365)
T 1jof_A          145 TGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTG-----------NYLYALMEA  213 (365)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTS-----------SEEEEEETT
T ss_pred             CcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCC-----------CEEEEEECC
Confidence            4688999999999887765 46899999998 77651    1    13346779999999           88877665 


Q ss_pred             CCcEEEEECC
Q 036317           82 DGSVYAWSAR   91 (106)
Q Consensus        82 d~~i~~wd~~   91 (106)
                      +++|.+|++.
T Consensus       214 ~~~v~v~~~~  223 (365)
T 1jof_A          214 GNRICEYVID  223 (365)
T ss_dssp             TTEEEEEEEC
T ss_pred             CCeEEEEEEe
Confidence            6789998765

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=98.52  E-value=6.8e-07  Score=67.05  Aligned_cols=72  Identities=14%  Similarity=0.175  Sum_probs=54.8

Q ss_pred             CCCeeEEEECCCCCeEEEEeCC--------CeEEEEEcC-CC---ce---ec-cCCCcEEEEEecCCcceeeeeeecccE
Q 036317           12 VSDANEVKLSNDGRLMLLTTLE--------GHIHVLHSF-QG---TL---PV-SHNSTLEASFSQHLSLVALSVLILRSW   75 (106)
Q Consensus        12 ~~~v~~v~~spdg~~l~~~~~~--------~~i~l~d~~-~~---~~---~~-~~~~~~~~~fs~d~~~~~~~~~~~~~~   75 (106)
                      ...+..++|||||++|+.++.+        .+|++||+. ++   +.   .. +...+..+.|+|||           +.
T Consensus       187 ~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg-----------~l  255 (662)
T 3azo_A          187 HRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDG-----------SL  255 (662)
T ss_dssp             SSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTS-----------CE
T ss_pred             CCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCC-----------eE
Confidence            3467788999999999887754        489999998 57   33   22 24566789999999           88


Q ss_pred             EEEecCCC--cEEEEECCCCC
Q 036317           76 VLEGSGDG--SVYAWSARSGK   94 (106)
Q Consensus        76 i~t~s~d~--~i~~wd~~~~~   94 (106)
                      +++++.++  .|++||+++++
T Consensus       256 ~~~~~~~~~~~l~~~~~~~~~  276 (662)
T 3azo_A          256 IVATDRTGWWNLHRVDPATGA  276 (662)
T ss_dssp             EEEECTTSSCEEEEECTTTCC
T ss_pred             EEEECCCCCeEEEEEECCCCc
Confidence            88888888  67777776665

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=98.50  E-value=2.9e-07  Score=64.90  Aligned_cols=79  Identities=8%  Similarity=0.069  Sum_probs=59.2

Q ss_pred             CeeEEEECCCCCeEEEEeCCCeEEEEEcC-CCcee---c--cCCCcEEEEEecCCcceeeeeeeccc--EEEEec-----
Q 036317           14 DANEVKLSNDGRLMLLTTLEGHIHVLHSF-QGTLP---V--SHNSTLEASFSQHLSLVALSVLILRS--WVLEGS-----   80 (106)
Q Consensus        14 ~v~~v~~spdg~~l~~~~~~~~i~l~d~~-~~~~~---~--~~~~~~~~~fs~d~~~~~~~~~~~~~--~i~t~s-----   80 (106)
                      .+..++|+|||+++++++.+ .+.+||+. +++..   .  ..+.+..++|+|||           +  ++++++     
T Consensus        41 ~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg-----------~~l~~~~~~~~~~~  108 (365)
T 1jof_A           41 PISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNT-----------RAIFLLAAKQPPYA  108 (365)
T ss_dssp             CCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCC-----------EEEEEEECSSTTCC
T ss_pred             CCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCC-----------CEEEEEEecCCcce
Confidence            67899999999999888877 99999987 77651   1  11334558899999           7  355554     


Q ss_pred             --------CCCcEEEEECC-CCC--------------CCcEEEeCCC
Q 036317           81 --------GDGSVYAWSAR-SGK--------------EPPVIKWAPG  104 (106)
Q Consensus        81 --------~d~~i~~wd~~-~~~--------------~v~~i~~sp~  104 (106)
                              .++++.+|++. +|+              .+.+++|+|+
T Consensus       109 ~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spd  155 (365)
T 1jof_A          109 VYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPT  155 (365)
T ss_dssp             EEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTT
T ss_pred             eccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCC
Confidence                    68899999997 453              3567788885

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=98.42  E-value=6.8e-06  Score=56.55  Aligned_cols=84  Identities=13%  Similarity=0.200  Sum_probs=63.9

Q ss_pred             CCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCcee----ccCCCcEEEEEecCCcceeeeeeecccEEEEecCC---
Q 036317           10 GDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTLP----VSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGD---   82 (106)
Q Consensus        10 ~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~~----~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d---   82 (106)
                      .+...+..++|+|+|+.+++...++.|.+||..+++..    .....+..+.++|+|           +.+++...+   
T Consensus        42 ~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg-----------~l~v~~~~~~~~  110 (333)
T 2dg1_A           42 KKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDG-----------RLFVCYLGDFKS  110 (333)
T ss_dssp             SSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTS-----------CEEEEECTTSSS
T ss_pred             ccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCC-----------cEEEEeCCCCCC
Confidence            33456789999999997777788899999999888761    233557789999999           877777666   


Q ss_pred             -CcEEEEECCCCC------------CCcEEEeCCC
Q 036317           83 -GSVYAWSARSGK------------EPPVIKWAPG  104 (106)
Q Consensus        83 -~~i~~wd~~~~~------------~v~~i~~sp~  104 (106)
                       +.|++||.++++            .+..+.++|+
T Consensus       111 ~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~  145 (333)
T 2dg1_A          111 TGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSK  145 (333)
T ss_dssp             CCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTT
T ss_pred             CceEEEEeCCCCEEEEEEccCccCCcccceEECCC
Confidence             689999987664            3456666664

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.39  E-value=7.8e-07  Score=62.06  Aligned_cols=69  Identities=7%  Similarity=-0.037  Sum_probs=53.7

Q ss_pred             eeEEEECCCCCeEEEEeCC---CeEEEEEcCCCce---eccCCCcE-EEEEecCCcceeeeeeecccEEEEecCCCcEEE
Q 036317           15 ANEVKLSNDGRLMLLTTLE---GHIHVLHSFQGTL---PVSHNSTL-EASFSQHLSLVALSVLILRSWVLEGSGDGSVYA   87 (106)
Q Consensus        15 v~~v~~spdg~~l~~~~~~---~~i~l~d~~~~~~---~~~~~~~~-~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~   87 (106)
                      +..++|||||++++.+...   ..+.+||..+++.   ........ .+.|+|||           ++|+..+.++.+++
T Consensus        38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg-----------~~l~~~~~~~~l~~  106 (396)
T 3c5m_A           38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDE-----------RAFFYVKNELNLMK  106 (396)
T ss_dssp             TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTS-----------SEEEEEETTTEEEE
T ss_pred             eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCC-----------CEEEEEEcCCcEEE
Confidence            6788999999998877543   4788899988876   11222222 27899999           99999888889999


Q ss_pred             EECCCCC
Q 036317           88 WSARSGK   94 (106)
Q Consensus        88 wd~~~~~   94 (106)
                      ||+.+++
T Consensus       107 ~d~~~~~  113 (396)
T 3c5m_A          107 VDLETLE  113 (396)
T ss_dssp             EETTTCC
T ss_pred             EECCCCC
Confidence            9999887

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=98.39  E-value=2.9e-06  Score=61.71  Aligned_cols=74  Identities=8%  Similarity=-0.031  Sum_probs=56.5

Q ss_pred             eeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEEEC
Q 036317           15 ANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSA   90 (106)
Q Consensus        15 v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd~   90 (106)
                      |+.++|  |+++|+++ .++.+++||..+...    +.+...+..+.+.  .           ..++.+..||++++||+
T Consensus        90 V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~--~-----------p~~av~~~dG~L~v~dl  153 (388)
T 1xip_A           90 VIFVCF--HGDQVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNV--N-----------NTLVILNSVNDLSALDL  153 (388)
T ss_dssp             EEEEEE--ETTEEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEEC--S-----------SEEEEEETTSEEEEEET
T ss_pred             eeEEEE--CCCEEEEE-cCCcEEEEEchhhhccCccceeecceeeEEec--C-----------CCEEEEECCCCEEEEEc
Confidence            999999  99988888 889999999866543    2233333333332  2           33777889999999999


Q ss_pred             CCCC------CCcEEEeCCC
Q 036317           91 RSGK------EPPVIKWAPG  104 (106)
Q Consensus        91 ~~~~------~v~~i~~sp~  104 (106)
                      ++++      .|+|++|||+
T Consensus       154 ~~~~~~~~~~~Vs~v~WSpk  173 (388)
T 1xip_A          154 RTKSTKQLAQNVTSFDVTNS  173 (388)
T ss_dssp             TTCCEEEEEESEEEEEECSS
T ss_pred             cCCccccccCCceEEEEcCC
Confidence            9886      9999999996

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.37  E-value=2.6e-06  Score=59.37  Aligned_cols=69  Identities=12%  Similarity=0.023  Sum_probs=49.9

Q ss_pred             CeeEEEECCCCCeEEEEeCC-----CeEEEEEcCCCcee--ccCCCcEEEEEec-CCcceeeeeeecccEEEEec-----
Q 036317           14 DANEVKLSNDGRLMLLTTLE-----GHIHVLHSFQGTLP--VSHNSTLEASFSQ-HLSLVALSVLILRSWVLEGS-----   80 (106)
Q Consensus        14 ~v~~v~~spdg~~l~~~~~~-----~~i~l~d~~~~~~~--~~~~~~~~~~fs~-d~~~~~~~~~~~~~~i~t~s-----   80 (106)
                      .+..++|+|||++++.++.+     +.+++||..+++..  ...... ...|+| ||           +.++.++     
T Consensus       239 ~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~-~~~~s~~dg-----------~~l~~~~~~~p~  306 (396)
T 3c5m_A          239 SCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPPC-SHLMSNFDG-----------SLMVGDGCDAPV  306 (396)
T ss_dssp             EEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCSE-EEEEECSSS-----------SEEEEEECCC--
T ss_pred             cccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCCCC-CCCccCCCC-----------ceEEEecCCcce
Confidence            47788999999988877544     44999999888761  111122 288999 99           6666543     


Q ss_pred             -----------CCCcEEEEECCCCC
Q 036317           81 -----------GDGSVYAWSARSGK   94 (106)
Q Consensus        81 -----------~d~~i~~wd~~~~~   94 (106)
                                 .+..|++||+++++
T Consensus       307 ~~~~~~~~~~~~~~~i~~~d~~~~~  331 (396)
T 3c5m_A          307 DVADADSYNIENDPFLYVLNTKAKS  331 (396)
T ss_dssp             --------CCCCCCEEEEEETTTTB
T ss_pred             eeccccccccCCCCcEEEEecccCc
Confidence                       34789999998876

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=98.36  E-value=2.9e-06  Score=59.31  Aligned_cols=90  Identities=8%  Similarity=-0.078  Sum_probs=58.3

Q ss_pred             CeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEE--EEEecCCcceeeeeeecccE-----------E
Q 036317           14 DANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLE--ASFSQHLSLVALSVLILRSW-----------V   76 (106)
Q Consensus        14 ~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~--~~fs~d~~~~~~~~~~~~~~-----------i   76 (106)
                      .+..+.|||||++|+.+..++.+++||+.+++.    .........  ..++||+++++........+           .
T Consensus        82 ~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~  161 (388)
T 3pe7_A           82 NTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEF  161 (388)
T ss_dssp             CSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHH
T ss_pred             CccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhh
Confidence            344678999999999999999999999999876    222222222  34589994333211000000           0


Q ss_pred             EEecCCCcEEEEECCCCC---------CCcEEEeCC
Q 036317           77 LEGSGDGSVYAWSARSGK---------EPPVIKWAP  103 (106)
Q Consensus        77 ~t~s~d~~i~~wd~~~~~---------~v~~i~~sp  103 (106)
                      .....+..|++||+++++         .+..++|+|
T Consensus       162 ~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp  197 (388)
T 3pe7_A          162 YFTKPCCRLMRVDLKTGESTVILQENQWLGHPIYRP  197 (388)
T ss_dssp             GGGCCCEEEEEEETTTCCEEEEEEESSCEEEEEEET
T ss_pred             hccCCcceEEEEECCCCceEEeecCCccccccEECC
Confidence            013345789999999987         467788888

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=98.34  E-value=6.5e-06  Score=56.02  Aligned_cols=71  Identities=4%  Similarity=-0.060  Sum_probs=58.0

Q ss_pred             CCCeeEEEECCCCC-eEEEEeCCCeEEEEEcCCCce---eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEE
Q 036317           12 VSDANEVKLSNDGR-LMLLTTLEGHIHVLHSFQGTL---PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYA   87 (106)
Q Consensus        12 ~~~v~~v~~spdg~-~l~~~~~~~~i~l~d~~~~~~---~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~   87 (106)
                      ......++|+|+|+ .+++...++.|+.||..++ .   ......+..+.++|+|           +.+++...++.|.+
T Consensus        27 ~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~l~~~~dg-----------~l~v~~~~~~~i~~   94 (296)
T 3e5z_A           27 FTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-LSPEMHPSHHQNGHCLNKQG-----------HLIACSHGLRRLER   94 (296)
T ss_dssp             CSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-EEEEESSCSSEEEEEECTTC-----------CEEEEETTTTEEEE
T ss_pred             CccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-eEEEECCCCCcceeeECCCC-----------cEEEEecCCCeEEE
Confidence            34678999999999 6677788899999999887 5   2234456789999999           88888877889999


Q ss_pred             EECCCCC
Q 036317           88 WSARSGK   94 (106)
Q Consensus        88 wd~~~~~   94 (106)
                      ||.++|+
T Consensus        95 ~d~~~g~  101 (296)
T 3e5z_A           95 QREPGGE  101 (296)
T ss_dssp             ECSTTCC
T ss_pred             EcCCCCc
Confidence            9998876

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=98.27  E-value=1.5e-05  Score=55.48  Aligned_cols=71  Identities=11%  Similarity=0.102  Sum_probs=57.6

Q ss_pred             CCCeeEEEECCCCCeEEEEeCC------------------------CeEEEEEcCCCcee-----ccCCCcEEEEEecCC
Q 036317           12 VSDANEVKLSNDGRLMLLTTLE------------------------GHIHVLHSFQGTLP-----VSHNSTLEASFSQHL   62 (106)
Q Consensus        12 ~~~v~~v~~spdg~~l~~~~~~------------------------~~i~l~d~~~~~~~-----~~~~~~~~~~fs~d~   62 (106)
                      -+.+..++++|+|+.+++...+                        +.+.+||..++++.     .....+..++++|+|
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g  102 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG  102 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence            3589999999999988777766                        37999999888871     223456789999999


Q ss_pred             cceeeeeeecccEEEEecCCCcEEEEECCCC
Q 036317           63 SLVALSVLILRSWVLEGSGDGSVYAWSARSG   93 (106)
Q Consensus        63 ~~~~~~~~~~~~~i~t~s~d~~i~~wd~~~~   93 (106)
                                 +.+++...++.|++||....
T Consensus       103 -----------~l~v~d~~~~~v~~~~~~g~  122 (329)
T 3fvz_A          103 -----------NYWVTDVALHQVFKLDPHSK  122 (329)
T ss_dssp             -----------CEEEEETTTTEEEEECTTCS
T ss_pred             -----------CEEEEECCCCEEEEEeCCCC
Confidence                       98888888999999998644

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=98.27  E-value=2.1e-05  Score=53.02  Aligned_cols=69  Identities=16%  Similarity=0.256  Sum_probs=52.6

Q ss_pred             CCeeEEEECCCCCeEEEEeCCC-eEEEEEcCCCce----ec--cCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcE
Q 036317           13 SDANEVKLSNDGRLMLLTTLEG-HIHVLHSFQGTL----PV--SHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSV   85 (106)
Q Consensus        13 ~~v~~v~~spdg~~l~~~~~~~-~i~l~d~~~~~~----~~--~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i   85 (106)
                      ..+..++++|+|+.+++...++ .|.+||.. ++.    ..  ....+..++++|+|           +.+++ +.|+.|
T Consensus       207 ~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~~i~~~~~g-----------~l~vs-~~~~~v  273 (286)
T 1q7f_A          207 NYPIGVGINSNGEILIADNHNNFNLTIFTQD-GQLISALESKVKHAQCFDVALMDDG-----------SVVLA-SKDYRL  273 (286)
T ss_dssp             CSEEEEEECTTCCEEEEECSSSCEEEEECTT-SCEEEEEEESSCCSCEEEEEEETTT-----------EEEEE-ETTTEE
T ss_pred             CCCcEEEECCCCCEEEEeCCCCEEEEEECCC-CCEEEEEcccCCCCcceeEEECCCC-----------cEEEE-CCCCeE
Confidence            5788999999999777777775 99999964 443    11  12235679999999           87777 568999


Q ss_pred             EEEECCCCC
Q 036317           86 YAWSARSGK   94 (106)
Q Consensus        86 ~~wd~~~~~   94 (106)
                      ++|++....
T Consensus       274 ~v~~~~~~~  282 (286)
T 1q7f_A          274 YIYRYVQLA  282 (286)
T ss_dssp             EEEECSCCC
T ss_pred             EEEEccccc
Confidence            999987644

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=98.22  E-value=2.8e-06  Score=60.26  Aligned_cols=69  Identities=16%  Similarity=0.114  Sum_probs=54.4

Q ss_pred             EEEECCCCCeEEEEeC----------CCeEEEEEcCCCce----ecc------CCCcEEEEEecCCcceeeeeeecccEE
Q 036317           17 EVKLSNDGRLMLLTTL----------EGHIHVLHSFQGTL----PVS------HNSTLEASFSQHLSLVALSVLILRSWV   76 (106)
Q Consensus        17 ~v~~spdg~~l~~~~~----------~~~i~l~d~~~~~~----~~~------~~~~~~~~fs~d~~~~~~~~~~~~~~i   76 (106)
                      .++|||||++++++..          ++.|.+||..+++.    +..      ...+..+.|+|||           +++
T Consensus        54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg-----------~~l  122 (361)
T 2oiz_A           54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDG-----------KFI  122 (361)
T ss_dssp             EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTS-----------SEE
T ss_pred             ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCC-----------CEE
Confidence            8999999999988863          56799999988776    111      1345668999999           998


Q ss_pred             EEecC--CCcEEEEECCCCCCC
Q 036317           77 LEGSG--DGSVYAWSARSGKEP   96 (106)
Q Consensus        77 ~t~s~--d~~i~~wd~~~~~~v   96 (106)
                      +.++.  +++|.+||+++++.+
T Consensus       123 ~v~n~~~~~~v~v~d~~~~~~~  144 (361)
T 2oiz_A          123 VLQNASPATSIGIVDVAKGDYV  144 (361)
T ss_dssp             EEEEESSSEEEEEEETTTTEEE
T ss_pred             EEECCCCCCeEEEEECCCCcEE
Confidence            88864  579999999988733

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=98.21  E-value=3e-05  Score=52.28  Aligned_cols=81  Identities=7%  Similarity=0.078  Sum_probs=60.1

Q ss_pred             CCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce--e---ccCCCcEEEEEecCCcceeeeeeecccEEEEecCCC-cE
Q 036317           12 VSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL--P---VSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDG-SV   85 (106)
Q Consensus        12 ~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~--~---~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~-~i   85 (106)
                      ...+..++++|+|+.+++...++.|++||......  .   .....+..++++++|           +.+++...++ .|
T Consensus       163 ~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~g~~~~p~~i~~d~~G-----------~l~v~~~~~~~~i  231 (286)
T 1q7f_A          163 LEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNG-----------EILIADNHNNFNL  231 (286)
T ss_dssp             CSSEEEEEECSSSEEEEEEGGGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTC-----------CEEEEECSSSCEE
T ss_pred             cCCcEEEEECCCCCEEEEECCCCEEEEEcCCCCEEEEEccCCccCCCcEEEECCCC-----------CEEEEeCCCCEEE
Confidence            34688999999999777777889999999744333  1   112456789999999           8888888776 99


Q ss_pred             EEEECCCCC------------CCcEEEeCCC
Q 036317           86 YAWSARSGK------------EPPVIKWAPG  104 (106)
Q Consensus        86 ~~wd~~~~~------------~v~~i~~sp~  104 (106)
                      ++||.. ++            .+..++++|+
T Consensus       232 ~~~~~~-g~~~~~~~~~~~~~~~~~i~~~~~  261 (286)
T 1q7f_A          232 TIFTQD-GQLISALESKVKHAQCFDVALMDD  261 (286)
T ss_dssp             EEECTT-SCEEEEEEESSCCSCEEEEEEETT
T ss_pred             EEECCC-CCEEEEEcccCCCCcceeEEECCC
Confidence            999964 44            2446777664

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=98.13  E-value=1.9e-05  Score=59.73  Aligned_cols=75  Identities=11%  Similarity=0.161  Sum_probs=58.3

Q ss_pred             CeeEEEECCCCCeEEEEeCCCeEEEEEcC--CCce--ecc-CCCcEEEEEe----cCCcceeeeeeecccEEEEecCC-C
Q 036317           14 DANEVKLSNDGRLMLLTTLEGHIHVLHSF--QGTL--PVS-HNSTLEASFS----QHLSLVALSVLILRSWVLEGSGD-G   83 (106)
Q Consensus        14 ~v~~v~~spdg~~l~~~~~~~~i~l~d~~--~~~~--~~~-~~~~~~~~fs----~d~~~~~~~~~~~~~~i~t~s~d-~   83 (106)
                      .+..+.|||||+++++++.++.+.+||..  +++.  ... ......+.|+    |||           ++++.+++. +
T Consensus       198 ~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P~~ia~s~~~~pDG-----------k~l~v~n~~~~  266 (567)
T 1qks_A          198 AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWED-----------KYAIAGAYWPP  266 (567)
T ss_dssp             CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTT-----------TEEEEEEEETT
T ss_pred             CccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCCceeEEccccCCCC-----------CEEEEEEccCC
Confidence            56789999999999999999999999996  6665  111 1234678999    699           888777664 7


Q ss_pred             cEEEEECCCCCCCcEE
Q 036317           84 SVYAWSARSGKEPPVI   99 (106)
Q Consensus        84 ~i~~wd~~~~~~v~~i   99 (106)
                      ++.++|..+.+.+..+
T Consensus       267 ~v~ViD~~t~~~~~~i  282 (567)
T 1qks_A          267 QYVIMDGETLEPKKIQ  282 (567)
T ss_dssp             EEEEEETTTCCEEEEE
T ss_pred             eEEEEECCCCcEEEEE
Confidence            9999999888744433

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=98.13  E-value=6.9e-05  Score=50.13  Aligned_cols=78  Identities=6%  Similarity=0.100  Sum_probs=59.9

Q ss_pred             CceeeecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCcee-----ccCCCcEEEEEecCCcceeeeeeecccEE
Q 036317            2 PFDIFSDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTLP-----VSHNSTLEASFSQHLSLVALSVLILRSWV   76 (106)
Q Consensus         2 ~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~~-----~~~~~~~~~~fs~d~~~~~~~~~~~~~~i   76 (106)
                      .+..+.+......+.+++++++|+.+++...++.+.+||.. ++..     .....+..+.++++|           +..
T Consensus         4 ~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g-----------~l~   71 (299)
T 2z2n_A            4 KLQELNLTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDG-----------EVW   71 (299)
T ss_dssp             EEEEEECCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTS-----------CEE
T ss_pred             eEEEEcCCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCC-----------CEE
Confidence            45677777666799999999999977766668899999987 6651     123456778999999           777


Q ss_pred             EEecCCCcEEEEECC
Q 036317           77 LEGSGDGSVYAWSAR   91 (106)
Q Consensus        77 ~t~s~d~~i~~wd~~   91 (106)
                      ++...++.|..||.+
T Consensus        72 v~~~~~~~i~~~~~~   86 (299)
T 2z2n_A           72 FTENAANKIGRITKK   86 (299)
T ss_dssp             EEETTTTEEEEECTT
T ss_pred             EeCCCCCeEEEECCC
Confidence            777667788888865

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=98.08  E-value=8.8e-05  Score=51.50  Aligned_cols=69  Identities=9%  Similarity=0.164  Sum_probs=54.1

Q ss_pred             CeeEEEECC-CCCeEEEEe-CCCeEEEEEcCCCce---ec-----------cCCCcEEEEEecC-CcceeeeeeecccEE
Q 036317           14 DANEVKLSN-DGRLMLLTT-LEGHIHVLHSFQGTL---PV-----------SHNSTLEASFSQH-LSLVALSVLILRSWV   76 (106)
Q Consensus        14 ~v~~v~~sp-dg~~l~~~~-~~~~i~l~d~~~~~~---~~-----------~~~~~~~~~fs~d-~~~~~~~~~~~~~~i   76 (106)
                      ....++++| +|+.+++.+ .++.|.+|| .+++.   ..           ....+..++++|+ +           +.+
T Consensus       144 ~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g-----------~l~  211 (329)
T 3fvz_A          144 QPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLD-----------QLC  211 (329)
T ss_dssp             SEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTT-----------EEE
T ss_pred             CCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCC-----------EEE
Confidence            688999999 788777776 689999999 45654   11           1123677999999 7           778


Q ss_pred             EEecCCCcEEEEECCCCC
Q 036317           77 LEGSGDGSVYAWSARSGK   94 (106)
Q Consensus        77 ~t~s~d~~i~~wd~~~~~   94 (106)
                      ++...++.|++||.++|+
T Consensus       212 v~d~~~~~I~~~~~~~G~  229 (329)
T 3fvz_A          212 VADRENGRIQCFKTDTKE  229 (329)
T ss_dssp             EEETTTTEEEEEETTTCC
T ss_pred             EEECCCCEEEEEECCCCc
Confidence            888889999999999776

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=97.97  E-value=0.00017  Score=49.50  Aligned_cols=82  Identities=17%  Similarity=0.175  Sum_probs=58.4

Q ss_pred             CCCeeEEEECCCCCeEEEEeCC----CeEEEEEcCCCcee------ccCCCcEEEEEecCCcceeeeeeecccEEEEecC
Q 036317           12 VSDANEVKLSNDGRLMLLTTLE----GHIHVLHSFQGTLP------VSHNSTLEASFSQHLSLVALSVLILRSWVLEGSG   81 (106)
Q Consensus        12 ~~~v~~v~~spdg~~l~~~~~~----~~i~l~d~~~~~~~------~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~   81 (106)
                      ...+..++++|+|+.+++...+    +.+.+||..+++..      .....+..+.++|+|           +..++...
T Consensus        86 ~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g-----------~l~v~~~~  154 (333)
T 2dg1_A           86 KANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKG-----------GFYFTDFR  154 (333)
T ss_dssp             SSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTS-----------CEEEEECC
T ss_pred             CCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCC-----------CEEEEecc
Confidence            3478999999999977766665    68999998877652      122346678999999           77776653


Q ss_pred             ------CCcEEEEECCCCC---------CCcEEEeCCC
Q 036317           82 ------DGSVYAWSARSGK---------EPPVIKWAPG  104 (106)
Q Consensus        82 ------d~~i~~wd~~~~~---------~v~~i~~sp~  104 (106)
                            .+.|+.+|.++++         .+..+.|+|+
T Consensus       155 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~d  192 (333)
T 2dg1_A          155 GYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTD  192 (333)
T ss_dssp             CBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTT
T ss_pred             ccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCC
Confidence                  3456666666554         4567788775

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=97.96  E-value=3.3e-05  Score=58.92  Aligned_cols=68  Identities=10%  Similarity=0.020  Sum_probs=51.8

Q ss_pred             CeeEEEECCCCCeEEEEeCCCe----------------EEEEEcCCCce------ec--cCCCcEEEEEecCCcceeeee
Q 036317           14 DANEVKLSNDGRLMLLTTLEGH----------------IHVLHSFQGTL------PV--SHNSTLEASFSQHLSLVALSV   69 (106)
Q Consensus        14 ~v~~v~~spdg~~l~~~~~~~~----------------i~l~d~~~~~~------~~--~~~~~~~~~fs~d~~~~~~~~   69 (106)
                      .+..++|+|||+.++.+..++.                |++|++.+++.      ..  +......+.|||||       
T Consensus       172 ~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg-------  244 (710)
T 2xdw_A          172 KFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDG-------  244 (710)
T ss_dssp             CSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTS-------
T ss_pred             ccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCC-------
Confidence            3567999999999999887765                99999988762      11  22345679999999       


Q ss_pred             eecccEEEEecC-----CCcEEEEECCC
Q 036317           70 LILRSWVLEGSG-----DGSVYAWSARS   92 (106)
Q Consensus        70 ~~~~~~i~t~s~-----d~~i~~wd~~~   92 (106)
                          ++|+..+.     +..|++||+.+
T Consensus       245 ----~~l~~~~~~~~~~~~~l~~~d~~~  268 (710)
T 2xdw_A          245 ----RYVLLSIREGCDPVNRLWYCDLQQ  268 (710)
T ss_dssp             ----CEEEEEEECSSSSCCEEEEEEGGG
T ss_pred             ----CEEEEEEEccCCCccEEEEEECcc
Confidence                77665543     56899999986

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=97.93  E-value=0.00043  Score=46.21  Aligned_cols=76  Identities=9%  Similarity=0.121  Sum_probs=55.4

Q ss_pred             eecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce-----eccCCCcEEEEEecCCcceeeeeeecccEEEEec
Q 036317            6 FSDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL-----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGS   80 (106)
Q Consensus         6 ~~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~-----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s   80 (106)
                      +.+......+..++++|+|+.+++...++.+..+|. +++.     +.....+..+.++++|           +..++..
T Consensus        92 ~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g-----------~l~v~~~  159 (299)
T 2z2n_A           92 YTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDN-----------ALWFTEN  159 (299)
T ss_dssp             EECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTS-----------CEEEEET
T ss_pred             EeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCC-----------CEEEEeC
Confidence            333333457899999999997777777889999998 6665     1123346678999999           7777776


Q ss_pred             CCCcEEEEECCCCC
Q 036317           81 GDGSVYAWSARSGK   94 (106)
Q Consensus        81 ~d~~i~~wd~~~~~   94 (106)
                      .++.|..||. +++
T Consensus       160 ~~~~i~~~~~-~g~  172 (299)
T 2z2n_A          160 QNNAIGRITE-SGD  172 (299)
T ss_dssp             TTTEEEEECT-TCC
T ss_pred             CCCEEEEEcC-CCc
Confidence            6778888887 554

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=97.92  E-value=0.0001  Score=49.96  Aligned_cols=81  Identities=16%  Similarity=0.183  Sum_probs=56.7

Q ss_pred             CCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCcee----c----cCCCcEEEEEecCCcceeeeeeecccEEEE----e
Q 036317           12 VSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTLP----V----SHNSTLEASFSQHLSLVALSVLILRSWVLE----G   79 (106)
Q Consensus        12 ~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~~----~----~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t----~   79 (106)
                      ...+..++++|+|+.+++...++.+.+||..+++..    .    ....+..+.++|+|           +..++    |
T Consensus        68 ~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G-----------~l~vtd~~~g  136 (296)
T 3e5z_A           68 SHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDG-----------SLWFSDPTYG  136 (296)
T ss_dssp             CSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTS-----------CEEEEECSHH
T ss_pred             CCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCC-----------CEEEECCccc
Confidence            456889999999997777666789999999888761    1    11234568999999           77776    3


Q ss_pred             c-------------CCCcEEEEECCCCC---------CCcEEEeCCC
Q 036317           80 S-------------GDGSVYAWSARSGK---------EPPVIKWAPG  104 (106)
Q Consensus        80 s-------------~d~~i~~wd~~~~~---------~v~~i~~sp~  104 (106)
                      .             ..+.|+.++.. ++         .+..++|+|+
T Consensus       137 ~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~gi~~s~d  182 (296)
T 3e5z_A          137 IDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVKPNGLAFLPS  182 (296)
T ss_dssp             HHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSSEEEEEECTT
T ss_pred             cccccccccccccCCCcEEEEECCC-CCEEEeecCCCCCccEEECCC
Confidence            2             12356666554 44         4577888876

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=97.91  E-value=4.1e-05  Score=52.69  Aligned_cols=77  Identities=8%  Similarity=0.063  Sum_probs=56.2

Q ss_pred             CeeEEEECCCCCeEEEEe---------CCCeEEEEEcCCCceeccCCCcEEEEEecCCcceeeeeeecccEEEEecCC--
Q 036317           14 DANEVKLSNDGRLMLLTT---------LEGHIHVLHSFQGTLPVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGD--   82 (106)
Q Consensus        14 ~v~~v~~spdg~~l~~~~---------~~~~i~l~d~~~~~~~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d--   82 (106)
                      .+...++  ||++++...         .+..+.+||..+++...- ..+..+.|||||           ++|+..+.+  
T Consensus        16 ~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l-~~~~~~~~SpDg-----------~~la~~~~~~~   81 (347)
T 2gop_A           16 YLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRFI-ENATMPRISPDG-----------KKIAFMRANEE   81 (347)
T ss_dssp             EEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEEE-ESCEEEEECTTS-----------SEEEEEEEETT
T ss_pred             EcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEEc-ccCCCeEECCCC-----------CEEEEEEeccC
Confidence            6778888  999887653         256789999988876222 455679999999           777766543  


Q ss_pred             -C--cEEEEECCCCC--------CCcEEEeCCC
Q 036317           83 -G--SVYAWSARSGK--------EPPVIKWAPG  104 (106)
Q Consensus        83 -~--~i~~wd~~~~~--------~v~~i~~sp~  104 (106)
                       +  .|++||+++++        .+..++|+|+
T Consensus        82 ~~~~~l~~~~~~~g~~~~l~~~~~~~~~~wspd  114 (347)
T 2gop_A           82 KKVSEIWVADLETLSSKKILEAKNIRSLEWNED  114 (347)
T ss_dssp             TTEEEEEEEETTTTEEEEEEEESEEEEEEECTT
T ss_pred             CCcceEEEEECCCCceEEEEcCCCccceeECCC
Confidence             2  48888888776        2567788886

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=97.91  E-value=7.9e-05  Score=51.02  Aligned_cols=78  Identities=12%  Similarity=0.121  Sum_probs=58.3

Q ss_pred             CeeEEEECCCCCeEEE-EeCCCeEEEEEc--CCCcee---------ccCCCcEEEEEecCCcceeeeeeecccEEEEecC
Q 036317           14 DANEVKLSNDGRLMLL-TTLEGHIHVLHS--FQGTLP---------VSHNSTLEASFSQHLSLVALSVLILRSWVLEGSG   81 (106)
Q Consensus        14 ~v~~v~~spdg~~l~~-~~~~~~i~l~d~--~~~~~~---------~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~   81 (106)
                      ..+.++|+|||+.++. .+.++.|.+||.  .++.+.         ...+.+..++++++|           +..++...
T Consensus       150 ~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G-----------~lwva~~~  218 (297)
T 3g4e_A          150 ISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEG-----------KLWVACYN  218 (297)
T ss_dssp             BEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTS-----------CEEEEEET
T ss_pred             cccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCC-----------CEEEEEcC
Confidence            3568999999997754 456789999986  566541         112345678999999           87777777


Q ss_pred             CCcEEEEECCCCC----------CCcEEEeC
Q 036317           82 DGSVYAWSARSGK----------EPPVIKWA  102 (106)
Q Consensus        82 d~~i~~wd~~~~~----------~v~~i~~s  102 (106)
                      ++.|..||.++|+          .+.+++|+
T Consensus       219 ~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~  249 (297)
T 3g4e_A          219 GGRVIRLDPVTGKRLQTVKLPVDKTTSCCFG  249 (297)
T ss_dssp             TTEEEEECTTTCCEEEEEECSSSBEEEEEEE
T ss_pred             CCEEEEEcCCCceEEEEEECCCCCceEEEEe
Confidence            7889999999887          45677776

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=97.91  E-value=0.0001  Score=52.79  Aligned_cols=73  Identities=14%  Similarity=0.102  Sum_probs=55.6

Q ss_pred             eeEEEECCCCCeEEEEeC----------CCeEEEEEcCCCce--ec-cCCCcEEEEEecCCcceeeeeeeccc-EEEEec
Q 036317           15 ANEVKLSNDGRLMLLTTL----------EGHIHVLHSFQGTL--PV-SHNSTLEASFSQHLSLVALSVLILRS-WVLEGS   80 (106)
Q Consensus        15 v~~v~~spdg~~l~~~~~----------~~~i~l~d~~~~~~--~~-~~~~~~~~~fs~d~~~~~~~~~~~~~-~i~t~s   80 (106)
                      ...+.++|||+.+.++..          +++|.++|..++++  .- -...+..+.|+|||           + .++++.
T Consensus       269 ~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~~p~~i~~s~Dg-----------~~~l~v~~  337 (373)
T 2mad_H          269 WQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDG-----------GPDLYALS  337 (373)
T ss_pred             eEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCCCcCeEEECCCC-----------CeEEEEEc
Confidence            334789999998887654          35899999999887  11 12246679999999           8 677776


Q ss_pred             -CCCcEEEEECCCCCCCcE
Q 036317           81 -GDGSVYAWSARSGKEPPV   98 (106)
Q Consensus        81 -~d~~i~~wd~~~~~~v~~   98 (106)
                       .+++|.++|+++++.+..
T Consensus       338 ~~~~~V~ViD~~t~~vv~~  356 (373)
T 2mad_H          338 AGTEVLHIYDAGAGDQDQS  356 (373)
T ss_pred             CCCCeEEEEECCCCCEEee
Confidence             488999999999985544

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=97.89  E-value=3e-05  Score=56.37  Aligned_cols=72  Identities=8%  Similarity=-0.007  Sum_probs=54.9

Q ss_pred             EEEECCCCCeEEEEe----------CCCeEEEEEcCCCce----eccC-------CCcEEEEEecCCcceeeeeeecccE
Q 036317           17 EVKLSNDGRLMLLTT----------LEGHIHVLHSFQGTL----PVSH-------NSTLEASFSQHLSLVALSVLILRSW   75 (106)
Q Consensus        17 ~v~~spdg~~l~~~~----------~~~~i~l~d~~~~~~----~~~~-------~~~~~~~fs~d~~~~~~~~~~~~~~   75 (106)
                      .+++||||++++++.          .++.+.+||..+++.    ....       ..+..+.|+|||           ++
T Consensus        82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDG-----------k~  150 (386)
T 3sjl_D           82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDG-----------KT  150 (386)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTS-----------SE
T ss_pred             cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCC-----------CE
Confidence            499999999998775          357899999999887    1111       134568999999           88


Q ss_pred             EEEecC--CCcEEEEECCCCCCCcEE
Q 036317           76 VLEGSG--DGSVYAWSARSGKEPPVI   99 (106)
Q Consensus        76 i~t~s~--d~~i~~wd~~~~~~v~~i   99 (106)
                      +..+..  +++|.++|+++++.+..|
T Consensus       151 lyVan~~~~~~VsVID~~t~~vv~tI  176 (386)
T 3sjl_D          151 LLFYQFSPAPAVGVVDLEGKAFKRML  176 (386)
T ss_dssp             EEEEECSSSCEEEEEETTTTEEEEEE
T ss_pred             EEEEEcCCCCeEEEEECCCCcEEEEE
Confidence            777754  679999999999844333

