Citrus Sinensis ID: 036337

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------
Protein Sequence
MATENLKKRTRDDRNDSDDTANVDKDNEVIKGGKRNNHQRKMVMAKRGLKSLSMAVALPLSLTLLNIYFNGSSDRYVKQEKPFWFPSLLVLHTASLASTFLMGLSSWLVWAEGGFHKKPTVLYLCLAQLGLSLAWDPIVFHLGAYWAGLVVSTALSGSLVWYCRVVEEVNPIAGDLMKPCVAWAALLSLVNLKLVFS
Secondary Structure (PSIPRED)
cccccHHccccccccccccccccccccccccccccccHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
ccccccEEEccccccccccccccccccccccccccccccHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccccHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
matenlkkrtrddrndsddtanvdkdnevikggkrnnhQRKMVMAKRGLKSLSMAVALPLSLTLLNIYfngssdryvkqekpfwfpsLLVLHTASLASTFLMGLSSWLVWaeggfhkkpTVLYLCLAQLglslawdpiVFHLGAYWAGLVVSTALSGSLVWYCRVVEEvnpiagdlmKPCVAWAALLSLVNLKLVFS
Flexible Loop (DISEMBL)
matenlkkrtrddrndsddtanvdkdnevikggkrnnhqrkMVMAKRGLKSLSMAVALPLSLTLLNIYFNGSSDRYVKQEKPFWFPSLLVLHTASLASTFLMGLSSWLVWAEGGFHKKPTVLYLCLAQLGLSLAWDPIVFHLGAYWAGLVVSTALSGSLVWYCRVVEEVNPIAGDLMKPCVAWAALLSLVNLKLVFS
Low Complexity Region (SEG)
MATENLKKrtrddrndsddtanvdKDNEVIKGGKRNNHQRKMVMAKRGLKSLSMAVALPLSLTLLNIYFNGSSDRYVKQEKPFWFPSLLVLHTASLASTFLMGLSSWLVWAEGGFHKKPTVLYLCLAQLGLSLAWDPIVFHLGAYWAGLVVSTALSGSLVWYCRVVEEVNPIAGDLMKPCVAWAALLSLVNLKLVFS
Disordered region (IsUnstruct)
************************************************LKSLSMAVALPLSLTLLNIYFNGSSDRYVKQEKPFWFPSLLVLHTASLASTFLMGLSSWLVWAEGGFHKKPTVLYLCLAQLGLSLAWDPIVFHLGAYWAGLVVSTALSGSLVWYCRVVEEVNPIAGDLMKPCVAWAALLSLVNLKLVF*
Disordered Region (DISOPRED)
*************************************************KSLSMAVALPLSLTLLNIYFNGSSDRYVKQEKPFWFPSLLVLHTASLASTFLMGLSSWLVWAEGGFHKKPTVLYLCLAQLGLSLAWDPIVFHLGAYWAGLVVSTALSGSLVWYCRVVEEVNPIAGDLMKPCVAWAALLSLVNLKLVFS
Disordered Region (DISEMBL)
*******************TANVDKDNEVIKGGKRNNHQRKMVMAKRGLKSLSMAVALPLSLTLLNIYFNGSSDRYVKQEKPFWFPSLLVLHTASLASTFLMGLSSWLVWAEGGFHKKPTVLYLCLAQLGLSLAWDPIVFHLGAYWAGLVVSTALSGSLVWYCRVVEEVNPIAGDLMKPCVAWAALLSLVNLKLVFS
Disordered Region (DISPRO)
**********************************************RGLKSLSMAVALPLSLTLLNIYFNGSSDRYVKQEKPFWFPSLLVLHTASLASTFLMGLSSWLVWAEGGFHKKPTVLYLCLAQLGLSLAWDPIVFHLGAYWAGLVVSTALSGSLVWYCRVVEEVNPIAGDLMKPCVAWAALLSLVNLKLVFS
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MATENLKKRTRDDRNDSDDTANVDKDNEVIKGGKRNNHQRKMVMAKRGLKSLSMAVALPLSLTLLNIYFNGSSDRYVKQEKPFWFPSLLVLHTASLASTFLMGLSSWLVWAEGGFHKKPTVLYLCLAQLGLSLAWDPIVFHLGAYWAGLVVSTALSGSLVWYCRVVEEVNPIAGDLMKPCVAWAALLSLVNLKLVFS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	197	2.2.26 [Sep-21-2011]
O82245	196	Translocator protein homo	yes	no	0.989	0.994	0.459	3e-42
P30536	169	Translocator protein OS=H	yes	no	0.715	0.834	0.329	5e-07
P16257	169	Translocator protein OS=R	yes	no	0.614	0.715	0.330	5e-05
Q9GMC9	169	Translocator protein OS=O	N/A	no	0.629	0.733	0.308	0.0001
P50637	169	Translocator protein OS=M	yes	no	0.614	0.715	0.338	0.0001
P30535	169	Translocator protein OS=B	yes	no	0.644	0.751	0.307	0.0008

>sp|O82245|TSPO_ARATH Translocator protein homolog OS=Arabidopsis thaliana GN=TSPO PE=1 SV=1

 Score =  171 bits (433), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 91/198 (45%), Positives = 128/198 (64%), Gaps = 3/198 (1%)

Query: 1   MATENLKKRTRDDRNDSDDTANVDKDNEVIKGGKRNNHQRKMVMAKRGLKSLSMAVALPL 60
           M +++++ R  DDR D+  TA  + + +     K    Q++  MAKRGLKSL++AVA P+
Sbjct: 1   MDSQDIRYRGGDDR-DAATTAMAETERKSADDNKGKRDQKR-AMAKRGLKSLTVAVAAPV 58

Query: 61  SLTLLNIYFNGSSDRYVKQEKPF-WFPSLLVLHTASLASTFLMGLSSWLVWAEGGFHKKP 119
            +TL   YF G+SD Y  + K   W P L +LHT  LAS+ LMGL++WLVW +GGFHKKP
Sbjct: 59  LVTLFATYFLGTSDGYGNRAKSSSWIPPLWLLHTTCLASSGLMGLAAWLVWVDGGFHKKP 118

Query: 120 TVLYLCLAQLGLSLAWDPIVFHLGAYWAGLVVSTALSGSLVWYCRVVEEVNPIAGDLMKP 179
             LYL LAQ  L L WDP+ F +G+  AGL V    S +L    +   E++P+AG+L+KP
Sbjct: 119 NALYLYLAQFLLCLVWDPVTFRVGSGVAGLAVWLGQSAALFGCYKAFNEISPVAGNLVKP 178

Query: 180 CVAWAALLSLVNLKLVFS 197
           C+AWAA ++ VN+KL  +
Sbjct: 179 CLAWAAFVAAVNVKLAVA 196

Stress-induced membrane protein that can bind heme and may play a role in the transport of tetrapyrrole intermediates during salt stress and contribute to the detoxification of highly reactive porphyrins in the cytoplasm.
Arabidopsis thaliana (taxid: 3702)

>sp|P30536|TSPOA_HUMAN Translocator protein OS=Homo sapiens GN=TSPO PE=1 SV=3

 Score = 54.3 bits (129), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 52/158 (32%), Positives = 74/158 (46%), Gaps = 17/158 (10%)

Query: 44  MAKRGLKSLSMAVALPLSLTLLNIYFNGSSDR-YVKQEKPFWFPSLLVLHTASLASTFLM 102
           MA   + ++   +A  L   + + + +G   R Y   +KP W P   VL          M
Sbjct: 1   MAPPWVPAMGFTLAPSLGCFVGSRFVHGEGLRWYAGLQKPSWHPPHWVLGPVWGTLYSAM 60

Query: 103 GLSSWLVWAE-GGFHKKPTV-LYLCLAQLGLSLAWDPIVFHLGAYWAG-------LVVST 153
           G  S+LVW E GGF +K  V L L   QL L+ AW PI F  GA   G       LV   
Sbjct: 61  GYGSYLVWKELGGFTEKAVVPLGLYTGQLALNWAWPPIFF--GARQMGWALVDLLLVSGA 118

Query: 154 ALSGSLVWYCRVVEEVNPIAGDLMKPCVAWAALLSLVN 191
           A + ++ WY     +V+P+A  L+ P +AW A  + +N
Sbjct: 119 AAATTVAWY-----QVSPLAARLLYPYLAWLAFTTTLN 151

Responsible for the manifestation of peripheral-type benzodiazepine recognition sites and is most likely to comprise binding domains for benzodiazepines and isoquinoline carboxamides. May play a role in the transport of porphyrins and heme. Plays a role in the transport of cholesterol across mitochondrial membranes in steroidogenic cells.

