Citrus Sinensis ID: 036363

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240
Protein Sequence
MGGSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEFDEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEANDETLEDYLGRECPKPLKEILHLFDNRCVLFDNKTKDAAKRTEQIGKLRSLQLAREHAARLKVEVTAKSTQMKSDDKIHKLREDLERAQRENEGLHKGVEI
Secondary Structure (PSIPRED)
ccccccccccccccccccEEEEEEEccccccHHHHHHHHHcccccccccccccccccEEEEEEEEEccEEEEEEcccccccccccccccccEEEEEEEEccccccHHHHHHHHHHHHHHcHHHHcEEEEEEEcccccccccccHHHHHcccccHHHHHHHHHHcccEEEEEcccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccEEEEEEEccccccccccccHccccHHHHHccccccHHHHHHcccccccccEEEEEEccccccccccccccccEEEEEEEEccccccHHHHHHHHHHHHHHcHHHHHEEEEEEEccHHHccccccHHHHHHccccHHHHHHHHHHcccEEEEccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mggsridddceltspsngvRTVVLVGhtgngksatgnsilgrrafksrasssgvtstCEMHRtvlkdgqvvnvidtpglfdfsagsefdEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGrdeleandETLEdylgrecpkpLKEILHLFDNRCVLFDNKTKDAAKRTEQIGKLRSLQLAREHAARLKVEVTakstqmksddKIHKLREDLERAQREneglhkgvei
Flexible Loop (DISEMBL)
mggsridddceltspsngvrTVVLVghtgngksatgnsilgrrafksrasssgvtstCEMHrtvlkdgqvvnVIDTPGLFDFSAGSEFDEIHAALVVFSVRSRFSQEEEATLhslqtlfgkNCFDYMIVVFSGRDELEANDETLEDYLGRECPKPLKEILHLFDNRCVLFDNKTKDAAKRTEQIGKLRSLQLAREHAARLkvevtakstqmksddkiHKLREDLEraqreneglhkgvei
Low Complexity Region (SEG)
MGGSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEFDEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEANDETLEDYLGRECPKPLKEILHLFDNRCVLFDNKTKDAAKRTEQIGKLRSLQLAREHAARLKVEVTAKSTQMKSDDKIHKLREDLERAQRENEGLHKGVEI
Disordered region (IsUnstruct)
******************VRTVVLVGH*****************************TCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEFDEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEANDETLEDYLGRECPKPLKEILHLFDNRCVLFDNK*******************************************************************
Disordered Region (DISOPRED)
*********************VVLVGHTGNGKSATGNSILGRRAFKSR**********EMHRTVLKDGQVVNVIDTPGLFDFSAGSEFDEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEANDETLEDYLGRECPKPLKEILHLFDNRCVLFDNKTKDAAKRTEQIGKLRSLQLAREHAARLKVEVT********************************VE*
Disordered Region (DISEMBL)
*********CELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAF*************EMHRTVLKDGQVVNVIDTPGLFDFSAGSEFDEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEANDETLEDYLGRECPKPLKEILHLFDNRCVLFDNKTKDAAKRTEQIGKLRSLQLAREHAARLKVE**********DDKIHKLREDLERAQR***********
Disordered Region (DISPRO)
*****************GVRTVVLVGHTGNGKSAT****LGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEFDEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEANDETLEDYLGRECPKPLKEILHLFDNRCVLFDNKTKDAAKRTEQIGKLRSLQLAREHAARLKVEVTAKSTQMKSDDKIHKLREDLERAQRENEGLH*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGGSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEFDEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEANDETLEDYLGRECPKPLKEILHLFDNRCVLFDNKTKDAAKRTEQIGKLRSLQLAREHAARLKVEVTAKSTxxxxxxxxxxxxxxxxxxxxxxxxxxxxVEI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	240	2.2.26 [Sep-21-2011]
O81025	463	Putative protein PHLOEM P	no	no	0.716	0.371	0.481	1e-45
P54120	353	Protein AIG1 OS=Arabidops	no	no	0.883	0.600	0.461	1e-43
Q9NUV9	329	GTPase IMAP family member	yes	no	0.691	0.504	0.352	2e-23
Q99JY3	219	GTPase IMAP family member	no	no	0.687	0.753	0.349	6e-21
Q8K3K9	310	GTPase IMAP family member	no	no	0.716	0.554	0.352	1e-19
Q8NHV1	300	GTPase IMAP family member	no	no	0.687	0.55	0.335	9e-19
Q75N62	688	GTPase IMAP family member	no	no	0.679	0.236	0.360	1e-18
Q8ND71	665	GTPase IMAP family member	no	no	0.666	0.240	0.340	2e-16
Q96F15	307	GTPase IMAP family member	no	no	0.783	0.612	0.287	3e-16
Q8K349	305	GTPase IMAP family member	no	no	0.670	0.527	0.355	4e-16

>sp|O81025|P2A03_ARATH Putative protein PHLOEM PROTEIN 2-LIKE A3 OS=Arabidopsis thaliana GN=PP2A3 PE=4 SV=1

 Score =  182 bits (463), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 89/185 (48%), Positives = 123/185 (66%), Gaps = 13/185 (7%)

Query: 16  SNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVID 75
           S  ++ +VLVG TGNGKS+TGN++LG + FKS+  + GVT  CEM+R  ++DG ++NVID
Sbjct: 2   SEPIKNIVLVGRTGNGKSSTGNTLLGTKQFKSKNQAKGVTMICEMYRAAIQDGPIINVID 61

Query: 76  TPGLFD-FSAGSEFDE------------IHAALVVFSVRSRFSQEEEATLHSLQTLFGKN 122
           TPGL D F  G +               IHA L+V S R R S+EEE+T+++LQ +FG  
Sbjct: 62  TPGLCDSFVPGDDISNEIINCLTMAEEGIHAVLLVLSARGRISKEEESTVNTLQCIFGSQ 121

Query: 123 CFDYMIVVFSGRDELEANDETLEDYLGRECPKPLKEILHLFDNRCVLFDNKTKDAAKRTE 182
             DY IVVF+G D+LE +D+TL+DY    CP+ L ++L L   R VLFDNK+KD  K+ E
Sbjct: 122 ILDYCIVVFTGGDDLEEDDQTLDDYFRAGCPEFLTKVLRLCGGRKVLFDNKSKDEKKKVE 181

Query: 183 QIGKL 187
           Q+ +L
Sbjct: 182 QVKQL 186

Arabidopsis thaliana (taxid: 3702)

>sp|P54120|AIG1_ARATH Protein AIG1 OS=Arabidopsis thaliana GN=AIG1 PE=2 SV=1

 Score =  176 bits (447), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 109/236 (46%), Positives = 140/236 (59%), Gaps = 24/236 (10%)

Query: 13  TSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVN 72
            S  + V  +VLVG TGNGKSATGNSI+  + FKS+  SSGVT  C   + V  +G ++N
Sbjct: 36  ASQPHPVENIVLVGRTGNGKSATGNSIVRSKVFKSKTKSSGVTMECHAVKAVTPEGPILN 95

Query: 73  VIDTPGLFDFSAGSEF--DEI-----------HAALVVFSVRSRFSQEEEATLHSLQTLF 119
           VIDTPGLFD S  +EF   EI           HA L+V SVR+R SQEEE  L +LQ LF
Sbjct: 96  VIDTPGLFDLSVSAEFIGKEIVKCLTLADGGLHAVLLVLSVRTRISQEEEMVLSTLQVLF 155

Query: 120 GKNCFDYMIVVFSGRDELEANDETLEDYLGRECPKPLKEILHLFDNRCVLFDNKTKDAAK 179
           G    DY+IVVF+G D LE +  TLEDYLG   P  LK +L L   R +LFDNKTKD  K
Sbjct: 156 GSKIVDYLIVVFTGGDVLEDDGMTLEDYLGDNMPDFLKRVLILCGQRMILFDNKTKDDEK 215

Query: 180 RTEQIGKLRSL-QLAREHAARLKVEVTAKSTQMKSDDKIHKLREDLERAQRENEGL 234
           +T+Q+ +L  L  L R+    +            +D+  H ++E+ ER ++E E L
Sbjct: 216 KTKQVHELLKLIDLVRKQNNNIPY----------TDEMYHMIKEENERHKKEQEEL 261

Arabidopsis thaliana (taxid: 3702)

>sp|Q9NUV9|GIMA4_HUMAN GTPase IMAP family member 4 OS=Homo sapiens GN=GIMAP4 PE=1 SV=1

 Score =  109 bits (272), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 66/187 (35%), Positives = 103/187 (55%), Gaps = 21/187 (11%)

Query: 15  PSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVI 74
           P N    +VLVG TG GKSATGNSILGR+ F S  ++  +T  CE   +  K+ ++V V+
Sbjct: 26  PRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELV-VV 84

Query: 75  DTPGLFD--FSAGSEFDEI-----------HAALVVFSVRSRFSQEEEATLHSLQTLFGK 121
           DTPG+FD          EI           HA L+V  +  R+++EE      +  +FG+
Sbjct: 85  DTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPL-GRYTEEEHKATEKILKMFGE 143

Query: 122 NCFDYMIVVFSGRDELEANDETLEDYLGRECPKPLKEILHLFDNRCVLFDNKTKDA---A 178
               +MI++F+ +D+L   D  L DYL RE P+ +++++ +F +R    +NK   A   A
Sbjct: 144 RARSFMILIFTRKDDL--GDTNLHDYL-REAPEDIQDLMDIFGDRYCALNNKATGAEQEA 200

Query: 179 KRTEQIG 185
           +R + +G
Sbjct: 201 QRAQLLG 207

May play a role in regulating lymphocyte apoptosis (By similarity). Exhibits intrisinic GTPase activity. Shows a higher affinity for GDP over GTP (about 12-fold higher), and binding shows an absolute requirement for magnesium.

Homo sapiens (taxid: 9606)

>sp|Q99JY3|GIMA4_MOUSE GTPase IMAP family member 4 OS=Mus musculus GN=Gimap4 PE=1 SV=1

 Score =  101 bits (251), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 64/183 (34%), Positives = 98/183 (53%), Gaps = 18/183 (9%)

Query: 22  VVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFD 81
           +VL+G TG GKS+TGNSILG + F S   +  +T  CE  R    DG+ + V+DTPG+FD
Sbjct: 33  IVLLGKTGAGKSSTGNSILGEKVFNSGICAKSITKVCE-KRVSTWDGKELVVVDTPGIFD 91

Query: 82  FSA--GSEFDEI-----------HAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMI 128
                     EI           HA L+V  +  R++ EE      +  +FGK    +MI
Sbjct: 92  TEVPDADTQREITRYVALTSPGPHALLLVVPL-GRYTVEEHKATQKILDMFGKQARRFMI 150

Query: 129 VVFSGRDELEANDETLEDYLGRECPKPLKEILHLFDNRCVLFDNKTKDAAKRTEQIGKLR 188
           ++ + +D+LE  D  + +YL  + PK  +E++H F NR  LF+N+   A K  +++  L 
Sbjct: 151 LLLTRKDDLEDTD--IHEYL-EKAPKFFQEVMHEFQNRYCLFNNRASGAEKEEQKMQLLT 207

Query: 189 SLQ 191
            +Q
Sbjct: 208 LVQ 210

Exhibits intrisinic GTPase activity. Shows a higher affinity for GDP over GTP (about 12-fold higher), and binding shows an absolute requirement for magnesium (By similarity). May play a role in regulating lymphocyte apoptosis.

Mus musculus (taxid: 10090)

>sp|Q8K3K9|GIMA4_RAT GTPase IMAP family member 4 OS=Rattus norvegicus GN=Gimap4 PE=2 SV=1

 Score = 97.1 bits (240), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 68/193 (35%), Positives = 107/193 (55%), Gaps = 21/193 (10%)

Query: 22  VVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFD 81
           +VL+G TG GKS+TGNSILGR+AF S   +  +T  CE   ++  DG+ + V+DTPG+FD
Sbjct: 33  IVLLGKTGAGKSSTGNSILGRKAFLSGICAKSITKVCEKGVSIW-DGKELVVVDTPGIFD 91

Query: 82  FSA--GSEFDEI-----------HAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMI 128
                     EI           HA L+V  +     +E +AT   L ++F K    +MI
Sbjct: 92  TEVPDADTQKEITRCVALTSPGPHALLLVIPLGCYTVEEHKAT-RKLLSMFEKKARRFMI 150

Query: 129 VVFSGRDELEANDETLEDYLGRECPKPLKEILHLFDNRCVLFDNKTKDAAKRTEQIGKLR 188
           ++ + +D+LE  D  + +YL    P+ L+E+++ F NR  LF+NK    A++ EQ  +L 
Sbjct: 151 LLLTRKDDLEDTD--IHEYL-ETAPEVLQELIYEFRNRYCLFNNKA-SGAEQEEQKRQLL 206

Query: 189 SL--QLAREHAAR 199
           +L   + RE+  +
Sbjct: 207 TLVQSMVRENGGK 219

May play a role in regulating lymphocyte apoptosis. Exhibits intrisinic GTPase activity. Shows a higher affinity for GDP over GTP (about 12-fold higher), and binding shows an absolute requirement for magnesium.

Rattus norvegicus (taxid: 10116)

>sp|Q8NHV1|GIMA7_HUMAN GTPase IMAP family member 7 OS=Homo sapiens GN=GIMAP7 PE=2 SV=1

 Score = 94.0 bits (232), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 61/182 (33%), Positives = 102/182 (56%), Gaps = 17/182 (9%)

Query: 22  VVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFD 81
           +VLVG TG+GKSAT N+ILG   F SR ++  VT  C+      + G+ + V+DTPGLFD
Sbjct: 11  IVLVGKTGSGKSATANTILGEEIFDSRIAAQAVTKNCQKASREWQ-GRDLLVVDTPGLFD 69

Query: 82  F--SAGSEFDEIHA----------ALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIV 129
              S  +   EI            A+V+  +  R+++EE+ T+  ++ +FGK+   +M++
Sbjct: 70  TKESLDTTCKEISRCIISSCPGPHAIVLVLLLGRYTEEEQKTVALIKAVFGKSAMKHMVI 129

Query: 130 VFSGRDELEANDETLEDYLGRECPKPLKEILHLFDNRCVLFDNKTKDA-AKRTEQIGKLR 188
           +F+ ++ELE   ++  D++  +    LK I+    NRC  F N  K + A++  Q+ +L 
Sbjct: 130 LFTRKEELEG--QSFHDFIA-DADVGLKSIVKECGNRCCAFSNSKKTSKAEKESQVQELV 186

Query: 189 SL 190
            L
Sbjct: 187 EL 188

Homo sapiens (taxid: 9606)

>sp|Q75N62|GIMA8_MOUSE GTPase IMAP family member 8 OS=Mus musculus GN=Gimap8 PE=2 SV=1

 Score = 93.2 bits (230), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 66/183 (36%), Positives = 96/183 (52%), Gaps = 20/183 (10%)

Query: 22  VVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFD 81
           ++L+G +G GKSATGN+ILGR AF S+  +  VTS+ +  +  L D Q V V+DTP    
Sbjct: 478 IILLGRSGAGKSATGNTILGRSAFFSQLRAQPVTSSSQSGKRTL-DWQDVVVVDTPSFIQ 536

Query: 82  FSAGSEFD------EIHAAL----------VVFSVRSRFSQEEEATLHSLQTLFGKNCFD 125
            + G+E D      EIH  L          V+     RF+QE+E  +  L+  F +N   
Sbjct: 537 -TPGTEKDPSRLKEEIHHCLSLCEEGMKIFVLVLQLGRFTQEDEVVVEQLEASFEENIMK 595

Query: 126 YMIVVFSGRDELEANDETLEDYLGRECPKPLKEILHLFDNRCVLFDNKTKDAAKRTEQIG 185
           YMIV+F+ +++L   D  L DY      K LK+IL   + R   F+NK     + T+  G
Sbjct: 596 YMIVLFTRKEDL--GDGDLHDYTNNTKNKALKKILKKCNGRVCAFNNKETGEDQETQVKG 653

Query: 186 KLR 188
            L+
Sbjct: 654 LLK 656

Exerts an anti-apoptotic effect in the immune system and is involved in responses to infections.

Mus musculus (taxid: 10090)

>sp|Q8ND71|GIMA8_HUMAN GTPase IMAP family member 8 OS=Homo sapiens GN=GIMAP8 PE=1 SV=2

 Score = 85.9 bits (211), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/179 (34%), Positives = 104/179 (58%), Gaps = 19/179 (10%)

Query: 22  VVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFD 81
           ++L+G   +GKSATGN+ILG+  FKS+ S   V   C+    VL++ +VV VIDTP LF 
Sbjct: 13  LLLLGKCRSGKSATGNAILGKHVFKSKFSDQTVIKMCQRESWVLRERKVV-VIDTPDLFS 71

Query: 82  FSAGSEFDE-------------IHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMI 128
             A +E  +             +HA L+V ++   F++E+E T   +Q +FG     ++I
Sbjct: 72  SIACAEDKQRNIQHCLELSAPSLHALLLVIAI-GHFTREDEETAKGIQQVFGAEARRHII 130

Query: 129 VVFSGRDELEANDETLEDYLGRECPKPLKEILHLFDNRCVLFDNKTKDAAKRTEQIGKL 187
           +VF+ +D  +  D+ L+D++  E  KPLK+++  ++ R  +F+NKT    ++  Q+ +L
Sbjct: 131 IVFTRKD--DLGDDLLQDFI--EKNKPLKQLVQDYEGRYCIFNNKTNSKDEQITQVLEL 185

Exerts an anti-apoptotic effect in the immune system and is involved in responses to infections.

Homo sapiens (taxid: 9606)

>sp|Q96F15|GIMA5_HUMAN GTPase IMAP family member 5 OS=Homo sapiens GN=GIMAP5 PE=1 SV=1

 Score = 85.1 bits (209), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 60/209 (28%), Positives = 110/209 (52%), Gaps = 21/209 (10%)

Query: 1   MGGSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM 60
           M   R +D+   T P+     ++LVG TG GKSATGNSILG+  F+S+  +  VT TC++
Sbjct: 12  MAEGRSEDNLSATPPA---LRIILVGKTGCGKSATGNSILGQPVFESKLRAQSVTRTCQV 68

Query: 61  HRTVLKDGQVVNVIDTPGLFDFSAGSE--FDEI-----------HAALVVFSVRSRFSQE 107
            +T   +G+ V V+DTP +F+  A ++  +  I           H  L+V  +  RF+ +
Sbjct: 69  -KTGTWNGRKVLVVDTPSIFESQADTQELYKNIGDCYLLSAPGPHVLLLVIQL-GRFTAQ 126

Query: 108 EEATLHSLQTLFGKNCFDYMIVVFSGRDELEANDETLEDYLGRECPKPLKEILHLFDNRC 167
           +   +  ++ +FG     +++++F+ +++L    + L+DY+       LK+++   + R 
Sbjct: 127 DTVAIRKVKEVFGTGAMRHVVILFTHKEDL--GGQALDDYVANTDNCSLKDLVRECERRY 184

Query: 168 VLFDNKTKDAAKRTEQIGKLRSLQ-LARE 195
             F+N      +R +Q   L  ++ L RE
Sbjct: 185 CAFNNWGSVEEQRQQQAELLAVIERLGRE 213

Required for mitochondrial integrity and T-cell survival. May contribute to T-cell quiescence.

Homo sapiens (taxid: 9606)

>sp|Q8K349|GIMA6_MOUSE GTPase IMAP family member 6 OS=Mus musculus GN=Gimap6 PE=2 SV=1

 Score = 85.1 bits (209), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 64/180 (35%), Positives = 98/180 (54%), Gaps = 19/180 (10%)

Query: 22  VVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFD 81
           ++LVG TG+GKSATGNSILGR+AF+S+ S+  VT+T +   T   +G+ + VIDTP +F 
Sbjct: 106 LLLVGKTGSGKSATGNSILGRQAFESKISARPVTTTFQ-KGTREFEGKELEVIDTPDIFS 164

Query: 82  FSAGSEFDE-----------IHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVV 130
                E               HA L+V  V  R++ E++A    LQ +FG     Y I+V
Sbjct: 165 PQNQPEATAKKICDLLASPGPHAVLLVIQV-GRYTAEDQAVARCLQEIFGNTILAYTILV 223

Query: 131 FSGRDELEANDETLEDYLGRECPKPLKEILHLFDNRCVLFDNKTKDAAKRTEQIGKLRSL 190
           F+ +++L   + +LE+Y+     K L  +    + R   F+NK    A+  EQ  +L+ L
Sbjct: 224 FTRKEDLA--EGSLEEYIQENNNKSLDVLDVACERRHCGFNNK----AQGDEQEAQLKKL 277

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	240
255539412	339	aig1, putative [Ricinus communis] gi|223	0.791	0.560	0.753	4e-82
224146305	335	predicted protein [Populus trichocarpa]	0.791	0.567	0.733	2e-80
296089429	345	unnamed protein product [Vitis vinifera]	0.791	0.550	0.719	3e-79
225460273	340	PREDICTED: protein AIG1 [Vitis vinifera]	0.791	0.558	0.719	3e-79
224136037	259	predicted protein [Populus trichocarpa]	0.737	0.683	0.752	4e-75
356526433	350	PREDICTED: protein AIG1-like [Glycine ma	0.770	0.528	0.696	3e-72
363814318	336	uncharacterized protein LOC100807910 [Gl	0.791	0.565	0.684	5e-72
357470421	340	AIG1 [Medicago truncatula] gi|355506550|	0.958	0.676	0.528	1e-65
388500386	335	unknown [Lotus japonicus]	0.787	0.564	0.640	1e-65
147836179	566	hypothetical protein VITISV_037325 [Viti	0.658	0.279	0.725	2e-65

>gi|255539412|ref|XP_002510771.1| aig1, putative [Ricinus communis] gi|223551472|gb|EEF52958.1| aig1, putative [Ricinus communis]

 Score =  310 bits (793), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 153/203 (75%), Positives = 166/203 (81%), Gaps = 13/203 (6%)

Query: 1   MGGSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM 60
           MGGS IDDD ELTSPSNGVRTVVLVG TGNGKSATGNS+LGR+AFKSRASSSGVTSTCE+
Sbjct: 1   MGGSAIDDDWELTSPSNGVRTVVLVGRTGNGKSATGNSLLGRKAFKSRASSSGVTSTCEL 60

Query: 61  HRTVLKDGQVVNVIDTPGLFDFSAGSEF-------------DEIHAALVVFSVRSRFSQE 107
            +TV+ DGQV+NV+DTPGLFDFSA SEF             D IHA LVVFSVR+RFSQE
Sbjct: 61  QQTVITDGQVINVVDTPGLFDFSAESEFVGKEIVKCINMAKDGIHAVLVVFSVRTRFSQE 120

Query: 108 EEATLHSLQTLFGKNCFDYMIVVFSGRDELEANDETLEDYLGRECPKPLKEILHLFDNRC 167
           EEA L SLQTLFG   FDYMIVVF+G DELE NDETLEDYLGRECP+PL+EIL L  NR 
Sbjct: 121 EEAALRSLQTLFGSKIFDYMIVVFTGGDELEDNDETLEDYLGRECPQPLQEILTLCKNRL 180

Query: 168 VLFDNKTKDAAKRTEQIGKLRSL 190
           VLFDNKTKD  KR EQ+ +L SL
Sbjct: 181 VLFDNKTKDEFKRAEQVHQLLSL 203

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224146305|ref|XP_002325957.1| predicted protein [Populus trichocarpa] gi|222862832|gb|EEF00339.1| predicted protein [Populus trichocarpa]

 Score =  304 bits (778), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 149/203 (73%), Positives = 165/203 (81%), Gaps = 13/203 (6%)

Query: 1   MGGSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM 60
           MGGS +DDD E  SPSNGVRT+VLVG TGNGKSATGNSILGR+AFKSRASSSGVTS+CE+
Sbjct: 1   MGGSAMDDDWEFASPSNGVRTIVLVGRTGNGKSATGNSILGRKAFKSRASSSGVTSSCEL 60

Query: 61  HRTVLKDGQVVNVIDTPGLFDFSAGSEF-------------DEIHAALVVFSVRSRFSQE 107
            RTVL+DGQ++NVIDTPGLFDFSAGSEF             D IHA LVVFSVR+RFSQE
Sbjct: 61  QRTVLRDGQIINVIDTPGLFDFSAGSEFVGREIVKCINMAKDGIHAVLVVFSVRTRFSQE 120

Query: 108 EEATLHSLQTLFGKNCFDYMIVVFSGRDELEANDETLEDYLGRECPKPLKEILHLFDNRC 167
           EEA L SLQTLFG    DYMIVVF+G DELE NDETLEDYLGRECP+PLKE+L L +NR 
Sbjct: 121 EEAALRSLQTLFGSKILDYMIVVFTGGDELEDNDETLEDYLGRECPQPLKEVLTLCENRR 180

Query: 168 VLFDNKTKDAAKRTEQIGKLRSL 190
           VLF+NKTKD  K  EQ+ +L SL
Sbjct: 181 VLFNNKTKDVLKGVEQVQELLSL 203

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296089429|emb|CBI39248.3| unnamed protein product [Vitis vinifera]

 Score =  300 bits (769), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 146/203 (71%), Positives = 165/203 (81%), Gaps = 13/203 (6%)

Query: 1   MGGSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM 60
           MGGS IDD+ E T+PS+GVRT+VLVG TGNGKSATGNSILGR++FKSRASSSGVTSTCE+
Sbjct: 6   MGGSSIDDEWEFTAPSSGVRTLVLVGRTGNGKSATGNSILGRKSFKSRASSSGVTSTCEL 65

Query: 61  HRTVLKDGQVVNVIDTPGLFDFSAGSEF-------------DEIHAALVVFSVRSRFSQE 107
            RT+L+DGQ+VNVIDTPGLFD SA S+F             D +HA LVVFSVR+RFS+E
Sbjct: 66  QRTILRDGQIVNVIDTPGLFDLSAESDFVGKEIVKCIDLAKDGVHAVLVVFSVRTRFSKE 125

Query: 108 EEATLHSLQTLFGKNCFDYMIVVFSGRDELEANDETLEDYLGRECPKPLKEILHLFDNRC 167
           EEA LHSLQTLFG    DYMIVVF+G DELE NDETLEDYLGRECP+PLK+ L L  NR 
Sbjct: 126 EEAALHSLQTLFGSKIIDYMIVVFTGGDELEDNDETLEDYLGRECPEPLKQTLLLCQNRL 185

Query: 168 VLFDNKTKDAAKRTEQIGKLRSL 190
           VLFDNKTKD AK+ EQ+ KL SL
Sbjct: 186 VLFDNKTKDEAKKYEQVQKLLSL 208

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225460273|ref|XP_002281996.1| PREDICTED: protein AIG1 [Vitis vinifera]

 Score =  300 bits (768), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 146/203 (71%), Positives = 165/203 (81%), Gaps = 13/203 (6%)

Query: 1   MGGSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM 60
           MGGS IDD+ E T+PS+GVRT+VLVG TGNGKSATGNSILGR++FKSRASSSGVTSTCE+
Sbjct: 1   MGGSSIDDEWEFTAPSSGVRTLVLVGRTGNGKSATGNSILGRKSFKSRASSSGVTSTCEL 60

Query: 61  HRTVLKDGQVVNVIDTPGLFDFSAGSEF-------------DEIHAALVVFSVRSRFSQE 107
            RT+L+DGQ+VNVIDTPGLFD SA S+F             D +HA LVVFSVR+RFS+E
Sbjct: 61  QRTILRDGQIVNVIDTPGLFDLSAESDFVGKEIVKCIDLAKDGVHAVLVVFSVRTRFSKE 120

Query: 108 EEATLHSLQTLFGKNCFDYMIVVFSGRDELEANDETLEDYLGRECPKPLKEILHLFDNRC 167
           EEA LHSLQTLFG    DYMIVVF+G DELE NDETLEDYLGRECP+PLK+ L L  NR 
Sbjct: 121 EEAALHSLQTLFGSKIIDYMIVVFTGGDELEDNDETLEDYLGRECPEPLKQTLLLCQNRL 180

Query: 168 VLFDNKTKDAAKRTEQIGKLRSL 190
           VLFDNKTKD AK+ EQ+ KL SL
Sbjct: 181 VLFDNKTKDEAKKYEQVQKLLSL 203

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224136037|ref|XP_002327365.1| predicted protein [Populus trichocarpa] gi|222835735|gb|EEE74170.1| predicted protein [Populus trichocarpa]

 Score =  286 bits (733), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 143/190 (75%), Positives = 155/190 (81%), Gaps = 13/190 (6%)

Query: 14  SPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNV 73
           SPSNGVRTVVLVG TGNGKSATGNSILG++AFKSRASSSGVTSTCE+  TVL DGQ++NV
Sbjct: 2   SPSNGVRTVVLVGRTGNGKSATGNSILGKKAFKSRASSSGVTSTCELQSTVLGDGQIINV 61

Query: 74  IDTPGLFDFSAGSEF-------------DEIHAALVVFSVRSRFSQEEEATLHSLQTLFG 120
           IDTPGLFDFSAGSEF             D IHA LVVFSVR+RFSQEEEA L SLQTLFG
Sbjct: 62  IDTPGLFDFSAGSEFVGREIVKCINMAKDGIHAVLVVFSVRTRFSQEEEAALRSLQTLFG 121

Query: 121 KNCFDYMIVVFSGRDELEANDETLEDYLGRECPKPLKEILHLFDNRCVLFDNKTKDAAKR 180
               DYMIVVF+G DELE NDETLEDYLGRECP+PLKE+L L +NR VLFDNKTKD  KR
Sbjct: 122 SKILDYMIVVFTGGDELEDNDETLEDYLGRECPQPLKEVLKLCENRRVLFDNKTKDLFKR 181

Query: 181 TEQIGKLRSL 190
            EQ+ +L SL
Sbjct: 182 AEQMQELLSL 191

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356526433|ref|XP_003531822.1| PREDICTED: protein AIG1-like [Glycine max]

 Score =  277 bits (708), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 138/198 (69%), Positives = 155/198 (78%), Gaps = 13/198 (6%)

Query: 6   IDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVL 65
           IDDD ELTS SN VRTVVLVG TGNGKSATGN+ILGR+AFKSRASSS V+++CE+  T L
Sbjct: 20  IDDDWELTSSSNEVRTVVLVGRTGNGKSATGNTILGRKAFKSRASSSAVSTSCELKTTEL 79

Query: 66  KDGQVVNVIDTPGLFDFSAGSEF-------------DEIHAALVVFSVRSRFSQEEEATL 112
            +GQ+VNVIDTPGLFD SAGSEF             D IHA +VVFSVR+RF++EEE  L
Sbjct: 80  NNGQIVNVIDTPGLFDLSAGSEFVGKEIVKCIDLAKDGIHAVIVVFSVRTRFTEEEETAL 139

Query: 113 HSLQTLFGKNCFDYMIVVFSGRDELEANDETLEDYLGRECPKPLKEILHLFDNRCVLFDN 172
            SLQTLFG    DYMIVVF+G DELE NDETLEDYLGRECP+PLKEIL L +NRCVLFDN
Sbjct: 140 RSLQTLFGSKIVDYMIVVFTGGDELEENDETLEDYLGRECPEPLKEILVLCENRCVLFDN 199

Query: 173 KTKDAAKRTEQIGKLRSL 190
           KTKD  KR  Q+ +L S 
Sbjct: 200 KTKDEGKRFGQVQQLLSF 217

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363814318|ref|NP_001242800.1| uncharacterized protein LOC100807910 [Glycine max] gi|255639255|gb|ACU19926.1| unknown [Glycine max]

 Score =  276 bits (706), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 139/203 (68%), Positives = 154/203 (75%), Gaps = 13/203 (6%)

Query: 1   MGGSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM 60
           MGGS I DD ELTS SN  RTVVLVG TGNGKSATGN+ILGR+ FKSRASSS V+++CE+
Sbjct: 1   MGGSSIGDDWELTSSSNEGRTVVLVGRTGNGKSATGNTILGRKVFKSRASSSAVSTSCEL 60

Query: 61  HRTVLKDGQVVNVIDTPGLFDFSAGSEF-------------DEIHAALVVFSVRSRFSQE 107
             T L DGQ+VNVIDTPGLFD S GSEF             D IHA +VVFSVR+RF++E
Sbjct: 61  QTTELNDGQIVNVIDTPGLFDLSVGSEFVGKEIVKCIDLAKDGIHAVIVVFSVRTRFTEE 120

Query: 108 EEATLHSLQTLFGKNCFDYMIVVFSGRDELEANDETLEDYLGRECPKPLKEILHLFDNRC 167
           EE  L SLQTLFG    DYMIVVF+G DELE N ETLEDYLGRECP+PLKEIL L DNRC
Sbjct: 121 EETALRSLQTLFGSKIVDYMIVVFTGGDELEENAETLEDYLGRECPEPLKEILVLCDNRC 180

Query: 168 VLFDNKTKDAAKRTEQIGKLRSL 190
           VLFDNKTKD  KR  Q+ +L S 
Sbjct: 181 VLFDNKTKDEGKRFGQVQQLLSF 203

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357470421|ref|XP_003605495.1| AIG1 [Medicago truncatula] gi|355506550|gb|AES87692.1| AIG1 [Medicago truncatula]

 Score =  255 bits (651), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 137/259 (52%), Positives = 173/259 (66%), Gaps = 29/259 (11%)

Query: 1   MGGSRI--DDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTC 58
           MGGS +   DD E  S  N V+T+VLVG TGNGKSATGNSILG++ F SRASSSG+T++C
Sbjct: 1   MGGSSVLSVDDWEFASSPNDVKTLVLVGRTGNGKSATGNSILGKKVFNSRASSSGITTSC 60

Query: 59  EMHRTVLKDGQVVNVIDTPGLFDFSAGSEF-------------DEIHAALVVFSVRSRFS 105
           EM  + + DGQ VNVID+PGLFDFS G E              D IHA +VVFSVR+RF+
Sbjct: 61  EMQTSEMNDGQTVNVIDSPGLFDFSVGIELLGKEIIKCIDLAKDGIHAVIVVFSVRTRFT 120

Query: 106 QEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEANDETLEDYLGRECPKPLKEILHLFDN 165
           +EEE  L ++Q LFG    D+MIVVF+G DELE NDETL+DYLGR+CP+PLK IL L  N
Sbjct: 121 EEEENALRNVQKLFGSKIVDHMIVVFTGGDELEENDETLDDYLGRDCPEPLKAILALCGN 180

Query: 166 RCVLFDNKTKDAAKRTEQIGKLRSLQLAREHAARLKVEVTAKSTQMKSDDKIHKLRE--- 222
           RCVLFDNKTKD  K+TEQ+ +L S          + + V+    Q   D+   +L++   
Sbjct: 181 RCVLFDNKTKDEKKQTEQVQQLLSF---------VNMVVSQNGGQPYRDELFKELKKKGQ 231

Query: 223 -DLERAQRENEGLHKGVEI 240
            +LE+ QRE + + KG  I
Sbjct: 232 MELEKQQREADSM-KGYSI 249

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388500386|gb|AFK38259.1| unknown [Lotus japonicus]

 Score =  255 bits (651), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 130/203 (64%), Positives = 153/203 (75%), Gaps = 14/203 (6%)

Query: 1   MGGSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM 60
           MGG+  D+D ELTS +N VRTVV VG TGNGKSATGNSILG++ FKSRASS GVTS+CE 
Sbjct: 1   MGGNSFDEDWELTSSANEVRTVVSVGRTGNGKSATGNSILGKKVFKSRASSVGVTSSCES 60

Query: 61  HRTVLKDGQVVNVIDTPGLFDFSAGSEF-------------DEIHAALVVFSVRSRFSQE 107
           H T+  DGQ VNVIDTPGLFD SAGS+F             D IHA +VVFSVR+RFSQE
Sbjct: 61  H-TIELDGQTVNVIDTPGLFDISAGSDFVGKEIVNCINLAKDGIHAIIVVFSVRTRFSQE 119

Query: 108 EEATLHSLQTLFGKNCFDYMIVVFSGRDELEANDETLEDYLGRECPKPLKEILHLFDNRC 167
           E   L SLQTLFG   +DY +VVF+G DELE  D+TLEDYLG +CP+PLK++L L +NR 
Sbjct: 120 EATALRSLQTLFGDKIYDYTVVVFTGGDELEEEDQTLEDYLGCDCPEPLKDLLSLCENRR 179

Query: 168 VLFDNKTKDAAKRTEQIGKLRSL 190
           +LFDNKTKD  KR+EQ+ +L S 
Sbjct: 180 LLFDNKTKDERKRSEQVQQLFSF 202

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147836179|emb|CAN68778.1| hypothetical protein VITISV_037325 [Vitis vinifera]

 Score =  254 bits (650), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 124/171 (72%), Positives = 141/171 (82%), Gaps = 13/171 (7%)

Query: 1   MGGSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM 60
           MGGS IDD+ E T+PS+GVRT+VLVG TGNGKSATGNSILGR++FKSRASSSGVTSTCE+
Sbjct: 1   MGGSSIDDEWEFTAPSSGVRTLVLVGRTGNGKSATGNSILGRKSFKSRASSSGVTSTCEL 60

Query: 61  HRTVLKDGQVVNVIDTPGLFDFSAGSEF-------------DEIHAALVVFSVRSRFSQE 107
            RT+L+DGQ+VNVIDTPGLFD SA S+F             D +HA LVVFSVR+RFS+E
Sbjct: 61  QRTILRDGQIVNVIDTPGLFDLSAESDFVGKEIVKCIDLAKDGVHAVLVVFSVRTRFSKE 120

Query: 108 EEATLHSLQTLFGKNCFDYMIVVFSGRDELEANDETLEDYLGRECPKPLKE 158
           EEA LHSLQTLFG    DYMIVVF+G DELE NDE LEDYLGRECP+PLK+
Sbjct: 121 EEAALHSLQTLFGSKIIDYMIVVFTGGDELEDNDEXLEDYLGRECPEPLKK 171

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	240
TAIR|locus:2009041	342	AT1G33970 [Arabidopsis thalian	0.879	0.616	0.537	4.8e-55
TAIR|locus:2203802	334	AT1G33890 [Arabidopsis thalian	0.75	0.538	0.492	1.6e-47
TAIR|locus:2203817	311	AT1G33950 [Arabidopsis thalian	0.875	0.675	0.461	2e-47
TAIR|locus:2203797	326	AT1G33900 [Arabidopsis thalian	0.941	0.693	0.436	1.6e-45
TAIR|locus:2203807	353	AIG1 "AVRRPT2-INDUCED GENE 1"	0.912	0.620	0.457	8.1e-44
TAIR|locus:2203832	336	AT1G33930 [Arabidopsis thalian	0.912	0.651	0.427	8.4e-42
TAIR|locus:2039528	463	PP2-A3 "phloem protein 2-A3" [	0.858	0.444	0.435	8.4e-42
TAIR|locus:2140548	335	AT4G09930 [Arabidopsis thalian	0.754	0.540	0.436	2.5e-41
TAIR|locus:2140558	394	AT4G09940 [Arabidopsis thalian	0.933	0.568	0.408	5.5e-38
TAIR|locus:2203827	252	AT1G33870 [Arabidopsis thalian	0.595	0.567	0.455	2.4e-35

TAIR|locus:2009041 AT1G33970 [Arabidopsis thaliana (taxid:3702)]

 Score = 568 (205.0 bits), Expect = 4.8e-55, P = 4.8e-55
 Identities = 128/238 (53%), Positives = 156/238 (65%)

Query:     1 MGGSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM 60
             MGG  ++DD E  S SN  RT+VLVG TGNGKSATGNSILGR+AF+SRA + GVTSTCE 
Sbjct:     6 MGGDMMEDDWEFASSSNPKRTLVLVGRTGNGKSATGNSILGRKAFRSRARTVGVTSTCES 65

Query:    61 HRTVLKDGQVVNVIDTPGLFDFSAGSEF-------------DEIHAALVVFSVRSRFSQE 107
              R V +DG ++NV+DTPGLFD S  ++F             D IHA L+VFSVR R ++E
Sbjct:    66 QRVVQEDGDIINVVDTPGLFDLSTAADFIGKEIVRCISLAEDGIHAILLVFSVR-RLAEE 124

Query:   108 EEATLHSLQTLFGKNCFDYMIVVFSGRDELEANDETLEDYLGRECPKPLKEILHLFDNRC 167
             E+  L  LQ LFG    DYMIVVF+G DELE N+ETLE+YL   CP+ LKEIL + DNR 
Sbjct:   125 EQTVLSFLQALFGSKIADYMIVVFTGGDELEENEETLEEYLADYCPEFLKEILGICDNRL 184

Query:   168 VLFDNKTKDAAKRTEQIGKLRSLQLAREHAARLKVEVTAKSTQMK--SDDKIHKLRED 223
             VLF+NKT D  K+ EQ+ KL SL           VE   K    K  SD+  H+L+E+
Sbjct:   185 VLFNNKTTDKVKKAEQVQKLLSL-----------VESVVKQNNGKPYSDELFHELQEE 231

GO:0005525 "GTP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0009617 "response to bacterium" evidence=ISS

GO:0006897 "endocytosis" evidence=RCA

TAIR|locus:2203802 AT1G33890 [Arabidopsis thaliana (taxid:3702)]

 Score = 452 (164.2 bits), Expect = 1.6e-47, Sum P(2) = 1.6e-47
 Identities = 95/193 (49%), Positives = 127/193 (65%)

Query:    11 ELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQV 70
             E  S    V+ +VLVG TGNGKSATGNS++G+  F S A ++GVT TC+ ++ V   G  
Sbjct:     5 EQASAYKAVKNIVLVGRTGNGKSATGNSLIGKDVFVSEAKATGVTKTCQTYKAVTPGGSR 64

Query:    71 VNVIDTPGLFDFSAGSEF--DEI-----------HAALVVFSVRSRFSQEEEATLHSLQT 117
             +NVIDTPGLFD S  +EF   EI           H  ++V SVR+R +QEEE TL +LQ 
Sbjct:    65 INVIDTPGLFDLSVSAEFISKEIINCLRLAEGGLHVVVLVLSVRTRITQEEENTLSTLQV 124

Query:   118 LFGKNCFDYMIVVFSGRDELEANDETLEDYLGRECPKPLKEILHLFDNRCVLFDNKTKDA 177
             LFG    DY+IV+F+G DELEAN++TL+DY  + CP  LK +L L D+R V+F+N TKD 
Sbjct:   125 LFGNEILDYLIVLFTGGDELEANNQTLDDYFHQGCPYFLKTVLGLCDDRKVMFNNMTKDK 184

Query:   178 AKRTEQIGKLRSL 190
              K+ EQ+ +  +L
Sbjct:   185 HKKVEQVQQFLAL 197

GO:0005525 "GTP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0009617 "response to bacterium" evidence=ISS

GO:0006897 "endocytosis" evidence=RCA

TAIR|locus:2203817 AT1G33950 [Arabidopsis thaliana (taxid:3702)]

 Score = 496 (179.7 bits), Expect = 2.0e-47, P = 2.0e-47
 Identities = 107/232 (46%), Positives = 144/232 (62%)

Query:    16 SNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVID 75
             S     +VLVG TGNGKSATGNS++G++ F S+A +SGVT  C+ H  V KDG  +NVID
Sbjct:    13 SKQAENIVLVGRTGNGKSATGNSLIGKKVFASKAHASGVTMKCQTHGVVTKDGHKINVID 72

Query:    76 TPGLFDFSAGSEFDE-------------IHAALVVFSVRSRFSQEEEATLHSLQTLFGKN 122
             TPGLFD S  +E+               IHA L+V S R+R +QEEE TL +LQ LFG  
Sbjct:    73 TPGLFDLSVSAEYISKEIVRCLTLAEGGIHAVLLVLSARTRITQEEENTLRTLQALFGSQ 132

Query:   123 CFDYMIVVFSGRDELEANDETLEDYLGRECPKPLKEILHLFDNRCVLFDNKTKDAAKRTE 182
               DY++VVF+G D LE   ETLEDYLGR+CP  +KE++ +  NR V+ DNKT D  K+ E
Sbjct:   133 ILDYVVVVFTGGDVLEECKETLEDYLGRDCPTFIKEVMRMSSNRKVVIDNKTHDEGKKAE 192

Query:   183 QIGKLRSLQLAREHAARLKVEVTAKSTQMKSDDKIHKLREDLERAQRENEGL 234
             Q+ KL SL    +   R      +K  +  +DD  H ++E+ E+ ++ +E L
Sbjct:   193 QVHKLLSLV---DDIRR------SKCGEAYTDDTYHMIKEESEKLRKHHEEL 235

GO:0005525 "GTP binding" evidence=IEA

GO:0009617 "response to bacterium" evidence=ISS

TAIR|locus:2203797 AT1G33900 [Arabidopsis thaliana (taxid:3702)]

 Score = 478 (173.3 bits), Expect = 1.6e-45, P = 1.6e-45
 Identities = 107/245 (43%), Positives = 147/245 (60%)

Query:     1 MGGSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM 60
             M G     D  L S S  ++ +VLVG TGNGKSATGNS++G++ F+S   ++GVT  CE 
Sbjct:     1 MAGLEDTTDLRLPSASEPIKNIVLVGRTGNGKSATGNSLIGKQVFRSETRATGVTMKCET 60

Query:    61 HRTVLKDGQVVNVIDTPGLFDFSAGSEF-------------DEIHAALVVFSVRSRFSQE 107
                V   G  +NVIDTPGLFD S  +E+             D +HA ++V SVR+R SQE
Sbjct:    61 CVAVTPCGTGINVIDTPGLFDLSVSAEYLSQEIINCLVLAEDGLHAVVLVLSVRTRISQE 120

Query:   108 EEATLHSLQTLFGKNCFDYMIVVFSGRDELEANDETLEDYLGRECPKPLKEILHLFDNRC 167
             EEATL++LQ +FG    DY++V+F+G DELEAN+ TL+DYL + CP+ LK +L L   R 
Sbjct:   121 EEATLNTLQVIFGSQIIDYLVVLFTGGDELEANNMTLDDYLSKGCPEFLKTVLRLCGGRR 180

Query:   168 VLFDNKTKDAAKRTEQIGKLRSLQLAREHAARLKVEVTAKSTQMKSDDKIHKLREDLERA 227
             +LFDN+T D  K+ +Q+ +L    LA  H A ++   +      +   KI K  E L   
Sbjct:   181 ILFDNRTTDEGKKVKQVQEL----LA--HVAAIEKSTSGIPFTDEMHRKIQKEAETLREQ 234

Query:   228 QRENE 232
             Q+E E
Sbjct:   235 QKEVE 239

GO:0005525 "GTP binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009617 "response to bacterium" evidence=ISS