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=97.87  E-value=0.0004  Score=46.38  Aligned_cols=79  Identities=15%  Similarity=0.156  Sum_probs=59.0

Q ss_pred             ceeeecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCcee-----ccCCCcEEEEEecCCcceeeeeeecccEEE
Q 036317            3 FDIFSDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTLP-----VSHNSTLEASFSQHLSLVALSVLILRSWVL   77 (106)
Q Consensus         3 ~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~~-----~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~   77 (106)
                      +..+.+......+.++.++++|+.+++...++.+.++|.. ++..     .....+..+.+++++           +..+
T Consensus        10 ~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g-----------~l~v   77 (300)
T 2qc5_A           10 LEEFNLSIPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLG-----------DIWF   77 (300)
T ss_dssp             EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTS-----------CEEE
T ss_pred             EEEEecCCCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCC-----------CEEE
Confidence            4556666556689999999999977777678999999987 6651     122456778899999           7777


Q ss_pred             EecCCCcEEEEECCCCC
Q 036317           78 EGSGDGSVYAWSARSGK   94 (106)
Q Consensus        78 t~s~d~~i~~wd~~~~~   94 (106)
                      +...++.|..+|.. ++
T Consensus        78 ~~~~~~~v~~~d~~-g~   93 (300)
T 2qc5_A           78 TENGANKIGKLSKK-GG   93 (300)
T ss_dssp             EETTTTEEEEECTT-SC
T ss_pred             EecCCCeEEEECCC-CC
Confidence            66667788888876 44

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=97.86  E-value=0.00043  Score=45.84  Aligned_cols=81  Identities=12%  Similarity=0.116  Sum_probs=61.3

Q ss_pred             CCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCcee----ccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEE
Q 036317           13 SDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTLP----VSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAW   88 (106)
Q Consensus        13 ~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~~----~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~w   88 (106)
                      ..+..++++|+|+.+++...++.|.+||.......    .....+..++++++|           ...++...++.|.+|
T Consensus       150 ~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g-----------~l~v~~~~~~~v~~~  218 (270)
T 1rwi_B          150 NDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAG-----------TVYVTEHNTNQVVKL  218 (270)
T ss_dssp             CSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTC-----------CEEEEETTTSCEEEE
T ss_pred             CCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCC-----------CEEEEECCCCcEEEE
Confidence            36789999999997777667889999998776551    122456779999999           888888788899999


Q ss_pred             ECCCCC----------CCcEEEeCCC
Q 036317           89 SARSGK----------EPPVIKWAPG  104 (106)
Q Consensus        89 d~~~~~----------~v~~i~~sp~  104 (106)
                      |.....          .+..+.++|+
T Consensus       219 ~~~~~~~~~~~~~~~~~p~~i~~~~~  244 (270)
T 1rwi_B          219 LAGSTTSTVLPFTGLNTPLAVAVDSD  244 (270)
T ss_dssp             CTTCSCCEECCCCSCSCEEEEEECTT
T ss_pred             cCCCCcceeeccCCCCCceeEEECCC
Confidence            987543          3566777664

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=97.85  E-value=0.00012  Score=52.38  Aligned_cols=68  Identities=9%  Similarity=-0.051  Sum_probs=52.5

Q ss_pred             EEEECCCCCeEEEEe----------CCCeEEEEEcCCCce----ecc-------CCCcEEEEEecCCcceeeeeeecccE
Q 036317           17 EVKLSNDGRLMLLTT----------LEGHIHVLHSFQGTL----PVS-------HNSTLEASFSQHLSLVALSVLILRSW   75 (106)
Q Consensus        17 ~v~~spdg~~l~~~~----------~~~~i~l~d~~~~~~----~~~-------~~~~~~~~fs~d~~~~~~~~~~~~~~   75 (106)
                      .+++||||++++++.          .++.+.++|..+.+.    +..       ...+..+.|+|||           ++
T Consensus        70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG-----------~~  138 (373)
T 2mad_H           70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNN-----------AD  138 (373)
T ss_pred             CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCC-----------CE
Confidence            999999999998876          367899999988766    111       1234468999999           98


Q ss_pred             EEEecC--CCcEEEEECCCCCCC
Q 036317           76 VLEGSG--DGSVYAWSARSGKEP   96 (106)
Q Consensus        76 i~t~s~--d~~i~~wd~~~~~~v   96 (106)
                      ++.++.  +++|.++| ++++.+
T Consensus       139 l~v~n~~~~~~v~viD-~t~~~~  160 (373)
T 2mad_H          139 LLFFQFAAGPAVGLVV-QGGSSD  160 (373)
T ss_pred             EEEEecCCCCeEEEEE-CCCCEE
Confidence            888764  47899999 988733

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=97.85  E-value=4.8e-05  Score=58.41  Aligned_cols=90  Identities=9%  Similarity=0.025  Sum_probs=56.3

Q ss_pred             CeeEEEECCCCCeEEEEeCC-----CeEEEEEcCCCce-ec--cCCCcEEEEEecCCcceeeeeeeccc---EEEEecCC
Q 036317           14 DANEVKLSNDGRLMLLTTLE-----GHIHVLHSFQGTL-PV--SHNSTLEASFSQHLSLVALSVLILRS---WVLEGSGD   82 (106)
Q Consensus        14 ~v~~v~~spdg~~l~~~~~~-----~~i~l~d~~~~~~-~~--~~~~~~~~~fs~d~~~~~~~~~~~~~---~i~t~s~d   82 (106)
                      .+..++|||||++++.+..+     .+|++||+.+++. ..  .......++|+|| +.|++.......   .+-.....
T Consensus       164 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~  242 (741)
T 1yr2_A          164 ALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYN  242 (741)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEEEESCCCEESTT-SEEEEEECCCC--------CCCC
T ss_pred             EEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCCCceeccEEEECC-CEEEEEEecCcccccccccCCCC
Confidence            57789999999999877654     4699999999987 21  1111235789999 666665422110   00001123


Q ss_pred             CcEEEEECCCCC--------------CCcEEEeCCC
Q 036317           83 GSVYAWSARSGK--------------EPPVIKWAPG  104 (106)
Q Consensus        83 ~~i~~wd~~~~~--------------~v~~i~~sp~  104 (106)
                      ..|++|++.+++              .+..+.|||+
T Consensus       243 ~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpD  278 (741)
T 1yr2_A          243 QTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSD  278 (741)
T ss_dssp             CEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTT
T ss_pred             CEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCC
Confidence            468889887664              2456677775

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=97.84  E-value=2.9e-05  Score=59.40  Aligned_cols=70  Identities=16%  Similarity=0.148  Sum_probs=49.6

Q ss_pred             CCeeEEEECCCCCeEEEEeC-----CCeEEEEEcCCCce-eccCCC--cEEEEEecCCcceeeeeeecccEEEEecCCC-
Q 036317           13 SDANEVKLSNDGRLMLLTTL-----EGHIHVLHSFQGTL-PVSHNS--TLEASFSQHLSLVALSVLILRSWVLEGSGDG-   83 (106)
Q Consensus        13 ~~v~~v~~spdg~~l~~~~~-----~~~i~l~d~~~~~~-~~~~~~--~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~-   83 (106)
                      ..+..++|||||++++-+..     ..+|+++|+.+++. ......  ...++|+ |+           +.|+.++.+. 
T Consensus       129 ~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~Ws-Dg-----------~~l~y~~~~~~  196 (693)
T 3iuj_A          129 TALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFSGISWL-GN-----------EGFFYSSYDKP  196 (693)
T ss_dssp             CEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEESCCCEEE-TT-----------TEEEEEESSCC
T ss_pred             EEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCceeccEEEe-CC-----------CEEEEEEecCc
Confidence            36888999999999885432     25799999999986 211111  2347899 99           7766666553 


Q ss_pred             ------------cEEEEECCCCC
Q 036317           84 ------------SVYAWSARSGK   94 (106)
Q Consensus        84 ------------~i~~wd~~~~~   94 (106)
                                  .|++|++.+++
T Consensus       197 ~~~~~~~~~~~~~v~~~~lgt~~  219 (693)
T 3iuj_A          197 DGSELSARTDQHKVYFHRLGTAQ  219 (693)
T ss_dssp             C-------CCCCEEEEEETTSCG
T ss_pred             ccccccccCCCcEEEEEECCCCc
Confidence                        49999987764

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=97.83  E-value=5e-05  Score=57.87  Aligned_cols=68  Identities=13%  Similarity=0.033  Sum_probs=50.2

Q ss_pred             eEEEECCCCCeEEEEeCCCe-------------EEEEEcCCCce------e--ccCCCcEEEEEecCCcceeeeeeeccc
Q 036317           16 NEVKLSNDGRLMLLTTLEGH-------------IHVLHSFQGTL------P--VSHNSTLEASFSQHLSLVALSVLILRS   74 (106)
Q Consensus        16 ~~v~~spdg~~l~~~~~~~~-------------i~l~d~~~~~~------~--~~~~~~~~~~fs~d~~~~~~~~~~~~~   74 (106)
                      ..++|+|||+.++.++.+..             |++|++.++..      .  .+......+.|||||           +
T Consensus       171 ~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG-----------~  239 (695)
T 2bkl_A          171 ATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDG-----------K  239 (695)
T ss_dssp             CCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTS-----------C
T ss_pred             cceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCC-----------C
Confidence            68999999999999988765             99999988762      1  122356789999999           7


Q ss_pred             EEEEecCCC----cEEEEECCCCC
Q 036317           75 WVLEGSGDG----SVYAWSARSGK   94 (106)
Q Consensus        75 ~i~t~s~d~----~i~~wd~~~~~   94 (106)
                      +|+..+.++    .|++|+..+++
T Consensus       240 ~l~~~~~~~~~~~~l~~~~~~~~~  263 (695)
T 2bkl_A          240 YLFVYILRGWSENDVYWKRPGEKD  263 (695)
T ss_dssp             CEEEEEEETTTEEEEEEECTTCSS
T ss_pred             EEEEEEeCCCCceEEEEEcCCCCc
Confidence            666665444    67777665544

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=97.82  E-value=0.00018  Score=50.14  Aligned_cols=68  Identities=4%  Similarity=0.022  Sum_probs=52.1

Q ss_pred             CeeEEEECCCCCeEEEEeCC----------CeEEEEEcCCCcee----cc-CCCcEEEEEecCCcceeeeeeecccEEEE
Q 036317           14 DANEVKLSNDGRLMLLTTLE----------GHIHVLHSFQGTLP----VS-HNSTLEASFSQHLSLVALSVLILRSWVLE   78 (106)
Q Consensus        14 ~v~~v~~spdg~~l~~~~~~----------~~i~l~d~~~~~~~----~~-~~~~~~~~fs~d~~~~~~~~~~~~~~i~t   78 (106)
                      ....+.++|+|+++++...+          +.+.++|..++++.    .. ...+..++|+||+           +++..
T Consensus       173 ~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~-----------~~lyv  241 (328)
T 3dsm_A          173 QPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTR-----------DTLYW  241 (328)
T ss_dssp             CBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTS-----------CEEEE
T ss_pred             CccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCC-----------CEEEE
Confidence            45688999999966665544          78999999988871    11 1256789999999           88777


Q ss_pred             ecCCCcEEEEECCCCC
Q 036317           79 GSGDGSVYAWSARSGK   94 (106)
Q Consensus        79 ~s~d~~i~~wd~~~~~   94 (106)
                      +..  .|++||.++++
T Consensus       242 ~~~--~v~~~d~~t~~  255 (328)
T 3dsm_A          242 INN--DIWRMPVEADR  255 (328)
T ss_dssp             ESS--SEEEEETTCSS
T ss_pred             Ecc--EEEEEECCCCc
Confidence            654  89999998876

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=97.76  E-value=0.00014  Score=55.10  Aligned_cols=71  Identities=11%  Similarity=0.071  Sum_probs=54.3

Q ss_pred             CCCCCeEEEEeCCCeEEEEEcCCCce--eccC-CCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEEECC--CCC-
Q 036317           21 SNDGRLMLLTTLEGHIHVLHSFQGTL--PVSH-NSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSAR--SGK-   94 (106)
Q Consensus        21 spdg~~l~~~~~~~~i~l~d~~~~~~--~~~~-~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd~~--~~~-   94 (106)
                      +|++..+++...++++.++|..++++  .... ..+..+.|||||           +++..++.|+.|.+||+.  +++ 
T Consensus       164 d~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~~p~~v~~SpDG-----------r~lyv~~~dg~V~viD~~~~t~~~  232 (567)
T 1qks_A          164 DLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASG-----------RYLFVIGRDGKVNMIDLWMKEPTT  232 (567)
T ss_dssp             CGGGEEEEEETTTTEEEEEETTTCCEEEEEECSSCEEEEEECTTS-----------CEEEEEETTSEEEEEETTSSSCCE
T ss_pred             CCCceEEEEeCCCCeEEEEECCCCeEEEEEeCCCCccceEECCCC-----------CEEEEEcCCCeEEEEECCCCCCcE
Confidence            35556666777889999999999987  1111 233468999999           999999999999999995  666 


Q ss_pred             --------CCcEEEeC
Q 036317           95 --------EPPVIKWA  102 (106)
Q Consensus        95 --------~v~~i~~s  102 (106)
                              ..+.+.|+
T Consensus       233 v~~i~~G~~P~~ia~s  248 (567)
T 1qks_A          233 VAEIKIGSEARSIETS  248 (567)
T ss_dssp             EEEEECCSEEEEEEEC
T ss_pred             eEEEecCCCCceeEEc
Confidence                    44667777

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=97.73  E-value=0.00018  Score=49.38  Aligned_cols=74  Identities=7%  Similarity=0.110  Sum_probs=58.5

Q ss_pred             CeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce---eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEEEC
Q 036317           14 DANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL---PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSA   90 (106)
Q Consensus        14 ~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~---~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd~   90 (106)
                      ....+.+.++|+++++...++.+..||.. |+.   ......+..+...++|           +.+++++.++.|..+|.
T Consensus       126 ~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~~~~~~~~~~~g-----------~~~v~~~~~~~v~~~d~  193 (276)
T 3no2_A          126 QFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLSGTPFSSAFLDNG-----------DCLVACGDAHCFVQLNL  193 (276)
T ss_dssp             SCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECSSCCCEEEECTTS-----------CEEEECBTTSEEEEECT
T ss_pred             cccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECCCCccceeEcCCC-----------CEEEEeCCCCeEEEEeC
Confidence            45566788999999998899999999997 877   2222345567788999           99999988889999999


Q ss_pred             CCCCCCcEE
Q 036317           91 RSGKEPPVI   99 (106)
Q Consensus        91 ~~~~~v~~i   99 (106)
                      ++|+.+..+
T Consensus       194 ~tG~~~w~~  202 (276)
T 3no2_A          194 ESNRIVRRV  202 (276)
T ss_dssp             TTCCEEEEE
T ss_pred             cCCcEEEEe
Confidence            999844433

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=97.70  E-value=0.00028  Score=49.09  Aligned_cols=70  Identities=16%  Similarity=0.173  Sum_probs=52.8

Q ss_pred             CeeEEEECCCCCeEEEEeCCCeEEEEEcCCCcee---c-c--CCCcEEEEEecC-CcceeeeeeecccEEEEe----cCC
Q 036317           14 DANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTLP---V-S--HNSTLEASFSQH-LSLVALSVLILRSWVLEG----SGD   82 (106)
Q Consensus        14 ~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~~---~-~--~~~~~~~~fs~d-~~~~~~~~~~~~~~i~t~----s~d   82 (106)
                      ..+.++|+||++++.++..  .+.++|..++++.   . .  ...+..++++|+ +           +..++.    ..+
T Consensus       226 ~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g-----------~lyva~~~~y~~~  292 (328)
T 3dsm_A          226 WPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNG-----------EVYVADAIDYQQQ  292 (328)
T ss_dssp             CCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTC-----------CEEEEECTTSSSE
T ss_pred             CceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCC-----------eEEEEcccccccC
Confidence            5789999999998887665  8999999888761   1 1  235667999994 5           555555    568


Q ss_pred             CcEEEEECCCCCCCc
Q 036317           83 GSVYAWSARSGKEPP   97 (106)
Q Consensus        83 ~~i~~wd~~~~~~v~   97 (106)
                      +.|.+||.+ |+.+.
T Consensus       293 ~~V~v~d~~-g~~~~  306 (328)
T 3dsm_A          293 GIVYRYSPQ-GKLID  306 (328)
T ss_dssp             EEEEEECTT-CCEEE
T ss_pred             CEEEEECCC-CCEEE
Confidence            899999998 87333

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=97.69  E-value=0.0005  Score=45.52  Aligned_cols=71  Identities=11%  Similarity=0.148  Sum_probs=55.9

Q ss_pred             CCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce---e-ccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEE
Q 036317           13 SDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL---P-VSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAW   88 (106)
Q Consensus        13 ~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~---~-~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~w   88 (106)
                      ..+..++++++|+.+++...++.+.+||......   . .....+..+.++++|           +..++...++.|+++
T Consensus       192 ~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g-----------~l~v~~~~~~~v~~~  260 (270)
T 1rwi_B          192 TAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDR-----------TVYVADRGNDRVVKL  260 (270)
T ss_dssp             CSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTC-----------CEEEEEGGGTEEEEE
T ss_pred             CCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCC-----------CEEEEECCCCEEEEE
Confidence            4688999999998667766788999999866544   1 122456789999999           988888899999999


Q ss_pred             ECCCCC
Q 036317           89 SARSGK   94 (106)
Q Consensus        89 d~~~~~   94 (106)
                      ++...+
T Consensus       261 ~~~~~~  266 (270)
T 1rwi_B          261 TSLEHH  266 (270)
T ss_dssp             CCCGGG
T ss_pred             cCCCcc
Confidence            987643

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=97.69  E-value=0.00081  Score=45.38  Aligned_cols=69  Identities=13%  Similarity=0.224  Sum_probs=53.8

Q ss_pred             CCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEE-EEecCCCcEEE
Q 036317           13 SDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWV-LEGSGDGSVYA   87 (106)
Q Consensus        13 ~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i-~t~s~d~~i~~   87 (106)
                      .....++++++|+.+++...++.|.+||..+++.    ......+..++|+|++           ++| ++...++.|..
T Consensus       226 ~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg-----------~~l~v~~~~~~~l~~  294 (314)
T 1pjx_A          226 GGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQT-----------KTIFVTEHENNAVWK  294 (314)
T ss_dssp             CEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTS-----------SEEEEEETTTTEEEE
T ss_pred             CCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCC-----------CEEEEEeCCCCeEEE
Confidence            4578899999999877777889999999886665    2233566789999999           844 55566789999


Q ss_pred             EECCC
Q 036317           88 WSARS   92 (106)
Q Consensus        88 wd~~~   92 (106)
                      ++++.
T Consensus       295 ~~~~~  299 (314)
T 1pjx_A          295 FEWQR  299 (314)
T ss_dssp             EECSS
T ss_pred             EeCCC
Confidence            99875

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=97.69  E-value=0.0017  Score=43.27  Aligned_cols=75  Identities=11%  Similarity=0.020  Sum_probs=53.7

Q ss_pred             eeecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce-----eccCCCcEEEEEecCCcceeeeeeecccEEEEe
Q 036317            5 IFSDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL-----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEG   79 (106)
Q Consensus         5 ~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~-----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~   79 (106)
                      .+.+......+..++++++|+.+++...++.+..+|.. ++.     +.....+..+.+++++           +..++.
T Consensus        54 ~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g-----------~l~v~~  121 (300)
T 2qc5_A           54 EFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNG-----------DIWFTQ  121 (300)
T ss_dssp             EEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTT-----------CEEEEE
T ss_pred             EEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCC-----------CEEEEc
Confidence            34443334578999999999977776667889999987 655     1122456678899999           777776


Q ss_pred             cCCCcEEEEECC
Q 036317           80 SGDGSVYAWSAR   91 (106)
Q Consensus        80 s~d~~i~~wd~~   91 (106)
                      ..++.|..+|.+
T Consensus       122 ~~~~~i~~~~~~  133 (300)
T 2qc5_A          122 LNGDRIGKLTAD  133 (300)
T ss_dssp             TTTTEEEEECTT
T ss_pred             cCCCeEEEECCC
Confidence            666778888766

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=97.67  E-value=0.00026  Score=51.00  Aligned_cols=65  Identities=14%  Similarity=0.096  Sum_probs=49.7

Q ss_pred             EEECCCCCeEEEEeC---------CCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccE-EEEec-CC
Q 036317           18 VKLSNDGRLMLLTTL---------EGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSW-VLEGS-GD   82 (106)
Q Consensus        18 v~~spdg~~l~~~~~---------~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~-i~t~s-~d   82 (106)
                      ++++|||+++.++..         ++.+.++|..+++.    +... .+..+.|+|||           ++ +++.. .+
T Consensus       269 v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg-----------~~l~va~~~~~  336 (368)
T 1mda_H          269 VAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDG-----------ASDNYANSAGT  336 (368)
T ss_dssp             EEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSS-----------SCEEEEEETTT
T ss_pred             eEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCC-----------CEEEEEccCCC
Confidence            789999998887643         24677999999887    1111 35679999999           74 45555 58


Q ss_pred             CcEEEEECCCCC
Q 036317           83 GSVYAWSARSGK   94 (106)
Q Consensus        83 ~~i~~wd~~~~~   94 (106)
                      ++|.++|+++++
T Consensus       337 ~~VsVID~~t~k  348 (368)
T 1mda_H          337 EVLDIYDAASDQ  348 (368)
T ss_dssp             TEEEEEESSSCE
T ss_pred             CeEEEEECCCCc
Confidence            999999999988

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=97.57  E-value=0.00015  Score=53.30  Aligned_cols=70  Identities=7%  Similarity=-0.068  Sum_probs=54.6

Q ss_pred             EEEECCCCCeEEEEe----------CCCeEEEEEcCCCce----ecc-------CCCcEEEEEecCCcceeeeeeecccE
Q 036317           17 EVKLSNDGRLMLLTT----------LEGHIHVLHSFQGTL----PVS-------HNSTLEASFSQHLSLVALSVLILRSW   75 (106)
Q Consensus        17 ~v~~spdg~~l~~~~----------~~~~i~l~d~~~~~~----~~~-------~~~~~~~~fs~d~~~~~~~~~~~~~~   75 (106)
                      .+++||||++++++.          .++.|.++|..+++.    ...       ...+..+.|+|||           ++
T Consensus       122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDG-----------k~  190 (426)
T 3c75_H          122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDN-----------KN  190 (426)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTS-----------SE
T ss_pred             ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCC-----------CE
Confidence            899999999998876          367899999999887    111       1234468999999           88


Q ss_pred             EEEecC--CCcEEEEECCCCCCCc
Q 036317           76 VLEGSG--DGSVYAWSARSGKEPP   97 (106)
Q Consensus        76 i~t~s~--d~~i~~wd~~~~~~v~   97 (106)
                      +..++.  +++|.+.|+++++.+.
T Consensus       191 lyV~n~~~~~~VsVID~~t~kvv~  214 (426)
T 3c75_H          191 LLFYQFSPAPAVGVVDLEGKTFDR  214 (426)
T ss_dssp             EEEEECSSSCEEEEEETTTTEEEE
T ss_pred             EEEEecCCCCeEEEEECCCCeEEE
Confidence            887764  5789999999988433

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=97.56  E-value=0.00078  Score=46.11  Aligned_cols=80  Identities=9%  Similarity=0.113  Sum_probs=55.1

Q ss_pred             eecCCCC-CCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----ecc-CCCcEEEEEecCCcceeeeeeecccEEEEe
Q 036317            6 FSDGGDV-SDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVS-HNSTLEASFSQHLSLVALSVLILRSWVLEG   79 (106)
Q Consensus         6 ~~~~~~~-~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~-~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~   79 (106)
                      |++..+. ..+.++.++|+|+.++  +.++.+..+|. +|+.    ... ...+..+.+.+||           +++++.
T Consensus        29 w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG-----------~~lv~~   94 (276)
T 3no2_A           29 WEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQTARILPDG-----------NALVAW   94 (276)
T ss_dssp             EEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEEEEEECTTS-----------CEEEEE
T ss_pred             EEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccccccEECCCC-----------CEEEEe
Confidence            4443333 3689999999999777  46788999999 7876    212 1234568899999           888887


Q ss_pred             cC-CCcEEEEECCCCCCCcEEE
Q 036317           80 SG-DGSVYAWSARSGKEPPVIK  100 (106)
Q Consensus        80 s~-d~~i~~wd~~~~~~v~~i~  100 (106)
                      +. ++.+..+|. +|+.+..+.
T Consensus        95 ~~~~~~v~~vd~-~Gk~l~~~~  115 (276)
T 3no2_A           95 CGHPSTILEVNM-KGEVLSKTE  115 (276)
T ss_dssp             ESTTEEEEEECT-TSCEEEEEE
T ss_pred             cCCCCEEEEEeC-CCCEEEEEe
Confidence            76 667777665 566444433

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=97.52  E-value=0.00036  Score=50.71  Aligned_cols=65  Identities=9%  Similarity=-0.001  Sum_probs=50.2

Q ss_pred             CCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCceeccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEEECCC
Q 036317           13 SDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTLPVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSARS   92 (106)
Q Consensus        13 ~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd~~~   92 (106)
                      ..+.++.+.+..  +++++.+|++.+||+.++........+.+++|||+|           ..  .|..||++++|+...
T Consensus       127 ~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~~~~~~~~Vs~v~WSpkG-----------~~--vg~~dg~i~~~~~~~  191 (388)
T 1xip_A          127 KPVFQLKNVNNT--LVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQ-----------LA--VLLKDRSFQSFAWRN  191 (388)
T ss_dssp             SCEEEEEECSSE--EEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSE-----------EE--EEETTSCEEEEEEET
T ss_pred             cceeeEEecCCC--EEEEECCCCEEEEEccCCccccccCCceEEEEcCCc-----------eE--EEEcCCcEEEEcCCC
Confidence            357777776553  888899999999999887763344467789999999           54  477789999996654

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=97.52  E-value=0.0016  Score=44.52  Aligned_cols=69  Identities=12%  Similarity=0.033  Sum_probs=51.1

Q ss_pred             CCeeEEEECCCCCeE-EEEeCCCeEEEEEcCCCce---eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEE
Q 036317           13 SDANEVKLSNDGRLM-LLTTLEGHIHVLHSFQGTL---PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAW   88 (106)
Q Consensus        13 ~~v~~v~~spdg~~l-~~~~~~~~i~l~d~~~~~~---~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~w   88 (106)
                      .......|+|+|+.+ .+...++.+..|+. +++.   ......+..+.++++|           +.+++...++.|.+|
T Consensus        45 ~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~~~~~~~~~~~~gl~~d~dG-----------~l~v~~~~~~~v~~~  112 (305)
T 3dr2_A           45 TWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTVDVLLDATAFTNGNAVDAQQ-----------RLVHCEHGRRAITRS  112 (305)
T ss_dssp             SSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCEEEEEESCSCEEEEEECTTS-----------CEEEEETTTTEEEEE
T ss_pred             cCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCEEEEeCCCCccceeeECCCC-----------CEEEEECCCCEEEEE
Confidence            466789999999954 55567789999998 5554   2334456779999999           877766666788888


Q ss_pred             ECCCCC
Q 036317           89 SARSGK   94 (106)
Q Consensus        89 d~~~~~   94 (106)
                      +.+ |+
T Consensus       113 ~~~-g~  117 (305)
T 3dr2_A          113 DAD-GQ  117 (305)
T ss_dssp             CTT-SC
T ss_pred             CCC-CC
Confidence            875 44

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=97.48  E-value=0.00021  Score=52.49  Aligned_cols=72  Identities=15%  Similarity=0.166  Sum_probs=55.1

Q ss_pred             EEEECCCCCeEEEEeC----------CCeEEEEEcCCCcee--cc-CCCcEEEEEecCCcceeeeeeeccc-EEEEec-C
Q 036317           17 EVKLSNDGRLMLLTTL----------EGHIHVLHSFQGTLP--VS-HNSTLEASFSQHLSLVALSVLILRS-WVLEGS-G   81 (106)
Q Consensus        17 ~v~~spdg~~l~~~~~----------~~~i~l~d~~~~~~~--~~-~~~~~~~~fs~d~~~~~~~~~~~~~-~i~t~s-~   81 (106)
                      .++++|||+++.++..          ++++.++|..+.+..  -. ...+..+.|+||+           + .+++.. .
T Consensus       323 ~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~~P~gia~spDg-----------~~~lyv~n~~  391 (426)
T 3c75_H          323 QTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGHEIDSINVSQDA-----------EPLLYALSAG  391 (426)
T ss_dssp             CEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSS-----------SCEEEEEETT
T ss_pred             eeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCCCcCeEEEccCC-----------CEEEEEEcCC
Confidence            3789999998877653          357999999999871  11 1135679999999           8 777777 5


Q ss_pred             CCcEEEEECCCCCCCcEE
Q 036317           82 DGSVYAWSARSGKEPPVI   99 (106)
Q Consensus        82 d~~i~~wd~~~~~~v~~i   99 (106)
                      +++|.++|+.+++.+..|
T Consensus       392 s~~VsVID~~t~kvv~tI  409 (426)
T 3c75_H          392 TQTLHIYDAATGEELRSV  409 (426)
T ss_dssp             TTEEEEEETTTCCEEEEE
T ss_pred             CCeEEEEECCCCCEEEEe
Confidence            899999999999855554

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=97.43  E-value=0.00061  Score=49.51  Aligned_cols=72  Identities=19%  Similarity=0.157  Sum_probs=53.4

Q ss_pred             CeeEEEECCCCCeEEEEeC----------CCeEEEEEcCCCceec---cCCCcEEEEEecCCcceeeeeeeccc-EEEEe
Q 036317           14 DANEVKLSNDGRLMLLTTL----------EGHIHVLHSFQGTLPV---SHNSTLEASFSQHLSLVALSVLILRS-WVLEG   79 (106)
Q Consensus        14 ~v~~v~~spdg~~l~~~~~----------~~~i~l~d~~~~~~~~---~~~~~~~~~fs~d~~~~~~~~~~~~~-~i~t~   79 (106)
                      ....++++|+++.+.+...          .++|.++|..++++..   -...+..+.+++|+           + .+++.
T Consensus       281 g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~~~~~lavs~D~-----------~~~ly~t  349 (386)
T 3sjl_D          281 GWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDE-----------KPLLYAL  349 (386)
T ss_dssp             SSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECSSS-----------SCEEEEE
T ss_pred             CcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCCCcceEEECCCC-----------CeEEEEE
Confidence            3445888999998887753          2579999999998811   11244579999999           7 55554


Q ss_pred             -cCCCcEEEEECCCCCCC
Q 036317           80 -SGDGSVYAWSARSGKEP   96 (106)
Q Consensus        80 -s~d~~i~~wd~~~~~~v   96 (106)
                       ..+++|.++|..+++.+
T Consensus       350 n~~~~~VsViD~~t~k~~  367 (386)
T 3sjl_D          350 STGDKTLYIHDAESGEEL  367 (386)
T ss_dssp             ETTTTEEEEEETTTCCEE
T ss_pred             cCCCCeEEEEECCCCcEE
Confidence             55889999999999933

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=97.41  E-value=0.0012  Score=44.52  Aligned_cols=80  Identities=11%  Similarity=0.258  Sum_probs=58.0

Q ss_pred             CeeEEEEC----CCCCeEEEE-eCCCeEEEEEcC-CCce---------eccC-CCcEEEEEecCCcceeeeeeecccEEE
Q 036317           14 DANEVKLS----NDGRLMLLT-TLEGHIHVLHSF-QGTL---------PVSH-NSTLEASFSQHLSLVALSVLILRSWVL   77 (106)
Q Consensus        14 ~v~~v~~s----pdg~~l~~~-~~~~~i~l~d~~-~~~~---------~~~~-~~~~~~~fs~d~~~~~~~~~~~~~~i~   77 (106)
                      ..+.++++    |||+.+.++ ..++.+.+||.. +++.         .... ..+..++++++|           +..+
T Consensus       173 ~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G-----------~l~v  241 (314)
T 1pjx_A          173 FPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDN-----------NLLV  241 (314)
T ss_dssp             SEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTC-----------CEEE
T ss_pred             CcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCC-----------CEEE
Confidence            45788999    999766555 567899999976 4542         1111 345678999999           8888


Q ss_pred             EecCCCcEEEEECCCCC----------CCcEEEeCCC
Q 036317           78 EGSGDGSVYAWSARSGK----------EPPVIKWAPG  104 (106)
Q Consensus        78 t~s~d~~i~~wd~~~~~----------~v~~i~~sp~  104 (106)
                      +...++.|.+||.++++          .+.++.|+|+
T Consensus       242 ~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~d  278 (314)
T 1pjx_A          242 ANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQ  278 (314)
T ss_dssp             EEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTT
T ss_pred             EEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCC
Confidence            87778899999998666          4566666664

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=97.38  E-value=0.0006  Score=52.32  Aligned_cols=66  Identities=14%  Similarity=0.125  Sum_probs=48.0

Q ss_pred             eEEEECCCCCeEEEEeCCCe--------------EEEEEcCCCce------ec--cCCCcEEEEEecCCcceeeeeeecc
Q 036317           16 NEVKLSNDGRLMLLTTLEGH--------------IHVLHSFQGTL------PV--SHNSTLEASFSQHLSLVALSVLILR   73 (106)
Q Consensus        16 ~~v~~spdg~~l~~~~~~~~--------------i~l~d~~~~~~------~~--~~~~~~~~~fs~d~~~~~~~~~~~~   73 (106)
                      ..++|+|| +.++.+..+..              +++|++.++..      ..  +......+.|||||           
T Consensus       212 ~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG-----------  279 (741)
T 1yr2_A          212 SGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDG-----------  279 (741)
T ss_dssp             CCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTS-----------
T ss_pred             ccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCC-----------
Confidence            57889999 98988876543              88999877652      11  11246689999999           


Q ss_pred             cEEEEecCC-----CcEEEEECCCC
Q 036317           74 SWVLEGSGD-----GSVYAWSARSG   93 (106)
Q Consensus        74 ~~i~t~s~d-----~~i~~wd~~~~   93 (106)
                      ++|+..+.+     ..|++||+.++
T Consensus       280 ~~l~~~~~~~~~~~~~l~~~d~~~~  304 (741)
T 1yr2_A          280 RWVVITSSEGTDPVNTVHVARVTNG  304 (741)
T ss_dssp             CEEEEEEECTTCSCCEEEEEEEETT
T ss_pred             CEEEEEEEccCCCcceEEEEECCCC
Confidence            777666543     38999999876

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=97.34  E-value=0.00027  Score=50.22  Aligned_cols=63  Identities=19%  Similarity=0.409  Sum_probs=40.6

Q ss_pred             CCCeEEEEeCCCeEEEEEcCCCce--eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEEECCCCCCC
Q 036317           23 DGRLMLLTTLEGHIHVLHSFQGTL--PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSARSGKEP   96 (106)
Q Consensus        23 dg~~l~~~~~~~~i~l~d~~~~~~--~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd~~~~~~v   96 (106)
                      ++..+++++.++.++.||..+|+.  ....+.+....+..++           +.+++++.|+.++.||.++|+.+
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~~~~~s~p~~~~g-----------~~~v~~s~dg~l~a~d~~tG~~~   72 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKEDPVLQVPTHVEE-----------PAFLPDPNDGSLYTLGSKNNEGL   72 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEECCCSCCCC----------------CCEEECTTTCCEEEC-----CCS
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecCCCceecceEcCC-----------CEEEEeCCCCEEEEEECCCCcee
Confidence            577799999999999999999988  2111334334445677           77888889999999999998844

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=97.28  E-value=0.0035  Score=42.71  Aligned_cols=68  Identities=7%  Similarity=0.012  Sum_probs=49.7

Q ss_pred             CeeEEEECCCCCeE-EEEeCCCeEEEEEcCCCce--eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEEEC
Q 036317           14 DANEVKLSNDGRLM-LLTTLEGHIHVLHSFQGTL--PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSA   90 (106)
Q Consensus        14 ~v~~v~~spdg~~l-~~~~~~~~i~l~d~~~~~~--~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd~   90 (106)
                      --....|+|+++.+ .+...++.|+.||..+++.  ......+..+.++++|           +++++.  +..|.+||.
T Consensus        14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~dG-----------~l~v~~--~~~l~~~d~   80 (297)
T 3g4e_A           14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQRVTMDAPVSSVALRQSG-----------GYVATI--GTKFCALNW   80 (297)
T ss_dssp             BEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECSSCEEEEEEBTTS-----------SEEEEE--TTEEEEEET
T ss_pred             cccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEEEeCCCceEEEEECCCC-----------CEEEEE--CCeEEEEEC
Confidence            45688999965544 5556789999999988776  2233456779999999           755554  457888988


Q ss_pred             CCCC
Q 036317           91 RSGK   94 (106)
Q Consensus        91 ~~~~   94 (106)
                      ++++
T Consensus        81 ~~g~   84 (297)
T 3g4e_A           81 KEQS   84 (297)
T ss_dssp             TTTE
T ss_pred             CCCc
Confidence            8765

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=97.23  E-value=0.0048  Score=42.72  Aligned_cols=79  Identities=14%  Similarity=0.098  Sum_probs=55.3

Q ss_pred             CeeEEEECCCCCeEEEE-eCCCeEEEEEcC--CC-ce------ec---cCCCcEEEEEecCCcceeeeeeecccEEEEec
Q 036317           14 DANEVKLSNDGRLMLLT-TLEGHIHVLHSF--QG-TL------PV---SHNSTLEASFSQHLSLVALSVLILRSWVLEGS   80 (106)
Q Consensus        14 ~v~~v~~spdg~~l~~~-~~~~~i~l~d~~--~~-~~------~~---~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s   80 (106)
                      ..+.++|+|||+.++.+ ..++.|.+||..  ++ ++      ..   ....+..+.++++|           ...++..
T Consensus       180 ~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G-----------~lwva~~  248 (326)
T 2ghs_A          180 IPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEG-----------HIWNARW  248 (326)
T ss_dssp             SEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTS-----------CEEEEEE
T ss_pred             ccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCC-----------CEEEEEe
Confidence            45789999999977555 457899999975  66 43      11   12334568889999           7766665


Q ss_pred             CCCcEEEEECCCCC----------CCcEEEeC-CC
Q 036317           81 GDGSVYAWSARSGK----------EPPVIKWA-PG  104 (106)
Q Consensus        81 ~d~~i~~wd~~~~~----------~v~~i~~s-p~  104 (106)
                      .++.|.+||. +++          .+.+++|+ |+
T Consensus       249 ~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~g~d  282 (326)
T 2ghs_A          249 GEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPD  282 (326)
T ss_dssp             TTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTT
T ss_pred             CCCEEEEECC-CCCEEEEEECCCCCcEEEEEecCC
Confidence            6678999988 455          46677776 54