Homo sapiens (taxid: 9606)

>sp|P16257|TSPO_RAT Translocator protein OS=Rattus norvegicus GN=Tspo PE=1 SV=1

 Score = 47.8 bits (112), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 46/139 (33%), Positives = 64/139 (46%), Gaps = 18/139 (12%)

Query: 64  LLNIYF-NGSSDR-YVKQEKPFWFPSLLVLHTASLASTFLMGLSSWLVWAE-GGFHKKPT 120
            +  YF  G   R Y   +KP W P    L          MG  S+++W E GGF ++  
Sbjct: 20  FMGAYFVRGEGLRWYASLQKPSWHPPRWTLAPIWGTLYSAMGYGSYIIWKELGGFTEEAM 79

Query: 121 V-LYLCLAQLGLSLAWDPIVF---HLGAYWA----GLVVSTALSGSLVWYCRVVEEVNPI 172
           V L L   QL L+ AW PI F    +G  WA     LV   A + +L W+      V+P 
Sbjct: 80  VPLGLYTGQLALNWAWPPIFFGARQMG--WALVDLMLVSGVATATTLAWH-----RVSPP 132

Query: 173 AGDLMKPCVAWAALLSLVN 191
           A  L+ P +AW A  +++N
Sbjct: 133 AARLLYPYLAWLAFATMLN 151

Responsible for the manifestation of peripheral-type benzodiazepine recognition sites and is most likely to comprise binding domains for benzodiazepines and isoquinoline carboxamides. May play a role in the transport of porphyrins and heme. Plays a role in the transport of cholesterol across mitochondrial membranes in steroidogenic cells.

Rattus norvegicus (taxid: 10116)

>sp|Q9GMC9|TSPO_SHEEP Translocator protein OS=Ovis aries GN=TSPO PE=1 SV=1

 Score = 46.6 bits (109), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 65/133 (48%), Gaps = 9/133 (6%)

Query: 68  YFNGSSDR-YVKQEKPFWFPSLLVLHTASLASTFLMGLSSWLVWAE-GGFHKKPTV-LYL 124
           Y  G   R Y   +KP W P   +L          MG  S+L+W E GGF K+  V L L
Sbjct: 25  YIRGEGFRWYASLQKPPWHPPRWILAPIWGTLYSAMGYGSYLIWKELGGFSKEAVVPLGL 84

Query: 125 CLAQLGLSLAWDPIVF---HLGAYWAGLVVSTALSGSLVWYCRVVEEVNPIAGDLMKPCV 181
              QL L+ AW P+ F    +G  +  L+++  ++ +     R   +V+P A  L+ P +
Sbjct: 85  YAGQLALNWAWPPLFFGARQMGWAFVDLLLTGGMAAATAMAWR---QVSPPAACLLYPYL 141

Query: 182 AWAALLSLVNLKL 194
           AW A  +++N ++
Sbjct: 142 AWLAFAAMLNYRM 154

Responsible for the manifestation of peripheral-type benzodiazepine recognition sites and is most likely to comprise binding domains for benzodiazepines and isoquinoline carboxamides (By similarity). May play a role in the transport of porphyrins and heme (By similarity). Plays a role in the transport of cholesterol across mitochondrial membranes in steroidogenic cells.

Ovis aries (taxid: 9940)

>sp|P50637|TSPO_MOUSE Translocator protein OS=Mus musculus GN=Tspo PE=2 SV=1

 Score = 46.2 bits (108), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/139 (33%), Positives = 62/139 (44%), Gaps = 18/139 (12%)

Query: 64  LLNIYF-NGSSDR-YVKQEKPFWFPSLLVLHTASLASTFLMGLSSWLVWAE-GGFHKKPT 120
            +  YF  G   R Y   +KP W P    L          MG  S++VW E GGF +   
Sbjct: 20  FMGAYFVRGEGLRWYASLQKPSWHPPRWTLAPIWGTLYSAMGYGSYIVWKELGGFTEDAM 79

Query: 121 V-LYLCLAQLGLSLAWDPIVFHLGAYWAG-------LVVSTALSGSLVWYCRVVEEVNPI 172
           V L L   QL L+ AW PI F  GA   G       LV   A + +L W+      V+P 
Sbjct: 80  VPLGLYTGQLALNWAWPPIFF--GARQMGWALADLLLVSGVATATTLAWH-----RVSPP 132

Query: 173 AGDLMKPCVAWAALLSLVN 191
           A  L+ P +AW A  +++N
Sbjct: 133 AARLLYPYLAWLAFATVLN 151

Responsible for the manifestation of peripheral-type benzodiazepine recognition sites and is most likely to comprise binding domains for benzodiazepines and isoquinoline carboxamides. May play a role in the transport of porphyrins and heme (By similarity). Plays a role in the transport of cholesterol across mitochondrial membranes in steroidogenic cells.

Mus musculus (taxid: 10090)

>sp|P30535|TSPO_BOVIN Translocator protein OS=Bos taurus GN=TSPO PE=2 SV=1

 Score = 43.5 bits (101), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 56/130 (43%), Gaps = 3/130 (2%)

Query: 68  YFNGSSDR-YVKQEKPFWFPSLLVLHTASLASTFLMGLSSWLVWAE-GGFHKKPTV-LYL 124
           Y  G   R Y   +KP W P   +L          MG  S+++W E GGF K+  V L L
Sbjct: 25  YTRGEGFRWYASLQKPPWHPPRWILAPIWGTLYSAMGYGSYMIWKELGGFSKEAVVPLGL 84

Query: 125 CLAQLGLSLAWDPIVFHLGAYWAGLVVSTALSGSLVWYCRVVEEVNPIAGDLMKPCVAWA 184
              QL L+ AW P+ F        LV      G          +V+P A  L+ P +AW 
Sbjct: 85  YAGQLALNWAWPPLFFGTRQMGWALVDLLLTGGMAAATAMAWHQVSPPAACLLYPYLAWL 144

Query: 185 ALLSLVNLKL 194
           A   ++N ++
Sbjct: 145 AFAGMLNYRM 154

Responsible for the manifestation of peripheral-type benzodiazepine recognition sites and is most likely to comprise binding domains for benzodiazepines and isoquinoline carboxamides. May play a role in the transport of porphyrins and heme (By similarity). Plays a role in the transport of cholesterol across mitochondrial membranes in steroidogenic cells.

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	197
255582174	190	peripheral-type benzodiazepine receptor,	0.954	0.989	0.558	4e-53
225437310	185	PREDICTED: uncharacterized protein LOC10	0.939	1.0	0.548	7e-53
224064430	197	predicted protein [Populus trichocarpa]	0.969	0.969	0.522	1e-52
224131166	199	predicted protein [Populus trichocarpa]	0.969	0.959	0.527	4e-51
383932366	189	putative peripheral-type benzodiazepine	0.954	0.994	0.551	2e-47
50978430	192	peripheral-type benzodiazepine receptor	0.923	0.947	0.526	6e-41
18407444	196	tryptophan-rich sensory protein-like pro	0.989	0.994	0.459	1e-40
297824879	196	hypothetical protein ARALYDRAFT_483960 [	0.984	0.989	0.452	3e-40
356505564	185	PREDICTED: uncharacterized protein LOC10	0.928	0.989	0.441	1e-35
312282289	195	unnamed protein product [Thellungiella h	0.979	0.989	0.417	5e-35

>gi|255582174|ref|XP_002531881.1| peripheral-type benzodiazepine receptor, putative [Ricinus communis] gi|223528489|gb|EEF30518.1| peripheral-type benzodiazepine receptor, putative [Ricinus communis]

 Score =  213 bits (541), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 110/197 (55%), Positives = 139/197 (70%), Gaps = 9/197 (4%)

Query: 1   MATENLKKRTRDDRNDSDDTANVDKDNEVIKGGKRNNHQRKMVMAKRGLKSLSMAVALPL 60
           M ++++K RT+D      D ++  K+ ++    +R+   ++M MAKRG++SL++AVA PL
Sbjct: 1   MDSQSIKHRTKDP-----DQSDTPKETDMRSYSRRD---KRMAMAKRGIRSLAIAVAFPL 52

Query: 61  SLTLLNIYFNGSSDRYVK-QEKPFWFPSLLVLHTASLASTFLMGLSSWLVWAEGGFHKKP 119
           SLTL NIYF GS + Y     KPFWFP +  LH   LAS+FLMGLS+WLVWAEGGFHKKP
Sbjct: 53  SLTLFNIYFFGSRNGYGPLSTKPFWFPPMWALHFTCLASSFLMGLSAWLVWAEGGFHKKP 112

Query: 120 TVLYLCLAQLGLSLAWDPIVFHLGAYWAGLVVSTALSGSLVWYCRVVEEVNPIAGDLMKP 179
             L   LAQLGL L WDPIVF + A W GLVV  A+ GSLV   R  +EVNPIAGDL+KP
Sbjct: 113 AALSFYLAQLGLGLIWDPIVFRMDATWVGLVVCLAMFGSLVGCSRQFKEVNPIAGDLVKP 172

Query: 180 CVAWAALLSLVNLKLVF 196
            + WAA L++VNLKLVF
Sbjct: 173 SLTWAAFLAIVNLKLVF 189

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225437310|ref|XP_002263702.1| PREDICTED: uncharacterized protein LOC100267613 [Vitis vinifera]

 Score =  212 bits (539), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 108/197 (54%), Positives = 135/197 (68%), Gaps = 12/197 (6%)

Query: 1   MATENLKKRTRDDRNDSDDTANVDKDNEVIKGGKRNNHQRKMVMAKRGLKSLSMAVALPL 60
           MA+ NLK+R +D  +    T N  K             ++KM MAKRGL+SL+ AV++PL
Sbjct: 1   MASTNLKQRIKDGPSTPFPTNNTTK------------REKKMAMAKRGLRSLTTAVSIPL 48