GO:0006897 "endocytosis" evidence=RCA

TAIR|locus:2203807 AIG1 "AVRRPT2-INDUCED GENE 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 462 (167.7 bits), Expect = 8.1e-44, P = 8.1e-44
 Identities = 112/245 (45%), Positives = 145/245 (59%)

Query:     8 DDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKD 67
             D+   + P + V  +VLVG TGNGKSATGNSI+  + FKS+  SSGVT  C   + V  +
Sbjct:    32 DEFSASQP-HPVENIVLVGRTGNGKSATGNSIVRSKVFKSKTKSSGVTMECHAVKAVTPE 90

Query:    68 GQVVNVIDTPGLFDFSAGSEF--DEI-----------HAALVVFSVRSRFSQEEEATLHS 114
             G ++NVIDTPGLFD S  +EF   EI           HA L+V SVR+R SQEEE  L +
Sbjct:    91 GPILNVIDTPGLFDLSVSAEFIGKEIVKCLTLADGGLHAVLLVLSVRTRISQEEEMVLST 150

Query:   115 LQTLFGKNCFDYMIVVFSGRDELEANDETLEDYLGRECPKPLKEILHLFDNRCVLFDNKT 174
             LQ LFG    DY+IVVF+G D LE +  TLEDYLG   P  LK +L L   R +LFDNKT
Sbjct:   151 LQVLFGSKIVDYLIVVFTGGDVLEDDGMTLEDYLGDNMPDFLKRVLILCGQRMILFDNKT 210

Query:   175 KDAAKRTEQIGKLRSL-QLAREHAARLKVEVTAKSTQMKSDDKIHKLREDLERAQRENEG 233
             KD  K+T+Q+ +L  L  L R+    +            +D+  H ++E+ ER ++E E 
Sbjct:   211 KDDEKKTKQVHELLKLIDLVRKQNNNIPY----------TDEMYHMIKEENERHKKEQEE 260

Query:   234 LH-KG 237
             L  KG
Sbjct:   261 LESKG 265

GO:0005525 "GTP binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009617 "response to bacterium" evidence=IEP;ISS

GO:0006897 "endocytosis" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

TAIR|locus:2203832 AT1G33930 [Arabidopsis thaliana (taxid:3702)]

 Score = 443 (161.0 bits), Expect = 8.4e-42, P = 8.4e-42
 Identities = 104/243 (42%), Positives = 145/243 (59%)

Query:     8 DDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKD 67
             D  EL S S  V+ VVLVG TGNGKSATGNSI+GR+ F+S+  + GVT+ C+  R V  D
Sbjct:    24 DRWELPSASEPVKNVVLVGRTGNGKSATGNSIIGRKVFESKYQAVGVTTRCKTFRAVTPD 83

Query:    68 GQVVNVIDTPGLFDFSAGSEF-------------DEIHAALVVFSVRSRFSQEEEATLHS 114
             G ++NVIDTPGLFD +  +EF             + +HA ++V S+ +R SQEEE  L +
Sbjct:    84 GPIINVIDTPGLFDLAVSAEFISKEIVNCLILAREGLHAVVLVLSLSTRISQEEENALCT 143

Query:   115 LQTLFGKNCFDYMIVVFSGRDELEANDETLEDYLGRECPKPLKEILHLFDNRCVLFDNKT 174
             LQ LFG    DY+IVVF+  D LE  + TLEDYL   CP+ LK +L L   R V+FDN+T
Sbjct:   144 LQMLFGGKIVDYLIVVFTCGDMLEDRNMTLEDYLSNGCPEFLKNVLRLCGGRRVVFDNRT 203

Query:   175 KDAAKRTEQIGKLRSLQLAREHAARLKVEVTAKSTQMKSDDKIHK-LREDLERAQRENEG 233
             KD   + +Q+ +L    L   H A ++ E           D +H+ ++E+  R +RE + 
Sbjct:   204 KDEGVKAKQVQQL----LV--HVAAIEKETGGNPFT----DTMHRRIQEEAARVKREEKE 253

Query:   234 LHK 236
             + +
Sbjct:   254 IEE 256

GO:0005525 "GTP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0009617 "response to bacterium" evidence=ISS

TAIR|locus:2039528 PP2-A3 "phloem protein 2-A3" [Arabidopsis thaliana (taxid:3702)]

 Score = 443 (161.0 bits), Expect = 8.4e-42, P = 8.4e-42
 Identities = 101/232 (43%), Positives = 143/232 (61%)

Query:    16 SNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVID 75
             S  ++ +VLVG TGNGKS+TGN++LG + FKS+  + GVT  CEM+R  ++DG ++NVID
Sbjct:     2 SEPIKNIVLVGRTGNGKSSTGNTLLGTKQFKSKNQAKGVTMICEMYRAAIQDGPIINVID 61

Query:    76 TPGLFD-FSAGSEFDE------------IHAALVVFSVRSRFSQEEEATLHSLQTLFGKN 122
             TPGL D F  G +               IHA L+V S R R S+EEE+T+++LQ +FG  
Sbjct:    62 TPGLCDSFVPGDDISNEIINCLTMAEEGIHAVLLVLSARGRISKEEESTVNTLQCIFGSQ 121

Query:   123 CFDYMIVVFSGRDELEANDETLEDYLGRECPKPLKEILHLFDNRCVLFDNKTKDAAKRTE 182
               DY IVVF+G D+LE +D+TL+DY    CP+ L ++L L   R VLFDNK+KD  K+ E
Sbjct:   122 ILDYCIVVFTGGDDLEEDDQTLDDYFRAGCPEFLTKVLRLCGGRKVLFDNKSKDEKKKVE 181

Query:   183 QIGKLRSLQLAREHAARLKVEVTAKSTQ-MKSDDKIH-KLREDLERAQRENE 232
             Q+ +L    LAR       VE   + T  +    ++H K++E+ +   RE E
Sbjct:   182 QVKQL----LAR-------VENVGEQTGGIPYTYQLHRKIKEENDERLREEE 222

GO:0005525 "GTP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0009617 "response to bacterium" evidence=ISS

GO:0030246 "carbohydrate binding" evidence=ISS

GO:0006826 "iron ion transport" evidence=RCA

GO:0006897 "endocytosis" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2140548 AT4G09930 [Arabidopsis thaliana (taxid:3702)]

 Score = 369 (135.0 bits), Expect = 2.5e-41, Sum P(2) = 2.5e-41
 Identities = 86/197 (43%), Positives = 120/197 (60%)

Query:     8 DDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKD 67
             D CE   P    RT+VL+G +GNGKSATGNSIL   AFKS+  ++ VT  CE+  T   +
Sbjct:    15 DACESDLPMKPSRTLVLIGCSGNGKSATGNSILRSEAFKSKGQAAAVTKECELKSTKRPN 74

Query:    68 GQVVNVIDTPGLFDFSAGSEF-------------DEIHAALVVFSVRSRFSQEEEATLHS 114
             GQ++NVIDTPGLF     +E              + I A L+VFS+RSR ++EE++    
Sbjct:    75 GQIINVIDTPGLFSLFPSNESTIREILKCSHLAKEGIDAVLMVFSLRSRLTEEEKSVPFV 134

Query:   115 LQTLFGKNCFDYMIVVFSGRDELEANDETLEDYLGRECPKPLKEILHLFDNRCVLFDNKT 174
             L+TLFG + FDY+IVVF+  D L  ++ T+ +YL  E     KEIL   +NR VLF+N+ 
Sbjct:   135 LKTLFGDSIFDYLIVVFTNEDSLIDDNVTINEYL--EGSPDFKEILAACNNRMVLFENRL 192

Query:   175 KDAA-KRTEQIGKLRSL 190
             + +  K+ +Q+ KL  L
Sbjct:   193 RTSKRKKAKQVQKLLDL 209

GO:0005525 "GTP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0009617 "response to bacterium" evidence=ISS

GO:0006897 "endocytosis" evidence=RCA

TAIR|locus:2140558 AT4G09940 [Arabidopsis thaliana (taxid:3702)]

 Score = 407 (148.3 bits), Expect = 5.5e-38, P = 5.5e-38
 Identities = 103/252 (40%), Positives = 152/252 (60%)

Query:     3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHR 62
             GS ++  C+L       RT++LVG +GNGKSATGNSILGR+AFKS+  +SGVT+ CE+  
Sbjct:    31 GSGLEVTCDLRLEHKPARTLLLVGRSGNGKSATGNSILGRKAFKSKGRASGVTTACELQS 90

Query:    63 TVLKDGQVVNVIDTPGLFDFSAGSEF-------------DEIHAALVVFSVRSRFSQEEE 109
             + L +GQ++NVIDTPGLF  S  +EF             + I A L+VFS+++R ++EE+
Sbjct:    91 STLPNGQIINVIDTPGLFSLSPSTEFTCREILRCFSLTKEGIDAVLLVFSLKNRLTEEEK 150

Query:   110 ATLHSLQTLFGKNCFDYMIVVFSGRDELEANDETLEDYLGRECPKPLKEILHLFDNRCVL 169
             + L +L+ LFG    DYMIVVF+  D LE + +T E+YL  + P   KEIL   ++R VL
Sbjct:   151 SALFALKILFGSKIVDYMIVVFTNEDSLEDDGDTFEEYL-EDSPD-FKEILEPCNDRKVL 208

Query:   170 FDNKTK-DAAKRTEQIGKLRSLQLAREHAARLKVEVTAKSTQMKSDDKIHKLREDLERAQ 228
             F N++    +++ +Q+ +L +     E  ARL      KS      D  H++RE+    Q
Sbjct:   209 FRNRSNAPVSQKAKQVQELLNYV---EEIARLN----GKSYMA---DLSHEIRENETAFQ 258

Query:   229 -RENEGLH-KGV 238
              ++ E L  KG+
Sbjct:   259 IKQQEILEMKGL 270

GO:0005525 "GTP binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009617 "response to bacterium" evidence=ISS

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0006897 "endocytosis" evidence=RCA

TAIR|locus:2203827 AT1G33870 [Arabidopsis thaliana (taxid:3702)]

 Score = 331 (121.6 bits), Expect = 2.4e-35, Sum P(2) = 2.4e-35
 Identities = 71/156 (45%), Positives = 95/156 (60%)

Query:    45 FKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEI----------- 91
             F S   + GVT  C M+RT +KDG ++NVIDTPGLFD S  + +   EI           
Sbjct:     2 FTSELQAGGVTMECVMYRTAIKDGPIINVIDTPGLFDSSVSANYITTEILKCLTMAEGGI 61

Query:    92 HAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEANDETLEDYLGRE 151
             HA + V S  +R +QEEE+TL +LQ +F     DY IVVF+G D+LEAN++TL+DY    
Sbjct:    62 HAFMFVLSAGNRITQEEESTLDTLQLIFDSKILDYFIVVFTGGDKLEANEQTLDDYFSEG 121

Query:   152 CPKPLKEILHLFDNRCVLFDNKTKDAAKRTEQIGKL 187
             CPK L  +L L   R V+F+N TKD  K  +Q+ +L
Sbjct:   122 CPKFLTGVLRLCGGRKVVFNNMTKDKVKNAKQVKQL 157

GO:0005525 "GTP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0009617 "response to bacterium" evidence=ISS

GO:0045036 "protein targeting to chloroplast" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	240
pfam04548	211	pfam04548, AIG1, AIG1 family	2e-66
cd01852	201	cd01852, AIG1, AvrRpt2-Induced Gene 1 (AIG1)	1e-61
cd01853	248	cd01853, Toc34_like, Translocon at the Outer-envel	1e-09
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	9e-09
cd09912	180	cd09912, DLP_2, Dynamin-like protein including dyn	1e-06
TIGR00993	763	TIGR00993, 3a0901s04IAP86, chloroplast protein imp	1e-06
pfam01926	117	pfam01926, MMR_HSR1, 50S ribosome-binding GTPase	6e-06
cd01854	211	cd01854, YjeQ_EngC, Ribosomal interacting GTPase Y	3e-05
TIGR00991	313	TIGR00991, 3a0901s02IAP34, GTP-binding protein (Ch	2e-04
cd00880	161	cd00880, Era_like, E	6e-04
PRK01889	356	PRK01889, PRK01889, GTPase RsgA; Reviewed	9e-04
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	0.001
COG1160	444	COG1160, COG1160, Predicted GTPases [General funct	0.002
COG3596	296	COG3596, COG3596, Predicted GTPase [General functi	0.002

>gnl|CDD|218141 pfam04548, AIG1, AIG1 family

 Score =  204 bits (521), Expect = 2e-66
 Identities = 88/184 (47%), Positives = 118/184 (64%), Gaps = 18/184 (9%)

Query: 20  RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGL 79
             +VLVG TGNGKSATGNSILGR+AF+S+  + GVT TC++      DG+++NVIDTPGL
Sbjct: 1   LRIVLVGKTGNGKSATGNSILGRKAFESKLRAQGVTKTCQLVSRTW-DGRIINVIDTPGL 59

Query: 80  FDFSAGSEF-------------DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDY 126
           FD S  ++F                HA L+V S+  RF++EEE  L +LQ LFG    DY
Sbjct: 60  FDLSVSNDFISKEIIRCLLLAEPGPHAVLLVLSLG-RFTEEEEQALRTLQELFGSKILDY 118

Query: 127 MIVVFSGRDELEANDETLEDYLGRECPKPLKEILHLFDNRCVLFDNKTKDAAKRTEQIGK 186
           MIVVF+ +D+LE +   L+DYL   CP+ LKE+L     R VLF+NK  D  ++ EQ+ +
Sbjct: 119 MIVVFTRKDDLEDDS--LDDYLSDGCPEFLKEVLRECGGRYVLFNNK-ADGEEKEEQVQQ 175

Query: 187 LRSL 190
           L +L
Sbjct: 176 LLAL 179

Arabidopsis protein AIG1 appears to be involved in plant resistance to bacteria. Length = 211

>gnl|CDD|206651 cd01852, AIG1, AvrRpt2-Induced Gene 1 (AIG1)

 Score =  191 bits (488), Expect = 1e-61
 Identities = 81/181 (44%), Positives = 107/181 (59%), Gaps = 19/181 (10%)

Query: 20  RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGL 79
             +VLVG TGNGKSATGN+ILGR+ F+S+ S+SGVT TC+    V  DG+ VNVIDTPGL
Sbjct: 1   LRLVLVGKTGNGKSATGNTILGRKVFESKLSASGVTKTCQKESAVW-DGRRVNVIDTPGL 59

Query: 80  FDFSAGSEFDE-------------IHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDY 126
           FD S   E                 HA L+V  +  RF++EEE  +  LQ LFG+   D+
Sbjct: 60  FDTSVSPEQLSKEIIRCLSLSAPGPHAFLLVVPLG-RFTEEEEQAVEELQELFGEKVLDH 118

Query: 127 MIVVFSGRDELEANDETLEDYLGRECPKPLKEILHLFDNRCVLFDNKTKDAAKRTEQIGK 186
            IV+F+  D+LE    +LEDYL   C   LK +L     R V F+NK K   ++ +Q+ +
Sbjct: 119 TIVLFTRGDDLE--GGSLEDYLEDSCE-ALKRLLEKCGGRYVAFNNKAKG-REQEQQVKE 174

Query: 187 L 187
           L
Sbjct: 175 L 175

This group represents Arabidoposis protein AIG1 (avrRpt2-induced gene 1) that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins). Length = 201

>gnl|CDD|206652 cd01853, Toc34_like, Translocon at the Outer-envelope membrane of Chloroplasts 34-like (Toc34-like)

 Score = 56.6 bits (137), Expect = 1e-09
 Identities = 28/66 (42%), Positives = 37/66 (56%), Gaps = 2/66 (3%)

Query: 21 TVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLF 80
          T++++G TG GKS+T NSI G R     A  S      E+ RTV  DG  +N+IDTPGL 
Sbjct: 33 TILVLGKTGVGKSSTINSIFGERKVSVSAFQSETLRPREVSRTV--DGFKLNIIDTPGLL 90

Query: 81 DFSAGS 86
          +     
Sbjct: 91 ESQDQR 96

The Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts) family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon. Length = 248

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score = 52.8 bits (127), Expect = 9e-09
 Identities = 37/141 (26%), Positives = 58/141 (41%), Gaps = 12/141 (8%)

Query: 23  VLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQV-VNVIDTPGLFD 81
           V+VG  G GKS+  N++LG       +   G T   +++   L  G+V + ++DTPGL +
Sbjct: 1   VVVGRGGVGKSSLLNALLGGE-VGEVSDVPGTTRDPDVYVKELDKGKVKLVLVDTPGLDE 59

Query: 82  FSAGSE-------FDEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGR 134
           F                   L+V     R S EE+A L  L+ L  +     +I+V +  
Sbjct: 60  FGGLGREELARLLLRGADLILLVVDSTDRES-EEDAKLLILRRLRKEGI--PIILVGNKI 116

Query: 135 DELEANDETLEDYLGRECPKP 155
           D LE  +      L       
Sbjct: 117 DLLEEREVEELLRLEELAKIL 137

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|206739 cd09912, DLP_2, Dynamin-like protein including dynamins, mitofusins, and guanylate-binding proteins

 Score = 47.2 bits (113), Expect = 1e-06
 Identities = 29/128 (22%), Positives = 46/128 (35%), Gaps = 14/128 (10%)

Query: 21  TVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLF 80
            + +VG    GKS   N++LG     +    +  T+   + R  L  G  V ++DTPGL 
Sbjct: 2   LLAVVGEFSAGKSTLLNALLGEEVLPT--GVTPTTAVITVLRYGLLKG--VVLVDTPGLN 57

Query: 81  DFSAG------SEFDEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGR 134
                      S      A + V S     ++ E   L  +    GK     +  V +  
Sbjct: 58  STIEHHTEITESFLPRADAVIFVLSADQPLTESEREFLKEILKWSGKK----IFFVLNKI 113

Query: 135 DELEANDE 142
           D L   + 
Sbjct: 114 DLLSEEEL 121

The dynamin family of large mechanochemical GTPases includes the classical dynamins and dynamin-like proteins (DLPs) that are found throughout the Eukarya. This family also includes bacterial DLPs. These proteins catalyze membrane fission during clathrin-mediated endocytosis. Dynamin consists of five domains; an N-terminal G domain that binds and hydrolyzes GTP, a middle domain (MD) involved in self-assembly and oligomerization, a pleckstrin homology (PH) domain responsible for interactions with the plasma membrane, GED, which is also involved in self-assembly, and a proline arginine rich domain (PRD) that interacts with SH3 domains on accessory proteins. To date, three vertebrate dynamin genes have been identified; dynamin 1, which is brain specific, mediates uptake of synaptic vesicles in presynaptic terminals; dynamin-2 is expressed ubiquitously and similarly participates in membrane fission; mutations in the MD, PH and GED domains of dynamin 2 have been linked to human diseases such as Charcot-Marie-Tooth peripheral neuropathy and rare forms of centronuclear myopathy. Dynamin 3 participates in megakaryocyte progenitor amplification, and is also involved in cytoplasmic enlargement and the formation of the demarcation membrane system. This family also includes mitofusins (MFN1 and MFN2 in mammals) that are involved in mitochondrial fusion. Dynamin oligomerizes into helical structures around the neck of budding vesicles in a GTP hydrolysis-dependent manner. Length = 180

>gnl|CDD|233224 TIGR00993, 3a0901s04IAP86, chloroplast protein import component Toc86/159, G and M domains

 Score = 48.4 bits (115), Expect = 1e-06
 Identities = 30/81 (37%), Positives = 42/81 (51%), Gaps = 6/81 (7%)

Query: 21  TVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLF 80
            ++++G +G GKSAT NSI G   F + A   G TS  E+   V   G  + VIDTPGL 
Sbjct: 120 NILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLV--QGVKIRVIDTPGL- 176

Query: 81  DFSAGSEFDEIHAALVVFSVR 101
                S  D+     ++ SV+
Sbjct: 177 ---KSSASDQSKNEKILSSVK 194

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M [Transport and binding proteins, Amino acids, peptides and amines]. Length = 763

>gnl|CDD|216791 pfam01926, MMR_HSR1, 50S ribosome-binding GTPase

 Score = 43.8 bits (104), Expect = 6e-06
 Identities = 30/140 (21%), Positives = 56/140 (40%), Gaps = 25/140 (17%)

Query: 21  TVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLF 80
            V LVG    GKS   N++ G +     +   G T   +    VL  G+ + ++DTPGL 
Sbjct: 1   RVALVGRPNVGKSTLINALTGAKVAIV-SDYPGTTR--DPILGVLGLGRQIILVDTPGLI 57

Query: 81  DFSAGSEFDEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEAN 140
           + ++  +  E                     L +++        D +++V    + L  +
Sbjct: 58  EGASEGKGVEGF----------------NRFLEAIREA------DLILLVVDASEGLTED 95

Query: 141 DETLEDYLGRECPKPLKEIL 160
           DE + + L +   KP+  +L
Sbjct: 96  DEEILEELEKLPKKPIILVL 115

The full-length GTPase protein is required for the complete activity of the protein of interacting with the 50S ribosome and binding of both adenine and guanine nucleotides, with a preference for guanine nucleotide. Length = 117

>gnl|CDD|206747 cd01854, YjeQ_EngC, Ribosomal interacting GTPase YjeQ/EngC, a circularly permuted subfamily of the Ras GTPases

 Score = 43.2 bits (103), Expect = 3e-05
 Identities = 24/79 (30%), Positives = 32/79 (40%), Gaps = 16/79 (20%)

Query: 20  RTVVLVGHTGNGKSATGNSILGRRAFK----SRASSSGV--TSTCEMHRTVLKDGQVVNV 73
           +T VLVG +G GKS   N++L          S     G   T+  E+    L  G    +
Sbjct: 86  KTSVLVGQSGVGKSTLLNALLPELVLATGEISEKLGRGRHTTTHRELFP--LPGG--GLI 141

Query: 74  IDTPGLFDFSAGSEFDEIH 92
           IDTPG        E   +H
Sbjct: 142 IDTPGF------RELGLLH 154

YjeQ (YloQ in Bacillus subtilis) is a ribosomal small subunit-dependent GTPase; hence also known as RsgA. YjeQ is a late-stage ribosomal biogenesis factor involved in the 30S subunit maturation, and it represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. Length = 211

>gnl|CDD|130064 TIGR00991, 3a0901s02IAP34, GTP-binding protein (Chloroplast Envelope Protein Translocase)

 Score = 41.4 bits (97), Expect = 2e-04
 Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 2/61 (3%)

Query: 21 TVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLF 80
          T++++G  G GKS+T NSI+G R     A  S       + RT  + G  +N+IDTPGL 
Sbjct: 40 TILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRT--RAGFTLNIIDTPGLI 97

Query: 81 D 81
          +
Sbjct: 98 E 98

[Transport and binding proteins, Nucleosides, purines and pyrimidines]. Length = 313

>gnl|CDD|206646 cd00880, Era_like, E

 Score = 38.8 bits (91), Expect = 6e-04
 Identities = 33/128 (25%), Positives = 51/128 (39%), Gaps = 14/128 (10%)

Query: 23  VLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDF 82
            + G    GKS+  N++LG+      +   G T         L     V +IDTPGL + 
Sbjct: 1   AIFGRPNVGKSSLLNALLGQNVGIV-SPIPGTTRDPVRKEWELLPLGPVVLIDTPGLDEE 59

Query: 83  SAGSEFDEI-------HAALVVFSVRSRFSQ-EEEATLHSLQTLFGKNCFDYMIVVFSGR 134
                            A LV+  V S  +  EEEA L  L+   GK     +++V +  
Sbjct: 60  GGLGRERVEEARQVADRADLVLLVVDSDLTPVEEEAKLGLLRER-GKP----VLLVLNKI 114

Query: 135 DELEANDE 142
           D +  ++E
Sbjct: 115 DLVPESEE 122

coli Ras-like protein (Era)-like GTPase. The Era (E. coli Ras-like protein)-like family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngB), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Length = 161

>gnl|CDD|234988 PRK01889, PRK01889, GTPase RsgA; Reviewed

 Score = 39.5 bits (93), Expect = 9e-04
 Identities = 33/94 (35%), Positives = 47/94 (50%), Gaps = 17/94 (18%)

Query: 11  ELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA----SSSG--VTSTCEMHRTV 64
            L +  +G +TV L+G +G GKS   N++LG    K+ A     S G   T+  E+H   
Sbjct: 187 VLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRHTTTHRELHP-- 244

Query: 65  LKDGQVVNVIDTPG-----LFDFSAGSE--FDEI 91
           L  G +  +IDTPG     L+D   G E  F +I
Sbjct: 245 LPSGGL--LIDTPGMRELQLWDAEDGVEETFSDI 276

Length = 356

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score = 38.1 bits (89), Expect = 0.001
 Identities = 25/115 (21%), Positives = 45/115 (39%), Gaps = 6/115 (5%)

Query: 22  VVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQ--VVNVIDTPGL 79
           +V+VG    GKS   N +LG +   +     G T        + +DG+    N++DT G 
Sbjct: 4   IVIVGDPNVGKSTLLNRLLGNKISIT-EYKPGTTRNYVT-TVIEEDGKTYKFNLLDTAGQ 61

Query: 80  FDFSAGSE--FDEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFS 132
            D+ A     +  + ++L VF +       EE      + +         I++  
Sbjct: 62  EDYDAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAESGVPIILVG 116

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

>gnl|CDD|224082 COG1160, COG1160, Predicted GTPases [General function prediction only]

 Score = 38.3 bits (90), Expect = 0.002
 Identities = 44/177 (24%), Positives = 57/177 (32%), Gaps = 49/177 (27%)

Query: 20  RTVVLVGHTGNGKSATGNSILGRRAFKSRASS-SGVT-----STCEMHRTVLKDGQVVNV 73
             V +VG    GKS   N + GRR   +  S   GVT        E        G+   +
Sbjct: 4   PVVAIVGRPNVGKSTLFNRLTGRR--IAIVSDTPGVTRDRIYGDAEWL------GREFIL 55

Query: 74  IDTPGLFDFSAGSEFDEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSG 133
           IDT GL D     E  E+                        Q L      D ++ V  G
Sbjct: 56  IDTGGL-DDGDEDELQELIRE---------------------QALIAIEEADVILFVVDG 93

Query: 134 RDELEANDETLEDYLGRECPKPLKEILHLFDNRCVLFDNKTKDAAKRTEQIGKLRSL 190
           R+ +   DE +   L R   KP            +L  NK  D  K  E   +  SL
Sbjct: 94  REGITPADEEIAKIL-RRSKKP-----------VILVVNKI-DNLKAEELAYEFYSL 137

Length = 444

>gnl|CDD|226124 COG3596, COG3596, Predicted GTPase [General function prediction only]

 Score = 38.2 bits (89), Expect = 0.002
 Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 5/75 (6%)

Query: 22  VVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFD 81
           V+L+G TG GKS+  N++          S  GV +       +  DG+ + + DTPGL D
Sbjct: 42  VLLMGATGAGKSSLINALFQGEV--KEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGD 99

Query: 82  FSAGSEFDEIHAALV 96
              G + D  H  L 
Sbjct: 100 ---GKDKDAEHRQLY 111

Length = 296

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	240
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	99.97
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	99.96
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	99.88
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	99.88
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	99.84
COG5019	373	CDC3 Septin family protein [Cell division and chro	99.79
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.77
COG1159	298	Era GTPase [General function prediction only]	99.76
PRK15494	339	era GTPase Era; Provisional	99.74
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	99.74
COG1160	444	Predicted GTPases [General function prediction onl	99.72
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	99.71
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.71
KOG2655	366	consensus Septin family protein (P-loop GTPase) [C	99.7
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.69
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.69
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.69
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.68
COG1160	444	Predicted GTPases [General function prediction onl	99.68
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.68
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	99.67
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.67
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	99.67
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	99.67
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.67
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	99.66
COG1084	346	Predicted GTPase [General function prediction only	99.66
KOG0084	205	consensus GTPase Rab1/YPT1, small G protein superf	99.65
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.65
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	99.65
PRK00089	292	era GTPase Era; Reviewed	99.65
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	99.65
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.65
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	99.65
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	99.64
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.64
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.64
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	99.64
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	99.64
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	99.64
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	99.64
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	99.63
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.63
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	99.63
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.63
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	99.63
PTZ00369	189	Ras-like protein; Provisional	99.63
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.63
COG0218	200	Predicted GTPase [General function prediction only	99.63
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.63
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.63
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	99.63
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	99.63
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	99.63
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.63
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.63
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	99.63
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	99.62
PRK03003	472	GTP-binding protein Der; Reviewed	99.62
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.62
cd00881	189	GTP_translation_factor GTP translation factor fami	99.62
PRK00093	435	GTP-binding protein Der; Reviewed	99.62
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	99.62
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	99.62
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.62
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	99.62
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	99.62
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	99.62
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	99.62
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	99.62
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	99.62
COG0486	454	ThdF Predicted GTPase [General function prediction	99.62
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	99.61
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	99.61
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	99.61
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	99.61
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.61
PRK12299	335	obgE GTPase CgtA; Reviewed	99.61
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.61
PLN03118	211	Rab family protein; Provisional	99.61
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.61
PRK11058	426	GTPase HflX; Provisional	99.61
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	99.61
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	99.6
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	99.6
PRK00093	435	GTP-binding protein Der; Reviewed	99.6
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	99.6
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	99.6
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	99.6
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.6
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	99.6
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	99.6
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	99.6
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	99.6
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.6
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	99.6
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.6
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.6
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	99.6
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	99.6
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	99.6
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	99.6
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.6
PRK03003	472	GTP-binding protein Der; Reviewed	99.6
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	99.59
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	99.59
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.59
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.58
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	99.58
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	99.58
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	99.58
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	99.58
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	99.58
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	99.58
PRK05306	787	infB translation initiation factor IF-2; Validated	99.58
KOG0080	209	consensus GTPase Rab18, small G protein superfamil	99.58
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	99.58
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	99.58
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	99.58
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	99.58
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	99.58
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.57
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	99.57
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	99.57
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	99.57
PRK12317	425	elongation factor 1-alpha; Reviewed	99.57
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.57
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	99.57
COG3596	296	Predicted GTPase [General function prediction only	99.57
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	99.57
COG0488	530	Uup ATPase components of ABC transporters with dup	99.57
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.57
PRK12298	390	obgE GTPase CgtA; Reviewed	99.57
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.57
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	99.57
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	99.56
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	99.56
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	99.56
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	99.56
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.56
PLN03110	216	Rab GTPase; Provisional	99.56
KOG0094	221	consensus GTPase Rab6/YPT6/Ryh1, small G protein s	99.56
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	99.56
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	99.56
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.56
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.56
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.56
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	99.55
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	99.55
PLN03108	210	Rab family protein; Provisional	99.55
KOG0092	200	consensus GTPase Rab5/YPT51 and related small G pr	99.55
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	99.55
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	99.55
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	99.55
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	99.55
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.54
KOG1547	336	consensus Septin CDC10 and related P-loop GTPases	99.54
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.54
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.54
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.54
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.54
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.54
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	99.54
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.54
PLN00223	181	ADP-ribosylation factor; Provisional	99.54
CHL00071	409	tufA elongation factor Tu	99.54
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	99.54
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.53
PRK12296	500	obgE GTPase CgtA; Reviewed	99.53
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.53
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	99.53
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	99.53
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.52
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.52
PTZ00133	182	ADP-ribosylation factor; Provisional	99.52
KOG0394	210	consensus Ras-related GTPase [General function pre	99.52
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	99.52
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	99.52
PRK12735	396	elongation factor Tu; Reviewed	99.51
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	99.51
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	99.51
COG2229	187	Predicted GTPase [General function prediction only	99.51
PRK12297	424	obgE GTPase CgtA; Reviewed	99.51
PRK12736	394	elongation factor Tu; Reviewed	99.51
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	99.51
CHL00189	742	infB translation initiation factor 2; Provisional	99.51
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	99.5
KOG0087	222	consensus GTPase Rab11/YPT3, small G protein super	99.5
PLN00023	334	GTP-binding protein; Provisional	99.5
TIGR00485	394	EF-Tu translation elongation factor TU. This align	99.5
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	99.5
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	99.49
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.49
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.49
PRK10218	607	GTP-binding protein; Provisional	99.49
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	99.49
PRK00007	693	elongation factor G; Reviewed	99.48
PLN03127	447	Elongation factor Tu; Provisional	99.48
PRK04213	201	GTP-binding protein; Provisional	99.48
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.48
PRK00049	396	elongation factor Tu; Reviewed	99.48
PRK12739	691	elongation factor G; Reviewed	99.47
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.47
TIGR00503	527	prfC peptide chain release factor 3. This translat	99.47
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	99.47
KOG0078	207	consensus GTP-binding protein SEC4, small G protei	99.47
PLN03126	478	Elongation factor Tu; Provisional	99.47
PRK00741	526	prfC peptide chain release factor 3; Provisional	99.47
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	99.46
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	99.46
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.46
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	99.46
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.46
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	99.45
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.45
PRK09866	741	hypothetical protein; Provisional	99.44
COG2262	411	HflX GTPases [General function prediction only]	99.44
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.44
KOG0079	198	consensus GTP-binding protein H-ray, small G prote	99.44
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.44
PRK13351	687	elongation factor G; Reviewed	99.44
KOG1423	379	consensus Ras-like GTPase ERA [Cell cycle control,	99.43
KOG1145	683	consensus Mitochondrial translation initiation fac	99.43
KOG0098	216	consensus GTPase Rab2, small G protein superfamily	99.43
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	99.43
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	99.43
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.43
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.43
PTZ00141	446	elongation factor 1- alpha; Provisional	99.42
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	99.41
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	99.41
KOG0095	213	consensus GTPase Rab30, small G protein superfamil	99.41
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	99.4
PRK04004	586	translation initiation factor IF-2; Validated	99.4
KOG3859	406	consensus Septins (P-loop GTPases) [Cell cycle con	99.39
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	99.39
PRK05433	600	GTP-binding protein LepA; Provisional	99.38
KOG0073	185	consensus GTP-binding ADP-ribosylation factor-like	99.38
PLN00116	843	translation elongation factor EF-2 subunit; Provis	99.37
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	99.37
PRK04000	411	translation initiation factor IF-2 subunit gamma;	99.36
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	99.36
KOG0462	650	consensus Elongation factor-type GTP-binding prote	99.35
COG1100	219	GTPase SAR1 and related small G proteins [General	99.35
PTZ00416	836	elongation factor 2; Provisional	99.35
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	99.35
KOG0093	193	consensus GTPase Rab3, small G protein superfamily	99.34
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.34
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	99.33
COG0488	530	Uup ATPase components of ABC transporters with dup	99.33
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	99.33
KOG1191	531	consensus Mitochondrial GTPase [Translation, ribos	99.32
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	99.32
PF09439	181	SRPRB: Signal recognition particle receptor beta s	99.3
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	99.3
KOG1489	366	consensus Predicted GTP-binding protein (ODN super	99.3
KOG0395	196	consensus Ras-related GTPase [General function pre	99.3
PLN00043	447	elongation factor 1-alpha; Provisional	99.29
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	99.29
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	99.28
COG1217	603	TypA Predicted membrane GTPase involved in stress	99.25
KOG1490	620	consensus GTP-binding protein CRFG/NOG1 (ODN super	99.24
PRK11147	635	ABC transporter ATPase component; Reviewed	99.24
KOG0086	214	consensus GTPase Rab4, small G protein superfamily	99.23
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	99.23
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	99.23
KOG0088	218	consensus GTPase Rab21, small G protein superfamil	99.22
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	99.2
PRK07560	731	elongation factor EF-2; Reviewed	99.2
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	99.17
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	99.17
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	99.16
PRK12740	668	elongation factor G; Reviewed	99.16
COG1163	365	DRG Predicted GTPase [General function prediction	99.15
COG0536	369	Obg Predicted GTPase [General function prediction	99.15
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	99.15
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	99.15
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	99.15
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	99.14
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	99.14
PRK11147	635	ABC transporter ATPase component; Reviewed	99.13
KOG0091	213	consensus GTPase Rab39, small G protein superfamil	99.12
cd01851	224	GBP Guanylate-binding protein (GBP), N-terminal do	99.1
KOG0393	198	consensus Ras-related small GTPase, Rho type [Gene	99.1
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	99.1
KOG0070	181	consensus GTP-binding ADP-ribosylation factor Arf1	99.09
KOG0458	603	consensus Elongation factor 1 alpha [Translation,	99.09
COG5192	1077	BMS1 GTP-binding protein required for 40S ribosome	99.08
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	99.07
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	99.07
PRK13537	306	nodulation ABC transporter NodI; Provisional	99.07
cd01900	274	YchF YchF subfamily. YchF is a member of the Obg f	99.06
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	99.06
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	99.06
cd03246	173	ABCC_Protease_Secretion This family represents the	99.06
PRK13536	340	nodulation factor exporter subunit NodI; Provision	99.06
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	99.06
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	99.05
PTZ00258	390	GTP-binding protein; Provisional	99.05
KOG0074	185	consensus GTP-binding ADP-ribosylation factor-like	99.05
COG1127	263	Ttg2A ABC-type transport system involved in resist	99.04
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	99.04
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	99.04
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	99.04
COG4988	559	CydD ABC-type transport system involved in cytochr	99.03
COG4619	223	ABC-type uncharacterized transport system, ATPase	99.03
KOG0075	186	consensus GTP-binding ADP-ribosylation factor-like	99.03
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	99.02
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	99.02
PRK09601	364	GTP-binding protein YchF; Reviewed	99.02
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	99.01
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	99.01
KOG0448	749	consensus Mitofusin 1 GTPase, involved in mitochon	99.01
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	99.01
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	99.01
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	99.01
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	99.01
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	99.01
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	99.01
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	99.01
cd03269	210	ABC_putative_ATPase This subfamily is involved in	99.01
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	99.01
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	99.0
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	99.0
PRK10908	222	cell division protein FtsE; Provisional	99.0
KOG4252	246	consensus GTP-binding protein [Signal transduction	99.0
cd03216	163	ABC_Carb_Monos_I This family represents the domain	99.0
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	99.0
KOG0468	971	consensus U5 snRNP-specific protein [Translation,	99.0
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	99.0
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	99.0
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	98.99
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	98.99
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	98.99
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	98.99
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	98.98
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	98.98
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	98.98
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	98.98
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	98.98
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	98.98
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.97
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	98.97
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	98.97
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	98.97
COG4152	300	ABC-type uncharacterized transport system, ATPase	98.97
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	98.97
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	98.95
KOG0465	721	consensus Mitochondrial elongation factor [Transla	98.95
KOG0071	180	consensus GTP-binding ADP-ribosylation factor Arf6	98.94
cd03215	182	ABC_Carb_Monos_II This family represents domain II	98.94
KOG1954	532	consensus Endocytosis/signaling protein EHD1 [Sign	98.94
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	98.93
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	98.93
COG0411	250	LivG ABC-type branched-chain amino acid transport	98.93
COG1119	257	ModF ABC-type molybdenum transport system, ATPase	98.93
PRK09602	396	translation-associated GTPase; Reviewed	98.93
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	98.93
KOG0081	219	consensus GTPase Rab27, small G protein superfamil	98.93
COG4559	259	ABC-type hemin transport system, ATPase component	98.92
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	98.92
KOG0097	215	consensus GTPase Rab14, small G protein superfamil	98.91
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	98.91
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	98.91
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	98.91
COG0410	237	LivF ABC-type branched-chain amino acid transport	98.9
KOG1486	364	consensus GTP-binding protein DRG2 (ODN superfamil	98.9
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	98.9
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	98.9
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	98.9
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	98.9
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	98.9
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.9
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	98.9
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	98.89
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	98.89
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	98.89
PRK12288	347	GTPase RsgA; Reviewed	98.89
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	98.89
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	98.88
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	98.88
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	98.88
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	98.87
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	98.87
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	98.87
KOG0467	887	consensus Translation elongation factor 2/ribosome	98.87
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	98.87
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	98.87
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	98.86
PRK13546	264	teichoic acids export protein ATP-binding subunit;	98.86
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	98.86
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	98.86
PRK12289	352	GTPase RsgA; Reviewed	98.85
COG4586	325	ABC-type uncharacterized transport system, ATPase	98.85
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	98.85
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	98.84
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	98.84
PRK00098	298	GTPase RsgA; Reviewed	98.83
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	98.83
COG2884	223	FtsE Predicted ATPase involved in cell division [C	98.83
COG4525	259	TauB ABC-type taurine transport system, ATPase com	98.83
COG1162	301	Predicted GTPases [General function prediction onl	98.83
PRK09435	332	membrane ATPase/protein kinase; Provisional	98.83
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.82
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	98.82
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	98.82
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	98.82
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	98.82
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	98.81
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	98.81
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.81
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	98.81
KOG3883	198	consensus Ras family small GTPase [Signal transduc	98.81
COG3638	258	ABC-type phosphate/phosphonate transport system, A	98.81
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	98.81
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.81
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	98.8
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	98.8
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	98.8
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	98.8
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	98.8
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	98.8
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	98.8
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	98.79
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	98.79
COG0050	394	TufB GTPases - translation elongation factors [Tra	98.79
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	98.79
KOG0410	410	consensus Predicted GTP binding protein [General f	98.79
KOG0096	216	consensus GTPase Ran/TC4/GSP1 (nuclear protein tra	98.79
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	98.79
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	98.78
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	98.78
cd03289	275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	98.78
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	98.78
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	98.77
PRK15064	530	ABC transporter ATP-binding protein; Provisional	98.77
KOG0090	238	consensus Signal recognition particle receptor, be	98.77
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	98.76
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	98.76
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	98.76
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.76
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	98.76
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	98.76
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.76
KOG0083	192	consensus GTPase Rab26/Rab37, small G protein supe	98.76
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	98.76
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	98.76
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	98.76
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	98.76
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	98.75
KOG2486	320	consensus Predicted GTPase [General function predi	98.75
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	98.75
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	98.75
TIGR03348	1169	VI_IcmF type VI secretion protein IcmF. Members of	98.75
KOG0464	753	consensus Elongation factor G [Translation, riboso	98.75
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	98.75
KOG0066	807	consensus eIF2-interacting protein ABC50 (ABC supe	98.74
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	98.74
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	98.74
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	98.74
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	98.74
COG4604	252	CeuD ABC-type enterochelin transport system, ATPas	98.74
COG3276	447	SelB Selenocysteine-specific translation elongatio	98.74
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	98.74
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	98.74
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	98.74
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	98.74
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	98.74
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	98.73
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	98.73
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	98.73
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	98.73
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	98.73
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	98.72
COG4674	249	Uncharacterized ABC-type transport system, ATPase	98.72
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	98.72
COG4987	573	CydC ABC-type transport system involved in cytochr	98.72
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	98.72
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	98.72
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	98.71
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	98.71
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	98.71
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	98.71
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	98.71
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	98.71
cd03299	235	ABC_ModC_like Archeal protein closely related to M	98.71
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	98.71
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	98.7
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	98.7
TIGR01192	585	chvA glucan exporter ATP-binding protein. This mod	98.7
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	98.7
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	98.7
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	98.7
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	98.7
PRK14845	1049	translation initiation factor IF-2; Provisional	98.7
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	98.7
PF00005	137	ABC_tran: ABC transporter This structure is on hol	98.69
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	98.69
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	98.69
PRK03695	248	vitamin B12-transporter ATPase; Provisional	98.69

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=99.97  E-value=5e-30  Score=197.76  Aligned_cols=166  Identities=43%  Similarity=0.685  Sum_probs=136.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC-----------
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF-----------   88 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~-----------   88 (240)
                      .+|+|+|.+|+||||++|+|+|...+.++....+.|..+......+ .+..+.|+||||+.+.......           
T Consensus         1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~-~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~   79 (212)
T PF04548_consen    1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEV-DGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSL   79 (212)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEE-TTEEEEEEE--SSEETTEEHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeee-cceEEEEEeCCCCCCCcccHHHHHHHHHHHHHh
Confidence            4899999999999999999999999888877778888888888877 9999999999999877653221           


Q ss_pred             --CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCCcccHHHHhcccCCchHHHHHHHhCCc
Q 036363           89 --DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEANDETLEDYLGRECPKPLKEILHLFDNR  166 (240)
Q Consensus        89 --~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (240)
                        +++|++|+|++.. +++..+...++.+...||...+.++++|+|++|.+.+.  .+++|+....+..++.+++.|++|
T Consensus        80 ~~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~--~~~~~l~~~~~~~l~~li~~c~~R  156 (212)
T PF04548_consen   80 CSPGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEEIWKHTIVVFTHADELEDD--SLEDYLKKESNEALQELIEKCGGR  156 (212)
T ss_dssp             TTT-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTT--THHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             ccCCCeEEEEEEecC-cchHHHHHHHHHHHHHccHHHHhHhhHHhhhccccccc--cHHHHHhccCchhHhHHhhhcCCE
Confidence              8899999999998 99999999999999999999999999999999988876  699999864456799999999999


Q ss_pred             EEEEeCCCcchhhhHHHHHHHHH
Q 036363          167 CVLFDNKTKDAAKRTEQIGKLRS  189 (240)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~ll~  189 (240)
                      |++|++...+..+...|+.+||.
T Consensus       157 ~~~f~n~~~~~~~~~~qv~~Ll~  179 (212)
T PF04548_consen  157 YHVFNNKTKDKEKDESQVSELLE  179 (212)
T ss_dssp             EEECCTTHHHHHHHHHHHHHHHH
T ss_pred             EEEEeccccchhhhHHHHHHHHH
Confidence            99999995555455678888887

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=99.96  E-value=1.8e-28  Score=187.39  Aligned_cols=164  Identities=48%  Similarity=0.725  Sum_probs=140.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC-----------
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF-----------   88 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~-----------   88 (240)
                      ++|+|+|.+|+|||||+|+|+|...+.++....+.|..+......+ .+..+.|+||||+.+.......           
T Consensus         1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~-~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~   79 (196)
T cd01852           1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVW-DGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSL   79 (196)
T ss_pred             CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEE-CCeEEEEEECcCCCCccCChHHHHHHHHHHHHh
Confidence            4799999999999999999999987777666667888888888888 8889999999999987542211           


Q ss_pred             --CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCCcccHHHHhcccCCchHHHHHHHhCCc
Q 036363           89 --DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEANDETLEDYLGRECPKPLKEILHLFDNR  166 (240)
Q Consensus        89 --~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (240)
                        +++|++++|+++.. ++..+...++.+.+.||...+.++++|+|++|.+.+.  .+++|+.. ....++.+++.|+++
T Consensus        80 ~~~g~~~illVi~~~~-~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~--~~~~~~~~-~~~~l~~l~~~c~~r  155 (196)
T cd01852          80 SAPGPHAFLLVVPLGR-FTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGG--TLEDYLEN-SCEALKRLLEKCGGR  155 (196)
T ss_pred             cCCCCEEEEEEEECCC-cCHHHHHHHHHHHHHhChHhHhcEEEEEECccccCCC--cHHHHHHh-ccHHHHHHHHHhCCe
Confidence              78999999999984 9999999999999999988889999999999998775  89999988 458899999999999