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=97.21  E-value=0.0015  Score=45.65  Aligned_cols=80  Identities=8%  Similarity=0.066  Sum_probs=55.1

Q ss_pred             CeeEEEECCCCCeEEEEeCCC-eEEEEEcC---CCce-----------eccCCCcEEEEEecCCcceeeeeeecccEEEE
Q 036317           14 DANEVKLSNDGRLMLLTTLEG-HIHVLHSF---QGTL-----------PVSHNSTLEASFSQHLSLVALSVLILRSWVLE   78 (106)
Q Consensus        14 ~v~~v~~spdg~~l~~~~~~~-~i~l~d~~---~~~~-----------~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t   78 (106)
                      .++.++|||||+.|+.+...+ .+..++..   .+..           ....+.+..++++++|           ...++
T Consensus       196 ~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G-----------~l~va  264 (343)
T 2qe8_A          196 GVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDH-----------NIYVG  264 (343)
T ss_dssp             CEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTC-----------CEEEE
T ss_pred             ccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCC-----------CEEEE
Confidence            368999999999888776554 55555532   1111           1122344568999999           98888


Q ss_pred             ecCCCcEEEEECCCCC-----------CCcEEEeCCC
Q 036317           79 GSGDGSVYAWSARSGK-----------EPPVIKWAPG  104 (106)
Q Consensus        79 ~s~d~~i~~wd~~~~~-----------~v~~i~~sp~  104 (106)
                      ...++.|.+||.++|+           .+..++|+|+
T Consensus       265 ~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~  301 (343)
T 2qe8_A          265 DLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSD  301 (343)
T ss_dssp             EGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTT
T ss_pred             ccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCC
Confidence            8889999999986665           3556677653

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=97.19  E-value=0.0041  Score=43.10  Aligned_cols=68  Identities=12%  Similarity=0.100  Sum_probs=49.4

Q ss_pred             CeeEEEECCCCCeE-EEEeCCCeEEEEEcCCCcee--ccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEEEC
Q 036317           14 DANEVKLSNDGRLM-LLTTLEGHIHVLHSFQGTLP--VSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSA   90 (106)
Q Consensus        14 ~v~~v~~spdg~~l-~~~~~~~~i~l~d~~~~~~~--~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd~   90 (106)
                      -.....|+|+++.+ .+...++.|+.||..+++..  .....+..+.++++|           +++++. .+ .|++||.
T Consensus        50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~~~~v~~i~~~~dg-----------~l~v~~-~~-gl~~~d~  116 (326)
T 2ghs_A           50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKTVHALPFMGSALAKISDS-----------KQLIAS-DD-GLFLRDT  116 (326)
T ss_dssp             BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEECSSCEEEEEEEETT-----------EEEEEE-TT-EEEEEET
T ss_pred             CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEEEECCCcceEEEEeCCC-----------eEEEEE-CC-CEEEEEC
Confidence            35688999985544 55567889999999887762  223456678899999           776665 33 4899998


Q ss_pred             CCCC
Q 036317           91 RSGK   94 (106)
Q Consensus        91 ~~~~   94 (106)
                      ++++
T Consensus       117 ~~g~  120 (326)
T 2ghs_A          117 ATGV  120 (326)
T ss_dssp             TTCC
T ss_pred             CCCc
Confidence            8776

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=97.17  E-value=0.006  Score=41.60  Aligned_cols=80  Identities=16%  Similarity=0.131  Sum_probs=54.3

Q ss_pred             CCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCcee----c----cCCCcEEEEEecCCcceeeeeeecccEEEE----ec
Q 036317           13 SDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTLP----V----SHNSTLEASFSQHLSLVALSVLILRSWVLE----GS   80 (106)
Q Consensus        13 ~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~~----~----~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t----~s   80 (106)
                      ..++.++++++|+.+++...++.|.++|.. ++..    .    ....+..+.++++|           +..+|    |.
T Consensus        86 ~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG-----------~l~~td~~~g~  153 (305)
T 3dr2_A           86 AFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDG-----------AIWFTDPPFGL  153 (305)
T ss_dssp             SCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTS-----------CEEEECCSGGG
T ss_pred             CccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCC-----------CEEEeCcCCCc
Confidence            468899999999966665566889999975 5541    1    12234568999999           76665    32


Q ss_pred             C-------------CCcEEEEECCCCC--------CCcEEEeCCC
Q 036317           81 G-------------DGSVYAWSARSGK--------EPPVIKWAPG  104 (106)
Q Consensus        81 ~-------------d~~i~~wd~~~~~--------~v~~i~~sp~  104 (106)
                      .             .+.|+.+|.++++        .++.++|+|+
T Consensus       154 ~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~p~gl~~spd  198 (305)
T 3dr2_A          154 RKPSQGCPADPELAHHSVYRLPPDGSPLQRMADLDHPNGLAFSPD  198 (305)
T ss_dssp             SCGGGSCCCCCSSSCEEEEEECSSSCCCEEEEEESSEEEEEECTT
T ss_pred             cccccccccccccCCCeEEEEcCCCCcEEEEecCCCCcceEEcCC
Confidence            1             2467777776665        2456777775

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=97.16  E-value=0.0012  Score=51.08  Aligned_cols=70  Identities=13%  Similarity=0.037  Sum_probs=45.1

Q ss_pred             CeeEEEEC-CCCCeEEEEeCC-----CeEEEEEcCCC-ce-ecc-CCCcEEEEEecCCcceeeeeeecccEEEEecCC--
Q 036317           14 DANEVKLS-NDGRLMLLTTLE-----GHIHVLHSFQG-TL-PVS-HNSTLEASFSQHLSLVALSVLILRSWVLEGSGD--   82 (106)
Q Consensus        14 ~v~~v~~s-pdg~~l~~~~~~-----~~i~l~d~~~~-~~-~~~-~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d--   82 (106)
                      .+...+|| |||++++.+...     .+++++|+.++ +. ... ......+.|+|||           +.|+..+.+  
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~~~~~~~WspDg-----------~~l~y~~~d~~  243 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSGTNGEIVWGPDH-----------TSLFYVTKDET  243 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEEECSCCEECSST-----------TEEEEEEECTT
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccCceeeEEEecCC-----------CEEEEEEECCC
Confidence            57789999 999988865432     25999999988 64 110 1112347899999           444444332  


Q ss_pred             ---CcEEEEECCCCC
Q 036317           83 ---GSVYAWSARSGK   94 (106)
Q Consensus        83 ---~~i~~wd~~~~~   94 (106)
                         ..|+.+++.+++
T Consensus       244 ~~~~~v~~~~lgt~~  258 (751)
T 2xe4_A          244 LRENKVWRHVMGKLQ  258 (751)
T ss_dssp             CCEEEEEEEETTSCG
T ss_pred             CCCCEEEEEECCCCc
Confidence               256777776553

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=97.11  E-value=0.00035  Score=50.32  Aligned_cols=65  Identities=8%  Similarity=-0.122  Sum_probs=47.3

Q ss_pred             EEEECCCCCeEEEEe----------CCCeEEEEEcCCCce----ecc--C-----CCcEEEEEecCCcceeeeeeecccE
Q 036317           17 EVKLSNDGRLMLLTT----------LEGHIHVLHSFQGTL----PVS--H-----NSTLEASFSQHLSLVALSVLILRSW   75 (106)
Q Consensus        17 ~v~~spdg~~l~~~~----------~~~~i~l~d~~~~~~----~~~--~-----~~~~~~~fs~d~~~~~~~~~~~~~~   75 (106)
                      .+.+||||+++.++.          .++.+.++|..+++.    +..  .     ..+..+.|+|||           ++
T Consensus        69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDG-----------k~  137 (368)
T 1mda_H           69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASS-----------AC  137 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTS-----------SC
T ss_pred             ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCC-----------CE
Confidence            799999999998886          368899999999987    111  0     234468999999           66


Q ss_pred             EEEecC--CCcEEE--EECCC
Q 036317           76 VLEGSG--DGSVYA--WSARS   92 (106)
Q Consensus        76 i~t~s~--d~~i~~--wd~~~   92 (106)
                      ++.+..  +..+.+  +|+++
T Consensus       138 lyVan~~~~~~v~V~~iD~~t  158 (368)
T 1mda_H          138 LLFFLFGSSAAAGLSVPGASD  158 (368)
T ss_dssp             EEEEECSSSCEEEEEETTTEE
T ss_pred             EEEEccCCCCeEEEEEEchhh
Confidence            665543  345666  77654

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=97.03  E-value=0.0036  Score=45.10  Aligned_cols=69  Identities=9%  Similarity=0.133  Sum_probs=52.2

Q ss_pred             CCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce---eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCC--cEEE
Q 036317           13 SDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL---PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDG--SVYA   87 (106)
Q Consensus        13 ~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~---~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~--~i~~   87 (106)
                      .....++|+|+|+.+++...++.|+.||..++++   ........ ++|++++           +.++.++.++  .|++
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g-----------~~l~~~d~~~~~~I~~  198 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK-PAVTKDK-----------QRVYSIGWEGTHTVYV  198 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCB-CEECTTS-----------SEEEEEBSSTTCEEEE
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCc-eeEecCC-----------CcEEEEecCCCceEEE
Confidence            3678999999999777777789999999988877   11222233 8899999           8888877755  7888


Q ss_pred             EECCCC
Q 036317           88 WSARSG   93 (106)
Q Consensus        88 wd~~~~   93 (106)
                      ++...+
T Consensus       199 ~d~~~~  204 (409)
T 3hrp_A          199 YMKASG  204 (409)
T ss_dssp             EEGGGT
T ss_pred             EEcCCC
Confidence            876543

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=96.99  E-value=0.0078  Score=41.87  Aligned_cols=72  Identities=8%  Similarity=0.082  Sum_probs=50.8

Q ss_pred             CCeeEEEECCCCCeEEEEeC-----CCeEEEEEcCCCce----ec------cCCCcEEEEEecCCcceeeeeeecccEEE
Q 036317           13 SDANEVKLSNDGRLMLLTTL-----EGHIHVLHSFQGTL----PV------SHNSTLEASFSQHLSLVALSVLILRSWVL   77 (106)
Q Consensus        13 ~~v~~v~~spdg~~l~~~~~-----~~~i~l~d~~~~~~----~~------~~~~~~~~~fs~d~~~~~~~~~~~~~~i~   77 (106)
                      ..+..++++++|+.+++-..     ++.+.+||..++++    ..      ....+..+++++++          ....+
T Consensus        67 ~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~----------g~~yv  136 (343)
T 2qe8_A           67 DTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIH----------NFVYI  136 (343)
T ss_dssp             SCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTT----------TEEEE
T ss_pred             eEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCC----------CEEEE
Confidence            47899999999986665443     57899999998885    11      11234678999865          03335


Q ss_pred             Eec---CCCcEEEEECCCCC
Q 036317           78 EGS---GDGSVYAWSARSGK   94 (106)
Q Consensus        78 t~s---~d~~i~~wd~~~~~   94 (106)
                      +-.   .++.|.+||+++++
T Consensus       137 td~~~~~~~~i~v~d~~~g~  156 (343)
T 2qe8_A          137 SDPAPDDKAALIRVDLQTGL  156 (343)
T ss_dssp             EECCSGGGCEEEEEETTTCC
T ss_pred             EcCccCCCCeEEEEECCCCC
Confidence            544   57799999998765

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=96.98  E-value=0.0016  Score=50.06  Aligned_cols=55  Identities=15%  Similarity=0.190  Sum_probs=40.8

Q ss_pred             CeEEEEEcCCCce--e-ccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEEECCCCCCCcEE
Q 036317           34 GHIHVLHSFQGTL--P-VSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSARSGKEPPVI   99 (106)
Q Consensus        34 ~~i~l~d~~~~~~--~-~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd~~~~~~v~~i   99 (106)
                      +.+..||..+++.  . ..........++.++           ..++.++.|+.+++||+++|+.+..+
T Consensus       457 g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~~g-----------~~v~~g~~dg~l~a~D~~tG~~lw~~  514 (677)
T 1kb0_A          457 GRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAG-----------NVVFQGTADGRLVAYHAATGEKLWEA  514 (677)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEETT-----------TEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             cEEEEEeCCCCcEEeecCCCCCCcCcceEeCC-----------CEEEEECCCCcEEEEECCCCceeeee
Confidence            6799999999987  2 122223344567777           78888999999999999999954444

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=96.79  E-value=0.01  Score=44.15  Aligned_cols=68  Identities=12%  Similarity=0.128  Sum_probs=49.5

Q ss_pred             eeEEEECCCCCeEEEEeCC------CeEEEEEcCCCce----e-c--cCCCcEEEEEecCCcceeeeeeecccEEEEec-
Q 036317           15 ANEVKLSNDGRLMLLTTLE------GHIHVLHSFQGTL----P-V--SHNSTLEASFSQHLSLVALSVLILRSWVLEGS-   80 (106)
Q Consensus        15 v~~v~~spdg~~l~~~~~~------~~i~l~d~~~~~~----~-~--~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s-   80 (106)
                      -..+..+||| .++++..+      +.+.++|..++++    + .  .......+-|+|++           +.+++.. 
T Consensus       140 Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~-----------~~mvsS~w  207 (462)
T 2ece_A          140 LHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPN-----------EVLVSSEW  207 (462)
T ss_dssp             EEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTT-----------TEEEECBC
T ss_pred             ccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCC-----------CEEEEccC
Confidence            3456788999 56655554      7899999999987    1 1  11223458889999           8777774 


Q ss_pred             ------------------CCCcEEEEECCCCC
Q 036317           81 ------------------GDGSVYAWSARSGK   94 (106)
Q Consensus        81 ------------------~d~~i~~wd~~~~~   94 (106)
                                        .+.+|.+||+.+++
T Consensus       208 g~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k  239 (462)
T 2ece_A          208 AVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRK  239 (462)
T ss_dssp             CCHHHHTTCCCTTTHHHHSCCEEEEEETTTTE
T ss_pred             cCccccccccchhhhhhccCCEEEEEECCCCc
Confidence                              46799999999876

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=96.78  E-value=0.0036  Score=47.88  Aligned_cols=68  Identities=13%  Similarity=0.135  Sum_probs=52.2

Q ss_pred             CeeEEEECCCCCeEEEEe-CCCeEEEEEcCCCc------e--------ecc-CCCcEEEEEecCCcceeeeeeecccEEE
Q 036317           14 DANEVKLSNDGRLMLLTT-LEGHIHVLHSFQGT------L--------PVS-HNSTLEASFSQHLSLVALSVLILRSWVL   77 (106)
Q Consensus        14 ~v~~v~~spdg~~l~~~~-~~~~i~l~d~~~~~------~--------~~~-~~~~~~~~fs~d~~~~~~~~~~~~~~i~   77 (106)
                      ....+.+||||+++++++ .+.++.++|..+.+      +        ... -..+....|+|||           .-.+
T Consensus       278 ~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG-----------~aY~  346 (595)
T 1fwx_A          278 NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRG-----------NAYT  346 (595)
T ss_dssp             SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEECTTS-----------EEEE
T ss_pred             CceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcceEEECCCC-----------eEEE
Confidence            456899999999998776 67899999998652      1        111 1245678999999           7666


Q ss_pred             EecCCCcEEEEECCC
Q 036317           78 EGSGDGSVYAWSARS   92 (106)
Q Consensus        78 t~s~d~~i~~wd~~~   92 (106)
                      +.-.|++|.+||+++
T Consensus       347 t~~ldsqV~kwdi~~  361 (595)
T 1fwx_A          347 SLFLDSQVVKWNIED  361 (595)
T ss_dssp             EETTTTEEEEEEHHH
T ss_pred             EEecCCcEEEEEhhH
Confidence            777789999999987

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=96.75  E-value=0.032  Score=38.45  Aligned_cols=77  Identities=6%  Similarity=-0.027  Sum_probs=49.5

Q ss_pred             CeeEEEECCCCCeEEEEeC--CCeEEEEEcCCCcee----c-cCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEE
Q 036317           14 DANEVKLSNDGRLMLLTTL--EGHIHVLHSFQGTLP----V-SHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVY   86 (106)
Q Consensus        14 ~v~~v~~spdg~~l~~~~~--~~~i~l~d~~~~~~~----~-~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~   86 (106)
                      ....++|+|||..+++++.  ++.++++|..++++.    . .......+++..+            +..++.-.++.+.
T Consensus        22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~------------~lyv~t~~~~~v~   89 (266)
T 2iwa_A           22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNE------------KLYQVVWLKNIGF   89 (266)
T ss_dssp             CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETT------------EEEEEETTCSEEE
T ss_pred             CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCC------------EEEEEEecCCEEE
Confidence            4689999999865555553  689999999999881    1 1112233444422            2233344677899


Q ss_pred             EEECCCCCCCcEEEeC
Q 036317           87 AWSARSGKEPPVIKWA  102 (106)
Q Consensus        87 ~wd~~~~~~v~~i~~s  102 (106)
                      ++|.++.+.+..+.+.
T Consensus        90 viD~~t~~v~~~i~~g  105 (266)
T 2iwa_A           90 IYDRRTLSNIKNFTHQ  105 (266)
T ss_dssp             EEETTTTEEEEEEECC
T ss_pred             EEECCCCcEEEEEECC
Confidence            9999888755555443

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=96.74  E-value=0.0033  Score=48.36  Aligned_cols=52  Identities=23%  Similarity=0.291  Sum_probs=39.0

Q ss_pred             CeEEEEEcCCCce--e-ccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEEECCCCCCC
Q 036317           34 GHIHVLHSFQGTL--P-VSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSARSGKEP   96 (106)
Q Consensus        34 ~~i~l~d~~~~~~--~-~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd~~~~~~v   96 (106)
                      +.+..||+.+|+.  . ..........++..+           ..|+.|+.|+.++.||.++|+.+
T Consensus       455 g~l~A~D~~tG~~~W~~~~~~~~~~g~~~tag-----------glvf~gt~dg~l~a~D~~tG~~l  509 (689)
T 1yiq_A          455 GKLIAWDPVKQQAAWEVPYVTIFNGGTLSTAG-----------NLVFEGSADGRVIAYAADTGEKL  509 (689)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEETT-----------TEEEEECTTSEEEEEETTTCCEE
T ss_pred             eeEEEEECCCCCeEeEccCCCCccCccceECC-----------CEEEEECCCCcEEEEECCCCccc
Confidence            7799999999987  1 122222334566677           78888999999999999999933

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=96.69  E-value=0.017  Score=41.62  Aligned_cols=67  Identities=9%  Similarity=0.205  Sum_probs=53.0

Q ss_pred             CeeEEEECCCCCeEEEEe-CCCeEEEEEcCCCce---ecc---------------CCCcEEEEEecCCcceeeeeeeccc
Q 036317           14 DANEVKLSNDGRLMLLTT-LEGHIHVLHSFQGTL---PVS---------------HNSTLEASFSQHLSLVALSVLILRS   74 (106)
Q Consensus        14 ~v~~v~~spdg~~l~~~~-~~~~i~l~d~~~~~~---~~~---------------~~~~~~~~fs~d~~~~~~~~~~~~~   74 (106)
                      ....++++|+|+.+++-. .++.|+.||..++++   ...               ...+..+++++++           .
T Consensus       324 ~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g-----------~  392 (409)
T 3hrp_A          324 QPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEG-----------G  392 (409)
T ss_dssp             SEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSS-----------E
T ss_pred             CCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCC-----------C
Confidence            478999999999777777 789999999777776   111               2346779999999           8


Q ss_pred             EEEEecCCCcEEEEECC
Q 036317           75 WVLEGSGDGSVYAWSAR   91 (106)
Q Consensus        75 ~i~t~s~d~~i~~wd~~   91 (106)
                      .+++-..++.|+.++++
T Consensus       393 lyVad~~n~~Ir~i~~e  409 (409)
T 3hrp_A          393 YWIAEAWGKAIRKYAVE  409 (409)
T ss_dssp             EEEEESTTCEEEEEEEC
T ss_pred             EEEEECCCCeEEEEEeC
Confidence            88888888899888764

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=96.52  E-value=0.012  Score=44.83  Aligned_cols=67  Identities=6%  Similarity=0.080  Sum_probs=47.2

Q ss_pred             eEEEECCCCCeEEEEeCCC-------------eEEEEEcCCCce--------ec-cCCCcEEEEEecCCcceeeeeeecc
Q 036317           16 NEVKLSNDGRLMLLTTLEG-------------HIHVLHSFQGTL--------PV-SHNSTLEASFSQHLSLVALSVLILR   73 (106)
Q Consensus        16 ~~v~~spdg~~l~~~~~~~-------------~i~l~d~~~~~~--------~~-~~~~~~~~~fs~d~~~~~~~~~~~~   73 (106)
                      ..++|+ ||+.++.+..+.             .|++|++.++..        .. +......+.|||||           
T Consensus       178 ~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg-----------  245 (693)
T 3iuj_A          178 SGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDD-----------  245 (693)
T ss_dssp             CCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTS-----------
T ss_pred             ccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCC-----------
Confidence            577899 999999888774             489999876642        11 22345678999999           


Q ss_pred             cEEEEec----CCCcEEEEECCCCC
Q 036317           74 SWVLEGS----GDGSVYAWSARSGK   94 (106)
Q Consensus        74 ~~i~t~s----~d~~i~~wd~~~~~   94 (106)
                      ++|+..+    .+..|+++|+.++.
T Consensus       246 ~~l~~~~~~~~~~~~i~~~d~~~~~  270 (693)
T 3iuj_A          246 RFLLISAANSTSGNRLYVKDLSQEN  270 (693)
T ss_dssp             CEEEEEEESSSSCCEEEEEETTSTT
T ss_pred             CEEEEEEccCCCCcEEEEEECCCCC
Confidence            6553322    23589999998764

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=96.19  E-value=0.021  Score=44.19  Aligned_cols=70  Identities=9%  Similarity=-0.036  Sum_probs=45.2

Q ss_pred             eEEEECCCCCeEEEEeCC-----CeEEEEEcCCCce------e-ccCCCcEEEEEecCCcceeeeeeecccEEEEecCCC
Q 036317           16 NEVKLSNDGRLMLLTTLE-----GHIHVLHSFQGTL------P-VSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDG   83 (106)
Q Consensus        16 ~~v~~spdg~~l~~~~~~-----~~i~l~d~~~~~~------~-~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~   83 (106)
                      ..+.|+|||+.++.+..+     .+|+++++.++..      . ........+.|||||++|++....        ....
T Consensus       224 ~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~--------~~~~  295 (751)
T 2xe4_A          224 GEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQS--------PETA  295 (751)
T ss_dssp             SCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEEC--------SSCE
T ss_pred             eeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecC--------CCCc
Confidence            468899999988877654     3678888876642      1 122344678999999444433211        1234


Q ss_pred             cEEEEECCCC
Q 036317           84 SVYAWSARSG   93 (106)
Q Consensus        84 ~i~~wd~~~~   93 (106)
                      .|+++|+.++
T Consensus       296 ~l~~~d~~~~  305 (751)
T 2xe4_A          296 EVHLLDLRKG  305 (751)
T ss_dssp             EEEEEESSSC
T ss_pred             eEEEEECCCC
Confidence            7888888775

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=96.19  E-value=0.00082  Score=47.72  Aligned_cols=65  Identities=11%  Similarity=0.109  Sum_probs=35.2

Q ss_pred             CCCeEEEEeCCCeEEEEEcCCCcee--ccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEEECCCCCCCcEEE
Q 036317           23 DGRLMLLTTLEGHIHVLHSFQGTLP--VSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSARSGKEPPVIK  100 (106)
Q Consensus        23 dg~~l~~~~~~~~i~l~d~~~~~~~--~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd~~~~~~v~~i~  100 (106)
                      ++..+++++.++.++.||..+|+..  .....  ...++|++           ..|+.++.|+.++.||.++|+.+....
T Consensus        91 ~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~--~~~~~p~~-----------~~v~~~~~dg~v~a~d~~tG~~~W~~~  157 (369)
T 2hz6_A           91 SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF--ADSLSPST-----------SLLYLGRTEYTITMYDTKTRELRWNAT  157 (369)
T ss_dssp             ----CCCCEEEEEEEEECCC-----------------------------------EEEEEEEEEEECCCSSSSSCCCEEE
T ss_pred             cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC--cccccccC-----------CEEEEEecCCEEEEEECCCCCEEEeEe
Confidence            3445677788899999999999871  11111  23456788           888999999999999999998555543

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=96.13  E-value=0.038  Score=38.07  Aligned_cols=65  Identities=14%  Similarity=0.036  Sum_probs=48.5

Q ss_pred             EEECCCCCeEEEEeCCCeEEEEEcCCCce----ec-c----CCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEE
Q 036317           18 VKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PV-S----HNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAW   88 (106)
Q Consensus        18 v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~-~----~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~w   88 (106)
                      ..+++||+.++++..++.++++|..+.+.    .. .    ...+..+.|. ++           +..+....++.|.+.
T Consensus       110 ~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg-----------~lyvn~~~~~~V~vI  177 (266)
T 2iwa_A          110 WGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NG-----------EVWANIWQTDCIARI  177 (266)
T ss_dssp             CEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TT-----------EEEEEETTSSEEEEE
T ss_pred             EEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CC-----------EEEEecCCCCeEEEE
Confidence            45778898888888889999999998876    11 1    1124456777 77           655666567899999


Q ss_pred             ECCCCC
Q 036317           89 SARSGK   94 (106)
Q Consensus        89 d~~~~~   94 (106)
                      |.++++
T Consensus       178 D~~tg~  183 (266)
T 2iwa_A          178 SAKDGT  183 (266)
T ss_dssp             ETTTCC
T ss_pred             ECCCCc
Confidence            999998

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=96.12  E-value=0.069  Score=36.41  Aligned_cols=71  Identities=13%  Similarity=0.120  Sum_probs=46.8

Q ss_pred             CCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce--eccCCCcEEEEEecCCcceeeeeeecccEEEEecCC--CcEEEE
Q 036317           13 SDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL--PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGD--GSVYAW   88 (106)
Q Consensus        13 ~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~--~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d--~~i~~w   88 (106)
                      .....++++++|+.+++-..++.|+.+|......  ......+..++++++|           +.+++....  ..|..+
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~~~~~~~~~~p~gia~~~dG-----------~l~vad~~~~~~~v~~~  100 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQIHATVEGKVSGLAFTSNG-----------DLVATGWNADSIPVVSL  100 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEEECSSEEEEEEECTTS-----------CEEEEEECTTSCEEEEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCCceEEEEeCCCCceeEEEcCCC-----------cEEEEeccCCcceEEEE
Confidence            4678999999999666666889999999765433  1122345678999999           644444322  235556


Q ss_pred             ECCCCC
Q 036317           89 SARSGK   94 (106)
Q Consensus        89 d~~~~~   94 (106)
                      |..+|+
T Consensus       101 d~~~g~  106 (306)
T 2p4o_A          101 VKSDGT  106 (306)
T ss_dssp             ECTTSC
T ss_pred             cCCCCe
Confidence            655554

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=95.90  E-value=0.072  Score=40.97  Aligned_cols=77  Identities=12%  Similarity=0.176  Sum_probs=54.3

Q ss_pred             eEEEECCCCCeEEEEeCCCe-------------------EEEEEcCCCce----ec-cC--------CCcEEEEEecCCc
Q 036317           16 NEVKLSNDGRLMLLTTLEGH-------------------IHVLHSFQGTL----PV-SH--------NSTLEASFSQHLS   63 (106)
Q Consensus        16 ~~v~~spdg~~l~~~~~~~~-------------------i~l~d~~~~~~----~~-~~--------~~~~~~~fs~d~~   63 (106)
                      ..+.++|++..+++++.++.                   +..+|..+|+.    +. ++        ..........+| 
T Consensus       238 ~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G-  316 (689)
T 1yiq_A          238 DSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDG-  316 (689)
T ss_dssp             SCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETT-
T ss_pred             cceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCC-
Confidence            46889999888888877753                   89999999987    11 11        111222223355 


Q ss_pred             ceeeeeeeccc---EEEEecCCCcEEEEECCCCCCCcEEEeCC
Q 036317           64 LVALSVLILRS---WVLEGSGDGSVYAWSARSGKEPPVIKWAP  103 (106)
Q Consensus        64 ~~~~~~~~~~~---~i~t~s~d~~i~~wd~~~~~~v~~i~~sp  103 (106)
                                +   .++.++.+|.++++|.++|+.+....+.|
T Consensus       317 ----------~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~  349 (689)
T 1yiq_A          317 ----------KPRKVLMQAPKNGFFYVIDRATGELLSAKGIVP  349 (689)
T ss_dssp             ----------EEEEEEEECCTTSEEEEEETTTCCEEEEEESSC
T ss_pred             ----------cEEEEEEEECCCCeEEEEECCCCCEeccccccc
Confidence                      4   78899999999999999999665554443

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=95.84  E-value=0.24  Score=36.70  Aligned_cols=82  Identities=16%  Similarity=0.153  Sum_probs=57.3

Q ss_pred             ceeeecCC--CCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----------------e-c-----cCCCcEEEEE
Q 036317            3 FDIFSDGG--DVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----------------P-V-----SHNSTLEASF   58 (106)
Q Consensus         3 ~~~~~~~~--~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----------------~-~-----~~~~~~~~~f   58 (106)
                      |...++..  ..++|..+..||+|++++..+ +++++|..+-.+..                . .     ....+..+.|
T Consensus        54 Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlW  132 (452)
T 3pbp_A           54 YHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLF  132 (452)
T ss_dssp             CEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEE
T ss_pred             ceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEe
Confidence            44455542  345788999999999777764 67899988763321                0 0     1345778999


Q ss_pred             ecCCcceeeeeeecccEEEEecCCCcEEEEECCCC
Q 036317           59 SQHLSLVALSVLILRSWVLEGSGDGSVYAWSARSG   93 (106)
Q Consensus        59 s~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd~~~~   93 (106)
                      +|-+        -....|+.--+|+.|++||+...
T Consensus       133 HPl~--------~~ds~LVVLtsD~~Ir~yDl~~s  159 (452)
T 3pbp_A          133 HPKS--------YRDSCIVVLKEDDTITMFDILNS  159 (452)
T ss_dssp             CTTB--------GGGCEEEEEETTSCEEEEETTCT
T ss_pred             cccc--------CCCCeEEEEecCCEEEEEEcccC
Confidence            9986        11247888888999999999963

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=95.78  E-value=0.1  Score=35.94  Aligned_cols=75  Identities=15%  Similarity=0.119  Sum_probs=47.1

Q ss_pred             CeeEEEECCCCCeEEEEeCCC--eEEEEEcCCCce----eccCCC-cEEEEEecCCcceeeeeeecccEEEEecCCCcEE
Q 036317           14 DANEVKLSNDGRLMLLTTLEG--HIHVLHSFQGTL----PVSHNS-TLEASFSQHLSLVALSVLILRSWVLEGSGDGSVY   86 (106)
Q Consensus        14 ~v~~v~~spdg~~l~~~~~~~--~i~l~d~~~~~~----~~~~~~-~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~   86 (106)
                      -...+.|+ ++..+.+++.++  .++.+|..++++    ...... ...++...+.           -|+++ -.++.+.
T Consensus        44 ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~-----------ly~lt-w~~~~v~  110 (262)
T 3nol_A           44 FTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDK-----------IVGLT-WKNGLGF  110 (262)
T ss_dssp             EEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTE-----------EEEEE-SSSSEEE
T ss_pred             ccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCE-----------EEEEE-eeCCEEE
Confidence            45789998 677667777765  899999999998    111111 1234443332           33333 3566888


Q ss_pred             EEECCCCCCCcEEEe
Q 036317           87 AWSARSGKEPPVIKW  101 (106)
Q Consensus        87 ~wd~~~~~~v~~i~~  101 (106)
                      ++|.++.+.+..+.+
T Consensus       111 v~D~~t~~~~~ti~~  125 (262)
T 3nol_A          111 VWNIRNLRQVRSFNY  125 (262)
T ss_dssp             EEETTTCCEEEEEEC
T ss_pred             EEECccCcEEEEEEC
Confidence            888888775555544

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=95.63  E-value=0.056  Score=36.96  Aligned_cols=44  Identities=5%  Similarity=0.045  Sum_probs=32.7

Q ss_pred             ceeeecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce
Q 036317            3 FDIFSDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL   46 (106)
Q Consensus         3 ~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~   46 (106)
                      +..+.+.+.-.....++++++|+.+.+...++.|..||..+++.
T Consensus         9 ~~~i~~~g~~~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~   52 (322)
T 2fp8_A            9 LKEILIEAPSYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGF   52 (322)
T ss_dssp             -CEEEEECSSSCCCCEECCTTCSSEEEECTTSEEEEECCTTTCE
T ss_pred             cceeecCCccCCceEEEEcCCCCEEEEEcCCCeEEEECCCCCce
Confidence            34455554444677899999999788888889999999877654

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=95.59  E-value=0.056  Score=41.36  Aligned_cols=77  Identities=17%  Similarity=0.208  Sum_probs=54.3

Q ss_pred             eeEEEECCCCCeEEEEeCCC-------------------eEEEEEcCCCce----ec-cC--------CCcEEEEEecCC
Q 036317           15 ANEVKLSNDGRLMLLTTLEG-------------------HIHVLHSFQGTL----PV-SH--------NSTLEASFSQHL   62 (106)
Q Consensus        15 v~~v~~spdg~~l~~~~~~~-------------------~i~l~d~~~~~~----~~-~~--------~~~~~~~fs~d~   62 (106)
                      ...++++|++..+..++.++                   .+.-+|..+|+.    +. ++        .......+..+|
T Consensus       232 w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G  311 (668)
T 1kv9_A          232 WDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDG  311 (668)
T ss_dssp             CSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETT
T ss_pred             ccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCC
Confidence            34678999888888887665                   388999999987    11 11        122223334566


Q ss_pred             cceeeeeeeccc---EEEEecCCCcEEEEECCCCCCCcEEEeC
Q 036317           63 SLVALSVLILRS---WVLEGSGDGSVYAWSARSGKEPPVIKWA  102 (106)
Q Consensus        63 ~~~~~~~~~~~~---~i~t~s~d~~i~~wd~~~~~~v~~i~~s  102 (106)
                                 +   .|+.++.+|.++++|.++|+.+..+.+.
T Consensus       312 -----------~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~  343 (668)
T 1kv9_A          312 -----------KPRKVLMQAPKNGFFYVLDRTNGKLISAEKFG  343 (668)
T ss_dssp             -----------EEEEEEEECCTTSEEEEEETTTCCEEEEEESS
T ss_pred             -----------cEEEEEEEECCCCEEEEEECCCCCEecccccc
Confidence                       5   6889999999999999999966544443

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=95.56  E-value=0.027  Score=42.40  Aligned_cols=54  Identities=19%  Similarity=0.164  Sum_probs=35.5

Q ss_pred             CCeEEEEEcCCCce--ec-cCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEEECCCCCCCc
Q 036317           33 EGHIHVLHSFQGTL--PV-SHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSARSGKEPP   97 (106)
Q Consensus        33 ~~~i~l~d~~~~~~--~~-~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd~~~~~~v~   97 (106)
                      ++.+..+|..+++.  .. .........+...+           ..|..++.|+.++.+|.++|+.+.
T Consensus       443 ~g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t~g-----------g~v~~g~~dg~l~a~D~~tG~~lw  499 (571)
T 2ad6_A          443 MGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKG-----------GLVWYATLDGYLKALDNKDGKELW  499 (571)
T ss_dssp             CEEEEEECTTTCCEEEEEEESSCCCSBCEEETT-----------TEEEEECTTSEEEEEETTTCCEEE
T ss_pred             CCeEEEEECCCCCEEEEecCCCCccceeEEECC-----------CEEEEEcCCCeEEEEECCCCCEEE
Confidence            47888999988887  11 11111112223344           566778899999999999999443

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=95.49  E-value=0.25  Score=32.63  Aligned_cols=80  Identities=11%  Similarity=-0.083  Sum_probs=50.3

Q ss_pred             CeeEEEECCCCCeEEEE-eCCCeEEEEEcCCCce---eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEEE
Q 036317           14 DANEVKLSNDGRLMLLT-TLEGHIHVLHSFQGTL---PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWS   89 (106)
Q Consensus        14 ~v~~v~~spdg~~l~~~-~~~~~i~l~d~~~~~~---~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd   89 (106)
                      ..+.++++|+++++..+ ...+.|..+|......   ......+..++.. ++           ...++...++.|..+|
T Consensus       168 ~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~P~gi~~d-~~-----------~lyva~~~~~~v~~~d  235 (267)
T 1npe_A          168 LPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSY-GK-----------NLYYTDWKTNSVIAMD  235 (267)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEE-TT-----------EEEEEETTTTEEEEEE
T ss_pred             CCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCCCCceEEEEe-CC-----------EEEEEECCCCeEEEEe
Confidence            56789999987766554 4668899999865433   1111233444443 23           3444444567999999


Q ss_pred             CCCCC-----------CCcEEEeCCCC
Q 036317           90 ARSGK-----------EPPVIKWAPGS  105 (106)
Q Consensus        90 ~~~~~-----------~v~~i~~sp~~  105 (106)
                      .++|+           .+..+.+.|+.
T Consensus       236 ~~~g~~~~~i~~g~~~~p~gi~~~~~~  262 (267)
T 1npe_A          236 LAISKEMDTFHPHKQTRLYGITIALSQ  262 (267)
T ss_dssp             TTTTEEEEEECCSSCCCCCCEEEECSC
T ss_pred             CCCCCceEEEccccccccceeeecCcc
Confidence            98887           24566666653

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=95.44  E-value=0.11  Score=39.81  Aligned_cols=81  Identities=16%  Similarity=0.192  Sum_probs=55.8

Q ss_pred             eeEEEECCCCCeEEEEeCCC-------------------eEEEEEcCCCce----ec-cC--------CCcEEEEEecCC
Q 036317           15 ANEVKLSNDGRLMLLTTLEG-------------------HIHVLHSFQGTL----PV-SH--------NSTLEASFSQHL   62 (106)
Q Consensus        15 v~~v~~spdg~~l~~~~~~~-------------------~i~l~d~~~~~~----~~-~~--------~~~~~~~fs~d~   62 (106)
                      ...++++|++..+++++.++                   .+..+|..+|+.    +. .+        ..+.-+....+|
T Consensus       245 w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG  324 (677)
T 1kb0_A          245 WDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAG  324 (677)
T ss_dssp             CSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETT
T ss_pred             ccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCC
Confidence            35688999998888877654                   489999999987    11 11        122223344466


Q ss_pred             cceeeeeeecccEEEEecCCCcEEEEECCCCCCCcEEEeCC
Q 036317           63 SLVALSVLILRSWVLEGSGDGSVYAWSARSGKEPPVIKWAP  103 (106)
Q Consensus        63 ~~~~~~~~~~~~~i~t~s~d~~i~~wd~~~~~~v~~i~~sp  103 (106)
                      +        .++.++.++.+|.++++|.++|+.+..+.+.|
T Consensus       325 ~--------~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~  357 (677)
T 1kb0_A          325 K--------PRKVILHAPKNGFFFVLDRTNGKFISAKNFVP  357 (677)
T ss_dssp             E--------EEEEEEECCTTSEEEEEETTTCCEEEEEESSC
T ss_pred             c--------EeeEEEEECCCCEEEEEECCCCCEeccccccc
Confidence            0        01368899999999999999999666665543