Query: 61  SLTLLNIYFNGSSDRYVKQEKPFWFPSLLVLHTASLASTFLMGLSSWLVWAEGGFHKKPT 120
           SLTL+ IYF+G++DRY    KPFWFP L  +H  S+AS+ LMGLS+WLVWAEGGFHKKPT
Sbjct: 49  SLTLVTIYFSGATDRYRTLPKPFWFPPLWAVHATSMASSLLMGLSAWLVWAEGGFHKKPT 108

Query: 121 VLYLCLAQLGLSLAWDPIVFHLGAYWAGLVVSTALSGSLVWYCRVVEEVNPIAGDLMKPC 180
            L L +AQL LSL  DPIVF  G    GLVV   L G+LV   R+  EVNPIAGDL+KPC
Sbjct: 109 ALPLFVAQLALSLIRDPIVFGYGGTRVGLVVCMGLFGALVGCARMFREVNPIAGDLVKPC 168

Query: 181 VAWAALLSLVNLKLVFS 197
           +AW A + +V LKL+F+
Sbjct: 169 LAWTAYVGVVTLKLLFA 185

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224064430|ref|XP_002301472.1| predicted protein [Populus trichocarpa] gi|224100985|ref|XP_002334319.1| predicted protein [Populus trichocarpa] gi|222843198|gb|EEE80745.1| predicted protein [Populus trichocarpa] gi|222870389|gb|EEF07520.1| predicted protein [Populus trichocarpa]

 Score =  211 bits (537), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 105/201 (52%), Positives = 138/201 (68%), Gaps = 10/201 (4%)

Query: 1   MATENLKKRTRDDRNDSDDTANVDKDNEVIKGGKRNNHQRKMVMAKRGLKSLSMAVALPL 60
           M ++N+K+RTRD  ++ +     +    V     R   ++++ MA+RG++SL++AVALPL
Sbjct: 1   MDSQNVKQRTRDTVDEPNTIVGKNNSKNV-----RFRREKRVAMAQRGIRSLAIAVALPL 55

Query: 61  SLTLLNIYFNGSSDRYVKQE-----KPFWFPSLLVLHTASLASTFLMGLSSWLVWAEGGF 115
           SL L N+YF GS+  Y         KPFWFP L  LH   + S+FLMGLS+WLVWAEGGF
Sbjct: 56  SLALCNVYFFGSTKGYGTSSSRSISKPFWFPPLWALHMTCVTSSFLMGLSAWLVWAEGGF 115

Query: 116 HKKPTVLYLCLAQLGLSLAWDPIVFHLGAYWAGLVVSTALSGSLVWYCRVVEEVNPIAGD 175
           H+ PT LYL L QLGLSLAWDPIVF + A W GL+V  A  G+LV   R  +EVNPIAG+
Sbjct: 116 HRNPTALYLYLTQLGLSLAWDPIVFRMSAPWVGLLVCLATFGALVGCSRQFKEVNPIAGN 175

Query: 176 LMKPCVAWAALLSLVNLKLVF 196
           L+ PC+AWA+ L+ VNLKL+F
Sbjct: 176 LVMPCLAWASFLAFVNLKLLF 196

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224131166|ref|XP_002321017.1| predicted protein [Populus trichocarpa] gi|222861790|gb|EEE99332.1| predicted protein [Populus trichocarpa]

 Score =  206 bits (524), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 107/203 (52%), Positives = 138/203 (67%), Gaps = 12/203 (5%)

Query: 1   MATENLKKRTRD---DRNDSDDTANVDKDNEVIKGGKRNNHQRKMVMAKRGLKSLSMAVA 57
           M ++N K+R RD   D N S+ T + D    V     R   ++++ MAKRG++SL++AVA
Sbjct: 1   MDSQNAKQRIRDTDYDPNISNPTKSKDNSKTV-----RLKREKRVAMAKRGIRSLAIAVA 55

Query: 58  LPLSLTLLNIYFNGSSDRYVKQ----EKPFWFPSLLVLHTASLASTFLMGLSSWLVWAEG 113
           LPLSLT+ N+YF G++  Y         PFWFP    LH   + S+FLMGLS+WLVWAEG
Sbjct: 56  LPLSLTISNLYFFGTTRGYGTSTGSISMPFWFPPPWALHLTCMTSSFLMGLSAWLVWAEG 115

Query: 114 GFHKKPTVLYLCLAQLGLSLAWDPIVFHLGAYWAGLVVSTALSGSLVWYCRVVEEVNPIA 173
           GFH+ P  LYL LAQLGLSLAW+PIVF + A W GL+V  A    LV   R  +EVNPIA
Sbjct: 116 GFHRNPAALYLYLAQLGLSLAWEPIVFRMAAPWVGLLVCLATFAVLVGCSRQFKEVNPIA 175

Query: 174 GDLMKPCVAWAALLSLVNLKLVF 196
           GDL+KPC+AWA+ L++VNLKL+F
Sbjct: 176 GDLVKPCLAWASFLAIVNLKLLF 198

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|383932366|gb|AFH57280.1| putative peripheral-type benzodiazepine receptor [Gossypium hirsutum]

 Score =  194 bits (492), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 108/196 (55%), Positives = 136/196 (69%), Gaps = 8/196 (4%)

Query: 1   MATENLKKRTRDDRNDSDDTANVDKDNEVIKGGKRNNHQRKMVMAKRGLKSLSMAVALPL 60
           M ++NLK R+RDD   +  T+N +K+       + N  +++M MAKRGL+SL +AV+ PL
Sbjct: 1   MESQNLKHRSRDDPRFTTTTSN-EKN-------RANRREKRMAMAKRGLRSLVIAVSFPL 52

Query: 61  SLTLLNIYFNGSSDRYVKQEKPFWFPSLLVLHTASLASTFLMGLSSWLVWAEGGFHKKPT 120
           SLTLLNIY  GS   Y    KPFWFP L +LHT  LAS+FLMGLS+W VW EGGFH KPT
Sbjct: 53  SLTLLNIYLFGSGRGYASLAKPFWFPPLWLLHTGCLASSFLMGLSAWFVWVEGGFHVKPT 112

Query: 121 VLYLCLAQLGLSLAWDPIVFHLGAYWAGLVVSTALSGSLVWYCRVVEEVNPIAGDLMKPC 180
            L L L  LGLS+AW P V  +GA  AGL+V+ A+ G+LV   R   +VNPIAG+ + PC
Sbjct: 113 ALSLYLGYLGLSMAWHPTVLWMGASRAGLLVNLAMVGTLVGCSRDFRKVNPIAGNSVMPC 172

Query: 181 VAWAALLSLVNLKLVF 196
           +AWAA L+ VNLKLVF
Sbjct: 173 LAWAAFLATVNLKLVF 188

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|50978430|emb|CAH10765.1| peripheral-type benzodiazepine receptor [Solanum tuberosum]

 Score =  172 bits (436), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 99/188 (52%), Positives = 122/188 (64%), Gaps = 6/188 (3%)

Query: 4   ENLKKR--TRDDRNDSDDTANVDK---DNEVIKGGKRNNHQRKMVMAKRGLKSLSMAVAL 58
           + LK R  T+  +N+   T    K   DN+       N   RK + AKRGLKSL++A+ +
Sbjct: 6   DELKHRITTKSQQNEPQQTEQHTKSAHDNDSKTNKNINKSTRKQI-AKRGLKSLTIALTI 64

Query: 59  PLSLTLLNIYFNGSSDRYVKQEKPFWFPSLLVLHTASLASTFLMGLSSWLVWAEGGFHKK 118
           PL LTL++I   GSS +YV  EKPFWFP L  LH A L S+ LMGLS+WLVWAEGGFH+K
Sbjct: 65  PLLLTLIDISLFGSSYQYVSMEKPFWFPRLWALHLACLGSSLLMGLSAWLVWAEGGFHRK 124

Query: 119 PTVLYLCLAQLGLSLAWDPIVFHLGAYWAGLVVSTALSGSLVWYCRVVEEVNPIAGDLMK 178
           P  + L L+QLGLSLAWDP+VF  GA   GLV+  AL G L+   R  + VNPIAGDL+K
Sbjct: 125 PMAMLLYLSQLGLSLAWDPVVFKSGATRIGLVLCMALFGVLIACFRAFKNVNPIAGDLVK 184

Query: 179 PCVAWAAL 186
           PC  WA  
Sbjct: 185 PCFGWAGF 192

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18407444|ref|NP_566110.1| tryptophan-rich sensory protein-like protein [Arabidopsis thaliana] gi|75100575|sp|O82245.1|TSPO_ARATH RecName: Full=Translocator protein homolog; Short=AtTSPO gi|16226870|gb|AAL16286.1|AF428356_1 At2g47770/F17A22.16 [Arabidopsis thaliana] gi|3738290|gb|AAC63632.1| expressed protein [Arabidopsis thaliana] gi|15028357|gb|AAK76655.1| unknown protein [Arabidopsis thaliana] gi|19310783|gb|AAL85122.1| unknown protein [Arabidopsis thaliana] gi|330255792|gb|AEC10886.1| tryptophan-rich sensory protein-like protein [Arabidopsis thaliana]