Q ss_pred             EEEEeCCCcchhhhHHHHHHHHH
Q 036363          167 CVLFDNKTKDAAKRTEQIGKLRS  189 (240)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~ll~  189 (240)
                      |+.|++... ......|+.+|++
T Consensus       156 ~~~f~~~~~-~~~~~~q~~~Ll~  177 (196)
T cd01852         156 YVAFNNKAK-GEEQEQQVKELLA  177 (196)
T ss_pred             EEEEeCCCC-cchhHHHHHHHHH
Confidence            999999875 3344567888876

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=99.88  E-value=9e-22  Score=156.42  Aligned_cols=144  Identities=24%  Similarity=0.314  Sum_probs=113.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC---------
Q 036363           18 GVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF---------   88 (240)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~---------   88 (240)
                      ...+|+++|.+|+||||++|+|+|...+..+.. .+.+.........+ .+..+.||||||+.+.......         
T Consensus        37 ~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f-~s~t~~~~~~~~~~-~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l  114 (313)
T TIGR00991        37 SSLTILVMGKGGVGKSSTVNSIIGERIATVSAF-QSEGLRPMMVSRTR-AGFTLNIIDTPGLIEGGYINDQAVNIIKRFL  114 (313)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCcccccCC-CCcceeEEEEEEEE-CCeEEEEEECCCCCchHHHHHHHHHHHHHHh
Confidence            448999999999999999999999875433222 22333333344445 7889999999999976322111         


Q ss_pred             --CCceEEEEEEECC-CCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCCcccHHHHhcccCCchHHHHHHHhC
Q 036363           89 --DEIHAALVVFSVR-SRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEANDETLEDYLGRECPKPLKEILHLFD  164 (240)
Q Consensus        89 --~~~~~~l~v~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (240)
                        .++|+++||.+.+ .+++..+...++.+...||...+.++|+|+||+|.+++++.++++|+.+ ....++.++..+.
T Consensus       115 ~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~pd~~~~e~fv~~-~~~~lq~~i~~~~  192 (313)
T TIGR00991       115 LGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPPDGLEYNDFFSK-RSEALLRVIHSGA  192 (313)
T ss_pred             hcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCCCCCCHHHHHHh-cHHHHHHHHHHHh
Confidence              5799999997765 4788889999999999999999999999999999887777899999988 6788888887554

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=99.88  E-value=1.5e-21  Score=166.82  Aligned_cols=149  Identities=20%  Similarity=0.301  Sum_probs=120.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC-----------
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF-----------   88 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~-----------   88 (240)
                      .+|+|+|.+|+|||||+|+|+|...+.......+ |..+......+ .+..+.|+||||+.+.......           
T Consensus       119 lrIvLVGKTGVGKSSLINSILGekvf~vss~~~~-TTr~~ei~~~i-dG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~  196 (763)
T TIGR00993       119 LNILVLGKSGVGKSATINSIFGEVKFSTDAFGMG-TTSVQEIEGLV-QGVKIRVIDTPGLKSSASDQSKNEKILSSVKKF  196 (763)
T ss_pred             eEEEEECCCCCCHHHHHHHHhccccccccCCCCC-ceEEEEEEEEE-CCceEEEEECCCCCccccchHHHHHHHHHHHHH
Confidence            6899999999999999999999877666543333 44443344445 7889999999999987533211           


Q ss_pred             ---CCceEEEEEEECC-CCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCCc-----ccHHHHhcccCCchHHHH
Q 036363           89 ---DEIHAALVVFSVR-SRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEAND-----ETLEDYLGRECPKPLKEI  159 (240)
Q Consensus        89 ---~~~~~~l~v~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~~-----~~~~~~~~~~~~~~~~~~  159 (240)
                         .++|++|||+++. .....++...++.+.+.||...+.++|||+||+|.+++++     .++++|+.. +...++.+
T Consensus       197 Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lppdg~ng~~~tye~fv~~-rs~~Lq~~  275 (763)
T TIGR00993       197 IKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAPPDGPNGTPLSYDVFVAQ-RSHIVQQA  275 (763)
T ss_pred             HhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCCCCCCCCCCcCHHHHHhh-ChHHHHHH
Confidence               5789999999876 2334467899999999999999999999999999997543     589999988 77889999


Q ss_pred             HHHhCCcEEEEe
Q 036363          160 LHLFDNRCVLFD  171 (240)
Q Consensus       160 ~~~~~~~~~~~~  171 (240)
                      |..|.++++.|+
T Consensus       276 Irq~~g~~~l~n  287 (763)
T TIGR00993       276 IGQAVGDLRLMN  287 (763)
T ss_pred             HHHhcCcceecc
Confidence            999999888777

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=99.84  E-value=3.6e-20  Score=145.36  Aligned_cols=123  Identities=27%  Similarity=0.319  Sum_probs=98.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC---------
Q 036363           18 GVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF---------   88 (240)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~---------   88 (240)
                      ...+|+|+|.+|+|||||+|+|+|...+..+.. .+.|..+......+ ++..+.+|||||+.+.......         
T Consensus        30 ~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~-~~~T~~~~~~~~~~-~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I~  107 (249)
T cd01853          30 FSLTILVLGKTGVGKSSTINSIFGERKAATSAF-QSETLRVREVSGTV-DGFKLNIIDTPGLLESVMDQRVNRKILSSIK  107 (249)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHhCCCCcccCCC-CCceEEEEEEEEEE-CCeEEEEEECCCcCcchhhHHHHHHHHHHHH
Confidence            348999999999999999999999876544432 34566666666666 7889999999999977421111         


Q ss_pred             -----CCceEEEEEEECC-CCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCCcc
Q 036363           89 -----DEIHAALVVFSVR-SRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEANDE  142 (240)
Q Consensus        89 -----~~~~~~l~v~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~~~  142 (240)
                           ..+|+++||...+ .+.+..+...++.+.+.||...+.++++|+||+|...++..
T Consensus       108 ~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p~~~  167 (249)
T cd01853         108 RYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPPDGL  167 (249)
T ss_pred             HHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCCCCC
Confidence                 4789999998776 47888889999999999998889999999999998866533

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]

Probab=99.79  E-value=3.2e-17  Score=131.11  Aligned_cols=147  Identities=23%  Similarity=0.360  Sum_probs=103.8

Q ss_pred             CCCCceEEEEEcCCCCcHHHHHHHHhCCCCcccc----CCC--CCcceeEEEEEEEEe-CC--cEEEEEeCCCCCCCCCC
Q 036363           15 PSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSR----ASS--SGVTSTCEMHRTVLK-DG--QVVNVIDTPGLFDFSAG   85 (240)
Q Consensus        15 ~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~----~~~--~~~t~~~~~~~~~~~-~~--~~~~l~DtpG~~~~~~~   85 (240)
                      ..|-..+|+++|++|.|||||+|+|++.......    ...  ...+.........+. ++  ..++|+||||+.++...
T Consensus        19 k~Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idN   98 (373)
T COG5019          19 KKGIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDN   98 (373)
T ss_pred             hcCCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccc
Confidence            4466689999999999999999999987432221    111  123333444444432 22  36789999999998766


Q ss_pred             CcC------------------------------CCceEEEEEEECC-CCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCC
Q 036363           86 SEF------------------------------DEIHAALVVFSVR-SRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGR  134 (240)
Q Consensus        86 ~~~------------------------------~~~~~~l~v~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~  134 (240)
                      ...                              ..+|++||++.++ .++++-+...++.+.+.      .++|.|+.|+
T Consensus        99 s~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ls~~------vNlIPVI~Ka  172 (373)
T COG5019          99 SKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRLSKR------VNLIPVIAKA  172 (373)
T ss_pred             cccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHHhcc------cCeeeeeecc
Confidence            443                              7899999999987 68999999999988643      5799999999


Q ss_pred             CCCCCCcccHHHHhcccCCchHHHHHHHhCCcEE-EEeCCC
Q 036363          135 DELEANDETLEDYLGRECPKPLKEILHLFDNRCV-LFDNKT  174 (240)
Q Consensus       135 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  174 (240)
                      |.+..+  .+..+...     +...+..+..+++ +|+...
T Consensus       173 D~lT~~--El~~~K~~-----I~~~i~~~nI~vf~pyd~e~  206 (373)
T COG5019         173 DTLTDD--ELAEFKER-----IREDLEQYNIPVFDPYDPED  206 (373)
T ss_pred             ccCCHH--HHHHHHHH-----HHHHHHHhCCceeCCCCccc
Confidence            988664  55554444     5666666666666 455443

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.77  E-value=4.3e-18  Score=123.42  Aligned_cols=137  Identities=21%  Similarity=0.246  Sum_probs=94.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC----------C
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF----------D   89 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~----------~   89 (240)
                      .+|+++|.+++|||||+|+|+|.....+.  .+|.|.......+.+ .+..+.++|+||.++.......          .
T Consensus         1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n--~pG~Tv~~~~g~~~~-~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~   77 (156)
T PF02421_consen    1 IRIALVGNPNVGKSTLFNALTGAKQKVGN--WPGTTVEKKEGIFKL-GDQQVELVDLPGIYSLSSKSEEERVARDYLLSE   77 (156)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHTTSEEEEE--STTSSSEEEEEEEEE-TTEEEEEEE----SSSSSSSHHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCceecC--CCCCCeeeeeEEEEe-cCceEEEEECCCcccCCCCCcHHHHHHHHHhhc
Confidence            37999999999999999999999854333  367888887777777 8899999999999887655433          7


Q ss_pred             CceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCCcccHHHHhcccCCchHHHHHHHhCCcEEE
Q 036363           90 EIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEANDETLEDYLGRECPKPLKEILHLFDNRCVL  169 (240)
Q Consensus        90 ~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (240)
                      .+|++++|+|++ .+ ..+...+.++.+.     ..|+++++|++|.....+..+          ....+-+..+.+...
T Consensus        78 ~~D~ii~VvDa~-~l-~r~l~l~~ql~e~-----g~P~vvvlN~~D~a~~~g~~i----------d~~~Ls~~Lg~pvi~  140 (156)
T PF02421_consen   78 KPDLIIVVVDAT-NL-ERNLYLTLQLLEL-----GIPVVVVLNKMDEAERKGIEI----------DAEKLSERLGVPVIP  140 (156)
T ss_dssp             SSSEEEEEEEGG-GH-HHHHHHHHHHHHT-----TSSEEEEEETHHHHHHTTEEE-----------HHHHHHHHTS-EEE
T ss_pred             CCCEEEEECCCC-CH-HHHHHHHHHHHHc-----CCCEEEEEeCHHHHHHcCCEE----------CHHHHHHHhCCCEEE
Confidence            999999999998 33 2334455555432     267999999999665432111          123444445778888


Q ss_pred             EeCCCcc
Q 036363          170 FDNKTKD  176 (240)
Q Consensus       170 ~~~~~~~  176 (240)
                      ++.....
T Consensus       141 ~sa~~~~  147 (156)
T PF02421_consen  141 VSARTGE  147 (156)
T ss_dssp             EBTTTTB
T ss_pred             EEeCCCc
Confidence            8877543

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>COG1159 Era GTPase [General function prediction only]

Probab=99.76  E-value=2.8e-17  Score=128.35  Aligned_cols=114  Identities=19%  Similarity=0.282  Sum_probs=89.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC----------C
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF----------D   89 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~----------~   89 (240)
                      -.|++||.+++|||||+|.|+|......+.  ...|+..........++..+.++||||++........          .
T Consensus         7 GfVaIiGrPNvGKSTLlN~l~G~KisIvS~--k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~   84 (298)
T COG1159           7 GFVAIIGRPNVGKSTLLNALVGQKISIVSP--KPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSALK   84 (298)
T ss_pred             EEEEEEcCCCCcHHHHHHHHhcCceEeecC--CcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHhc
Confidence            589999999999999999999987644433  3444444444444436788999999999988443322          9


Q ss_pred             CceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCC
Q 036363           90 EIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEAN  140 (240)
Q Consensus        90 ~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~  140 (240)
                      .+|+++||+++...+...+...+..++.     ...|+++++||.|.+.+.
T Consensus        85 dvDlilfvvd~~~~~~~~d~~il~~lk~-----~~~pvil~iNKID~~~~~  130 (298)
T COG1159          85 DVDLILFVVDADEGWGPGDEFILEQLKK-----TKTPVILVVNKIDKVKPK  130 (298)
T ss_pred             cCcEEEEEEeccccCCccHHHHHHHHhh-----cCCCeEEEEEccccCCcH
Confidence            9999999999998899999888888875     235799999999988765

>PRK15494 era GTPase Era; Provisional

Probab=99.74  E-value=1.8e-16  Score=130.44  Aligned_cols=125  Identities=20%  Similarity=0.233  Sum_probs=84.7

Q ss_pred             ccCCccccCCCCC-----ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCC
Q 036363            6 IDDDCELTSPSNG-----VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLF   80 (240)
Q Consensus         6 ~~~~~~~~~~~~~-----~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~   80 (240)
                      ..+.+++.+..|.     ..+|+++|.+|+|||||+|+|+|....... ....+|.........+ ++..+.+|||||+.
T Consensus        34 ~~~~~~~~~~~g~~~~~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs-~k~~tTr~~~~~~~~~-~~~qi~~~DTpG~~  111 (339)
T PRK15494         34 STSKLPLEVKFGKMSNQKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVT-PKVQTTRSIITGIITL-KDTQVILYDTPGIF  111 (339)
T ss_pred             cccCCccccccccccccceeEEEEEcCCCCCHHHHHHHHhCCceeecc-CCCCCccCcEEEEEEe-CCeEEEEEECCCcC
Confidence            4556666666551     239999999999999999999997653221 1233444433344455 67789999999996


Q ss_pred             CCCCCCc----------CCCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363           81 DFSAGSE----------FDEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDEL  137 (240)
Q Consensus        81 ~~~~~~~----------~~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~  137 (240)
                      .......          ...+|++++|+|....+...+..++..+...     ..|.++|+||+|..
T Consensus       112 ~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~-----~~p~IlViNKiDl~  173 (339)
T PRK15494        112 EPKGSLEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSL-----NIVPIFLLNKIDIE  173 (339)
T ss_pred             CCcccHHHHHHHHHHHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhc-----CCCEEEEEEhhcCc
Confidence            5432211          1689999999998876776666666555431     13467899999954

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=99.74  E-value=2.6e-17  Score=115.09  Aligned_cols=105  Identities=19%  Similarity=0.285  Sum_probs=78.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCc---C--------C
Q 036363           21 TVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSE---F--------D   89 (240)
Q Consensus        21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~---~--------~   89 (240)
                      +|+|+|.+|+|||||+|+|++......+.. .+.|....+....+ ++..+.++||||+.+......   .        .
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~-~~~T~~~~~~~~~~-~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~   78 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTGKKLAKVSNI-PGTTRDPVYGQFEY-NNKKFILVDTPGINDGESQDNDGKEIRKFLEQIS   78 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSTSSEESSS-TTSSSSEEEEEEEE-TTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHC
T ss_pred             CEEEECCCCCCHHHHHHHHhcccccccccc-ccceeeeeeeeeee-ceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHH
Confidence            689999999999999999999654333333 45566665555666 788889999999987644322   1        8


Q ss_pred             CceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeC
Q 036363           90 EIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSG  133 (240)
Q Consensus        90 ~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~  133 (240)
                      .+|+++||+++..+....+...++.+.      ..+|+++|+||
T Consensus        79 ~~d~ii~vv~~~~~~~~~~~~~~~~l~------~~~~~i~v~NK  116 (116)
T PF01926_consen   79 KSDLIIYVVDASNPITEDDKNILRELK------NKKPIILVLNK  116 (116)
T ss_dssp             TESEEEEEEETTSHSHHHHHHHHHHHH------TTSEEEEEEES
T ss_pred             HCCEEEEEEECCCCCCHHHHHHHHHHh------cCCCEEEEEcC
Confidence            899999999987544445566666662      23789999997

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.72  E-value=4e-17  Score=134.25  Aligned_cols=111  Identities=28%  Similarity=0.302  Sum_probs=94.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCC--cC---------
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGS--EF---------   88 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~--~~---------   88 (240)
                      ..|+|||.+++|||||+|+|+|........ ..|+|....+....| .+..+.++||+|+.+.....  ..         
T Consensus         4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D-~pGvTRDr~y~~~~~-~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai   81 (444)
T COG1160           4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSD-TPGVTRDRIYGDAEW-LGREFILIDTGGLDDGDEDELQELIREQALIAI   81 (444)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCeeeEeec-CCCCccCCccceeEE-cCceEEEEECCCCCcCCchHHHHHHHHHHHHHH
Confidence            589999999999999999999987654433 478999999999999 88889999999999765321  11         


Q ss_pred             CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363           89 DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDEL  137 (240)
Q Consensus        89 ~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~  137 (240)
                      ..+|++|||+|...+++..|..+.+.|+.     ..+|+++|+||+|..
T Consensus        82 ~eADvilfvVD~~~Git~~D~~ia~~Lr~-----~~kpviLvvNK~D~~  125 (444)
T COG1160          82 EEADVILFVVDGREGITPADEEIAKILRR-----SKKPVILVVNKIDNL  125 (444)
T ss_pred             HhCCEEEEEEeCCCCCCHHHHHHHHHHHh-----cCCCEEEEEEcccCc
Confidence            89999999999999999999999888862     236899999999976

>cd01850 CDC_Septin CDC/Septin

Probab=99.71  E-value=5.5e-16  Score=123.94  Aligned_cols=144  Identities=20%  Similarity=0.267  Sum_probs=97.3

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCC------CCCcceeEEEEEEEEe-CC--cEEEEEeCCCCCCCCCCCc
Q 036363           17 NGVRTVVLVGHTGNGKSATGNSILGRRAFKSRAS------SSGVTSTCEMHRTVLK-DG--QVVNVIDTPGLFDFSAGSE   87 (240)
Q Consensus        17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~------~~~~t~~~~~~~~~~~-~~--~~~~l~DtpG~~~~~~~~~   87 (240)
                      |-..+|+++|++|+|||||+|+|++.........      ....|........... ++  ..+.+|||||+.++.....
T Consensus         2 g~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~   81 (276)
T cd01850           2 GFQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSD   81 (276)
T ss_pred             CcEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchh
Confidence            3458999999999999999999999875443221      1223333332222221 34  3689999999987654211


Q ss_pred             C------------------------------CCceEEEEEEECC-CCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCC
Q 036363           88 F------------------------------DEIHAALVVFSVR-SRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDE  136 (240)
Q Consensus        88 ~------------------------------~~~~~~l~v~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~  136 (240)
                      .                              ..+|+++|+++++ .++...+...++.+..      ..|+++|+||+|.
T Consensus        82 ~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~~------~v~vi~VinK~D~  155 (276)
T cd01850          82 CWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLSK------RVNIIPVIAKADT  155 (276)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHhc------cCCEEEEEECCCc
Confidence            0                              5789999999987 4677888888888753      2579999999998


Q ss_pred             CCCCcccHHHHhcccCCchHHHHHHHhCCcEEEEeCC
Q 036363          137 LEANDETLEDYLGRECPKPLKEILHLFDNRCVLFDNK  173 (240)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (240)
                      +...  .+..+..     .+.+.+...+.+++.|...
T Consensus       156 l~~~--e~~~~k~-----~i~~~l~~~~i~~~~~~~~  185 (276)
T cd01850         156 LTPE--ELKEFKQ-----RIMEDIEEHNIKIYKFPED  185 (276)
T ss_pred             CCHH--HHHHHHH-----HHHHHHHHcCCceECCCCC
Confidence            7643  3333332     3667777777777776654

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.71  E-value=7.6e-16  Score=115.95  Aligned_cols=114  Identities=16%  Similarity=0.276  Sum_probs=78.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--------
Q 036363           17 NGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--------   88 (240)
Q Consensus        17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--------   88 (240)
                      ....+|+++|++|+|||||+|.|++...........+.|..+.++..   + ..+.+|||||+.........        
T Consensus        16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~---~-~~~~liDtpG~~~~~~~~~~~~~~~~~~   91 (179)
T TIGR03598        16 DDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEV---N-DGFRLVDLPGYGYAKVSKEEKEKWQKLI   91 (179)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEe---C-CcEEEEeCCCCccccCChhHHHHHHHHH
Confidence            35589999999999999999999987522221223344554443322   2 36889999998654321110        


Q ss_pred             -------CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363           89 -------DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        89 -------~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~  139 (240)
                             ..++++++|++++.+++..+...+..+..     ...|+++++||+|....
T Consensus        92 ~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~-----~~~pviiv~nK~D~~~~  144 (179)
T TIGR03598        92 EEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRE-----RGIPVLIVLTKADKLKK  144 (179)
T ss_pred             HHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHH-----cCCCEEEEEECcccCCH
Confidence                   35689999999998888888776665543     13579999999996643

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.70  E-value=4.2e-15  Score=119.95  Aligned_cols=149  Identities=21%  Similarity=0.252  Sum_probs=101.4

Q ss_pred             ccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccc-----cCCCCCcceeEEEEEEEEe-CC--cEEEEEeCCCCCCCC
Q 036363           12 LTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKS-----RASSSGVTSTCEMHRTVLK-DG--QVVNVIDTPGLFDFS   83 (240)
Q Consensus        12 ~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~-----~~~~~~~t~~~~~~~~~~~-~~--~~~~l~DtpG~~~~~   83 (240)
                      ..+..|-..+++++|++|.|||||+|+|++......     .......|........... ++  ..++|+||||+.+..
T Consensus        14 ~~~KkG~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~v   93 (366)
T KOG2655|consen   14 KSVKKGFDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAV   93 (366)
T ss_pred             HHHhcCCceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccc
Confidence            345567779999999999999999999988743221     1111222444444444442 22  367899999999876


Q ss_pred             CCCcC-----------------------------CCceEEEEEEECC-CCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeC
Q 036363           84 AGSEF-----------------------------DEIHAALVVFSVR-SRFSQEEEATLHSLQTLFGKNCFDYMIVVFSG  133 (240)
Q Consensus        84 ~~~~~-----------------------------~~~~~~l~v~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~  133 (240)
                      .....                             ..+|++||++.++ .++.+-|...++.+...      .++|.|+.|
T Consensus        94 dns~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l~~~------vNiIPVI~K  167 (366)
T KOG2655|consen   94 DNSNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKKLSKK------VNLIPVIAK  167 (366)
T ss_pred             cccccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHHHHhcc------ccccceeec
Confidence            55433                             6899999999988 45999999999988643      569999999


Q ss_pred             CCCCCCCcccHHHHhcccCCchHHHHHHHhCCcEEEEeCC
Q 036363          134 RDELEANDETLEDYLGRECPKPLKEILHLFDNRCVLFDNK  173 (240)
Q Consensus       134 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (240)
                      +|.+.+.  .+..+...     +...+..+..+++.|...
T Consensus       168 aD~lT~~--El~~~K~~-----I~~~i~~~nI~vf~fp~~  200 (366)
T KOG2655|consen  168 ADTLTKD--ELNQFKKR-----IRQDIEEHNIKVFDFPTD  200 (366)
T ss_pred             cccCCHH--HHHHHHHH-----HHHHHHHcCcceecCCCC
Confidence            9988764  44443333     444455555555544443

>cd04171 SelB SelB subfamily

Probab=99.69  E-value=4.6e-16  Score=115.16  Aligned_cols=114  Identities=21%  Similarity=0.307  Sum_probs=76.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCcc-ccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEEEEE
Q 036363           21 TVVLVGHTGNGKSATGNSILGRRAFK-SRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAALVV   97 (240)
Q Consensus        21 ~i~lvG~~g~GKSTlin~l~g~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~v   97 (240)
                      +|+++|++|+|||||+|+|++..... ......+.|....+....+..+..+.+|||||+..+......  .++|++++|
T Consensus         2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~V   81 (164)
T cd04171           2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKFIKNMLAGAGGIDLVLLV   81 (164)
T ss_pred             EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHHHHHHHhhhhcCCEEEEE
Confidence            68999999999999999999753211 111123445555555555522678999999998766422111  789999999


Q ss_pred             EECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           98 FSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        98 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      +|+++.+.......+..+. ..+   .+|+++++||+|...
T Consensus        82 ~d~~~~~~~~~~~~~~~~~-~~~---~~~~ilv~NK~Dl~~  118 (164)
T cd04171          82 VAADEGIMPQTREHLEILE-LLG---IKRGLVVLTKADLVD  118 (164)
T ss_pred             EECCCCccHhHHHHHHHHH-HhC---CCcEEEEEECccccC
Confidence            9998655555545444332 222   247999999999543

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>TIGR00436 era GTP-binding protein Era

Probab=99.69  E-value=7.6e-16  Score=123.28  Aligned_cols=110  Identities=18%  Similarity=0.175  Sum_probs=73.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCc----------CCC
Q 036363           21 TVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSE----------FDE   90 (240)
Q Consensus        21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~----------~~~   90 (240)
                      +|+++|++|+|||||+|+|+|........ ..++|.... ......++..+.++||||+........          ...
T Consensus         2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~-~~~TTr~~i-~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~   79 (270)
T TIGR00436         2 FVAILGRPNVGKSTLLNQLHGQKISITSP-KAQTTRNRI-SGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGG   79 (270)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCcEeecCC-CCCcccCcE-EEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhh
Confidence            79999999999999999999986432222 123343322 233332566789999999976532211          178


Q ss_pred             ceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           91 IHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        91 ~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      +|++++|+|++...+.. ...+..+..     ...|+++|+||+|...
T Consensus        80 aDvvl~VvD~~~~~~~~-~~i~~~l~~-----~~~p~ilV~NK~Dl~~  121 (270)
T TIGR00436        80 VDLILFVVDSDQWNGDG-EFVLTKLQN-----LKRPVVLTRNKLDNKF  121 (270)
T ss_pred             CCEEEEEEECCCCCchH-HHHHHHHHh-----cCCCEEEEEECeeCCC
Confidence            99999999998655443 334444432     2367999999999653

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.69  E-value=7e-16  Score=113.22  Aligned_cols=111  Identities=26%  Similarity=0.304  Sum_probs=80.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCc----------CC
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSE----------FD   89 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~----------~~   89 (240)
                      .+|+++|++|+|||||++++++........ ..+.+.........+ .+..+.+|||||+.+......          ..
T Consensus         2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~   79 (157)
T cd04164           2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSD-IAGTTRDVIEESIDI-GGIPVRLIDTAGIRETEDEIEKIGIERAREAIE   79 (157)
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCceEeccC-CCCCccceEEEEEEe-CCEEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence            689999999999999999999876422222 234444444444555 677899999999987654311          17


Q ss_pred             CceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363           90 EIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        90 ~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~  139 (240)
                      .+|++++|+|++++.+..+...+..       ....|+++|+||+|....
T Consensus        80 ~~~~~v~v~d~~~~~~~~~~~~~~~-------~~~~~vi~v~nK~D~~~~  122 (157)
T cd04164          80 EADLVLFVIDASRGLDEEDLEILEL-------PADKPIIVVLNKSDLLPD  122 (157)
T ss_pred             hCCEEEEEEECCCCCCHHHHHHHHh-------hcCCCEEEEEEchhcCCc
Confidence            8999999999997777766555443       123679999999997654

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.68  E-value=1.3e-15  Score=113.36  Aligned_cols=114  Identities=24%  Similarity=0.202  Sum_probs=75.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC-----------
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF-----------   88 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~-----------   88 (240)
                      ++|+++|++|+|||||+|+|++.......  ..+.|.........+ .+..+.+|||||+.+.......           
T Consensus         1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~--~~~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~   77 (168)
T cd01897           1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAP--YPFTTKSLFVGHFDY-KYLRWQVIDTPGLLDRPLEERNTIEMQAITALA   77 (168)
T ss_pred             CeEEEEcCCCCCHHHHHHHHhcCCCccCC--CCCcccceeEEEEcc-CceEEEEEECCCcCCccccCCchHHHHHHHHHH
Confidence            47999999999999999999997643221  123344444444444 5678999999998643221110           


Q ss_pred             CCceEEEEEEECCCCCC--HH-HHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363           89 DEIHAALVVFSVRSRFS--QE-EEATLHSLQTLFGKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        89 ~~~~~~l~v~~~~~~~~--~~-~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~  139 (240)
                      ...|++++|+|+++..+  .. ...++..+...+.   ..|+++|+||+|....
T Consensus        78 ~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~---~~pvilv~NK~Dl~~~  128 (168)
T cd01897          78 HLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFK---NKPVIVVLNKIDLLTF  128 (168)
T ss_pred             hccCcEEEEEeCCcccccchHHHHHHHHHHHhhcC---cCCeEEEEEccccCch
Confidence            23689999999985433  22 2345555554332   3689999999996543

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.68  E-value=1.3e-15  Score=125.49  Aligned_cols=144  Identities=20%  Similarity=0.267  Sum_probs=108.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC---------
Q 036363           18 GVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF---------   88 (240)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~---------   88 (240)
                      ...+|+++|.+++|||||+|+|+|......+. ..|+|...-.....+ +++.+.++||.|+-.-......         
T Consensus       177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~-~aGTTRD~I~~~~e~-~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt  254 (444)
T COG1160         177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSD-IAGTTRDSIDIEFER-DGRKYVLIDTAGIRRKGKITESVEKYSVART  254 (444)
T ss_pred             CceEEEEEeCCCCCchHHHHHhccCceEEecC-CCCccccceeeeEEE-CCeEEEEEECCCCCcccccccceEEEeehhh
Confidence            34899999999999999999999987654443 367777777777777 8999999999999876555443         


Q ss_pred             ----CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCCcccHHHHhcccCCchHHHHHHHhC
Q 036363           89 ----DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEANDETLEDYLGRECPKPLKEILHLFD  164 (240)
Q Consensus        89 ----~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (240)
                          ..+|++++|+|++.+++.++......+.+.     ..++++|+||||.+..+...++++...     +...+....
T Consensus       255 ~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~-----g~~~vIvvNKWDl~~~~~~~~~~~k~~-----i~~~l~~l~  324 (444)
T COG1160         255 LKAIERADVVLLVIDATEGISEQDLRIAGLIEEA-----GRGIVIVVNKWDLVEEDEATMEEFKKK-----LRRKLPFLD  324 (444)
T ss_pred             HhHHhhcCEEEEEEECCCCchHHHHHHHHHHHHc-----CCCeEEEEEccccCCchhhHHHHHHHH-----HHHHhcccc
Confidence                889999999999999999999999888653     256999999999887642344444433     344443333


Q ss_pred             -CcEEEEeCC
Q 036363          165 -NRCVLFDNK  173 (240)
Q Consensus       165 -~~~~~~~~~  173 (240)
                       .+.+.++..
T Consensus       325 ~a~i~~iSA~  334 (444)
T COG1160         325 FAPIVFISAL  334 (444)
T ss_pred             CCeEEEEEec
Confidence             344455544

>cd01895 EngA2 EngA2 subfamily

Probab=99.68  E-value=3.2e-15  Score=111.46  Aligned_cols=114  Identities=18%  Similarity=0.226  Sum_probs=79.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC----------
Q 036363           19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF----------   88 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~----------   88 (240)
                      +.+|+++|++|+|||||+|+|++......... .+.+.......... .+..+.+|||||+.+.......          
T Consensus         2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~   79 (174)
T cd01895           2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDI-AGTTRDSIDVPFEY-DGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTL   79 (174)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCccceeccCC-CCCccCceeeEEEE-CCeeEEEEECCCCccccchhccHHHHHHHHHH
Confidence            47899999999999999999998754322221 23333333333444 6677899999998765321111          


Q ss_pred             ---CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363           89 ---DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        89 ---~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~  139 (240)
                         ..+|++++|+|+.++.+......+..+..   .  ..|+++++||+|....
T Consensus        80 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~---~--~~~~iiv~nK~Dl~~~  128 (174)
T cd01895          80 KAIERADVVLLVIDATEGITEQDLRIAGLILE---E--GKALVIVVNKWDLVEK  128 (174)
T ss_pred             HHHhhcCeEEEEEeCCCCcchhHHHHHHHHHh---c--CCCEEEEEeccccCCc
Confidence               67899999999997777766655554432   1  2679999999996654

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=99.67  E-value=1.1e-15  Score=113.41  Aligned_cols=115  Identities=19%  Similarity=0.205  Sum_probs=76.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEe-CCcEEEEEeCCCCCCCCCCCcC--CCceEEEEE
Q 036363           21 TVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLK-DGQVVNVIDTPGLFDFSAGSEF--DEIHAALVV   97 (240)
Q Consensus        21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~v   97 (240)
                      +|+++|++|+|||||++++++...........+  ........... ....+.+|||||...+......  ..+|++++|
T Consensus         2 ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~--~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv   79 (168)
T cd04119           2 KVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIG--IDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLV   79 (168)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCCCCCCCCCccc--eeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEE
Confidence            799999999999999999999875443222222  22222223321 2346789999998766543333  889999999


Q ss_pred             EECCCCCCHHH-HHHHHHHHHHhCC---CcCCeEEEEEeCCCCC
Q 036363           98 FSVRSRFSQEE-EATLHSLQTLFGK---NCFDYMIVVFSGRDEL  137 (240)
Q Consensus        98 ~~~~~~~~~~~-~~~l~~l~~~~~~---~~~~~~i~v~~~~D~~  137 (240)
                      +|++++.+... ..++..+...+..   ....|+++|+||+|..
T Consensus        80 ~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~  123 (168)
T cd04119          80 YDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLT  123 (168)
T ss_pred             EECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcc
Confidence            99986655443 3444555544432   1347899999999965

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd01898 Obg Obg subfamily

Probab=99.67  E-value=1.5e-15  Score=113.25  Aligned_cols=116  Identities=21%  Similarity=0.138  Sum_probs=74.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCc-EEEEEeCCCCCCCCCCCcC---------CC
Q 036363           21 TVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQ-VVNVIDTPGLFDFSAGSEF---------DE   90 (240)
Q Consensus        21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~l~DtpG~~~~~~~~~~---------~~   90 (240)
                      .|+++|++|+|||||+|+|++.....+..  .+.|.........+ .+. .+.+|||||+.+.......         ..
T Consensus         2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~--~~~t~~~~~~~~~~-~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~   78 (170)
T cd01898           2 DVGLVGLPNAGKSTLLSAISNAKPKIADY--PFTTLVPNLGVVRV-DDGRSFVVADIPGLIEGASEGKGLGHRFLRHIER   78 (170)
T ss_pred             CeEEECCCCCCHHHHHHHHhcCCccccCC--CccccCCcceEEEc-CCCCeEEEEecCcccCcccccCCchHHHHHHHHh
Confidence            58999999999999999999865421111  22344444444444 554 8899999998643322111         56


Q ss_pred             ceEEEEEEECCCC-CCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363           91 IHAALVVFSVRSR-FSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        91 ~~~~l~v~~~~~~-~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~  139 (240)
                      +|++++|+|+++. -+.... .+.+.+..........|+++|+||+|....
T Consensus        79 ~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~  129 (170)
T cd01898          79 TRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDE  129 (170)
T ss_pred             CCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCc
Confidence            8999999999855 344433 344444443221124678999999996544

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=99.67  E-value=1.4e-15  Score=121.53  Aligned_cols=145  Identities=23%  Similarity=0.299  Sum_probs=86.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCC------CCCcceeEEEEEEEEe-CC--cEEEEEeCCCCCCCCCCCcC-
Q 036363           19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRAS------SSGVTSTCEMHRTVLK-DG--QVVNVIDTPGLFDFSAGSEF-   88 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~------~~~~t~~~~~~~~~~~-~~--~~~~l~DtpG~~~~~~~~~~-   88 (240)
                      ..+|+++|.+|+|||||+|+|++.........      ....+........... ++  ..+.++||||+.+....... 
T Consensus         4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~   83 (281)
T PF00735_consen    4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW   83 (281)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence            47999999999999999999999765444210      1112222222222221 22  26789999999876544322 


Q ss_pred             ----------------------------CCceEEEEEEECC-CCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363           89 ----------------------------DEIHAALVVFSVR-SRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        89 ----------------------------~~~~~~l~v~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~  139 (240)
                                                  ..+|++||+++++ .++++.+...++.|..      ..|+|.|++|+|.+.+
T Consensus        84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls~------~vNvIPvIaKaD~lt~  157 (281)
T PF00735_consen   84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLSK------RVNVIPVIAKADTLTP  157 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHTT------TSEEEEEESTGGGS-H
T ss_pred             HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhcc------cccEEeEEecccccCH
Confidence                                        8899999999997 5789999998888853      2679999999998875


Q ss_pred             CcccHHHHhcccCCchHHHHHHHhCCcEEEEeCCCcc
Q 036363          140 NDETLEDYLGRECPKPLKEILHLFDNRCVLFDNKTKD  176 (240)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (240)
                      .  ++..+...     +..-++..+.+++.|.....+
T Consensus       158 ~--el~~~k~~-----i~~~l~~~~I~~f~f~~~~~~  187 (281)
T PF00735_consen  158 E--ELQAFKQR-----IREDLEENNIKIFDFPEDDDD  187 (281)
T ss_dssp             H--HHHHHHHH-----HHHHHHHTT--S---------
T ss_pred             H--HHHHHHHH-----HHHHHHHcCceeecccccccc
Confidence            3  55555444     677778888888777766443

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>cd01863 Rab18 Rab18 subfamily

Probab=99.67  E-value=2.8e-15  Score=110.73  Aligned_cols=115  Identities=19%  Similarity=0.155  Sum_probs=75.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEe-CCcEEEEEeCCCCCCCCCCCcC--CCceEEEE
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLK-DGQVVNVIDTPGLFDFSAGSEF--DEIHAALV   96 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~   96 (240)
                      .+|+++|++|+|||||++++++...........+.+...  ....+. ....+.+|||||...+......  ..+|++++
T Consensus         1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   78 (161)
T cd01863           1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKV--KTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVIL   78 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEE--EEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEE
Confidence            379999999999999999999876533222222222222  222221 2246789999998766544433  78999999


Q ss_pred             EEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363           97 VFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDEL  137 (240)
Q Consensus        97 v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~  137 (240)
                      |+|.++..+.... .++..+..... ....|+++|+||+|..
T Consensus        79 v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~~~~iv~nK~D~~  119 (161)
T cd01863          79 VYDVTRRDTFTNLETWLNELETYST-NNDIVKMLVGNKIDKE  119 (161)
T ss_pred             EEECCCHHHHHhHHHHHHHHHHhCC-CCCCcEEEEEECCccc
Confidence            9999865555543 33344444332 2346789999999965

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd01878 HflX HflX subfamily

Probab=99.67  E-value=1.3e-15  Score=117.07  Aligned_cols=118  Identities=26%  Similarity=0.223  Sum_probs=77.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCc----------C
Q 036363           19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSE----------F   88 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~----------~   88 (240)
                      ..+|+++|++|||||||+|.|++......+.  ...|.........+.+...+.+|||||+.+......          .
T Consensus        41 ~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~  118 (204)
T cd01878          41 IPTVALVGYTNAGKSTLFNALTGADVYAEDQ--LFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQLVEAFRSTLEEV  118 (204)
T ss_pred             CCeEEEECCCCCCHHHHHHHHhcchhccCCc--cceeccceeEEEEecCCceEEEeCCCccccCCCHHHHHHHHHHHHHH
Confidence            4799999999999999999999976432222  223333333444452334899999999865322111          0


Q ss_pred             CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363           89 DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        89 ~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~  139 (240)
                      ..+|++++|+|++++.+......+..+...++. ...|+++|+||+|....
T Consensus       119 ~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~-~~~~viiV~NK~Dl~~~  168 (204)
T cd01878         119 AEADLLLHVVDASDPDYEEQIETVEKVLKELGA-EDIPMILVLNKIDLLDD  168 (204)
T ss_pred             hcCCeEEEEEECCCCChhhHHHHHHHHHHHcCc-CCCCEEEEEEccccCCh
Confidence            578999999999866665554333333333332 23679999999996554

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>cd04124 RabL2 RabL2 subfamily

Probab=99.66  E-value=7.2e-16  Score=114.08  Aligned_cols=112  Identities=21%  Similarity=0.203  Sum_probs=74.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEe-CCcEEEEEeCCCCCCCCCCCcC--CCceEEEE
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLK-DGQVVNVIDTPGLFDFSAGSEF--DEIHAALV   96 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~   96 (240)
                      .+|+++|.+|+|||||++++++...........+.+.  ........ ....+.+|||||...+......  ..+|++++
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~   78 (161)
T cd04124           1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTL--YKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACIL   78 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEE--EEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEE
Confidence            3799999999999999999987654332222111111  11122221 2336789999999887665554  88999999


Q ss_pred             EEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCC
Q 036363           97 VFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDE  136 (240)
Q Consensus        97 v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~  136 (240)
                      |+|++++.+..+ ..++..+.....   ..|+++|+||+|.
T Consensus        79 v~d~~~~~s~~~~~~~~~~i~~~~~---~~p~ivv~nK~Dl  116 (161)
T cd04124          79 VFDVTRKITYKNLSKWYEELREYRP---EIPCIVVANKIDL  116 (161)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhCC---CCcEEEEEECccC
Confidence            999986666554 344555544322   2679999999995

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>COG1084 Predicted GTPase [General function prediction only]

Probab=99.66  E-value=2.2e-15  Score=118.95  Aligned_cols=113  Identities=23%  Similarity=0.246  Sum_probs=90.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC----------
Q 036363           19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF----------   88 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~----------   88 (240)
                      ..+|++.|.+++|||||++.|++..+-...  -+.+|......+... +...+.++||||+.|-.-...+          
T Consensus       168 ~pTivVaG~PNVGKSSlv~~lT~AkpEvA~--YPFTTK~i~vGhfe~-~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL  244 (346)
T COG1084         168 LPTIVVAGYPNVGKSSLVRKLTTAKPEVAP--YPFTTKGIHVGHFER-GYLRIQVIDTPGLLDRPLEERNEIERQAILAL  244 (346)
T ss_pred             CCeEEEecCCCCcHHHHHHHHhcCCCccCC--CCccccceeEeeeec-CCceEEEecCCcccCCChHHhcHHHHHHHHHH
Confidence            489999999999999999999998753222  245677777777777 7789999999999987655544          


Q ss_pred             -CCceEEEEEEECC--CCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           89 -DEIHAALVVFSVR--SRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        89 -~~~~~~l~v~~~~--~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                       .-.++++|++|++  ++++.++ ...++.+...|.    .|+++|+||.|...
T Consensus       245 ~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~----~p~v~V~nK~D~~~  294 (346)
T COG1084         245 RHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFK----APIVVVINKIDIAD  294 (346)
T ss_pred             HHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC----CCeEEEEecccccc
Confidence             7778899999998  6777665 577888887776    57999999999653

>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.65  E-value=6e-15  Score=108.04  Aligned_cols=117  Identities=17%  Similarity=0.171  Sum_probs=89.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEe-CCcEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363           19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLK-DGQVVNVIDTPGLFDFSAGSEF--DEIHAAL   95 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l   95 (240)
                      ..+|+|+|.+|+|||-|+.++.+.....+...+.|....  .....+. ....+.||||.|+..|.+....  +++|++|
T Consensus         9 lFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~--~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii   86 (205)
T KOG0084|consen    9 LFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFK--IRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   86 (205)
T ss_pred             EEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEE--EEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEE
Confidence            489999999999999999999998876665555544443  3444441 2347899999999999876666  9999999


Q ss_pred             EEEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363           96 VVFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        96 ~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~  139 (240)
                      +|+|++...|.+.. .++..+......  ..|.++|.||+|..+.
T Consensus        87 ~vyDiT~~~SF~~v~~Wi~Ei~~~~~~--~v~~lLVGNK~Dl~~~  129 (205)
T KOG0084|consen   87 FVYDITKQESFNNVKRWIQEIDRYASE--NVPKLLVGNKCDLTEK  129 (205)
T ss_pred             EEEEcccHHHhhhHHHHHHHhhhhccC--CCCeEEEeeccccHhh
Confidence            99999988888764 555566555433  2578999999996544

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.65  E-value=1.6e-15  Score=116.90  Aligned_cols=113  Identities=16%  Similarity=0.195  Sum_probs=78.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCcccc-----------------------------CCCCCcceeEEEEEEEEeCCcEE
Q 036363           21 TVVLVGHTGNGKSATGNSILGRRAFKSR-----------------------------ASSSGVTSTCEMHRTVLKDGQVV   71 (240)
Q Consensus        21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~-----------------------------~~~~~~t~~~~~~~~~~~~~~~~   71 (240)
                      +|+++|+.|+|||||+++|++.......                             ....+.|.......+.+ ++..+
T Consensus         1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~-~~~~~   79 (208)
T cd04166           1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFST-PKRKF   79 (208)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEec-CCceE
Confidence            5899999999999999999865432110                             01145566666666666 78899


Q ss_pred             EEEeCCCCCCCCCCCcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           72 NVIDTPGLFDFSAGSEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        72 ~l~DtpG~~~~~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      .++||||+.++......  ..+|++++|+|++.+........+..+. .++   .+++++|+||+|...
T Consensus        80 ~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~-~~~---~~~iIvviNK~D~~~  144 (208)
T cd04166          80 IIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILS-LLG---IRHVVVAVNKMDLVD  144 (208)
T ss_pred             EEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHH-HcC---CCcEEEEEEchhccc
Confidence            99999998765432222  7899999999998776666555444443 222   256788999999654

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>cd04140 ARHI_like ARHI subfamily

Probab=99.65  E-value=1.5e-15  Score=112.74  Aligned_cols=117  Identities=24%  Similarity=0.198  Sum_probs=78.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEEEEE
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAALVV   97 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~v   97 (240)
                      .+|+++|++|+|||||++++++........+..+.+. ........ ....+.+|||||...+......  ..+|++++|
T Consensus         2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~-~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   79 (165)
T cd04140           2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSK-NICTLQITDTTGSHQFPAMQRLSISKGHAFILV   79 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECC-EEEEEEEEECCCCCcchHHHHHHhhcCCEEEEE
Confidence            6899999999999999999998764333222222111 11111111 2346789999999887654433  789999999


Q ss_pred             EECCCCCCHHH-HHHHHHHHHHhCCC-cCCeEEEEEeCCCCCC
Q 036363           98 FSVRSRFSQEE-EATLHSLQTLFGKN-CFDYMIVVFSGRDELE  138 (240)
Q Consensus        98 ~~~~~~~~~~~-~~~l~~l~~~~~~~-~~~~~i~v~~~~D~~~  138 (240)
                      ++++++.+... ..++..+....+.. ...|+++|.||+|...
T Consensus        80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~  122 (165)
T cd04140          80 YSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESH  122 (165)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccc
Confidence            99997666654 44555565554322 3467999999999544