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=95.41  E-value=0.061  Score=37.27  Aligned_cols=64  Identities=9%  Similarity=-0.102  Sum_probs=44.7

Q ss_pred             EECCCCCeEEEEeCCCeEEEEEcCCCce----ec-----cCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEEE
Q 036317           19 KLSNDGRLMLLTTLEGHIHVLHSFQGTL----PV-----SHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWS   89 (106)
Q Consensus        19 ~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~-----~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd   89 (106)
                      .+++||+.+.++..+++++++|..+.+.    ..     ....+..+.|. +|           +..+..-.+..|.+.|
T Consensus       140 GLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG-----------~lyanvw~s~~I~vID  207 (268)
T 3nok_A          140 GLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NG-----------VIYANIWHSSDVLEID  207 (268)
T ss_dssp             CEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TT-----------EEEEEETTCSEEEEEC
T ss_pred             EEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CC-----------EEEEEECCCCeEEEEe
Confidence            3446788888887789999999998877    11     11233445666 77           6555555667899999


Q ss_pred             CCCCC
Q 036317           90 ARSGK   94 (106)
Q Consensus        90 ~~~~~   94 (106)
                      .++|+
T Consensus       208 p~TG~  212 (268)
T 3nok_A          208 PATGT  212 (268)
T ss_dssp             TTTCB
T ss_pred             CCCCc
Confidence            99888

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=95.39  E-value=0.35  Score=32.95  Aligned_cols=73  Identities=14%  Similarity=0.167  Sum_probs=51.6

Q ss_pred             cCCCCCCeeEEEECCCCCeEE-EEeCCCeEEEEEcCCCce----e-ccCCCcEEEEEecCCcceeeeeeecccEEEEecC
Q 036317            8 DGGDVSDANEVKLSNDGRLML-LTTLEGHIHVLHSFQGTL----P-VSHNSTLEASFSQHLSLVALSVLILRSWVLEGSG   81 (106)
Q Consensus         8 ~~~~~~~v~~v~~spdg~~l~-~~~~~~~i~l~d~~~~~~----~-~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~   81 (106)
                      +.+-.+.++.++++|+++.|. +...++.|..+|.. +++    + ........+++.+++           +++++.-.
T Consensus        22 l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g-----------~~~vs~E~   89 (255)
T 3qqz_A           22 IAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDN-----------QFVISDER   89 (255)
T ss_dssp             CTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTT-----------EEEEEETT
T ss_pred             CCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCC-----------EEEEEECC
Confidence            445556899999999876555 56677888888987 776    1 112345668888999           77776656


Q ss_pred             CCcEEEEECCC
Q 036317           82 DGSVYAWSARS   92 (106)
Q Consensus        82 d~~i~~wd~~~   92 (106)
                      ++.+.++++..
T Consensus        90 ~~~l~~~~v~~  100 (255)
T 3qqz_A           90 DYAIYVISLTP  100 (255)
T ss_dssp             TTEEEEEEECT
T ss_pred             CCcEEEEEcCC
Confidence            66777777654

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=95.36  E-value=0.1  Score=38.81  Aligned_cols=57  Identities=12%  Similarity=0.068  Sum_probs=40.7

Q ss_pred             CCeeEEEECCCCCeEEEEe-CCCeEEEEEcCC-Cce----eccCC----------------CcEEEEEecCCcceeeeee
Q 036317           13 SDANEVKLSNDGRLMLLTT-LEGHIHVLHSFQ-GTL----PVSHN----------------STLEASFSQHLSLVALSVL   70 (106)
Q Consensus        13 ~~v~~v~~spdg~~l~~~~-~~~~i~l~d~~~-~~~----~~~~~----------------~~~~~~fs~d~~~~~~~~~   70 (106)
                      .....+.+||||++|.++. ..+.|.++|+.+ ++.    ....+                .+..+.++|||        
T Consensus       321 ~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDG--------  392 (462)
T 2ece_A          321 PLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDG--------  392 (462)
T ss_dssp             CCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTS--------
T ss_pred             CceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCC--------
Confidence            3578999999999998776 468999999853 222    11111                24568999999        


Q ss_pred             ecccEEEEec
Q 036317           71 ILRSWVLEGS   80 (106)
Q Consensus        71 ~~~~~i~t~s   80 (106)
                         ++++.+.
T Consensus       393 ---k~LyVaN  399 (462)
T 2ece_A          393 ---RRVYVTN  399 (462)
T ss_dssp             ---SEEEEEC
T ss_pred             ---CEEEEEc
Confidence               7777666

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=95.17  E-value=0.086  Score=36.35  Aligned_cols=64  Identities=11%  Similarity=0.074  Sum_probs=43.4

Q ss_pred             EECCCCCeEEEEeCCCeEEEEEcCCCce----ec-c----CCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEEE
Q 036317           19 KLSNDGRLMLLTTLEGHIHVLHSFQGTL----PV-S----HNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWS   89 (106)
Q Consensus        19 ~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~-~----~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd   89 (106)
                      .+++||+.+.++..+++++++|..+.+.    .. .    ...+..+.|. +|           +..+..-.+..|.+.|
T Consensus       131 glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G-----------~lyan~w~~~~I~vID  198 (262)
T 3nol_A          131 GLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DG-----------EIFANVWQTNKIVRID  198 (262)
T ss_dssp             CEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TT-----------EEEEEETTSSEEEEEC
T ss_pred             EEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CC-----------EEEEEEccCCeEEEEE
Confidence            4456788787777788899999988876    11 1    1222345665 77           6555555667899999


Q ss_pred             CCCCC
Q 036317           90 ARSGK   94 (106)
Q Consensus        90 ~~~~~   94 (106)
                      .++|+
T Consensus       199 p~tG~  203 (262)
T 3nol_A          199 PETGK  203 (262)
T ss_dssp             TTTCB
T ss_pred             CCCCc
Confidence            98888

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=95.14  E-value=0.11  Score=39.85  Aligned_cols=68  Identities=10%  Similarity=0.185  Sum_probs=45.5

Q ss_pred             CeeEEEECCCCCeEEEEeCCC--------------------------------------eEEEEEcCC--Cce-----ec
Q 036317           14 DANEVKLSNDGRLMLLTTLEG--------------------------------------HIHVLHSFQ--GTL-----PV   48 (106)
Q Consensus        14 ~v~~v~~spdg~~l~~~~~~~--------------------------------------~i~l~d~~~--~~~-----~~   48 (106)
                      .-..++++|||+++++++.+.                                      .+.++|..+  ++.     +.
T Consensus       196 ~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipv  275 (595)
T 1fwx_A          196 NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPI  275 (595)
T ss_dssp             CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEE
T ss_pred             CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEec
Confidence            346788999999999888553                                      355566555  222     11


Q ss_pred             cCCCcEEEEEecCCcceeeeeeecccEEEEec-CCCcEEEEECCCC
Q 036317           49 SHNSTLEASFSQHLSLVALSVLILRSWVLEGS-GDGSVYAWSARSG   93 (106)
Q Consensus        49 ~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s-~d~~i~~wd~~~~   93 (106)
                      . ..+-.+.++|||           ++++.++ .+.+|.++|+.+.
T Consensus       276 g-~~PhGv~~sPDG-----------k~v~V~~~~s~~VsVid~~~~  309 (595)
T 1fwx_A          276 A-NNPHGCNMAPDK-----------KHLCVAGKLSPTVTVLDVTRF  309 (595)
T ss_dssp             E-SSCCCEEECTTS-----------SEEEEECTTSSBEEEEEGGGH
T ss_pred             C-CCceEEEEcCCC-----------CEEEEeCCCCCeEEEEECccc
Confidence            1 123348999999           8766554 5679999999854

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=95.00  E-value=0.16  Score=35.25  Aligned_cols=61  Identities=21%  Similarity=0.277  Sum_probs=38.5

Q ss_pred             CCCeEEEEeCCCeEEEEEcCCCce--eccC----------CCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEEEC
Q 036317           23 DGRLMLLTTLEGHIHVLHSFQGTL--PVSH----------NSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSA   90 (106)
Q Consensus        23 dg~~l~~~~~~~~i~l~d~~~~~~--~~~~----------~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd~   90 (106)
                      ++..+.+++.++.+..+|..+|+.  ....          ..........++           ..|..++.++.++.+|.
T Consensus        52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~v~v~~~~g~l~a~d~  120 (376)
T 3q7m_A           52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSG-----------GHVYIGSEKAQVYALNT  120 (376)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEET-----------TEEEEEETTSEEEEEET
T ss_pred             ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceEeC-----------CEEEEEcCCCEEEEEEC
Confidence            356688888889999999999987  1111          111222222233           45556666777777777


Q ss_pred             CCCC
Q 036317           91 RSGK   94 (106)
Q Consensus        91 ~~~~   94 (106)
                      ++|+
T Consensus       121 ~tG~  124 (376)
T 3q7m_A          121 SDGT  124 (376)
T ss_dssp             TTCC
T ss_pred             CCCC
Confidence            7776

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=94.98  E-value=0.27  Score=34.04  Aligned_cols=75  Identities=11%  Similarity=0.136  Sum_probs=47.9

Q ss_pred             CeeEEEECCCCCeEEEEeCCCeEEEEEcCCCceec--cCCCc--EEEEEecCCcceeeeeeecccEEEEecCCCcEEEEE
Q 036317           14 DANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTLPV--SHNST--LEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWS   89 (106)
Q Consensus        14 ~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~~~--~~~~~--~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd   89 (106)
                      -...+.|+ ++..+.+++.++.++.+|..++++..  -....  ..+++..+.           -|++ .-.++.+.++|
T Consensus        56 ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~l~~~~FgeGit~~g~~-----------Ly~l-tw~~~~v~V~D  122 (268)
T 3nok_A           56 FTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWMERLGNIFAEGLASDGER-----------LYQL-TWTEGLLFTWS  122 (268)
T ss_dssp             CEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEEECTTCCEEEEEECSSC-----------EEEE-ESSSCEEEEEE
T ss_pred             ccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEECCCCcceeEEEEeCCE-----------EEEE-EccCCEEEEEE
Confidence            45788887 46666788888999999999998821  11111  234444333           3443 33566888888


Q ss_pred             CCCCCCCcEEEe
Q 036317           90 ARSGKEPPVIKW  101 (106)
Q Consensus        90 ~~~~~~v~~i~~  101 (106)
                      .++.+.+..+.+
T Consensus       123 ~~Tl~~~~ti~~  134 (268)
T 3nok_A          123 GMPPQRERTTRY  134 (268)
T ss_dssp             TTTTEEEEEEEC
T ss_pred             CCcCcEEEEEeC
Confidence            888775555554

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=94.91  E-value=0.24  Score=33.78  Aligned_cols=68  Identities=12%  Similarity=0.028  Sum_probs=46.6

Q ss_pred             CeeEEEECC-CCCeEEEEeC-----------------CCeEEEEEcCCCcee---ccCCCcEEEEEecCCcceeeeeeec
Q 036317           14 DANEVKLSN-DGRLMLLTTL-----------------EGHIHVLHSFQGTLP---VSHNSTLEASFSQHLSLVALSVLIL   72 (106)
Q Consensus        14 ~v~~v~~sp-dg~~l~~~~~-----------------~~~i~l~d~~~~~~~---~~~~~~~~~~fs~d~~~~~~~~~~~   72 (106)
                      ..+.++++| +|+.+++...                 ++.+..+|..+++..   ........++++||+          
T Consensus       127 ~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg----------  196 (322)
T 2fp8_A          127 WLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADS----------  196 (322)
T ss_dssp             CEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEEEESCCCEEEECTTS----------
T ss_pred             ccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEeccCCccCcceEECCCC----------
Confidence            568899999 9986665432                 367888888777651   112234568999999          


Q ss_pred             ccEEEEe-cCCCcEEEEECCC
Q 036317           73 RSWVLEG-SGDGSVYAWSARS   92 (106)
Q Consensus        73 ~~~i~t~-s~d~~i~~wd~~~   92 (106)
                       +++..+ ..++.|+++++..
T Consensus       197 -~~lyv~d~~~~~I~~~~~~~  216 (322)
T 2fp8_A          197 -SFVLVAEFLSHQIVKYWLEG  216 (322)
T ss_dssp             -SEEEEEEGGGTEEEEEESSS
T ss_pred             -CEEEEEeCCCCeEEEEECCC
Confidence             755433 4567888888875

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=94.56  E-value=0.2  Score=34.13  Aligned_cols=65  Identities=14%  Similarity=0.040  Sum_probs=43.3

Q ss_pred             EEECCCCCeEEEEeCCCeEEEEEcCCCce----ec-----cCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEE
Q 036317           18 VKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PV-----SHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAW   88 (106)
Q Consensus        18 v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~-----~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~w   88 (106)
                      ..+++|++.+.++..+++++++|..+.+.    ..     ....+..+.+. +|           +..+..-.+..|.+.
T Consensus       108 wglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G-----------~lyanvw~s~~I~vI  175 (243)
T 3mbr_X          108 WALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NG-----------ELLANVWLTSRIARI  175 (243)
T ss_dssp             CEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TT-----------EEEEEETTTTEEEEE
T ss_pred             eEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CC-----------EEEEEECCCCeEEEE
Confidence            34557788788877889999999988876    11     11223345544 66           544454456688888


Q ss_pred             ECCCCC
Q 036317           89 SARSGK   94 (106)
Q Consensus        89 d~~~~~   94 (106)
                      |.++|+
T Consensus       176 Dp~tG~  181 (243)
T 3mbr_X          176 DPASGK  181 (243)
T ss_dssp             CTTTCB
T ss_pred             ECCCCC
Confidence            888887

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=94.40  E-value=0.09  Score=39.72  Aligned_cols=52  Identities=27%  Similarity=0.461  Sum_probs=34.4

Q ss_pred             CCeEEEEEcCCCce--ec-cCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEEECCCCCC
Q 036317           33 EGHIHVLHSFQGTL--PV-SHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSARSGKE   95 (106)
Q Consensus        33 ~~~i~l~d~~~~~~--~~-~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd~~~~~~   95 (106)
                      .+.+.-||..+|+.  .. .............+           ..|..++.|+.++.+|.++|+.
T Consensus       465 ~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tag-----------glvf~g~~dg~l~A~D~~tG~~  519 (582)
T 1flg_A          465 VGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAG-----------NLVFTGTGDGYFKAFDAKSGKE  519 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESSCCCSCCEEETT-----------TEEEEECTTSEEEEEETTTCCE
T ss_pred             cceEEEEECCCCCEEEEecCCCCCcccceEeCC-----------CEEEEECCCCcEEEEECCCCCE
Confidence            57788899999887  11 11111111122234           5677789999999999999993

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=94.37  E-value=0.72  Score=31.33  Aligned_cols=33  Identities=12%  Similarity=0.065  Sum_probs=25.7

Q ss_pred             CCeeEEEECCCCCeEEEEeCC--CeEEEEEcCCCce
Q 036317           13 SDANEVKLSNDGRLMLLTTLE--GHIHVLHSFQGTL   46 (106)
Q Consensus        13 ~~v~~v~~spdg~~l~~~~~~--~~i~l~d~~~~~~   46 (106)
                      .-...+.|++ +..+.+++.+  ..++.+|..++++
T Consensus        21 ~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv   55 (243)
T 3mbr_X           21 AFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRI   55 (243)
T ss_dssp             CCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCE
T ss_pred             cccccEEEEC-CEEEEECCCCCCceEEEEECCCCCE
Confidence            3677999987 5655666664  4899999999998

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=94.33  E-value=0.57  Score=33.83  Aligned_cols=80  Identities=11%  Similarity=0.144  Sum_probs=49.7

Q ss_pred             CCeeEEEECCCCCeEEEEeCC-----CeEEEEEcCCCce-----eccCCCcEEEEEec-CCcceeeeeeecccEEEEecC
Q 036317           13 SDANEVKLSNDGRLMLLTTLE-----GHIHVLHSFQGTL-----PVSHNSTLEASFSQ-HLSLVALSVLILRSWVLEGSG   81 (106)
Q Consensus        13 ~~v~~v~~spdg~~l~~~~~~-----~~i~l~d~~~~~~-----~~~~~~~~~~~fs~-d~~~~~~~~~~~~~~i~t~s~   81 (106)
                      .....++|+++|++|+++...     ..+.+++. ++..     ......+..++++| ++           ...++-..
T Consensus       179 ~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~~~~~~~l~~~~~p~giavdp~~g-----------~lyv~d~~  246 (430)
T 3tc9_A          179 SKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ESGFKVITELTKGQNCNGAETHPING-----------ELYFNSWN  246 (430)
T ss_dssp             SCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GGTSCSEEEEEECSSCCCEEECTTTC-----------CEEEEETT
T ss_pred             CCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CCceeeeeeeccCCCceEEEEeCCCC-----------EEEEEECC
Confidence            467899999999977666542     13444443 2222     11223345578899 66           65555556


Q ss_pred             CCcEEEEECCCCC-----------CCcEEEeCCC
Q 036317           82 DGSVYAWSARSGK-----------EPPVIKWAPG  104 (106)
Q Consensus        82 d~~i~~wd~~~~~-----------~v~~i~~sp~  104 (106)
                      ++.|+.++..++.           ..+.++|+|+
T Consensus       247 ~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pd  280 (430)
T 3tc9_A          247 AGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPS  280 (430)
T ss_dssp             TTEEEEEETTTTEEEEEEECSSSSCCEEEEECTT
T ss_pred             CCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCC
Confidence            6788888877543           3567888775

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=94.32  E-value=0.35  Score=34.94  Aligned_cols=67  Identities=7%  Similarity=0.052  Sum_probs=46.7

Q ss_pred             CeeEEEECC-CCCeEEEEeCCCeEEEEEcCCCce----e-ccCCCcEEEEEecCCcceeeeeeecccEE-EEecCCCcEE
Q 036317           14 DANEVKLSN-DGRLMLLTTLEGHIHVLHSFQGTL----P-VSHNSTLEASFSQHLSLVALSVLILRSWV-LEGSGDGSVY   86 (106)
Q Consensus        14 ~v~~v~~sp-dg~~l~~~~~~~~i~l~d~~~~~~----~-~~~~~~~~~~fs~d~~~~~~~~~~~~~~i-~t~s~d~~i~   86 (106)
                      ....++++| +|..+++-..++.|..+|..++..    . .....+..++|+|++           +++ ++-..++.|+
T Consensus       227 ~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG-----------~~lyv~d~~~~~I~  295 (430)
T 3tc9_A          227 NCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSG-----------NYAYIVVVNQHYIL  295 (430)
T ss_dssp             SCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTS-----------SEEEEEETTTTEEE
T ss_pred             CceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCC-----------CEEEEEECCCCEEE
Confidence            456788999 677666666778999999877654    1 122346779999999           743 4444566888


Q ss_pred             EEECC
Q 036317           87 AWSAR   91 (106)
Q Consensus        87 ~wd~~   91 (106)
                      .++..
T Consensus       296 ~~~~d  300 (430)
T 3tc9_A          296 RSDYD  300 (430)
T ss_dssp             EEEEE
T ss_pred             EEeCC
Confidence            87655

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=94.23  E-value=0.71  Score=30.40  Aligned_cols=68  Identities=9%  Similarity=-0.074  Sum_probs=44.7

Q ss_pred             CeeEEEECCCCCeEEEE-eCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEE-EEecCCCcEEE
Q 036317           14 DANEVKLSNDGRLMLLT-TLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWV-LEGSGDGSVYA   87 (106)
Q Consensus        14 ~v~~v~~spdg~~l~~~-~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i-~t~s~d~~i~~   87 (106)
                      ....++++++++.+..+ ..++.|..+|......    ......+..+++++++           ..| ++-..++.|.+
T Consensus        37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~-----------~~lyv~d~~~~~I~~  105 (267)
T 1npe_A           37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLG-----------RTIFWTDSQLDRIEV  105 (267)
T ss_dssp             EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTT-----------TEEEEEETTTTEEEE
T ss_pred             cEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecC-----------CeEEEEECCCCEEEE
Confidence            34688999976666554 4678999999866544    1122356678999875           433 34445567888


Q ss_pred             EECCC
Q 036317           88 WSARS   92 (106)
Q Consensus        88 wd~~~   92 (106)
                      +++..
T Consensus       106 ~~~~g  110 (267)
T 1npe_A          106 AKMDG  110 (267)
T ss_dssp             EETTS
T ss_pred             EEcCC
Confidence            87753

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=94.16  E-value=0.25  Score=37.46  Aligned_cols=67  Identities=10%  Similarity=0.146  Sum_probs=47.1

Q ss_pred             EEEECC-CCCeEEEEeCCC-----------eEEEEEcCCCce------ec-cCCCcEEEEEecCCcceeeeeeecccEEE
Q 036317           17 EVKLSN-DGRLMLLTTLEG-----------HIHVLHSFQGTL------PV-SHNSTLEASFSQHLSLVALSVLILRSWVL   77 (106)
Q Consensus        17 ~v~~sp-dg~~l~~~~~~~-----------~i~l~d~~~~~~------~~-~~~~~~~~~fs~d~~~~~~~~~~~~~~i~   77 (106)
                      ++++.| +|+.++.++.+.           .+.+||..+++.      +. .......+++.+++           +.++
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g-----------~lyv  258 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNG-----------QIVV  258 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTS-----------CEEE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCC-----------CEEE
Confidence            667777 888888876542           578999988875      11 12223346778899           8888


Q ss_pred             EecC-CCcEEEEECCCCC
Q 036317           78 EGSG-DGSVYAWSARSGK   94 (106)
Q Consensus        78 t~s~-d~~i~~wd~~~~~   94 (106)
                      .|+. +..+.+||.++++
T Consensus       259 ~GG~~~~~v~~yd~~t~~  276 (656)
T 1k3i_A          259 TGGNDAKKTSLYDSSSDS  276 (656)
T ss_dssp             ECSSSTTCEEEEEGGGTE
T ss_pred             eCCCCCCceEEecCcCCc
Confidence            8774 4589999988765

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=93.98  E-value=0.22  Score=33.83  Aligned_cols=64  Identities=14%  Similarity=-0.047  Sum_probs=42.9

Q ss_pred             CeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce---------eccCC--CcEEEEEecCCcceeeeeeecccEEEEecCC
Q 036317           14 DANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL---------PVSHN--STLEASFSQHLSLVALSVLILRSWVLEGSGD   82 (106)
Q Consensus        14 ~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~---------~~~~~--~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d   82 (106)
                      .+..++|+|+|...++  .++.++-.+..+...         .+..+  ....+-|.|+|           ...+.  .|
T Consensus        42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G-----------~LYav--~d  106 (236)
T 1tl2_A           42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNG-----------YLYAV--SK  106 (236)
T ss_dssp             TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTS-----------CEEEE--ET
T ss_pred             cceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCC-----------CEEEe--CC
Confidence            6789999999996666  777777777644222         11111  13568899999           76555  55


Q ss_pred             CcEEEEECCC
Q 036317           83 GSVYAWSARS   92 (106)
Q Consensus        83 ~~i~~wd~~~   92 (106)
                      |.|+-++--+
T Consensus       107 G~iyr~~pP~  116 (236)
T 1tl2_A          107 DKLYKASPPQ  116 (236)
T ss_dssp             TEEEEESCCC
T ss_pred             CEEEEeCCCc
Confidence            8898887643

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=93.50  E-value=0.19  Score=38.40  Aligned_cols=52  Identities=19%  Similarity=0.248  Sum_probs=37.6

Q ss_pred             CeEEEEEcCCCce--ec-cCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEEECCCCCCC
Q 036317           34 GHIHVLHSFQGTL--PV-SHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSARSGKEP   96 (106)
Q Consensus        34 ~~i~l~d~~~~~~--~~-~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd~~~~~~v   96 (106)
                      +.+.-||..+|+.  .. .........+...+           ..|+.++.|+.++.||.++|+.+
T Consensus       438 g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~g-----------g~vf~g~~dg~l~a~d~~tG~~l  492 (668)
T 1kv9_A          438 GALLAWDPVKQKAAWKVPYPTHWNGGTLSTAG-----------NLVFQGTAAGQMHAYSADKGEAL  492 (668)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEETT-----------TEEEEECTTSEEEEEETTTCCEE
T ss_pred             ceEEEEeCCCCcEEEEccCCCCCcCceeEeCC-----------CEEEEECCcccchhhhhhcChhh
Confidence            7789999999987  11 11222223445567           78888999999999999999843

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=93.26  E-value=0.23  Score=34.37  Aligned_cols=26  Identities=12%  Similarity=0.130  Sum_probs=20.7

Q ss_pred             cEEEEecCCCcEEEEECCCCCCCcEE
Q 036317           74 SWVLEGSGDGSVYAWSARSGKEPPVI   99 (106)
Q Consensus        74 ~~i~t~s~d~~i~~wd~~~~~~v~~i   99 (106)
                      ..|+.++.+|.++++|.++|+.+...
T Consensus       319 ~~l~v~~~~g~l~~~d~~tG~~~~~~  344 (376)
T 3q7m_A          319 GNLVVGDSEGYLHWINVEDGRFVAQQ  344 (376)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEE
Confidence            56778888999999999999844333

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=92.82  E-value=1.1  Score=33.73  Aligned_cols=76  Identities=8%  Similarity=0.128  Sum_probs=51.0

Q ss_pred             eEEEECCCCCeEEEEeC--------------------C----CeEEEEEcCCCce----ec-cC--------CCcEEEEE
Q 036317           16 NEVKLSNDGRLMLLTTL--------------------E----GHIHVLHSFQGTL----PV-SH--------NSTLEASF   58 (106)
Q Consensus        16 ~~v~~spdg~~l~~~~~--------------------~----~~i~l~d~~~~~~----~~-~~--------~~~~~~~f   58 (106)
                      ..++++|+...+.+++.                    +    +.+.-+|..+|+.    +. ++        ....-+..
T Consensus       249 ~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~  328 (582)
T 1flg_A          249 QSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDY  328 (582)
T ss_dssp             SCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEE
T ss_pred             CCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEee
Confidence            45778888777766653                    2    5789999999988    11 11        11111222


Q ss_pred             e-cCCcceeeeeeeccc---EEEEecCCCcEEEEECCCCCCCcEEEeC
Q 036317           59 S-QHLSLVALSVLILRS---WVLEGSGDGSVYAWSARSGKEPPVIKWA  102 (106)
Q Consensus        59 s-~d~~~~~~~~~~~~~---~i~t~s~d~~i~~wd~~~~~~v~~i~~s  102 (106)
                      . .+|           +   .++.++.+|.++++|.++|+.+....+.
T Consensus       329 ~~~~G-----------~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~  365 (582)
T 1flg_A          329 KAKDG-----------KIVKATAHADRNGFFYVVDRSNGKLQNAFPFV  365 (582)
T ss_dssp             ECSSS-----------CEEEEEEEECTTSEEEEEETTTCCEEEEEESS
T ss_pred             ecCCC-----------CEEEEEEEECCCceEEEEECCCCCEecccccc
Confidence            2 466           4   6788999999999999999966555554

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=92.51  E-value=0.33  Score=36.92  Aligned_cols=54  Identities=17%  Similarity=0.178  Sum_probs=34.1

Q ss_pred             CCeEEEEEcCCCce--ecc-CCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEEECCCCCCCc
Q 036317           33 EGHIHVLHSFQGTL--PVS-HNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSARSGKEPP   97 (106)
Q Consensus        33 ~~~i~l~d~~~~~~--~~~-~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd~~~~~~v~   97 (106)
                      .+.+.-||..+|+.  ... ..+...-.....+           ..|..++.|+.++.+|.++|+.+.
T Consensus       452 ~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tag-----------g~vf~gt~dg~l~A~D~~tG~~lW  508 (599)
T 1w6s_A          452 LGQIKAYNAITGDYKWEKMERFAVWGGTMATAG-----------DLVFYGTLDGYLKARDSDTGDLLW  508 (599)
T ss_dssp             CEEEEEECTTTCCEEEEEEESSCCCSBCEEETT-----------TEEEEECTTSEEEEEETTTCCEEE
T ss_pred             cCeEEEEECCCCCEEeEecCCCCccCcceEecC-----------CEEEEECCCCeEEEEECCCCCEEE
Confidence            36777888888876  111 1111111123344           566778899999999999999433

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=92.30  E-value=1.8  Score=29.26  Aligned_cols=69  Identities=10%  Similarity=0.068  Sum_probs=42.4

Q ss_pred             CeeEEEECCCCCeEEEEeCC--CeEEEEEcCCCcee----ccC-CCcEEEEEecCCcceeeeeeecccEEEEecCCCcEE
Q 036317           14 DANEVKLSNDGRLMLLTTLE--GHIHVLHSFQGTLP----VSH-NSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVY   86 (106)
Q Consensus        14 ~v~~v~~spdg~~l~~~~~~--~~i~l~d~~~~~~~----~~~-~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~   86 (106)
                      ....++++++|+.+++....  ..+..+|..++++.    ... ......+..+++           ..+++-..++.|+
T Consensus        73 ~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~-----------~~~v~d~~~g~i~  141 (306)
T 2p4o_A           73 KVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDT-----------QYLTADSYRGAIW  141 (306)
T ss_dssp             EEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSS-----------EEEEEETTTTEEE
T ss_pred             CceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCC-----------cEEEEECCCCeEE
Confidence            57789999999966555433  24777787777761    111 122234445555           5455555678888


Q ss_pred             EEECCCC
Q 036317           87 AWSARSG   93 (106)
Q Consensus        87 ~wd~~~~   93 (106)
                      .+|..++
T Consensus       142 ~~d~~~~  148 (306)
T 2p4o_A          142 LIDVVQP  148 (306)
T ss_dssp             EEETTTT
T ss_pred             EEeCCCC
Confidence            8887643

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=91.78  E-value=0.78  Score=33.22  Aligned_cols=67  Identities=15%  Similarity=0.246  Sum_probs=45.1

Q ss_pred             CeeEEEECC-CCCeEEEEeCCCeEEEEEcCCCce-----e-ccCCCcEEEEEecCCcceeeeeeecccEE-EEecCCCcE
Q 036317           14 DANEVKLSN-DGRLMLLTTLEGHIHVLHSFQGTL-----P-VSHNSTLEASFSQHLSLVALSVLILRSWV-LEGSGDGSV   85 (106)
Q Consensus        14 ~v~~v~~sp-dg~~l~~~~~~~~i~l~d~~~~~~-----~-~~~~~~~~~~fs~d~~~~~~~~~~~~~~i-~t~s~d~~i   85 (106)
                      ....++++| +|..+++-..++.|+.+|..++..     . ........++|+|++           ++| ++-..++.|
T Consensus       229 ~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG-----------~~LYvad~~~~~I  297 (433)
T 4hw6_A          229 GAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTG-----------DWAYIIYNGKHCI  297 (433)
T ss_dssp             SBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTS-----------SEEEEEETTTTEE
T ss_pred             CCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCC-----------CEEEEEeCCCCEE
Confidence            456788999 677555656778899999887765     1 112223469999999           744 344456788


Q ss_pred             EEEECC
Q 036317           86 YAWSAR   91 (106)
Q Consensus        86 ~~wd~~   91 (106)
                      +.+++.
T Consensus       298 ~~~~~d  303 (433)
T 4hw6_A          298 YRVDYN  303 (433)
T ss_dssp             EEEEBC
T ss_pred             EEEeCC
Confidence            887765

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=91.77  E-value=2.3  Score=30.24  Aligned_cols=68  Identities=13%  Similarity=0.106  Sum_probs=50.3

Q ss_pred             CeeEEEECCCCCeEEEEeCC-CeEEEEEcCCCce-------eccCC--CcEEEEEecCCcceeeeeeecccEEEEecCCC
Q 036317           14 DANEVKLSNDGRLMLLTTLE-GHIHVLHSFQGTL-------PVSHN--STLEASFSQHLSLVALSVLILRSWVLEGSGDG   83 (106)
Q Consensus        14 ~v~~v~~spdg~~l~~~~~~-~~i~l~d~~~~~~-------~~~~~--~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~   83 (106)
                      ..+.++.+++|+..++.+.. +.|..++......       +....  ....++++|||           +.|+....++
T Consensus       138 ~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg-----------~~Liv~~~~g  206 (334)
T 2p9w_A          138 GVVQSAQDRDGNSYVAFALGMPAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHS-----------NKLIAFGGPR  206 (334)
T ss_dssp             EEEEEEECTTSCEEEEEEESSCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTT-----------TEEEEESSSS
T ss_pred             CCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeCCC-----------CEEEEEcCCC
Confidence            47899999999988888888 8888877653333       11111  13479999999           8777776688


Q ss_pred             cEEEEECCC
Q 036317           84 SVYAWSARS   92 (106)
Q Consensus        84 ~i~~wd~~~   92 (106)
                      .+..+|+.+
T Consensus       207 ~L~~fD~~~  215 (334)
T 2p9w_A          207 ALTAFDVSK  215 (334)
T ss_dssp             SEEEEECSS
T ss_pred             eEEEEcCCC
Confidence            999999873

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=91.70  E-value=0.85  Score=30.44  Aligned_cols=64  Identities=19%  Similarity=0.195  Sum_probs=39.3

Q ss_pred             CeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEEE
Q 036317           14 DANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWS   89 (106)
Q Consensus        14 ~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd   89 (106)
                      .+.++..+++|+ +.+++.++.+..+|.. ++.    ......+..+...+++           ...++.   +.++.+|
T Consensus       138 ~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g-----------~l~v~t---~~l~~~d  201 (330)
T 3hxj_A          138 IYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDG-----------TIYFGS---DKVYAIN  201 (330)
T ss_dssp             CCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTC-----------CEEEES---SSEEEEC
T ss_pred             eeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCC-----------EEEEEe---CEEEEEC
Confidence            456667777887 6667777889999987 655    1122233345556666           543333   5677777


Q ss_pred             CCCCC
Q 036317           90 ARSGK   94 (106)
Q Consensus        90 ~~~~~   94 (106)
                       .+++
T Consensus       202 -~~g~  205 (330)
T 3hxj_A          202 -PDGT  205 (330)
T ss_dssp             -TTSC
T ss_pred             -CCCc
Confidence             5554

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=91.59  E-value=1.7  Score=32.22  Aligned_cols=68  Identities=16%  Similarity=0.289  Sum_probs=46.7

Q ss_pred             CCCeeEEEECCC---CCeEEEEeCCCeEEEEEcCCCce-e----------c---cCCCcEEEEEecCCcceeeeeeeccc
Q 036317           12 VSDANEVKLSND---GRLMLLTTLEGHIHVLHSFQGTL-P----------V---SHNSTLEASFSQHLSLVALSVLILRS   74 (106)
Q Consensus        12 ~~~v~~v~~spd---g~~l~~~~~~~~i~l~d~~~~~~-~----------~---~~~~~~~~~fs~d~~~~~~~~~~~~~   74 (106)
                      ..+|..+.|+|-   |..+++-..|+.|++||+..... +          +   ....+.+++|+.++         .--
T Consensus       124 ~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~---------lTL  194 (452)
T 3pbp_A          124 KSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDG---------LTL  194 (452)
T ss_dssp             CCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTS---------SCE
T ss_pred             CCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCC---------cEE
Confidence            458999999996   45789999999999999875221 0          0   11345678888876         113


Q ss_pred             EEEEecCCCcEEEE
Q 036317           75 WVLEGSGDGSVYAW   88 (106)
Q Consensus        75 ~i~t~s~d~~i~~w   88 (106)
                      |+++.+++|.|+-.
T Consensus       195 Yvl~~t~~GDIYAl  208 (452)
T 3pbp_A          195 YCLNTTEGGDIFAF  208 (452)
T ss_dssp             EEEECTTSCEEEEE
T ss_pred             EEEecCCCCCEEEE
Confidence            45556677777643

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=91.53  E-value=2.5  Score=30.82  Aligned_cols=50  Identities=18%  Similarity=0.327  Sum_probs=33.1

Q ss_pred             CCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce------ec------cCCCcEEEEEecC
Q 036317           12 VSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL------PV------SHNSTLEASFSQH   61 (106)
Q Consensus        12 ~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~------~~------~~~~~~~~~fs~d   61 (106)
                      -.....++|.|||+.+++-...+.|.+++..+++.      ..      ....+..++|+||
T Consensus        26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pd   87 (454)
T 1cru_A           26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (454)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCC
Confidence            34677999999999555443335788888665654      10      1234567999995

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=90.98  E-value=2.9  Score=29.17  Aligned_cols=46  Identities=20%  Similarity=0.338  Sum_probs=33.3

Q ss_pred             CCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce------e---ccCCCcEEEEEecC
Q 036317           13 SDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL------P---VSHNSTLEASFSQH   61 (106)
Q Consensus        13 ~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~------~---~~~~~~~~~~fs~d   61 (106)
                      ..-..++|+|||+ ++++...+.|.+++  +++.      +   .....+..++|+||
T Consensus        31 ~~P~~ia~~pdG~-l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pd   85 (352)
T 2ism_A           31 EVPWALAFLPDGG-MLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPR   85 (352)
T ss_dssp             SCEEEEEECTTSC-EEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTT
T ss_pred             CCceEEEEcCCCe-EEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCC
Confidence            4667999999999 55666779999998  4443      1   11235677999998

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=90.80  E-value=1.4  Score=33.23  Aligned_cols=68  Identities=7%  Similarity=0.026  Sum_probs=46.5

Q ss_pred             eEEEECCCCCeEEEEe-CCCeEEEEEcCCCce----eccCCCc-EEEEEecCCcceeeeeeecccEEEEec-CC-----C
Q 036317           16 NEVKLSNDGRLMLLTT-LEGHIHVLHSFQGTL----PVSHNST-LEASFSQHLSLVALSVLILRSWVLEGS-GD-----G   83 (106)
Q Consensus        16 ~~v~~spdg~~l~~~~-~~~~i~l~d~~~~~~----~~~~~~~-~~~~fs~d~~~~~~~~~~~~~~i~t~s-~d-----~   83 (106)
                      ..+++.++|+.+++++ .+..+++||..+.+-    .....+. ..++..+++           +.++.|+ .+     .
T Consensus       246 ~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg-----------~iyv~GG~~~~~~~~~  314 (656)
T 1k3i_A          246 PGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDG-----------RVFTIGGSWSGGVFEK  314 (656)
T ss_dssp             CEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTS-----------CEEEECCCCCSSSCCC
T ss_pred             ccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCC-----------eEEEEeCcccCCcccc
Confidence            3467789999888887 456899999887765    1111221 234555788           7777776 33     5


Q ss_pred             cEEEEECCCCC
Q 036317           84 SVYAWSARSGK   94 (106)
Q Consensus        84 ~i~~wd~~~~~   94 (106)
                      .+.+||.++++
T Consensus       315 ~~e~yd~~t~~  325 (656)
T 1k3i_A          315 NGEVYSPSSKT  325 (656)
T ss_dssp             CEEEEETTTTE
T ss_pred             cceEeCCCCCc
Confidence            79999998765