 Score =  171 bits (433), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 91/198 (45%), Positives = 128/198 (64%), Gaps = 3/198 (1%)

Query: 1   MATENLKKRTRDDRNDSDDTANVDKDNEVIKGGKRNNHQRKMVMAKRGLKSLSMAVALPL 60
           M +++++ R  DDR D+  TA  + + +     K    Q++  MAKRGLKSL++AVA P+
Sbjct: 1   MDSQDIRYRGGDDR-DAATTAMAETERKSADDNKGKRDQKR-AMAKRGLKSLTVAVAAPV 58

Query: 61  SLTLLNIYFNGSSDRYVKQEKPF-WFPSLLVLHTASLASTFLMGLSSWLVWAEGGFHKKP 119
            +TL   YF G+SD Y  + K   W P L +LHT  LAS+ LMGL++WLVW +GGFHKKP
Sbjct: 59  LVTLFATYFLGTSDGYGNRAKSSSWIPPLWLLHTTCLASSGLMGLAAWLVWVDGGFHKKP 118

Query: 120 TVLYLCLAQLGLSLAWDPIVFHLGAYWAGLVVSTALSGSLVWYCRVVEEVNPIAGDLMKP 179
             LYL LAQ  L L WDP+ F +G+  AGL V    S +L    +   E++P+AG+L+KP
Sbjct: 119 NALYLYLAQFLLCLVWDPVTFRVGSGVAGLAVWLGQSAALFGCYKAFNEISPVAGNLVKP 178

Query: 180 CVAWAALLSLVNLKLVFS 197
           C+AWAA ++ VN+KL  +
Sbjct: 179 CLAWAAFVAAVNVKLAVA 196

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297824879|ref|XP_002880322.1| hypothetical protein ARALYDRAFT_483960 [Arabidopsis lyrata subsp. lyrata] gi|297326161|gb|EFH56581.1| hypothetical protein ARALYDRAFT_483960 [Arabidopsis lyrata subsp. lyrata]

 Score =  170 bits (431), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 90/199 (45%), Positives = 128/199 (64%), Gaps = 5/199 (2%)

Query: 1   MATENLKKRTRDDRNDSDDT-ANVDKDNEVIKGGKRNNHQRKMVMAKRGLKSLSMAVALP 59
           M +++++ R  DDR+ +    A  ++ N     GKR+   +K  MAKRGLKSL++AVA P
Sbjct: 1   MDSQDIRYRGGDDRDAATTAMAETERKNADDNKGKRD---QKRAMAKRGLKSLTIAVAAP 57

Query: 60  LSLTLLNIYFNGSSDRYVKQEKPF-WFPSLLVLHTASLASTFLMGLSSWLVWAEGGFHKK 118
           + +TL   YF G+SD Y  + +   W P L +LHT  LAS+ LMGL++WLVW +GGFHKK
Sbjct: 58  VLVTLFATYFLGTSDGYGNRARSSSWIPPLWLLHTTCLASSGLMGLAAWLVWVDGGFHKK 117

Query: 119 PTVLYLCLAQLGLSLAWDPIVFHLGAYWAGLVVSTALSGSLVWYCRVVEEVNPIAGDLMK 178
           P  LYL LAQ  L L WDP+ F  G+  AGL +    S +L    +   E++P+AG+L+K
Sbjct: 118 PNALYLYLAQFMLCLVWDPVTFRAGSGIAGLALWLGQSAALFGCYKAFSEISPVAGNLVK 177

Query: 179 PCVAWAALLSLVNLKLVFS 197
           PC+AWAA ++ VN+KL  +
Sbjct: 178 PCLAWAAFVAAVNVKLAVA 196

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356505564|ref|XP_003521560.1| PREDICTED: uncharacterized protein LOC100785785 [Glycine max]

 Score =  154 bits (390), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 87/197 (44%), Positives = 117/197 (59%), Gaps = 14/197 (7%)

Query: 1   MATENLKKRTRDDRNDSDDTANVDKDNEVIKGGKRNNHQRKMVMAKRGLKSLSMAVALPL 60
           M + +LK R       ++D               R +  ++M+MAKRGLKSL++AV LPL
Sbjct: 1   MPSNDLKHRVTTTTATTNDV-------------NRTSRGKRMLMAKRGLKSLAIAVVLPL 47

Query: 61  SLTLLNIYFNGSSDRYVKQEK-PFWFPSLLVLHTASLASTFLMGLSSWLVWAEGGFHKKP 119
           SLT L+ Y   SS       + PFWFP    LH    AS+FLMGLS+W+VWA+GGFH+ P
Sbjct: 48  SLTALSAYIGSSSSSAHYASRSPFWFPPSWALHLTCPASSFLMGLSAWMVWADGGFHRNP 107

Query: 120 TVLYLCLAQLGLSLAWDPIVFHLGAYWAGLVVSTALSGSLVWYCRVVEEVNPIAGDLMKP 179
             L L   QL  ++ WDP+VF LGA   GL++  +L  +     R+    NPIA DL+KP
Sbjct: 108 MALLLYFTQLLFTVLWDPLVFALGATRLGLILCVSLFLTQFGCMRLFRPFNPIAADLIKP 167

Query: 180 CVAWAALLSLVNLKLVF 196
           C+AW A LS++NLKL+F
Sbjct: 168 CLAWVAFLSILNLKLLF 184

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312282289|dbj|BAJ34010.1| unnamed protein product [Thellungiella halophila]

 Score =  152 bits (385), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 83/199 (41%), Positives = 120/199 (60%), Gaps = 6/199 (3%)

Query: 1   MATENLKKRTRDDRNDSDDTANVDKDNEVIKGGKRNNHQRKMVMAKRGLKSLSMAVALPL 60
           M +++++ R  DDR    D A  + + +      +    +K  MAKRGLKSL++AVA P+
Sbjct: 1   MDSQDIRHRGGDDR----DAAMAETERKNADDKSKGKRDQKRAMAKRGLKSLAVAVAAPV 56

Query: 61  SLTLLNIYFNGSSDRYV--KQEKPFWFPSLLVLHTASLASTFLMGLSSWLVWAEGGFHKK 118
            +TL   YF G+S      + +   W P L VLH   LAS+ LMGL++WLVW +GGFHKK
Sbjct: 57  LMTLFATYFLGTSGGGYGSRAQSTSWIPPLWVLHAIRLASSGLMGLAAWLVWVDGGFHKK 116

Query: 119 PTVLYLCLAQLGLSLAWDPIVFHLGAYWAGLVVSTALSGSLVWYCRVVEEVNPIAGDLMK 178
           P  LYL LAQ  L LAW P++  +G+  AGL V    S +L    +   E++P+AG+L+K
Sbjct: 117 PNALYLYLAQFMLCLAWGPVIVRVGSGVAGLAVWLGQSAALFGCYKAFNEISPVAGNLVK 176

Query: 179 PCVAWAALLSLVNLKLVFS 197
            C+A AA ++ VN+KL  +
Sbjct: 177 LCLACAAFVAAVNVKLAIA 195

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	197
TAIR|locus:2043358	196	TSPO "TSPO(outer membrane tryp	0.807	0.811	0.521	1.8e-39
UNIPROTKB|P30536	169	TSPO "Translocator protein" [H	0.725	0.846	0.339	1.7e-11
UNIPROTKB|P30535	169	TSPO "Translocator protein" [B	0.624	0.727	0.328	1.5e-10
UNIPROTKB|E2RQH5	169	TSPO "Uncharacterized protein"	0.741	0.863	0.313	5.2e-10
UNIPROTKB|F1SJR8	169	TSPO "Translocator protein" [S	0.568	0.662	0.352	5.2e-10
UNIPROTKB|F1NZA2	167	TSPO "Uncharacterized protein"	0.558	0.658	0.361	6.6e-10
RGD|2228	169	Tspo "translocator protein" [R	0.659	0.769	0.344	6.6e-10
UNIPROTKB|Q6UN27	169	TSPO "Translocator protein" [S	0.568	0.662	0.344	1.1e-09
MGI|MGI:88222	169	Tspo "translocator protein" [M	0.659	0.769	0.350	1.4e-09
UNIPROTKB|E2RDM9	172	TSPO2 "Uncharacterized protein	0.685	0.784	0.3	2.9e-09

TAIR|locus:2043358 TSPO "TSPO(outer membrane tryptophan-rich sensory protein)-related" [Arabidopsis thaliana (taxid:3702)]

 Score = 421 (153.3 bits), Expect = 1.8e-39, P = 1.8e-39
 Identities = 85/163 (52%), Positives = 112/163 (68%)

Query:    33 GKRNNHQRKMVMAKRGLKSLSMAVALPLSLTLLNIYFNGSSDRYVKQEKPF-WFPSLLVL 91
             GKR+   +K  MAKRGLKSL++AVA P+ +TL   YF G+SD Y  + K   W P L +L
Sbjct:    34 GKRD---QKRAMAKRGLKSLTVAVAAPVLVTLFATYFLGTSDGYGNRAKSSSWIPPLWLL 90