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>PRK00089 era GTPase Era; Reviewed

Probab=99.65  E-value=1.7e-15  Score=122.70  Aligned_cols=112  Identities=21%  Similarity=0.297  Sum_probs=77.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC----------C
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF----------D   89 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~----------~   89 (240)
                      ..|+++|++|||||||+|+|+|........  ...|...........++..+.++||||+.........          .
T Consensus         6 g~V~iiG~pn~GKSTLin~L~g~~~~~vs~--~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~   83 (292)
T PRK00089          6 GFVAIVGRPNVGKSTLLNALVGQKISIVSP--KPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLK   83 (292)
T ss_pred             EEEEEECCCCCCHHHHHHHHhCCceeecCC--CCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHHHh
Confidence            589999999999999999999986533222  2222222222222224568999999999875432111          7


Q ss_pred             CceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           90 EIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        90 ~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      .+|++++|+|+++.++..+...+..+..     ...|+++|+||+|...
T Consensus        84 ~~D~il~vvd~~~~~~~~~~~i~~~l~~-----~~~pvilVlNKiDl~~  127 (292)
T PRK00089         84 DVDLVLFVVDADEKIGPGDEFILEKLKK-----VKTPVILVLNKIDLVK  127 (292)
T ss_pred             cCCEEEEEEeCCCCCChhHHHHHHHHhh-----cCCCEEEEEECCcCCC
Confidence            8999999999997677766666665542     2357999999999763

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=99.65  E-value=1.5e-15  Score=113.31  Aligned_cols=116  Identities=17%  Similarity=0.149  Sum_probs=76.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCC-CCcC--CCceE
Q 036363           19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSA-GSEF--DEIHA   93 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~-~~~~--~~~~~   93 (240)
                      ..+|+++|++|+|||||++++++.........  ............+ ++  ..+.+|||||...+.. ....  ..+|+
T Consensus         2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~--t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~   78 (170)
T cd04115           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEA--TIGVDFRERTVEI-DGERIKVQLWDTAGQERFRKSMVQHYYRNVHA   78 (170)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCCcccc--ceeEEEEEEEEEE-CCeEEEEEEEeCCChHHHHHhhHHHhhcCCCE
Confidence            37899999999999999999987654322221  1112222223333 33  4678999999877642 2222  78999


Q ss_pred             EEEEEECCCCCCHHHHHHHH-HHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           94 ALVVFSVRSRFSQEEEATLH-SLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        94 ~l~v~~~~~~~~~~~~~~l~-~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      +++|+|++++.+......+. .+.... .....|+++|.||+|...
T Consensus        79 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~p~iiv~nK~Dl~~  123 (170)
T cd04115          79 VVFVYDVTNMASFHSLPSWIEECEQHS-LPNEVPRILVGNKCDLRE  123 (170)
T ss_pred             EEEEEECCCHHHHHhHHHHHHHHHHhc-CCCCCCEEEEEECccchh
Confidence            99999999766666644433 343332 223468999999999543

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd01894 EngA1 EngA1 subfamily

Probab=99.65  E-value=1e-15  Score=112.39  Aligned_cols=110  Identities=25%  Similarity=0.297  Sum_probs=79.1

Q ss_pred             EEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCC----------cCCCce
Q 036363           23 VLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGS----------EFDEIH   92 (240)
Q Consensus        23 ~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~----------~~~~~~   92 (240)
                      +++|.+|+|||||+|.|++........ ..+.|.........+ .+..+.+|||||+.+.....          ....+|
T Consensus         1 ~l~G~~~~GKssl~~~l~~~~~~~~~~-~~~~t~~~~~~~~~~-~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d   78 (157)
T cd01894           1 AIVGRPNVGKSTLFNRLTGRRDAIVED-TPGVTRDRIYGEAEW-GGREFILIDTGGIEPDDEGISKEIREQAELAIEEAD   78 (157)
T ss_pred             CccCCCCCCHHHHHHHHhCCcEEeecC-CCCceeCceeEEEEE-CCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCC
Confidence            589999999999999999875322222 234455555555556 67889999999998865410          017899


Q ss_pred             EEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363           93 AALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        93 ~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~  139 (240)
                      ++++|+++.++.+..+...+..+...     ..|+++|+||+|....
T Consensus        79 ~ii~v~d~~~~~~~~~~~~~~~~~~~-----~~piiiv~nK~D~~~~  120 (157)
T cd01894          79 VILFVVDGREGLTPADEEIAKYLRKS-----KKPVILVVNKVDNIKE  120 (157)
T ss_pred             EEEEEEeccccCCccHHHHHHHHHhc-----CCCEEEEEECcccCCh
Confidence            99999999876666666555555432     2679999999996543

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>cd01884 EF_Tu EF-Tu subfamily

Probab=99.65  E-value=1.1e-15  Score=116.22  Aligned_cols=115  Identities=19%  Similarity=0.258  Sum_probs=83.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccc--------------cCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCC
Q 036363           19 VRTVVLVGHTGNGKSATGNSILGRRAFKS--------------RASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSA   84 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~--------------~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~   84 (240)
                      ..+|+++|+.++|||||+++|++.....+              .....+.|.......+.+ ++..+.++||||+.++..
T Consensus         2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~-~~~~i~~iDtPG~~~~~~   80 (195)
T cd01884           2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYET-ANRHYAHVDCPGHADYIK   80 (195)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecC-CCeEEEEEECcCHHHHHH
Confidence            37899999999999999999986411000              011345666665555555 677899999999876543


Q ss_pred             CCcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           85 GSEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        85 ~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      ....  ..+|++++|+++..+....+...+..+... +   .+++++++||+|...
T Consensus        81 ~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~-~---~~~iIvviNK~D~~~  132 (195)
T cd01884          81 NMITGAAQMDGAILVVSATDGPMPQTREHLLLARQV-G---VPYIVVFLNKADMVD  132 (195)
T ss_pred             HHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHc-C---CCcEEEEEeCCCCCC
Confidence            3322  889999999999877888877777776532 2   245889999999763

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>cd01864 Rab19 Rab19 subfamily

Probab=99.64  E-value=1.5e-15  Score=112.75  Aligned_cols=115  Identities=15%  Similarity=0.207  Sum_probs=76.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAAL   95 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~l   95 (240)
                      .+|+++|++|+|||||++++.+...........+  .........+ ++  ..+.+|||||...+......  ..+|+++
T Consensus         4 ~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~--~~~~~~~~~~-~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~l   80 (165)
T cd01864           4 FKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIG--VDFTMKTLEI-EGKRVKLQIWDTAGQERFRTITQSYYRSANGAI   80 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCcccCCCccc--eEEEEEEEEE-CCEEEEEEEEECCChHHHHHHHHHHhccCCEEE
Confidence            7999999999999999999987654332222121  2222233444 44  36789999998766543333  7899999


Q ss_pred             EEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363           96 VVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        96 ~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~  139 (240)
                      +|++++++.+... ..++..+....  ....|+++|+||+|....
T Consensus        81 lv~d~~~~~s~~~~~~~~~~i~~~~--~~~~p~ivv~nK~Dl~~~  123 (165)
T cd01864          81 IAYDITRRSSFESVPHWIEEVEKYG--ASNVVLLLIGNKCDLEEQ  123 (165)
T ss_pred             EEEECcCHHHHHhHHHHHHHHHHhC--CCCCcEEEEEECcccccc
Confidence            9999986655554 34555554332  223678999999996543

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.64  E-value=3.9e-15  Score=113.53  Aligned_cols=114  Identities=19%  Similarity=0.313  Sum_probs=77.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCC-CccccC-------------CCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCC
Q 036363           19 VRTVVLVGHTGNGKSATGNSILGRR-AFKSRA-------------SSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSA   84 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g~~-~~~~~~-------------~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~   84 (240)
                      .++|+++|.+|+|||||++++++.. .+....             ...+.+.........+ ++..+.+|||||+.++..
T Consensus         2 ~r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~-~~~~~~l~DtpG~~~~~~   80 (194)
T cd01891           2 IRNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTY-KDTKINIVDTPGHADFGG   80 (194)
T ss_pred             ccEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEE-CCEEEEEEECCCcHHHHH
Confidence            4799999999999999999998621 111110             1133444444444555 677899999999988765


Q ss_pred             CCcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           85 GSEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        85 ~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      ....  ..+|++++|+|++++........+..+..   .  ..|+++|+||+|...
T Consensus        81 ~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~---~--~~p~iiv~NK~Dl~~  131 (194)
T cd01891          81 EVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALE---L--GLKPIVVINKIDRPD  131 (194)
T ss_pred             HHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHH---c--CCCEEEEEECCCCCC
Confidence            4433  88999999999986554444444444322   1  256899999999654

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.64  E-value=3.6e-15  Score=122.98  Aligned_cols=116  Identities=24%  Similarity=0.209  Sum_probs=80.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCC--c--------CC
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGS--E--------FD   89 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~--~--------~~   89 (240)
                      .+|+++|.+|+|||||+|+|++.....+..  .+.|.........++++..+.+|||||+....+..  .        ..
T Consensus       190 ~~ValvG~~NvGKSSLln~L~~~~~~v~~~--~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f~~tle~~~  267 (351)
T TIGR03156       190 PTVALVGYTNAGKSTLFNALTGADVYAADQ--LFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAFRATLEEVR  267 (351)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCceeeccC--CccccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHHHHHHHHHHH
Confidence            799999999999999999999976432222  34455555555555456789999999995422111  1        16


Q ss_pred             CceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           90 EIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        90 ~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      .+|++++|+|++++.+......+..+...++. ...|+++|+||+|...
T Consensus       268 ~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~-~~~piIlV~NK~Dl~~  315 (351)
T TIGR03156       268 EADLLLHVVDASDPDREEQIEAVEKVLEELGA-EDIPQLLVYNKIDLLD  315 (351)
T ss_pred             hCCEEEEEEECCCCchHHHHHHHHHHHHHhcc-CCCCEEEEEEeecCCC
Confidence            88999999999876666554444444444442 1367999999999654

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>cd01861 Rab6 Rab6 subfamily

Probab=99.64  E-value=5e-15  Score=109.37  Aligned_cols=113  Identities=15%  Similarity=0.158  Sum_probs=76.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEEEE
Q 036363           21 TVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAALV   96 (240)
Q Consensus        21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~l~   96 (240)
                      +|+++|++|+|||||++++++.....+..  ...+.........+ ++  ..+.+|||||...+......  ..+|++++
T Consensus         2 ki~liG~~~~GKSsli~~l~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~   78 (161)
T cd01861           2 KLVFLGDQSVGKTSIITRFMYDTFDNQYQ--ATIGIDFLSKTMYL-EDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV   78 (161)
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCccCC--CceeeeEEEEEEEE-CCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEE
Confidence            79999999999999999999876543322  22233333333334 33  35789999997766443333  88999999


Q ss_pred             EEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           97 VFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        97 v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      |++++++.+... ..++..+....+.  ..|+++++||+|...
T Consensus        79 v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~iilv~nK~D~~~  119 (161)
T cd01861          79 VYDITNRQSFDNTDKWIDDVRDERGN--DVIIVLVGNKTDLSD  119 (161)
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhCCC--CCEEEEEEEChhccc
Confidence            999986555544 3444444433221  368999999999644

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.64  E-value=2.9e-15  Score=111.43  Aligned_cols=111  Identities=23%  Similarity=0.179  Sum_probs=75.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEe---CCcEEEEEeCCCCCCCCCCCcC--CCceEE
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLK---DGQVVNVIDTPGLFDFSAGSEF--DEIHAA   94 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~~l~DtpG~~~~~~~~~~--~~~~~~   94 (240)
                      .+|+++|++|+|||||+++++.........    .|.........+.   ....+.+|||||...+......  ..+|++
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~----~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~   76 (166)
T cd00877           1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYV----ATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCA   76 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCC----CceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEE
Confidence            379999999999999999998654322211    1222222222211   2346789999999877655444  889999


Q ss_pred             EEEEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363           95 LVVFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDEL  137 (240)
Q Consensus        95 l~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~  137 (240)
                      ++|+|.+++.+.... .++..+....+   ..|+++|+||+|..
T Consensus        77 i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~piiiv~nK~Dl~  117 (166)
T cd00877          77 IIMFDVTSRVTYKNVPNWHRDLVRVCG---NIPIVLCGNKVDIK  117 (166)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhCC---CCcEEEEEEchhcc
Confidence            999999866665543 44455555433   47899999999954

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>cd04122 Rab14 Rab14 subfamily

Probab=99.64  E-value=6.7e-15  Score=109.39  Aligned_cols=114  Identities=18%  Similarity=0.214  Sum_probs=74.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAAL   95 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~l   95 (240)
                      .+|+++|+.|+|||||++++++...........+..  ........ ++  ..+.+|||||...+......  .++|+++
T Consensus         3 ~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~--~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i   79 (166)
T cd04122           3 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVE--FGTRIIEV-NGQKIKLQIWDTAGQERFRAVTRSYYRGAAGAL   79 (166)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCccccee--EEEEEEEE-CCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence            689999999999999999999875433222212211  11122223 33  36789999998776554433  8899999


Q ss_pred             EEEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           96 VVFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        96 ~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      +|+|++++.+.... .++..+....  ....|+++|.||+|...
T Consensus        80 lv~d~~~~~s~~~~~~~~~~~~~~~--~~~~~iiiv~nK~Dl~~  121 (166)
T cd04122          80 MVYDITRRSTYNHLSSWLTDARNLT--NPNTVIFLIGNKADLEA  121 (166)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhC--CCCCeEEEEEECccccc
Confidence            99999976555543 3333333321  12367999999999543

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=99.64  E-value=6e-15  Score=108.86  Aligned_cols=114  Identities=23%  Similarity=0.239  Sum_probs=74.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAAL   95 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~l   95 (240)
                      .+|+++|++|+|||||++++++...........+..   ....... ++  ..+.+|||||...+......  ...|+++
T Consensus         2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~---~~~~~~~-~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i   77 (162)
T cd04138           2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDS---YRKQVVI-DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL   77 (162)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchhe---EEEEEEE-CCEEEEEEEEECCCCcchHHHHHHHHhcCCEEE
Confidence            589999999999999999999876432222211111   1122233 33  34678999998776554443  7899999


Q ss_pred             EEEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           96 VVFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        96 ~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      +|++.+++.+..+. .++..+..... ....|+++|+||+|...
T Consensus        78 ~v~~~~~~~s~~~~~~~~~~i~~~~~-~~~~piivv~nK~Dl~~  120 (162)
T cd04138          78 CVFAINSRKSFEDIHTYREQIKRVKD-SDDVPMVLVGNKCDLAA  120 (162)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccc
Confidence            99999865554443 33444444322 22367999999999554

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>cd01866 Rab2 Rab2 subfamily

Probab=99.63  E-value=2.6e-15  Score=111.88  Aligned_cols=114  Identities=18%  Similarity=0.174  Sum_probs=75.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAAL   95 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~l   95 (240)
                      .+|+++|++|+|||||++++++...........+.+..  ...... ++  ..+.+|||||...+......  ..+|+++
T Consensus         5 ~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~--~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il   81 (168)
T cd01866           5 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFG--ARMITI-DGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL   81 (168)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEE--EEEEEE-CCEEEEEEEEECCCcHHHHHHHHHHhccCCEEE
Confidence            79999999999999999999987653333322222222  222223 32  36789999997765443332  7899999


Q ss_pred             EEEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           96 VVFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        96 ~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      +|+|++++.+.... .++..+.....  ...|+++|.||.|...
T Consensus        82 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~pvivv~nK~Dl~~  123 (168)
T cd01866          82 LVYDITRRETFNHLTSWLEDARQHSN--SNMTIMLIGNKCDLES  123 (168)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEECccccc
Confidence            99999855554442 33333433321  2367999999999653

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.63  E-value=4.4e-14  Score=107.82  Aligned_cols=113  Identities=15%  Similarity=0.272  Sum_probs=74.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC---------
Q 036363           18 GVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF---------   88 (240)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~---------   88 (240)
                      ...+|+++|++|+|||||+|+|++...........+.|.......    .+..+.+|||||+.........         
T Consensus        23 ~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~----~~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~   98 (196)
T PRK00454         23 DGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFE----VNDKLRLVDLPGYGYAKVSKEEKEKWQKLIE   98 (196)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEe----cCCeEEEeCCCCCCCcCCCchHHHHHHHHHH
Confidence            448999999999999999999998642222222334444433322    2467899999997653221110         


Q ss_pred             ------CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363           89 ------DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        89 ------~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~  139 (240)
                            ...+++++|++.+.+.+..+...++.+.. .    ..++++++||+|.+..
T Consensus        99 ~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~-~----~~~~iiv~nK~Dl~~~  150 (196)
T PRK00454         99 EYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKE-Y----GIPVLIVLTKADKLKK  150 (196)
T ss_pred             HHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHH-c----CCcEEEEEECcccCCH
Confidence                  34578888888876676666555555432 1    2568999999997654

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=99.63  E-value=1.3e-14  Score=110.92  Aligned_cols=111  Identities=22%  Similarity=0.232  Sum_probs=75.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCc---ceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC-------C
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGV---TSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF-------D   89 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~---t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~-------~   89 (240)
                      .+|+++|++|+|||||+|+|+|...+..+....+.   +.....  +.......+.+|||||+.........       .
T Consensus         2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~   79 (197)
T cd04104           2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTP--YPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFS   79 (197)
T ss_pred             eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCcee--eecCCCCCceEEeCCCCCcccCCHHHHHHHhCcc
Confidence            68999999999999999999997654433332221   222211  11112346889999999765332221       5


Q ss_pred             CceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363           90 EIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        90 ~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~  139 (240)
                      ..|++++|.+  .+++..+...++.+... +    .++++|+||+|...+
T Consensus        80 ~~d~~l~v~~--~~~~~~d~~~~~~l~~~-~----~~~ilV~nK~D~~~~  122 (197)
T cd04104          80 EYDFFIIISS--TRFSSNDVKLAKAIQCM-G----KKFYFVRTKVDRDLS  122 (197)
T ss_pred             CcCEEEEEeC--CCCCHHHHHHHHHHHHh-C----CCEEEEEecccchhh
Confidence            6788888743  47888888888888654 2    568999999998644

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>cd04163 Era Era subfamily

Probab=99.63  E-value=5.3e-15  Score=109.41  Aligned_cols=111  Identities=20%  Similarity=0.229  Sum_probs=75.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCc----------CC
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSE----------FD   89 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~----------~~   89 (240)
                      .+|+++|++|+|||||+|.++|......... ...+.......... .+..+.+|||||+........          ..
T Consensus         4 ~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   81 (168)
T cd04163           4 GFVAIVGRPNVGKSTLLNALVGQKISIVSPK-PQTTRNRIRGIYTD-DDAQIIFVDTPGIHKPKKKLGERMVKAAWSALK   81 (168)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCceEeccCC-CCceeceEEEEEEc-CCeEEEEEECCCCCcchHHHHHHHHHHHHHHHH
Confidence            7899999999999999999999764322221 12222222222222 456789999999986643321          18


Q ss_pred             CceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363           90 EIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDEL  137 (240)
Q Consensus        90 ~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~  137 (240)
                      .+|++++|+++++..+......+..+...     ..|+++|+||+|..
T Consensus        82 ~~d~i~~v~d~~~~~~~~~~~~~~~~~~~-----~~~~iiv~nK~Dl~  124 (168)
T cd04163          82 DVDLVLFVVDASEPIGEGDEFILELLKKS-----KTPVILVLNKIDLV  124 (168)
T ss_pred             hCCEEEEEEECCCccCchHHHHHHHHHHh-----CCCEEEEEEchhcc
Confidence            88999999999966555555555555432     25789999999965

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>cd04168 TetM_like Tet(M)-like subfamily

Probab=99.63  E-value=2.4e-15  Score=117.78  Aligned_cols=113  Identities=23%  Similarity=0.272  Sum_probs=82.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCccc--c--------------CCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCC
Q 036363           21 TVVLVGHTGNGKSATGNSILGRRAFKS--R--------------ASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSA   84 (240)
Q Consensus        21 ~i~lvG~~g~GKSTlin~l~g~~~~~~--~--------------~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~   84 (240)
                      +|+++|+.|+|||||+++|+.......  +              ....+.+.........+ ++..+++|||||+.++..
T Consensus         1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~-~~~~i~liDTPG~~~f~~   79 (237)
T cd04168           1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQW-EDTKVNLIDTPGHMDFIA   79 (237)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEE-CCEEEEEEeCCCccchHH
Confidence            489999999999999999986432111  0              01224445555666677 888999999999988765


Q ss_pred             CCcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363           85 GSEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        85 ~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~  139 (240)
                      ....  ..+|++++|+++..+........+..+...     ..|+++++||+|....
T Consensus        80 ~~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~-----~~P~iivvNK~D~~~a  131 (237)
T cd04168          80 EVERSLSVLDGAILVISAVEGVQAQTRILWRLLRKL-----NIPTIIFVNKIDRAGA  131 (237)
T ss_pred             HHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHc-----CCCEEEEEECccccCC
Confidence            4333  889999999999987777766777766432     2568899999996543

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>PTZ00369 Ras-like protein; Provisional

Probab=99.63  E-value=3e-14  Score=108.20  Aligned_cols=113  Identities=24%  Similarity=0.207  Sum_probs=76.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAAL   95 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~l   95 (240)
                      .+|+++|.+|+|||||++++++........++.+.+.   ...... ++  ..+.+|||||..++......  ..+|+++
T Consensus         6 ~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~---~~~~~~-~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~ii   81 (189)
T PTZ00369          6 YKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY---RKQCVI-DEETCLLDILDTAGQEEYSAMRDQYMRTGQGFL   81 (189)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE---EEEEEE-CCEEEEEEEEeCCCCccchhhHHHHhhcCCEEE
Confidence            8999999999999999999998764333222222111   112223 33  35678999999887766544  8899999


Q ss_pred             EEEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363           96 VVFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDEL  137 (240)
Q Consensus        96 ~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~  137 (240)
                      +|+|++++.+.... .++..+..... ....|+++|.||+|..
T Consensus        82 lv~D~s~~~s~~~~~~~~~~i~~~~~-~~~~piiiv~nK~Dl~  123 (189)
T PTZ00369         82 CVYSITSRSSFEEIASFREQILRVKD-KDRVPMILVGNKCDLD  123 (189)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccc
Confidence            99999866665543 34444444322 2245799999999943

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.63  E-value=4.9e-15  Score=125.58  Aligned_cols=110  Identities=18%  Similarity=0.242  Sum_probs=80.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCc----------CC
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSE----------FD   89 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~----------~~   89 (240)
                      .+|+++|++|+|||||+|+|++........ ..++|.........+ ++..+.+|||||+.++.....          ..
T Consensus       204 ~kVvIvG~~nvGKSSLiN~L~~~~~aivs~-~pgtTrd~~~~~i~~-~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~~  281 (442)
T TIGR00450       204 FKLAIVGSPNVGKSSLLNALLKQDRAIVSD-IKGTTRDVVEGDFEL-NGILIKLLDTAGIREHADFVERLGIEKSFKAIK  281 (442)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCCCcccCC-CCCcEEEEEEEEEEE-CCEEEEEeeCCCcccchhHHHHHHHHHHHHHHh
Confidence            899999999999999999999875422222 245566665566666 788899999999976543221          17


Q ss_pred             CceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363           90 EIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDEL  137 (240)
Q Consensus        90 ~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~  137 (240)
                      .+|++++|+|++++.+..+. ++..+..     ...|+++|+||+|..
T Consensus       282 ~aD~il~V~D~s~~~s~~~~-~l~~~~~-----~~~piIlV~NK~Dl~  323 (442)
T TIGR00450       282 QADLVIYVLDASQPLTKDDF-LIIDLNK-----SKKPFILVLNKIDLK  323 (442)
T ss_pred             hCCEEEEEEECCCCCChhHH-HHHHHhh-----CCCCEEEEEECccCC
Confidence            89999999999977776654 4433321     135799999999964

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>COG0218 Predicted GTPase [General function prediction only]

Probab=99.63  E-value=6e-15  Score=109.40  Aligned_cols=115  Identities=17%  Similarity=0.262  Sum_probs=88.0

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--------
Q 036363           17 NGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--------   88 (240)
Q Consensus        17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--------   88 (240)
                      ....-|+++|.+++|||||||+|+|......-..++|.|....++...   + .+.++|.||+.-.......        
T Consensus        22 ~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~---~-~~~lVDlPGYGyAkv~k~~~e~w~~~i   97 (200)
T COG0218          22 DDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVD---D-ELRLVDLPGYGYAKVPKEVKEKWKKLI   97 (200)
T ss_pred             CCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEec---C-cEEEEeCCCcccccCCHHHHHHHHHHH
Confidence            344799999999999999999999976433333456777777766542   2 3789999998865543322        


Q ss_pred             -------CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCC
Q 036363           89 -------DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEAN  140 (240)
Q Consensus        89 -------~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~  140 (240)
                             ....+++.++|+.......|.+.++++...     ..|+++|+||+|++...
T Consensus        98 ~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~-----~i~~~vv~tK~DKi~~~  151 (200)
T COG0218          98 EEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLEL-----GIPVIVVLTKADKLKKS  151 (200)
T ss_pred             HHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHc-----CCCeEEEEEccccCChh
Confidence                   568889999999988888899888888643     36799999999999764

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.63  E-value=3.8e-15  Score=114.36  Aligned_cols=114  Identities=18%  Similarity=0.232  Sum_probs=74.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCC-ccccCCCCCcceeEEEEEEEEe--------------------------CC-----
Q 036363           21 TVVLVGHTGNGKSATGNSILGRRA-FKSRASSSGVTSTCEMHRTVLK--------------------------DG-----   68 (240)
Q Consensus        21 ~i~lvG~~g~GKSTlin~l~g~~~-~~~~~~~~~~t~~~~~~~~~~~--------------------------~~-----   68 (240)
                      +|+++|++|+|||||+.+|++... ...+....+.+..+.+..+.|.                          .+     
T Consensus         2 ~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (203)
T cd01888           2 NIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETKL   81 (203)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCcccc
Confidence            799999999999999999988732 2223333444444444443331                          02     


Q ss_pred             -cEEEEEeCCCCCCCCCCCcC--CCceEEEEEEECCCC-CCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           69 -QVVNVIDTPGLFDFSAGSEF--DEIHAALVVFSVRSR-FSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        69 -~~~~l~DtpG~~~~~~~~~~--~~~~~~l~v~~~~~~-~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                       ..+.+|||||+.++......  ..+|++++|+|++.+ ........+..+.. .+   .+|+++|+||+|...
T Consensus        82 ~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~-~~---~~~iiivvNK~Dl~~  151 (203)
T cd01888          82 VRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEI-MG---LKHIIIVQNKIDLVK  151 (203)
T ss_pred             ccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHH-cC---CCcEEEEEEchhccC
Confidence             67899999997665332222  778999999999853 33444445544422 22   257899999999654

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.63  E-value=2.8e-15  Score=127.82  Aligned_cols=112  Identities=25%  Similarity=0.282  Sum_probs=86.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC----------CC
Q 036363           21 TVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF----------DE   90 (240)
Q Consensus        21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~----------~~   90 (240)
                      +|+++|.+|+|||||+|+|++....... ...+.|....+....+ .+..+.+|||||+.........          ..
T Consensus         1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~-~~~g~t~d~~~~~~~~-~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~   78 (429)
T TIGR03594         1 VVAIVGRPNVGKSTLFNRLTGKRDAIVS-DTPGVTRDRKYGDAEW-GGREFILIDTGGIEEDDDGLDKQIREQAEIAIEE   78 (429)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCCcceec-CCCCcccCceEEEEEE-CCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence            4899999999999999999997642222 2356677777777778 8889999999998643221111          78


Q ss_pred             ceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363           91 IHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        91 ~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~  139 (240)
                      +|++++|+|+..+.+..+......+.+.     ..|+++|+||+|....
T Consensus        79 ad~vl~vvD~~~~~~~~d~~i~~~l~~~-----~~piilVvNK~D~~~~  122 (429)
T TIGR03594        79 ADVILFVVDGREGLTPEDEEIAKWLRKS-----GKPVILVANKIDGKKE  122 (429)
T ss_pred             CCEEEEEEeCCCCCCHHHHHHHHHHHHh-----CCCEEEEEECccCCcc
Confidence            9999999999988888887777777642     2579999999996543

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>cd04113 Rab4 Rab4 subfamily

Probab=99.63  E-value=8.4e-15  Score=108.24  Aligned_cols=114  Identities=19%  Similarity=0.212  Sum_probs=75.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAAL   95 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~l   95 (240)
                      .+|+++|++|+|||||++.+++...........+  .......... ++  ..+.+|||||...+......  ..+|+++
T Consensus         1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i   77 (161)
T cd04113           1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIG--VEFGSKIIRV-GGKRVKLQIWDTAGQERFRSVTRSYYRGAAGAL   77 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee--eeEEEEEEEE-CCEEEEEEEEECcchHHHHHhHHHHhcCCCEEE
Confidence            3799999999999999999998764333222222  1111122222 23  46789999998766544333  8899999


Q ss_pred             EEEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           96 VVFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        96 ~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      +|+|++++.+.... .++..+.....  ...|+++++||+|...
T Consensus        78 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iivv~nK~D~~~  119 (161)
T cd04113          78 LVYDITNRTSFEALPTWLSDARALAS--PNIVVILVGNKSDLAD  119 (161)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEEchhcch
Confidence            99999976655543 33344433322  2367999999999654

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>cd04136 Rap_like Rap-like subfamily

Probab=99.63  E-value=3.7e-15  Score=110.24  Aligned_cols=114  Identities=19%  Similarity=0.198  Sum_probs=75.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAAL   95 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~l   95 (240)
                      .+|+++|++|+|||||++++++...........+   ......... ++  ..+.+|||||...+......  ..+|+++
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~---~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i   77 (163)
T cd04136           2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE---DSYRKQIEV-DGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFV   77 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh---hhEEEEEEE-CCEEEEEEEEECCCccccchHHHHHhhcCCEEE
Confidence            6899999999999999999997654322211111   111122223 33  35678999999887665444  8899999


Q ss_pred             EEEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           96 VVFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        96 ~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      +|+++++..+..+. .++..+...... ...|+++|+||+|...
T Consensus        78 lv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~  120 (163)
T cd04136          78 LVYSITSQSSFNDLQDLREQILRVKDT-ENVPMVLVGNKCDLED  120 (163)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccccc
Confidence            99999866555543 344445443222 2367999999999543

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd01865 Rab3 Rab3 subfamily

Probab=99.63  E-value=3.9e-15  Score=110.55  Aligned_cols=114  Identities=11%  Similarity=0.097  Sum_probs=74.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAAL   95 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~l   95 (240)
                      .+|+++|+.|+|||||++++++........++.+.  ......... ++  ..+.+|||||...+......  ..+|+++
T Consensus         2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~--~~~~~~~~~-~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l   78 (165)
T cd01865           2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGI--DFKVKTVFR-NDKRVKLQIWDTAGQERYRTITTAYYRGAMGFI   78 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceee--EEEEEEEEE-CCEEEEEEEEECCChHHHHHHHHHHccCCcEEE
Confidence            68999999999999999999987643222222221  111122222 32  46789999998766544333  8999999


Q ss_pred             EEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           96 VVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        96 ~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      +|+|.+++.+... ..++..+.....  ...|+++|+||+|...
T Consensus        79 ~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piivv~nK~Dl~~  120 (165)
T cd01865          79 LMYDITNEESFNAVQDWSTQIKTYSW--DNAQVILVGNKCDMED  120 (165)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhCC--CCCCEEEEEECcccCc
Confidence            9999986544443 233444433221  2367999999999644

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.63  E-value=1.9e-15  Score=112.35  Aligned_cols=111  Identities=17%  Similarity=0.202  Sum_probs=76.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEe--CCcEEEEEeCCCCCCCCCCCcC--CCceEEEE
Q 036363           21 TVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLK--DGQVVNVIDTPGLFDFSAGSEF--DEIHAALV   96 (240)
Q Consensus        21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~   96 (240)
                      .|+++|++|+|||||+|+|++......  ...+.|...........  .+..+.+|||||...+......  ..+|++++
T Consensus         2 ~i~iiG~~~~GKtsli~~l~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~   79 (168)
T cd01887           2 VVTVMGHVDHGKTTLLDKIRKTNVAAG--EAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAIL   79 (168)
T ss_pred             EEEEEecCCCCHHHHHHHHHhcccccc--cCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEE
Confidence            599999999999999999998654322  12234444443444441  2568899999998765433332  78999999


Q ss_pred             EEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           97 VFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        97 v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      |+++++.........+..+..     ...|+++|+||+|...
T Consensus        80 v~d~~~~~~~~~~~~~~~~~~-----~~~p~ivv~NK~Dl~~  116 (168)
T cd01887          80 VVAADDGVMPQTIEAIKLAKA-----ANVPFIVALNKIDKPN  116 (168)
T ss_pred             EEECCCCccHHHHHHHHHHHH-----cCCCEEEEEEceeccc
Confidence            999986665555555555432     1257999999999653

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.63  E-value=2.4e-15  Score=111.80  Aligned_cols=116  Identities=14%  Similarity=0.059  Sum_probs=74.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCccccCC--CCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEEEE
Q 036363           21 TVVLVGHTGNGKSATGNSILGRRAFKSRAS--SSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAALV   96 (240)
Q Consensus        21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~   96 (240)
                      +|+++|++|+|||||++.|++......+..  ....|.........+ ++..+.+|||||+..+......  ..+|++++
T Consensus         1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~   79 (167)
T cd04160           1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEV-GNARLKFWDLGGQESLRSLWDKYYAECHAIIY   79 (167)
T ss_pred             CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEE-CCEEEEEEECCCChhhHHHHHHHhCCCCEEEE
Confidence            589999999999999999987543211111  122333334444555 6788999999999876554333  88999999


Q ss_pred             EEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           97 VFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        97 v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      |+|+++..+... ...+..+..... ....|+++++||+|...
T Consensus        80 vvd~~~~~~~~~~~~~~~~~~~~~~-~~~~p~ilv~NK~D~~~  121 (167)
T cd04160          80 VIDSTDRERFEESKSALEKVLRNEA-LEGVPLLILANKQDLPD  121 (167)
T ss_pred             EEECchHHHHHHHHHHHHHHHhChh-hcCCCEEEEEEcccccc
Confidence            999985433222 223333322111 12367999999999543

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=99.63  E-value=6e-15  Score=114.50  Aligned_cols=116  Identities=17%  Similarity=0.098  Sum_probs=78.3

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEe-CCcEEEEEeCCCCCCCCCCCcC--CCceE
Q 036363           17 NGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLK-DGQVVNVIDTPGLFDFSAGSEF--DEIHA   93 (240)
Q Consensus        17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~--~~~~~   93 (240)
                      ....+|+++|..|+|||||+++++............+.+...  ...... ....+.+|||||...+......  ..+|+
T Consensus        11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~--~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~   88 (219)
T PLN03071         11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHP--LDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC   88 (219)
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEE--EEEEECCeEEEEEEEECCCchhhhhhhHHHcccccE
Confidence            344899999999999999999987655432222222222221  122221 2347889999999887665544  88999


Q ss_pred             EEEEEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363           94 ALVVFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDEL  137 (240)
Q Consensus        94 ~l~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~  137 (240)
                      +|+|+|++++.+.... .++..+.....   ..|+++|+||+|..
T Consensus        89 ~ilvfD~~~~~s~~~i~~w~~~i~~~~~---~~piilvgNK~Dl~  130 (219)
T PLN03071         89 AIIMFDVTARLTYKNVPTWHRDLCRVCE---NIPIVLCGNKVDVK  130 (219)
T ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHHhCC---CCcEEEEEEchhhh
Confidence            9999999977666653 44455554322   36799999999953

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=99.62  E-value=4.3e-15  Score=113.93  Aligned_cols=116  Identities=13%  Similarity=0.060  Sum_probs=76.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEe--CCcEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLK--DGQVVNVIDTPGLFDFSAGSEF--DEIHAAL   95 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l   95 (240)
                      .+|+++|++|+|||||++++++.........+.  ........+.+.  ....+.+|||||...+......  ..+|+++
T Consensus         1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~--~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~i   78 (201)
T cd04107           1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATI--GVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAI   78 (201)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCce--eEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEE
Confidence            379999999999999999999875432222111  111222223331  1346789999999777654444  8999999


Q ss_pred             EEEECCCCCCHHHHH-HHHHHHHHhC--CCcCCeEEEEEeCCCCC
Q 036363           96 VVFSVRSRFSQEEEA-TLHSLQTLFG--KNCFDYMIVVFSGRDEL  137 (240)
Q Consensus        96 ~v~~~~~~~~~~~~~-~l~~l~~~~~--~~~~~~~i~v~~~~D~~  137 (240)
                      +|+|++++.+..... ++..+...+.  .....|+++|+||.|..
T Consensus        79 lv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~  123 (201)
T cd04107          79 IVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLK  123 (201)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcc
Confidence            999998766666543 3334433221  12346899999999954

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.62  E-value=5.3e-15  Score=127.15  Aligned_cols=113  Identities=26%  Similarity=0.273  Sum_probs=85.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCc----------
Q 036363           18 GVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSE----------   87 (240)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~----------   87 (240)
                      ...+|+|||.+|+|||||+|+|++....... ...+.|....+....+ .+..+.+|||||+........          
T Consensus        37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~-~~~gvT~d~~~~~~~~-~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~  114 (472)
T PRK03003         37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVE-DVPGVTRDRVSYDAEW-NGRRFTVVDTGGWEPDAKGLQASVAEQAEVA  114 (472)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCcCccccc-CCCCCCEeeEEEEEEE-CCcEEEEEeCCCcCCcchhHHHHHHHHHHHH
Confidence            3478999999999999999999987643222 3456666666666667 788899999999874322111          


Q ss_pred             CCCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363           88 FDEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDEL  137 (240)
Q Consensus        88 ~~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~  137 (240)
                      ...+|++|+|+|++++.+..+..+...+..     ...|+++|+||+|..
T Consensus       115 ~~~aD~il~VvD~~~~~s~~~~~i~~~l~~-----~~~piilV~NK~Dl~  159 (472)
T PRK03003        115 MRTADAVLFVVDATVGATATDEAVARVLRR-----SGKPVILAANKVDDE  159 (472)
T ss_pred             HHhCCEEEEEEECCCCCCHHHHHHHHHHHH-----cCCCEEEEEECccCC
Confidence            078999999999998888777666666653     236799999999964

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.62  E-value=2.1e-14  Score=106.55  Aligned_cols=109  Identities=14%  Similarity=0.163  Sum_probs=74.3

Q ss_pred             EEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEEEEEEE
Q 036363           22 VVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAALVVFS   99 (240)
Q Consensus        22 i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~v~~   99 (240)
                      |+++|++|+|||||++.+++........+..+.    ....... .+..+.+|||||...+...+..  .++|++++|+|
T Consensus         2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~----~~~~i~~-~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D   76 (164)
T cd04162           2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGF----NSVAIPT-QDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVD   76 (164)
T ss_pred             EEEECCCCCCHHHHHHHHhcCCCcccccccCCc----ceEEEee-CCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEE
Confidence            789999999999999999987543322222221    1223334 5678899999999877655444  89999999999


Q ss_pred             CCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363          100 VRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus       100 ~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      .+++.+... +..+..+.   ......|+++|.||.|...
T Consensus        77 ~t~~~s~~~~~~~l~~~~---~~~~~~piilv~NK~Dl~~  113 (164)
T cd04162          77 SADSERLPLARQELHQLL---QHPPDLPLVVLANKQDLPA  113 (164)
T ss_pred             CCCHHHHHHHHHHHHHHH---hCCCCCcEEEEEeCcCCcC
Confidence            986554433 23333332   2223478999999999543

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.62  E-value=9.6e-15  Score=110.59  Aligned_cols=112  Identities=22%  Similarity=0.237  Sum_probs=79.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCccccCC--------------CCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCC
Q 036363           21 TVVLVGHTGNGKSATGNSILGRRAFKSRAS--------------SSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGS   86 (240)
Q Consensus        21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~--------------~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~   86 (240)
                      +|+++|.+|+|||||+|+|++.........              ..+.+.........+ .+..+.+|||||+.++....
T Consensus         1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~   79 (189)
T cd00881           1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEW-PDRRVNFIDTPGHEDFSSEV   79 (189)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEee-CCEEEEEEeCCCcHHHHHHH
Confidence            489999999999999999998765432211              112333434444445 56788999999987654333


Q ss_pred             cC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           87 EF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        87 ~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      ..  ..+|++++|+|+....+......+..+..     ...|+++|+||+|...
T Consensus        80 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~-----~~~~i~iv~nK~D~~~  128 (189)
T cd00881          80 IRGLSVSDGAILVVDANEGVQPQTREHLRIARE-----GGLPIIVAINKIDRVG  128 (189)
T ss_pred             HHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHH-----CCCCeEEEEECCCCcc
Confidence            22  78999999999987776666666655543     2367999999999775

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.62  E-value=1.6e-14  Score=123.39  Aligned_cols=114  Identities=18%  Similarity=0.204  Sum_probs=86.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC---------
Q 036363           18 GVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF---------   88 (240)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~---------   88 (240)
                      ...+|+++|++|+|||||+|+|++......+. ..+.|.........+ ++..+.++||||+.........         
T Consensus       172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~-~~gtt~~~~~~~~~~-~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~  249 (435)
T PRK00093        172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSD-IAGTTRDSIDTPFER-DGQKYTLIDTAGIRRKGKVTEGVEKYSVIRT  249 (435)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCceeecC-CCCceEEEEEEEEEE-CCeeEEEEECCCCCCCcchhhHHHHHHHHHH
Confidence            34899999999999999999999876433332 245555554444555 7788999999998765443211         


Q ss_pred             ----CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           89 ----DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        89 ----~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                          ..+|++++|+|++.+.+..+...+..+.+.     ..|+++|+||+|...
T Consensus       250 ~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~-----~~~~ivv~NK~Dl~~  298 (435)
T PRK00093        250 LKAIERADVVLLVIDATEGITEQDLRIAGLALEA-----GRALVIVVNKWDLVD  298 (435)
T ss_pred             HHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHc-----CCcEEEEEECccCCC
Confidence                678999999999988999888777766532     257999999999663

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=99.62  E-value=1.9e-15  Score=120.42  Aligned_cols=144  Identities=19%  Similarity=0.302  Sum_probs=100.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCccc----------------cCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCC
Q 036363           21 TVVLVGHTGNGKSATGNSILGRRAFKS----------------RASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSA   84 (240)
Q Consensus        21 ~i~lvG~~g~GKSTlin~l~g~~~~~~----------------~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~   84 (240)
                      +|+++|+.|+|||||+++|+.......                .....+.|.......+.| ++..++++||||+.++..
T Consensus         1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~-~~~~i~liDTPG~~df~~   79 (270)
T cd01886           1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFW-KDHRINIIDTPGHVDFTI   79 (270)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEE-CCEEEEEEECCCcHHHHH
Confidence            589999999999999999974221100                112346677777777888 889999999999987765


Q ss_pred             CCcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCCc----ccHHHHhcccC------
Q 036363           85 GSEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEAND----ETLEDYLGREC------  152 (240)
Q Consensus        85 ~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~~----~~~~~~~~~~~------  152 (240)
                      ....  ..+|++++|+|+..+....+...+..+...     ..|+++++||+|....+.    ..+.+.+....      
T Consensus        80 ~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~-----~~p~ivviNK~D~~~a~~~~~~~~l~~~l~~~~~~~~~P  154 (270)
T cd01886          80 EVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRY-----NVPRIAFVNKMDRTGADFFRVVEQIREKLGANPVPLQLP  154 (270)
T ss_pred             HHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHc-----CCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCceEEEec
Confidence            4433  888999999999988887777777766432     256889999999664331    22333332210      


Q ss_pred             ---CchHHHHHHHhCCcEEEE
Q 036363          153 ---PKPLKEILHLFDNRCVLF  170 (240)
Q Consensus       153 ---~~~~~~~~~~~~~~~~~~  170 (240)
                         ...++++++....+.+.|
T Consensus       155 isa~~~f~g~vd~~~~~a~~~  175 (270)
T cd01886         155 IGEEDDFRGVVDLIEMKALYW  175 (270)
T ss_pred             cccCCCceEEEEccccEEEec
Confidence               234566677777777777

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>cd04169 RF3 RF3 subfamily

Probab=99.62  E-value=6e-15  Score=117.44  Aligned_cols=146  Identities=19%  Similarity=0.250  Sum_probs=96.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccc--cCC------------------CCCcceeEEEEEEEEeCCcEEEEEeCCC
Q 036363           19 VRTVVLVGHTGNGKSATGNSILGRRAFKS--RAS------------------SSGVTSTCEMHRTVLKDGQVVNVIDTPG   78 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~--~~~------------------~~~~t~~~~~~~~~~~~~~~~~l~DtpG   78 (240)
                      .++|+++|+.|+|||||+++|+.......  +..                  ..+.+.......+.| ++..+++|||||
T Consensus         2 ~Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~-~~~~i~liDTPG   80 (267)
T cd04169           2 RRTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEY-RDCVINLLDTPG   80 (267)
T ss_pred             ccEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEee-CCEEEEEEECCC
Confidence            37999999999999999999985322111  100                  123444555566777 889999999999


Q ss_pred             CCCCCCCCcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCCc----ccHHHHhccc-
Q 036363           79 LFDFSAGSEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEAND----ETLEDYLGRE-  151 (240)
Q Consensus        79 ~~~~~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~~----~~~~~~~~~~-  151 (240)
                      +.++......  ..+|++++|++++.+........++.+..     ...|+++++||+|......    ..+.+.+... 
T Consensus        81 ~~df~~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~-----~~~P~iivvNK~D~~~a~~~~~~~~l~~~l~~~~  155 (267)
T cd04169          81 HEDFSEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRL-----RGIPIITFINKLDREGRDPLELLDEIEEELGIDC  155 (267)
T ss_pred             chHHHHHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHh-----cCCCEEEEEECCccCCCCHHHHHHHHHHHHCCCc
Confidence            9877543222  78999999999987776665565554432     1256899999999654431    2233332221 