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=90.06  E-value=1.9  Score=28.68  Aligned_cols=68  Identities=24%  Similarity=0.396  Sum_probs=40.8

Q ss_pred             CCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEE
Q 036317           12 VSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYA   87 (106)
Q Consensus        12 ~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~   87 (106)
                      ...+.++..+++|. +.+++.++.+..+|. +++.    .........+...+++           . |..++.++.++.
T Consensus       214 ~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~~g-----------~-l~v~t~~ggl~~  279 (330)
T 3hxj_A          214 YWTVTRPAISEDGT-IYVTSLDGHLYAINP-DGTEKWRFKTGKRIESSPVIGNTD-----------T-IYFGSYDGHLYA  279 (330)
T ss_dssp             SCCCSCCEECTTSC-EEEEETTTEEEEECT-TSCEEEEEECSSCCCSCCEECTTS-----------C-EEEECTTCEEEE
T ss_pred             CcceeceEECCCCe-EEEEcCCCeEEEECC-CCCEeEEeeCCCCccccceEcCCC-----------e-EEEecCCCCEEE
Confidence            34677888888887 555666777888875 4443    1111112224445555           3 455666777888


Q ss_pred             EECCCCC
Q 036317           88 WSARSGK   94 (106)
Q Consensus        88 wd~~~~~   94 (106)
                      +|. +++
T Consensus       280 ~d~-~g~  285 (330)
T 3hxj_A          280 INP-DGT  285 (330)
T ss_dssp             ECT-TSC
T ss_pred             ECC-CCc
Confidence            885 555

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=89.98  E-value=3.9  Score=31.08  Aligned_cols=79  Identities=15%  Similarity=0.088  Sum_probs=50.6

Q ss_pred             EEEECCCCCeEEEEeCC----------------CeEEEEEcCCCce----ec-cC--------CCcEEEEEe-cCCccee
Q 036317           17 EVKLSNDGRLMLLTTLE----------------GHIHVLHSFQGTL----PV-SH--------NSTLEASFS-QHLSLVA   66 (106)
Q Consensus        17 ~v~~spdg~~l~~~~~~----------------~~i~l~d~~~~~~----~~-~~--------~~~~~~~fs-~d~~~~~   66 (106)
                      ..+++++...+..++.+                ..+.-+|..+|+.    +. ++        ....-+... .+|+   
T Consensus       245 ~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~---  321 (599)
T 1w6s_A          245 WYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGK---  321 (599)
T ss_dssp             CCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSC---
T ss_pred             ceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCc---
Confidence            45677777777776654                3788899999988    11 11        111112222 4560   


Q ss_pred             eeeeecccEEEEecCCCcEEEEECCCCCCCcEEEeCC
Q 036317           67 LSVLILRSWVLEGSGDGSVYAWSARSGKEPPVIKWAP  103 (106)
Q Consensus        67 ~~~~~~~~~i~t~s~d~~i~~wd~~~~~~v~~i~~sp  103 (106)
                           .++.++.++.+|.+++.|.++|+.+....+.|
T Consensus       322 -----~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~  353 (599)
T 1w6s_A          322 -----ARKLLTHPDRNGIVYTLDRTDGALVSANKLDD  353 (599)
T ss_dssp             -----EEEEEEEECTTSEEEEEETTTCCEEEEEESST
T ss_pred             -----EEEEEEEECCCcEEEEEECCCCCEeecccccC
Confidence                 00256778899999999999999666665543

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=89.91  E-value=2.5  Score=33.85  Aligned_cols=33  Identities=9%  Similarity=0.114  Sum_probs=29.8

Q ss_pred             CeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce
Q 036317           14 DANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL   46 (106)
Q Consensus        14 ~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~   46 (106)
                      .+.++...++..++.+.+.|+++++|++.+++.
T Consensus       237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~  269 (950)
T 4gq2_M          237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQC  269 (950)
T ss_dssp             CEEEEEEETTTTEEEEEETTCEEEEEETTTTEE
T ss_pred             eEEEEeecCCCcEEEEEECCCEEEEEECCCCCe
Confidence            577888888999999999999999999999876

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=89.57  E-value=3.8  Score=29.59  Aligned_cols=70  Identities=9%  Similarity=0.139  Sum_probs=39.7

Q ss_pred             CCeeEEEECCCCCeEEEEeCC-----CeEEEEEcCCCce----eccCCCcEEEEEec-CCcceeeeeeecccEEEEecCC
Q 036317           13 SDANEVKLSNDGRLMLLTTLE-----GHIHVLHSFQGTL----PVSHNSTLEASFSQ-HLSLVALSVLILRSWVLEGSGD   82 (106)
Q Consensus        13 ~~v~~v~~spdg~~l~~~~~~-----~~i~l~d~~~~~~----~~~~~~~~~~~fs~-d~~~~~~~~~~~~~~i~t~s~d   82 (106)
                      .....++++++|+ |.++...     ..+..++...+..    ......+..++++| ++           ...++-..+
T Consensus       182 ~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~~~~~P~giavd~~~G-----------~lyv~d~~~  249 (433)
T 4hw6_A          182 GQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASGFTERLSLCNARGAKTCAVHPQNG-----------KIYYTRYHH  249 (433)
T ss_dssp             SCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGTTCCEEEEEECSSBCCCEECTTTC-----------CEEECBTTC
T ss_pred             CCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCCeeccccccccCCCCEEEEeCCCC-----------eEEEEECCC
Confidence            4688999999999 5555432     1233334322211    11122344577788 56           544455556


Q ss_pred             CcEEEEECCCCC
Q 036317           83 GSVYAWSARSGK   94 (106)
Q Consensus        83 ~~i~~wd~~~~~   94 (106)
                      +.|+.+|..+++
T Consensus       250 ~~V~~~d~~~g~  261 (433)
T 4hw6_A          250 AMISSYDPATGT  261 (433)
T ss_dssp             SEEEEECTTTCC
T ss_pred             CEEEEEECCCCe
Confidence            677777776554

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=88.11  E-value=4.9  Score=30.07  Aligned_cols=76  Identities=13%  Similarity=0.022  Sum_probs=49.5

Q ss_pred             EEEECCCCCeEEEEeCC----------------CeEEEEEcCCCce----ec-cC--------CCcEEEEEecCCcceee
Q 036317           17 EVKLSNDGRLMLLTTLE----------------GHIHVLHSFQGTL----PV-SH--------NSTLEASFSQHLSLVAL   67 (106)
Q Consensus        17 ~v~~spdg~~l~~~~~~----------------~~i~l~d~~~~~~----~~-~~--------~~~~~~~fs~d~~~~~~   67 (106)
                      .++++++...+..++.+                +.+..+|..+|+.    +. .+        ..+.-+...++|     
T Consensus       239 ~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G-----  313 (571)
T 2ad6_A          239 WYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNG-----  313 (571)
T ss_dssp             CCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETT-----
T ss_pred             eEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCC-----
Confidence            46677776666665532                3588899999987    11 11        122223333577     


Q ss_pred             eeeeccc---EEEEecCCCcEEEEECCCCCCCcEEEeCC
Q 036317           68 SVLILRS---WVLEGSGDGSVYAWSARSGKEPPVIKWAP  103 (106)
Q Consensus        68 ~~~~~~~---~i~t~s~d~~i~~wd~~~~~~v~~i~~sp  103 (106)
                            +   .++.++.+|.+++.|.++|+.+....+.+
T Consensus       314 ------~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~  346 (571)
T 2ad6_A          314 ------KMTPLLSHIDRNGILYTLNRENGNLIVAEKVDP  346 (571)
T ss_dssp             ------EEEEEEEEECTTSEEEEEETTTCCEEEEEESST
T ss_pred             ------cEEEEEEEeCCCcEEEEEECCCCCEEeeecccC
Confidence                  5   46778899999999999999665555543

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=88.04  E-value=4.5  Score=32.41  Aligned_cols=21  Identities=10%  Similarity=-0.065  Sum_probs=20.1

Q ss_pred             cEEEEecCCCcEEEEECCCCC
Q 036317           74 SWVLEGSGDGSVYAWSARSGK   94 (106)
Q Consensus        74 ~~i~t~s~d~~i~~wd~~~~~   94 (106)
                      .++.+-+.|+++++|++.+|+
T Consensus       248 ~~lftl~~D~~LRiWsl~t~~  268 (950)
T 4gq2_M          248 NVLVMLSLDYKLKVLDLSTNQ  268 (950)
T ss_dssp             TEEEEEETTCEEEEEETTTTE
T ss_pred             cEEEEEECCCEEEEEECCCCC
Confidence            899999999999999999997

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=87.80  E-value=2.3  Score=32.52  Aligned_cols=55  Identities=16%  Similarity=0.218  Sum_probs=35.2

Q ss_pred             CeeEEEECCCCCeEEEEeCC------------CeEEEEEcCCCce----eccC-CCcEEEEEecCCcceeee
Q 036317           14 DANEVKLSNDGRLMLLTTLE------------GHIHVLHSFQGTL----PVSH-NSTLEASFSQHLSLVALS   68 (106)
Q Consensus        14 ~v~~v~~spdg~~l~~~~~~------------~~i~l~d~~~~~~----~~~~-~~~~~~~fs~d~~~~~~~   68 (106)
                      ..-.|.|+|+|+.++..-.+            +.+.+.+..++++    .... ..++.++|+||++.|+++
T Consensus       477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn  548 (592)
T 3zwu_A          477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG  548 (592)
T ss_dssp             CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred             CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence            34689999999944443221            3455667777776    2222 345679999999655543

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=87.26  E-value=4.2  Score=28.47  Aligned_cols=48  Identities=19%  Similarity=0.268  Sum_probs=33.7

Q ss_pred             CCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCc-e----e---ccCCCcEEEEEecC
Q 036317           12 VSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGT-L----P---VSHNSTLEASFSQH   61 (106)
Q Consensus        12 ~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~-~----~---~~~~~~~~~~fs~d   61 (106)
                      -.....++|.|||+ ++++..++.|+++| .+++ .    +   .....+..++++|+
T Consensus        28 l~~P~~ia~~pdG~-l~V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pd   83 (354)
T 3a9g_A           28 LEVPWSIAPLGGGR-YLVTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPE   83 (354)
T ss_dssp             CSCEEEEEEEETTE-EEEEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTT
T ss_pred             CCCCeEEEEcCCCe-EEEEeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCC
Confidence            34678999999998 66666779999987 3444 1    1   11234677999998

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=86.60  E-value=4.7  Score=32.84  Aligned_cols=21  Identities=10%  Similarity=-0.065  Sum_probs=20.2

Q ss_pred             cEEEEecCCCcEEEEECCCCC
Q 036317           74 SWVLEGSGDGSVYAWSARSGK   94 (106)
Q Consensus        74 ~~i~t~s~d~~i~~wd~~~~~   94 (106)
                      .++.+-+.|+++++|++.+++
T Consensus       250 ~~lftL~~D~~LRiWsl~t~~  270 (1139)
T 4fhn_B          250 NVLVMLSLDYKLKVLDLSTNQ  270 (1139)
T ss_dssp             TEEEEEBTTCEEEEEETTTTE
T ss_pred             cEEEEEeCCCEEEEEECCCCC
Confidence            899999999999999999997

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=86.56  E-value=4.6  Score=31.18  Aligned_cols=68  Identities=15%  Similarity=0.148  Sum_probs=48.1

Q ss_pred             CeeEEEECCCCCeEEEEe-CCCeEEEEEcCCC------ce---------eccC-CCcEEEEEecCCcceeeeeeecccEE
Q 036317           14 DANEVKLSNDGRLMLLTT-LEGHIHVLHSFQG------TL---------PVSH-NSTLEASFSQHLSLVALSVLILRSWV   76 (106)
Q Consensus        14 ~v~~v~~spdg~~l~~~~-~~~~i~l~d~~~~------~~---------~~~~-~~~~~~~fs~d~~~~~~~~~~~~~~i   76 (106)
                      ....+.++|||+|+++++ -+.++.++|...-      ++         ...- -.+....|.++|           .-.
T Consensus       324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G-----------~aY  392 (638)
T 3sbq_A          324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRG-----------NAY  392 (638)
T ss_dssp             SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSS-----------EEE
T ss_pred             CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCC-----------ceE
Confidence            445788999999998776 5688999997631      11         1111 134668999999           655


Q ss_pred             EEecCCCcEEEEECCC
Q 036317           77 LEGSGDGSVYAWSARS   92 (106)
Q Consensus        77 ~t~s~d~~i~~wd~~~   92 (106)
                      .|-.-|.+|.-|+++.
T Consensus       393 TtlfidSqvvkWni~~  408 (638)
T 3sbq_A          393 TTLFIDSQVVKWNMEE  408 (638)
T ss_dssp             EEETTTTEEEEEEHHH
T ss_pred             eeeeecceEEEEeccH
Confidence            5666788899998865

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=86.32  E-value=2.8  Score=29.86  Aligned_cols=66  Identities=5%  Similarity=0.008  Sum_probs=42.5

Q ss_pred             CCeeEEEECCCCCeEEEEeC-----------------CCeEEEEEcCCCce---eccCCCcEEEEEecCCcceeeeeeec
Q 036317           13 SDANEVKLSNDGRLMLLTTL-----------------EGHIHVLHSFQGTL---PVSHNSTLEASFSQHLSLVALSVLIL   72 (106)
Q Consensus        13 ~~v~~v~~spdg~~l~~~~~-----------------~~~i~l~d~~~~~~---~~~~~~~~~~~fs~d~~~~~~~~~~~   72 (106)
                      ...+++.+.++|.++++...                 .+.+.-+|.  ++.   ...-.....++||||+          
T Consensus       165 ~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~~~~~~~~l~~pNGia~spDg----------  232 (355)
T 3sre_A          165 PSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--NDVRVVAEGFDFANGINISPDG----------  232 (355)
T ss_dssp             SSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TCCEEEEEEESSEEEEEECTTS----------
T ss_pred             CCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--CeEEEeecCCcccCcceECCCC----------
Confidence            36889999999997776541                 234555554  333   1122345679999999          


Q ss_pred             ccEEEEe-cCCCcEEEEECC
Q 036317           73 RSWVLEG-SGDGSVYAWSAR   91 (106)
Q Consensus        73 ~~~i~t~-s~d~~i~~wd~~   91 (106)
                       +++..+ +..+.|+.|++.
T Consensus       233 -~~lYvadt~~~~I~~~~~~  251 (355)
T 3sre_A          233 -KYVYIAELLAHKIHVYEKH  251 (355)
T ss_dssp             -SEEEEEEGGGTEEEEEEEC
T ss_pred             -CEEEEEeCCCCeEEEEEEC
Confidence             665544 345688888876

>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*

Probab=85.37  E-value=4.2  Score=31.22  Aligned_cols=56  Identities=16%  Similarity=0.219  Sum_probs=37.4

Q ss_pred             CCeeEEEECCCCCeEEEEeC------------CCeEEEEEcCCCcee----cc-CCCcEEEEEecCCcceeee
Q 036317           13 SDANEVKLSNDGRLMLLTTL------------EGHIHVLHSFQGTLP----VS-HNSTLEASFSQHLSLVALS   68 (106)
Q Consensus        13 ~~v~~v~~spdg~~l~~~~~------------~~~i~l~d~~~~~~~----~~-~~~~~~~~fs~d~~~~~~~   68 (106)
                      .....|.|+++|...+..-.            ...+..++..++++.    .. ...++.++|+||++.|.++
T Consensus       476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~  548 (592)
T 4a9v_A          476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG  548 (592)
T ss_dssp             CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred             CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEE
Confidence            36679999999996664422            125677777778771    11 2245789999999555543

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=85.19  E-value=4  Score=28.53  Aligned_cols=48  Identities=17%  Similarity=0.246  Sum_probs=33.2

Q ss_pred             CCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce-------e----ccCCCcEEEEEecC
Q 036317           13 SDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL-------P----VSHNSTLEASFSQH   61 (106)
Q Consensus        13 ~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~-------~----~~~~~~~~~~fs~d   61 (106)
                      .....|+|.|||++++++...+.|++++. ++..       +    ........++++|+
T Consensus        18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~-~g~~~~~~~~~~~v~~~g~~g~~gia~~pd   76 (353)
T 2g8s_A           18 DHPWALAFLPDNHGMLITLRGGELRHWQA-GKGLSAPLSGVPDVWAHGQGGLLDVVLAPD   76 (353)
T ss_dssp             SSEEEEEECSTTCCEEEEETTTEEEEEET-TTEECCCCBSCCCCCCSTTCSEEEEEECTT
T ss_pred             CCcEEEEEcCCCCEEEEEeCCceEEEEeC-CCceeeEecCCcccccCCCCCceeEEECCC
Confidence            36679999999995666667899999985 3332       1    11223467899996

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=84.39  E-value=8.5  Score=27.27  Aligned_cols=49  Identities=14%  Similarity=0.143  Sum_probs=34.2

Q ss_pred             CCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCcee----------ccCCCcEEEEEecC
Q 036317           13 SDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTLP----------VSHNSTLEASFSQH   61 (106)
Q Consensus        13 ~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~~----------~~~~~~~~~~fs~d   61 (106)
                      ..-..++|.|||+.+++--..+.|++++..+++..          ........++|+||
T Consensus        32 ~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pd   90 (347)
T 3das_A           32 NSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPD   90 (347)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTT
T ss_pred             CCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccc
Confidence            46779999999994444434899999987666541          12334567999986

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=84.24  E-value=6  Score=29.55  Aligned_cols=66  Identities=6%  Similarity=-0.015  Sum_probs=41.9

Q ss_pred             CeeEEEECCCCCeE-EEEeCCCeEEEEEcC-------CCce-----------------eccCCCcEEEEEecCCcceeee
Q 036317           14 DANEVKLSNDGRLM-LLTTLEGHIHVLHSF-------QGTL-----------------PVSHNSTLEASFSQHLSLVALS   68 (106)
Q Consensus        14 ~v~~v~~spdg~~l-~~~~~~~~i~l~d~~-------~~~~-----------------~~~~~~~~~~~fs~d~~~~~~~   68 (106)
                      ....++++|++.+| ++-..++.+..+|..       ++..                 .........++|+|+|      
T Consensus       248 ~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G------  321 (496)
T 3kya_A          248 QCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTG------  321 (496)
T ss_dssp             CCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTS------
T ss_pred             CceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCC------
Confidence            35678899955445 555677889999987       5543                 0112345679999999      


Q ss_pred             eeecccEEE-EecCCCcEEEEEC
Q 036317           69 VLILRSWVL-EGSGDGSVYAWSA   90 (106)
Q Consensus        69 ~~~~~~~i~-t~s~d~~i~~wd~   90 (106)
                           +++. +=..+..|+.++.
T Consensus       322 -----~~lYvaD~~~h~I~kid~  339 (496)
T 3kya_A          322 -----KYAYFGVINNHYFMRSDY  339 (496)
T ss_dssp             -----SEEEEEETTTTEEEEEEE
T ss_pred             -----CEEEEEeCCCCEEEEEec
Confidence                 7433 3344556777543

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=83.62  E-value=4.4  Score=28.83  Aligned_cols=49  Identities=24%  Similarity=0.240  Sum_probs=32.9

Q ss_pred             CeeEEEECCCCCeEEEE-eCCCeEEEEEcC-CCceec-----cCCCcEEEEEec-CC
Q 036317           14 DANEVKLSNDGRLMLLT-TLEGHIHVLHSF-QGTLPV-----SHNSTLEASFSQ-HL   62 (106)
Q Consensus        14 ~v~~v~~spdg~~l~~~-~~~~~i~l~d~~-~~~~~~-----~~~~~~~~~fs~-d~   62 (106)
                      .-+.++|||||+.+..+ +..+.|+.|+.. ++++..     ..+.+-.++..+ +|
T Consensus       222 ~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~~g~PDGi~vD~e~G  278 (355)
T 3sre_A          222 FANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTG  278 (355)
T ss_dssp             SEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTC
T ss_pred             ccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEeCCCCCceEEEeCCCC
Confidence            56789999999888665 467899999975 344411     122334567777 47

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=83.50  E-value=13  Score=28.46  Aligned_cols=70  Identities=14%  Similarity=0.213  Sum_probs=48.0

Q ss_pred             CCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCceec------------cCCCcEEEEEecCCcceeeeeeecccEEEEec
Q 036317           13 SDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTLPV------------SHNSTLEASFSQHLSLVALSVLILRSWVLEGS   80 (106)
Q Consensus        13 ~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~~~------------~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s   80 (106)
                      ..|.++..+++|+ +-+++.++-+..+|..+++...            ....+.++...+++           +.|..|.
T Consensus       357 ~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g-----------~~lWigt  424 (795)
T 4a2l_A          357 NVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKK-----------SLVYIGT  424 (795)
T ss_dssp             SSEEEEEECTTSC-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTT-----------TEEEEEE
T ss_pred             CeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCC-----------CEEEEEe
Confidence            3699999999998 5556777778889988776511            12345566777888           6344455


Q ss_pred             CCCcEEEEECCCCC
Q 036317           81 GDGSVYAWSARSGK   94 (106)
Q Consensus        81 ~d~~i~~wd~~~~~   94 (106)
                      .++-+..+|.++++
T Consensus       425 ~~~Gl~~~d~~~~~  438 (795)
T 4a2l_A          425 HAGGLSILHRNSGQ  438 (795)
T ss_dssp             TTTEEEEEETTTCC
T ss_pred             CcCceeEEeCCCCc
Confidence            55558888877654

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=82.32  E-value=11  Score=26.73  Aligned_cols=86  Identities=8%  Similarity=0.005  Sum_probs=54.7

Q ss_pred             eeecCCCCCCeeEEEECC-CCCeEEEEeCCCeEEEEEcCCCce-----ec----cCC--CcEEEEE---ecCCcceeeee
Q 036317            5 IFSDGGDVSDANEVKLSN-DGRLMLLTTLEGHIHVLHSFQGTL-----PV----SHN--STLEASF---SQHLSLVALSV   69 (106)
Q Consensus         5 ~~~~~~~~~~v~~v~~sp-dg~~l~~~~~~~~i~l~d~~~~~~-----~~----~~~--~~~~~~f---s~d~~~~~~~~   69 (106)
                      .+.+.....--.+.+|++ +|.++++....++|..||...+..     +.    ...  ....+.+   .|++       
T Consensus         5 ~i~~~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~g-------   77 (334)
T 2p9w_A            5 QIDVKVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSK-------   77 (334)
T ss_dssp             EEEECCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCC-------
T ss_pred             eEEecCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCC-------
Confidence            344554455667889987 555555555899999999876543     11    111  1246888   6888       


Q ss_pred             eecccEEEEec-------------CCCcEEEEECC---CCCCCcEEEe
Q 036317           70 LILRSWVLEGS-------------GDGSVYAWSAR---SGKEPPVIKW  101 (106)
Q Consensus        70 ~~~~~~i~t~s-------------~d~~i~~wd~~---~~~~v~~i~~  101 (106)
                          +.++...             .+..+..+|+.   +++.+..+..
T Consensus        78 ----rL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL  121 (334)
T 2p9w_A           78 ----RLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNF  121 (334)
T ss_dssp             ----EEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEES
T ss_pred             ----cEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecC
Confidence                5544322             36789999999   8886555443

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=82.19  E-value=15  Score=28.16  Aligned_cols=69  Identities=12%  Similarity=0.160  Sum_probs=46.6

Q ss_pred             CCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCceec--------cCCCcEEEEEecCCcceeeeeeecccEEEEecCCCc
Q 036317           13 SDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTLPV--------SHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGS   84 (106)
Q Consensus        13 ~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~~~--------~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~   84 (106)
                      ..|.++..+++|+.+.+++.++.+..+|..+++...        ....+.++...++|           +..++.. + -
T Consensus       406 ~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g-----------~lwigt~-~-G  472 (795)
T 4a2l_A          406 NNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEG-----------NLWLGTL-S-A  472 (795)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSS-----------CEEEEES-S-C
T ss_pred             ccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCC-----------CEEEEec-C-c
Confidence            478899999999856667777779999998887611        12345566677777           5444333 3 3


Q ss_pred             EEEEECCCCC
Q 036317           85 VYAWSARSGK   94 (106)
Q Consensus        85 i~~wd~~~~~   94 (106)
                      +.+||.++++
T Consensus       473 l~~~~~~~~~  482 (795)
T 4a2l_A          473 LVRFNPEQRS  482 (795)
T ss_dssp             EEEEETTTTE
T ss_pred             eeEEeCCCCe
Confidence            7778776543

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=82.09  E-value=6  Score=29.53  Aligned_cols=49  Identities=10%  Similarity=0.179  Sum_probs=34.1

Q ss_pred             CeeEEEECC-CCCeEEEE-eCCCeEEEEEcCCCce----ec---cCCCcEEEEE-------ecCC
Q 036317           14 DANEVKLSN-DGRLMLLT-TLEGHIHVLHSFQGTL----PV---SHNSTLEASF-------SQHL   62 (106)
Q Consensus        14 ~v~~v~~sp-dg~~l~~~-~~~~~i~l~d~~~~~~----~~---~~~~~~~~~f-------s~d~   62 (106)
                      ....|+|+| ++..|.++ ...+.|+++|..++++    ..   ....+..++|       ++++
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G  204 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEA  204 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTT
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCC
Confidence            567999999 34445444 4457889999988887    11   1224677999       9999

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=81.91  E-value=11  Score=26.20  Aligned_cols=80  Identities=9%  Similarity=-0.069  Sum_probs=48.2

Q ss_pred             CeeEEEECCCCCeE-EEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEE-EecCC-CcEE
Q 036317           14 DANEVKLSNDGRLM-LLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVL-EGSGD-GSVY   86 (106)
Q Consensus        14 ~v~~v~~spdg~~l-~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~-t~s~d-~~i~   86 (106)
                      ....+++++.+..| .+-...+.|.+.+......    ......+..++++|++           .+|. +-..+ +.|+
T Consensus       117 ~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~-----------g~ly~td~~~~~~I~  185 (349)
T 3v64_C          117 SPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPME-----------GTIYWTDWGNTPRIE  185 (349)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTT-----------TEEEEEECSSSCEEE
T ss_pred             CccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCc-----------CeEEEeccCCCCEEE
Confidence            45678888765545 4445667888888754332    1223456778999866           4333 33333 6777


Q ss_pred             EEECCCCC----------CCcEEEeCCC
Q 036317           87 AWSARSGK----------EPPVIKWAPG  104 (106)
Q Consensus        87 ~wd~~~~~----------~v~~i~~sp~  104 (106)
                      ..++....          .++.|+++|.
T Consensus       186 r~~~dG~~~~~~~~~~~~~PnGla~d~~  213 (349)
T 3v64_C          186 ASSMDGSGRRIIADTHLFWPNGLTIDYA  213 (349)
T ss_dssp             EEETTSCSCEESCCSSCSCEEEEEEETT
T ss_pred             EEeCCCCCcEEEEECCCCCcceEEEeCC
Confidence            77765322          4567777763

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=81.60  E-value=11  Score=26.40  Aligned_cols=68  Identities=9%  Similarity=-0.002  Sum_probs=39.5

Q ss_pred             CeeEEEECCCCCeEE-EEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEE
Q 036317           14 DANEVKLSNDGRLML-LTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAW   88 (106)
Q Consensus        14 ~v~~v~~spdg~~l~-~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~w   88 (106)
                      ....++|++.+..|. +-...+.|+.++......    ......+..+++++.+.          ...++-...+.|.+.
T Consensus       117 ~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g----------~lY~~d~~~~~I~~~  186 (386)
T 3v65_B          117 NAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHD----------KLYWTDSGTSRIEVA  186 (386)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTT----------EEEEEETTTTEEEEC
T ss_pred             ccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCC----------eEEEEcCCCCeEEEE
Confidence            567788987655554 445668888888766543    11222344577776541          333344445566666


Q ss_pred             ECC
Q 036317           89 SAR   91 (106)
Q Consensus        89 d~~   91 (106)
                      ++.
T Consensus       187 ~~d  189 (386)
T 3v65_B          187 NLD  189 (386)
T ss_dssp             BTT
T ss_pred             eCC
Confidence            665

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=80.11  E-value=12  Score=25.84  Aligned_cols=80  Identities=11%  Similarity=0.091  Sum_probs=48.0

Q ss_pred             CeeEEEECCCCCeEEEE-eCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEE
Q 036317           14 DANEVKLSNDGRLMLLT-TLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAW   88 (106)
Q Consensus        14 ~v~~v~~spdg~~l~~~-~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~w   88 (106)
                      ....++|++.++.|..+ ...+.|+.++......    ......+..+++.+.+.          +..++-...+.|.+.
T Consensus        74 ~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g----------~ly~~d~~~~~I~~~  143 (349)
T 3v64_C           74 NAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHD----------KLYWTDSGTSRIEVA  143 (349)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTT----------EEEEEETTTTEEEEE
T ss_pred             ceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCC----------eEEEEcCCCCeEEEE
Confidence            46788888765555544 4667888888765543    11223445678887540          333444555677777


Q ss_pred             ECCCCC----------CCcEEEeCC
Q 036317           89 SARSGK----------EPPVIKWAP  103 (106)
Q Consensus        89 d~~~~~----------~v~~i~~sp  103 (106)
                      +++...          .++.++++|
T Consensus       144 ~~dG~~~~~l~~~~l~~P~~iavdp  168 (349)
T 3v64_C          144 NLDGAHRKVLLWQSLEKPRAIALHP  168 (349)
T ss_dssp             ETTSCSCEEEECTTCSCEEEEEEET
T ss_pred             cCCCCceEEEEeCCCCCcceEEEec
Confidence            776432          455666665

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	106
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.68
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.68
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.65
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.65
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.62
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.61
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.61
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.59
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.58
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.57
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.57
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.56
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.56
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.55
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.55
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.53
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.53
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.52
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.51
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.4
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.4
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.37
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.3
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.3
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.29
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.29
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.28
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.22
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.21
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.21
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.14
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.08
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.06
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.06
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.0
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	98.99
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	98.99
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	98.98
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	98.98
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	98.94
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	98.92
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	98.87
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	98.82
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	98.79
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	98.64
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	98.62
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	98.6
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	98.51
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	98.36
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	98.15
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.11
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.83
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	97.72
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	97.66
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	97.65
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	97.06
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	96.97
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	96.96
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	96.93
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	96.85
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	96.83
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	96.8
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	96.71
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	96.58
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	96.36
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	96.36
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	96.18
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	96.13
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	95.97
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	95.55
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	94.3
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	93.76
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	92.48
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	92.21
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	91.64
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	90.72
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	89.84
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	89.81
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	89.09
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	89.04
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	88.4
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	86.51
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	85.9
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	84.31
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	83.24
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	83.18
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	82.33
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	82.19
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	81.09

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.68  E-value=7.2e-16  Score=101.81  Aligned_cols=101  Identities=16%  Similarity=0.200  Sum_probs=84.4

Q ss_pred             eeeecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeee----------
Q 036317            4 DIFSDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSV----------   69 (106)
Q Consensus         4 ~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~----------   69 (106)
                      ..+.+.||.+.|++++|+|+++++++++.|++|+|||..+++.    ..+...+..+.|+|++.+++...          
T Consensus         9 ~~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (317)
T d1vyhc1           9 EKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDF   88 (317)
T ss_dssp             CSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEET
T ss_pred             ccEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeecccccccccccccccccccc
Confidence            4567889999999999999999999999999999999998877    44667788899999998887321          


Q ss_pred             ---------------------eecccEEEEecCCCcEEEEECCCCC----------CCcEEEeCCC
Q 036317           70 ---------------------LILRSWVLEGSGDGSVYAWSARSGK----------EPPVIKWAPG  104 (106)
Q Consensus        70 ---------------------~~~~~~i~t~s~d~~i~~wd~~~~~----------~v~~i~~sp~  104 (106)
                                           .....++++++.|+.+++||+++++          .+.+++|+|+
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (317)
T d1vyhc1          89 QGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQD  154 (317)
T ss_dssp             TSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTT
T ss_pred             cccccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccC
Confidence                                 2223678999999999999999887          6677788775

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.68  E-value=1.3e-16  Score=111.19  Aligned_cols=81  Identities=10%  Similarity=0.279  Sum_probs=73.0

Q ss_pred             CCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce------eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEE
Q 036317           13 SDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL------PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVY   86 (106)
Q Consensus        13 ~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~------~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~   86 (106)
                      .+|++++|+|||+++++++.++.|++||..+++.      ..|.+.+.++.|+|++           ++|++++.|++|+
T Consensus         8 ~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~-----------~~l~s~s~D~~i~   76 (371)
T d1k8kc_           8 EPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDS-----------NRIVTCGTDRNAY   76 (371)
T ss_dssp             SCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTT-----------TEEEEEETTSCEE
T ss_pred             CCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCC-----------CEEEEEECCCeEE
Confidence            4899999999999999999999999999987764      4567788899999999           9999999999999


Q ss_pred             EEECCCCC------------CCcEEEeCCC
Q 036317           87 AWSARSGK------------EPPVIKWAPG  104 (106)
Q Consensus        87 ~wd~~~~~------------~v~~i~~sp~  104 (106)
                      +||+++++            .|.+++|+|+
T Consensus        77 vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~  106 (371)
T d1k8kc_          77 VWTLKGRTWKPTLVILRINRAARCVRWAPN  106 (371)
T ss_dssp             EEEEETTEEEEEEECCCCSSCEEEEEECTT
T ss_pred             EEeecccccccccccccccccccccccccc
Confidence            99998764            6899999986

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.65  E-value=3e-16  Score=109.98  Aligned_cols=78  Identities=15%  Similarity=0.201  Sum_probs=67.5

Q ss_pred             CCCCCCeeEEEECCCCCeEEEEeCCC---eEEEEEcCCCce-----------------eccCCCcEEEEEecCCcceeee
Q 036317            9 GGDVSDANEVKLSNDGRLMLLTTLEG---HIHVLHSFQGTL-----------------PVSHNSTLEASFSQHLSLVALS   68 (106)
Q Consensus         9 ~~~~~~v~~v~~spdg~~l~~~~~~~---~i~l~d~~~~~~-----------------~~~~~~~~~~~fs~d~~~~~~~   68 (106)
                      .+|...|++++|+|||++|++++.|+   .+++||+.+++.                 .+|.+.+.+++|+||+      
T Consensus       228 ~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~------  301 (393)
T d1sq9a_         228 INNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSG------  301 (393)
T ss_dssp             -CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSS------
T ss_pred             ccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCC------
Confidence            45677999999999999999999886   489999988765                 2466778999999999      


Q ss_pred             eeecccEEEEecCCCcEEEEECCCCCCCc
Q 036317           69 VLILRSWVLEGSGDGSVYAWSARSGKEPP   97 (106)
Q Consensus        69 ~~~~~~~i~t~s~d~~i~~wd~~~~~~v~   97 (106)
                           ++|+||+.|++|++||+++|+.+.
T Consensus       302 -----~~l~S~s~D~~v~vWd~~~g~~~~  325 (393)
T d1sq9a_         302 -----ETLCSAGWDGKLRFWDVKTKERIT  325 (393)
T ss_dssp             -----SEEEEEETTSEEEEEETTTTEEEE
T ss_pred             -----CeeEEECCCCEEEEEECCCCCEEE
Confidence                 999999999999999999997333

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.65  E-value=1.9e-15  Score=101.42  Aligned_cols=87  Identities=15%  Similarity=0.127  Sum_probs=76.2

Q ss_pred             ecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce------eccCCCcEEEEEecCCcceeeeeeecccEEEEec
Q 036317            7 SDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL------PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGS   80 (106)
Q Consensus         7 ~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~------~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s   80 (106)
                      .+.++.+.|++++|+|+|+++++++.|+.+++||......      ..+...+..+.|+|++           ++|++|+
T Consensus       221 ~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-----------~~l~~g~  289 (340)
T d1tbga_         221 TFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSG-----------RLLLAGY  289 (340)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSS-----------CEEEEEE
T ss_pred             EEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCCC-----------CEEEEEE
Confidence            4456778999999999999999999999999999987765      2234456789999999           9999999


Q ss_pred             CCCcEEEEECCCCC----------CCcEEEeCCC
Q 036317           81 GDGSVYAWSARSGK----------EPPVIKWAPG  104 (106)
Q Consensus        81 ~d~~i~~wd~~~~~----------~v~~i~~sp~  104 (106)
                      .||.|++||+.+++          .|.+++|+|+
T Consensus       290 ~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d  323 (340)
T d1tbga_         290 DDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDD  323 (340)
T ss_dssp             TTSCEEEEETTTCCEEEEECCCSSCEEEEEECTT
T ss_pred             CCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCC
Confidence            99999999999987          8899999986

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=2.7e-15  Score=102.91  Aligned_cols=83  Identities=12%  Similarity=0.091  Sum_probs=69.7

Q ss_pred             CCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce---------eccCCCcEEEEEecCCcceeeeeeecccEEEEec
Q 036317           10 GDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL---------PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGS   80 (106)
Q Consensus        10 ~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~---------~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s   80 (106)
                      .|...|.+++|||+|++|++++ |+.|+|||+.++..         ..+.+.+.+++|+||+           ++|++|+
T Consensus        49 ~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg-----------~~l~s~~  116 (337)
T d1gxra_          49 NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDG-----------CTLIVGG  116 (337)
T ss_dssp             CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTS-----------SEEEEEE
T ss_pred             CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCC-----------CEEEEee
Confidence            6778999999999999999876 78999999876543         2345667889999999           9999999


Q ss_pred             CCCcEEEEECCCCC------------CCcEEEeCCC
Q 036317           81 GDGSVYAWSARSGK------------EPPVIKWAPG  104 (106)
Q Consensus        81 ~d~~i~~wd~~~~~------------~v~~i~~sp~  104 (106)
                      .|++|++||+...+            .+.++.|+|+
T Consensus       117 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~  152 (337)
T d1gxra_         117 EASTLSIWDLAAPTPRIKAELTSSAPACYALAISPD  152 (337)
T ss_dssp             SSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTT
T ss_pred             cccccccccccccccccccccccccccccccccccc
Confidence            99999999998654            6677888876

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.61  E-value=2.4e-15  Score=103.49  Aligned_cols=83  Identities=23%  Similarity=0.323  Sum_probs=70.2

Q ss_pred             CCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----------------------eccCCCcEEEEEecCCcceee
Q 036317           10 GDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----------------------PVSHNSTLEASFSQHLSLVAL   67 (106)
Q Consensus        10 ~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----------------------~~~~~~~~~~~fs~d~~~~~~   67 (106)
                      +|.+.|++++|||||++|++++ |+.|+|||+.+++.                      ..+...+.+++|+|++     
T Consensus        60 ~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~-----  133 (388)
T d1erja_          60 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDG-----  133 (388)
T ss_dssp             ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTS-----
T ss_pred             CCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCC-----
Confidence            5778999999999999988876 88999999988765                      1123446789999999     