Query:    92 HTASLASTFLMGLSSWLVWAEGGFHKKPTVLYLCLAQLGLSLAWDPIVFHLGAYWAGLVV 151
             HT  LAS+ LMGL++WLVW +GGFHKKP  LYL LAQ  L L WDP+ F +G+  AGL V
Sbjct:    91 HTTCLASSGLMGLAAWLVWVDGGFHKKPNALYLYLAQFLLCLVWDPVTFRVGSGVAGLAV 150

Query:   152 STALSGSLVWYCRVVEEVNPIAGDLMKPCVAWAALLSLVNLKL 194
                 S +L    +   E++P+AG+L+KPC+AWAA ++ VN+KL
Sbjct:   151 WLGQSAALFGCYKAFNEISPVAGNLVKPCLAWAAFVAAVNVKL 193

GO:0005739 "mitochondrion" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005795 "Golgi stack" evidence=IDA

GO:0006970 "response to osmotic stress" evidence=IEP

GO:0009651 "response to salt stress" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0016020 "membrane" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006778 "porphyrin-containing compound metabolic process" evidence=IMP

GO:0020037 "heme binding" evidence=IDA

UNIPROTKB|P30536 TSPO "Translocator protein" [Homo sapiens (taxid:9606)]

 Score = 157 (60.3 bits), Expect = 1.7e-11, P = 1.7e-11
 Identities = 53/156 (33%), Positives = 75/156 (48%)

Query:    44 MAKRGLKSLSMAVALPLSLTLLNIYFNGSSDR-YVKQEKPFWFPSLLVLHTASLASTFLM 102
             MA   + ++   +A  L   + + + +G   R Y   +KP W P   VL          M
Sbjct:     1 MAPPWVPAMGFTLAPSLGCFVGSRFVHGEGLRWYAGLQKPSWHPPHWVLGPVWGTLYSAM 60

Query:   103 GLSSWLVWAE-GGFHKKPTV-LYLCLAQLGLSLAWDPIVFHLGAY-WAG---LVVSTALS 156
             G  S+LVW E GGF +K  V L L   QL L+ AW PI F      WA    L+VS A +
Sbjct:    61 GYGSYLVWKELGGFTEKAVVPLGLYTGQLALNWAWPPIFFGARQMGWALVDLLLVSGAAA 120

Query:   157 GSLV-WYCRVVEEVNPIAGDLMKPCVAWAALLSLVN 191
              + V WY     +V+P+A  L+ P +AW A  + +N
Sbjct:   121 ATTVAWY-----QVSPLAARLLYPYLAWLAFTTTLN 151

GO:0016021 "integral to membrane" evidence=IEA

GO:0005497 "androgen binding" evidence=IEA

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0006694 "steroid biosynthetic process" evidence=IEA

GO:0007568 "aging" evidence=IEA

GO:0008347 "glial cell migration" evidence=IEA

GO:0008503 "benzodiazepine receptor activity" evidence=IEA

GO:0010042 "response to manganese ion" evidence=IEA

GO:0010266 "response to vitamin B1" evidence=IEA

GO:0010940 "positive regulation of necrotic cell death" evidence=IEA

GO:0014012 "peripheral nervous system axon regeneration" evidence=IEA

GO:0030325 "adrenal gland development" evidence=IEA

GO:0032570 "response to progesterone stimulus" evidence=IEA

GO:0032720 "negative regulation of tumor necrosis factor production" evidence=IEA

GO:0033574 "response to testosterone stimulus" evidence=IEA

GO:0042493 "response to drug" evidence=IEA

GO:0043065 "positive regulation of apoptotic process" evidence=IEA

GO:0045019 "negative regulation of nitric oxide biosynthetic process" evidence=IEA

GO:0048266 "behavioral response to pain" evidence=IEA

GO:0050810 "regulation of steroid biosynthetic process" evidence=IEA

GO:0051901 "positive regulation of mitochondrial depolarization" evidence=IEA

GO:0051928 "positive regulation of calcium ion transport" evidence=IEA

GO:0060242 "contact inhibition" evidence=IEA

GO:0060252 "positive regulation of glial cell proliferation" evidence=IEA

GO:0060253 "negative regulation of glial cell proliferation" evidence=IEA

GO:0071222 "cellular response to lipopolysaccharide" evidence=IEA

GO:0071294 "cellular response to zinc ion" evidence=IEA

GO:0071476 "cellular hypotonic response" evidence=IEA

GO:2000379 "positive regulation of reactive oxygen species metabolic process" evidence=IEA

GO:0006626 "protein targeting to mitochondrion" evidence=TAS

GO:0006783 "heme biosynthetic process" evidence=TAS

GO:0006820 "anion transport" evidence=TAS

GO:0008202 "steroid metabolic process" evidence=TAS

GO:0008283 "cell proliferation" evidence=TAS

GO:0015485 "cholesterol binding" evidence=TAS

GO:0006915 "apoptotic process" evidence=TAS

GO:0032374 "regulation of cholesterol transport" evidence=TAS

UNIPROTKB|P30535 TSPO "Translocator protein" [Bos taurus (taxid:9913)]

 Score = 148 (57.2 bits), Expect = 1.5e-10, P = 1.5e-10
 Identities = 44/134 (32%), Positives = 65/134 (48%)

Query:    68 YFNGSSDR-YVKQEKPFWFPSLLVLHTASLASTFL--MGLSSWLVWAE-GGFHKKPTV-L 122
             Y  G   R Y   +KP W P   +L  A +  T    MG  S+++W E GGF K+  V L
Sbjct:    25 YTRGEGFRWYASLQKPPWHPPRWIL--APIWGTLYSAMGYGSYMIWKELGGFSKEAVVPL 82

Query:   123 YLCLAQLGLSLAWDPIVFHLGAY-WAGLVVSTALSGSLVWYCRVV-EEVNPIAGDLMKPC 180
              L   QL L+ AW P+ F      WA  +V   L+G +     +   +V+P A  L+ P 
Sbjct:    83 GLYAGQLALNWAWPPLFFGTRQMGWA--LVDLLLTGGMAAATAMAWHQVSPPAACLLYPY 140

Query:   181 VAWAALLSLVNLKL 194
             +AW A   ++N ++
Sbjct:   141 LAWLAFAGMLNYRM 154

GO:0031966 "mitochondrial membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|E2RQH5 TSPO "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 143 (55.4 bits), Expect = 5.2e-10, P = 5.2e-10
 Identities = 48/153 (31%), Positives = 67/153 (43%)

Query:    44 MAKRGLKSLSMAVALPLSLTLLNIYFNGSSDR-YVKQEKPFWFPSLLVLHTASLASTFLM 102
             MA   + ++   +   L   L + Y  G   R Y   +KP W P    L          M
Sbjct:     1 MAPPWVPAVGFTLVPSLGGFLGSYYVRGEGLRWYASLQKPSWHPPRWTLGPIWGTLYSAM 60

Query:   103 GLSSWLVWAE-GGFHKKPTV-LYLCLAQLGLSLAWDPIVFHLGAY-WAGLVVSTALSGSL 159
             G  S++VW E GGF ++  V L L   QL L+ AW P+ F      WA  +V   L+G L
Sbjct:    61 GYGSYMVWKELGGFSEEAVVPLGLYAGQLALNWAWPPLFFGTRQMGWA--LVDLLLTGGL 118

Query:   160 VWYCRVV-EEVNPIAGDLMKPCVAWAALLSLVN 191
                  V    V+P A  L+ P +AW A  + +N
Sbjct:   119 AGATAVAWHRVSPPAARLLYPYLAWLAFAAALN 151

GO:0005739 "mitochondrion" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1SJR8 TSPO "Translocator protein" [Sus scrofa (taxid:9823)]

 Score = 143 (55.4 bits), Expect = 5.2e-10, P = 5.2e-10
 Identities = 43/122 (35%), Positives = 61/122 (50%)

Query:    76 YVKQEKPFWFPSLLVLHTASLASTFL--MGLSSWLVWAE-GGFHKKPTV-LYLCLAQLGL 131
             Y   +KP W P    L  A +  T    MG  S+++W E GGF ++  V L L   QL L
Sbjct:    34 YAGLQKPSWHPPHWTL--APIWGTLYSAMGYGSYMIWKELGGFSEEAVVPLGLYAGQLAL 91

Query:   132 SLAWDPIVFHLGAYWAG-LVVSTALSGSLVWYCRVV-EEVNPIAGDLMKPCVAWAALLSL 189
             + AW P+ F  GA   G  +V   L+G L     V   +V+P+A  L+ P +AW A  + 
Sbjct:    92 NWAWPPLFF--GARQMGWALVDLVLTGGLAAATAVAWYQVSPLAARLLYPYLAWLAFAAT 149

Query:   190 VN 191
             +N
Sbjct:   150 LN 151

GO:0005739 "mitochondrion" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1NZA2 TSPO "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
 Identities = 47/130 (36%), Positives = 61/130 (46%)

Query:    76 YVKQEKPFWFPSLLVLHTASLASTFL--MGLSSWLVWAE-GGFHKKPTV-LYLCLAQLGL 131
             Y    KP W P   V   A +  T    MG  S+LVW E GGF +K  V L L   QL L
Sbjct:    37 YESLRKPSWCPPNWVF--APVWGTLYTSMGYGSYLVWKELGGFTEKAAVPLGLYAGQLAL 94