Q ss_pred             --------CCchHHHHHHHhCCcEEEE
Q 036363          152 --------CPKPLKEILHLFDNRCVLF  170 (240)
Q Consensus       152 --------~~~~~~~~~~~~~~~~~~~  170 (240)
                              ....+.++++....+.+.|
T Consensus       156 ~~~~~Pi~~~~~~~g~vd~~~~~a~~~  182 (267)
T cd04169         156 TPLTWPIGMGKDFKGVYDRRTGEVELY  182 (267)
T ss_pred             eeEEecccCCCceEEEEEhhhCEEEEe
Confidence                    1234466667777777877

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.62  E-value=1.9e-14  Score=122.80  Aligned_cols=112  Identities=17%  Similarity=0.194  Sum_probs=85.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC----------
Q 036363           19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF----------   88 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~----------   88 (240)
                      ..+|+++|.+|+|||||+|+|++........ ..++|.........+ ++..+.+|||||+.........          
T Consensus       172 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~-~~gtt~~~~~~~~~~-~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~  249 (429)
T TIGR03594       172 PIKIAIIGRPNVGKSTLVNALLGEERVIVSD-IAGTTRDSIDIPFER-NGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTL  249 (429)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHCCCeeecCC-CCCceECcEeEEEEE-CCcEEEEEECCCccccccchhhHHHHHHHHHH
Confidence            4789999999999999999999976432222 244555544445555 6778999999999776543311          


Q ss_pred             ---CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363           89 ---DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDEL  137 (240)
Q Consensus        89 ---~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~  137 (240)
                         ..+|++++|+|+.++.+..+...+..+.+.     ..|+++|+||+|.+
T Consensus       250 ~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~-----~~~iiiv~NK~Dl~  296 (429)
T TIGR03594       250 KAIERADVVLLVLDATEGITEQDLRIAGLILEA-----GKALVIVVNKWDLV  296 (429)
T ss_pred             HHHHhCCEEEEEEECCCCccHHHHHHHHHHHHc-----CCcEEEEEECcccC
Confidence               789999999999988998888777766532     25799999999976

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>cd04106 Rab23_lke Rab23-like subfamily

Probab=99.62  E-value=8.7e-15  Score=108.20  Aligned_cols=114  Identities=22%  Similarity=0.202  Sum_probs=73.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEe---CCcEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363           21 TVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLK---DGQVVNVIDTPGLFDFSAGSEF--DEIHAAL   95 (240)
Q Consensus        21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l   95 (240)
                      +|+++|++|+|||||++.+++.........  ............+.   ....+.+|||||...+......  +.+|+++
T Consensus         2 kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v   79 (162)
T cd04106           2 KVIVVGNGNVGKSSMIQRFVKGIFTKDYKK--TIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACI   79 (162)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCC--cEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEE
Confidence            799999999999999999998754322111  11122111222221   2346889999998766554433  8999999


Q ss_pred             EEEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363           96 VVFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        96 ~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~  139 (240)
                      +|++++++.+.... .++..+.....   ..|+++|+||.|....
T Consensus        80 ~v~d~~~~~s~~~l~~~~~~~~~~~~---~~p~iiv~nK~Dl~~~  121 (162)
T cd04106          80 LVFSTTDRESFEAIESWKEKVEAECG---DIPMVLVQTKIDLLDQ  121 (162)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhCC---CCCEEEEEEChhcccc
Confidence            99999865554443 33333333222   3679999999996543

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=99.62  E-value=1.4e-14  Score=107.64  Aligned_cols=114  Identities=19%  Similarity=0.188  Sum_probs=74.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAAL   95 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~l   95 (240)
                      .+|+++|++|+|||||++++++.........  +.+.......... ++  ..+.+|||||...+......  +.+|+++
T Consensus         3 ~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~--t~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii   79 (166)
T cd01869           3 FKLLLIGDSGVGKSCLLLRFADDTYTESYIS--TIGVDFKIRTIEL-DGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   79 (166)
T ss_pred             EEEEEECCCCCCHHHHHHHHhcCCCCCCCCC--ccceeEEEEEEEE-CCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEE
Confidence            6899999999999999999998764332222  2222222223333 33  36789999998766544333  8899999


Q ss_pred             EEEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           96 VVFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        96 ~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      +|+|+++..+.... .++..+....  ....|+++|.||+|...
T Consensus        80 ~v~d~~~~~s~~~l~~~~~~~~~~~--~~~~~~iiv~nK~Dl~~  121 (166)
T cd01869          80 IVYDVTDQESFNNVKQWLQEIDRYA--SENVNKLLVGNKCDLTD  121 (166)
T ss_pred             EEEECcCHHHHHhHHHHHHHHHHhC--CCCCcEEEEEEChhccc
Confidence            99999865554443 3333343322  12357999999999544

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=99.62  E-value=1.3e-14  Score=109.68  Aligned_cols=114  Identities=15%  Similarity=0.118  Sum_probs=72.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEe--CCcEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLK--DGQVVNVIDTPGLFDFSAGSEF--DEIHAAL   95 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l   95 (240)
                      .+|+++|++|+|||||++.+++..... ..++.+.+.  ........  .+..+.+|||||...+...+..  ..+|+++
T Consensus         4 ~kv~~vG~~~~GKTsli~~~~~~~~~~-~~~t~~~~~--~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii   80 (183)
T cd04152           4 LHIVMLGLDSAGKTTVLYRLKFNEFVN-TVPTKGFNT--EKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIV   80 (183)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCcCC-cCCccccce--eEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEE
Confidence            789999999999999999998765432 222122121  11122110  3457899999998766443333  7899999


Q ss_pred             EEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363           96 VVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDEL  137 (240)
Q Consensus        96 ~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~  137 (240)
                      +|+|+++..+... ...+..+...... ...|+++|+||+|..
T Consensus        81 ~v~D~~~~~~~~~~~~~~~~i~~~~~~-~~~p~iiv~NK~D~~  122 (183)
T cd04152          81 FVVDSVDVERMEEAKTELHKITRFSEN-QGVPVLVLANKQDLP  122 (183)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhhhhc-CCCcEEEEEECcCcc
Confidence            9999985433333 2233334333222 236799999999954

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>cd04109 Rab28 Rab28 subfamily

Probab=99.62  E-value=1.1e-14  Score=112.86  Aligned_cols=117  Identities=16%  Similarity=0.087  Sum_probs=76.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeC--CcEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKD--GQVVNVIDTPGLFDFSAGSEF--DEIHAAL   95 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~--~~~~~~l   95 (240)
                      .+|+++|++|+|||||++.+++........  ...+.........+.+  ...+.+|||||...+......  ..+|+++
T Consensus         1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~--~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~ii   78 (215)
T cd04109           1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYK--QTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVF   78 (215)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCC--CceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEE
Confidence            379999999999999999999876432222  1112222222233322  347789999997665444333  8899999


Q ss_pred             EEEECCCCCCHHHH-HHHHHHHHHhCC-CcCCeEEEEEeCCCCCC
Q 036363           96 VVFSVRSRFSQEEE-ATLHSLQTLFGK-NCFDYMIVVFSGRDELE  138 (240)
Q Consensus        96 ~v~~~~~~~~~~~~-~~l~~l~~~~~~-~~~~~~i~v~~~~D~~~  138 (240)
                      +|+|+++..+.... .++..+...... ...+|+++|.||+|...
T Consensus        79 lV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~  123 (215)
T cd04109          79 LVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEH  123 (215)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECccccc
Confidence            99999976666553 344555554432 23357899999999643

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=99.62  E-value=5.2e-15  Score=109.56  Aligned_cols=115  Identities=26%  Similarity=0.217  Sum_probs=75.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEE
Q 036363           19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAA   94 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~   94 (240)
                      ..+|+++|++|+|||||++++++...........+   ........+ ++  ..+.+|||||...+......  ...|++
T Consensus         2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~---~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   77 (164)
T cd04145           2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE---DSYTKQCEI-DGQWAILDILDTAGQEEFSAMREQYMRTGEGF   77 (164)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcc---ceEEEEEEE-CCEEEEEEEEECCCCcchhHHHHHHHhhCCEE
Confidence            37999999999999999999998654322211111   111122233 44  35789999998877654443  889999


Q ss_pred             EEEEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           95 LVVFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        95 l~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      ++|+++++..+.... .++..+..... ....|+++++||+|...
T Consensus        78 ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piiiv~NK~Dl~~  121 (164)
T cd04145          78 LLVFSVTDRGSFEEVDKFHTQILRVKD-RDEFPMILVGNKADLEH  121 (164)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCCEEEEeeCccccc
Confidence            999999865554442 33344443322 22367999999999543

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>cd04110 Rab35 Rab35 subfamily

Probab=99.62  E-value=7.4e-15  Score=112.46  Aligned_cols=114  Identities=18%  Similarity=0.198  Sum_probs=75.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEE
Q 036363           19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAA   94 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~   94 (240)
                      ..+|+++|++|+|||||++.+++.........+.+  .......+.+ .+  ..+.+|||||...+......  ..++++
T Consensus         6 ~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~--~~~~~~~~~~-~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~i   82 (199)
T cd04110           6 LFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIG--VDFKIRTVEI-NGERVKLQIWDTAGQERFRTITSTYYRGTHGV   82 (199)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCCCCcCcccc--ceeEEEEEEE-CCEEEEEEEEeCCCchhHHHHHHHHhCCCcEE
Confidence            48999999999999999999998764322222121  1222222333 33  36789999998776544443  788999


Q ss_pred             EEEEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           95 LVVFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        95 l~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      ++|+|++++.+.... .++..+....   ...|+++|+||+|...
T Consensus        83 ilv~D~~~~~s~~~~~~~~~~i~~~~---~~~piivVgNK~Dl~~  124 (199)
T cd04110          83 IVVYDVTNGESFVNVKRWLQEIEQNC---DDVCKVLVGNKNDDPE  124 (199)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECccccc
Confidence            999999866555542 3444443322   2367899999999553

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.62  E-value=5.4e-15  Score=122.11  Aligned_cols=115  Identities=25%  Similarity=0.304  Sum_probs=93.5

Q ss_pred             CCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC------
Q 036363           15 PSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF------   88 (240)
Q Consensus        15 ~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~------   88 (240)
                      ..|  .+++++|++++|||||+|+|++........ ..|+|...-...... ++.++.++||.|+-......+.      
T Consensus       215 r~G--~kvvIiG~PNvGKSSLLNaL~~~d~AIVTd-I~GTTRDviee~i~i-~G~pv~l~DTAGiRet~d~VE~iGIeRs  290 (454)
T COG0486         215 REG--LKVVIIGRPNVGKSSLLNALLGRDRAIVTD-IAGTTRDVIEEDINL-NGIPVRLVDTAGIRETDDVVERIGIERA  290 (454)
T ss_pred             hcC--ceEEEECCCCCcHHHHHHHHhcCCceEecC-CCCCccceEEEEEEE-CCEEEEEEecCCcccCccHHHHHHHHHH
Confidence            345  899999999999999999999998755443 368888888888888 9999999999999976655444      


Q ss_pred             ----CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363           89 ----DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        89 ----~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~  139 (240)
                          ..+|.++||+|++..++..+...+..+      ....|+++|.||.|...+
T Consensus       291 ~~~i~~ADlvL~v~D~~~~~~~~d~~~~~~~------~~~~~~i~v~NK~DL~~~  339 (454)
T COG0486         291 KKAIEEADLVLFVLDASQPLDKEDLALIELL------PKKKPIIVVLNKADLVSK  339 (454)
T ss_pred             HHHHHhCCEEEEEEeCCCCCchhhHHHHHhc------ccCCCEEEEEechhcccc
Confidence                899999999999977788877776622      223679999999996654

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=99.61  E-value=4.1e-15  Score=111.05  Aligned_cols=114  Identities=22%  Similarity=0.189  Sum_probs=74.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEEEE
Q 036363           21 TVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAALV   96 (240)
Q Consensus        21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~l~   96 (240)
                      +|+++|.+|+|||||++++++........+..+.  ......... .+  ..+.+|||||...+......  +.+|++++
T Consensus         2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~--~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~il   78 (170)
T cd04108           2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGV--DFEMERFEI-LGVPFSLQLWDTAGQERFKCIASTYYRGAQAIII   78 (170)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceee--EEEEEEEEE-CCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEE
Confidence            6899999999999999999987653322222221  211122223 33  46889999999877654444  89999999


Q ss_pred             EEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           97 VFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        97 v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      |+|++++.+... ..++..+...... ..+|+++|.||.|...
T Consensus        79 v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~~iilVgnK~Dl~~  120 (170)
T cd04108          79 VFDLTDVASLEHTRQWLEDALKENDP-SSVLLFLVGTKKDLSS  120 (170)
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhcCC-CCCeEEEEEEChhcCc
Confidence            999985544443 3444444333222 1357899999999543

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>cd01860 Rab5_related Rab5-related subfamily

Probab=99.61  E-value=1.7e-14  Score=106.74  Aligned_cols=114  Identities=20%  Similarity=0.161  Sum_probs=74.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEe-CCcEEEEEeCCCCCCCCCCCcC--CCceEEEE
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLK-DGQVVNVIDTPGLFDFSAGSEF--DEIHAALV   96 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~   96 (240)
                      .+|+++|++|+|||||+|++++...........+.+..  .....+. ....+.+|||||...+......  ..+|++++
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   79 (163)
T cd01860           2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFL--TQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIV   79 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEE--EEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEE
Confidence            68999999999999999999988754422222222121  1222231 2346789999997665443333  78999999


Q ss_pred             EEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363           97 VFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDEL  137 (240)
Q Consensus        97 v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~  137 (240)
                      |+|+++..+... ..++..+.....  ...|++++.||.|..
T Consensus        80 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iivv~nK~D~~  119 (163)
T cd01860          80 VYDITSEESFEKAKSWVKELQRNAS--PNIIIALVGNKADLE  119 (163)
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEECcccc
Confidence            999985444443 344455544432  236789999999955

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=99.61  E-value=1.7e-14  Score=106.86  Aligned_cols=113  Identities=21%  Similarity=0.209  Sum_probs=74.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEEEE
Q 036363           21 TVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAALV   96 (240)
Q Consensus        21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~l~   96 (240)
                      +|+++|++|+|||||++++++............   ......... ++  ..+.+|||||...+......  ...|++++
T Consensus         2 ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~---~~~~~~~~~-~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~   77 (164)
T smart00173        2 KLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIE---DSYRKQIEI-DGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLL   77 (164)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCcCCcccCCchh---hhEEEEEEE-CCEEEEEEEEECCCcccchHHHHHHHhhCCEEEE
Confidence            799999999999999999998764322221111   111122223 33  36779999999887655444  88999999


Q ss_pred             EEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           97 VFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        97 v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      |++++++.+.... .+...+...... ...|+++|.||+|...
T Consensus        78 v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~pii~v~nK~Dl~~  119 (164)
T smart00173       78 VYSITDRQSFEEIKKFREQILRVKDR-DDVPIVLVGNKCDLES  119 (164)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccccc
Confidence            9999865554443 333444443322 2367999999999543

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=99.61  E-value=7e-15  Score=109.41  Aligned_cols=115  Identities=19%  Similarity=0.165  Sum_probs=76.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEE
Q 036363           19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAA   94 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~   94 (240)
                      ..+|+++|++|+|||||++++++...........+.  ......+.+ ++  ..+.+|||||...+......  ..+|++
T Consensus         3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~--~~~~~~~~~-~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~   79 (167)
T cd01867           3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGI--DFKIRTIEL-DGKKIKLQIWDTAGQERFRTITTAYYRGAMGI   79 (167)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccc--eEEEEEEEE-CCEEEEEEEEeCCchHHHHHHHHHHhCCCCEE
Confidence            379999999999999999999987643332222222  222223333 33  36789999998776554433  889999


Q ss_pred             EEEEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           95 LVVFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        95 l~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      ++|+|++++.+.... .++..+....  ....|+++|.||+|...
T Consensus        80 i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~p~iiv~nK~Dl~~  122 (167)
T cd01867          80 ILVYDITDEKSFENIRNWMRNIEEHA--SEDVERMLVGNKCDMEE  122 (167)
T ss_pred             EEEEECcCHHHHHhHHHHHHHHHHhC--CCCCcEEEEEECccccc
Confidence            999999866555442 3333443322  12367999999999654

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.61  E-value=2.3e-14  Score=105.34  Aligned_cols=106  Identities=25%  Similarity=0.247  Sum_probs=73.2

Q ss_pred             EEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC----------CCceE
Q 036363           24 LVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF----------DEIHA   93 (240)
Q Consensus        24 lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~----------~~~~~   93 (240)
                      |+|.+|+|||||+|++++.....+.  ..+.|.......+.+ ++..+.+|||||+.++......          ..+|+
T Consensus         1 l~G~~~~GKssl~~~~~~~~~~~~~--~~~~t~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~   77 (158)
T cd01879           1 LVGNPNVGKTTLFNALTGARQKVGN--WPGVTVEKKEGRFKL-GGKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDL   77 (158)
T ss_pred             CCCCCCCCHHHHHHHHhcCcccccC--CCCcccccceEEEee-CCeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcE
Confidence            5899999999999999997633222  245555555556666 6678999999999876643211          48999


Q ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363           94 ALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        94 ~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~  139 (240)
                      +++|+|+... . .....+..+..     ...|+++|+||+|....
T Consensus        78 vi~v~d~~~~-~-~~~~~~~~~~~-----~~~~~iiv~NK~Dl~~~  116 (158)
T cd01879          78 IVNVVDATNL-E-RNLYLTLQLLE-----LGLPVVVALNMIDEAEK  116 (158)
T ss_pred             EEEEeeCCcc-h-hHHHHHHHHHH-----cCCCEEEEEehhhhccc
Confidence            9999999842 2 22233333332     13679999999996543

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.61  E-value=1.5e-13  Score=112.52  Aligned_cols=118  Identities=18%  Similarity=0.144  Sum_probs=79.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC---------CC
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF---------DE   90 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~---------~~   90 (240)
                      ..|+|||.++||||||+|+|++..+..+.  ...+|.......+.+.+...+.+|||||+.........         ..
T Consensus       159 adVglVG~PNaGKSTLln~ls~a~~~va~--ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~  236 (335)
T PRK12299        159 ADVGLVGLPNAGKSTLISAVSAAKPKIAD--YPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIER  236 (335)
T ss_pred             CCEEEEcCCCCCHHHHHHHHHcCCCccCC--CCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhhh
Confidence            46899999999999999999986532221  13456666655555534567999999999764433211         67


Q ss_pred             ceEEEEEEECCCCCCHHHHHHH-HHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363           91 IHAALVVFSVRSRFSQEEEATL-HSLQTLFGKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        91 ~~~~l~v~~~~~~~~~~~~~~l-~~l~~~~~~~~~~~~i~v~~~~D~~~~  139 (240)
                      ++++++|+|+++..+.++...| ..+......-...|+++|+||+|....
T Consensus       237 a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~  286 (335)
T PRK12299        237 TRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDE  286 (335)
T ss_pred             cCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCc
Confidence            8999999999854455554433 334332111123689999999996543

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.61  E-value=6.4e-15  Score=110.31  Aligned_cols=113  Identities=20%  Similarity=0.137  Sum_probs=71.9

Q ss_pred             EEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeC-CcEEEEEeCCCCCCCCCCCc---------CCCceE
Q 036363           24 LVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKD-GQVVNVIDTPGLFDFSAGSE---------FDEIHA   93 (240)
Q Consensus        24 lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~~---------~~~~~~   93 (240)
                      ++|++|+|||||+|+|++.....+ . ..+.|..+......+ . +..+.+|||||+........         ...+|+
T Consensus         1 iiG~~~~GKStll~~l~~~~~~~~-~-~~~~t~~~~~~~~~~-~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~   77 (176)
T cd01881           1 LVGLPNVGKSTLLNALTNAKPKVA-N-YPFTTLEPNLGVVEV-PDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADA   77 (176)
T ss_pred             CCCCCCCcHHHHHHHHhcCCcccc-C-CCceeecCcceEEEc-CCCCeEEEEeccccchhhhcCCCccHHHHHHHhccCE
Confidence            589999999999999999764211 1 133444444444555 5 78899999999864322111         177999


Q ss_pred             EEEEEECCCCC------CHHHHH-HHHHHHHHhCC-----CcCCeEEEEEeCCCCCCC
Q 036363           94 ALVVFSVRSRF------SQEEEA-TLHSLQTLFGK-----NCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        94 ~l~v~~~~~~~------~~~~~~-~l~~l~~~~~~-----~~~~~~i~v~~~~D~~~~  139 (240)
                      +++|+|+.+..      +..+.. ....+......     ....|+++|+||+|....
T Consensus        78 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~  135 (176)
T cd01881          78 ILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDA  135 (176)
T ss_pred             EEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCch
Confidence            99999998552      233322 22333222111     124689999999996544

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>PLN03118 Rab family protein; Provisional

Probab=99.61  E-value=1.4e-14  Score=111.90  Aligned_cols=115  Identities=17%  Similarity=0.202  Sum_probs=76.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAAL   95 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~l   95 (240)
                      .+|+++|++|+|||||++++++... .......  +.........+ ++  ..+.+|||||...+......  ..+|+++
T Consensus        15 ~kv~ivG~~~vGKTsli~~l~~~~~-~~~~~t~--~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~v   90 (211)
T PLN03118         15 FKILLIGDSGVGKSSLLVSFISSSV-EDLAPTI--GVDFKIKQLTV-GGKRLKLTIWDTAGQERFRTLTSSYYRNAQGII   90 (211)
T ss_pred             eEEEEECcCCCCHHHHHHHHHhCCC-CCcCCCc--eeEEEEEEEEE-CCEEEEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence            8999999999999999999998754 2211111  12222223333 33  46789999999877655444  8899999


Q ss_pred             EEEECCCCCCHHHHH-HHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           96 VVFSVRSRFSQEEEA-TLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        96 ~v~~~~~~~~~~~~~-~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      +|+|.+++.+..... .+......+......++++|.||+|...
T Consensus        91 lv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~  134 (211)
T PLN03118         91 LVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRES  134 (211)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence            999998665555542 3333333333223357899999999543

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.61  E-value=4.5e-16  Score=118.12  Aligned_cols=114  Identities=23%  Similarity=0.350  Sum_probs=85.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCcccc----------------CCCCCcceeEEEEEEE--EeCCcEEEEEeCCCC
Q 036363           18 GVRTVVLVGHTGNGKSATGNSILGRRAFKSR----------------ASSSGVTSTCEMHRTV--LKDGQVVNVIDTPGL   79 (240)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~----------------~~~~~~t~~~~~~~~~--~~~~~~~~l~DtpG~   79 (240)
                      +.++|+++|+.++|||||+++|++.......                ....+.|.........  . .+..++++||||+
T Consensus         2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~-~~~~i~~iDtPG~   80 (188)
T PF00009_consen    2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNE-NNRKITLIDTPGH   80 (188)
T ss_dssp             TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTE-SSEEEEEEEESSS
T ss_pred             CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccc-cccceeecccccc
Confidence            3589999999999999999999865421110                0113455555556665  5 7889999999998


Q ss_pred             CCCCCCCcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363           80 FDFSAGSEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDEL  137 (240)
Q Consensus        80 ~~~~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~  137 (240)
                      .++......  ..+|++++|+|+..+........+..+...     ..|+++++||+|.+
T Consensus        81 ~~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~-----~~p~ivvlNK~D~~  135 (188)
T PF00009_consen   81 EDFIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILREL-----GIPIIVVLNKMDLI  135 (188)
T ss_dssp             HHHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHT-----T-SEEEEEETCTSS
T ss_pred             cceeecccceecccccceeeeeccccccccccccccccccc-----ccceEEeeeeccch
Confidence            776443333  889999999999988888888888887542     24599999999977

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>PRK11058 GTPase HflX; Provisional

Probab=99.61  E-value=1e-14  Score=123.00  Aligned_cols=116  Identities=22%  Similarity=0.158  Sum_probs=80.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCC--c--------CC
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGS--E--------FD   89 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~--~--------~~   89 (240)
                      ..|+++|.+|||||||+|+|++.....+.  ..+.|.......+.+.+...+.+|||||+....+..  .        ..
T Consensus       198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~--~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~  275 (426)
T PRK11058        198 PTVSLVGYTNAGKSTLFNRITEARVYAAD--QLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQETR  275 (426)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCceeecc--CCCCCcCCceEEEEeCCCCeEEEEecCcccccCCHHHHHHHHHHHHHhh
Confidence            58999999999999999999997654222  234455555555666333478899999995532211  0        17


Q ss_pred             CceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           90 EIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        90 ~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      .+|++++|+|++++.+......+..+...++.. ..|+++|+||+|...
T Consensus       276 ~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~-~~pvIiV~NKiDL~~  323 (426)
T PRK11058        276 QATLLLHVVDAADVRVQENIEAVNTVLEEIDAH-EIPTLLVMNKIDMLD  323 (426)
T ss_pred             cCCEEEEEEeCCCccHHHHHHHHHHHHHHhccC-CCCEEEEEEcccCCC
Confidence            899999999999766656554444444444322 367999999999654

>cd01868 Rab11_like Rab11-like

Probab=99.61  E-value=6.7e-15  Score=109.22  Aligned_cols=114  Identities=19%  Similarity=0.181  Sum_probs=75.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAAL   95 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~l   95 (240)
                      .+|+++|++|+|||||++++++.........  ..+.......... ++  ..+.+|||||...+......  ..+++++
T Consensus         4 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~--t~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i   80 (165)
T cd01868           4 FKIVLIGDSGVGKSNLLSRFTRNEFNLDSKS--TIGVEFATRSIQI-DGKTIKAQIWDTAGQERYRAITSAYYRGAVGAL   80 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCC--ccceEEEEEEEEE-CCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEE
Confidence            6899999999999999999998764322222  2222222233333 33  35789999998765443333  7889999


Q ss_pred             EEEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           96 VVFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        96 ~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      +|+|+++..+..+. .++..+.....  ...|+++|+||+|...
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~pi~vv~nK~Dl~~  122 (165)
T cd01868          81 LVYDITKKQTFENVERWLKELRDHAD--SNIVIMLVGNKSDLRH  122 (165)
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEECccccc
Confidence            99999865555543 34444444322  1368999999999543

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>cd04131 Rnd Rnd subfamily

Probab=99.60  E-value=1e-14  Score=109.55  Aligned_cols=110  Identities=15%  Similarity=0.096  Sum_probs=77.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAAL   95 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~l   95 (240)
                      .+|+++|++|+|||||++.+++........++.+...   ...... ++  ..+.+|||||...+......  +++|+++
T Consensus         2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~---~~~~~~-~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~i   77 (178)
T cd04131           2 CKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENY---TASFEI-DEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVL   77 (178)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEE---EEEEEE-CCEEEEEEEEECCCchhhhhcchhhcCCCCEEE
Confidence            5899999999999999999998764332222111111   112233 33  35789999998877654444  8999999


Q ss_pred             EEEECCCCCCHHH--HHHHHHHHHHhCCCcCCeEEEEEeCCCC
Q 036363           96 VVFSVRSRFSQEE--EATLHSLQTLFGKNCFDYMIVVFSGRDE  136 (240)
Q Consensus        96 ~v~~~~~~~~~~~--~~~l~~l~~~~~~~~~~~~i~v~~~~D~  136 (240)
                      +|+|++++.+...  ..++..+....+   ..|+++|.||.|.
T Consensus        78 lvfdit~~~Sf~~~~~~w~~~i~~~~~---~~~iilVgnK~DL  117 (178)
T cd04131          78 ICFDISRPETLDSVLKKWRGEIQEFCP---NTKVLLVGCKTDL  117 (178)
T ss_pred             EEEECCChhhHHHHHHHHHHHHHHHCC---CCCEEEEEEChhh
Confidence            9999998887776  245556655432   3679999999994

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04123 Rab21 Rab21 subfamily

Probab=99.60  E-value=2.4e-14  Score=105.59  Aligned_cols=114  Identities=17%  Similarity=0.170  Sum_probs=74.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAAL   95 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~l   95 (240)
                      .+|+++|++|+|||||++++++........  ...+.........+ .+  ..+.+|||||...+......  ..+|+++
T Consensus         1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i   77 (162)
T cd04123           1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHE--STTQASFFQKTVNI-GGKRIDLAIWDTAGQERYHALGPIYYRDADGAI   77 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcC--CccceeEEEEEEEE-CCEEEEEEEEECCchHHHHHhhHHHhccCCEEE
Confidence            379999999999999999999876532221  11112222222222 23  35789999997665544433  7899999


Q ss_pred             EEEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           96 VVFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        96 ~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      +|+|.+++.+.... .++..+......  ..|+++|+||+|...
T Consensus        78 ~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piiiv~nK~D~~~  119 (162)
T cd04123          78 LVYDITDADSFQKVKKWIKELKQMRGN--NISLVIVGNKIDLER  119 (162)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECccccc
Confidence            99999865554443 333444444332  468999999999653

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.60  E-value=1.1e-14  Score=124.41  Aligned_cols=111  Identities=25%  Similarity=0.267  Sum_probs=85.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCc----------CC
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSE----------FD   89 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~----------~~   89 (240)
                      .+|+++|.+|+|||||+|.|++........ ..+.|....+....+ .+..+.+|||||+.+......          ..
T Consensus         2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~-~~~~t~d~~~~~~~~-~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~   79 (435)
T PRK00093          2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVAD-TPGVTRDRIYGEAEW-LGREFILIDTGGIEPDDDGFEKQIREQAELAIE   79 (435)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeCC-CCCCcccceEEEEEE-CCcEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence            589999999999999999999876432222 355666666667777 788999999999987322100          07


Q ss_pred             CceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363           90 EIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDEL  137 (240)
Q Consensus        90 ~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~  137 (240)
                      .+|++++|+|+.++.+..+.....++...     ..|+++|+||+|..
T Consensus        80 ~ad~il~vvd~~~~~~~~~~~~~~~l~~~-----~~piilv~NK~D~~  122 (435)
T PRK00093         80 EADVILFVVDGRAGLTPADEEIAKILRKS-----NKPVILVVNKVDGP  122 (435)
T ss_pred             hCCEEEEEEECCCCCCHHHHHHHHHHHHc-----CCcEEEEEECccCc
Confidence            89999999999988888877777766543     36799999999954

>smart00175 RAB Rab subfamily of small GTPases

Probab=99.60  E-value=1.8e-14  Score=106.68  Aligned_cols=114  Identities=20%  Similarity=0.209  Sum_probs=74.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAAL   95 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~l   95 (240)
                      .+|+++|++|+|||||++++++.........  ..+.........+ ++  ..+.+|||||...+......  ..+|+++
T Consensus         1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   77 (164)
T smart00175        1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKS--TIGVDFKTKTIEV-DGKRVKLQIWDTAGQERFRSITSSYYRGAVGAL   77 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCC--ceeeEEEEEEEEE-CCEEEEEEEEECCChHHHHHHHHHHhCCCCEEE
Confidence            3799999999999999999998764322222  1122222223333 33  36789999997665543333  8899999


Q ss_pred             EEEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           96 VVFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        96 ~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      +|+++++..+.+.. .++..+.....  ...|+++|+||+|...
T Consensus        78 lv~d~~~~~s~~~~~~~l~~~~~~~~--~~~pivvv~nK~D~~~  119 (164)
T smart00175       78 LVYDITNRESFENLKNWLKELREYAD--PNVVIMLVGNKSDLED  119 (164)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEEchhccc
Confidence            99999865555543 33334433321  2478999999999544

Rab GTPases are implicated in vesicle trafficking.

>cd04176 Rap2 Rap2 subgroup

Probab=99.60  E-value=1.2e-14  Score=107.59  Aligned_cols=114  Identities=18%  Similarity=0.214  Sum_probs=76.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAAL   95 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~l   95 (240)
                      .+|+++|.+|+|||||++.+++........+..   .......... ++  ..+.+|||||...+......  ..+|+++
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~---~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i   77 (163)
T cd04176           2 YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTI---EDFYRKEIEV-DSSPSVLEILDTAGTEQFASMRDLYIKNGQGFI   77 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCch---hheEEEEEEE-CCEEEEEEEEECCCcccccchHHHHHhhCCEEE
Confidence            689999999999999999998775533322111   1112222333 33  35678999998887665554  8899999


Q ss_pred             EEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           96 VVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        96 ~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      +|++.+++-+..+ ..++..+..... ....|+++|+||+|...
T Consensus        78 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piviv~nK~Dl~~  120 (163)
T cd04176          78 VVYSLVNQQTFQDIKPMRDQIVRVKG-YEKVPIILVGNKVDLES  120 (163)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccchh
Confidence            9999986655554 344444544322 12467999999999543

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>cd04158 ARD1 ARD1 subfamily

Probab=99.60  E-value=3.9e-14  Score=105.66  Aligned_cols=110  Identities=15%  Similarity=0.075  Sum_probs=73.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEEEEEE
Q 036363           21 TVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAALVVF   98 (240)
Q Consensus        21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~v~   98 (240)
                      +|+++|..|+|||||++++++... ..    ...|.......... .+..+.+|||||...+......  ..+|++++|+
T Consensus         1 ~vvlvG~~~~GKTsl~~~l~~~~~-~~----~~~T~~~~~~~~~~-~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~   74 (169)
T cd04158           1 RVVTLGLDGAGKTTILFKLKQDEF-MQ----PIPTIGFNVETVEY-KNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVV   74 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCC-CC----cCCcCceeEEEEEE-CCEEEEEEECCCChhcchHHHHHhccCCEEEEEE
Confidence            589999999999999999998743 21    12233333334444 6778999999999876554433  8899999999


Q ss_pred             ECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363           99 SVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDEL  137 (240)
Q Consensus        99 ~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~  137 (240)
                      |.+++.+..+ ...+..+..... ....|+++|+||.|..
T Consensus        75 D~s~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~  113 (169)
T cd04158          75 DSSHRDRVSEAHSELAKLLTEKE-LRDALLLIFANKQDVA  113 (169)
T ss_pred             eCCcHHHHHHHHHHHHHHhcChh-hCCCCEEEEEeCcCcc
Confidence            9986544433 233333332111 1226799999999954

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>cd04157 Arl6 Arl6 subfamily

Probab=99.60  E-value=5.6e-15  Score=109.19  Aligned_cols=113  Identities=15%  Similarity=0.136  Sum_probs=74.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCcccc-CCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEEEEE
Q 036363           21 TVVLVGHTGNGKSATGNSILGRRAFKSR-ASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAALVV   97 (240)
Q Consensus        21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~v   97 (240)
                      +|+++|++|+|||||++.+++...+... ....+    ........ .+..+.+|||||...+...+..  ..+|++++|
T Consensus         1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g----~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v   75 (162)
T cd04157           1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVG----FNVESFEK-GNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFV   75 (162)
T ss_pred             CEEEECCCCCCHHHHHHHHcccCCCcceecCccc----cceEEEEE-CCEEEEEEECCCCHhhHHHHHHHHccCCEEEEE
Confidence            4899999999999999999986532221 11122    12222334 6778899999998876554433  889999999


Q ss_pred             EECCCCCCHHH-HHHHHHHHHHhC-CCcCCeEEEEEeCCCCCC
Q 036363           98 FSVRSRFSQEE-EATLHSLQTLFG-KNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        98 ~~~~~~~~~~~-~~~l~~l~~~~~-~~~~~~~i~v~~~~D~~~  138 (240)
                      +|++++.+... ...+..+..... .....|+++|+||+|...
T Consensus        76 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~  118 (162)
T cd04157          76 IDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPD  118 (162)
T ss_pred             EeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccC
Confidence            99986554432 233444433211 112467999999999644

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>cd04175 Rap1 Rap1 subgroup

Probab=99.60  E-value=8.6e-15  Score=108.53  Aligned_cols=114  Identities=18%  Similarity=0.200  Sum_probs=74.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAAL   95 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~l   95 (240)
                      .+|+++|.+|+|||||+++++............+.+.   ...... ++  ..+.+|||||...+......  .+.|+++
T Consensus         2 ~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~---~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i   77 (164)
T cd04175           2 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY---RKQVEV-DGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFV   77 (164)
T ss_pred             cEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE---EEEEEE-CCEEEEEEEEECCCcccchhHHHHHHhhCCEEE
Confidence            6899999999999999999986543222111111111   122233 33  35679999999877665554  8899999


Q ss_pred             EEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           96 VVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        96 ~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      +|++.++..+..+ ..++..+..... ....|+++|+||+|...
T Consensus        78 lv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~  120 (164)
T cd04175          78 LVYSITAQSTFNDLQDLREQILRVKD-TEDVPMILVGNKCDLED  120 (164)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECCcchh
Confidence            9999986555554 344455544322 22367999999999543

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>cd01862 Rab7 Rab7 subfamily

Probab=99.60  E-value=1.2e-14  Score=108.52  Aligned_cols=116  Identities=16%  Similarity=0.149  Sum_probs=74.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAAL   95 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~l   95 (240)
                      .+|+++|++|+|||||++++++...........+  .........+ .+  ..+.+|||||...+......  ..+|+++
T Consensus         1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~--~~~~~~~~~~-~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   77 (172)
T cd01862           1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIG--ADFLTKEVTV-DDKLVTLQIWDTAGQERFQSLGVAFYRGADCCV   77 (172)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccc--eEEEEEEEEE-CCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEE
Confidence            3799999999999999999998764322222111  1222222333 33  34679999998766554433  7899999


Q ss_pred             EEEECCCCCCHHHH-HHHHHHHHHhCC--CcCCeEEEEEeCCCCCC
Q 036363           96 VVFSVRSRFSQEEE-ATLHSLQTLFGK--NCFDYMIVVFSGRDELE  138 (240)
Q Consensus        96 ~v~~~~~~~~~~~~-~~l~~l~~~~~~--~~~~~~i~v~~~~D~~~  138 (240)
                      +++|+.++.+.... .+...+...+..  ....|+++|+||+|...
T Consensus        78 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~  123 (172)
T cd01862          78 LVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEE  123 (172)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECccccc
Confidence            99999865554443 222333333321  12367999999999663

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=99.60  E-value=9.4e-15  Score=110.10  Aligned_cols=112  Identities=16%  Similarity=0.091  Sum_probs=78.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceE
Q 036363           18 GVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHA   93 (240)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~   93 (240)
                      ...+|+++|.+|+|||||++++++........++.+....   ..... ++  ..+.+|||+|...+......  +++|+
T Consensus         4 ~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~---~~~~~-~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~   79 (182)
T cd04172           4 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT---ASFEI-DTQRIELSLWDTSGSPYYDNVRPLSYPDSDA   79 (182)
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeE---EEEEE-CCEEEEEEEEECCCchhhHhhhhhhcCCCCE
Confidence            3479999999999999999999987643322222221111   12223 33  36789999999877655444  88999


Q ss_pred             EEEEEECCCCCCHHHH--HHHHHHHHHhCCCcCCeEEEEEeCCCC
Q 036363           94 ALVVFSVRSRFSQEEE--ATLHSLQTLFGKNCFDYMIVVFSGRDE  136 (240)
Q Consensus        94 ~l~v~~~~~~~~~~~~--~~l~~l~~~~~~~~~~~~i~v~~~~D~  136 (240)
                      +++|+|++++.+....  .++..+....+   ..|+++|.||.|.
T Consensus        80 ~ilvyDit~~~Sf~~~~~~w~~~i~~~~~---~~piilVgNK~DL  121 (182)
T cd04172          80 VLICFDISRPETLDSVLKKWKGEIQEFCP---NTKMLLVGCKSDL  121 (182)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHHCC---CCCEEEEeEChhh
Confidence            9999999988777763  45556655432   3679999999994

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>cd04127 Rab27A Rab27a subfamily

Probab=99.60  E-value=8.3e-15  Score=110.29  Aligned_cols=116  Identities=16%  Similarity=0.117  Sum_probs=74.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEe-----------CCcEEEEEeCCCCCCCCCCCcC
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLK-----------DGQVVNVIDTPGLFDFSAGSEF   88 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-----------~~~~~~l~DtpG~~~~~~~~~~   88 (240)
                      .+|+++|++|+|||||++++++...........+...  ......+.           ....+.+|||||...+......
T Consensus         5 ~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~   82 (180)
T cd04127           5 IKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDF--REKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA   82 (180)
T ss_pred             EEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEE--EEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence            7999999999999999999998754322222222111  11112210           1246789999998765443333


Q ss_pred             --CCceEEEEEEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           89 --DEIHAALVVFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        89 --~~~~~~l~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                        ..+|++++|+|+++..+..+. .++..+.... ....+|+++|.||+|...
T Consensus        83 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~piiiv~nK~Dl~~  134 (180)
T cd04127          83 FFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHA-YCENPDIVLCGNKADLED  134 (180)
T ss_pred             HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCcEEEEEeCccchh
Confidence              889999999999865555543 3333443321 122467999999999654

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>cd04154 Arl2 Arl2 subfamily

Probab=99.60  E-value=7.9e-15  Score=109.80  Aligned_cols=113  Identities=14%  Similarity=0.177  Sum_probs=74.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEEEE
Q 036363           19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAALV   96 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~   96 (240)
                      ..+|+++|++|+|||||++++++... ....    .|.........+ ++..+.+|||||...+......  ..+|++++
T Consensus        14 ~~kv~ivG~~~~GKTsL~~~l~~~~~-~~~~----~t~g~~~~~~~~-~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~   87 (173)
T cd04154          14 EMRILILGLDNAGKTTILKKLLGEDI-DTIS----PTLGFQIKTLEY-EGYKLNIWDVGGQKTLRPYWRNYFESTDALIW   87 (173)
T ss_pred             ccEEEEECCCCCCHHHHHHHHccCCC-CCcC----CccccceEEEEE-CCEEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence            37999999999999999999998743 2111    122222333444 6678899999998765443332  78999999


Q ss_pred             EEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           97 VFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        97 v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      |+|++++.+..+ ...+..+.... .....|+++|+||+|...
T Consensus        88 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~p~iiv~nK~Dl~~  129 (173)
T cd04154          88 VVDSSDRLRLDDCKRELKELLQEE-RLAGATLLILANKQDLPG  129 (173)
T ss_pred             EEECCCHHHHHHHHHHHHHHHhCh-hhcCCCEEEEEECccccc
Confidence            999986544443 23333332211 112368999999999644

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>cd00154 Rab Rab family

Probab=99.60  E-value=1.1e-14  Score=106.74  Aligned_cols=114  Identities=21%  Similarity=0.205  Sum_probs=72.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEe-CCcEEEEEeCCCCCCCCCCCcC--CCceEEEE
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLK-DGQVVNVIDTPGLFDFSAGSEF--DEIHAALV   96 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~   96 (240)
                      .+|+++|++|+|||||++.+++...........+.+...  ...... ....+.+||+||...+......  ..+|++++
T Consensus         1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~--~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~   78 (159)
T cd00154           1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKS--KTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAIL   78 (159)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEE--EEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEE
Confidence            379999999999999999999877644322222222211  122220 2356789999998665443333  78999999


Q ss_pred             EEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363           97 VFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDEL  137 (240)
Q Consensus        97 v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~  137 (240)
                      |++++++-+... ..++..+.....  ...|+++++||+|..
T Consensus        79 v~d~~~~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~  118 (159)
T cd00154          79 VYDITNRESFENLDKWLKELKEYAP--ENIPIILVGNKIDLE  118 (159)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEEccccc
Confidence            999985333333 233333433221  236799999999965

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.60  E-value=1.5e-15  Score=106.60  Aligned_cols=114  Identities=20%  Similarity=0.225  Sum_probs=71.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCcc--ccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEEEE
Q 036363           21 TVVLVGHTGNGKSATGNSILGRRAFK--SRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAALV   96 (240)
Q Consensus        21 ~i~lvG~~g~GKSTlin~l~g~~~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~   96 (240)
                      +|+++|+.|+|||||+++|++.....  ......+.+.......... ....+.+||++|...+......  ..+|++++
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~il   79 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDG-DRQSLQFWDFGGQEEFYSQHQFFLKKADAVIL   79 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETT-EEEEEEEEEESSSHCHHCTSHHHHHHSCEEEE
T ss_pred             CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecC-CceEEEEEecCccceecccccchhhcCcEEEE
Confidence            68999999999999999999877541  1111222233322222211 2235789999999766554443  88999999


Q ss_pred             EEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCC
Q 036363           97 VFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRD  135 (240)
Q Consensus        97 v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D  135 (240)
                      |+|.++..+... ...+.++...-+.....|+++|.||.|
T Consensus        80 v~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D  119 (119)
T PF08477_consen   80 VYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD  119 (119)
T ss_dssp             EEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred             EEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence            999986555554 233344444432223378999999988

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.60  E-value=9.4e-15  Score=124.48  Aligned_cols=110  Identities=25%  Similarity=0.322  Sum_probs=79.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCc----------CC
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSE----------FD   89 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~----------~~   89 (240)
                      .+|+++|.+|+|||||+|+|++........ ..++|.........+ ++..+.+|||||+.++.....          ..
T Consensus       216 ~kV~ivG~~nvGKSSLln~L~~~~~a~v~~-~~gtT~d~~~~~i~~-~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~~  293 (449)
T PRK05291        216 LKVVIAGRPNVGKSSLLNALLGEERAIVTD-IAGTTRDVIEEHINL-DGIPLRLIDTAGIRETDDEVEKIGIERSREAIE  293 (449)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCcccCC-CCCcccccEEEEEEE-CCeEEEEEeCCCCCCCccHHHHHHHHHHHHHHH
Confidence            799999999999999999999976422222 245555555555566 788899999999976433211          17


Q ss_pred             CceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           90 EIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        90 ~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      .+|++++|+|++++.+..+...+..       ....|+++|+||+|...
T Consensus       294 ~aD~il~VvD~s~~~s~~~~~~l~~-------~~~~piiiV~NK~DL~~  335 (449)
T PRK05291        294 EADLVLLVLDASEPLTEEDDEILEE-------LKDKPVIVVLNKADLTG  335 (449)
T ss_pred             hCCEEEEEecCCCCCChhHHHHHHh-------cCCCCcEEEEEhhhccc
Confidence            8999999999997777665544433       11267999999999654

>cd04120 Rab12 Rab12 subfamily

Probab=99.60  E-value=8.5e-15  Score=111.97  Aligned_cols=112  Identities=14%  Similarity=0.189  Sum_probs=76.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEEEE
Q 036363           21 TVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAALV   96 (240)
Q Consensus        21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~l~   96 (240)
                      .|+++|..|+|||||+++++...+......+  .+.......+.+ ++  ..+.+|||+|...+......  +++|++++
T Consensus         2 ~vvvlG~~gVGKTSli~r~~~~~f~~~~~~T--i~~~~~~~~i~~-~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIl   78 (202)
T cd04120           2 QVIIIGSRGVGKTSLMRRFTDDTFCEACKSG--VGVDFKIKTVEL-RGKKIRLQIWDTAGQERFNSITSAYYRSAKGIIL   78 (202)
T ss_pred             EEEEECcCCCCHHHHHHHHHhCCCCCcCCCc--ceeEEEEEEEEE-CCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEE
Confidence            5899999999999999999876543222221  122222223344 44  46789999999887665544  89999999