Q ss_pred             eeeecccEEEEecCCCcEEEEECCCCC----------CCcEEEeCCC
Q 036317           68 SVLILRSWVLEGSGDGSVYAWSARSGK----------EPPVIKWAPG  104 (106)
Q Consensus        68 ~~~~~~~~i~t~s~d~~i~~wd~~~~~----------~v~~i~~sp~  104 (106)
                            ++|++|+.|+.|++||..+++          .|.++.|+|.
T Consensus       134 ------~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~  174 (388)
T d1erja_         134 ------KFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPS  174 (388)
T ss_dssp             ------SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTT
T ss_pred             ------Ccceecccccccccccccccccccccccccccccccccccc
Confidence                  999999999999999999876          6778888775

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.61  E-value=3.3e-15  Score=103.89  Aligned_cols=89  Identities=10%  Similarity=0.068  Sum_probs=76.8

Q ss_pred             eeecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce------eccCCCcEEEEEecCCcceeeeeeecccEEEE
Q 036317            5 IFSDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL------PVSHNSTLEASFSQHLSLVALSVLILRSWVLE   78 (106)
Q Consensus         5 ~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~------~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t   78 (106)
                      ...+.+|.+.|++++|+|+++++++++.|+++++||..++..      ..+...+..+.|+|++           +++++
T Consensus        44 ~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~-----------~~l~~  112 (371)
T d1k8kc_          44 VHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNE-----------KKFAV  112 (371)
T ss_dssp             EEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTS-----------SEEEE
T ss_pred             EEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeeccccccccccccccccccccccccccc-----------cccee
Confidence            344567888999999999999999999999999999987764      3345667889999999           99999


Q ss_pred             ecCCCcEEEEECCCCC--------------CCcEEEeCCC
Q 036317           79 GSGDGSVYAWSARSGK--------------EPPVIKWAPG  104 (106)
Q Consensus        79 ~s~d~~i~~wd~~~~~--------------~v~~i~~sp~  104 (106)
                      ++.|+++++|+++...              .|.+++|+|+
T Consensus       113 ~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~  152 (371)
T d1k8kc_         113 GSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPN  152 (371)
T ss_dssp             EETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTT
T ss_pred             ecccCcceeeeeeccccccccccccccccccccccccccc
Confidence            9999999999987654              6789999986

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.59  E-value=1.3e-14  Score=99.52  Aligned_cols=77  Identities=21%  Similarity=0.289  Sum_probs=67.7

Q ss_pred             ecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce-----------eccCCCcEEEEEecCCcceeeeeeecccE
Q 036317            7 SDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL-----------PVSHNSTLEASFSQHLSLVALSVLILRSW   75 (106)
Q Consensus         7 ~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~-----------~~~~~~~~~~~fs~d~~~~~~~~~~~~~~   75 (106)
                      ....+...|+++.|+|+++++++++.|+.+.+||..+++.           ..+.+.+.+++|+|++           ++
T Consensus       184 ~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~-----------~~  252 (311)
T d1nr0a1         184 TFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDG-----------TK  252 (311)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTS-----------SE
T ss_pred             ccccccccccccccCccccccccccccccccccccccccccccccccccccccccccccccccCCCC-----------CE
Confidence            3456677999999999999999999999999999987764           2245678889999999           99


Q ss_pred             EEEecCCCcEEEEECCCCC
Q 036317           76 VLEGSGDGSVYAWSARSGK   94 (106)
Q Consensus        76 i~t~s~d~~i~~wd~~~~~   94 (106)
                      |++|+.|++|++||+++++
T Consensus       253 l~tgs~Dg~v~iwd~~t~~  271 (311)
T d1nr0a1         253 IASASADKTIKIWNVATLK  271 (311)
T ss_dssp             EEEEETTSEEEEEETTTTE
T ss_pred             EEEEeCCCeEEEEECCCCc
Confidence            9999999999999999987

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.58  E-value=1.3e-14  Score=96.62  Aligned_cols=93  Identities=11%  Similarity=0.096  Sum_probs=73.2

Q ss_pred             CCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce-----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcE
Q 036317           11 DVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL-----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSV   85 (106)
Q Consensus        11 ~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~-----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i   85 (106)
                      +.+.+++++|+|+|+++++++.++.+++||..+++.     ..+...+..++|+|+++.......-. .++++|+.|++|
T Consensus       161 ~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~-~~l~sgs~D~~i  239 (287)
T d1pgua2         161 LRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEE-DLVATGSLDTNI  239 (287)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSC-CEEEEEETTSCE
T ss_pred             cCCceeEEEeccCccccccccccccccceeecccccccccccccccccceeeecccccccccccCCC-CeeEeecCCCeE
Confidence            446899999999999999999999999999988875     34566778899998875444333333 789999999999


Q ss_pred             EEEECCCCC-----------CCcEEEeCCC
Q 036317           86 YAWSARSGK-----------EPPVIKWAPG  104 (106)
Q Consensus        86 ~~wd~~~~~-----------~v~~i~~sp~  104 (106)
                      ++||++++.           .|.++.|+|+
T Consensus       240 ~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~  269 (287)
T d1pgua2         240 FIYSVKRPMKIIKALNAHKDGVNNLLWETP  269 (287)
T ss_dssp             EEEESSCTTCCEEETTSSTTCEEEEEEEET
T ss_pred             EEEECCCCCeEEEEeCCCCCCeEEEEECCC
Confidence            999998744           7889999875

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.57  E-value=2.6e-14  Score=97.89  Aligned_cols=85  Identities=13%  Similarity=0.159  Sum_probs=73.5

Q ss_pred             CCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce------eccCCCcEEEEEecCCcceeeeeeecccEEEEecC-
Q 036317            9 GGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL------PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSG-   81 (106)
Q Consensus         9 ~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~------~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~-   81 (106)
                      .+|...|++++|+|+|+++++++.|++|++||..+++.      ..+.+.+.+++|+|++           +++++++. 
T Consensus        55 ~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~-----------~~l~~~~~~  123 (311)
T d1nr0a1          55 TEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSES-----------KRIAAVGEG  123 (311)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTS-----------CEEEEEECC
T ss_pred             cCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccccccccccCccccccccccc-----------ccccccccc
Confidence            46778999999999999999999999999999987753      3466778889999999           99888876 


Q ss_pred             -CCcEEEEECCCCC----------CCcEEEeCCC
Q 036317           82 -DGSVYAWSARSGK----------EPPVIKWAPG  104 (106)
Q Consensus        82 -d~~i~~wd~~~~~----------~v~~i~~sp~  104 (106)
                       +..+++|++++++          .|.+++|+|+
T Consensus       124 ~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~  157 (311)
T d1nr0a1         124 RERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPS  157 (311)
T ss_dssp             SSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSS
T ss_pred             cccccccccccccccccccccccccccccccccc
Confidence             4569999999877          6899999986

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.57  E-value=7e-15  Score=96.95  Aligned_cols=73  Identities=16%  Similarity=0.232  Sum_probs=65.5

Q ss_pred             eecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecC
Q 036317            6 FSDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSG   81 (106)
Q Consensus         6 ~~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~   81 (106)
                      ..+.++...|.+++|+|+|+++++++.|+.|++||..+++.    ..+.+.+.+++|+|++           ++|++|+.
T Consensus       241 ~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~-----------~~l~s~s~  309 (317)
T d1vyhc1         241 MTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTA-----------PYVVTGSV  309 (317)
T ss_dssp             EEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSS-----------SCEEEEET
T ss_pred             EEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCC-----------CEEEEEeC
Confidence            34456778999999999999999999999999999998876    4567788899999999           99999999


Q ss_pred             CCcEEEEE
Q 036317           82 DGSVYAWS   89 (106)
Q Consensus        82 d~~i~~wd   89 (106)
                      |++|++||
T Consensus       310 Dg~i~iWd  317 (317)
T d1vyhc1         310 DQTVKVWE  317 (317)
T ss_dssp             TSEEEEEC
T ss_pred             CCeEEEeC
Confidence            99999997

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.56  E-value=2.5e-14  Score=95.86  Aligned_cols=77  Identities=13%  Similarity=0.303  Sum_probs=70.1

Q ss_pred             ecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCC
Q 036317            7 SDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGD   82 (106)
Q Consensus         7 ~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d   82 (106)
                      .+.||.+.|++++|+|+++++++++.|+.|++||..+++.    ..+...+..++|+|++           +++++|+.|
T Consensus        50 tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~-----------~~l~~~~~d  118 (340)
T d1tbga_          50 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG-----------NYVACGGLD  118 (340)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTS-----------SEEEEEETT
T ss_pred             EECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccc-----------eeeeeeccc
Confidence            4678999999999999999999999999999999999887    4566778899999999           999999999


Q ss_pred             CcEEEEECCCCC
Q 036317           83 GSVYAWSARSGK   94 (106)
Q Consensus        83 ~~i~~wd~~~~~   94 (106)
                      +.+++|+.....
T Consensus       119 ~~i~~~~~~~~~  130 (340)
T d1tbga_         119 NICSIYNLKTRE  130 (340)
T ss_dssp             CCEEEEESSSSC
T ss_pred             ceeecccccccc
Confidence            999999988655

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.56  E-value=3.1e-14  Score=95.17  Aligned_cols=85  Identities=16%  Similarity=0.123  Sum_probs=70.4

Q ss_pred             cCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce-----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCC
Q 036317            8 DGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL-----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGD   82 (106)
Q Consensus         8 ~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~-----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d   82 (106)
                      +.||.+.|++++|+|||+++++++.|+.|++||+.+++.     ..+...+.++.|+|++           ++++ ++.|
T Consensus         8 ~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g-----------~~~~-~~~d   75 (299)
T d1nr0a2           8 RYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKG-----------DLFT-VSWD   75 (299)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTS-----------CEEE-EETT
T ss_pred             cCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccc-----------eeec-ccce
Confidence            478999999999999999999999999999999999886     2355677889999999           8654 5568


Q ss_pred             CcEEEEECCCCC-------------CCcEEEeCCC
Q 036317           83 GSVYAWSARSGK-------------EPPVIKWAPG  104 (106)
Q Consensus        83 ~~i~~wd~~~~~-------------~v~~i~~sp~  104 (106)
                      +.+++|++....             .+.++.|+|+
T Consensus        76 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  110 (299)
T d1nr0a2          76 DHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSAD  110 (299)
T ss_dssp             TEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTT
T ss_pred             eeEEEeccCCccccccccccccccccccccccccc
Confidence            899999986543             5567777765

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=4.6e-14  Score=96.63  Aligned_cols=83  Identities=14%  Similarity=0.197  Sum_probs=75.0

Q ss_pred             CCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce---eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEE
Q 036317           11 DVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL---PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYA   87 (106)
Q Consensus        11 ~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~---~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~   87 (106)
                      +.+.|.+++|+|+++++++++.++.+++||..+++.   ..+...+..+.|+|++           ++|++++.|+.|++
T Consensus       223 ~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~v~~s~~g-----------~~l~s~s~Dg~i~i  291 (337)
T d1gxra_         223 FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCG-----------KWFVSTGKDNLLNA  291 (337)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEECTTS-----------SEEEEEETTSEEEE
T ss_pred             cccceEEEEEcccccccceeccccccccccccccccccccccccccceEEECCCC-----------CEEEEEeCCCeEEE
Confidence            456899999999999999999999999999988876   4456678889999999           99999999999999


Q ss_pred             EECCCCC---------CCcEEEeCCC
Q 036317           88 WSARSGK---------EPPVIKWAPG  104 (106)
Q Consensus        88 wd~~~~~---------~v~~i~~sp~  104 (106)
                      ||+++++         .|.+++|+|+
T Consensus       292 wd~~~~~~~~~~~~~~~v~~~~~s~d  317 (337)
T d1gxra_         292 WRTPYGASIFQSKESSSVLSCDISVD  317 (337)
T ss_dssp             EETTTCCEEEEEECSSCEEEEEECTT
T ss_pred             EECCCCCEEEEccCCCCEEEEEEeCC
Confidence            9999988         8889999986

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.55  E-value=3.2e-14  Score=99.51  Aligned_cols=80  Identities=16%  Similarity=0.121  Sum_probs=69.1

Q ss_pred             CCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----------eccCCCcEEEEEecCCcceeeeeeecccEEEEecCC
Q 036317           13 SDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----------PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGD   82 (106)
Q Consensus        13 ~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----------~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d   82 (106)
                      ..+.+++|+||| ++++++.|++|++||..+++.          ..+...+.+++|+||+           ++|++|+.|
T Consensus       185 ~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg-----------~~l~sgs~D  252 (393)
T d1sq9a_         185 QFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQG-----------SLLAIAHDS  252 (393)
T ss_dssp             CCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSST-----------TEEEEEEEE
T ss_pred             CcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEccccccc-----------ceeeeecCC
Confidence            468899999998 689999999999999998875          2355678899999999           999999998


Q ss_pred             Cc---EEEEECCCCC-----------------------CCcEEEeCCC
Q 036317           83 GS---VYAWSARSGK-----------------------EPPVIKWAPG  104 (106)
Q Consensus        83 ~~---i~~wd~~~~~-----------------------~v~~i~~sp~  104 (106)
                      ++   |++||+++++                       .|.+++|+|+
T Consensus       253 ~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd  300 (393)
T d1sq9a_         253 NSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDS  300 (393)
T ss_dssp             TTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSS
T ss_pred             CCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCC
Confidence            75   9999999875                       4888999986

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.53  E-value=5.7e-14  Score=93.84  Aligned_cols=74  Identities=18%  Similarity=0.192  Sum_probs=65.3

Q ss_pred             CCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce-------eccCCCcEEEEEecCCcceeeeeeecccEEEEecCC
Q 036317           10 GDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL-------PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGD   82 (106)
Q Consensus        10 ~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~-------~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d   82 (106)
                      .+...|.+++|+|+++++++++.++.+++||..++..       ..+...+.+++|+|++           ++|++|+.|
T Consensus       177 ~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~-----------~~l~sgs~d  245 (299)
T d1nr0a2         177 VHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDN-----------VRLATGSLD  245 (299)
T ss_dssp             ECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTS-----------SEEEEEETT
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-----------cceEEEcCC
Confidence            4567899999999999999999999999999887654       2345677889999999           999999999


Q ss_pred             CcEEEEECCCCC
Q 036317           83 GSVYAWSARSGK   94 (106)
Q Consensus        83 ~~i~~wd~~~~~   94 (106)
                      +.|++||+++++
T Consensus       246 g~i~iwd~~~~~  257 (299)
T d1nr0a2         246 NSVIVWNMNKPS  257 (299)
T ss_dssp             SCEEEEETTCTT
T ss_pred             CEEEEEECCCCC
Confidence            999999999875

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.53  E-value=2.8e-14  Score=94.72  Aligned_cols=76  Identities=13%  Similarity=0.146  Sum_probs=64.7

Q ss_pred             CCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce-------eccCCCcEEEEEecCCcceeeeeeecccEEEEecC
Q 036317            9 GGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL-------PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSG   81 (106)
Q Consensus         9 ~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~-------~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~   81 (106)
                      .+|...|++|+|+|+|++|++++.|++|+|||+.++..       ..+.+.+.+++|+|++          ..+|++|+.
T Consensus         8 ~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~----------~~~l~sg~~   77 (342)
T d1yfqa_           8 QAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNT----------DLQIYVGTV   77 (342)
T ss_dssp             SCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESS----------SEEEEEEET
T ss_pred             CCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCC----------CCEEEEccc
Confidence            45667899999999999999999999999999876543       2466788899999874          168999999


Q ss_pred             CCcEEEEECCCCC
Q 036317           82 DGSVYAWSARSGK   94 (106)
Q Consensus        82 d~~i~~wd~~~~~   94 (106)
                      |+.|++|++..+.
T Consensus        78 d~~v~~w~~~~~~   90 (342)
T d1yfqa_          78 QGEILKVDLIGSP   90 (342)
T ss_dssp             TSCEEEECSSSSS
T ss_pred             ccceeeeeccccc
Confidence            9999999998776

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.52  E-value=8.2e-14  Score=95.62  Aligned_cols=74  Identities=20%  Similarity=0.354  Sum_probs=62.1

Q ss_pred             CCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----------------eccCCCcEEEEEecCCcceeeeeeecc
Q 036317           10 GDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----------------PVSHNSTLEASFSQHLSLVALSVLILR   73 (106)
Q Consensus        10 ~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----------------~~~~~~~~~~~fs~d~~~~~~~~~~~~   73 (106)
                      ++.+.|.+++|+|+|+++++++.|+.+++||..+++.                ..+...+..++|+|++           
T Consensus       252 ~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-----------  320 (388)
T d1erja_         252 GHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQND-----------  320 (388)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGG-----------
T ss_pred             CCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCC-----------
Confidence            4567899999999999999999999999999876653                2245567789999999           


Q ss_pred             cEEEEecCCCcEEEEECCCCC
Q 036317           74 SWVLEGSGDGSVYAWSARSGK   94 (106)
Q Consensus        74 ~~i~t~s~d~~i~~wd~~~~~   94 (106)
                      ++|++|+.||+|++||+++++
T Consensus       321 ~~l~sg~~dg~i~vwd~~~~~  341 (388)
T d1erja_         321 EYILSGSKDRGVLFWDKKSGN  341 (388)
T ss_dssp             CEEEEEETTSEEEEEETTTCC
T ss_pred             CEEEEEeCCCEEEEEECCCCc
Confidence            999999999999999999998

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.51  E-value=1.3e-13  Score=93.21  Aligned_cols=84  Identities=6%  Similarity=0.065  Sum_probs=73.1

Q ss_pred             CCCCCeeEEEECCCCCeEEEEeCCC--eEEEEEcCCCce---eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCc
Q 036317           10 GDVSDANEVKLSNDGRLMLLTTLEG--HIHVLHSFQGTL---PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGS   84 (106)
Q Consensus        10 ~~~~~v~~v~~spdg~~l~~~~~~~--~i~l~d~~~~~~---~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~   84 (106)
                      +|.+.|.+++|||||++|++++.++  .+++||..+++.   ..+...+..++|+||+           ++|++++.++.
T Consensus        40 ~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~~~~~~~v~~~~~spdg-----------~~l~~~~~~~~  108 (360)
T d1k32a3          40 PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNG-----------KFAVVANDRFE  108 (360)
T ss_dssp             SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTS-----------SEEEEEETTSE
T ss_pred             cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEEeeCCCceEEeeeecccc-----------cccceeccccc
Confidence            4667999999999999998877654  789999999887   4466677889999999           99999999999


Q ss_pred             EEEEECCCCC----------CCcEEEeCCC
Q 036317           85 VYAWSARSGK----------EPPVIKWAPG  104 (106)
Q Consensus        85 i~~wd~~~~~----------~v~~i~~sp~  104 (106)
                      +++|++++++          .+.+++|+|+
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~spd  138 (360)
T d1k32a3         109 IMTVDLETGKPTVIERSREAMITDFTISDN  138 (360)
T ss_dssp             EEEEETTTCCEEEEEECSSSCCCCEEECTT
T ss_pred             cccccccccceeeeeecccccccchhhccc
Confidence            9999999987          6788999886

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.40  E-value=1.3e-12  Score=87.19  Aligned_cols=75  Identities=15%  Similarity=0.241  Sum_probs=63.2

Q ss_pred             eecCCCCCCe-eEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEec
Q 036317            6 FSDGGDVSDA-NEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGS   80 (106)
Q Consensus         6 ~~~~~~~~~v-~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s   80 (106)
                      -.+.||...| ++  +++||+++++++.|++|+|||..+++.    ..|.+.+.+++|+|++            ++++|+
T Consensus         6 ~tL~GH~~~vitc--~~~~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~~------------~l~s~s   71 (355)
T d1nexb2           6 TTLRGHMTSVITC--LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG------------ILVSGS   71 (355)
T ss_dssp             EEEECCSSSCEEE--EEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETTT------------EEEEEE
T ss_pred             EEECCcCCCcEEE--EEECCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCCC------------EEEEEe
Confidence            4577888875 44  455789999999999999999999887    4577788899999864            689999


Q ss_pred             CCCcEEEEECCCCC
Q 036317           81 GDGSVYAWSARSGK   94 (106)
Q Consensus        81 ~d~~i~~wd~~~~~   94 (106)
                      .|++|++|++..++
T Consensus        72 ~D~~i~iw~~~~~~   85 (355)
T d1nexb2          72 TDRTVRVWDIKKGC   85 (355)
T ss_dssp             TTCCEEEEETTTTE
T ss_pred             cccccccccccccc
Confidence            99999999998876

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.40  E-value=1.1e-12  Score=89.64  Aligned_cols=75  Identities=15%  Similarity=0.239  Sum_probs=60.7

Q ss_pred             CCCCCCeeEEEECCC-CCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEe---cCCcceeeeeeecccEEEEec
Q 036317            9 GGDVSDANEVKLSND-GRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFS---QHLSLVALSVLILRSWVLEGS   80 (106)
Q Consensus         9 ~~~~~~v~~v~~spd-g~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs---~d~~~~~~~~~~~~~~i~t~s   80 (106)
                      ..+...|.+++|+|| ++++++++.|+.|++||..+++.    ..+...+..+.|+   ||+           ++|++++
T Consensus       202 ~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg-----------~~l~s~s  270 (325)
T d1pgua1         202 HKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDS-----------QKFATVG  270 (325)
T ss_dssp             SCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSS-----------SEEEEEE
T ss_pred             cCCCCccEEeeeccccceeccccccccceeeeeeccccccccccccccccccceeeeeccCC-----------CEEEEEe
Confidence            344568999999997 68888999999999999998886    3334344333444   789           9999999


Q ss_pred             CCCcEEEEECCCCC
Q 036317           81 GDGSVYAWSARSGK   94 (106)
Q Consensus        81 ~d~~i~~wd~~~~~   94 (106)
                      .|++|+|||+++++
T Consensus       271 ~D~~i~iwd~~~~~  284 (325)
T d1pgua1         271 ADATIRVWDVTTSK  284 (325)
T ss_dssp             TTSEEEEEETTTTE
T ss_pred             CCCeEEEEECCCCC
Confidence            99999999999987

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=2.6e-12  Score=83.65  Aligned_cols=69  Identities=14%  Similarity=0.193  Sum_probs=57.6

Q ss_pred             CCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEE
Q 036317           11 DVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVY   86 (106)
Q Consensus        11 ~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~   86 (106)
                      +...|.+++  +||++|++++.|++|+|||..+++.    ..|.+.+.+++  +++           ++|++|+.|+.|+
T Consensus        14 ~~~~V~c~~--~d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~--~~~-----------~~l~s~s~D~~i~   78 (293)
T d1p22a2          14 TSKGVYCLQ--YDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQ--YDE-----------RVIITGSSDSTVR   78 (293)
T ss_dssp             SCCCEEEEE--CCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEE--CCS-----------SEEEEEETTSCEE
T ss_pred             CCCCEEEEE--EcCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeee--ccc-----------ceeeccccccccc
Confidence            345787754  5899999999999999999999887    45666776554  588           9999999999999


Q ss_pred             EEECCCCC
Q 036317           87 AWSARSGK   94 (106)
Q Consensus        87 ~wd~~~~~   94 (106)
                      +|+++.+.
T Consensus        79 ~~~~~~~~   86 (293)
T d1p22a2          79 VWDVNTGE   86 (293)
T ss_dssp             EEESSSCC
T ss_pred             cccccccc
Confidence            99999887

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.30  E-value=1.6e-11  Score=83.71  Aligned_cols=78  Identities=13%  Similarity=0.165  Sum_probs=64.9

Q ss_pred             eecCCCCCCeeEEEECCCCCe-EEEEeCCCeEEEEEcCCCce-------eccCCCcEEEEEecC-CcceeeeeeecccEE
Q 036317            6 FSDGGDVSDANEVKLSNDGRL-MLLTTLEGHIHVLHSFQGTL-------PVSHNSTLEASFSQH-LSLVALSVLILRSWV   76 (106)
Q Consensus         6 ~~~~~~~~~v~~v~~spdg~~-l~~~~~~~~i~l~d~~~~~~-------~~~~~~~~~~~fs~d-~~~~~~~~~~~~~~i   76 (106)
                      ..+.+|...|++++|+|++++ +++++.|+.+++||..+++.       ..+...+..++|+|| +           .++
T Consensus       153 ~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~-----------~~l  221 (325)
T d1pgua1         153 GEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSG-----------EFV  221 (325)
T ss_dssp             EECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTC-----------CEE
T ss_pred             eeeeecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeeccccc-----------eec
Confidence            344567779999999999886 56788999999999987765       234456778999997 6           889


Q ss_pred             EEecCCCcEEEEECCCCC
Q 036317           77 LEGSGDGSVYAWSARSGK   94 (106)
Q Consensus        77 ~t~s~d~~i~~wd~~~~~   94 (106)
                      ++++.|+.|++||+++++
T Consensus       222 ~s~~~d~~i~iwd~~~~~  239 (325)
T d1pgua1         222 ITVGSDRKISCFDGKSGE  239 (325)
T ss_dssp             EEEETTCCEEEEETTTCC
T ss_pred             cccccccceeeeeecccc
Confidence            999999999999999988

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.30  E-value=5.5e-12  Score=85.05  Aligned_cols=96  Identities=7%  Similarity=0.065  Sum_probs=72.7

Q ss_pred             cCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCC
Q 036317            8 DGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDG   83 (106)
Q Consensus         8 ~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~   83 (106)
                      +..+.+.|..++|+|||+++++++.++.+.+|+..+++.    ..+...+..++|+|||++||+..... .....+..++
T Consensus        81 ~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~-~~~~~~~~~~  159 (360)
T d1k32a3          81 FEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLK-HGETDGYVMQ  159 (360)
T ss_dssp             CCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEEC-SSTTCSCCEE
T ss_pred             eeCCCceEEeeeecccccccceeccccccccccccccceeeeeecccccccchhhccceeeeeeecccc-ccceeecccc
Confidence            345567899999999999999999999999999998887    33445566799999995555443332 2223455667


Q ss_pred             cEEEEECCCCC---------CCcEEEeCCC
Q 036317           84 SVYAWSARSGK---------EPPVIKWAPG  104 (106)
Q Consensus        84 ~i~~wd~~~~~---------~v~~i~~sp~  104 (106)
                      .+++||+++++         .+..+.|+|+
T Consensus       160 ~~~v~d~~~~~~~~~~~~~~~~~~~~~spd  189 (360)
T d1k32a3         160 AIHVYDMEGRKIFAATTENSHDYAPAFDAD  189 (360)
T ss_dssp             EEEEEETTTTEEEECSCSSSBEEEEEECTT
T ss_pred             ceeeeccccCceeeecccccccccccccCC
Confidence            89999999876         4566778875

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.29  E-value=4.9e-12  Score=84.33  Aligned_cols=86  Identities=15%  Similarity=0.253  Sum_probs=67.4

Q ss_pred             eecCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce--eccCCCcEE-EEEecCCcceeeeeeecccEEEEecCC
Q 036317            6 FSDGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL--PVSHNSTLE-ASFSQHLSLVALSVLILRSWVLEGSGD   82 (106)
Q Consensus         6 ~~~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~--~~~~~~~~~-~~fs~d~~~~~~~~~~~~~~i~t~s~d   82 (106)
                      ..+.+|...|.++++++  +++++++.|+.|++||..++..  ..++..+.. ..+++++           +++++|+ |
T Consensus       237 ~~~~~h~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~l~~g~-d  302 (355)
T d1nexb2         237 YTLQGHTALVGLLRLSD--KFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSD-----------NILVSGS-E  302 (355)
T ss_dssp             EEECCCSSCCCEEEECS--SEEEEECTTSEEEEEETTTCCEEEEEECTTCCCCCEEEECS-----------SEEEEEE-T
T ss_pred             ccccccccccccccccc--ceeeeeecccccccccccccceecccccCCceEEEEEcCCC-----------CEEEEEe-C
Confidence            44566778899999874  6899999999999999988766  334444433 5678888           8877775 7


Q ss_pred             CcEEEEECCCCC-----------CCcEEEeCCCC
Q 036317           83 GSVYAWSARSGK-----------EPPVIKWAPGS  105 (106)
Q Consensus        83 ~~i~~wd~~~~~-----------~v~~i~~sp~~  105 (106)
                      ++|++||+++|+           .|.+++|+|+.
T Consensus       303 ~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~~  336 (355)
T d1nexb2         303 NQFNIYNLRSGKLVHANILKDADQIWSVNFKGKT  336 (355)
T ss_dssp             TEEEEEETTTCCBCCSCTTTTCSEEEEEEEETTE
T ss_pred             CEEEEEECCCCCEEEEEecCCCCCEEEEEEcCCe
Confidence            899999999987           67889998863

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.29  E-value=7e-12  Score=83.94  Aligned_cols=76  Identities=14%  Similarity=0.161  Sum_probs=62.8

Q ss_pred             EEECCCCCeEEEEeCCCeEEEEEcCCCce----ecc-CCCcEEEEEecCCcceeeeeeecccEE-EEecCCCcEEEEECC
Q 036317           18 VKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVS-HNSTLEASFSQHLSLVALSVLILRSWV-LEGSGDGSVYAWSAR   91 (106)
Q Consensus        18 v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~-~~~~~~~~fs~d~~~~~~~~~~~~~~i-~t~s~d~~i~~wd~~   91 (106)
                      ++|+++++|+++++.+++|++||+.++++    ... ...+..++|+|||           +++ ++++.++.|++||++
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG-----------~~l~v~~~~~~~v~~~d~~   70 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDN-----------RTAYVLNNHYGDIYGIDLD   70 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTS-----------SEEEEEETTTTEEEEEETT
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCC-----------CEEEEEECCCCcEEEEeCc
Confidence            47899999999999999999999999987    222 3346689999999           876 677789999999999


Q ss_pred             CCC----------------CCcEEEeCCC
Q 036317           92 SGK----------------EPPVIKWAPG  104 (106)
Q Consensus        92 ~~~----------------~v~~i~~sp~  104 (106)
                      +++                .+..++|+|+
T Consensus        71 t~~~~~~~~~~~~~~~~~~~~~~v~~s~D   99 (346)
T d1jmxb_          71 TCKNTFHANLSSVPGEVGRSMYSFAISPD   99 (346)
T ss_dssp             TTEEEEEEESCCSTTEEEECSSCEEECTT
T ss_pred             cCeeeeeecccccccccCCceEEEEEecC
Confidence            986                3566777775

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=4e-11  Score=79.39  Aligned_cols=84  Identities=14%  Similarity=0.238  Sum_probs=62.8

Q ss_pred             cCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCC-CcEEEEEecCCcceeeeeeecccEEEEecCC
Q 036317            8 DGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHN-STLEASFSQHLSLVALSVLILRSWVLEGSGD   82 (106)
Q Consensus         8 ~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~-~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d   82 (106)
                      ..++...+.+++++  ++++++++.|+.+++||....+.    ..... .....++++++           +++++|+.|
T Consensus       213 ~~~~~~~v~~~~~~--~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~s~s~D  279 (342)
T d2ovrb2         213 LTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK-----------NFVITSSDD  279 (342)
T ss_dssp             ECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECS-----------SEEEEEETT
T ss_pred             ecccccceeEEecC--CCEEEEEcCCCEEEEEecccccccccccccceeeeceeecccCC-----------CeeEEEcCC
Confidence            34555677776665  56899999999999999988765    11111 11224556677           889999999


Q ss_pred             CcEEEEECCCCC---------------CCcEEEeCCC
Q 036317           83 GSVYAWSARSGK---------------EPPVIKWAPG  104 (106)
Q Consensus        83 ~~i~~wd~~~~~---------------~v~~i~~sp~  104 (106)
                      |+|++||+++|+               .|.+++|+|+
T Consensus       280 g~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~  316 (342)
T d2ovrb2         280 GTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNT  316 (342)
T ss_dssp             SEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSS
T ss_pred             CEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCC
Confidence            999999999987               3778899886

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.22  E-value=6.1e-11  Score=78.45  Aligned_cols=70  Identities=10%  Similarity=0.196  Sum_probs=57.6

Q ss_pred             CCCCCCeeEEEECCC----------CCeEEEEeCCCeEEEEEcCCCc-e----eccCCCcEEEEEecCCcceeeeeeecc
Q 036317            9 GGDVSDANEVKLSND----------GRLMLLTTLEGHIHVLHSFQGT-L----PVSHNSTLEASFSQHLSLVALSVLILR   73 (106)
Q Consensus         9 ~~~~~~v~~v~~spd----------g~~l~~~~~~~~i~l~d~~~~~-~----~~~~~~~~~~~fs~d~~~~~~~~~~~~   73 (106)
                      .+|..+|.+++|+|+          +.++++++.|+++++||+.++. .    ..|...+.++.|+|++           
T Consensus       202 ~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-----------  270 (287)
T d1pgua2         202 AFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-----------  270 (287)
T ss_dssp             CCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-----------
T ss_pred             cccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCC-----------
Confidence            456678999999875          4689999999999999987643 3    3466778899999987           


Q ss_pred             cEEEEecCCCcEEEEEC
Q 036317           74 SWVLEGSGDGSVYAWSA   90 (106)
Q Consensus        74 ~~i~t~s~d~~i~~wd~   90 (106)
                      + +++++.|++|++|++
T Consensus       271 ~-l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         271 T-LVSSGADACIKRWNV  286 (287)
T ss_dssp             E-EEEEETTSCEEEEEE
T ss_pred             E-EEEEECCCeEEEEEE
Confidence            5 778889999999996

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.21  E-value=1.3e-11  Score=88.19  Aligned_cols=70  Identities=7%  Similarity=0.061  Sum_probs=57.2

Q ss_pred             CeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce------e---ccCCCcEEEEEecCCcceeeeeeecccEE-EEecCCC
Q 036317           14 DANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL------P---VSHNSTLEASFSQHLSLVALSVLILRSWV-LEGSGDG   83 (106)
Q Consensus        14 ~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~------~---~~~~~~~~~~fs~d~~~~~~~~~~~~~~i-~t~s~d~   83 (106)
                      .+..++|||||+++++++.|+.+.+||+.+++.      +   .+.+.+.+..|+|||           +++ ++++.++
T Consensus        63 ~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG-----------~~l~vs~~~~~  131 (432)
T d1qksa2          63 AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWED-----------KYAIAGAYWPP  131 (432)
T ss_dssp             CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTT-----------TEEEEEEEETT
T ss_pred             CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCC-----------CEEEEEcCCCC
Confidence            689999999999999999999999999988764      1   122223345678899           875 7888899


Q ss_pred             cEEEEECCCCC
Q 036317           84 SVYAWSARSGK   94 (106)
Q Consensus        84 ~i~~wd~~~~~   94 (106)
                      +|++||.++++
T Consensus       132 ~v~i~d~~t~~  142 (432)
T d1qksa2         132 QYVIMDGETLE  142 (432)
T ss_dssp             EEEEEETTTCC
T ss_pred             eEEEEeCcccc
Confidence            99999999987

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=3.1e-11  Score=79.95  Aligned_cols=73  Identities=15%  Similarity=0.248  Sum_probs=60.4

Q ss_pred             cCCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCC
Q 036317            8 DGGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDG   83 (106)
Q Consensus         8 ~~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~   83 (106)
                      +.||.+.|.+ +++++|++|++++.|++|+|||+.+++.    ..+.+.+.++.|+|             .++++++.|+
T Consensus        12 l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~-------------~~l~s~s~D~   77 (342)
T d2ovrb2          12 LKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD-------------NIIISGSTDR   77 (342)
T ss_dssp             EECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEET-------------TEEEEEETTS
T ss_pred             ECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCC-------------Cccccceecc
Confidence            4688888865 4778899999999999999999999987    45667788888874             4578889999


Q ss_pred             cEEEEECCCCC
Q 036317           84 SVYAWSARSGK   94 (106)
Q Consensus        84 ~i~~wd~~~~~   94 (106)
                      ++++|+.....
T Consensus        78 ~~~~~~~~~~~   88 (342)
T d2ovrb2          78 TLKVWNAETGE   88 (342)
T ss_dssp             CEEEEETTTTE
T ss_pred             ccccccccccc
Confidence            99999987655

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.14  E-value=2.6e-11  Score=85.55  Aligned_cols=71  Identities=7%  Similarity=0.031  Sum_probs=57.4

Q ss_pred             CCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce------e---ccCCCcEEEEEecCCcceeeeeeecccEE-EEecCC
Q 036317           13 SDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL------P---VSHNSTLEASFSQHLSLVALSVLILRSWV-LEGSGD   82 (106)
Q Consensus        13 ~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~------~---~~~~~~~~~~fs~d~~~~~~~~~~~~~~i-~t~s~d   82 (106)
                      ..+..++|||||+++++++.|+++.+||+.+++.      +   .+.+.+.++.|+|||           +++ +++..+
T Consensus        62 ~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG-----------~~l~v~~~~~  130 (426)
T d1hzua2          62 YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYED-----------RYTIAGAYWP  130 (426)
T ss_dssp             SSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTT-----------TEEEEEEEES
T ss_pred             CCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCC-----------CEEEEeecCC
Confidence            3689999999999999999999999999998874      1   222333456788999           886 455578


Q ss_pred             CcEEEEECCCCC
Q 036317           83 GSVYAWSARSGK   94 (106)
Q Consensus        83 ~~i~~wd~~~~~   94 (106)
                      +++.+||.++++
T Consensus       131 ~~v~i~d~~~~~  142 (426)
T d1hzua2         131 PQFAIMDGETLE  142 (426)
T ss_dssp             SEEEEEETTTCC
T ss_pred             CeEEEEcCCccc
Confidence            999999999887

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.08  E-value=9.2e-11  Score=77.31  Aligned_cols=69  Identities=10%  Similarity=0.056  Sum_probs=57.0

Q ss_pred             CCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce--e-ccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEE
Q 036317           12 VSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL--P-VSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAW   88 (106)
Q Consensus        12 ~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~--~-~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~w   88 (106)
                      ...|++++|+|+++++++++.|+.|++||+.+++.  . ........++|+|++           +++++++.|+++++|
T Consensus       251 ~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~~~~~~~~~s~~~-----------~~l~~a~sdd~~~~~  319 (342)
T d1yfqa_         251 AYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSD-----------NILCLATSDDTFKTN  319 (342)
T ss_dssp             CCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEEECS-----------SEEEEEEECTHHHHC
T ss_pred             cccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCCCCCEEEEEEeCC-----------CEEEEEEcCCcEEEe
Confidence            34789999999999999999999999999999876  1 122344568899999           999998888888888


Q ss_pred             ECC
Q 036317           89 SAR   91 (106)
Q Consensus        89 d~~   91 (106)
                      ...
T Consensus       320 ~~~  322 (342)
T d1yfqa_         320 AAI  322 (342)
T ss_dssp             SSS
T ss_pred             eee
Confidence            664

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.06  E-value=4.4e-10  Score=74.70  Aligned_cols=69  Identities=7%  Similarity=0.030  Sum_probs=55.9