Query:   132 SLAWDPIVFHLGAYWAG-------LVVSTALSGSLVWYCRVVEEVNPIAGDLMKPCVAWA 184
             + AW PI F  GA+  G       L   TA + +  WY      +N  A  LM P +AW 
Sbjct:    95 NWAWTPIFF--GAHKMGWGLATLLLTTGTATATTASWY-----HINRTAAYLMVPYLAWL 147

Query:   185 ALLSLVNLKL 194
              + S++N ++
Sbjct:   148 TMASVLNYRI 157

GO:0016021 "integral to membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

RGD|2228 Tspo "translocator protein" [Rattus norvegicus (taxid:10116)]

 Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
 Identities = 52/151 (34%), Positives = 71/151 (47%)

Query:    55 AVALPLSLTL---LNIYF-NGSSDR-YVKQEKPFWFPSLLVLHTASLASTFL--MGLSSW 107
             AV L L  +L   +  YF  G   R Y   +KP W P    L  A +  T    MG  S+
Sbjct:     8 AVGLTLVPSLGGFMGAYFVRGEGLRWYASLQKPSWHPPRWTL--APIWGTLYSAMGYGSY 65

Query:   108 LVWAE-GGFHKKPTV-LYLCLAQLGLSLAWDPIVFHLGAY-WA----GLVVSTALSGSLV 160
             ++W E GGF ++  V L L   QL L+ AW PI F      WA     LV   A + +L 
Sbjct:    66 IIWKELGGFTEEAMVPLGLYTGQLALNWAWPPIFFGARQMGWALVDLMLVSGVATATTLA 125

Query:   161 WYCRVVEEVNPIAGDLMKPCVAWAALLSLVN 191
             W+      V+P A  L+ P +AW A  +++N
Sbjct:   126 WH-----RVSPPAARLLYPYLAWLAFATMLN 151

GO:0005497 "androgen binding" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005739 "mitochondrion" evidence=ISO;IDA;TAS

GO:0005741 "mitochondrial outer membrane" evidence=IDA

GO:0006694 "steroid biosynthetic process" evidence=IMP

GO:0006811 "ion transport" evidence=IDA

GO:0006821 "chloride transport" evidence=IDA

GO:0006950 "response to stress" evidence=IEP

GO:0007568 "aging" evidence=IEP

GO:0008347 "glial cell migration" evidence=IDA

GO:0008503 "benzodiazepine receptor activity" evidence=IDA

GO:0010042 "response to manganese ion" evidence=IEP

GO:0010266 "response to vitamin B1" evidence=IEP

GO:0010940 "positive regulation of necrotic cell death" evidence=IMP

GO:0014012 "peripheral nervous system axon regeneration" evidence=IEP

GO:0016021 "integral to membrane" evidence=IEA

GO:0030325 "adrenal gland development" evidence=IEP

GO:0032570 "response to progesterone stimulus" evidence=IEP

GO:0032720 "negative regulation of tumor necrosis factor production" evidence=IDA

GO:0033574 "response to testosterone stimulus" evidence=IEP

GO:0042493 "response to drug" evidence=IEP

GO:0043065 "positive regulation of apoptotic process" evidence=IMP

GO:0045019 "negative regulation of nitric oxide biosynthetic process" evidence=IDA

GO:0048265 "response to pain" evidence=IEP

GO:0048266 "behavioral response to pain" evidence=IMP

GO:0048678 "response to axon injury" evidence=IEP

GO:0050810 "regulation of steroid biosynthetic process" evidence=IMP

GO:0051901 "positive regulation of mitochondrial depolarization" evidence=IDA

GO:0051928 "positive regulation of calcium ion transport" evidence=IMP

GO:0060242 "contact inhibition" evidence=IDA

GO:0060252 "positive regulation of glial cell proliferation" evidence=IDA

GO:0060253 "negative regulation of glial cell proliferation" evidence=IDA

GO:0071222 "cellular response to lipopolysaccharide" evidence=IEP

GO:0071294 "cellular response to zinc ion" evidence=IEP

GO:0071476 "cellular hypotonic response" evidence=IEP

GO:2000379 "positive regulation of reactive oxygen species metabolic process" evidence=IDA

UNIPROTKB|Q6UN27 TSPO "Translocator protein" [Sus scrofa (taxid:9823)]

 Score = 140 (54.3 bits), Expect = 1.1e-09, P = 1.1e-09
 Identities = 42/122 (34%), Positives = 61/122 (50%)

Query:    76 YVKQEKPFWFPSLLVLHTASLASTFL--MGLSSWLVWAE-GGFHKKPTV-LYLCLAQLGL 131
             Y   +KP W P    L  A +  T    MG  S+++W E GGF ++  V L L   QL L
Sbjct:    34 YAGLQKPSWHPPHWTL--APIWGTLYSAMGYGSYMIWKELGGFSEEAVVPLGLYAGQLAL 91

Query:   132 SLAWDPIVFHLGAYWAG-LVVSTALSGSLVWYCRVV-EEVNPIAGDLMKPCVAWAALLSL 189
             + AW P+ F  GA   G  +V   L+G +     V   +V+P+A  L+ P +AW A  + 
Sbjct:    92 NWAWPPLFF--GARQMGWALVDLVLTGGVAAATAVAWYQVSPLAARLLYPYLAWLAFAAT 149

Query:   190 VN 191
             +N
Sbjct:   150 LN 151

GO:0031966 "mitochondrial membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

MGI|MGI:88222 Tspo "translocator protein" [Mus musculus (taxid:10090)]

 Score = 139 (54.0 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 53/151 (35%), Positives = 70/151 (46%)

Query:    55 AVALPLSLTL---LNIYF-NGSSDR-YVKQEKPFWFPSLLVLHTASLASTFL--MGLSSW 107
             AV L L  +L   +  YF  G   R Y   +KP W P    L  A +  T    MG  S+
Sbjct:     8 AVGLTLVPSLGGFMGAYFVRGEGLRWYASLQKPSWHPPRWTL--APIWGTLYSAMGYGSY 65

Query:   108 LVWAE-GGFHKKPTV-LYLCLAQLGLSLAWDPIVFHLGAY-WAG----LVVSTALSGSLV 160
             +VW E GGF +   V L L   QL L+ AW PI F      WA     LV   A + +L 
Sbjct:    66 IVWKELGGFTEDAMVPLGLYTGQLALNWAWPPIFFGARQMGWALADLLLVSGVATATTLA 125

Query:   161 WYCRVVEEVNPIAGDLMKPCVAWAALLSLVN 191
             W+      V+P A  L+ P +AW A  +++N
Sbjct:   126 WH-----RVSPPAARLLYPYLAWLAFATVLN 151

GO:0005497 "androgen binding" evidence=ISO

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005741 "mitochondrial outer membrane" evidence=ISO

GO:0006694 "steroid biosynthetic process" evidence=ISO

GO:0006811 "ion transport" evidence=ISO

GO:0006821 "chloride transport" evidence=ISO

GO:0008347 "glial cell migration" evidence=ISO

GO:0008503 "benzodiazepine receptor activity" evidence=ISO

GO:0010940 "positive regulation of necrotic cell death" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0032720 "negative regulation of tumor necrosis factor production" evidence=ISO

GO:0043065 "positive regulation of apoptotic process" evidence=ISO

GO:0045019 "negative regulation of nitric oxide biosynthetic process" evidence=ISO

GO:0048266 "behavioral response to pain" evidence=ISO

GO:0050810 "regulation of steroid biosynthetic process" evidence=ISO

GO:0051901 "positive regulation of mitochondrial depolarization" evidence=ISO

GO:0051928 "positive regulation of calcium ion transport" evidence=ISO

GO:0060242 "contact inhibition" evidence=ISO

GO:0060252 "positive regulation of glial cell proliferation" evidence=ISO

GO:0060253 "negative regulation of glial cell proliferation" evidence=ISO

GO:2000379 "positive regulation of reactive oxygen species metabolic process" evidence=ISO

UNIPROTKB|E2RDM9 TSPO2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 136 (52.9 bits), Expect = 2.9e-09, P = 2.9e-09
 Identities = 42/140 (30%), Positives = 69/140 (49%)

Query:    56 VALP-LSLTLLNIYFNGSSDR-YVKQEKPFWFPSLLVLHTASLASTFLMGLSSWLVWAE- 112
             VALP L   L+++       R Y   +KP W P   VL    +   F+MG +S+LVW + 
Sbjct:     9 VALPHLGPILVSLLTRHRMIRWYDIPKKPPWCPPHKVLLAGWITIYFVMGYASYLVWKDL 68

Query:   113 GGFHKKPTVLYLCLAQLGLSLAWDPIVFHLGAYWAGLVV--STALSGSLVWYCRVVEEVN 170
             GG   +P  L L L  + L+++W  ++F   A+  GL +     L G +V    +   +N
Sbjct:    69 GGGFGRPLALPLGLYAVQLAVSWAVLIFFFAAHAHGLALLHMLLLYGLVVSTALIWHPIN 128