Q ss_pred             EEECCCCCCHHHHHHH-HHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363           97 VFSVRSRFSQEEEATL-HSLQTLFGKNCFDYMIVVFSGRDEL  137 (240)
Q Consensus        97 v~~~~~~~~~~~~~~l-~~l~~~~~~~~~~~~i~v~~~~D~~  137 (240)
                      |+|++++.+..+...| ..+.....  ...|+++|.||+|..
T Consensus        79 VfDvtd~~Sf~~l~~w~~~i~~~~~--~~~piilVgNK~DL~  118 (202)
T cd04120          79 VYDITKKETFDDLPKWMKMIDKYAS--EDAELLLVGNKLDCE  118 (202)
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEECcccc
Confidence            9999987777765433 33333222  236799999999953

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=99.60  E-value=1.2e-14  Score=108.65  Aligned_cols=113  Identities=18%  Similarity=0.192  Sum_probs=77.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAAL   95 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~l   95 (240)
                      .+|+++|..|+|||||++.+.+...........+...   .....+ ++  ..+.+|||||...+......  ..+|+++
T Consensus         3 ~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~---~~~~~~-~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~i   78 (172)
T cd04141           3 YKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY---KQQARI-DNEPALLDILDTAGQAEFTAMRDQYMRCGEGFI   78 (172)
T ss_pred             eEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE---EEEEEE-CCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEE
Confidence            6899999999999999999987664322222111111   112333 44  35789999999887665544  8899999


Q ss_pred             EEEECCCCCCHHHHHH-HHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363           96 VVFSVRSRFSQEEEAT-LHSLQTLFGKNCFDYMIVVFSGRDEL  137 (240)
Q Consensus        96 ~v~~~~~~~~~~~~~~-l~~l~~~~~~~~~~~~i~v~~~~D~~  137 (240)
                      +|++++++.+...... +..+.... .....|+++|.||+|..
T Consensus        79 lv~d~~~~~Sf~~~~~~~~~i~~~~-~~~~~piilvgNK~Dl~  120 (172)
T cd04141          79 ICYSVTDRHSFQEASEFKKLITRVR-LTEDIPLVLVGNKVDLE  120 (172)
T ss_pred             EEEECCchhHHHHHHHHHHHHHHhc-CCCCCCEEEEEEChhhh
Confidence            9999998888776543 33343322 22236899999999954

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>cd04142 RRP22 RRP22 subfamily

Probab=99.60  E-value=2e-14  Score=109.87  Aligned_cols=116  Identities=18%  Similarity=0.175  Sum_probs=74.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCc----------
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSE----------   87 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~----------   87 (240)
                      .+|+++|.+|+|||||++.+++........+  ..+.........+ ++  ..+.+|||||...+.....          
T Consensus         1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~p--t~~~~~~~~~i~~-~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~   77 (198)
T cd04142           1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIP--TEHRRLYRPAVVL-SGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRG   77 (198)
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCCCcccCC--ccccccceeEEEE-CCEEEEEEEEeCCCcccCCccchhHHHHHHHhh
Confidence            3799999999999999999998764332221  1111111122333 44  3577999999875432111          


Q ss_pred             CCCceEEEEEEECCCCCCHHHH-HHHHHHHHHhC-CCcCCeEEEEEeCCCCCC
Q 036363           88 FDEIHAALVVFSVRSRFSQEEE-ATLHSLQTLFG-KNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        88 ~~~~~~~l~v~~~~~~~~~~~~-~~l~~l~~~~~-~~~~~~~i~v~~~~D~~~  138 (240)
                      ...+|++++|+|++++.+.+.. .+++.+..... .....|+++|.||+|...
T Consensus        78 ~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~  130 (198)
T cd04142          78 LRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQR  130 (198)
T ss_pred             hccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccc
Confidence            1789999999999976666543 34444544431 123468999999999543

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>cd04112 Rab26 Rab26 subfamily

Probab=99.60  E-value=2.6e-14  Score=108.76  Aligned_cols=115  Identities=17%  Similarity=0.205  Sum_probs=74.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAAL   95 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~l   95 (240)
                      .+|+++|+.|+|||||++.+++........ ............... ++  ..+.||||||...+......  ..+|+++
T Consensus         1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~-~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i   78 (191)
T cd04112           1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNF-IATVGIDFRNKVVTV-DGVKVKLQIWDTAGQERFRSVTHAYYRDAHALL   78 (191)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccCc-CCcccceeEEEEEEE-CCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEE
Confidence            379999999999999999998876432211 111111111111222 33  46789999998766544333  7899999


Q ss_pred             EEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           96 VVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        96 ~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      +|+|+++..+..+ ..++..+......  ..|+++|+||.|...
T Consensus        79 ~v~D~~~~~s~~~~~~~~~~i~~~~~~--~~piiiv~NK~Dl~~  120 (191)
T cd04112          79 LLYDITNKASFDNIRAWLTEIKEYAQE--DVVIMLLGNKADMSG  120 (191)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhCCC--CCcEEEEEEcccchh
Confidence            9999986655544 3444455443322  367999999999543

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.60  E-value=3.3e-14  Score=108.55  Aligned_cols=146  Identities=13%  Similarity=0.100  Sum_probs=90.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEe------CCcEEEEEeCCCCCCCCCCCcC--CCce
Q 036363           21 TVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLK------DGQVVNVIDTPGLFDFSAGSEF--DEIH   92 (240)
Q Consensus        21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~------~~~~~~l~DtpG~~~~~~~~~~--~~~~   92 (240)
                      +|+++|.+|+|||||++.+++.........+.+.+.....  ..+.      ....+.+|||+|...+......  +++|
T Consensus         2 KIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~--~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad   79 (202)
T cd04102           2 RVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKH--HTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVN   79 (202)
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEE--EEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCC
Confidence            7999999999999999999987654333322232222222  2221      1236789999999887654433  8999


Q ss_pred             EEEEEEECCCCCCHHHH-HHHHHHHHHhC-----------------CCcCCeEEEEEeCCCCCCCCcccHHHHhcccCCc
Q 036363           93 AALVVFSVRSRFSQEEE-ATLHSLQTLFG-----------------KNCFDYMIVVFSGRDELEANDETLEDYLGRECPK  154 (240)
Q Consensus        93 ~~l~v~~~~~~~~~~~~-~~l~~l~~~~~-----------------~~~~~~~i~v~~~~D~~~~~~~~~~~~~~~~~~~  154 (240)
                      ++++|+|++++.+.+.. .++..+...-+                 .....|+++|.||.|........-+..+..    
T Consensus        80 ~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~----  155 (202)
T cd04102          80 GIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTA----  155 (202)
T ss_pred             EEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhH----
Confidence            99999999988777764 44455543211                 112368999999999654321111111111    


Q ss_pred             hHHHHHHHhCCcEEEEeCC
Q 036363          155 PLKEILHLFDNRCVLFDNK  173 (240)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~  173 (240)
                       ...+-+.++......+..
T Consensus       156 -~~~ia~~~~~~~i~~~c~  173 (202)
T cd04102         156 -RGFVAEQGNAEEINLNCT  173 (202)
T ss_pred             -hhhHHHhcCCceEEEecC
Confidence             234445566666555543

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.60  E-value=1.9e-14  Score=123.76  Aligned_cols=114  Identities=22%  Similarity=0.286  Sum_probs=83.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCc----------
Q 036363           18 GVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSE----------   87 (240)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~----------   87 (240)
                      ...+|+++|.+|+|||||+|+|++....... ...++|.........+ ++..+.+|||||+........          
T Consensus       210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s-~~~gtT~d~~~~~~~~-~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~  287 (472)
T PRK03003        210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVD-DVAGTTVDPVDSLIEL-GGKTWRFVDTAGLRRRVKQASGHEYYASLRT  287 (472)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCccccc-CCCCccCCcceEEEEE-CCEEEEEEECCCccccccccchHHHHHHHHH
Confidence            3489999999999999999999997643222 2345555544444555 777889999999854322110          


Q ss_pred             ---CCCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           88 ---FDEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        88 ---~~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                         ...+|++++|+|++++.+..+...+..+..     ...|+++|+||+|...
T Consensus       288 ~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~-----~~~piIiV~NK~Dl~~  336 (472)
T PRK03003        288 HAAIEAAEVAVVLIDASEPISEQDQRVLSMVIE-----AGRALVLAFNKWDLVD  336 (472)
T ss_pred             HHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHH-----cCCCEEEEEECcccCC
Confidence               068999999999998899888877766643     1367999999999654

>cd04134 Rho3 Rho3 subfamily

Probab=99.59  E-value=1.5e-14  Score=109.89  Aligned_cols=112  Identities=21%  Similarity=0.176  Sum_probs=76.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAAL   95 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~l   95 (240)
                      .+|+++|++|+|||||++++++........++.+...   ...... ++  ..+.+|||||...+......  ..+|+++
T Consensus         1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~---~~~i~~-~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~i   76 (189)
T cd04134           1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENY---VHDIFV-DGLHIELSLWDTAGQEEFDRLRSLSYADTDVIM   76 (189)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeee---EEEEEE-CCEEEEEEEEECCCChhccccccccccCCCEEE
Confidence            3799999999999999999998765332222111111   111222 33  46789999999887655444  8899999


Q ss_pred             EEEECCCCCCHHHH--HHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           96 VVFSVRSRFSQEEE--ATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        96 ~v~~~~~~~~~~~~--~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      +|++++++-+....  .++..+.....   ..|+++|.||+|...
T Consensus        77 lv~dv~~~~sf~~~~~~~~~~i~~~~~---~~piilvgNK~Dl~~  118 (189)
T cd04134          77 LCFSVDSPDSLENVESKWLGEIREHCP---GVKLVLVALKCDLRE  118 (189)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEChhhcc
Confidence            99999976666543  35555554322   367999999999544

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04121 Rab40 Rab40 subfamily

Probab=99.59  E-value=1e-14  Score=110.50  Aligned_cols=113  Identities=16%  Similarity=0.127  Sum_probs=78.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEE
Q 036363           19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAA   94 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~   94 (240)
                      ..+|+++|..|+|||||++++.+........  ...+.......... ++  ..+.+|||||...+......  .++|++
T Consensus         6 ~~KivviG~~~vGKTsll~~~~~~~~~~~~~--~t~~~~~~~~~i~~-~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~i   82 (189)
T cd04121           6 LLKFLLVGDSDVGKGEILASLQDGSTESPYG--YNMGIDYKTTTILL-DGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGI   82 (189)
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCCCCCC--CcceeEEEEEEEEE-CCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEE
Confidence            3799999999999999999999754322111  11122222222333 44  46789999999887765444  899999


Q ss_pred             EEEEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363           95 LVVFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDEL  137 (240)
Q Consensus        95 l~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~  137 (240)
                      ++|+|++++.+.... .++..+.....   ..|+++|.||.|..
T Consensus        83 llVfD~t~~~Sf~~~~~w~~~i~~~~~---~~piilVGNK~DL~  123 (189)
T cd04121          83 ILVYDITNRWSFDGIDRWIKEIDEHAP---GVPKILVGNRLHLA  123 (189)
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhCC---CCCEEEEEECccch
Confidence            999999987777764 45555544332   36899999999953

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>cd01893 Miro1 Miro1 subfamily

Probab=99.59  E-value=1.7e-14  Score=107.22  Aligned_cols=113  Identities=19%  Similarity=0.102  Sum_probs=73.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEEEEEE
Q 036363           21 TVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAALVVF   98 (240)
Q Consensus        21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~v~   98 (240)
                      +|+++|.+|+|||||++++++...... ........... ..... ....+.+|||||...+......  ..+|++++|+
T Consensus         2 kv~ivG~~~vGKTsl~~~l~~~~~~~~-~~~~~~~~~~~-~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~   78 (166)
T cd01893           2 RIVLIGDEGVGKSSLIMSLVSEEFPEN-VPRVLPEITIP-ADVTP-ERVPTTIVDTSSRPQDRANLAAEIRKANVICLVY   78 (166)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCcCCcc-CCCcccceEee-eeecC-CeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEE
Confidence            799999999999999999998764322 11111111110 11111 3457889999998765433222  7899999999


Q ss_pred             ECCCCCCHHHH--HHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363           99 SVRSRFSQEEE--ATLHSLQTLFGKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        99 ~~~~~~~~~~~--~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~  139 (240)
                      +++++.+....  .++..+.... .  ..|+++|+||+|....
T Consensus        79 d~~~~~s~~~~~~~~~~~i~~~~-~--~~pviiv~nK~Dl~~~  118 (166)
T cd01893          79 SVDRPSTLERIRTKWLPLIRRLG-V--KVPIILVGNKSDLRDG  118 (166)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhC-C--CCCEEEEEEchhcccc
Confidence            99866666553  3444454432 2  3689999999996543

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.58  E-value=3.7e-14  Score=123.82  Aligned_cols=113  Identities=19%  Similarity=0.272  Sum_probs=84.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEEEE
Q 036363           19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAALV   96 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~   96 (240)
                      ..+|+++|+.++|||||+++|.+.......  ..+.|.....+...+.++..+.+|||||+.+|......  ..+|++++
T Consensus        87 ~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e--~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~~~r~rga~~aDiaIL  164 (587)
T TIGR00487        87 PPVVTIMGHVDHGKTSLLDSIRKTKVAQGE--AGGITQHIGAYHVENEDGKMITFLDTPGHEAFTSMRARGAKVTDIVVL  164 (587)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhCCccccc--CCceeecceEEEEEECCCcEEEEEECCCCcchhhHHHhhhccCCEEEE
Confidence            379999999999999999999987643322  24556666666666623348999999999988765544  88899999


Q ss_pred             EEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           97 VFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        97 v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      |++++++...+....+..+..     ...|+++++||+|...
T Consensus       165 VVda~dgv~~qT~e~i~~~~~-----~~vPiIVviNKiDl~~  201 (587)
T TIGR00487       165 VVAADDGVMPQTIEAISHAKA-----ANVPIIVAINKIDKPE  201 (587)
T ss_pred             EEECCCCCCHhHHHHHHHHHH-----cCCCEEEEEECccccc
Confidence            999987777776666655432     1256999999999643

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>cd04116 Rab9 Rab9 subfamily

Probab=99.58  E-value=4.8e-14  Score=105.15  Aligned_cols=116  Identities=18%  Similarity=0.110  Sum_probs=75.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEE
Q 036363           19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAA   94 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~   94 (240)
                      ..+|+++|++|+|||||++++++...........+  .........+ ++  ..+.+|||||...+......  ..+|++
T Consensus         5 ~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~   81 (170)
T cd04116           5 LLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIG--VEFLNKDLEV-DGHFVTLQIWDTAGQERFRSLRTPFYRGSDCC   81 (170)
T ss_pred             EEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCcee--eEEEEEEEEE-CCeEEEEEEEeCCChHHHHHhHHHHhcCCCEE
Confidence            38999999999999999999997654332222111  1211222333 33  35679999998776554443  788999


Q ss_pred             EEEEECCCCCCHHHH-HHHHHHHHHhCC--CcCCeEEEEEeCCCCC
Q 036363           95 LVVFSVRSRFSQEEE-ATLHSLQTLFGK--NCFDYMIVVFSGRDEL  137 (240)
Q Consensus        95 l~v~~~~~~~~~~~~-~~l~~l~~~~~~--~~~~~~i~v~~~~D~~  137 (240)
                      ++|++++++-+.... .+...+......  ....|+++|+||.|..
T Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~  127 (170)
T cd04116          82 LLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP  127 (170)
T ss_pred             EEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc
Confidence            999999866555543 333444433321  1235799999999954

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>cd04133 Rop_like Rop subfamily

Probab=99.58  E-value=3.4e-14  Score=106.45  Aligned_cols=111  Identities=18%  Similarity=0.097  Sum_probs=79.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAAL   95 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~l   95 (240)
                      .+|+++|..|+|||||+.+++.........++.+....   ..... ++  ..+.+|||+|...+......  +++|+++
T Consensus         2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~---~~~~~-~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~i   77 (176)
T cd04133           2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS---ANVSV-DGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFV   77 (176)
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeE---EEEEE-CCEEEEEEEEECCCCccccccchhhcCCCcEEE
Confidence            57999999999999999999977643332222222221   12223 33  46789999999988776655  8999999


Q ss_pred             EEEECCCCCCHHHH--HHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363           96 VVFSVRSRFSQEEE--ATLHSLQTLFGKNCFDYMIVVFSGRDEL  137 (240)
Q Consensus        96 ~v~~~~~~~~~~~~--~~l~~l~~~~~~~~~~~~i~v~~~~D~~  137 (240)
                      +|+|.+++.+.+..  .++..+....+   ..|+++|.||+|..
T Consensus        78 lvyd~~~~~Sf~~~~~~w~~~i~~~~~---~~piilvgnK~Dl~  118 (176)
T cd04133          78 LAFSLISRASYENVLKKWVPELRHYAP---NVPIVLVGTKLDLR  118 (176)
T ss_pred             EEEEcCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEeChhhc
Confidence            99999988888764  45666654322   36899999999953

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>cd04125 RabA_like RabA-like subfamily

Probab=99.58  E-value=1.4e-14  Score=110.01  Aligned_cols=114  Identities=20%  Similarity=0.225  Sum_probs=74.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAAL   95 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~l   95 (240)
                      .+|+++|+.|+|||||++.+++.........+.+.  ......... ++  ..+.+|||||...+......  ..+|+++
T Consensus         1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~--~~~~~~~~~-~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~ii   77 (188)
T cd04125           1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGV--DFKIKTVYI-ENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYL   77 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceee--EEEEEEEEE-CCEEEEEEEEECCCcHHHHhhHHHHccCCCEEE
Confidence            37999999999999999999987653222222222  222223333 33  35679999998766544333  8899999


Q ss_pred             EEEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           96 VVFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        96 ~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      +|+|++++.+.... .++..+....+.  ..|+++|+||.|...
T Consensus        78 lv~d~~~~~s~~~i~~~~~~i~~~~~~--~~~~ivv~nK~Dl~~  119 (188)
T cd04125          78 LVYDVTDQESFENLKFWINEINRYARE--NVIKVIVANKSDLVN  119 (188)
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECCCCcc
Confidence            99999866555543 333444433222  267999999999553

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04132 Rho4_like Rho4-like subfamily

Probab=99.58  E-value=1.1e-14  Score=110.44  Aligned_cols=112  Identities=13%  Similarity=0.081  Sum_probs=73.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEE-EEEEe--CCcEEEEEeCCCCCCCCCCCcC--CCceEE
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMH-RTVLK--DGQVVNVIDTPGLFDFSAGSEF--DEIHAA   94 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~--~~~~~~l~DtpG~~~~~~~~~~--~~~~~~   94 (240)
                      .+|+++|++|+|||||++++++.........    |....+. .....  ....+.+|||||...+......  ..+|++
T Consensus         1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~----t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~i   76 (187)
T cd04132           1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVP----TVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVL   76 (187)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCCCCC----eeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEE
Confidence            3799999999999999999998765332221    2211211 12221  1235789999998766544433  789999


Q ss_pred             EEEEECCCCCCHHHHH--HHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           95 LVVFSVRSRFSQEEEA--TLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        95 l~v~~~~~~~~~~~~~--~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      ++|+|.+++.+..+..  ++..+... .  ...|+++|+||.|...
T Consensus        77 i~v~d~~~~~s~~~~~~~~~~~~~~~-~--~~~piilv~nK~Dl~~  119 (187)
T cd04132          77 LICYAVDNPTSLDNVEDKWFPEVNHF-C--PGTPIMLVGLKTDLRK  119 (187)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHh-C--CCCCEEEEEeChhhhh
Confidence            9999999766665532  33334322 2  2367999999999543

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd01874 Cdc42 Cdc42 subfamily

Probab=99.58  E-value=2.2e-14  Score=107.56  Aligned_cols=111  Identities=20%  Similarity=0.133  Sum_probs=76.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEE-EEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEE
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMH-RTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAA   94 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~   94 (240)
                      .+|+++|.+|+|||||++.+.+..+.....+    |....+. .... ++  ..+.+|||||...+......  ..+|++
T Consensus         2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~p----t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~   76 (175)
T cd01874           2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVP----TVFDNYAVTVMI-GGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVF   76 (175)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCC----ceeeeeEEEEEE-CCEEEEEEEEECCCccchhhhhhhhcccCCEE
Confidence            5899999999999999999998664322222    2211111 2233 44  46789999999887665543  789999


Q ss_pred             EEEEECCCCCCHHHHH--HHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           95 LVVFSVRSRFSQEEEA--TLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        95 l~v~~~~~~~~~~~~~--~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      ++|+|.+++.+.....  ++..+....   ...|+++|.||.|...
T Consensus        77 ilv~d~~~~~s~~~~~~~w~~~i~~~~---~~~piilvgnK~Dl~~  119 (175)
T cd01874          77 LVCFSVVSPSSFENVKEKWVPEITHHC---PKTPFLLVGTQIDLRD  119 (175)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEECHhhhh
Confidence            9999999776666542  444444332   2368999999999543

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>cd04117 Rab15 Rab15 subfamily

Probab=99.58  E-value=2e-14  Score=106.32  Aligned_cols=113  Identities=18%  Similarity=0.211  Sum_probs=74.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEEEE
Q 036363           21 TVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAALV   96 (240)
Q Consensus        21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~l~   96 (240)
                      +|+++|++|+|||||++.+++........+..+  .......... ++  ..+.+|||||...+......  ..+|++++
T Consensus         2 ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~--~~~~~~~~~~-~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~   78 (161)
T cd04117           2 RLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIG--VDFKMKTIEV-DGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFL   78 (161)
T ss_pred             EEEEECcCCCCHHHHHHHHhcCCCCCCCCCcee--eEEEEEEEEE-CCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEE
Confidence            799999999999999999998765333222222  1122223333 33  35689999998776554333  88999999


Q ss_pred             EEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           97 VFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        97 v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      |+|++++-+.+.. .++..+....  ....|+++|.||.|...
T Consensus        79 v~d~~~~~sf~~~~~~~~~~~~~~--~~~~~iilvgnK~Dl~~  119 (161)
T cd04117          79 VYDISSERSYQHIMKWVSDVDEYA--PEGVQKILIGNKADEEQ  119 (161)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhC--CCCCeEEEEEECccccc
Confidence            9999976665553 3344443332  12368999999999543

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.58  E-value=2.6e-14  Score=127.74  Aligned_cols=112  Identities=17%  Similarity=0.226  Sum_probs=86.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEEEE
Q 036363           19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAALV   96 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~   96 (240)
                      ..+|+++|+.++|||||+++|.+.....+ . ..+.|.....+.+.+ ++..+++|||||+.+|......  ..+|++++
T Consensus       290 ~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~-e-~~GIT~~iga~~v~~-~~~~ItfiDTPGhe~F~~m~~rga~~aDiaIL  366 (787)
T PRK05306        290 PPVVTIMGHVDHGKTSLLDAIRKTNVAAG-E-AGGITQHIGAYQVET-NGGKITFLDTPGHEAFTAMRARGAQVTDIVVL  366 (787)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhCCcccc-c-cCceeeeccEEEEEE-CCEEEEEEECCCCccchhHHHhhhhhCCEEEE
Confidence            37999999999999999999987654322 2 245666666667777 7788999999999988766554  78899999


Q ss_pred             EEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           97 VFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        97 v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      |++++++...+....+..+..     ...|+++++||+|...
T Consensus       367 VVdAddGv~~qT~e~i~~a~~-----~~vPiIVviNKiDl~~  403 (787)
T PRK05306        367 VVAADDGVMPQTIEAINHAKA-----AGVPIIVAINKIDKPG  403 (787)
T ss_pred             EEECCCCCCHhHHHHHHHHHh-----cCCcEEEEEECccccc
Confidence            999997777777776665532     1256999999999643

>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]

Probab=99.58  E-value=2.8e-14  Score=100.94  Aligned_cols=116  Identities=17%  Similarity=0.134  Sum_probs=83.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEEEEE
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAALVV   97 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~v   97 (240)
                      .+|++||.+|+|||||+.++....+-+......|.......-.+.- +...+.+|||.|...|.+....  +++.++|+|
T Consensus        12 ~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg-~~~KlaiWDTAGqErFRtLTpSyyRgaqGiIlV   90 (209)
T KOG0080|consen   12 FKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDG-KRLKLAIWDTAGQERFRTLTPSYYRGAQGIILV   90 (209)
T ss_pred             EEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcC-ceEEEEEEeccchHhhhccCHhHhccCceeEEE
Confidence            8999999999999999999987665333333344444444333322 3457889999999999887776  999999999


Q ss_pred             EECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCC
Q 036363           98 FSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDE  136 (240)
Q Consensus        98 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~  136 (240)
                      +|++.+-+......|..-.+.+..+...-.++|.||.|.
T Consensus        91 YDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDk  129 (209)
T KOG0080|consen   91 YDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDK  129 (209)
T ss_pred             EEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccc
Confidence            999987777766555444444443333335788999993

>cd04128 Spg1 Spg1p

Probab=99.58  E-value=7.6e-14  Score=105.27  Aligned_cols=112  Identities=15%  Similarity=0.108  Sum_probs=74.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAAL   95 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~l   95 (240)
                      .+|+++|.+|+|||||++++++........++.+...  ....... ++  ..+.+|||+|...+......  ..+|+++
T Consensus         1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~--~~~~i~~-~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~ii   77 (182)
T cd04128           1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNF--MEKTISI-RGTEITFSIWDLGGQREFINMLPLVCNDAVAIL   77 (182)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE--EEEEEEE-CCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEE
Confidence            3799999999999999999988764332222222221  1122333 33  46789999999877654444  8899999


Q ss_pred             EEEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363           96 VVFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDEL  137 (240)
Q Consensus        96 ~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~  137 (240)
                      +|+|++++.+..+. .++..+.... . ...| ++|+||+|..
T Consensus        78 lv~D~t~~~s~~~i~~~~~~~~~~~-~-~~~p-ilVgnK~Dl~  117 (182)
T cd04128          78 FMFDLTRKSTLNSIKEWYRQARGFN-K-TAIP-ILVGTKYDLF  117 (182)
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhC-C-CCCE-EEEEEchhcc
Confidence            99999977666653 4444454432 2 2244 6889999964

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>cd04149 Arf6 Arf6 subfamily

Probab=99.58  E-value=4e-14  Score=105.50  Aligned_cols=110  Identities=13%  Similarity=0.122  Sum_probs=73.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEEEEE
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAALVV   97 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~v   97 (240)
                      .+|+++|++|+|||||++.+...... ...+    |.......... ....+.+|||||...+......  ..+|++++|
T Consensus        10 ~kv~i~G~~~~GKTsli~~l~~~~~~-~~~~----t~g~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v   83 (168)
T cd04149          10 MRILMLGLDAAGKTTILYKLKLGQSV-TTIP----TVGFNVETVTY-KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFV   83 (168)
T ss_pred             cEEEEECcCCCCHHHHHHHHccCCCc-cccC----CcccceEEEEE-CCEEEEEEECCCCHHHHHHHHHHhccCCEEEEE
Confidence            79999999999999999999865432 2111    22222223334 6678999999999766443333  889999999


Q ss_pred             EECCCCCCHHHHHHHHHHHHHhCCC--cCCeEEEEEeCCCCC
Q 036363           98 FSVRSRFSQEEEATLHSLQTLFGKN--CFDYMIVVFSGRDEL  137 (240)
Q Consensus        98 ~~~~~~~~~~~~~~l~~l~~~~~~~--~~~~~i~v~~~~D~~  137 (240)
                      +|+++..+..+.  ...+.+.+...  ...|+++|+||+|..
T Consensus        84 ~D~t~~~s~~~~--~~~~~~~~~~~~~~~~piilv~NK~Dl~  123 (168)
T cd04149          84 VDSADRDRIDEA--RQELHRIINDREMRDALLLVFANKQDLP  123 (168)
T ss_pred             EeCCchhhHHHH--HHHHHHHhcCHhhcCCcEEEEEECcCCc
Confidence            999865544432  22233322211  136799999999954

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>cd00157 Rho Rho (Ras homology) family

Probab=99.58  E-value=2.4e-14  Score=106.77  Aligned_cols=114  Identities=17%  Similarity=0.095  Sum_probs=74.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEe-CCcEEEEEeCCCCCCCCCCCcC--CCceEEEE
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLK-DGQVVNVIDTPGLFDFSAGSEF--DEIHAALV   96 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~   96 (240)
                      .+|+++|++|+|||||++++++...........   ........... ....+.+|||||+..+......  ..+|++++
T Consensus         1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~   77 (171)
T cd00157           1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTV---FDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLI   77 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce---eeeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEE
Confidence            379999999999999999999876532222111   11111122221 2346889999999876544333  78999999


Q ss_pred             EEECCCCCCHHH--HHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363           97 VFSVRSRFSQEE--EATLHSLQTLFGKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        97 v~~~~~~~~~~~--~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~  139 (240)
                      |+|++++.+...  ..++..+.....   ..|+++|+||+|...+
T Consensus        78 v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ivv~nK~Dl~~~  119 (171)
T cd00157          78 CFSVDSPSSFENVKTKWIPEIRHYCP---NVPIILVGTKIDLRDD  119 (171)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhhCC---CCCEEEEEccHHhhhc
Confidence            999986554443  233444443322   4789999999996654

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>cd04148 RGK RGK subfamily

Probab=99.58  E-value=2e-14  Score=111.77  Aligned_cols=116  Identities=21%  Similarity=0.136  Sum_probs=71.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCc-cccCCCCCcceeEEEEEEEEe-CCcEEEEEeCCCCCCCCCCCcCC-CceEEEEE
Q 036363           21 TVVLVGHTGNGKSATGNSILGRRAF-KSRASSSGVTSTCEMHRTVLK-DGQVVNVIDTPGLFDFSAGSEFD-EIHAALVV   97 (240)
Q Consensus        21 ~i~lvG~~g~GKSTlin~l~g~~~~-~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~-~~~~~l~v   97 (240)
                      +|+++|++|+|||||++.+++.... .......+....  ...+.+. ....+.+|||||........... .+|++++|
T Consensus         2 KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~--~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~ad~iilV   79 (221)
T cd04148           2 RVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTY--ERTVSVDGEESTLVVIDHWEQEMWTEDSCMQYQGDAFVVV   79 (221)
T ss_pred             EEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccce--EEEEEECCEEEEEEEEeCCCcchHHHhHHhhcCCCEEEEE
Confidence            7999999999999999999765543 221111111111  1222221 23468899999998221111115 89999999


Q ss_pred             EECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363           98 FSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        98 ~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~  139 (240)
                      ++++++.+... ..++..+.... .....|+++|.||+|....
T Consensus        80 ~d~td~~S~~~~~~~~~~l~~~~-~~~~~piilV~NK~Dl~~~  121 (221)
T cd04148          80 YSVTDRSSFERASELRIQLRRNR-QLEDRPIILVGNKSDLARS  121 (221)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEEChhcccc
Confidence            99997655553 34444444332 1234689999999995443

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>cd04177 RSR1 RSR1 subgroup

Probab=99.58  E-value=4.4e-14  Score=105.19  Aligned_cols=114  Identities=23%  Similarity=0.213  Sum_probs=76.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAAL   95 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~l   95 (240)
                      .+|+++|++|+|||||++++++...........+..   ......+ ++  ..+.+|||||...+......  ..+++++
T Consensus         2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~---~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~v   77 (168)
T cd04177           2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDS---YRKQVEI-DGRQCDLEILDTAGTEQFTAMRELYIKSGQGFL   77 (168)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchhe---EEEEEEE-CCEEEEEEEEeCCCcccchhhhHHHHhhCCEEE
Confidence            689999999999999999999776433222211111   1122233 33  46789999999888766555  8889999


Q ss_pred             EEEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           96 VVFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        96 ~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      +|++.+++-+.+.. .+...+...... ...|+++++||.|...
T Consensus        78 lv~~~~~~~s~~~~~~~~~~i~~~~~~-~~~piiiv~nK~D~~~  120 (168)
T cd04177          78 LVYSVTSEASLNELGELREQVLRIKDS-DNVPMVLVGNKADLED  120 (168)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhhCC-CCCCEEEEEEChhccc
Confidence            99999865555443 333444443332 2367899999999544

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>cd01890 LepA LepA subfamily

Probab=99.57  E-value=5.7e-15  Score=111.07  Aligned_cols=113  Identities=21%  Similarity=0.252  Sum_probs=74.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCcc------ccC-C------CCCcceeEEEEEEEE----eCCcEEEEEeCCCCCCC
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFK------SRA-S------SSGVTSTCEMHRTVL----KDGQVVNVIDTPGLFDF   82 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~------~~~-~------~~~~t~~~~~~~~~~----~~~~~~~l~DtpG~~~~   82 (240)
                      ++|+++|++|+|||||++++++.....      ... .      ..+.+.........+    ..+..+.+|||||+.++
T Consensus         1 rni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~   80 (179)
T cd01890           1 RNFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDF   80 (179)
T ss_pred             CcEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhh
Confidence            479999999999999999998743110      000 0      112233222222222    13456789999999887


Q ss_pred             CCCCcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363           83 SAGSEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDEL  137 (240)
Q Consensus        83 ~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~  137 (240)
                      ......  ..+|++++|+|++++.+..+...+..+..   .  ..|+++|+||+|..
T Consensus        81 ~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~---~--~~~iiiv~NK~Dl~  132 (179)
T cd01890          81 SYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALE---N--NLEIIPVINKIDLP  132 (179)
T ss_pred             HHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHH---c--CCCEEEEEECCCCC
Confidence            554433  88999999999987777666555544432   1  25699999999954

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>cd01892 Miro2 Miro2 subfamily

Probab=99.57  E-value=9.1e-14  Score=103.66  Aligned_cols=113  Identities=14%  Similarity=0.007  Sum_probs=73.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCc-cccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceE
Q 036363           19 VRTVVLVGHTGNGKSATGNSILGRRAF-KSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHA   93 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g~~~~-~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~   93 (240)
                      ..+|+++|.+|+|||||++++++.... ....++.+..  .......+ ++  ..+.+||++|...+......  ..+|+
T Consensus         4 ~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~--~~~~~~~~-~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~   80 (169)
T cd01892           4 VFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPR--YAVNTVEV-YGQEKYLILREVGEDEVAILLNDAELAACDV   80 (169)
T ss_pred             EEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcc--eEEEEEEE-CCeEEEEEEEecCCcccccccchhhhhcCCE
Confidence            489999999999999999999987643 2222212211  22222333 34  35779999998877554443  89999


Q ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363           94 ALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDEL  137 (240)
Q Consensus        94 ~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~  137 (240)
                      +++|+|++++.+....   ..+...+......|+++|+||+|..
T Consensus        81 ~llv~d~~~~~s~~~~---~~~~~~~~~~~~~p~iiv~NK~Dl~  121 (169)
T cd01892          81 ACLVYDSSDPKSFSYC---AEVYKKYFMLGEIPCLFVAAKADLD  121 (169)
T ss_pred             EEEEEeCCCHHHHHHH---HHHHHHhccCCCCeEEEEEEccccc
Confidence            9999999855333322   2222222222247899999999954

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=99.57  E-value=2.2e-13  Score=100.94  Aligned_cols=109  Identities=18%  Similarity=0.277  Sum_probs=70.9

Q ss_pred             EEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC-------------
Q 036363           22 VVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF-------------   88 (240)
Q Consensus        22 i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~-------------   88 (240)
                      |+++|++|+|||||+|.|++...........+.|.....  ..  ....+.++||||+.........             
T Consensus         2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~--~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~   77 (170)
T cd01876           2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINF--FN--VNDKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE   77 (170)
T ss_pred             EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEE--EE--ccCeEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence            799999999999999999953332222222333433322  22  2338889999998765331100             


Q ss_pred             --CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363           89 --DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        89 --~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~  139 (240)
                        ...++++++++.....+......+.++...     ..|+++|+||+|.+.+
T Consensus        78 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~-----~~~vi~v~nK~D~~~~  125 (170)
T cd01876          78 NRENLKGVVLLIDSRHGPTEIDLEMLDWLEEL-----GIPFLVVLTKADKLKK  125 (170)
T ss_pred             hChhhhEEEEEEEcCcCCCHhHHHHHHHHHHc-----CCCEEEEEEchhcCCh
Confidence              456788899998866556655655555432     2578999999997644

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>cd04118 Rab24 Rab24 subfamily

Probab=99.57  E-value=3.4e-14  Score=108.24  Aligned_cols=113  Identities=21%  Similarity=0.254  Sum_probs=73.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccc-cCCCCCcceeEEEEEEEEeCCc--EEEEEeCCCCCCCCCCCcC--CCceEE
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKS-RASSSGVTSTCEMHRTVLKDGQ--VVNVIDTPGLFDFSAGSEF--DEIHAA   94 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~-~~~~~~~t~~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~--~~~~~~   94 (240)
                      .+|+++|++|+|||||++++++...... .....+.+  ........ ++.  .+.+|||||...+......  ..+|++
T Consensus         1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~--~~~~~~~~-~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~i   77 (193)
T cd04118           1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAA--FVAKRMVV-GERVVTLGIWDTAGSERYEAMSRIYYRGAKAA   77 (193)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeE--EEEEEEEE-CCEEEEEEEEECCCchhhhhhhHhhcCCCCEE
Confidence            3799999999999999999998664321 11111111  11122333 443  4569999998776555443  789999


Q ss_pred             EEEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           95 LVVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        95 l~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      ++|+++++..+... ..++..+...   ....|+++|+||+|...
T Consensus        78 ilv~d~~~~~s~~~~~~~~~~i~~~---~~~~piilv~nK~Dl~~  119 (193)
T cd04118          78 IVCYDLTDSSSFERAKFWVKELQNL---EEHCKIYLCGTKSDLIE  119 (193)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHhc---CCCCCEEEEEEcccccc
Confidence            99999986544443 2344444332   12367999999999543

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=99.57  E-value=5.6e-14  Score=119.54  Aligned_cols=116  Identities=19%  Similarity=0.269  Sum_probs=83.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccc--------------c---------------CCCCCcceeEEEEEEEEeCC
Q 036363           18 GVRTVVLVGHTGNGKSATGNSILGRRAFKS--------------R---------------ASSSGVTSTCEMHRTVLKDG   68 (240)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~--------------~---------------~~~~~~t~~~~~~~~~~~~~   68 (240)
                      +..+|+++|+.++|||||+++|++......              +               ....|.|.........+ ++
T Consensus         5 ~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~-~~   83 (425)
T PRK12317          5 PHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFET-DK   83 (425)
T ss_pred             CEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEec-CC
Confidence            448999999999999999999985432110              0               11357777777777777 78


Q ss_pred             cEEEEEeCCCCCCCCCCCcC--CCceEEEEEEECCC--CCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           69 QVVNVIDTPGLFDFSAGSEF--DEIHAALVVFSVRS--RFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        69 ~~~~l~DtpG~~~~~~~~~~--~~~~~~l~v~~~~~--~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      ..+.+|||||+.++......  ..+|++++|+|+++  .........+..+. .++   .+++++++||+|...
T Consensus        84 ~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~-~~~---~~~iivviNK~Dl~~  153 (425)
T PRK12317         84 YYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLAR-TLG---INQLIVAINKMDAVN  153 (425)
T ss_pred             eEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHH-HcC---CCeEEEEEEcccccc
Confidence            89999999998776543222  78999999999986  55555555554443 223   256899999999654

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.57  E-value=8.6e-14  Score=102.48  Aligned_cols=112  Identities=15%  Similarity=0.104  Sum_probs=74.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEEEEEE
Q 036363           21 TVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAALVVF   98 (240)
Q Consensus        21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~v~   98 (240)
                      +|+++|+.|+|||||++++++... .....    |.........+ .+..+.+|||||...+......  ..+|++++|+
T Consensus         1 ki~iiG~~~~GKssli~~~~~~~~-~~~~~----t~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   74 (158)
T cd00878           1 RILILGLDGAGKTTILYKLKLGEV-VTTIP----TIGFNVETVEY-KNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVV   74 (158)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCC-CCCCC----CcCcceEEEEE-CCEEEEEEECCCChhhHHHHHHHhccCCEEEEEE
Confidence            589999999999999999998862 22222    22222333444 6678999999998876444333  7889999999


Q ss_pred             ECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363           99 SVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        99 ~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~  139 (240)
                      |++++.+... ...+..+..... ....|+++++||+|....
T Consensus        75 D~~~~~~~~~~~~~~~~~~~~~~-~~~~piiiv~nK~D~~~~  115 (158)
T cd00878          75 DSSDRERIEEAKEELHKLLNEEE-LKGVPLLIFANKQDLPGA  115 (158)
T ss_pred             ECCCHHHHHHHHHHHHHHHhCcc-cCCCcEEEEeeccCCccc
Confidence            9985433332 233333333211 123679999999996543

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>cd04111 Rab39 Rab39 subfamily

Probab=99.57  E-value=2.6e-14  Score=110.38  Aligned_cols=116  Identities=18%  Similarity=0.125  Sum_probs=75.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAAL   95 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~l   95 (240)
                      .+|+++|++|+|||||++.+++.........  ............+.++  ..+.+|||||...+......  ..+|+++
T Consensus         3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~--ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii   80 (211)
T cd04111           3 FRLIVIGDSTVGKSSLLKRFTEGRFAEVSDP--TVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVL   80 (211)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCc--eeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEE
Confidence            7899999999999999999998764332221  1111221122222122  36789999998776544333  7899999


Q ss_pred             EEEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           96 VVFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        96 ~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      +|+|++++.+..+. .++..+...... ..+++++|.||.|...
T Consensus        81 lv~D~~~~~Sf~~l~~~~~~i~~~~~~-~~~~iilvgNK~Dl~~  123 (211)
T cd04111          81 LVFDITNRESFEHVHDWLEEARSHIQP-HRPVFILVGHKCDLES  123 (211)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCC-CCCeEEEEEEcccccc
Confidence            99999876555543 444444444332 2356889999999544

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>COG3596 Predicted GTPase [General function prediction only]

Probab=99.57  E-value=6.1e-15  Score=113.83  Aligned_cols=118  Identities=23%  Similarity=0.218  Sum_probs=83.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--------
Q 036363           17 NGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--------   88 (240)
Q Consensus        17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--------   88 (240)
                      .++.+|.++|.+|+|||||+|+|++......... ..++....+....+ ++..+++|||||+.+.......        
T Consensus        37 ~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~v-g~~t~~~~~~~~~~-~~~~l~lwDtPG~gdg~~~D~~~r~~~~d~  114 (296)
T COG3596          37 KEPVNVLLMGATGAGKSSLINALFQGEVKEVSKV-GVGTDITTRLRLSY-DGENLVLWDTPGLGDGKDKDAEHRQLYRDY  114 (296)
T ss_pred             cCceeEEEecCCCCcHHHHHHHHHhccCceeeec-ccCCCchhhHHhhc-cccceEEecCCCcccchhhhHHHHHHHHHH
Confidence            3448899999999999999999996543222211 11121122222233 6688999999999997655522        


Q ss_pred             -CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363           89 -DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        89 -~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~  139 (240)
                       +..|.+++++++.++.-..+..+++.+.-....   .++++++|.+|...+
T Consensus       115 l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~~---~~~i~~VtQ~D~a~p  163 (296)
T COG3596         115 LPKLDLVLWLIKADDRALGTDEDFLRDVIILGLD---KRVLFVVTQADRAEP  163 (296)
T ss_pred             hhhccEEEEeccCCCccccCCHHHHHHHHHhccC---ceeEEEEehhhhhcc
Confidence             889999999999877777777777777654433   679999999998765

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=99.57  E-value=2.3e-14  Score=107.26  Aligned_cols=109  Identities=22%  Similarity=0.170  Sum_probs=74.1

Q ss_pred             EEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEE-EEEEEeCCc--EEEEEeCCCCCCCCCCCcC--CCceEEEE
Q 036363           22 VVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM-HRTVLKDGQ--VVNVIDTPGLFDFSAGSEF--DEIHAALV   96 (240)
Q Consensus        22 i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~~~~--~~~l~DtpG~~~~~~~~~~--~~~~~~l~   96 (240)
                      |+++|+.|+|||||++++++.........    +....+ ..... ++.  .+.+|||||...+......  ..+|++++
T Consensus         1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~----~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~il   75 (174)
T smart00174        1 LVVVGDGAVGKTCLLISYTTNAFPEDYVP----TVFENYSADVEV-DGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLI   75 (174)
T ss_pred             CEEECCCCCCHHHHHHHHHhCCCCCCCCC----cEEeeeeEEEEE-CCEEEEEEEEECCCCcccchhchhhcCCCCEEEE
Confidence            58999999999999999998764332221    111111 12223 333  5789999999877655444  88999999


Q ss_pred             EEECCCCCCHHHH--HHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           97 VFSVRSRFSQEEE--ATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        97 v~~~~~~~~~~~~--~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      |+|+++..+....  .++..+....+   ..|+++|.||+|...
T Consensus        76 v~d~~~~~s~~~~~~~~~~~i~~~~~---~~piilv~nK~Dl~~  116 (174)
T smart00174       76 CFSVDSPASFENVKEKWYPEVKHFCP---NTPIILVGTKLDLRE  116 (174)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhhCC---CCCEEEEecChhhhh
Confidence            9999866555543  34555544332   368999999999543

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.57  E-value=1.7e-13  Score=117.80  Aligned_cols=60  Identities=20%  Similarity=0.201  Sum_probs=49.5

Q ss_pred             CCCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEE
Q 036363            2 GGSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRT   63 (240)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~   63 (240)
                      |++.+++++++.+.+|  .+|+|||+||+|||||++.|+|...+.++......+....+..+
T Consensus        14 g~~~l~~~~~l~~~~G--~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q   73 (530)
T COG0488          14 GDRPLLENVSLTLNPG--ERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQ   73 (530)
T ss_pred             CCceeecCCcceeCCC--CEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCC
Confidence            6788999999999999  99999999999999999999999877777654444444444443

>cd01889 SelB_euk SelB subfamily

Probab=99.57  E-value=1.2e-14  Score=110.62  Aligned_cols=114  Identities=17%  Similarity=0.255  Sum_probs=73.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCC---ccc--cCCCCCcceeEEEEEEEEe-------------CCcEEEEEeCCCCCCC
Q 036363           21 TVVLVGHTGNGKSATGNSILGRRA---FKS--RASSSGVTSTCEMHRTVLK-------------DGQVVNVIDTPGLFDF   82 (240)
Q Consensus        21 ~i~lvG~~g~GKSTlin~l~g~~~---~~~--~~~~~~~t~~~~~~~~~~~-------------~~~~~~l~DtpG~~~~   82 (240)
                      +|+++|+.|+|||||++++++...   +..  .....+.|.........+.             .+..+.+|||||+..+
T Consensus         2 ~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~   81 (192)
T cd01889           2 NVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHASL   81 (192)
T ss_pred             eEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHHH
Confidence            799999999999999999997311   000  0111234544444444441             1568899999998643