Q ss_pred             CeEEEEeCCCeEEEEEcCCCce----ec--cCCCcEEEEEecCCcceeeeeeecccEE-EEecCCCcEEEEECCCCC---
Q 036317           25 RLMLLTTLEGHIHVLHSFQGTL----PV--SHNSTLEASFSQHLSLVALSVLILRSWV-LEGSGDGSVYAWSARSGK---   94 (106)
Q Consensus        25 ~~l~~~~~~~~i~l~d~~~~~~----~~--~~~~~~~~~fs~d~~~~~~~~~~~~~~i-~t~s~d~~i~~wd~~~~~---   94 (106)
                      +|+++++.+++|++||..++++    +.  ....+..++|+|||           +++ ++++.++.|.+||+++++   
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg-----------~~l~v~~~~~~~v~v~D~~t~~~~~   70 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGG-----------RIAYATVNKSESLVKIDLVTGETLG   70 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTS-----------SEEEEEETTTTEEEEEETTTCCEEE
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCC-----------CEEEEEECCCCeEEEEECCCCcEEE
Confidence            5889999999999999999987    21  22345679999999           886 677889999999999998   


Q ss_pred             ------------CCcEEEeCCC
Q 036317           95 ------------EPPVIKWAPG  104 (106)
Q Consensus        95 ------------~v~~i~~sp~  104 (106)
                                  .+..++|+|+
T Consensus        71 ~~~~~~~~~~~~~~~~v~~s~d   92 (337)
T d1pbyb_          71 RIDLSTPEERVKSLFGAALSPD   92 (337)
T ss_dssp             EEECCBTTEEEECTTCEEECTT
T ss_pred             EEecCCCcccccceeeEEEcCC
Confidence                        3456777775

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.06  E-value=5.1e-10  Score=74.67  Aligned_cols=84  Identities=15%  Similarity=0.080  Sum_probs=62.9

Q ss_pred             CCCCCeeEEEECCCCCeEEEEe-CCCeEEEEEcCCCce-------eccCCCcEEEEEecCCcceeeeeeecccEEEEecC
Q 036317           10 GDVSDANEVKLSNDGRLMLLTT-LEGHIHVLHSFQGTL-------PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSG   81 (106)
Q Consensus        10 ~~~~~v~~v~~spdg~~l~~~~-~~~~i~l~d~~~~~~-------~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~   81 (106)
                      .+.+.+..++|||||++|++++ .++.|.+|++.....       ......+..++|+|||           ++|+.++.
T Consensus        34 ~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg-----------~~l~v~~~  102 (333)
T d1ri6a_          34 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQG-----------QFVFVGSY  102 (333)
T ss_dssp             ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTS-----------SEEEEEET
T ss_pred             cCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCC-----------CEEeeccc
Confidence            3456899999999999996655 589999999876532       1233456679999999           88888765


Q ss_pred             -CCcEEEEECCCCC------------CCcEEEeCCC
Q 036317           82 -DGSVYAWSARSGK------------EPPVIKWAPG  104 (106)
Q Consensus        82 -d~~i~~wd~~~~~------------~v~~i~~sp~  104 (106)
                       ++++.+|+.+...            .+.++.++|+
T Consensus       103 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d  138 (333)
T d1ri6a_         103 NAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPD  138 (333)
T ss_dssp             TTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTT
T ss_pred             CCCceeeeccccccceecccccCCCccceEEEeeec
Confidence             6688999877654            5666777765

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.00  E-value=1.4e-09  Score=74.12  Aligned_cols=85  Identities=18%  Similarity=0.107  Sum_probs=62.2

Q ss_pred             CCCCCCeeEEEECCCCCeEEEEe-----CCCeEEEEEcCCCce--eccCCCcEEEEEecCCcceeeeeeecccEEEEecC
Q 036317            9 GGDVSDANEVKLSNDGRLMLLTT-----LEGHIHVLHSFQGTL--PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSG   81 (106)
Q Consensus         9 ~~~~~~v~~v~~spdg~~l~~~~-----~~~~i~l~d~~~~~~--~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~   81 (106)
                      ....+++..++++|||+.+++..     ..+.+.+||..+++.  ....+....+.|||||++++...... ..+..++.
T Consensus        17 ~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~~~a~SpDG~~l~va~~~~-~~~~~~~~   95 (373)
T d2madh_          17 GAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLPNPVAAHSGSEFALASTSF-SRIAKGKR   95 (373)
T ss_pred             ccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCccEEEcCCCCEEEEEeecC-Cccccccc
Confidence            34566899999999999987653     346799999999988  21222333689999996666655444 33445567


Q ss_pred             CCcEEEEECCCCC
Q 036317           82 DGSVYAWSARSGK   94 (106)
Q Consensus        82 d~~i~~wd~~~~~   94 (106)
                      ++.|.+||+.+++
T Consensus        96 ~~~v~v~D~~t~~  108 (373)
T d2madh_          96 TDYVEVFDPVTFL  108 (373)
T ss_pred             ceEEEEEECCCCc
Confidence            8899999999998

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.99  E-value=8.8e-10  Score=77.53  Aligned_cols=66  Identities=9%  Similarity=-0.034  Sum_probs=53.2

Q ss_pred             EEECCCCC--eEEEEeCCCeEEEEEcCCCce---eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEEECCC
Q 036317           18 VKLSNDGR--LMLLTTLEGHIHVLHSFQGTL---PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSARS   92 (106)
Q Consensus        18 v~~spdg~--~l~~~~~~~~i~l~d~~~~~~---~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd~~~   92 (106)
                      ..+++|.+  ++++...+++|.|||..++++   ......+..++|||||           +++++++.|+++++||+++
T Consensus        24 ~~~~~d~~~~~~V~~~~dg~v~vwD~~t~~~~~~l~~g~~~~~vafSPDG-----------k~l~~~~~d~~v~vwd~~t   92 (426)
T d1hzua2          24 QLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASG-----------RYLLVIGRDARIDMIDLWA   92 (426)
T ss_dssp             CCSCCCGGGEEEEEETTTTEEEEEETTTCSEEEEEECCSSEEEEEECTTS-----------CEEEEEETTSEEEEEETTS
T ss_pred             ccccCCCCeEEEEEEcCCCEEEEEECCCCcEEEEEeCCCCeeEEEECCCC-----------CEEEEEeCCCCEEEEEccC
Confidence            34666644  345667889999999999987   2233456789999999           9999999999999999998


Q ss_pred             CC
Q 036317           93 GK   94 (106)
Q Consensus        93 ~~   94 (106)
                      ++
T Consensus        93 ~~   94 (426)
T d1hzua2          93 KE   94 (426)
T ss_dssp             SS
T ss_pred             Cc
Confidence            87

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=98.99  E-value=2.6e-09  Score=70.04  Aligned_cols=77  Identities=6%  Similarity=0.028  Sum_probs=61.1

Q ss_pred             CCeeEEEECCCCCeEEEEeC---CCeEEEEEcCCCce---eccCCCcEEEEEecCCcceeeeeeecccEE-EEecCCCcE
Q 036317           13 SDANEVKLSNDGRLMLLTTL---EGHIHVLHSFQGTL---PVSHNSTLEASFSQHLSLVALSVLILRSWV-LEGSGDGSV   85 (106)
Q Consensus        13 ~~v~~v~~spdg~~l~~~~~---~~~i~l~d~~~~~~---~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i-~t~s~d~~i   85 (106)
                      .....++|+++|+.++++..   ++.+.+||..+++.   ......+..++|+|||           ++| ++++.|++|
T Consensus       200 ~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~va~spdg-----------~~l~va~~~~~~i  268 (301)
T d1l0qa2         200 AAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDG-----------KKVYVALSFCNTV  268 (301)
T ss_dssp             SEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSSEEEEEECTTS-----------SEEEEEETTTTEE
T ss_pred             CCcceeeccccccccccccccceeeeeeeeecCCCeEEEEEcCCCCEEEEEEeCCC-----------CEEEEEECCCCeE
Confidence            35678999999998876653   36899999999887   1233456789999999           876 688889999


Q ss_pred             EEEECCCCCCCcEEE
Q 036317           86 YAWSARSGKEPPVIK  100 (106)
Q Consensus        86 ~~wd~~~~~~v~~i~  100 (106)
                      ++||+++++.+..+.
T Consensus       269 ~v~D~~t~~~~~~~~  283 (301)
T d1l0qa2         269 SVIDTATNTITATMA  283 (301)
T ss_dssp             EEEETTTTEEEEEEE
T ss_pred             EEEECCCCeEEEEEe
Confidence            999999998555554

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.98  E-value=1e-09  Score=77.74  Aligned_cols=71  Identities=15%  Similarity=0.078  Sum_probs=58.1

Q ss_pred             CCCeeEEEECCCCCeEEEEeC---------CCeEEEEEcCCCce---eccCCCcEEEEEecCCcceeeeeeecccEEEEe
Q 036317           12 VSDANEVKLSNDGRLMLLTTL---------EGHIHVLHSFQGTL---PVSHNSTLEASFSQHLSLVALSVLILRSWVLEG   79 (106)
Q Consensus        12 ~~~v~~v~~spdg~~l~~~~~---------~~~i~l~d~~~~~~---~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~   79 (106)
                      ...|.+++|||||++||.++.         ++.+.+||+.+++.   ..+...+..+.|||||           ++|+..
T Consensus        61 ~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~~~l~~~~~~~~~~~~SPDG-----------~~ia~~  129 (470)
T d2bgra1          61 GHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERIPNNTQWVTWSPVG-----------HKLAYV  129 (470)
T ss_dssp             SSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCTTEEEEEECSST-----------TCEEEE
T ss_pred             cCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCcccccccCCccccccccccCc-----------ceeeEe
Confidence            357999999999999998754         46788999999987   3455567789999999           888875


Q ss_pred             cCCCcEEEEECCCCC
Q 036317           80 SGDGSVYAWSARSGK   94 (106)
Q Consensus        80 s~d~~i~~wd~~~~~   94 (106)
                       .++.+++|++.+++
T Consensus       130 -~~~~l~~~~~~~g~  143 (470)
T d2bgra1         130 -WNNDIYVKIEPNLP  143 (470)
T ss_dssp             -ETTEEEEESSTTSC
T ss_pred             -ecccceEEECCCCc
Confidence             45689999999886

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.98  E-value=3e-09  Score=70.53  Aligned_cols=76  Identities=11%  Similarity=-0.038  Sum_probs=62.0

Q ss_pred             CCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce---eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEEE
Q 036317           13 SDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL---PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWS   89 (106)
Q Consensus        13 ~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~---~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd   89 (106)
                      ..+..+.++|++.+++..  ++.+++||+.+++.   ......+..++|+|||           +++++++.|++|++||
T Consensus       241 ~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dG-----------~~l~v~~~~~~i~v~D  307 (337)
T d1pbyb_         241 VFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDG-----------STVWLGGALGDLAAYD  307 (337)
T ss_dssp             SCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECTTS-----------CEEEEESBSSEEEEEE
T ss_pred             cceEEEEecccceEEEEc--cccEEEEECCCCcEEEEEcCCCCEEEEEECCCC-----------CEEEEEeCCCcEEEEE
Confidence            467778889999977654  58999999999987   2234456789999999           9999999999999999


Q ss_pred             CCCCCCCcEEEe
Q 036317           90 ARSGKEPPVIKW  101 (106)
Q Consensus        90 ~~~~~~v~~i~~  101 (106)
                      +++++.+..++.
T Consensus       308 ~~t~~~v~~i~~  319 (337)
T d1pbyb_         308 AETLEKKGQVDL  319 (337)
T ss_dssp             TTTCCEEEEEEC
T ss_pred             CCCCcEEEEEEC
Confidence            999996666553

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=3e-09  Score=68.65  Aligned_cols=82  Identities=11%  Similarity=0.146  Sum_probs=60.6

Q ss_pred             CCCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCc
Q 036317            9 GGDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGS   84 (106)
Q Consensus         9 ~~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~   84 (106)
                      .++...+..+.+  ++.++++++.|+.+++||..+.+.    ..+...+  ..+++++           .++++|+.||.
T Consensus       175 ~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v--~~~~~~~-----------~~l~sg~~dg~  239 (293)
T d1p22a2         175 NGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELV--RCIRFDN-----------KRIVSGAYDGK  239 (293)
T ss_dssp             ECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCE--EEEECCS-----------SEEEEEETTSC
T ss_pred             cccccccccccC--CCCeEEEecCCCEEEEEecccceeeeeecccceee--eeccccc-----------eEEEEEcCCCE
Confidence            344445655555  467899999999999999988876    2222222  4567888           99999999999


Q ss_pred             EEEEECCCCC-------------------CCcEEEeCCCC
Q 036317           85 VYAWSARSGK-------------------EPPVIKWAPGS  105 (106)
Q Consensus        85 i~~wd~~~~~-------------------~v~~i~~sp~~  105 (106)
                      |++||+.++.                   .|.+++|+|++
T Consensus       240 i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d~~~  279 (293)
T d1p22a2         240 IKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQ  279 (293)
T ss_dssp             EEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEECSSC
T ss_pred             EEEEECCCCccccccCCceeeEEecCCCCCEEEEEEcCCE
Confidence            9999975432                   67888888765

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=98.92  E-value=3.5e-09  Score=70.44  Aligned_cols=78  Identities=9%  Similarity=-0.058  Sum_probs=62.9

Q ss_pred             CCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce---eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEE
Q 036317           12 VSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL---PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAW   88 (106)
Q Consensus        12 ~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~---~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~w   88 (106)
                      ...+..+.+++++.+++... ++.+.+||..+++.   ......+..++|||||           ++|++++.|+.|++|
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~-~~~v~v~d~~~~~~~~~~~~~~~~~~va~s~DG-----------~~l~v~~~d~~v~v~  318 (346)
T d1jmxb_         251 TELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKG-----------DKLYLGGTFNDLAVF  318 (346)
T ss_dssp             SSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEECSSCCCEEEECSSS-----------SCEEEESBSSEEEEE
T ss_pred             cceeEEEEEeCCCCEEEEec-CCeEEEEECCCCcEEEEEcCCCCEEEEEEcCCC-----------CEEEEEeCCCcEEEE
Confidence            34677888999988877655 46799999999887   2223356789999999           999999999999999


Q ss_pred             ECCCCCCCcEEEe
Q 036317           89 SARSGKEPPVIKW  101 (106)
Q Consensus        89 d~~~~~~v~~i~~  101 (106)
                      |+++++.+..+..
T Consensus       319 D~~t~~~i~~i~~  331 (346)
T d1jmxb_         319 NPDTLEKVKNIKL  331 (346)
T ss_dssp             ETTTTEEEEEEEC
T ss_pred             ECccCCEEEEEEC
Confidence            9999986666654

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=98.87  E-value=1.6e-08  Score=66.10  Aligned_cols=81  Identities=11%  Similarity=0.148  Sum_probs=62.9

Q ss_pred             CCeeEEEECCCCCeEE-EEeCCCeEEEEEcCCCce---eccCCCcEEEEEecCCcceeeeeeecccE-EEEecCCCcEEE
Q 036317           13 SDANEVKLSNDGRLML-LTTLEGHIHVLHSFQGTL---PVSHNSTLEASFSQHLSLVALSVLILRSW-VLEGSGDGSVYA   87 (106)
Q Consensus        13 ~~v~~v~~spdg~~l~-~~~~~~~i~l~d~~~~~~---~~~~~~~~~~~fs~d~~~~~~~~~~~~~~-i~t~s~d~~i~~   87 (106)
                      .....++|||||++++ ++..++.|.+||..+++.   ......+..+.|++++           ++ ++++..++.+.+
T Consensus        32 ~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~  100 (301)
T d1l0qa2          32 SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDG-----------KQVYVTNMASSTLSV  100 (301)
T ss_dssp             SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEECTTS-----------SEEEEEETTTTEEEE
T ss_pred             CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeecccccccccccccc-----------ccccccccccceeee
Confidence            3578999999999885 556789999999999887   2233345779999999           65 455667789999


Q ss_pred             EECCCCC---------CCcEEEeCCC
Q 036317           88 WSARSGK---------EPPVIKWAPG  104 (106)
Q Consensus        88 wd~~~~~---------~v~~i~~sp~  104 (106)
                      |+..+++         .+.++.|+|+
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~d  126 (301)
T d1l0qa2         101 IDTTSNTVAGTVKTGKSPLGLALSPD  126 (301)
T ss_dssp             EETTTTEEEEEEECSSSEEEEEECTT
T ss_pred             cccccceeeeeccccccceEEEeecC
Confidence            9999887         5567777775

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.82  E-value=8.7e-09  Score=73.17  Aligned_cols=63  Identities=10%  Similarity=0.027  Sum_probs=51.3

Q ss_pred             CCCCCeEEEEeCCCeEEEEEcCCCce---eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEEECCCCC
Q 036317           21 SNDGRLMLLTTLEGHIHVLHSFQGTL---PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSARSGK   94 (106)
Q Consensus        21 spdg~~l~~~~~~~~i~l~d~~~~~~---~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd~~~~~   94 (106)
                      +++.-.+++...++++.|||..++++   ......+..+.|||||           ++++++++|+++++||+.+++
T Consensus        29 ~~~~~~~v~~~d~g~v~v~D~~t~~v~~~~~~g~~~~~v~fSpDG-----------~~l~~~s~dg~v~~~d~~t~~   94 (432)
T d1qksa2          29 DLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASG-----------RYLFVIGRDGKVNMIDLWMKE   94 (432)
T ss_dssp             CGGGEEEEEETTTTEEEEEETTTCCEEEEEECSSCEEEEEECTTS-----------CEEEEEETTSEEEEEETTSSS
T ss_pred             CCCcEEEEEEcCCCEEEEEECCCCcEEEEEeCCCCeeEEEECCCC-----------CEEEEEcCCCCEEEEEeeCCC
Confidence            33434457888999999999999998   1222356789999999           999999999999999999876

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.79  E-value=3.8e-09  Score=71.15  Aligned_cols=79  Identities=11%  Similarity=0.070  Sum_probs=54.4

Q ss_pred             eeEEEECCCCCeEEEEe-----CCCeEEEEEcCCCce--eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEE
Q 036317           15 ANEVKLSNDGRLMLLTT-----LEGHIHVLHSFQGTL--PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYA   87 (106)
Q Consensus        15 v~~v~~spdg~~l~~~~-----~~~~i~l~d~~~~~~--~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~   87 (106)
                      +.-.+.+|||+.+++..     .+.++.+||..++++  ....+....++|||||++|+++.... ..+..++.|+.|++
T Consensus         4 ~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~~~a~SpDg~~l~v~~~~~-~~~~~g~~d~~v~v   82 (355)
T d2bbkh_           4 RILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLPNPVVADDGSFIAHASTVF-SRIARGERTDYVEV   82 (355)
T ss_dssp             CBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSCEEEECTTSSCEEEEEEEE-EETTEEEEEEEEEE
T ss_pred             cEeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCCCceEEcCCCCEEEEEeCCC-ccccccCCCCEEEE
Confidence            33446689999987764     456899999999987  22223334689999995554433322 22234566889999


Q ss_pred             EECCCCC
Q 036317           88 WSARSGK   94 (106)
Q Consensus        88 wd~~~~~   94 (106)
                      ||+++++
T Consensus        83 ~D~~t~~   89 (355)
T d2bbkh_          83 FDPVTLL   89 (355)
T ss_dssp             ECTTTCC
T ss_pred             EECCCCC
Confidence            9999988

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.64  E-value=4.7e-08  Score=65.60  Aligned_cols=74  Identities=19%  Similarity=0.146  Sum_probs=56.2

Q ss_pred             eeEEEECCCCCeEEEEeCC----------CeEEEEEcCCCcee---ccCCCcEEEEEecCCcceeeeeeeccc--EEEEe
Q 036317           15 ANEVKLSNDGRLMLLTTLE----------GHIHVLHSFQGTLP---VSHNSTLEASFSQHLSLVALSVLILRS--WVLEG   79 (106)
Q Consensus        15 v~~v~~spdg~~l~~~~~~----------~~i~l~d~~~~~~~---~~~~~~~~~~fs~d~~~~~~~~~~~~~--~i~t~   79 (106)
                      ...++++||++.++....+          .++.+||..+++..   .....+..+.|+|||           +  .++++
T Consensus       251 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~~~~~~~a~spDG-----------~~~l~v~~  319 (355)
T d2bbkh_         251 WQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDE-----------KPLLYALS  319 (355)
T ss_dssp             SSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSS-----------SCEEEEEE
T ss_pred             eEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecCCCCEEEEEEcCCC-----------CeEEEEEE
Confidence            3468899999988776543          47899999998871   122345679999999           7  46778


Q ss_pred             cCCCcEEEEECCCCCCCcEE
Q 036317           80 SGDGSVYAWSARSGKEPPVI   99 (106)
Q Consensus        80 s~d~~i~~wd~~~~~~v~~i   99 (106)
                      +.|++|++||+++|+.+..+
T Consensus       320 ~~d~~i~v~D~~tg~~~~~i  339 (355)
T d2bbkh_         320 TGDKTLYIHDAESGEELRSV  339 (355)
T ss_dssp             TTTTEEEEEETTTCCEEEEE
T ss_pred             CCCCEEEEEECCCCCEEEEE
Confidence            88999999999999944444

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=98.62  E-value=9.7e-08  Score=63.26  Aligned_cols=67  Identities=12%  Similarity=0.038  Sum_probs=51.1

Q ss_pred             EEEEeCCCeEEEEEcCCC-ce-----eccCCCcEEEEEecCCcceeeeeeecccEE-EEecCCCcEEEEECCCCC-----
Q 036317           27 MLLTTLEGHIHVLHSFQG-TL-----PVSHNSTLEASFSQHLSLVALSVLILRSWV-LEGSGDGSVYAWSARSGK-----   94 (106)
Q Consensus        27 l~~~~~~~~i~l~d~~~~-~~-----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i-~t~s~d~~i~~wd~~~~~-----   94 (106)
                      ++++..+++|++||+.+. .+     ..+.+.+..++|||||           ++| +++..|+.|++|++....     
T Consensus         7 ~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG-----------~~L~v~~~~d~~i~~~~i~~~~~~~~~   75 (333)
T d1ri6a_           7 YIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDK-----------RYLYVGVRPEFRVLAYRIAPDDGALTF   75 (333)
T ss_dssp             EEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTS-----------SEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred             EEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCC-----------CEEEEEECCCCeEEEEEEeCCCCcEEE
Confidence            466679999999998643 22     2345566789999999           988 455668999999998654     


Q ss_pred             --------CCcEEEeCCC
Q 036317           95 --------EPPVIKWAPG  104 (106)
Q Consensus        95 --------~v~~i~~sp~  104 (106)
                              .+..++|+|+
T Consensus        76 ~~~~~~~~~p~~l~~spD   93 (333)
T d1ri6a_          76 AAESALPGSLTHISTDHQ   93 (333)
T ss_dssp             EEEEECSSCCSEEEECTT
T ss_pred             eeecccCCCceEEEEcCC
Confidence                    5778899886

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=98.60  E-value=1.7e-07  Score=63.44  Aligned_cols=74  Identities=11%  Similarity=0.056  Sum_probs=54.8

Q ss_pred             eeEEEECCCCCeEEE----------EeCCCeEEEEEcCCCce---eccCCCcEEEEEecCCcceeeeeeecccE--EEEe
Q 036317           15 ANEVKLSNDGRLMLL----------TTLEGHIHVLHSFQGTL---PVSHNSTLEASFSQHLSLVALSVLILRSW--VLEG   79 (106)
Q Consensus        15 v~~v~~spdg~~l~~----------~~~~~~i~l~d~~~~~~---~~~~~~~~~~~fs~d~~~~~~~~~~~~~~--i~t~   79 (106)
                      ...++++||+..++.          ...++++.+||..+++.   ......+..+.|+|||           +.  ++++
T Consensus       269 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~a~spDG-----------~~~l~vt~  337 (373)
T d2madh_         269 WQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDG-----------GPDLYALS  337 (373)
T ss_pred             ceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEecCCCCeeEEEECCCC-----------CEEEEEEe
Confidence            345667777765543          44567889999999886   2233456779999999           74  5789


Q ss_pred             cCCCcEEEEECCCCCCCcEE
Q 036317           80 SGDGSVYAWSARSGKEPPVI   99 (106)
Q Consensus        80 s~d~~i~~wd~~~~~~v~~i   99 (106)
                      +.|++|++||+++|+.+..+
T Consensus       338 ~~d~~v~v~D~~tg~~~~~~  357 (373)
T d2madh_         338 AGTEVLHIYDAGAGDQDQST  357 (373)
T ss_pred             CCCCeEEEEECCCCCEEEEE
Confidence            99999999999999955444

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.51  E-value=1.4e-07  Score=66.46  Aligned_cols=79  Identities=15%  Similarity=0.172  Sum_probs=60.8

Q ss_pred             CeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----e-----ccCCCcEEEEEecCCcceeeeeeecccEEEEec----
Q 036317           14 DANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----P-----VSHNSTLEASFSQHLSLVALSVLILRSWVLEGS----   80 (106)
Q Consensus        14 ~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~-----~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s----   80 (106)
                      +-.++.|.+|++++.  ..++.+.+||+.+++.    .     .+...+.+..|||||           ++|+.++    
T Consensus        18 ~~~~~~W~~d~~~~~--~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg-----------~~i~~~~~~~~   84 (470)
T d2bgra1          18 KLYSLRWISDHEYLY--KQENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDG-----------QFILLEYNYVK   84 (470)
T ss_dssp             CCCCCEECSSSEEEE--ESSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTS-----------SEEEEEEEEEE
T ss_pred             cccCCEeCCCCEEEE--EcCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCC-----------CEEEEEECCcc
Confidence            445688999999765  4678899999999876    1     122456789999999           7766653    


Q ss_pred             -----CCCcEEEEECCCCC---------CCcEEEeCCCC
Q 036317           81 -----GDGSVYAWSARSGK---------EPPVIKWAPGS  105 (106)
Q Consensus        81 -----~d~~i~~wd~~~~~---------~v~~i~~sp~~  105 (106)
                           .++.+++||+++++         .+..+.|||+-
T Consensus        85 ~~r~s~~~~~~l~d~~~~~~~~l~~~~~~~~~~~~SPDG  123 (470)
T d2bgra1          85 QWRHSYTASYDIYDLNKRQLITEERIPNNTQWVTWSPVG  123 (470)
T ss_dssp             CSSSCEEEEEEEEETTTTEECCSSCCCTTEEEEEECSST
T ss_pred             eeeeccCceEEEEECCCCcccccccCCccccccccccCc
Confidence                 35689999999987         67889999973

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.36  E-value=4.4e-07  Score=61.97  Aligned_cols=68  Identities=9%  Similarity=-0.009  Sum_probs=51.9

Q ss_pred             eEEEECCCCCeEEEEeC----------CCeEEEEEcCCCce----eccC-------CCcEEEEEecCCcceeeeeeeccc
Q 036317           16 NEVKLSNDGRLMLLTTL----------EGHIHVLHSFQGTL----PVSH-------NSTLEASFSQHLSLVALSVLILRS   74 (106)
Q Consensus        16 ~~v~~spdg~~l~~~~~----------~~~i~l~d~~~~~~----~~~~-------~~~~~~~fs~d~~~~~~~~~~~~~   74 (106)
                      ..++|+|||+++++++.          ++.|.+||..+++.    ....       .....+.|||||           +
T Consensus        68 ~~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDG-----------k  136 (368)
T d1mdah_          68 SLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASS-----------A  136 (368)
T ss_dssp             CEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTS-----------S
T ss_pred             CcceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCC-----------C
Confidence            46899999999987653          57899999999886    1111       112348999999           8


Q ss_pred             EEEEec-CCCcEEEEECCCCC
Q 036317           75 WVLEGS-GDGSVYAWSARSGK   94 (106)
Q Consensus        75 ~i~t~s-~d~~i~~wd~~~~~   94 (106)
                      +++.++ .++.+.+||+.+++
T Consensus       137 ~l~va~~~~~~v~~~d~~~~~  157 (368)
T d1mdah_         137 CLLFFLFGSSAAAGLSVPGAS  157 (368)
T ss_dssp             CEEEEECSSSCEEEEEETTTE
T ss_pred             EEEEEeCCCCeEEEEECCCCc
Confidence            877665 56899999999887

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.15  E-value=1.9e-06  Score=58.72  Aligned_cols=74  Identities=11%  Similarity=0.085  Sum_probs=54.0

Q ss_pred             eeEEEECCCCCeEEEEeCC---------CeEEEEEcCCCcee---ccCCCcEEEEEecCCcceeeeeeecccE--EEEec
Q 036317           15 ANEVKLSNDGRLMLLTTLE---------GHIHVLHSFQGTLP---VSHNSTLEASFSQHLSLVALSVLILRSW--VLEGS   80 (106)
Q Consensus        15 v~~v~~spdg~~l~~~~~~---------~~i~l~d~~~~~~~---~~~~~~~~~~fs~d~~~~~~~~~~~~~~--i~t~s   80 (106)
                      ...++++|+++.++....+         .++.+||..+++..   .....+..+.|+|||           +.  ++++.
T Consensus       266 ~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~a~spDG-----------~~~ly~s~~  334 (368)
T d1mdah_         266 FQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDG-----------ASDNYANSA  334 (368)
T ss_dssp             SSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSS-----------SCEEEEEET
T ss_pred             ceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecCCCceeEEEECCCC-----------CEEEEEEeC
Confidence            3468899999887665433         35889999999871   122245568999999           73  46777


Q ss_pred             CCCcEEEEECCCCCCCcEE
Q 036317           81 GDGSVYAWSARSGKEPPVI   99 (106)
Q Consensus        81 ~d~~i~~wd~~~~~~v~~i   99 (106)
                      .+++|++||.++|+.+..+
T Consensus       335 ~~~~v~v~D~~tgk~~~~i  353 (368)
T d1mdah_         335 GTEVLDIYDAASDQDQSSV  353 (368)
T ss_dssp             TTTEEEEEESSSCEEEEEC
T ss_pred             CCCeEEEEECCCCCEEEEE
Confidence            8899999999999844443

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.11  E-value=2.6e-05  Score=50.35  Aligned_cols=80  Identities=19%  Similarity=0.236  Sum_probs=53.9

Q ss_pred             CeeEEEECCCCCeEEEEeCCC---eEEEEEcCCCce--eccCCCcEEEEEecCCcceeeeeeecccEEEEec---CCCcE
Q 036317           14 DANEVKLSNDGRLMLLTTLEG---HIHVLHSFQGTL--PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGS---GDGSV   85 (106)
Q Consensus        14 ~v~~v~~spdg~~l~~~~~~~---~i~l~d~~~~~~--~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s---~d~~i   85 (106)
                      ......++|||+.++....++   .+.+.|...+..  ...........|||||           ++|+..+   ....+
T Consensus       172 ~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~~SPDG-----------~~i~f~s~~~~~~~l  240 (269)
T d2hqsa1         172 QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNG-----------TMVIYSSSQGMGSVL  240 (269)
T ss_dssp             EEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCSSSCEEEEECTTS-----------SEEEEEEEETTEEEE
T ss_pred             cccccccccccceeEEEeecCCceeeeEeecccccceEeecCccccceEECCCC-----------CEEEEEEcCCCCcEE
Confidence            456788999999998776554   444556555544  2233445678999999           5554332   23478


Q ss_pred             EEEECCCCC---------CCcEEEeCCC
Q 036317           86 YAWSARSGK---------EPPVIKWAPG  104 (106)
Q Consensus        86 ~~wd~~~~~---------~v~~i~~sp~  104 (106)
                      +++++..++         .+...+|||.
T Consensus       241 ~~~~~dg~~~~~lt~~~g~~~~p~WSP~  268 (269)
T d2hqsa1         241 NLVSTDGRFKARLPATDGQVKFPAWSPY  268 (269)
T ss_dssp             EEEETTSCCEEECCCSSSEEEEEEECCC
T ss_pred             EEEECCCCCEEEEeCCCCcEEeEEeCCC
Confidence            899998765         4566789995

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.83  E-value=4.9e-05  Score=48.90  Aligned_cols=69  Identities=17%  Similarity=0.242  Sum_probs=45.1

Q ss_pred             EEECCC--CCeEEEEeCCCeEEEEEcCCCce---eccCCCcEEEEEecCCcceeeeeeecccEEEEecCC--CcEEEEEC
Q 036317           18 VKLSND--GRLMLLTTLEGHIHVLHSFQGTL---PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGD--GSVYAWSA   90 (106)
Q Consensus        18 v~~spd--g~~l~~~~~~~~i~l~d~~~~~~---~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d--~~i~~wd~   90 (106)
                      +..|||  |++++... ++.+.+.|+.+++.   ....+......|||||++||+..-.       .+.+  ..|++.++
T Consensus         4 ~~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~-------~~~~~~~~i~~~~~   75 (281)
T d1k32a2           4 LLLNPDIHGDRIIFVC-CDDLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMR-------GSSLNTADLYFYNG   75 (281)
T ss_dssp             CCEEEEEETTEEEEEE-TTEEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEE-------STTCCEEEEEEEET
T ss_pred             cccCCCCCCCEEEEEe-CCcEEEEECCCCCEEEEecCCCcccCEEECCCCCEEEEEEee-------CCCCCceEEEEEEe
Confidence            346899  99998765 45799999998887   2344455678999999444432211       1111  24777777


Q ss_pred             CCCC
Q 036317           91 RSGK   94 (106)
Q Consensus        91 ~~~~   94 (106)
                      .+++
T Consensus        76 ~~g~   79 (281)
T d1k32a2          76 ENGE   79 (281)
T ss_dssp             TTTE
T ss_pred             cCCc
Confidence            7765

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=97.72  E-value=0.00017  Score=48.05  Aligned_cols=68  Identities=13%  Similarity=0.091  Sum_probs=51.2

Q ss_pred             CeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce--eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEEECC
Q 036317           14 DANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL--PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSAR   91 (106)
Q Consensus        14 ~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~--~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd~~   91 (106)
                      .+.+++++|||+.+++...+++|..+|......  ......+..++|++||           +.+++...++.+..|+..
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~~~~~~~~~~~~~gla~~~dG-----------~l~v~~~~~~~~~~~~~~   97 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPDGNQQIHATVEGKVSGLAFTSNG-----------DLVATGWNADSIPVVSLV   97 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEEECSSEEEEEEECTTS-----------CEEEEEECTTSCEEEEEE
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCCCCEEEEEcCCCCcceEEEcCCC-----------CeEEEecCCceEEEEEec
Confidence            688999999999888888899999988643322  2233456679999999           777777777777777655


Q ss_pred             C
Q 036317           92 S   92 (106)
Q Consensus        92 ~   92 (106)
                      .
T Consensus        98 ~   98 (302)
T d2p4oa1          98 K   98 (302)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.66  E-value=8.2e-05  Score=53.01  Aligned_cols=69  Identities=14%  Similarity=0.084  Sum_probs=46.4

Q ss_pred             CeeEEEECCCCCeEEEEeC---------CCeEEEEEcCCCcee------ccCCCcEEEEEecCCcceeeeeeecccEEEE
Q 036317           14 DANEVKLSNDGRLMLLTTL---------EGHIHVLHSFQGTLP------VSHNSTLEASFSQHLSLVALSVLILRSWVLE   78 (106)
Q Consensus        14 ~v~~v~~spdg~~l~~~~~---------~~~i~l~d~~~~~~~------~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t   78 (106)
                      .+....|||||++++...+         .+.+.++|+.+++..      .....+..+.|||||           +.||-
T Consensus        62 ~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG-----------~~iaf  130 (465)
T d1xfda1          62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKG-----------QQLIF  130 (465)
T ss_dssp             TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSST-----------TCEEE
T ss_pred             ccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeeeccCC-----------ceEEE
Confidence            6778899999999988754         467889999988761      122334458999999           55544


Q ss_pred             ecCCCcEEEEECCCCC
Q 036317           79 GSGDGSVYAWSARSGK   94 (106)
Q Consensus        79 ~s~d~~i~~wd~~~~~   94 (106)
                      .. ++.+++.+..+++
T Consensus       131 v~-~~nl~~~~~~~~~  145 (465)
T d1xfda1         131 IF-ENNIYYCAHVGKQ  145 (465)
T ss_dssp             EE-TTEEEEESSSSSC
T ss_pred             Ee-cceEEEEecCCCc
Confidence            43 3355555554443

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=97.65  E-value=0.0006  Score=46.67  Aligned_cols=70  Identities=4%  Similarity=0.107  Sum_probs=50.1

Q ss_pred             CeeEEEECCCCCeEEEEeC-CCeEEEEEcC-CCce--------eccCCCcEEEEEecCCcceeeeeeecccEEE-EecCC
Q 036317           14 DANEVKLSNDGRLMLLTTL-EGHIHVLHSF-QGTL--------PVSHNSTLEASFSQHLSLVALSVLILRSWVL-EGSGD   82 (106)
Q Consensus        14 ~v~~v~~spdg~~l~~~~~-~~~i~l~d~~-~~~~--------~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~-t~s~d   82 (106)
                      .+..+.|+|||++++++.. .+.|.+++.. ++..        ......+..+.|+|++           +++. +...+
T Consensus       146 h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg-----------~~~yv~~e~~  214 (365)
T d1jofa_         146 GIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTG-----------NYLYALMEAG  214 (365)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTS-----------SEEEEEETTT
T ss_pred             cceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCC-----------ceEEEeccCC
Confidence            4679999999999887753 4678888753 3443        1122345679999999           7764 44557


Q ss_pred             CcEEEEECCCCC
Q 036317           83 GSVYAWSARSGK   94 (106)
Q Consensus        83 ~~i~~wd~~~~~   94 (106)
                      ++|.+|++..++
T Consensus       215 ~~V~v~~~~~~~  226 (365)
T d1jofa_         215 NRICEYVIDPAT  226 (365)
T ss_dssp             TEEEEEEECTTT
T ss_pred             CEEEEEEecCCC
Confidence            799999987664

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=97.06  E-value=0.0033  Score=42.06  Aligned_cols=66  Identities=14%  Similarity=0.218  Sum_probs=52.3

Q ss_pred             eeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccE-EEEecCCCcEEEEE
Q 036317           15 ANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSW-VLEGSGDGSVYAWS   89 (106)
Q Consensus        15 v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~-i~t~s~d~~i~~wd   89 (106)
                      ...++++++|+.+++....+.|.++|...++.    ......+..++|.||+           +. .+|.+.++.|+..+
T Consensus       228 pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~-----------~~lyVt~~~~g~i~~~~  296 (314)
T d1pjxa_         228 ADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQT-----------KTIFVTEHENNAVWKFE  296 (314)
T ss_dssp             EEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTS-----------SEEEEEETTTTEEEEEE
T ss_pred             ceeeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCC-----------CEEEEEECCCCcEEEEE
Confidence            45799999999888888889999999887765    2233456789999998           64 46777888898888


Q ss_pred             CC
Q 036317           90 AR   91 (106)
Q Consensus        90 ~~   91 (106)
                      +.
T Consensus       297 ~~  298 (314)
T d1pjxa_         297 WQ  298 (314)
T ss_dssp             CS
T ss_pred             CC
Confidence            76

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.97  E-value=0.014  Score=37.54  Aligned_cols=81  Identities=12%  Similarity=0.108  Sum_probs=59.0