Query:   171 PIAGDLMKPCVAWAALLSLV 190
              +A  L+ P +AW  + + +
Sbjct:   129 KLAAVLLLPYLAWLTVTASI 148

GO:0015485 "cholesterol binding" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O82245	TSPO_ARATH	No assigned EC number	0.4595	0.9898	0.9948	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	197
pfam03073	147	pfam03073, TspO_MBR, TspO/MBR family	3e-15
COG3476	161	COG3476, COG3476, Tryptophan-rich sensory protein	3e-10

>gnl|CDD|217354 pfam03073, TspO_MBR, TspO/MBR family

 Score = 69.1 bits (170), Expect = 3e-15
 Identities = 38/144 (26%), Positives = 61/144 (42%), Gaps = 2/144 (1%)

Query: 55  AVALPLSLTLLNIYF-NGSSDRYVKQEKPFWFPSLLVLHTASLASTFLMGLSSWLVWAEG 113
            +A+ L+   L   F   SS+ Y    KP W P   V          LMG++++LVW  G
Sbjct: 3   FIAICLAAGFLGGLFTPTSSEWYASLRKPSWTPPNWVFGPVWTVLYILMGIAAYLVWRAG 62

Query: 114 GFHKKP-TVLYLCLAQLGLSLAWDPIVFHLGAYWAGLVVSTALSGSLVWYCRVVEEVNPI 172
              K+    L L   QL L+  W P+ F L +    L+V   L   ++        V+ +
Sbjct: 63  PGTKRRKLALALFALQLALNALWSPLFFGLHSPGLALIVILLLWLLVLATIVAFWRVSRL 122

Query: 173 AGDLMKPCVAWAALLSLVNLKLVF 196
           A  L+ P + W +  + +N  +  
Sbjct: 123 AALLLVPYLLWVSFATYLNYSIWR 146

Tryptophan-rich sensory protein (TspO) is an integral membrane protein that acts as a negative regulator of the expression of specific photosynthesis genes in response to oxygen/light. It is involved in the efflux of porphyrin intermediates from the cell. This reduces the activity of coproporphyrinogen III oxidase, which is thought to lead to the accumulation of a putative repressor molecule that inhibits the expression of specific photosynthesis genes. Several conserved aromatic residues are necessary for TspO function: they are thought to be involved in binding porphyrin intermediates. In, the rat mitochondrial peripheral benzodiazepine receptor (MBR) was shown to not only retain its structure within a bacterial outer membrane, but also to be able to functionally substitute for TspO in TspO- mutants, and to act in a similar manner to TspO in its in situ location: the outer mitochondrial membrane. The biological significance of MBR remains unclear, however. It is thought to be involved in a variety of cellular functions, including cholesterol transport in steroidogenic tissues. Length = 147

>gnl|CDD|226007 COG3476, COG3476, Tryptophan-rich sensory protein (mitochondrial benzodiazepine receptor homolog) [Signal transduction mechanisms]

 Score = 55.8 bits (135), Expect = 3e-10
 Identities = 34/115 (29%), Positives = 55/115 (47%), Gaps = 5/115 (4%)

Query: 80  EKPFWFPSLLVLHTASLASTFLMGLSSWLVWAEG---GFHKKPTVLYLCLAQLGLSLAWD 136
           +KPFW P              L+G+S++LVW +G   G       LYL   QL L+ AW 
Sbjct: 38  KKPFWLPPEWAFPPVWTVLYALIGISAYLVWEKGPGQGTSWLLMFLYL--LQLILNFAWS 95

Query: 137 PIVFHLGAYWAGLVVSTALSGSLVWYCRVVEEVNPIAGDLMKPCVAWAALLSLVN 191
           PI F L +  A L++   L  +++    +V  ++  A  L+ P + W+   + +N
Sbjct: 96  PIFFGLRSLGAALIIILLLWIAVLVLTIIVWPISKTASLLLIPYLLWSPFATYLN 150

Length = 161

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	197
PF03073	148	TspO_MBR: TspO/MBR family; InterPro: IPR004307 Mem	100.0
COG3476	161	Tryptophan-rich sensory protein (mitochondrial ben	100.0
PHA02980	160	hypothetical protein; Provisional	100.0
KOG3797	168	consensus Peripheral-type benzodiazepine receptor	100.0
COG4709	195	Predicted membrane protein [Function unknown]	82.43

>PF03073 TspO_MBR: TspO/MBR family; InterPro: IPR004307 Members of this group are involved in transmembrane signalling

Probab=100.00  E-value=1.8e-40  Score=264.78  Aligned_cols=143  Identities=31%  Similarity=0.516  Sum_probs=135.2

Q ss_pred             HHHHHHHHHHHHHHHHcCC--ccccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhhcC-CCCcchhHHHHHHHHHH
Q 036337           54 MAVALPLSLTLLNIYFNGS--SDRYVKQEKPFWFPSLLVLHTASLASTFLMGLSSWLVWAEG-GFHKKPTVLYLCLAQLG  130 (197)
Q Consensus        54 ~~i~~p~~~g~~~~~~~~~--~~wY~~L~KP~w~PP~~vF~ivW~ilY~lmg~A~~lv~~~~-~~~~~~~al~ly~~ql~  130 (197)
                      +++++|.++|.++++++++  ++||++|+||+|+||+|+|+++|+++|++||+|+|++|+++ +.++++.++.+|.+|++
T Consensus         2 i~~~~~~~~~~~~~~~~~~~~~~wy~~L~kP~~~Pp~~~f~~vW~~ly~l~g~a~~~v~~~~~~~~~~~~~l~l~~~~l~   81 (148)
T PF03073_consen    2 IFIAAPLVVGFLSGYLTPTDVSEWYDSLKKPSWTPPGWVFGPVWTILYILMGIASYLVWRKGGGSPRRRRALALYAIQLA   81 (148)
T ss_pred             eeeHHHHHHHHHHHHHcCCcchHHHhhccCCCCCCcccHHHHHHHHHHHHHHHHHHhhHhcccCcchhHHHHHHHHHHHH
Confidence            5678899999999999865  47899999999999999999999999999999999999987 44556789999999999


Q ss_pred             hhhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhHHHHHHHHHHHHHHHhhh
Q 036337          131 LSLAWDPIVFHLGAYWAGLVVSTALSGSLVWYCRVVEEVNPIAGDLMKPCVAWAALLSLVNLKLVF  196 (197)
Q Consensus       131 LN~~W~~lfF~~~~~~lali~il~l~~~~~~~~~~f~~i~~~Ag~Ll~PYl~W~~fAt~LN~~i~~  196 (197)
                      +|.+|+++||+.|++++|+++++++++++..++..++++||.||++++||++|++|||++|+++|+
T Consensus        82 ln~~W~~ifF~~~~~~la~~~~~~l~~~~~~~~~~~~~~~~~a~~l~~Pyl~W~~fAt~Ln~~i~~  147 (148)
T PF03073_consen   82 LNFAWSPIFFGLRSLGLALIIILALLGLLAALIFAFWKISRTAGLLLIPYLAWLSFATYLNFSIWR  147 (148)
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccHhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999999999999999999986

In both prokaryotes and mitochondria they are localized to the outer membrane, and have been shown to bind and transport dicarboxylic tetrapyrrole intermediates of the haem biosynthetic pathway [, ]. They are associated with the major outer membrane porins (in prokaryotes) and with the voltage-dependent anion channel (in mitochondria) []. Rhodobacter sphaeroides TspO (previously CrtK) is involved in signal transduction, functioning as a negative regulator of the expression of some photosynthesis genes (PpsR/AppA repressor/antirepressor regulon). This down-regulation is believed to be in response to oxygen levels. TspO works through (or modulates) the PpsR/AppA system and acts upstream of the site of action of these regulatory proteins []. It has been suggested that the TspO regulatory pathway works by regulating the efflux of certain tetrapyrrole intermediates of the haem/bacteriochlorophyll biosynthetic pathways in response to the availability of molecular oxygen, thereby causing the accumulation of a biosynthetic intermediate that serves as a corepressor for the regulated genes []. A homologue of the TspO protein in Rhizobium meliloti (Sinorhizobium meliloti) is involved in regulating expression of the ndi locus in response to stress conditions []. There is evidence that the S. meliloti TspO acts through, or in addition to, the FixL regulatory system. In animals, the peripheral-type benzodiazepine receptor (PBR, MBR) is a mitochondrial protein (located in the outer mitochondrial membrane) characterised by its ability to bind with nanomolar affinity to a variety of benzodiazepine-like drugs, as well as to dicarboxylic tetrapyrrole intermediates of the haem biosynthetic pathway. Depending upon the tissue, it was shown to be involved in steroidogenesis, haem biosynthesis, apoptosis, cell growth and differentiation, mitochondrial respiratory control, and immune and stress response, but the precise function of the PBR remains unclear. The role of PBR in the regulation of cholesterol transport from the outer to the inner mitochondrial membrane, the rate-determining step in steroid biosynthesis, has been studied in detail. PBR is required for the binding, uptake and release, upon ligand activation, of the substrate cholesterol []. PBR forms a multimeric complex with the voltage-dependent anion channel (VDAC) [] and adenine nucleotide carrier []. Molecular modeling of PBR suggested that it might function as a channel for cholesterol. Indeed, cholesterol uptake and transport by bacterial cells was induced upon PBR expression. Mutagenesis studies identified a cholesterol recognition/interaction motif (CRAC) in the cytoplasmic C terminus of PBR [, ]. In complementation experiments, rat PBR (pk18) functionally substitutes for its homologue TspO in R. sphaeroides, negatively affecting transcription of specific photosynthesis genes []. This suggests that PBR may function as an oxygen sensor, transducing an oxygen-triggered signal leading to an adaptive cellular response. These observations suggest that fundamental aspects of this receptor and the downstream signal transduction pathway are conserved in bacteria and higher eukaryotic mitochondria. The alpha-3 subdivision of the purple bacteria is considered to be a likely source of the endosymbiont that ultimately gave rise to the mitochondrion. Therefore, it is possible that the mammalian PBR remains both evolutionarily and functionally related to the TspO of R. sphaeroides.; GO: 0016021 integral to membrane