Q ss_pred             CCCCcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363           83 SAGSEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        83 ~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~  139 (240)
                      ......  ..+|++++|+|+..+.+..+...+... ...    ..|+++++||+|....
T Consensus        82 ~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~-~~~----~~~~iiv~NK~Dl~~~  135 (192)
T cd01889          82 IRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIG-EIL----CKKLIVVLNKIDLIPE  135 (192)
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHH-HHc----CCCEEEEEECcccCCH
Confidence            221111  678999999999866666554444432 222    2478999999996643

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.57  E-value=4.8e-14  Score=117.62  Aligned_cols=116  Identities=18%  Similarity=0.155  Sum_probs=76.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC---------CCc
Q 036363           21 TVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF---------DEI   91 (240)
Q Consensus        21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~---------~~~   91 (240)
                      -|+|||.++||||||+|+|++.....+.  ...+|.......+.+.+...+.++||||+.........         ..+
T Consensus       161 dValVG~PNaGKSTLln~Lt~~k~~vs~--~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~ra  238 (390)
T PRK12298        161 DVGLLGLPNAGKSTFIRAVSAAKPKVAD--YPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLERC  238 (390)
T ss_pred             cEEEEcCCCCCHHHHHHHHhCCcccccC--CCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHhC
Confidence            7999999999999999999987642221  23456566656555523457999999999865433211         778


Q ss_pred             eEEEEEEECC---CCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           92 HAALVVFSVR---SRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        92 ~~~l~v~~~~---~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      +++++|+|++   ..-...+ ..++..+......-...|.++|+||+|...
T Consensus       239 dvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~  289 (390)
T PRK12298        239 RVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLD  289 (390)
T ss_pred             CEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCC
Confidence            9999999987   1222222 344444443211112367899999999654

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.57  E-value=3.7e-14  Score=105.59  Aligned_cols=111  Identities=21%  Similarity=0.172  Sum_probs=73.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEEEEEE
Q 036363           21 TVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAALVVF   98 (240)
Q Consensus        21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~v~   98 (240)
                      +|+++|++|+|||||++.+++.. .....++.+    ........ .+..+.+|||||...+......  ..+|++++|+
T Consensus         1 ~i~~~G~~~~GKTsl~~~l~~~~-~~~~~~t~g----~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~   74 (167)
T cd04161           1 TLLTVGLDNAGKTTLVSALQGEI-PKKVAPTVG----FTPTKLRL-DKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVV   74 (167)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCC-CccccCccc----ceEEEEEE-CCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEE
Confidence            48999999999999999999862 211112222    22233444 6778999999998765544333  8899999999


Q ss_pred             ECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           99 SVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        99 ~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      |+++..+..+ ...+..+..... ....|+++|+||.|...
T Consensus        75 D~s~~~s~~~~~~~l~~l~~~~~-~~~~piliv~NK~Dl~~  114 (167)
T cd04161          75 DSSDDDRVQEVKEILRELLQHPR-VSGKPILVLANKQDKKN  114 (167)
T ss_pred             ECCchhHHHHHHHHHHHHHcCcc-ccCCcEEEEEeCCCCcC
Confidence            9986554443 334444432211 12468999999999543

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>cd01875 RhoG RhoG subfamily

Probab=99.57  E-value=2.5e-14  Score=108.83  Aligned_cols=110  Identities=18%  Similarity=0.123  Sum_probs=76.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAAL   95 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~l   95 (240)
                      .+|+++|..|+|||||++.++...+.....++.+....   ..... ++  ..+.+|||||...+......  +++|+++
T Consensus         4 ~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~---~~~~~-~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~i   79 (191)
T cd01875           4 IKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYS---AQTAV-DGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFI   79 (191)
T ss_pred             EEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeE---EEEEE-CCEEEEEEEEECCCchhhhhhhhhhccCCCEEE
Confidence            79999999999999999999876543332222221111   11223 33  46789999999988765544  8899999


Q ss_pred             EEEECCCCCCHHHHH--HHHHHHHHhCCCcCCeEEEEEeCCCC
Q 036363           96 VVFSVRSRFSQEEEA--TLHSLQTLFGKNCFDYMIVVFSGRDE  136 (240)
Q Consensus        96 ~v~~~~~~~~~~~~~--~l~~l~~~~~~~~~~~~i~v~~~~D~  136 (240)
                      +|+|++++.+.+...  ++..+.... .  ..|+++|.||.|.
T Consensus        80 lvydit~~~Sf~~~~~~w~~~i~~~~-~--~~piilvgNK~DL  119 (191)
T cd01875          80 ICFSIASPSSYENVRHKWHPEVCHHC-P--NVPILLVGTKKDL  119 (191)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhhC-C--CCCEEEEEeChhh
Confidence            999999777766643  334444332 2  3689999999994

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>cd04126 Rab20 Rab20 subfamily

Probab=99.56  E-value=4.7e-14  Score=109.17  Aligned_cols=111  Identities=22%  Similarity=0.142  Sum_probs=78.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEEEEE
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAALVV   97 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~v   97 (240)
                      .+|+++|.+|+|||||++.+++..... ...    |....+....+ ....+.+|||||...+......  ..+|++++|
T Consensus         1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~----Tig~~~~~~~~-~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV   74 (220)
T cd04126           1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVS----TVGGAFYLKQW-GPYNISIWDTAGREQFHGLGSMYCRGAAAVILT   74 (220)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCCC-CCC----ccceEEEEEEe-eEEEEEEEeCCCcccchhhHHHHhccCCEEEEE
Confidence            379999999999999999999876432 111    22222233333 4567899999999877655443  899999999


Q ss_pred             EECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           98 FSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        98 ~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      +|++++.+..+. .++..+.....  ...|+++|.||+|...
T Consensus        75 ~Dvt~~~Sf~~l~~~~~~l~~~~~--~~~piIlVgNK~DL~~  114 (220)
T cd04126          75 YDVSNVQSLEELEDRFLGLTDTAN--EDCLFAVVGNKLDLTE  114 (220)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECccccc
Confidence            999977776664 34555544322  2367999999999643

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=99.56  E-value=2.8e-14  Score=111.11  Aligned_cols=110  Identities=14%  Similarity=0.088  Sum_probs=77.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAAL   95 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~l   95 (240)
                      .+|+++|..|+|||||++.+++..+.....++.+....   ..... ++  ..+.+|||+|...+......  .++|+++
T Consensus        14 ~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~---~~i~~-~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vI   89 (232)
T cd04174          14 CKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT---AGLET-EEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVL   89 (232)
T ss_pred             EEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeE---EEEEE-CCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEE
Confidence            79999999999999999999987643332222221111   12223 33  46789999998877654443  8999999


Q ss_pred             EEEECCCCCCHHH--HHHHHHHHHHhCCCcCCeEEEEEeCCCC
Q 036363           96 VVFSVRSRFSQEE--EATLHSLQTLFGKNCFDYMIVVFSGRDE  136 (240)
Q Consensus        96 ~v~~~~~~~~~~~--~~~l~~l~~~~~~~~~~~~i~v~~~~D~  136 (240)
                      +|+|++++.+...  ..++..+....+   ..|+++|.||+|.
T Consensus        90 lVyDit~~~Sf~~~~~~w~~~i~~~~~---~~piilVgNK~DL  129 (232)
T cd04174          90 LCFDISRPETVDSALKKWKAEIMDYCP---STRILLIGCKTDL  129 (232)
T ss_pred             EEEECCChHHHHHHHHHHHHHHHHhCC---CCCEEEEEECccc
Confidence            9999997777765  345555655432   2579999999994

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=99.56  E-value=2.7e-14  Score=106.01  Aligned_cols=113  Identities=20%  Similarity=0.234  Sum_probs=70.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCc--EEEEEeCCCCCCC-CCCCcC--CCceEEE
Q 036363           21 TVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQ--VVNVIDTPGLFDF-SAGSEF--DEIHAAL   95 (240)
Q Consensus        21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~l~DtpG~~~~-~~~~~~--~~~~~~l   95 (240)
                      +|+++|++|+|||||++++++..........   +.........+ ++.  .+.+|||||.... ......  ..+|+++
T Consensus         1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t---~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i   76 (165)
T cd04146           1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPN---LESLYSRQVTI-DGEQVSLEILDTAGQQQADTEQLERSIRWADGFV   76 (165)
T ss_pred             CEEEECCCCCcHHHHHHHHHhCccccccCCC---hHHhceEEEEE-CCEEEEEEEEECCCCcccccchHHHHHHhCCEEE
Confidence            4899999999999999999875432111111   11111122223 333  5789999998853 222222  7899999


Q ss_pred             EEEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363           96 VVFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDEL  137 (240)
Q Consensus        96 ~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~  137 (240)
                      +|+|++++.+.... .++..+..........|+++|+||+|..
T Consensus        77 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~  119 (165)
T cd04146          77 LVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLL  119 (165)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchH
Confidence            99999976665543 3344444332112236799999999943

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>cd01871 Rac1_like Rac1-like subfamily

Probab=99.56  E-value=4.2e-14  Score=105.97  Aligned_cols=111  Identities=19%  Similarity=0.085  Sum_probs=75.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAAL   95 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~l   95 (240)
                      .+|+++|..|+|||||+.++++........+..+...   ...... ++  ..+.+|||||...+......  .++|+++
T Consensus         2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~---~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i   77 (174)
T cd01871           2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY---SANVMV-DGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFL   77 (174)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeee---EEEEEE-CCEEEEEEEEECCCchhhhhhhhhhcCCCCEEE
Confidence            6899999999999999999997654322222211111   112223 33  46789999999877655444  8899999


Q ss_pred             EEEECCCCCCHHHH--HHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363           96 VVFSVRSRFSQEEE--ATLHSLQTLFGKNCFDYMIVVFSGRDEL  137 (240)
Q Consensus        96 ~v~~~~~~~~~~~~--~~l~~l~~~~~~~~~~~~i~v~~~~D~~  137 (240)
                      +|++.+++-+....  .++..+....   ...|+++|.||.|..
T Consensus        78 lv~d~~~~~sf~~~~~~~~~~~~~~~---~~~piilvgnK~Dl~  118 (174)
T cd01871          78 ICFSLVSPASFENVRAKWYPEVRHHC---PNTPIILVGTKLDLR  118 (174)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEeeChhhc
Confidence            99999976666654  2444454432   236899999999953

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd00879 Sar1 Sar1 subfamily

Probab=99.56  E-value=1.6e-14  Score=109.72  Aligned_cols=122  Identities=11%  Similarity=0.016  Sum_probs=77.5

Q ss_pred             cCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCC
Q 036363            7 DDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGS   86 (240)
Q Consensus         7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~   86 (240)
                      ++++++....   .+|+++|++|||||||++++++.... ...    .|.........+ ++..+.+|||||...+...+
T Consensus        10 ~~~~~~~~~~---~ki~ilG~~~~GKStLi~~l~~~~~~-~~~----~T~~~~~~~i~~-~~~~~~l~D~~G~~~~~~~~   80 (190)
T cd00879          10 LSSLGLYNKE---AKILFLGLDNAGKTTLLHMLKDDRLA-QHV----PTLHPTSEELTI-GNIKFKTFDLGGHEQARRLW   80 (190)
T ss_pred             HHHhhcccCC---CEEEEECCCCCCHHHHHHHHhcCCCc-ccC----CccCcceEEEEE-CCEEEEEEECCCCHHHHHHH
Confidence            3444444333   68999999999999999999986542 111    122222334455 67788999999987654332


Q ss_pred             cC--CCceEEEEEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           87 EF--DEIHAALVVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        87 ~~--~~~~~~l~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      ..  ..+|++++|+|.++..+... ...+..+.... .....|+++++||+|...
T Consensus        81 ~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~-~~~~~pvivv~NK~Dl~~  134 (190)
T cd00879          81 KDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDE-ELANVPFLILGNKIDLPG  134 (190)
T ss_pred             HHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCc-cccCCCEEEEEeCCCCCC
Confidence            22  78899999999985433322 22333332211 122368999999999643

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>PLN03110 Rab GTPase; Provisional

Probab=99.56  E-value=2.4e-14  Score=110.95  Aligned_cols=114  Identities=19%  Similarity=0.202  Sum_probs=77.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEE
Q 036363           19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAA   94 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~   94 (240)
                      ..+|+++|+.|+|||||++++++.........+.+.  ......+.+ ++  ..+.+|||||...+......  ..++++
T Consensus        12 ~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~--~~~~~~v~~-~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~   88 (216)
T PLN03110         12 LFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGV--EFATRTLQV-EGKTVKAQIWDTAGQERYRAITSAYYRGAVGA   88 (216)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeE--EEEEEEEEE-CCEEEEEEEEECCCcHHHHHHHHHHhCCCCEE
Confidence            379999999999999999999987653332222222  222223333 33  36789999998776554433  889999


Q ss_pred             EEEEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363           95 LVVFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDEL  137 (240)
Q Consensus        95 l~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~  137 (240)
                      ++|+|.++..+.... .++..+....+  ...|+++|+||+|..
T Consensus        89 ilv~d~~~~~s~~~~~~~~~~~~~~~~--~~~piiiv~nK~Dl~  130 (216)
T PLN03110         89 LLVYDITKRQTFDNVQRWLRELRDHAD--SNIVIMMAGNKSDLN  130 (216)
T ss_pred             EEEEECCChHHHHHHHHHHHHHHHhCC--CCCeEEEEEEChhcc
Confidence            999999866665553 44455544332  236799999999953

>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.56  E-value=3.8e-14  Score=103.59  Aligned_cols=119  Identities=14%  Similarity=0.133  Sum_probs=89.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEEEEE
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAALVV   97 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~v   97 (240)
                      .+++++|..++||||||++++-..+......+.|.........+.- ....+.+|||.|+..|......  +...++++|
T Consensus        23 ~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d-~~vrLQlWDTAGQERFrslipsY~Rds~vaviV  101 (221)
T KOG0094|consen   23 YKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLED-RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV  101 (221)
T ss_pred             EEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcC-cEEEEEEEecccHHHHhhhhhhhccCCeEEEEE
Confidence            7999999999999999999997665444444444444333222211 2346789999999999887766  999999999


Q ss_pred             EECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCC
Q 036363           98 FSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELEAN  140 (240)
Q Consensus        98 ~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~  140 (240)
                      +|++++.+.+. .++++.+....|.+. ..+++|.||.|+..+.
T Consensus       102 yDit~~~Sfe~t~kWi~dv~~e~gs~~-viI~LVGnKtDL~dkr  144 (221)
T KOG0094|consen  102 YDITDRNSFENTSKWIEDVRRERGSDD-VIIFLVGNKTDLSDKR  144 (221)
T ss_pred             EeccccchHHHHHHHHHHHHhccCCCc-eEEEEEcccccccchh
Confidence            99998888876 688888887665432 5688899999977654

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=99.56  E-value=2e-14  Score=106.55  Aligned_cols=114  Identities=15%  Similarity=0.093  Sum_probs=71.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC--CCccccCCCCCcceeEEEEEEEEe--CCcEEEEEeCCCCCCCCCCCcC--CCceE
Q 036363           20 RTVVLVGHTGNGKSATGNSILGR--RAFKSRASSSGVTSTCEMHRTVLK--DGQVVNVIDTPGLFDFSAGSEF--DEIHA   93 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~--~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~l~DtpG~~~~~~~~~~--~~~~~   93 (240)
                      .+|+++|++|+|||||++++.+.  ..........+..  +........  ....+.+|||||...+......  ..+|+
T Consensus         1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~   78 (164)
T cd04101           1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCD--FVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSV   78 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEE--EEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCE
Confidence            37999999999999999999854  2222211111111  211222221  2357889999997655443333  88999


Q ss_pred             EEEEEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           94 ALVVFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        94 ~l~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      +++|+|.++..+.... .++..+....   ...|+++|+||+|...
T Consensus        79 ii~v~d~~~~~s~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~  121 (164)
T cd04101          79 FILVYDVSNKASFENCSRWVNKVRTAS---KHMPGVLVGNKMDLAD  121 (164)
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECccccc
Confidence            9999999865544432 3334443321   2368999999999544

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>cd04144 Ras2 Ras2 subfamily

Probab=99.56  E-value=2.1e-14  Score=109.12  Aligned_cols=114  Identities=22%  Similarity=0.267  Sum_probs=74.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCc--EEEEEeCCCCCCCCCCCcC--CCceEEEE
Q 036363           21 TVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQ--VVNVIDTPGLFDFSAGSEF--DEIHAALV   96 (240)
Q Consensus        21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~--~~~~~~l~   96 (240)
                      +|+++|.+|+|||||++.+++...........+..   ....... ++.  .+.+|||||...+......  ..+|++++
T Consensus         1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~---~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~il   76 (190)
T cd04144           1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDS---YRKQVVV-DGQPCMLEVLDTAGQEEYTALRDQWIREGEGFIL   76 (190)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhh---EEEEEEE-CCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEE
Confidence            48999999999999999998765422211111111   1112223 443  4789999998776654443  88999999


Q ss_pred             EEECCCCCCHHH-HHHHHHHHHHhCC-CcCCeEEEEEeCCCCCC
Q 036363           97 VFSVRSRFSQEE-EATLHSLQTLFGK-NCFDYMIVVFSGRDELE  138 (240)
Q Consensus        97 v~~~~~~~~~~~-~~~l~~l~~~~~~-~~~~~~i~v~~~~D~~~  138 (240)
                      |+++++..+... ..++..+...... ....|+++|+||+|...
T Consensus        77 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~  120 (190)
T cd04144          77 VYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVY  120 (190)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccc
Confidence            999986666554 3444555444321 13467999999999543

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.56  E-value=8.4e-14  Score=125.14  Aligned_cols=112  Identities=22%  Similarity=0.255  Sum_probs=84.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC----------C
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF----------D   89 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~----------~   89 (240)
                      .+|+++|.+++|||||+|+|+|....... ...+.|.........+ ++..+.+|||||+.........          .
T Consensus       276 ~~V~IvG~~nvGKSSL~n~l~~~~~~iv~-~~pGvT~d~~~~~~~~-~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~  353 (712)
T PRK09518        276 GVVAIVGRPNVGKSTLVNRILGRREAVVE-DTPGVTRDRVSYDAEW-AGTDFKLVDTGGWEADVEGIDSAIASQAQIAVS  353 (712)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCceeec-CCCCeeEEEEEEEEEE-CCEEEEEEeCCCcCCCCccHHHHHHHHHHHHHH
Confidence            78999999999999999999987542222 2356676666666667 7888999999998743221110          7


Q ss_pred             CceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           90 EIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        90 ~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      .+|++++|+|++.+++..+..+...+..     ...|+++|+||+|...
T Consensus       354 ~aD~iL~VvDa~~~~~~~d~~i~~~Lr~-----~~~pvIlV~NK~D~~~  397 (712)
T PRK09518        354 LADAVVFVVDGQVGLTSTDERIVRMLRR-----AGKPVVLAVNKIDDQA  397 (712)
T ss_pred             hCCEEEEEEECCCCCCHHHHHHHHHHHh-----cCCCEEEEEECccccc
Confidence            8999999999997788877777666643     2368999999999643

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.56  E-value=1.4e-13  Score=112.53  Aligned_cols=118  Identities=19%  Similarity=0.158  Sum_probs=76.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC---------CC
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF---------DE   90 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~---------~~   90 (240)
                      ..|+|||.++||||||+|+|++.....+..  ..+|.........+.+...+.+|||||+.........         ..
T Consensus       158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y--~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhier  235 (329)
T TIGR02729       158 ADVGLVGLPNAGKSTLISAVSAAKPKIADY--PFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHIER  235 (329)
T ss_pred             ccEEEEcCCCCCHHHHHHHHhcCCccccCC--CCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHHHh
Confidence            478999999999999999999875322211  2345555555555523378999999999765433221         57


Q ss_pred             ceEEEEEEECCCC---CCHHHHH-HHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363           91 IHAALVVFSVRSR---FSQEEEA-TLHSLQTLFGKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        91 ~~~~l~v~~~~~~---~~~~~~~-~l~~l~~~~~~~~~~~~i~v~~~~D~~~~  139 (240)
                      ++++++|+|+++.   .+.++.. +...+......-...|+++|+||+|....
T Consensus       236 ad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~  288 (329)
T TIGR02729       236 TRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDE  288 (329)
T ss_pred             hCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCCh
Confidence            8999999999843   2333333 33333332111124679999999996543

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.56  E-value=3.2e-14  Score=104.40  Aligned_cols=112  Identities=22%  Similarity=0.174  Sum_probs=71.8

Q ss_pred             EEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEEEEEEE
Q 036363           22 VVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAALVVFS   99 (240)
Q Consensus        22 i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~v~~   99 (240)
                      |+++|++|+|||||+|+|++.........    |.......... ++..+.+|||||...+......  ..+|++++|+|
T Consensus         2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~----t~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d   76 (159)
T cd04159           2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIP----TVGFNMRKVTK-GNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVD   76 (159)
T ss_pred             EEEEcCCCCCHHHHHHHHccCCCCcCccC----CCCcceEEEEE-CCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEE
Confidence            79999999999999999999865332222    22222223334 5677899999998765543333  78899999999


Q ss_pred             CCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363          100 VRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus       100 ~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~  139 (240)
                      +++..+... ...+..+..... ....|+++|+||.|....
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~-~~~~p~iiv~nK~D~~~~  116 (159)
T cd04159          77 AADRTALEAAKNELHDLLEKPS-LEGIPLLVLGNKNDLPGA  116 (159)
T ss_pred             CCCHHHHHHHHHHHHHHHcChh-hcCCCEEEEEeCccccCC
Confidence            984333221 223333322111 123579999999996543

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=99.55  E-value=2.7e-14  Score=110.45  Aligned_cols=113  Identities=23%  Similarity=0.354  Sum_probs=79.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccC--------------CCCCcceeEEEEEEEEe-C--------CcEEEEEeC
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRA--------------SSSGVTSTCEMHRTVLK-D--------GQVVNVIDT   76 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~--------------~~~~~t~~~~~~~~~~~-~--------~~~~~l~Dt   76 (240)
                      ++|+++|+.++|||||+.+|+.........              ...+.|.........+. .        +..+++|||
T Consensus         1 RNvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDT   80 (222)
T cd01885           1 RNICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDS   80 (222)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECC
Confidence            479999999999999999997543211100              01233333333333331 1        567899999


Q ss_pred             CCCCCCCCCCcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363           77 PGLFDFSAGSEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDEL  137 (240)
Q Consensus        77 pG~~~~~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~  137 (240)
                      ||+.++......  ..+|++++|+|+..+.+......++.+..   .  ..|+++++||+|..
T Consensus        81 PG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~---~--~~p~ilviNKiD~~  138 (222)
T cd01885          81 PGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALK---E--RVKPVLVINKIDRL  138 (222)
T ss_pred             CCccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHH---c--CCCEEEEEECCCcc
Confidence            999987664444  99999999999998888887777776653   1  14689999999965

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=99.55  E-value=1.4e-13  Score=103.21  Aligned_cols=111  Identities=14%  Similarity=0.088  Sum_probs=73.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEEEEE
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAALVV   97 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~v   97 (240)
                      .+|+++|+.|+|||||++.+...... ...    .|.......... ....+.+|||||...+...+..  ..+|++++|
T Consensus        14 ~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~----~t~~~~~~~~~~-~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v   87 (175)
T smart00177       14 MRILMVGLDAAGKTTILYKLKLGESV-TTI----PTIGFNVETVTY-KNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFV   87 (175)
T ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCCC-CcC----CccccceEEEEE-CCEEEEEEECCCChhhHHHHHHHhCCCCEEEEE
Confidence            89999999999999999999644321 211    122222333444 6678899999999877654433  889999999


Q ss_pred             EECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363           98 FSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDEL  137 (240)
Q Consensus        98 ~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~  137 (240)
                      +|++++.+..+ ...+..+.... .....|+++|+||.|..
T Consensus        88 ~D~t~~~s~~~~~~~l~~~~~~~-~~~~~piilv~NK~Dl~  127 (175)
T smart00177       88 VDSNDRDRIDEAREELHRMLNED-ELRDAVILVFANKQDLP  127 (175)
T ss_pred             EECCCHHHHHHHHHHHHHHhhCH-hhcCCcEEEEEeCcCcc
Confidence            99986544433 33333332210 01136799999999953

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>PLN03108 Rab family protein; Provisional

Probab=99.55  E-value=5.3e-14  Score=108.59  Aligned_cols=114  Identities=18%  Similarity=0.164  Sum_probs=75.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAAL   95 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~l   95 (240)
                      .+|+|+|++|+|||||++.+++...........+.+..  .....+ ++  ..+.+|||||...+......  ..+|+++
T Consensus         7 ~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~--~~~i~~-~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~v   83 (210)
T PLN03108          7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFG--ARMITI-DNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (210)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEE--EEEEEE-CCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence            79999999999999999999987543332222222221  122233 33  35779999998766544333  7899999


Q ss_pred             EEEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           96 VVFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        96 ~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      +|+|+++..+.... .++..+.....  ...|+++|.||+|...
T Consensus        84 lv~D~~~~~s~~~l~~~~~~~~~~~~--~~~piiiv~nK~Dl~~  125 (210)
T PLN03108         84 LVYDITRRETFNHLASWLEDARQHAN--ANMTIMLIGNKCDLAH  125 (210)
T ss_pred             EEEECCcHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECccCcc
Confidence            99999865555543 34444443322  2467999999999543

>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.55  E-value=8.4e-14  Score=101.69  Aligned_cols=118  Identities=21%  Similarity=0.191  Sum_probs=82.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEEEE
Q 036363           19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAALV   96 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~   96 (240)
                      ..+|+|+|.+|+|||||+-++....+.....++.|.........+.- ....+.+|||.|+..+.+....  ++++++|+
T Consensus         5 ~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~-~~ikfeIWDTAGQERy~slapMYyRgA~AAiv   83 (200)
T KOG0092|consen    5 EFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDD-NTIKFEIWDTAGQERYHSLAPMYYRGANAAIV   83 (200)
T ss_pred             eEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCC-cEEEEEEEEcCCcccccccccceecCCcEEEE
Confidence            37999999999999999988887665433333333333222222211 2346779999999998877666  99999999


Q ss_pred             EEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363           97 VFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        97 v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~  139 (240)
                      |+|+++.-|... +.+++.|.+..+.+  ..+.+|.||+|....
T Consensus        84 vYDit~~~SF~~aK~WvkeL~~~~~~~--~vialvGNK~DL~~~  125 (200)
T KOG0092|consen   84 VYDITDEESFEKAKNWVKELQRQASPN--IVIALVGNKADLLER  125 (200)
T ss_pred             EEecccHHHHHHHHHHHHHHHhhCCCC--eEEEEecchhhhhhc
Confidence            999997666654 67777777654422  235568999996653

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=99.55  E-value=1.8e-14  Score=115.32  Aligned_cols=113  Identities=25%  Similarity=0.307  Sum_probs=78.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCccc--cCCC--------------CCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCC
Q 036363           21 TVVLVGHTGNGKSATGNSILGRRAFKS--RASS--------------SGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSA   84 (240)
Q Consensus        21 ~i~lvG~~g~GKSTlin~l~g~~~~~~--~~~~--------------~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~   84 (240)
                      +|+++|++|+|||||+++|++......  +...              .+.+.........| ++..+++|||||+.++..
T Consensus         1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~-~~~~i~liDtPG~~~f~~   79 (268)
T cd04170           1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEW-KGHKINLIDTPGYADFVG   79 (268)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEE-CCEEEEEEECcCHHHHHH
Confidence            489999999999999999975432111  1110              12333344455666 788999999999987643


Q ss_pred             CCcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363           85 GSEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        85 ~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~  139 (240)
                      ....  ..+|++++|++++.+........++.+..     ...|.++++||+|....
T Consensus        80 ~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~-----~~~p~iivvNK~D~~~~  131 (268)
T cd04170          80 ETRAALRAADAALVVVSAQSGVEVGTEKLWEFADE-----AGIPRIIFINKMDRERA  131 (268)
T ss_pred             HHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHH-----cCCCEEEEEECCccCCC
Confidence            3322  88999999999997777766666665542     12568899999996644

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=99.55  E-value=7.5e-14  Score=104.47  Aligned_cols=112  Identities=19%  Similarity=0.103  Sum_probs=74.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAAL   95 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~l   95 (240)
                      .+|+++|+.|+|||||++++++........+ .  ........... ++  ..+.+|||||...+......  ..+|+++
T Consensus         1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~-t--~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i   76 (173)
T cd04130           1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVP-T--AFDNFSVVVLV-DGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFL   76 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCC-c--eeeeeeEEEEE-CCEEEEEEEEECCCChhhccccccccCCCcEEE
Confidence            3789999999999999999987654322211 1  11111112223 33  36689999999877665544  8899999


Q ss_pred             EEEECCCCCCHHHH--HHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           96 VVFSVRSRFSQEEE--ATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        96 ~v~~~~~~~~~~~~--~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      +|+|++++.+....  .++..+.....   ..|+++|+||+|...
T Consensus        77 ~v~d~~~~~sf~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~  118 (173)
T cd04130          77 LCFSVVNPSSFQNISEKWIPEIRKHNP---KAPIILVGTQADLRT  118 (173)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhhCC---CCCEEEEeeChhhcc
Confidence            99999976666543  34555543221   267999999999543

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>cd04135 Tc10 TC10 subfamily

Probab=99.55  E-value=8e-14  Score=104.31  Aligned_cols=111  Identities=17%  Similarity=0.088  Sum_probs=73.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCc--EEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQ--VVNVIDTPGLFDFSAGSEF--DEIHAAL   95 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~--~~~~~~l   95 (240)
                      .+|+++|++|+|||||++++++............   ......... ++.  .+.+|||||...+......  ...|+++
T Consensus         1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~---~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i   76 (174)
T cd04135           1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF---DHYAVSVTV-GGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFL   76 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee---eeeEEEEEE-CCEEEEEEEEeCCCcccccccccccCCCCCEEE
Confidence            3799999999999999999998764322221111   111112223 333  4679999999887665544  8889999


Q ss_pred             EEEECCCCCCHHHH--HHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363           96 VVFSVRSRFSQEEE--ATLHSLQTLFGKNCFDYMIVVFSGRDEL  137 (240)
Q Consensus        96 ~v~~~~~~~~~~~~--~~l~~l~~~~~~~~~~~~i~v~~~~D~~  137 (240)
                      +|++.+++-+....  .++..+...   ....|+++|+||+|..
T Consensus        77 lv~~~~~~~s~~~~~~~~~~~l~~~---~~~~piivv~nK~Dl~  117 (174)
T cd04135          77 ICFSVVNPASFQNVKEEWVPELKEY---APNVPYLLVGTQIDLR  117 (174)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhh---CCCCCEEEEeEchhhh
Confidence            99999866555543  234444432   2236789999999954

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=99.55  E-value=5.3e-14  Score=108.94  Aligned_cols=111  Identities=17%  Similarity=0.104  Sum_probs=75.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAAL   95 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~l   95 (240)
                      .+|++||.+|+|||||++.+++..++....++.+....   ..... ++  ..+.+|||+|...+......  +.+|+++
T Consensus         2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~---~~~~~-~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~il   77 (222)
T cd04173           2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT---ASFEI-DKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVL   77 (222)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE---EEEEE-CCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEE
Confidence            58999999999999999999987654333222222221   12223 33  36789999999877654444  8999999


Q ss_pred             EEEECCCCCCHHHH-HHHH-HHHHHhCCCcCCeEEEEEeCCCCC
Q 036363           96 VVFSVRSRFSQEEE-ATLH-SLQTLFGKNCFDYMIVVFSGRDEL  137 (240)
Q Consensus        96 ~v~~~~~~~~~~~~-~~l~-~l~~~~~~~~~~~~i~v~~~~D~~  137 (240)
                      +|+|++++.+.... ..|. .+....   ...|+++|.||+|..
T Consensus        78 lvfdis~~~Sf~~i~~~w~~~~~~~~---~~~piiLVgnK~DL~  118 (222)
T cd04173          78 ICFDISRPETLDSVLKKWQGETQEFC---PNAKVVLVGCKLDMR  118 (222)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhhC---CCCCEEEEEECcccc
Confidence            99999977666653 3333 333222   236799999999943

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.54  E-value=3.4e-14  Score=104.90  Aligned_cols=110  Identities=13%  Similarity=0.090  Sum_probs=71.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEEEEEE
Q 036363           21 TVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAALVVF   98 (240)
Q Consensus        21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~v~   98 (240)
                      +|+++|..|+|||||++.+...... ...++.+    ........ ....+.+|||||...+...+..  .++|++++|+
T Consensus         2 kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g----~~~~~~~~-~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~   75 (159)
T cd04150           2 RILMVGLDAAGKTTILYKLKLGEIV-TTIPTIG----FNVETVEY-KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   75 (159)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCC----cceEEEEE-CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence            7999999999999999999655432 2222122    22223334 5678899999999766544333  8899999999


Q ss_pred             ECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363           99 SVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDEL  137 (240)
Q Consensus        99 ~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~  137 (240)
                      |++++.+..+ ...+..+.... .....|+++++||.|..
T Consensus        76 D~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~NK~Dl~  114 (159)
T cd04150          76 DSNDRERIGEAREELQRMLNED-ELRDAVLLVFANKQDLP  114 (159)
T ss_pred             eCCCHHHHHHHHHHHHHHHhcH-HhcCCCEEEEEECCCCC
Confidence            9986544433 22333332110 11136799999999953

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]

Probab=99.54  E-value=1.7e-13  Score=103.63  Aligned_cols=150  Identities=21%  Similarity=0.235  Sum_probs=99.1

Q ss_pred             CCCCCceEEEEEcCCCCcHHHHHHHHhCCCCcccc-----CCCCCcceeEEEEEEEEe-CC--cEEEEEeCCCCCCCCCC
Q 036363           14 SPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSR-----ASSSGVTSTCEMHRTVLK-DG--QVVNVIDTPGLFDFSAG   85 (240)
Q Consensus        14 ~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~-----~~~~~~t~~~~~~~~~~~-~~--~~~~l~DtpG~~~~~~~   85 (240)
                      ...|-..+|++||.+|.|||||+|++.......++     ..+...|........... ++  ..++++|||||.|....
T Consensus        41 mk~GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN  120 (336)
T KOG1547|consen   41 MKTGFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINN  120 (336)
T ss_pred             HhccCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCc
Confidence            34566689999999999999999999765432221     112233333333222221 22  26789999999998766


Q ss_pred             CcC------------------------------CCceEEEEEEECC-CCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCC
Q 036363           86 SEF------------------------------DEIHAALVVFSVR-SRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGR  134 (240)
Q Consensus        86 ~~~------------------------------~~~~~~l~v~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~  134 (240)
                      ...                              ..+|+++|+++++ ..+++.+.++++.|.+.      .+++.|+.|+
T Consensus       121 ~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt~v------vNvvPVIaka  194 (336)
T KOG1547|consen  121 DNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLTEV------VNVVPVIAKA  194 (336)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHhhh------heeeeeEeec
Confidence            544                              7889999999998 56888889999888764      4689999999


Q ss_pred             CCCCCCcccHHHHhcccCCchHHHHHHHhCCcEEEEeCCCcc
Q 036363          135 DELEANDETLEDYLGRECPKPLKEILHLFDNRCVLFDNKTKD  176 (240)
Q Consensus       135 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (240)
                      |.+.     +++...-  .+.++.-+...+..++++.....+
T Consensus       195 DtlT-----leEr~~F--kqrI~~el~~~~i~vYPq~~fded  229 (336)
T KOG1547|consen  195 DTLT-----LEERSAF--KQRIRKELEKHGIDVYPQDSFDED  229 (336)
T ss_pred             cccc-----HHHHHHH--HHHHHHHHHhcCcccccccccccc
Confidence            9663     2222111  123555566666666666655443

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.54  E-value=4.4e-14  Score=108.07  Aligned_cols=113  Identities=22%  Similarity=0.262  Sum_probs=74.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEEEE
Q 036363           21 TVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAALV   96 (240)
Q Consensus        21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~l~   96 (240)
                      +|+++|++|+|||||++++++..........   +.........+ .+  ..+.+|||||...+......  ..+|++++
T Consensus         1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t---~~~~~~~~~~~-~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vil   76 (198)
T cd04147           1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRT---VEEMHRKEYEV-GGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFAL   76 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCc---hhhheeEEEEE-CCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEE
Confidence            5899999999999999999987643221111   11112223333 44  46789999998877654333  78999999


Q ss_pred             EEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           97 VFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        97 v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      |+|+++..+.... .++..+..... ....|+++|+||+|...
T Consensus        77 v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~NK~Dl~~  118 (198)
T cd04147          77 VYAVDDPESFEEVERLREEILEVKE-DKFVPIVVVGNKADSLE  118 (198)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEEcccccc
Confidence            9999865555543 33344444332 23367999999999654

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04155 Arl3 Arl3 subfamily

Probab=99.54  E-value=7.5e-14  Score=104.38  Aligned_cols=115  Identities=17%  Similarity=0.102  Sum_probs=73.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363           18 GVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAAL   95 (240)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l   95 (240)
                      +..+|+++|++|+|||||++.|.+...... ..    |.........+ .+..+.+|||||...+......  ..+|+++
T Consensus        13 ~~~~v~i~G~~g~GKStLl~~l~~~~~~~~-~~----t~g~~~~~i~~-~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii   86 (173)
T cd04155          13 EEPRILILGLDNAGKTTILKQLASEDISHI-TP----TQGFNIKTVQS-DGFKLNVWDIGGQRAIRPYWRNYFENTDCLI   86 (173)
T ss_pred             CccEEEEEccCCCCHHHHHHHHhcCCCccc-CC----CCCcceEEEEE-CCEEEEEEECCCCHHHHHHHHHHhcCCCEEE
Confidence            348999999999999999999998753211 11    22222234444 6778899999998665433222  7789999


Q ss_pred             EEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363           96 VVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        96 ~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~  139 (240)
                      +|+|+.+..+... ...+..+..... ....|+++++||+|....
T Consensus        87 ~v~D~~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~  130 (173)
T cd04155          87 YVIDSADKKRLEEAGAELVELLEEEK-LAGVPVLVFANKQDLATA  130 (173)
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHhChh-hcCCCEEEEEECCCCccC
Confidence            9999985333322 223333322111 123679999999996543

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.54  E-value=5.9e-14  Score=105.19  Aligned_cols=112  Identities=14%  Similarity=0.093  Sum_probs=75.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEEEEE
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAALVV   97 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~v   97 (240)
                      .+|+++|++|+|||||++.+++......     ..|....+....+ .+..+.+|||||...+......  .++|++++|
T Consensus        16 ~kv~~~G~~~~GKTsl~~~l~~~~~~~~-----~~t~~~~~~~~~~-~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V   89 (174)
T cd04153          16 YKVIIVGLDNAGKTTILYQFLLGEVVHT-----SPTIGSNVEEIVY-KNIRFLMWDIGGQESLRSSWNTYYTNTDAVILV   89 (174)
T ss_pred             cEEEEECCCCCCHHHHHHHHccCCCCCc-----CCccccceEEEEE-CCeEEEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence            7999999999999999999987654321     1222233344455 6778999999998766544333  889999999


Q ss_pred             EECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           98 FSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        98 ~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      +|++++.+... ...+..+....+ ....|+++++||+|...
T Consensus        90 ~D~s~~~~~~~~~~~l~~~~~~~~-~~~~p~viv~NK~Dl~~  130 (174)
T cd04153          90 IDSTDRERLPLTKEELYKMLAHED-LRKAVLLVLANKQDLKG  130 (174)
T ss_pred             EECCCHHHHHHHHHHHHHHHhchh-hcCCCEEEEEECCCCCC
Confidence            99985433322 233333322111 12367999999999543

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>cd00880 Era_like Era (E

Probab=99.54  E-value=3.4e-13  Score=98.72  Aligned_cols=110  Identities=26%  Similarity=0.240  Sum_probs=75.9

Q ss_pred             EEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC---------CCceEE
Q 036363           24 LVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF---------DEIHAA   94 (240)
Q Consensus        24 lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~---------~~~~~~   94 (240)
                      ++|+.|+|||||+|+|++........ ..+.+...............+.+|||||+.+.......         ..+|++
T Consensus         1 i~G~~gsGKstl~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i   79 (163)
T cd00880           1 LFGRTNAGKSSLLNALLGQEVAIVSP-VPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLI   79 (163)
T ss_pred             CcCCCCCCHHHHHHHHhCccccccCC-CCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence            58999999999999999876542222 22334333333443322678999999999987765541         889999


Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363           95 LVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        95 l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~  139 (240)
                      ++|+++....+...........     ....|+++|+||+|....
T Consensus        80 l~v~~~~~~~~~~~~~~~~~~~-----~~~~~~ivv~nK~D~~~~  119 (163)
T cd00880          80 LFVVDADLRADEEEEKLLELLR-----ERGKPVLLVLNKIDLLPE  119 (163)
T ss_pred             EEEEeCCCCCCHHHHHHHHHHH-----hcCCeEEEEEEccccCCh
Confidence            9999999666665554222221     123679999999997654

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>cd04151 Arl1 Arl1 subfamily

Probab=99.54  E-value=3.5e-14  Score=104.67  Aligned_cols=111  Identities=13%  Similarity=0.073  Sum_probs=71.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEEEEEE
Q 036363           21 TVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAALVVF   98 (240)
Q Consensus        21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~v~   98 (240)
                      +|+++|++|+|||||++++....... ...    |.......... .+..+.+|||||...+...+..  ..+|++++|+
T Consensus         1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~----t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~   74 (158)
T cd04151           1 RILILGLDNAGKTTILYRLQLGEVVT-TIP----TIGFNVETVTY-KNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVV   74 (158)
T ss_pred             CEEEECCCCCCHHHHHHHHccCCCcC-cCC----ccCcCeEEEEE-CCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEE
Confidence            58999999999999999997655422 111    22222233444 5678899999999876544333  8899999999


Q ss_pred             ECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           99 SVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        99 ~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      |++++.+... ...+..+.... .....|+++|+||+|...
T Consensus        75 d~~~~~~~~~~~~~~~~~~~~~-~~~~~piiiv~nK~Dl~~  114 (158)
T cd04151          75 DSTDRDRLGTAKEELHAMLEEE-ELKGAVLLVFANKQDMPG  114 (158)
T ss_pred             ECCCHHHHHHHHHHHHHHHhch-hhcCCcEEEEEeCCCCCC
Confidence            9985433222 22222222111 112368999999999643

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>cd01870 RhoA_like RhoA-like subfamily

Probab=99.54  E-value=1.1e-13  Score=103.69  Aligned_cols=112  Identities=18%  Similarity=0.134  Sum_probs=73.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAAL   95 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~l   95 (240)
                      .+|+++|++|+|||||++++++...........+...   .....+ ++  ..+.+|||||...+......  ..+|+++
T Consensus         2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~---~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i   77 (175)
T cd01870           2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY---VADIEV-DGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL   77 (175)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccce---EEEEEE-CCEEEEEEEEeCCCchhhhhccccccCCCCEEE
Confidence            5899999999999999999998764322221111111   122233 33  35789999999876654433  7889999


Q ss_pred             EEEECCCCCCHHHH--HHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           96 VVFSVRSRFSQEEE--ATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        96 ~v~~~~~~~~~~~~--~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      +|++++++-+....  .++..+....+   ..|+++|.||+|...
T Consensus        78 ~v~~~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~  119 (175)
T cd01870          78 MCFSIDSPDSLENIPEKWTPEVKHFCP---NVPIILVGNKKDLRN  119 (175)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhhCC---CCCEEEEeeChhccc
Confidence            99999865444432  23344433222   367999999999543

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>cd00876 Ras Ras family

Probab=99.54  E-value=4.3e-14  Score=104.03  Aligned_cols=113  Identities=21%  Similarity=0.219  Sum_probs=73.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeC--CcEEEEEeCCCCCCCCCCCcC--CCceEEEE
Q 036363           21 TVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKD--GQVVNVIDTPGLFDFSAGSEF--DEIHAALV   96 (240)
Q Consensus        21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~   96 (240)
                      +|+++|++|+|||||++++++.... ....+.  +.......... +  ...+.+||+||...+......  ...|++++
T Consensus         1 ki~i~G~~~~GKTsli~~l~~~~~~-~~~~~~--~~~~~~~~~~~-~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   76 (160)
T cd00876           1 KVVVLGAGGVGKSAITIQFVKGTFV-EEYDPT--IEDSYRKTIVV-DGETYTLDILDTAGQEEFSAMRDLYIRQGDGFIL   76 (160)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCC-cCcCCC--hhHeEEEEEEE-CCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEE
Confidence            5899999999999999999987632 222111  11222222333 3  246789999998765443333  78899999


Q ss_pred             EEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           97 VFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        97 v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      |++.++..+..+ ..++..+...... ...|+++|+||+|...
T Consensus        77 v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~  118 (160)
T cd00876          77 VYSITDRESFEEIKGYREQILRVKDD-EDIPIVLVGNKCDLEN  118 (160)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEECCcccc
Confidence            999985544443 3444444444331 3478999999999665

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>PLN00223 ADP-ribosylation factor; Provisional

Probab=99.54  E-value=2.2e-13  Score=102.67  Aligned_cols=111  Identities=13%  Similarity=0.092  Sum_probs=74.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEEEE
Q 036363           19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAALV   96 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~   96 (240)
                      ..+|+++|..|+|||||++.+...... ...    .|.......... .+..+.+|||||...+...+..  .++|++++
T Consensus        17 ~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~----pt~g~~~~~~~~-~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~   90 (181)
T PLN00223         17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTI----PTIGFNVETVEY-KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF   90 (181)
T ss_pred             ccEEEEECCCCCCHHHHHHHHccCCCc-ccc----CCcceeEEEEEE-CCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence            379999999999999999999865432 211    122223333444 6778999999998766544333  88999999


Q ss_pred             EEECCCCCCHHHHHHHHHHHHHhCCC--cCCeEEEEEeCCCCC
Q 036363           97 VFSVRSRFSQEEEATLHSLQTLFGKN--CFDYMIVVFSGRDEL  137 (240)
Q Consensus        97 v~~~~~~~~~~~~~~l~~l~~~~~~~--~~~~~i~v~~~~D~~  137 (240)
                      |+|++++.+..+  ....+...+...  ...|+++|+||.|..
T Consensus        91 V~D~s~~~s~~~--~~~~l~~~l~~~~~~~~piilv~NK~Dl~  131 (181)
T PLN00223         91 VVDSNDRDRVVE--ARDELHRMLNEDELRDAVLLVFANKQDLP  131 (181)
T ss_pred             EEeCCcHHHHHH--HHHHHHHHhcCHhhCCCCEEEEEECCCCC
Confidence            999986544433  122333332211  136799999999953