Q ss_pred             CCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEE
Q 036317           13 SDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAW   88 (106)
Q Consensus        13 ~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~w   88 (106)
                      .....++++|+|+.+++...++.+..+|......    ......+..++++++|           +..++-..++.|..+
T Consensus       140 ~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g-----------~l~vsd~~~~~i~~~  208 (260)
T d1rwia_         140 NDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAG-----------TVYVTEHNTNQVVKL  208 (260)
T ss_dssp             CSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTC-----------CEEEEETTTTEEEEE
T ss_pred             CCcceeeecCCCCEeeeccccccccccccccceeeeeeccccCCCccceeeeee-----------eeeeeecCCCEEEEE
Confidence            3567899999999878878888999999765443    1233456779999999           877777777788887


Q ss_pred             ECCCCC----------CCcEEEeCCC
Q 036317           89 SARSGK----------EPPVIKWAPG  104 (106)
Q Consensus        89 d~~~~~----------~v~~i~~sp~  104 (106)
                      +.....          .+..|+++++
T Consensus       209 ~~~~~~~~~~~~~~~~~P~~i~~d~~  234 (260)
T d1rwia_         209 LAGSTTSTVLPFTGLNTPLAVAVDSD  234 (260)
T ss_dssp             CTTCSCCEECCCCSCCCEEEEEECTT
T ss_pred             eCCCCeEEEEccCCCCCeEEEEEeCC
Confidence            765433          4556776654

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.96  E-value=0.011  Score=38.39  Aligned_cols=70  Identities=17%  Similarity=0.272  Sum_probs=50.8

Q ss_pred             CCCeeEEEECCCCCeEEEEeC-CCeEEEEEcCCCce------eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCc
Q 036317           12 VSDANEVKLSNDGRLMLLTTL-EGHIHVLHSFQGTL------PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGS   84 (106)
Q Consensus        12 ~~~v~~v~~spdg~~l~~~~~-~~~i~l~d~~~~~~------~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~   84 (106)
                      ......++++|+|+.+++-.. ++.|.+++. +|+.      ......+..+++.+||           +.+++ +.+..
T Consensus       199 ~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G~~~~~~~~~~~~~~p~~vav~~dG-----------~l~V~-~~n~~  265 (279)
T d1q7fa_         199 TNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDG-----------SVVLA-SKDYR  265 (279)
T ss_dssp             SCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTT-----------EEEEE-ETTTE
T ss_pred             ccCCcccccccCCeEEEEECCCCcEEEEECC-CCCEEEEEeCCCCCCCEeEEEEeCCC-----------cEEEE-eCCCe
Confidence            346789999999996666443 456888884 5664      1122356778999999           87665 46889


Q ss_pred             EEEEECCCCC
Q 036317           85 VYAWSARSGK   94 (106)
Q Consensus        85 i~~wd~~~~~   94 (106)
                      |++|..+...
T Consensus       266 v~~fr~~~~~  275 (279)
T d1q7fa_         266 LYIYRYVQLA  275 (279)
T ss_dssp             EEEEECSCCC
T ss_pred             EEEEEeeeec
Confidence            9999998754

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=96.93  E-value=0.0022  Score=45.59  Aligned_cols=49  Identities=4%  Similarity=0.017  Sum_probs=36.5

Q ss_pred             CeeEEEECCCCCeEEEEe-CCCeEEEEEcCCCce----ec-cCCCcEEEEEecCC
Q 036317           14 DANEVKLSNDGRLMLLTT-LEGHIHVLHSFQGTL----PV-SHNSTLEASFSQHL   62 (106)
Q Consensus        14 ~v~~v~~spdg~~l~~~~-~~~~i~l~d~~~~~~----~~-~~~~~~~~~fs~d~   62 (106)
                      ......++|||+++.++. .++.|.++|+.+++.    .. ....+-.+.|+||+
T Consensus        73 ~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg  127 (441)
T d1qnia2          73 HISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVP  127 (441)
T ss_dssp             EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSS
T ss_pred             CcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccC
Confidence            345556689999997664 778999999999876    11 22345569999999

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=96.85  E-value=0.0017  Score=46.24  Aligned_cols=67  Identities=15%  Similarity=0.136  Sum_probs=49.4

Q ss_pred             CeeEEEECCCCCeEEE-EeCCCeEEEEEcCCCce------------ecc--C-CCcEEEEEecCCcceeeeeeecccEEE
Q 036317           14 DANEVKLSNDGRLMLL-TTLEGHIHVLHSFQGTL------------PVS--H-NSTLEASFSQHLSLVALSVLILRSWVL   77 (106)
Q Consensus        14 ~v~~v~~spdg~~l~~-~~~~~~i~l~d~~~~~~------------~~~--~-~~~~~~~fs~d~~~~~~~~~~~~~~i~   77 (106)
                      ....+.+||||+|+++ +..++++.+||..+.+.            ...  . -.+....|+++|           .-..
T Consensus       259 sPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g-----------~~yt  327 (441)
T d1qnia2         259 NPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRG-----------NAYT  327 (441)
T ss_dssp             SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSS-----------EEEE
T ss_pred             CccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCCc-----------eEEE
Confidence            3567999999999865 46889999999765321            001  1 123456899999           8888


Q ss_pred             EecCCCcEEEEECC
Q 036317           78 EGSGDGSVYAWSAR   91 (106)
Q Consensus        78 t~s~d~~i~~wd~~   91 (106)
                      +...|.+|..|+++
T Consensus       328 s~~~ds~v~kw~~~  341 (441)
T d1qnia2         328 TLFIDSQVCKWNIA  341 (441)
T ss_dssp             EETTTTEEEEEEHH
T ss_pred             cccccceEEEeccc
Confidence            88899999999974

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.83  E-value=0.0067  Score=38.38  Aligned_cols=55  Identities=18%  Similarity=0.151  Sum_probs=39.3

Q ss_pred             CCeeEEEECCCCCeEEEEeCCC---eEEEEEcCCCce---eccCCCcEEEEEecCCcceee
Q 036317           13 SDANEVKLSNDGRLMLLTTLEG---HIHVLHSFQGTL---PVSHNSTLEASFSQHLSLVAL   67 (106)
Q Consensus        13 ~~v~~v~~spdg~~l~~~~~~~---~i~l~d~~~~~~---~~~~~~~~~~~fs~d~~~~~~   67 (106)
                      ..+.+-+|||||++||....+.   .+.+.+..++..   ...........|+|||+.+++
T Consensus        39 ~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~i~~   99 (269)
T d2hqsa1          39 QPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAF   99 (269)
T ss_dssp             SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred             CceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeEEeeeecccccceecCCCCeeeE
Confidence            3566889999999999775443   466777776665   334455667899999966654

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=96.80  E-value=0.0055  Score=40.32  Aligned_cols=71  Identities=8%  Similarity=0.067  Sum_probs=53.7

Q ss_pred             CCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCc--e----e-ccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcE
Q 036317           13 SDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGT--L----P-VSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSV   85 (106)
Q Consensus        13 ~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~--~----~-~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i   85 (106)
                      +.+..++|+|||+.+++...++.+..++.....  .    . ........+.+.+++           +++++-+.++.+
T Consensus        68 ~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g-----------~~~v~~~~~~~i  136 (302)
T d2p4oa1          68 GKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDT-----------QYLTADSYRGAI  136 (302)
T ss_dssp             SEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSS-----------EEEEEETTTTEE
T ss_pred             CCcceEEEcCCCCeEEEecCCceEEEEEecccccceeeccccCCccccceeEEccCC-----------CEEeeccccccc
Confidence            478899999999988888888888888765432  2    1 122345678899999           888888888888


Q ss_pred             EEEECCCCC
Q 036317           86 YAWSARSGK   94 (106)
Q Consensus        86 ~~wd~~~~~   94 (106)
                      ..+|..++.
T Consensus       137 ~~~~~~~~~  145 (302)
T d2p4oa1         137 WLIDVVQPS  145 (302)
T ss_dssp             EEEETTTTE
T ss_pred             eeeeccCCc
Confidence            888887654

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=96.71  E-value=0.022  Score=38.52  Aligned_cols=33  Identities=12%  Similarity=0.031  Sum_probs=26.7

Q ss_pred             CCeeEEEECCCCCeEEEEe-CCCeEEEEEcCCCc
Q 036317           13 SDANEVKLSNDGRLMLLTT-LEGHIHVLHSFQGT   45 (106)
Q Consensus        13 ~~v~~v~~spdg~~l~~~~-~~~~i~l~d~~~~~   45 (106)
                      ...+.+.|+|||+++.+.. .+++|.+|+...++
T Consensus       193 ~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~  226 (365)
T d1jofa_         193 DHPRWVAMHPTGNYLYALMEAGNRICEYVIDPAT  226 (365)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTT
T ss_pred             CceEEEEECCCCceEEEeccCCCEEEEEEecCCC
Confidence            4688999999999886555 67899999986654

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=96.58  E-value=0.0048  Score=39.06  Aligned_cols=56  Identities=16%  Similarity=0.211  Sum_probs=37.8

Q ss_pred             CCCeeEEEECCCCCeEEEEeCC------CeEEEEEcCCCceec----------cCCCcEEEEEecCCcceee
Q 036317           12 VSDANEVKLSNDGRLMLLTTLE------GHIHVLHSFQGTLPV----------SHNSTLEASFSQHLSLVAL   67 (106)
Q Consensus        12 ~~~v~~v~~spdg~~l~~~~~~------~~i~l~d~~~~~~~~----------~~~~~~~~~fs~d~~~~~~   67 (106)
                      .+.+...+|||||++|+....+      ..+.+++..+++...          .........|+|||+.|++
T Consensus        40 ~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~  111 (281)
T d1k32a2          40 LGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIIS  111 (281)
T ss_dssp             SSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEE
T ss_pred             CCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeeecCCCccCccccccccccCCCCCEEEE
Confidence            3467889999999999866421      247788888887611          1112345789999965554

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=96.36  E-value=0.038  Score=36.62  Aligned_cols=69  Identities=7%  Similarity=0.043  Sum_probs=46.9

Q ss_pred             CeeEEEECCCCCeEEEEeC-------CCeEEEEEcCCCcee--------ccCCCcEEEEEecCCcceeeeeeecccEEEE
Q 036317           14 DANEVKLSNDGRLMLLTTL-------EGHIHVLHSFQGTLP--------VSHNSTLEASFSQHLSLVALSVLILRSWVLE   78 (106)
Q Consensus        14 ~v~~v~~spdg~~l~~~~~-------~~~i~l~d~~~~~~~--------~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t   78 (106)
                      .....+|+|||+.+++...       +++|..||..++...        ...+....+.|++++           ..++.
T Consensus        19 g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg-----------~~l~v   87 (314)
T d1pjxa_          19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDA-----------NQLFV   87 (314)
T ss_dssp             TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSS-----------SEEEE
T ss_pred             CCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCC-----------CEEEE
Confidence            5678899999997766433       367889998888751        112235679999999           65555


Q ss_pred             ecCCCcEEEEECCCC
Q 036317           79 GSGDGSVYAWSARSG   93 (106)
Q Consensus        79 ~s~d~~i~~wd~~~~   93 (106)
                      ++....+...+.+.+
T Consensus        88 ad~~~~i~~~~~~g~  102 (314)
T d1pjxa_          88 ADMRLGLLVVQTDGT  102 (314)
T ss_dssp             EETTTEEEEEETTSC
T ss_pred             EECCCeEEEEeCCCc
Confidence            555555677766543

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.36  E-value=0.047  Score=35.22  Aligned_cols=73  Identities=8%  Similarity=0.105  Sum_probs=49.5

Q ss_pred             CCCCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce-----eccCCCcEEEEEecCCcceeeeeeecccEEEEecC-CC
Q 036317           10 GDVSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL-----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSG-DG   83 (106)
Q Consensus        10 ~~~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~-----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~-d~   83 (106)
                      .+......++++++|+.+++....+.|+++|......     ......+..+++.++|           +.+++-.. ++
T Consensus       154 ~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~G~~~~~~g~~g~~~~P~giavD~~G-----------~i~Vad~~~~~  222 (279)
T d1q7fa_         154 KHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNG-----------EILIADNHNNF  222 (279)
T ss_dssp             TTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTC-----------CEEEEECSSSC
T ss_pred             ccccccceeeeccceeEEeeeccccceeeeecCCceeeeecccccccCCcccccccCC-----------eEEEEECCCCc
Confidence            3345678899999999888888889999999743322     1233456778999999           76655433 34


Q ss_pred             cEEEEECCCCC
Q 036317           84 SVYAWSARSGK   94 (106)
Q Consensus        84 ~i~~wd~~~~~   94 (106)
                      .|.+++. +|+
T Consensus       223 ~v~~f~~-~G~  232 (279)
T d1q7fa_         223 NLTIFTQ-DGQ  232 (279)
T ss_dssp             EEEEECT-TSC
T ss_pred             EEEEECC-CCC
Confidence            5777763 344

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.18  E-value=0.0031  Score=44.54  Aligned_cols=77  Identities=16%  Similarity=0.179  Sum_probs=53.3

Q ss_pred             EEEECCCCCeEEEEeCCCeEEEEEcCCCce----ec---cCCCcEEEEEecCCcceeeeeeecccEEEEe---------c
Q 036317           17 EVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PV---SHNSTLEASFSQHLSLVALSVLILRSWVLEG---------S   80 (106)
Q Consensus        17 ~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~---~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~---------s   80 (106)
                      ...|.++++++. ...++.+.++|+.+++.    ..   ....+....||||+           ++|+..         +
T Consensus        21 ~~~W~~~~~~~~-~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~-----------~~vl~~~~~~~~~r~s   88 (465)
T d1xfda1          21 EAKWISDTEFIY-REQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDR-----------EYALFSYNVEPIYQHS   88 (465)
T ss_dssp             CCCBSSSSCBCC-CCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTS-----------SEEEEEESCCCCSSSC
T ss_pred             CCEEeCCCcEEE-EeCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCC-----------CeEEEEEcccceeEee
Confidence            456889988664 35677899999988765    11   11234567899999           555543         3


Q ss_pred             CCCcEEEEECCCCC------------CCcEEEeCCCC
Q 036317           81 GDGSVYAWSARSGK------------EPPVIKWAPGS  105 (106)
Q Consensus        81 ~d~~i~~wd~~~~~------------~v~~i~~sp~~  105 (106)
                      ..+...++|+++++            .++..+|||+-
T Consensus        89 ~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG  125 (465)
T d1xfda1          89 YTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKG  125 (465)
T ss_dssp             CCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSST
T ss_pred             ccccEEEEEccCCceeeccCccCCccccceeeeccCC
Confidence            45789999999886            34457788863

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=96.13  E-value=0.037  Score=36.63  Aligned_cols=68  Identities=21%  Similarity=0.328  Sum_probs=47.8

Q ss_pred             eeEEEECCCCCeEE-EEeCCCeEEEEEcCC-Cce--------e---ccCCCcEEEEEecCCcceeeeeeecccEEEEecC
Q 036317           15 ANEVKLSNDGRLML-LTTLEGHIHVLHSFQ-GTL--------P---VSHNSTLEASFSQHLSLVALSVLILRSWVLEGSG   81 (106)
Q Consensus        15 v~~v~~spdg~~l~-~~~~~~~i~l~d~~~-~~~--------~---~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~   81 (106)
                      .+.++|+|||+.|. +-+..+.|..+|... +..        .   .....+-.+++.++|           +..++...
T Consensus       179 pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G-----------~l~Va~~~  247 (319)
T d2dg1a1         179 ANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDD-----------NLYVAMYG  247 (319)
T ss_dssp             EEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTC-----------CEEEEEET
T ss_pred             eeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCC-----------CEEEEEcC
Confidence            45699999998764 546778999998653 222        0   111224568899999           87777777


Q ss_pred             CCcEEEEECCCCC
Q 036317           82 DGSVYAWSARSGK   94 (106)
Q Consensus        82 d~~i~~wd~~~~~   94 (106)
                      ++.|.++|- +|+
T Consensus       248 ~g~V~~~~p-~G~  259 (319)
T d2dg1a1         248 QGRVLVFNK-RGY  259 (319)
T ss_dssp             TTEEEEECT-TSC
T ss_pred             CCEEEEECC-CCc
Confidence            889999985 566

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.97  E-value=0.089  Score=33.45  Aligned_cols=70  Identities=10%  Similarity=0.048  Sum_probs=49.2

Q ss_pred             CCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEE
Q 036317           13 SDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAW   88 (106)
Q Consensus        13 ~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~w   88 (106)
                      .....++++++|+.+++-..+..+..++......    ......+..+++++++           +.+++...++.|..+
T Consensus        98 ~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g-----------~~~v~~~~~~~i~~~  166 (260)
T d1rwia_          98 NYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSG-----------NVYVTDTDNNRVVKL  166 (260)
T ss_dssp             CSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTC-----------CEEEEEGGGTEEEEE
T ss_pred             eecccccccccceeEeeccccccccccccccceeeeeeecccCCcceeeecCCC-----------CEeeecccccccccc
Confidence            3678999999999877777777787777655443    1122345678889999           766666666777777


Q ss_pred             ECCCC
Q 036317           89 SARSG   93 (106)
Q Consensus        89 d~~~~   93 (106)
                      |.+..
T Consensus       167 d~~~~  171 (260)
T d1rwia_         167 EAESN  171 (260)
T ss_dssp             CTTTC
T ss_pred             ccccc
Confidence            76643

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=95.55  E-value=0.16  Score=33.34  Aligned_cols=53  Identities=15%  Similarity=0.280  Sum_probs=39.6

Q ss_pred             CeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce----eccCCCcEEEEEecCCccee
Q 036317           14 DANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL----PVSHNSTLEASFSQHLSLVA   66 (106)
Q Consensus        14 ~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~----~~~~~~~~~~~fs~d~~~~~   66 (106)
                      .+..++|+++|+.+++-..++.|+-+|..+++.    ......+..+++++||++++
T Consensus        41 ~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~v   97 (319)
T d2dg1a1          41 QLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFV   97 (319)
T ss_dssp             CEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEE
T ss_pred             CcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEE
Confidence            568999999999777777889999999877654    12333456789999994443

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=94.30  E-value=0.15  Score=33.63  Aligned_cols=70  Identities=13%  Similarity=0.136  Sum_probs=48.9

Q ss_pred             CeeEEEECCCCCeEEEEeCCC-----------eEEEEEcCCCce------e-ccCCCcEEEEEecCCcceeeeeeecccE
Q 036317           14 DANEVKLSNDGRLMLLTTLEG-----------HIHVLHSFQGTL------P-VSHNSTLEASFSQHLSLVALSVLILRSW   75 (106)
Q Consensus        14 ~v~~v~~spdg~~l~~~~~~~-----------~i~l~d~~~~~~------~-~~~~~~~~~~fs~d~~~~~~~~~~~~~~   75 (106)
                      ++.......||+.++.++.+.           .+.+||..+++.      . .+........+.+|+           +.
T Consensus        21 ~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g-----------~i   89 (387)
T d1k3ia3          21 PAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNG-----------QI   89 (387)
T ss_dssp             CSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTS-----------CE
T ss_pred             ccEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCC-----------cE
Confidence            455566677899888887431           367999988765      1 122233457888999           88


Q ss_pred             EEEecCC-CcEEEEECCCCC
Q 036317           76 VLEGSGD-GSVYAWSARSGK   94 (106)
Q Consensus        76 i~t~s~d-~~i~~wd~~~~~   94 (106)
                      ++.|+.+ .++.+||..+.+
T Consensus        90 ~v~Gg~~~~~~~~yd~~~~~  109 (387)
T d1k3ia3          90 VVTGGNDAKKTSLYDSSSDS  109 (387)
T ss_dssp             EEECSSSTTCEEEEEGGGTE
T ss_pred             EEeecCCCcceeEecCccCc
Confidence            8888655 589999987765

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=93.76  E-value=0.15  Score=34.90  Aligned_cols=56  Identities=7%  Similarity=-0.076  Sum_probs=38.0

Q ss_pred             CeeEEEECCCCCeEEEEeC-----CCeEEEEEcCCCceec---cCCCcEEEEEecCCcceeeee
Q 036317           14 DANEVKLSNDGRLMLLTTL-----EGHIHVLHSFQGTLPV---SHNSTLEASFSQHLSLVALSV   69 (106)
Q Consensus        14 ~v~~v~~spdg~~l~~~~~-----~~~i~l~d~~~~~~~~---~~~~~~~~~fs~d~~~~~~~~   69 (106)
                      .+..+.+||||++++.+..     .-.++++|+.+++...   .......+.|++|++.|++..
T Consensus       126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~~~~~~~~W~~D~~~~~Y~~  189 (430)
T d1qfma1         126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNA  189 (430)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEE
T ss_pred             eecceEecCCCCEEEEEeccccCchheeEEeccCcceecccccccccccceEEcCCCCEEEEEE
Confidence            3457789999999986642     2478899999998711   111113478999996666543

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=92.48  E-value=0.45  Score=30.81  Aligned_cols=48  Identities=8%  Similarity=0.087  Sum_probs=33.9

Q ss_pred             CCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCcee-----c---cCCCcEEEEEecCC
Q 036317           13 SDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTLP-----V---SHNSTLEASFSQHL   62 (106)
Q Consensus        13 ~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~~-----~---~~~~~~~~~fs~d~   62 (106)
                      ..+.++++.++|+.+++ +. +.+.++|..+++..     .   ....+....+.|+|
T Consensus        59 ~~~~~i~~~~dg~l~va-~~-~gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G  114 (295)
T d2ghsa1          59 FMGSALAKISDSKQLIA-SD-DGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSG  114 (295)
T ss_dssp             SCEEEEEEEETTEEEEE-ET-TEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTS
T ss_pred             CCcEEEEEecCCCEEEE-Ee-CccEEeecccceeeEEeeeecCCCcccceeeEECCCC
Confidence            46889999999985554 44 46888999988761     1   11234567889999

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=92.21  E-value=0.87  Score=29.36  Aligned_cols=69  Identities=14%  Similarity=0.066  Sum_probs=45.1

Q ss_pred             CeeEEEECCCCCeEEEE-eCCCeEEEEEcCC--Cce----------eccCCCcEEEEEecCCcceeeeeeecccEEEEec
Q 036317           14 DANEVKLSNDGRLMLLT-TLEGHIHVLHSFQ--GTL----------PVSHNSTLEASFSQHLSLVALSVLILRSWVLEGS   80 (106)
Q Consensus        14 ~v~~v~~spdg~~l~~~-~~~~~i~l~d~~~--~~~----------~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s   80 (106)
                      ..+.+.|+++++.+..+ +..+.|..++...  +..          ....+.+-.+++..+|           ...++.-
T Consensus       149 ~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~G-----------nlWva~~  217 (295)
T d2ghsa1         149 IPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEG-----------HIWNARW  217 (295)
T ss_dssp             SEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTS-----------CEEEEEE
T ss_pred             CcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCC-----------CEEeeee
Confidence            45789999999976544 5678888887532  111          1122334567888888           7666655


Q ss_pred             CCCcEEEEECCCCC
Q 036317           81 GDGSVYAWSARSGK   94 (106)
Q Consensus        81 ~d~~i~~wd~~~~~   94 (106)
                      ..+.|..+|- +|+
T Consensus       218 ~~g~V~~~dp-~G~  230 (295)
T d2ghsa1         218 GEGAVDRYDT-DGN  230 (295)
T ss_dssp             TTTEEEEECT-TCC
T ss_pred             CCCceEEecC-CCc
Confidence            5667888885 455

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=91.64  E-value=0.62  Score=30.36  Aligned_cols=68  Identities=7%  Similarity=0.040  Sum_probs=47.3

Q ss_pred             eEEEECCCCCeEEEEeCC-CeEEEEEcCCCce----ec-cCCCcEEEEEecCCcceeeeeeecccEEEEecCC------C
Q 036317           16 NEVKLSNDGRLMLLTTLE-GHIHVLHSFQGTL----PV-SHNSTLEASFSQHLSLVALSVLILRSWVLEGSGD------G   83 (106)
Q Consensus        16 ~~v~~spdg~~l~~~~~~-~~i~l~d~~~~~~----~~-~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d------~   83 (106)
                      ....+.+||+.++.++.+ +.+.+||..+..-    .. .......++..+||           +.++.|+.+      .
T Consensus        79 ~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG-----------~v~v~GG~~~~~~~~~  147 (387)
T d1k3ia3          79 PGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDG-----------RVFTIGGSWSGGVFEK  147 (387)
T ss_dssp             CEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTS-----------CEEEECCCCCSSSCCC
T ss_pred             eEEEEecCCcEEEeecCCCcceeEecCccCcccccccccccccccceeeecCC-----------ceeeeccccccccccc
Confidence            456788999988877654 6899999887765    11 11112346677899           887777642      4


Q ss_pred             cEEEEECCCCC
Q 036317           84 SVYAWSARSGK   94 (106)
Q Consensus        84 ~i~~wd~~~~~   94 (106)
                      .+.+||..+.+
T Consensus       148 ~v~~yd~~~~~  158 (387)
T d1k3ia3         148 NGEVYSPSSKT  158 (387)
T ss_dssp             CEEEEETTTTE
T ss_pred             eeeeecCCCCc
Confidence            68999998765

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=90.72  E-value=0.5  Score=33.35  Aligned_cols=20  Identities=10%  Similarity=0.300  Sum_probs=17.0

Q ss_pred             CeeEEEECCCCCeEEEEeCC
Q 036317           14 DANEVKLSNDGRLMLLTTLE   33 (106)
Q Consensus        14 ~v~~v~~spdg~~l~~~~~~   33 (106)
                      ....++++|||+++++++.+
T Consensus       194 ~ld~~~~s~dGK~af~TsyN  213 (459)
T d1fwxa2         194 NLDNCDADYEGKWAFSTSYN  213 (459)
T ss_dssp             CCCCEEECSSSSEEEEEESC
T ss_pred             ChhccccCCCCCEEEEEecc
Confidence            56789999999999998754

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=89.84  E-value=0.27  Score=33.57  Aligned_cols=45  Identities=16%  Similarity=0.150  Sum_probs=31.2

Q ss_pred             EEEEEecCCcceeeeeeecccEEEEecCCCcEEEEECCCCC---------CCcEEEeCCC
Q 036317           54 LEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSARSGK---------EPPVIKWAPG  104 (106)
Q Consensus        54 ~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd~~~~~---------~v~~i~~sp~  104 (106)
                      ...++|||+++||++.-..      |++...+++.|+++|+         ....+.|+++
T Consensus       128 ~~~~~Spd~~~la~s~d~~------G~e~~~l~v~Dl~tg~~~~~~i~~~~~~~~~W~~D  181 (430)
T d1qfma1         128 RGYAFSEDGEYFAYGLSAS------GSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHD  181 (430)
T ss_dssp             EEEEECTTSSEEEEEEEET------TCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTT
T ss_pred             cceEecCCCCEEEEEeccc------cCchheeEEeccCcceecccccccccccceEEcCC
Confidence            3578899996666554322      4555689999999998         2256677665

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=89.81  E-value=0.37  Score=34.44  Aligned_cols=52  Identities=27%  Similarity=0.460  Sum_probs=33.6

Q ss_pred             CeEEEEEcCCCce--e-ccCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEEECCCCCCC
Q 036317           34 GHIHVLHSFQGTL--P-VSHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSARSGKEP   96 (106)
Q Consensus        34 ~~i~l~d~~~~~~--~-~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd~~~~~~v   96 (106)
                      +.+.-+|+.+|+.  . ....+...-..+..+           ..|..|+.|+.++.+|.++|+.+
T Consensus       466 G~l~AiD~~TG~i~W~~~~~~p~~~g~lstag-----------glVF~Gt~dg~l~A~Da~TGe~L  520 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEHLPLWAGVLATAG-----------NLVFTGTGDGYFKAFDAKSGKEL  520 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSCCEEETT-----------TEEEEECTTSEEEEEETTTCCEE
T ss_pred             CeEEEEcCCCCcEEeecCCCCCCccceeEEcC-----------CeEEEeCCCCeEEEEECCCCcEe
Confidence            4566677777776  1 111122222234456           67778999999999999999933

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=89.09  E-value=0.56  Score=33.50  Aligned_cols=25  Identities=28%  Similarity=0.207  Sum_probs=20.5

Q ss_pred             cEEEEecCCCcEEEEECCCCCCCcE
Q 036317           74 SWVLEGSGDGSVYAWSARSGKEPPV   98 (106)
Q Consensus        74 ~~i~t~s~d~~i~~wd~~~~~~v~~   98 (106)
                      ..|..|+.|+.++.+|.++|+.+..
T Consensus       476 glVf~G~~dg~l~A~Da~tGe~lW~  500 (571)
T d2ad6a1         476 GLVWYATLDGYLKALDNKDGKELWN  500 (571)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             CEEEEECCCCeEEEEECCCCcEEEE
Confidence            5677799999999999999994433

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=89.04  E-value=1  Score=31.13  Aligned_cols=50  Identities=18%  Similarity=0.320  Sum_probs=35.1

Q ss_pred             CCCeeEEEECCCCCeEEEEeCCCeEEEEEcCCCce------e------ccCCCcEEEEEecC
Q 036317           12 VSDANEVKLSNDGRLMLLTTLEGHIHVLHSFQGTL------P------VSHNSTLEASFSQH   61 (106)
Q Consensus        12 ~~~v~~v~~spdg~~l~~~~~~~~i~l~d~~~~~~------~------~~~~~~~~~~fs~d   61 (106)
                      -..-.+|+|.|||+.+++--.+|.|++++..+++.      +      ........++|+|+
T Consensus        26 L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            34677999999999555443479999999877765      0      11234467888886

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=88.40  E-value=0.91  Score=31.99  Aligned_cols=67  Identities=15%  Similarity=0.163  Sum_probs=45.2

Q ss_pred             CeeEEEECCCCCeEEEEe-CCCeEEEEEcCCCce---------------eccCCCcEEEEEecCCcceeeeeeecccEEE
Q 036317           14 DANEVKLSNDGRLMLLTT-LEGHIHVLHSFQGTL---------------PVSHNSTLEASFSQHLSLVALSVLILRSWVL   77 (106)
Q Consensus        14 ~v~~v~~spdg~~l~~~~-~~~~i~l~d~~~~~~---------------~~~~~~~~~~~fs~d~~~~~~~~~~~~~~i~   77 (106)
                      ....+.++|||+|+++++ .+.++-++|...-..               +.---.+....|+.+|           .--.
T Consensus       276 sPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPLht~fd~~g-----------~ayt  344 (459)
T d1fwxa2         276 NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRG-----------NAYT  344 (459)
T ss_dssp             SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEEEEEECTTS-----------EEEE
T ss_pred             CCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcCccccccCCCc-----------eEEE
Confidence            345789999999998776 678999999753211               1111134567888888           4444


Q ss_pred             EecCCCcEEEEECC
Q 036317           78 EGSGDGSVYAWSAR   91 (106)
Q Consensus        78 t~s~d~~i~~wd~~   91 (106)
                      |---|.+|.-|+++
T Consensus       345 slfids~v~kw~~~  358 (459)
T d1fwxa2         345 SLFLDSQVVKWNIE  358 (459)
T ss_dssp             EETTTTEEEEEEHH
T ss_pred             EeeccceEEEEecc
Confidence            44567788888874

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=86.51  E-value=1.9  Score=30.54  Aligned_cols=41  Identities=17%  Similarity=0.239  Sum_probs=30.4

Q ss_pred             ECCCCCeEEEEeCCCeEEEEEcCCCce----ec---cCCCcEEEEEecCC
Q 036317           20 LSNDGRLMLLTTLEGHIHVLHSFQGTL----PV---SHNSTLEASFSQHL   62 (106)
Q Consensus        20 ~spdg~~l~~~~~~~~i~l~d~~~~~~----~~---~~~~~~~~~fs~d~   62 (106)
                      ++..|..+.+++.|+.++-+|..+|+.    ..   ..+.+  ++|..||
T Consensus       493 lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P--~ty~~~G  540 (582)
T d1flga_         493 LATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPP--ITWEQDG  540 (582)
T ss_dssp             EEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC--EEEEETT
T ss_pred             eEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccC--EEEEECC
Confidence            345677788899999999999999998    11   12222  6788899

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=85.90  E-value=1.2  Score=31.51  Aligned_cols=23  Identities=30%  Similarity=0.554  Sum_probs=19.9

Q ss_pred             cEEEEecCCCcEEEEECCCCCCC
Q 036317           74 SWVLEGSGDGSVYAWSARSGKEP   96 (106)
Q Consensus        74 ~~i~t~s~d~~i~~wd~~~~~~v   96 (106)
                      ..|..|+.||.++.+|.++|+.+
T Consensus       470 glVF~G~~dg~l~A~Da~tGe~L  492 (560)
T d1kv9a2         470 NLVFQGTAAGQMHAYSADKGEAL  492 (560)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEE
T ss_pred             CEEEEECCCCcEEEEECCCCcEe
Confidence            56778899999999999999933

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=84.31  E-value=4.2  Score=27.19  Aligned_cols=58  Identities=12%  Similarity=0.146  Sum_probs=37.4

Q ss_pred             CCeEEEEEcCCCce---------------ec-cCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEEECCCCCCC
Q 036317           33 EGHIHVLHSFQGTL---------------PV-SHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSARSGKEP   96 (106)
Q Consensus        33 ~~~i~l~d~~~~~~---------------~~-~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd~~~~~~v   96 (106)
                      .+.+|+.++.+...               +. ....+.++..|+..           ..|.--..-|.++++|+++|..+
T Consensus       222 ~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~ky-----------giiyviTK~G~i~lyDleTgt~i  290 (327)
T d1utca2         222 GGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKH-----------DVVFLITKYGYIHLYDLETGTCI  290 (327)
T ss_dssp             EEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTT-----------TEEEEEETTSEEEEEETTTCCEE
T ss_pred             CcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccC-----------CEEEEEecCcEEEEEEcccccEE
Confidence            37889998765321               00 12334566667666           66666777899999999999844


Q ss_pred             cEEEe
Q 036317           97 PVIKW  101 (106)
Q Consensus        97 ~~i~~  101 (106)
                      -.-+.
T Consensus       291 ~~nRI  295 (327)
T d1utca2         291 YMNRI  295 (327)
T ss_dssp             EEEEC
T ss_pred             EEeec
Confidence            33333

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=83.24  E-value=1.9  Score=30.48  Aligned_cols=39  Identities=13%  Similarity=0.252  Sum_probs=29.0

Q ss_pred             CCCCeEEEEeCCCeEEEEEcCCCce--e--c---cCCCcEEEEEecCC
Q 036317           22 NDGRLMLLTTLEGHIHVLHSFQGTL--P--V---SHNSTLEASFSQHL   62 (106)
Q Consensus        22 pdg~~l~~~~~~~~i~l~d~~~~~~--~--~---~~~~~~~~~fs~d~   62 (106)
                      -.|..+.+++.|+.++.+|..+|+.  .  .   ..+.+  ++|..||
T Consensus       486 tagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P--~ty~~~G  531 (573)
T d1kb0a2         486 TAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAP--STYMVDG  531 (573)
T ss_dssp             ETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC--EEEEETT
T ss_pred             EcCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccC--EEEEECC
Confidence            3577788889999999999999998  1  1   12222  6778899

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=83.18  E-value=1.5  Score=30.28  Aligned_cols=33  Identities=15%  Similarity=0.167  Sum_probs=27.0

Q ss_pred             CCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEEECCCCC
Q 036317           51 NSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSARSGK   94 (106)
Q Consensus        51 ~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd~~~~~   94 (106)
                      ..+..++|.||+           +.+++--..|.|++++.++++
T Consensus        27 ~~P~~la~~pdg-----------~llVter~~G~i~~v~~~~g~   59 (450)
T d1crua_          27 NKPHALLWGPDN-----------QIWLTERATGKILRVNPESGS   59 (450)
T ss_dssp             SSEEEEEECTTS-----------CEEEEETTTCEEEEECTTTCC
T ss_pred             CCceEEEEeCCC-----------eEEEEEecCCEEEEEECCCCc
Confidence            456789999999           888877667899999887776

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=82.33  E-value=1.1  Score=31.75  Aligned_cols=52  Identities=17%  Similarity=0.284  Sum_probs=35.2

Q ss_pred             CeEEEEEcCCCce--ec-cCCCcEEEEEecCCcceeeeeeecccEEEEecCCCcEEEEECCCCCCC
Q 036317           34 GHIHVLHSFQGTL--PV-SHNSTLEASFSQHLSLVALSVLILRSWVLEGSGDGSVYAWSARSGKEP   96 (106)
Q Consensus        34 ~~i~l~d~~~~~~--~~-~~~~~~~~~fs~d~~~~~~~~~~~~~~i~t~s~d~~i~~wd~~~~~~v   96 (106)
                      +.+.-+|..+|+.  .. ...+...-..+-.+           ..|.+|+.|+.++.+|.++|+.+
T Consensus       457 G~l~AiD~~tGk~~W~~~~~~p~~gg~lstag-----------glVF~G~~dg~l~A~Da~TGe~L  511 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAG-----------NVVFQGTADGRLVAYHAATGEKL  511 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEETT-----------TEEEEECTTSEEEEEETTTCCEE
T ss_pred             ccEEEeCCCCCceEeeecCCCCCCCceEEEcC-----------CEEEEECCCCeEEEEECCCCcEe
Confidence            3577788888887  11 11111222334466           77888999999999999999943

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=82.19  E-value=0.85  Score=32.74  Aligned_cols=24  Identities=25%  Similarity=0.223  Sum_probs=20.4

Q ss_pred             cEEEEecCCCcEEEEECCCCCCCc
Q 036317           74 SWVLEGSGDGSVYAWSARSGKEPP   97 (106)
Q Consensus        74 ~~i~t~s~d~~i~~wd~~~~~~v~   97 (106)
                      ..|..|+.||.++.+|.++|+.+.
T Consensus       485 glVF~G~~Dg~l~A~Da~TGe~LW  508 (596)
T d1w6sa_         485 DLVFYGTLDGYLKARDSDTGDLLW  508 (596)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEE
T ss_pred             CEEEEECCCCeEEEEECCCCcEee
Confidence            667789999999999999999443

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=81.09  E-value=2.3  Score=30.37  Aligned_cols=39  Identities=21%  Similarity=0.330  Sum_probs=29.1

Q ss_pred             CCCCeEEEEeCCCeEEEEEcCCCce--ec-----cCCCcEEEEEecCC
Q 036317           22 NDGRLMLLTTLEGHIHVLHSFQGTL--PV-----SHNSTLEASFSQHL   62 (106)
Q Consensus        22 pdg~~l~~~~~~~~i~l~d~~~~~~--~~-----~~~~~~~~~fs~d~   62 (106)
                      ..|..+..++.|+.++-+|..+|++  ..     ..+.+  ++|..||
T Consensus       482 TagglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P--~tY~~dG  527 (596)
T d1w6sa_         482 TAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYP--MTYTHKG  527 (596)
T ss_dssp             ETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC--EEEEETT
T ss_pred             ecCCEEEEECCCCeEEEEECCCCcEeeEEECCCCcccCC--eEEEECC
Confidence            3567777899999999999999998  11     12222  6778899