>COG3476 Tryptophan-rich sensory protein (mitochondrial benzodiazepine receptor homolog) [Signal transduction mechanisms]

Probab=100.00  E-value=2.2e-39  Score=261.43  Aligned_cols=147  Identities=26%  Similarity=0.448  Sum_probs=131.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHcC-Cc-cccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCc-chhHHHHHH
Q 036337           50 KSLSMAVALPLSLTLLNIYFNG-SS-DRYVKQEKPFWFPSLLVLHTASLASTFLMGLSSWLVWAEGGFHK-KPTVLYLCL  126 (197)
Q Consensus        50 ~~l~~~i~~p~~~g~~~~~~~~-~~-~wY~~L~KP~w~PP~~vF~ivW~ilY~lmg~A~~lv~~~~~~~~-~~~al~ly~  126 (197)
                      .++..++++..+.+.+++++.. .+ +||++|+||+|.||+|+||+||+++|++||+|+|++|+++..++ .+..+.+|+
T Consensus         6 ~~~~~~i~~~~~~~a~gs~~~~~~~~~wy~~L~kP~w~pp~~~f~~vWtvLy~l~~iSa~lvW~~~~~~~~~~~~~~ly~   85 (161)
T COG3476           6 KPLWLSILLVALAVALGSFFISSRDPNWYNNLKKPFWLPPEWAFPPVWTVLYALIGISAYLVWEKGPGQGTSWLLMFLYL   85 (161)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccHHHHHhccCCCCCChHHHhhHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHH
Confidence            3455566666666666666653 33 58999999999999999999999999999999999999885444 578899999


Q ss_pred             HHHHhhhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhHHHHHHHHHHHHHHHhhh
Q 036337          127 AQLGLSLAWDPIVFHLGAYWAGLVVSTALSGSLVWYCRVVEEVNPIAGDLMKPCVAWAALLSLVNLKLVF  196 (197)
Q Consensus       127 ~ql~LN~~W~~lfF~~~~~~lali~il~l~~~~~~~~~~f~~i~~~Ag~Ll~PYl~W~~fAt~LN~~i~~  196 (197)
                      +|+++|++|+|+||++|++++|+++++.++++++.++..++|+|++|++|++||++|++||||||+.|++
T Consensus        86 ~ql~ln~awspiff~l~~l~~a~i~~lll~~~vl~l~i~~~~~s~~As~LLiPYllW~~fat~L~~~i~~  155 (161)
T COG3476          86 LQLILNFAWSPIFFGLRSLGAALIIILLLWIAVLVLTIIVWPISKTASLLLIPYLLWSPFATYLNFSIWQ  155 (161)
T ss_pred             HHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999985

>PHA02980 hypothetical protein; Provisional

Probab=100.00  E-value=3.7e-39  Score=260.55  Aligned_cols=120  Identities=18%  Similarity=0.267  Sum_probs=114.9

Q ss_pred             ccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHH
Q 036337           75 RYVKQEKPFWFPSLLVLHTASLASTFLMGLSSWLVWAEGGFHKKPTVLYLCLAQLGLSLAWDPIVFHLGAYWAGLVVSTA  154 (197)
Q Consensus        75 wY~~L~KP~w~PP~~vF~ivW~ilY~lmg~A~~lv~~~~~~~~~~~al~ly~~ql~LN~~W~~lfF~~~~~~lali~il~  154 (197)
                      .|++|+||+|+||+|+||+||+++|++||+|+|++|++++  +.+.++.+|++|+++|++|+++||++|++++|++++++
T Consensus        32 ~Y~~L~KP~~~PP~wvF~pVWtiLY~lMgiA~~lvw~~~~--~~~~al~ly~~QL~LN~~WS~iFF~~~~~~lAli~ill  109 (160)
T PHA02980         32 NYTKSNKHLIFPPYYVRFSLYIISYIFMGHGMYLIHTRRR--DSNELIAYYILQLSINLSWFIVFYEMHMLRLSIAISTF  109 (160)
T ss_pred             CCccccCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHccc--ccchHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHH
Confidence            4999999999999999999999999999999999997732  25788999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhhhHHHHhhHHHHHHHHHHHHHHHhhh
Q 036337          155 LSGSLVWYCRVVEEVNPIAGDLMKPCVAWAALLSLVNLKLVF  196 (197)
Q Consensus       155 l~~~~~~~~~~f~~i~~~Ag~Ll~PYl~W~~fAt~LN~~i~~  196 (197)
                      ++++++.++..|+++|+.||+|++||++|++|||+||+++|+
T Consensus       110 L~~lv~~~~~~f~~i~~~Aa~LliPYl~Wv~FAt~LN~~I~~  151 (160)
T PHA02980        110 SICLSVYNIYLWRFETDIIDKYVLPYLVTSYINLLLNYYIIR  151 (160)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999986

>KOG3797 consensus Peripheral-type benzodiazepine receptor and related proteins [Signal transduction mechanisms]

Probab=100.00  E-value=1.1e-37  Score=247.60  Aligned_cols=147  Identities=29%  Similarity=0.310  Sum_probs=131.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHcCCccccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhhcCC-CC--cchhHHHHHH
Q 036337           50 KSLSMAVALPLSLTLLNIYFNGSSDRYVKQEKPFWFPSLLVLHTASLASTFLMGLSSWLVWAEGG-FH--KKPTVLYLCL  126 (197)
Q Consensus        50 ~~l~~~i~~p~~~g~~~~~~~~~~~wY~~L~KP~w~PP~~vF~ivW~ilY~lmg~A~~lv~~~~~-~~--~~~~al~ly~  126 (197)
                      ++...++..|.++|..++-..+..+||+.|+||+|.||++||+++|+.+|..||+++|+||+++| +.  ..+.++++|.
T Consensus        11 ~~~~~~~l~p~~~~~f~~~~q~~~~wya~lKkPs~~Pp~~vf~pvw~llys~mGYaSyLvyK~gggf~~naakl~lglYg   90 (168)
T KOG3797|consen   11 ISKNGASLVPVLGGWFIGNSQKPRKWYANLKKPSFHPPASVFGPVWTLLYSTMGYASYLVYKAGGGFITNAAKLPLGLYG   90 (168)
T ss_pred             hhhcceeecccceeEEecCCcchHHHHHhccCCCCCCccccccHHHHHHHcccccceeEEEecCCCcccccccchhHHHH
Confidence            33444777788888777622223479999999999999999999999999999999999999985 43  3478899999


Q ss_pred             HHHHhhhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhHHHHHHHHHHHHHHHhhh
Q 036337          127 AQLGLSLAWDPIVFHLGAYWAGLVVSTALSGSLVWYCRVVEEVNPIAGDLMKPCVAWAALLSLVNLKLVF  196 (197)
Q Consensus       127 ~ql~LN~~W~~lfF~~~~~~lali~il~l~~~~~~~~~~f~~i~~~Ag~Ll~PYl~W~~fAt~LN~~i~~  196 (197)
                      .|+.+|++|+|+||+.++++++++++.++.+++.++...||+++|+||.|++||++|+.|||+||+.||.
T Consensus        91 aqlaln~Aw~Pif~g~~~~g~~l~dl~~ls~aaaa~~~a~y~v~~tAglllvPylaWlafatyL~y~v~k  160 (168)
T KOG3797|consen   91 AQLALNWAWMPIFFGLAKPGLALADLGILSGAAAALAVAWYPVAPTAGLLLVPYLAWLAFATYLNYNVWK  160 (168)
T ss_pred             HHHHHHhhhhhhhhhccccCcchhhHHHHHHHHHHHHhheeecCcccceeehHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999999999999999999999999999999999999999984

>COG4709 Predicted membrane protein [Function unknown]

Probab=82.43  E-value=27  Score=29.49  Aligned_cols=33  Identities=12%  Similarity=0.261  Sum_probs=19.5

Q ss_pred             hhhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 036337          134 AWDPIVFHLGAYWAGLVVSTALSGSLVWYCRVV  166 (197)
Q Consensus       134 ~W~~lfF~~~~~~lali~il~l~~~~~~~~~~f  166 (197)
                      .-+-.|++..+..+++..+.+.+..+-+.++.+
T Consensus       146 ~i~a~f~~IGs~lLgl~~~~~if~iv~~~~rl~  178 (195)
T COG4709         146 SISAFFIGIGSLLLGLGLGIVIFAIVKYASRLT  178 (195)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334446666777777776666665555544433

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00