>CHL00071 tufA elongation factor Tu

Probab=99.54  E-value=5e-14  Score=118.99  Aligned_cols=117  Identities=16%  Similarity=0.242  Sum_probs=83.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCCccc--------------cCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCC
Q 036363           17 NGVRTVVLVGHTGNGKSATGNSILGRRAFKS--------------RASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDF   82 (240)
Q Consensus        17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~--------------~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~   82 (240)
                      .+..+|+++|+.++|||||+++|++......              .....+.|.......+.+ ++..+.++||||+.++
T Consensus        10 ~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~-~~~~~~~iDtPGh~~~   88 (409)
T CHL00071         10 KPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYET-ENRHYAHVDCPGHADY   88 (409)
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEcc-CCeEEEEEECCChHHH
Confidence            3458999999999999999999997532111              011245565555444555 6778899999998755


Q ss_pred             CCCCcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           83 SAGSEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        83 ~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      ......  ..+|++++|+|+..+...++...+..+.. ++   .+++++++||+|...
T Consensus        89 ~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~-~g---~~~iIvvvNK~D~~~  142 (409)
T CHL00071         89 VKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQ-VG---VPNIVVFLNKEDQVD  142 (409)
T ss_pred             HHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHH-cC---CCEEEEEEEccCCCC
Confidence            332222  78999999999997888888777776653 22   355889999999764

>cd04114 Rab30 Rab30 subfamily

Probab=99.54  E-value=5.6e-14  Score=104.59  Aligned_cols=115  Identities=16%  Similarity=0.149  Sum_probs=73.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEE
Q 036363           19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAA   94 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~   94 (240)
                      ..+|+++|++|+|||||++.+++.........  ..+.........+ .+  ..+.+|||||...+......  ..+|++
T Consensus         7 ~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~--t~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~   83 (169)
T cd04114           7 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGA--TIGVDFMIKTVEI-KGEKIKLQIWDTAGQERFRSITQSYYRSANAL   83 (169)
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhCCCCCCCCC--ceeeEEEEEEEEE-CCEEEEEEEEECCCcHHHHHHHHHHhcCCCEE
Confidence            38999999999999999999986543222111  1111222223334 44  35678999998766554333  889999


Q ss_pred             EEEEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           95 LVVFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        95 l~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      ++|+|+++..+.... .++..+.....  ...|+++|.||+|...
T Consensus        84 i~v~d~~~~~s~~~~~~~~~~l~~~~~--~~~~~i~v~NK~D~~~  126 (169)
T cd04114          84 ILTYDITCEESFRCLPEWLREIEQYAN--NKVITILVGNKIDLAE  126 (169)
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEECccccc
Confidence            999999855444432 33333433322  2367899999999543

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.53  E-value=5e-14  Score=103.93  Aligned_cols=111  Identities=14%  Similarity=0.070  Sum_probs=71.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEEEEEE
Q 036363           21 TVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAALVVF   98 (240)
Q Consensus        21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~v~   98 (240)
                      +|+++|++|+|||||++.+++...... .+    |...............+.+|||||...+......  ..+|++++|+
T Consensus         1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~-~~----t~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~   75 (160)
T cd04156           1 QVLLLGLDSAGKSTLLYKLKHAELVTT-IP----TVGFNVEMLQLEKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVV   75 (160)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCcccc-cC----ccCcceEEEEeCCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEE
Confidence            489999999999999999998765322 11    2212222333323567899999998765443332  7889999999


Q ss_pred             ECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363           99 SVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDEL  137 (240)
Q Consensus        99 ~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~  137 (240)
                      |+++..+... ...+..+..... ....|+++|+||+|..
T Consensus        76 D~~~~~~~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~  114 (160)
T cd04156          76 DSSDEARLDESQKELKHILKNEH-IKGVPVVLLANKQDLP  114 (160)
T ss_pred             ECCcHHHHHHHHHHHHHHHhchh-hcCCCEEEEEECcccc
Confidence            9985543332 223333322111 1236899999999954

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.53  E-value=5.1e-13  Score=113.66  Aligned_cols=115  Identities=17%  Similarity=0.084  Sum_probs=75.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC---------CC
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF---------DE   90 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~---------~~   90 (240)
                      ..|+|||.++||||||+|+|++..+..+.  ..++|.......+.+ .+..+.++||||+.........         ..
T Consensus       160 adV~LVG~PNAGKSTLln~Ls~akpkIad--ypfTTl~P~lGvv~~-~~~~f~laDtPGliegas~g~gLg~~fLrhier  236 (500)
T PRK12296        160 ADVGLVGFPSAGKSSLISALSAAKPKIAD--YPFTTLVPNLGVVQA-GDTRFTVADVPGLIPGASEGKGLGLDFLRHIER  236 (500)
T ss_pred             ceEEEEEcCCCCHHHHHHHHhcCCccccc--cCcccccceEEEEEE-CCeEEEEEECCCCccccchhhHHHHHHHHHHHh
Confidence            57999999999999999999987543222  234555555555666 6778999999999754332211         67


Q ss_pred             ceEEEEEEECCCC----CCHHHHHHHH-HHHHHhC---------CCcCCeEEEEEeCCCCC
Q 036363           91 IHAALVVFSVRSR----FSQEEEATLH-SLQTLFG---------KNCFDYMIVVFSGRDEL  137 (240)
Q Consensus        91 ~~~~l~v~~~~~~----~~~~~~~~l~-~l~~~~~---------~~~~~~~i~v~~~~D~~  137 (240)
                      ++++++|+|++..    -...+...+. .|.....         .-...|+++|+||+|..
T Consensus       237 advLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~  297 (500)
T PRK12296        237 CAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVP  297 (500)
T ss_pred             cCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccch
Confidence            8999999999731    1222322222 3332221         11236799999999954

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.53  E-value=1.4e-13  Score=123.65  Aligned_cols=113  Identities=21%  Similarity=0.242  Sum_probs=82.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCc-----------
Q 036363           19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSE-----------   87 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~-----------   87 (240)
                      ..+|+++|.+|+|||||+|+|++....... ...++|.........+ ++..+.+|||||+........           
T Consensus       450 ~~kI~ivG~~nvGKSSLin~l~~~~~~~v~-~~~gtT~d~~~~~~~~-~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~  527 (712)
T PRK09518        450 LRRVALVGRPNVGKSSLLNQLTHEERAVVN-DLAGTTRDPVDEIVEI-DGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQ  527 (712)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCccccccC-CCCCCCcCcceeEEEE-CCCEEEEEECCCcccCcccchhHHHHHHHHHH
Confidence            479999999999999999999997642222 1244555444444555 777889999999864322111           


Q ss_pred             --CCCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           88 --FDEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        88 --~~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                        ...+|++++|+|++.+.+..+...+..+..     ...|+++|+||+|...
T Consensus       528 ~~i~~advvilViDat~~~s~~~~~i~~~~~~-----~~~piIiV~NK~DL~~  575 (712)
T PRK09518        528 AAIERSELALFLFDASQPISEQDLKVMSMAVD-----AGRALVLVFNKWDLMD  575 (712)
T ss_pred             HHhhcCCEEEEEEECCCCCCHHHHHHHHHHHH-----cCCCEEEEEEchhcCC
Confidence              167999999999998899988877766643     1267999999999654

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=99.53  E-value=8.3e-14  Score=103.00  Aligned_cols=114  Identities=21%  Similarity=0.188  Sum_probs=72.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeC--CcEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKD--GQVVNVIDTPGLFDFSAGSEF--DEIHAAL   95 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~--~~~~~~l   95 (240)
                      .+|+++|++|+|||||++++++...........+..   ....... +  ...+.+|||||...+......  ...++++
T Consensus         1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   76 (164)
T cd04139           1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADS---YRKKVVL-DGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFL   76 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhh---EEEEEEE-CCEEEEEEEEECCChhhhhHHHHHHhhcCCEEE
Confidence            379999999999999999999765432211111111   1111222 3  246789999998876554443  7889999


Q ss_pred             EEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           96 VVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        96 ~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      +|++..+.-+... ..++..+..... ....|+++|+||+|...
T Consensus        77 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piiiv~NK~D~~~  119 (164)
T cd04139          77 LVFSITDMESFTATAEFREQILRVKD-DDNVPLLLVGNKCDLED  119 (164)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEEcccccc
Confidence            9999875444333 334444443321 23467999999999654

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=99.53  E-value=4.5e-13  Score=120.37  Aligned_cols=110  Identities=21%  Similarity=0.205  Sum_probs=80.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC-----------
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF-----------   88 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~-----------   88 (240)
                      .+|+++|++|+|||||+|+|+|.....+.  ..+.|.........+ ++..+.++||||++++......           
T Consensus         4 ~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn--~pGvTve~k~g~~~~-~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~   80 (772)
T PRK09554          4 LTIGLIGNPNSGKTTLFNQLTGARQRVGN--WAGVTVERKEGQFST-TDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY   80 (772)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCCCccCC--CCCceEeeEEEEEEc-CceEEEEEECCCccccccccccccHHHHHHHHH
Confidence            68999999999999999999998653322  256777666666666 7788999999999987643220           


Q ss_pred             ---CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363           89 ---DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        89 ---~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~  139 (240)
                         ..+|++++|+|+++ .. .....+..+.+.     ..|+++++||+|..+.
T Consensus        81 l~~~~aD~vI~VvDat~-le-r~l~l~~ql~e~-----giPvIvVlNK~Dl~~~  127 (772)
T PRK09554         81 ILSGDADLLINVVDASN-LE-RNLYLTLQLLEL-----GIPCIVALNMLDIAEK  127 (772)
T ss_pred             HhccCCCEEEEEecCCc-ch-hhHHHHHHHHHc-----CCCEEEEEEchhhhhc
Confidence               47899999999984 22 223334444321     2679999999996543

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.52  E-value=1.7e-13  Score=120.16  Aligned_cols=114  Identities=24%  Similarity=0.314  Sum_probs=82.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCcc-ccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEEEEE
Q 036363           21 TVVLVGHTGNGKSATGNSILGRRAFK-SRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAALVV   97 (240)
Q Consensus        21 ~i~lvG~~g~GKSTlin~l~g~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~v   97 (240)
                      +|+++|+.++|||||+++|+|..... ......+.|....+....+ ++..+.+|||||+..+......  .++|++++|
T Consensus         2 ~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~-~~~~v~~iDtPGhe~f~~~~~~g~~~aD~aILV   80 (581)
T TIGR00475         2 IIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPL-PDYRLGFIDVPGHEKFISNAIAGGGGIDAALLV   80 (581)
T ss_pred             EEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEe-CCEEEEEEECCCHHHHHHHHHhhhccCCEEEEE
Confidence            68999999999999999999854210 1122346677776666666 6688999999998766433222  789999999


Q ss_pred             EECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363           98 FSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        98 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~  139 (240)
                      +|++++...+....+..+. .++   .+++++|+||+|....
T Consensus        81 VDa~~G~~~qT~ehl~il~-~lg---i~~iIVVlNK~Dlv~~  118 (581)
T TIGR00475        81 VDADEGVMTQTGEHLAVLD-LLG---IPHTIVVITKADRVNE  118 (581)
T ss_pred             EECCCCCcHHHHHHHHHHH-HcC---CCeEEEEEECCCCCCH
Confidence            9999777677666665443 222   3559999999996543

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.52  E-value=6.5e-14  Score=105.90  Aligned_cols=112  Identities=11%  Similarity=0.039  Sum_probs=73.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEEEE
Q 036363           19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAALV   96 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~   96 (240)
                      ..+|+++|++|+|||||++.+++.... ...+    |.........+ ++..+.+|||||...+......  ..+|++++
T Consensus        17 ~~~i~ivG~~~~GKTsli~~l~~~~~~-~~~~----t~~~~~~~~~~-~~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~   90 (184)
T smart00178       17 HAKILFLGLDNAGKTTLLHMLKNDRLA-QHQP----TQHPTSEELAI-GNIKFTTFDLGGHQQARRLWKDYFPEVNGIVY   90 (184)
T ss_pred             cCEEEEECCCCCCHHHHHHHHhcCCCc-ccCC----ccccceEEEEE-CCEEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence            389999999999999999999986532 1111    22222233444 6778899999998765433333  88999999


Q ss_pred             EEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363           97 VFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDEL  137 (240)
Q Consensus        97 v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~  137 (240)
                      |+|+++..+... ...+..+..... ....|+++|+||.|..
T Consensus        91 vvD~~~~~~~~~~~~~l~~l~~~~~-~~~~piliv~NK~Dl~  131 (184)
T smart00178       91 LVDAYDKERFAESKRELDALLSDEE-LATVPFLILGNKIDAP  131 (184)
T ss_pred             EEECCcHHHHHHHHHHHHHHHcChh-hcCCCEEEEEeCcccc
Confidence            999985432222 223333322111 1236799999999954

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=99.52  E-value=8.5e-14  Score=105.05  Aligned_cols=110  Identities=11%  Similarity=0.098  Sum_probs=72.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEEEEE
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAALVV   97 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~v   97 (240)
                      .+|+++|++|+|||||++.+...... ...    .|.......... .+..+.+|||||...+...+..  ..+|++++|
T Consensus        18 ~kv~lvG~~~vGKTsli~~~~~~~~~-~~~----~T~~~~~~~~~~-~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v   91 (182)
T PTZ00133         18 VRILMVGLDAAGKTTILYKLKLGEVV-TTI----PTIGFNVETVEY-KNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFV   91 (182)
T ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCcc-ccC----CccccceEEEEE-CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEE
Confidence            89999999999999999999754432 211    122223333444 6778999999998766544333  889999999


Q ss_pred             EECCCCCCHHHHHHHHHHHHHhCCC--cCCeEEEEEeCCCCC
Q 036363           98 FSVRSRFSQEEEATLHSLQTLFGKN--CFDYMIVVFSGRDEL  137 (240)
Q Consensus        98 ~~~~~~~~~~~~~~l~~l~~~~~~~--~~~~~i~v~~~~D~~  137 (240)
                      +|++++.+..+.  ...+...+...  ..+|+++|+||.|..
T Consensus        92 ~D~t~~~s~~~~--~~~l~~~~~~~~~~~~piilv~NK~Dl~  131 (182)
T PTZ00133         92 VDSNDRERIGDA--REELERMLSEDELRDAVLLVFANKQDLP  131 (182)
T ss_pred             EeCCCHHHHHHH--HHHHHHHHhCHhhcCCCEEEEEeCCCCC
Confidence            999854433331  12222222221  236799999999953

>KOG0394 consensus Ras-related GTPase [General function prediction only]

Probab=99.52  E-value=4.9e-13  Score=96.92  Aligned_cols=116  Identities=15%  Similarity=0.168  Sum_probs=81.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceE
Q 036363           18 GVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHA   93 (240)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~   93 (240)
                      ...+|+++|.+|+|||||+|.+....+......+.|......  .+.+ ++  ..+.+|||.|...|.+....  +++|+
T Consensus         8 ~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltK--ev~V-d~~~vtlQiWDTAGQERFqsLg~aFYRgaDc   84 (210)
T KOG0394|consen    8 TLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTK--EVQV-DDRSVTLQIWDTAGQERFQSLGVAFYRGADC   84 (210)
T ss_pred             cceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheee--EEEE-cCeEEEEEEEecccHHHhhhcccceecCCce
Confidence            348999999999999999999998765443333333332222  2223 33  36789999999999877666  99999


Q ss_pred             EEEEEECCCCCCHHHHHHHHH-HHHHhC--CCcCCeEEEEEeCCCC
Q 036363           94 ALVVFSVRSRFSQEEEATLHS-LQTLFG--KNCFDYMIVVFSGRDE  136 (240)
Q Consensus        94 ~l~v~~~~~~~~~~~~~~l~~-l~~~~~--~~~~~~~i~v~~~~D~  136 (240)
                      +++|+++++.-+.+....|+. +...-.  ....-|+|++.||.|.
T Consensus        85 Cvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~  130 (210)
T KOG0394|consen   85 CVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDV  130 (210)
T ss_pred             EEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccC
Confidence            999999997777776555542 222222  2234579999999994

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=99.52  E-value=6.9e-14  Score=105.29  Aligned_cols=114  Identities=22%  Similarity=0.223  Sum_probs=74.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAAL   95 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~l   95 (240)
                      .+|+++|++|+|||||++.+++........+..+...   ...... .+  ..+.+|||||...+......  ...++++
T Consensus         2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~---~~~~~~-~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i   77 (180)
T cd04137           2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF---SKIIRY-KGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYI   77 (180)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE---EEEEEE-CCEEEEEEEEECCChHhhHHHHHHHHhhCCEEE
Confidence            6899999999999999999997654322221111111   122222 33  35689999998776544333  7899999


Q ss_pred             EEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           96 VVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        96 ~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      +|++.++..+.+. ..++..+....+. ...|+++++||+|...
T Consensus        78 ~v~d~~~~~~~~~~~~~~~~~~~~~~~-~~~p~ilv~NK~Dl~~  120 (180)
T cd04137          78 LVYSVTSRKSFEVVKVIYDKILDMLGK-ESVPIVLVGNKSDLHT  120 (180)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEEchhhhh
Confidence            9999986555444 3444555554332 2357999999999543

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>cd04143 Rhes_like Rhes_like subfamily

Probab=99.52  E-value=1.6e-13  Score=108.24  Aligned_cols=114  Identities=21%  Similarity=0.186  Sum_probs=75.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEEEE
Q 036363           21 TVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAALV   96 (240)
Q Consensus        21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~l~   96 (240)
                      +|+++|..|+|||||++.+++...........+   ......+.. ++  ..+.+|||+|...+......  ..+|++++
T Consensus         2 KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~---d~~~k~~~i-~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIl   77 (247)
T cd04143           2 RMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE---DFHRKLYSI-RGEVYQLDILDTSGNHPFPAMRRLSILTGDVFIL   77 (247)
T ss_pred             EEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh---HhEEEEEEE-CCEEEEEEEEECCCChhhhHHHHHHhccCCEEEE
Confidence            799999999999999999987654322211111   111122233 33  46789999998877654433  78999999


Q ss_pred             EEECCCCCCHHHH-HHHHHHHHHh-------CCCcCCeEEEEEeCCCCCC
Q 036363           97 VFSVRSRFSQEEE-ATLHSLQTLF-------GKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        97 v~~~~~~~~~~~~-~~l~~l~~~~-------~~~~~~~~i~v~~~~D~~~  138 (240)
                      |+|++++.+.++. .++..+....       ......|+++|+||+|...
T Consensus        78 Vfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~  127 (247)
T cd04143          78 VFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDF  127 (247)
T ss_pred             EEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchh
Confidence            9999976665543 4444554321       0112468999999999543

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>PRK12735 elongation factor Tu; Reviewed

Probab=99.51  E-value=1.2e-13  Score=116.13  Aligned_cols=116  Identities=18%  Similarity=0.240  Sum_probs=80.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCcc--------------ccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCC
Q 036363           18 GVRTVVLVGHTGNGKSATGNSILGRRAFK--------------SRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFS   83 (240)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~--------------~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~   83 (240)
                      +..+|+++|+.++|||||+++|++.....              ......+.|.......+.+ ++..+.++||||+.++.
T Consensus        11 ~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~-~~~~i~~iDtPGh~~f~   89 (396)
T PRK12735         11 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYET-ANRHYAHVDCPGHADYV   89 (396)
T ss_pred             CeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcC-CCcEEEEEECCCHHHHH
Confidence            44899999999999999999998631100              0111346666665555555 66788999999987654


Q ss_pred             CCCcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           84 AGSEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        84 ~~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      .....  ..+|++++|+++..+......+.+..+.. .+   .+++++++||+|...
T Consensus        90 ~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~-~g---i~~iivvvNK~Dl~~  142 (396)
T PRK12735         90 KNMITGAAQMDGAILVVSAADGPMPQTREHILLARQ-VG---VPYIVVFLNKCDMVD  142 (396)
T ss_pred             HHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHH-cC---CCeEEEEEEecCCcc
Confidence            32222  78899999999987677776666655542 22   344567899999654

>TIGR00484 EF-G translation elongation factor EF-G

Probab=99.51  E-value=1.5e-13  Score=123.20  Aligned_cols=118  Identities=23%  Similarity=0.276  Sum_probs=88.9

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhCCCCccc-------c---------CCCCCcceeEEEEEEEEeCCcEEEEEeCCCC
Q 036363           16 SNGVRTVVLVGHTGNGKSATGNSILGRRAFKS-------R---------ASSSGVTSTCEMHRTVLKDGQVVNVIDTPGL   79 (240)
Q Consensus        16 ~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~-------~---------~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~   79 (240)
                      ....++|+++|+.++|||||+++|++......       +         ....+.|.........| ++..+++|||||+
T Consensus         7 ~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~-~~~~i~liDTPG~   85 (689)
T TIGR00484         7 LNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFW-KGHRINIIDTPGH   85 (689)
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEE-CCeEEEEEECCCC
Confidence            44568999999999999999999974322110       0         01246677777777888 8899999999999


Q ss_pred             CCCCCCCcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363           80 FDFSAGSEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        80 ~~~~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~  139 (240)
                      .++......  ..+|++++|+|+..+....+...+..+...     ..|+++++||+|....
T Consensus        86 ~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~-----~~p~ivviNK~D~~~~  142 (689)
T TIGR00484        86 VDFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRY-----EVPRIAFVNKMDKTGA  142 (689)
T ss_pred             cchhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHc-----CCCEEEEEECCCCCCC
Confidence            987654333  889999999999987888777777765432     2568899999997654

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=99.51  E-value=8e-14  Score=122.00  Aligned_cols=113  Identities=21%  Similarity=0.335  Sum_probs=86.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCC-ccc-c------------CCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCC
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRA-FKS-R------------ASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAG   85 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~-~~~-~------------~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~   85 (240)
                      ++|+++|+.++|||||+++|+.... +.. +            ....+.|.......+.| ++..+++|||||+.+|...
T Consensus         2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~-~~~kinlIDTPGh~DF~~e   80 (594)
T TIGR01394         2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRY-NGTKINIVDTPGHADFGGE   80 (594)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEE-CCEEEEEEECCCHHHHHHH
Confidence            6899999999999999999985321 111 1            11246777777777888 8899999999999988654


Q ss_pred             CcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           86 SEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        86 ~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      ...  ..+|++++|+|+..+...+....+..+...     ..|+++++||+|...
T Consensus        81 v~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~-----~ip~IVviNKiD~~~  130 (594)
T TIGR01394        81 VERVLGMVDGVLLLVDASEGPMPQTRFVLKKALEL-----GLKPIVVINKIDRPS  130 (594)
T ss_pred             HHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHC-----CCCEEEEEECCCCCC
Confidence            443  889999999999877777777777776542     245799999999643

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>COG2229 Predicted GTPase [General function prediction only]

Probab=99.51  E-value=4.7e-13  Score=97.33  Aligned_cols=116  Identities=19%  Similarity=0.251  Sum_probs=90.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccc-----cCCCCC---cceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--C
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKS-----RASSSG---VTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--D   89 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~-----~~~~~~---~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~   89 (240)
                      -+|+++|+.|+||||+++.++.......     .....+   +|+...+.++...++..+++++|||+..|.-.++.  +
T Consensus        11 ~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~fm~~~l~~   90 (187)
T COG2229          11 TKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERFKFMWEILSR   90 (187)
T ss_pred             eeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHHHHHHHHHhC
Confidence            6999999999999999999987764222     222223   66667777777745589999999999999877776  8


Q ss_pred             CceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363           90 EIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        90 ~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~  139 (240)
                      +..++++++|.+...+.++...+..+...    ...|+++.+||.|....
T Consensus        91 ga~gaivlVDss~~~~~~a~~ii~f~~~~----~~ip~vVa~NK~DL~~a  136 (187)
T COG2229          91 GAVGAIVLVDSSRPITFHAEEIIDFLTSR----NPIPVVVAINKQDLFDA  136 (187)
T ss_pred             CcceEEEEEecCCCcchHHHHHHHHHhhc----cCCCEEEEeeccccCCC
Confidence            99999999999977777777777777543    22679999999995543

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.51  E-value=3.6e-13  Score=113.13  Aligned_cols=114  Identities=19%  Similarity=0.118  Sum_probs=76.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC---------CCc
Q 036363           21 TVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF---------DEI   91 (240)
Q Consensus        21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~---------~~~   91 (240)
                      .|+|||.++||||||+|+|++..+-.+.  ...+|.......+.+.++..+.++||||+.........         ..+
T Consensus       160 dVglVG~pNaGKSTLLn~Lt~ak~kIa~--ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier~  237 (424)
T PRK12297        160 DVGLVGFPNVGKSTLLSVVSNAKPKIAN--YHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIERT  237 (424)
T ss_pred             cEEEEcCCCCCHHHHHHHHHcCCCcccc--CCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHHhhC
Confidence            8999999999999999999987642222  23456666666566633678999999999764333211         678


Q ss_pred             eEEEEEEECCCC---CCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCC
Q 036363           92 HAALVVFSVRSR---FSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDE  136 (240)
Q Consensus        92 ~~~l~v~~~~~~---~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~  136 (240)
                      +++++|+|+++.   -+..+ ..+...+..........|+++|+||+|.
T Consensus       238 ~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL  286 (424)
T PRK12297        238 RVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDL  286 (424)
T ss_pred             CEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCC
Confidence            999999999732   23333 2333444433221234689999999994

>PRK12736 elongation factor Tu; Reviewed

Probab=99.51  E-value=2.1e-13  Score=114.72  Aligned_cols=116  Identities=16%  Similarity=0.239  Sum_probs=83.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCcc--------------ccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCC
Q 036363           18 GVRTVVLVGHTGNGKSATGNSILGRRAFK--------------SRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFS   83 (240)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~--------------~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~   83 (240)
                      +..+|+++|+.++|||||+++|++.....              ......+.|.......+.. ++..+.++||||+.++.
T Consensus        11 ~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~-~~~~i~~iDtPGh~~f~   89 (394)
T PRK12736         11 PHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYET-EKRHYAHVDCPGHADYV   89 (394)
T ss_pred             CeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecC-CCcEEEEEECCCHHHHH
Confidence            44899999999999999999998742110              0111346666665555544 66788999999987664


Q ss_pred             CCCcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           84 AGSEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        84 ~~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      .....  ..+|++++|+|+..+....+...+..+... +   .+++++++||+|...
T Consensus        90 ~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~-g---~~~~IvviNK~D~~~  142 (394)
T PRK12736         90 KNMITGAAQMDGAILVVAATDGPMPQTREHILLARQV-G---VPYLVVFLNKVDLVD  142 (394)
T ss_pred             HHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHc-C---CCEEEEEEEecCCcc
Confidence            33222  778999999999877778877777766532 2   355789999999653

>cd04167 Snu114p Snu114p subfamily

Probab=99.51  E-value=5.8e-14  Score=108.64  Aligned_cols=113  Identities=19%  Similarity=0.267  Sum_probs=75.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCcccc-----------------CCCCCcceeEEEEEEEEe----CCcEEEEEeCCC
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSR-----------------ASSSGVTSTCEMHRTVLK----DGQVVNVIDTPG   78 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~-----------------~~~~~~t~~~~~~~~~~~----~~~~~~l~DtpG   78 (240)
                      ++|+++|+.|+|||||+++|++.......                 ....+.+.........+.    ....+.+|||||
T Consensus         1 rnv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG   80 (213)
T cd04167           1 RNVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPG   80 (213)
T ss_pred             CcEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCC
Confidence            47999999999999999999865432110                 011223333332333331    235789999999


Q ss_pred             CCCCCCCCcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363           79 LFDFSAGSEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDEL  137 (240)
Q Consensus        79 ~~~~~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~  137 (240)
                      +.++......  ..+|++++|+|+....+......+..+..   .  ..|+++|+||+|.+
T Consensus        81 ~~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~---~--~~p~iiviNK~D~~  136 (213)
T cd04167          81 HVNFMDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAIL---E--GLPIVLVINKIDRL  136 (213)
T ss_pred             CcchHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHH---c--CCCEEEEEECcccC
Confidence            9887543332  88999999999987776665555554432   1  15799999999975

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.51  E-value=7.1e-14  Score=123.94  Aligned_cols=114  Identities=18%  Similarity=0.271  Sum_probs=82.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEe---CCcEEEEEeCCCCCCCCCCCcC--CCceE
Q 036363           19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLK---DGQVVNVIDTPGLFDFSAGSEF--DEIHA   93 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~~l~DtpG~~~~~~~~~~--~~~~~   93 (240)
                      .++|+++|+.++|||||+++|++.......  ..+.|.....+...+.   .+..+++|||||+..|......  ..+|+
T Consensus       244 ~p~V~IvGhvdvGKTSLld~L~~~~~~~~e--~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDi  321 (742)
T CHL00189        244 PPIVTILGHVDHGKTTLLDKIRKTQIAQKE--AGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDI  321 (742)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhccCcccc--CCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCE
Confidence            379999999999999999999986653322  1344444444444442   2468999999999887655443  88999


Q ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363           94 ALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        94 ~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~  139 (240)
                      +++|++++++...+....+..+..     ...|+++++||+|....
T Consensus       322 aILVVDA~dGv~~QT~E~I~~~k~-----~~iPiIVViNKiDl~~~  362 (742)
T CHL00189        322 AILIIAADDGVKPQTIEAINYIQA-----ANVPIIVAINKIDKANA  362 (742)
T ss_pred             EEEEEECcCCCChhhHHHHHHHHh-----cCceEEEEEECCCcccc
Confidence            999999987777777666666532     22579999999996543

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=99.50  E-value=2.9e-13  Score=119.03  Aligned_cols=144  Identities=21%  Similarity=0.292  Sum_probs=94.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCcc-ccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEEEEE
Q 036363           21 TVVLVGHTGNGKSATGNSILGRRAFK-SRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAALVV   97 (240)
Q Consensus        21 ~i~lvG~~g~GKSTlin~l~g~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~v   97 (240)
                      .|+++|+.++|||||+++|+|..... ......+.|....+......++..+.+|||||+.++......  .++|++++|
T Consensus         2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lLV   81 (614)
T PRK10512          2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHALLV   81 (614)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHHHHHHHHHhhcCCEEEEE
Confidence            68999999999999999999854211 112234667766655554435667899999999776432222  789999999


Q ss_pred             EECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCCcccHHHHhcccCCchHHHHHHHhC---CcEEEEeCCC
Q 036363           98 FSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEANDETLEDYLGRECPKPLKEILHLFD---NRCVLFDNKT  174 (240)
Q Consensus        98 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~  174 (240)
                      ++++.++..++...+..+. .++   .+++++|+||+|.....  .++.....     +..++...+   .+++.++...
T Consensus        82 Vda~eg~~~qT~ehl~il~-~lg---i~~iIVVlNKiDlv~~~--~~~~v~~e-----i~~~l~~~~~~~~~ii~VSA~t  150 (614)
T PRK10512         82 VACDDGVMAQTREHLAILQ-LTG---NPMLTVALTKADRVDEA--RIAEVRRQ-----VKAVLREYGFAEAKLFVTAATE  150 (614)
T ss_pred             EECCCCCcHHHHHHHHHHH-HcC---CCeEEEEEECCccCCHH--HHHHHHHH-----HHHHHHhcCCCCCcEEEEeCCC
Confidence            9999888888777776553 233   35578999999965432  33332222     444444333   3455666554


Q ss_pred             c
Q 036363          175 K  175 (240)
Q Consensus       175 ~  175 (240)
                      .
T Consensus       151 G  151 (614)
T PRK10512        151 G  151 (614)
T ss_pred             C
Confidence            3

>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.50  E-value=1.2e-13  Score=102.26  Aligned_cols=114  Identities=22%  Similarity=0.221  Sum_probs=85.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCc--EEEEEeCCCCCCCCCCCcC--CCceEE
Q 036363           19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQ--VVNVIDTPGLFDFSAGSEF--DEIHAA   94 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~--~~~~~~   94 (240)
                      ..+|+++|.+|+|||-|+.+++...+.....++.|..  .......+ ++.  ...+|||.|+..+......  +++.++
T Consensus        14 lFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGve--f~t~t~~v-d~k~vkaqIWDTAGQERyrAitSaYYrgAvGA   90 (222)
T KOG0087|consen   14 LFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVE--FATRTVNV-DGKTVKAQIWDTAGQERYRAITSAYYRGAVGA   90 (222)
T ss_pred             EEEEEEeCCCccchhHHHHHhcccccCcccccceeEE--EEeeceee-cCcEEEEeeecccchhhhccccchhhccccee
Confidence            3789999999999999999998877644444434333  33333444 444  5589999999999866655  999999


Q ss_pred             EEEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363           95 LVVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDEL  137 (240)
Q Consensus        95 l~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~  137 (240)
                      ++|+|++.+.+.+. .++|+.|+.+...  ...+++|.||+|+-
T Consensus        91 llVYDITr~~Tfenv~rWL~ELRdhad~--nivimLvGNK~DL~  132 (222)
T KOG0087|consen   91 LLVYDITRRQTFENVERWLKELRDHADS--NIVIMLVGNKSDLN  132 (222)
T ss_pred             EEEEechhHHHHHHHHHHHHHHHhcCCC--CeEEEEeecchhhh
Confidence            99999998888876 4666677666433  46789999999943

>PLN00023 GTP-binding protein; Provisional

Probab=99.50  E-value=3.6e-13  Score=108.24  Aligned_cols=118  Identities=16%  Similarity=0.139  Sum_probs=80.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEe--------------CCcEEEEEeCCCCCCCCC
Q 036363           19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLK--------------DGQVVNVIDTPGLFDFSA   84 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~--------------~~~~~~l~DtpG~~~~~~   84 (240)
                      ..+|+++|..|+|||||++.+++.........+.+.+...  ..+.+.              ....+.||||+|...+..
T Consensus        21 ~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~i--k~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfrs   98 (334)
T PLN00023         21 QVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGV--KHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYKD   98 (334)
T ss_pred             ceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEE--EEEEECCcccccccccccCCceEEEEEEECCCChhhhh
Confidence            4899999999999999999999876433323333333222  222221              123578999999988876


Q ss_pred             CCcC--CCceEEEEEEECCCCCCHHHH-HHHHHHHHHhCC----------CcCCeEEEEEeCCCCCC
Q 036363           85 GSEF--DEIHAALVVFSVRSRFSQEEE-ATLHSLQTLFGK----------NCFDYMIVVFSGRDELE  138 (240)
Q Consensus        85 ~~~~--~~~~~~l~v~~~~~~~~~~~~-~~l~~l~~~~~~----------~~~~~~i~v~~~~D~~~  138 (240)
                      ....  .+++++|+|+|++++.+.... .++..+......          ....+++||.||+|+..
T Consensus        99 L~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~  165 (334)
T PLN00023         99 CRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAP  165 (334)
T ss_pred             hhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccc
Confidence            6555  899999999999976666553 455555544210          11357999999999543

>TIGR00485 EF-Tu translation elongation factor TU

Probab=99.50  E-value=2e-13  Score=114.90  Aligned_cols=117  Identities=15%  Similarity=0.230  Sum_probs=82.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCC------cc--------ccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCC
Q 036363           17 NGVRTVVLVGHTGNGKSATGNSILGRRA------FK--------SRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDF   82 (240)
Q Consensus        17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~------~~--------~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~   82 (240)
                      .+..+|+++|+.++|||||+++|++...      +.        ......+.|.......+.. ++..+.+|||||+.++
T Consensus        10 ~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~-~~~~~~liDtpGh~~f   88 (394)
T TIGR00485        10 KPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYET-ENRHYAHVDCPGHADY   88 (394)
T ss_pred             CceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcC-CCEEEEEEECCchHHH
Confidence            3458999999999999999999985311      00        0011246666665555544 5678999999999876


Q ss_pred             CCCCcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           83 SAGSEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        83 ~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      ......  ..+|++++|+++..+....+.+.+..+...    ..+++++++||+|...
T Consensus        89 ~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~----gi~~iIvvvNK~Dl~~  142 (394)
T TIGR00485        89 VKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQV----GVPYIVVFLNKCDMVD  142 (394)
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHc----CCCEEEEEEEecccCC
Confidence            533222  778999999999877777777777766432    2355668899999664

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.50  E-value=1.3e-13  Score=105.36  Aligned_cols=108  Identities=19%  Similarity=0.119  Sum_probs=72.5

Q ss_pred             EcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEe-CCcEEEEEeCCCCCCCCCCCcC--CCceEEEEEEECC
Q 036363           25 VGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLK-DGQVVNVIDTPGLFDFSAGSEF--DEIHAALVVFSVR  101 (240)
Q Consensus        25 vG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~v~~~~  101 (240)
                      +|..|+|||||+++++..........+.+.+.  ....+.+. ....+.+|||||...+......  +++|++++|+|++
T Consensus         1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~--~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t   78 (200)
T smart00176        1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEV--HPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVT   78 (200)
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEE--EEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECC
Confidence            69999999999999996553222222122222  11222221 2347889999999888765554  8899999999999


Q ss_pred             CCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363          102 SRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDEL  137 (240)
Q Consensus       102 ~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~  137 (240)
                      ++.+.... .++..+.....   ..|+++|.||+|..
T Consensus        79 ~~~S~~~i~~w~~~i~~~~~---~~piilvgNK~Dl~  112 (200)
T smart00176       79 ARVTYKNVPNWHRDLVRVCE---NIPIVLCGNKVDVK  112 (200)
T ss_pred             ChHHHHHHHHHHHHHHHhCC---CCCEEEEEECcccc
Confidence            77777654 44444555432   36899999999953

Ran is involved in the active transport of proteins through nuclear pores.

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=99.49  E-value=2.3e-13  Score=101.32  Aligned_cols=109  Identities=19%  Similarity=0.226  Sum_probs=71.1

Q ss_pred             EEEEcCCCCcHHHHHHHHhCCCCccccCCCCCccee-EEEE---------------------------------------
Q 036363           22 VVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTST-CEMH---------------------------------------   61 (240)
Q Consensus        22 i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~-~~~~---------------------------------------   61 (240)
                      |+++|..++|||||+|+|+|....+.+..+...... ..+.                                       
T Consensus         1 V~v~G~~ssGKSTliNaLlG~~ilp~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (168)
T PF00350_consen    1 VAVVGQFSSGKSTLINALLGRPILPSGVGPCTAVPTEISYGDEPEIEHEEAIIEFKDGSEEFEELNELREQIDEEFDSIE   80 (168)
T ss_dssp             EEEEEBTTSSHHHHHHHHHTSS-SSSSSSSTTSSEEEEEEEESSSCCTSEEEECEEEETEEBCCHHHHHHHHHHHHHHHH
T ss_pred             CEEEcCCCCCHHHHHHHHHhcccCcccccccccceeEEEecccCccccccccccccccccchhhHHHHHHhhhccccccc
Confidence            789999999999999999998755544332111100 0000                                       


Q ss_pred             -------------EEEEeCCcEEEEEeCCCCCCCCCCCcC------CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCC
Q 036363           62 -------------RTVLKDGQVVNVIDTPGLFDFSAGSEF------DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKN  122 (240)
Q Consensus        62 -------------~~~~~~~~~~~l~DtpG~~~~~~~~~~------~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~  122 (240)
                                   .........+.++||||+.+.......      ...|+++||+++...++..+...+......    
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~----  156 (168)
T PF00350_consen   81 GKLEQISSKVIVISISSPLLRNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDP----  156 (168)
T ss_dssp             TSSS-S-SSEEEEEEEETTSCSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTT----
T ss_pred             ccccccccceeEEeeccccccceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcC----
Confidence                         000102246889999999875444323      999999999999977777776666665532    


Q ss_pred             cCCeEEEEEeCC
Q 036363          123 CFDYMIVVFSGR  134 (240)
Q Consensus       123 ~~~~~i~v~~~~  134 (240)
                      ....+++|+||+
T Consensus       157 ~~~~~i~V~nk~  168 (168)
T PF00350_consen  157 DKSRTIFVLNKA  168 (168)
T ss_dssp             TCSSEEEEEE-G
T ss_pred             CCCeEEEEEcCC
Confidence            234589999984

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.49  E-value=6.2e-13  Score=97.22  Aligned_cols=115  Identities=25%  Similarity=0.277  Sum_probs=72.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAAL   95 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~l   95 (240)
                      .+|+++|++|+|||||++.+++...+....  .+.+.......... ++  ..+.+|||||...+......  ...+.++
T Consensus         2 ~ki~~~G~~~~GKstl~~~l~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i   78 (161)
T TIGR00231         2 IKIVIVGDPNVGKSTLLNRLLGNKFITEYK--PGTTRNYVTTVIEE-DGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSL   78 (161)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCCCcCcCC--CCceeeeeEEEEEE-CCEEEEEEEEECCCcccchHHHHHHHhhhhEEE
Confidence            689999999999999999999987332222  23333333333444 55  57889999997666443322  5566677


Q ss_pred             EEEECCCC-CCHHH--HHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363           96 VVFSVRSR-FSQEE--EATLHSLQTLFGKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        96 ~v~~~~~~-~~~~~--~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~  139 (240)
                      +++|.... .+..+  ......+......  ..|+++++||+|....
T Consensus        79 ~~~d~~~~v~~~~~~~~~~~~~~~~~~~~--~~p~ivv~nK~D~~~~  123 (161)
T TIGR00231        79 RVFDIVILVLDVEEILEKQTKEIIHHAES--NVPIILVGNKIDLRDA  123 (161)
T ss_pred             EEEEEeeeehhhhhHhHHHHHHHHHhccc--CCcEEEEEEcccCCcc
Confidence            77776533 22222  2333344433322  3679999999996543

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.49  E-value=3.3e-13  Score=104.56  Aligned_cols=114  Identities=20%  Similarity=0.130  Sum_probs=71.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEE-eCCcEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363           19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVL-KDGQVVNVIDTPGLFDFSAGSEF--DEIHAAL   95 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l   95 (240)
                      ..+|+++|++|||||||++.++..........+.+.....  ..... .+...+.+|||||...+......  ...++++
T Consensus         9 ~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~--~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~i   86 (215)
T PTZ00132          9 EFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHP--LKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQCAI   86 (215)
T ss_pred             CceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEE--EEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCEEE
Confidence            3899999999999999997554433222222222222211  11111 12347789999998776544433  6789999


Q ss_pred             EEEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363           96 VVFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDEL  137 (240)
Q Consensus        96 ~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~  137 (240)
                      +|++++++.+.... .++..+.....   ..|+++++||+|..
T Consensus        87 ~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~i~lv~nK~Dl~  126 (215)
T PTZ00132         87 IMFDVTSRITYKNVPNWHRDIVRVCE---NIPIVLVGNKVDVK  126 (215)
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhCC---CCCEEEEEECccCc
Confidence            99999876666553 34444443322   25688899999953

>PRK10218 GTP-binding protein; Provisional

Probab=99.49  E-value=3.2e-13  Score=118.21  Aligned_cols=114  Identities=21%  Similarity=0.289  Sum_probs=86.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCC-cccc-------------CCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCC
Q 036363           19 VRTVVLVGHTGNGKSATGNSILGRRA-FKSR-------------ASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSA   84 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g~~~-~~~~-------------~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~   84 (240)
                      .++|+++|+.++|||||+++|+.... +...             ....+.|.......+.| ++..+++|||||+.++..
T Consensus         5 iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~-~~~~inliDTPG~~df~~   83 (607)
T PRK10218          5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKW-NDYRINIVDTPGHADFGG   83 (607)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEec-CCEEEEEEECCCcchhHH
Confidence            48999999999999999999996322 1111             11345666666666777 888999999999999876


Q ss_pred             CCcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           85 GSEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        85 ~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      ....  ..+|++++|+|+..+...+....+..+...     ..|.++++||+|...
T Consensus        84 ~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~-----gip~IVviNKiD~~~  134 (607)
T PRK10218         84 EVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAY-----GLKPIVVINKVDRPG  134 (607)
T ss_pred             HHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHc-----CCCEEEEEECcCCCC
Confidence            5444  899999999999877777777777666432     245789999999653

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=99.49  E-value=1.8e-13  Score=106.29  Aligned_cols=113  Identities=20%  Similarity=0.277  Sum_probs=76.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCcc-----------------------------ccCCCCCcceeEEEEEEEEeCCcEE
Q 036363           21 TVVLVGHTGNGKSATGNSILGRRAFK-----------------------------SRASSSGVTSTCEMHRTVLKDGQVV   71 (240)
Q Consensus        21 ~i~lvG~~g~GKSTlin~l~g~~~~~-----------------------------~~~~~~~~t~~~~~~~~~~~~~~~~   71 (240)
                      +|+++|+.|+|||||+.+|+......                             ......+.|.......+.+ .+..+
T Consensus         1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~-~~~~i   79 (219)
T cd01883           1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFET-EKYRF   79 (219)
T ss_pred             CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEee-CCeEE
Confidence            48999999999999999986321110                             0111245666666677777 88899


Q ss_pred             EEEeCCCCCCCCCCCcC--CCceEEEEEEECCCC-------CCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           72 NVIDTPGLFDFSAGSEF--DEIHAALVVFSVRSR-------FSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        72 ~l~DtpG~~~~~~~~~~--~~~~~~l~v~~~~~~-------~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      .+|||||+.++......  ..+|++++|+|+++.       ...+....+..+ ..++   .+|+++++||+|...
T Consensus        80 ~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~iiivvNK~Dl~~  151 (219)
T cd01883          80 TILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLA-RTLG---VKQLIVAVNKMDDVT  151 (219)
T ss_pred             EEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHH-HHcC---CCeEEEEEEcccccc
Confidence            99999998765432222  779999999999853       222333433333 2222   267899999999663

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>PRK00007 elongation factor G; Reviewed

Probab=99.48  E-value=1.4e-13  Score=123.27  Aligned_cols=118  Identities=22%  Similarity=0.270  Sum_probs=89.0

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhCCCC---ccccC-------------CCCCcceeEEEEEEEEeCCcEEEEEeCCCC
Q 036363           16 SNGVRTVVLVGHTGNGKSATGNSILGRRA---FKSRA-------------SSSGVTSTCEMHRTVLKDGQVVNVIDTPGL   79 (240)
Q Consensus        16 ~~~~~~i~lvG~~g~GKSTlin~l~g~~~---~~~~~-------------~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~   79 (240)
                      ....++|+|+|+.++|||||+++|+....   .....             ...+.|.........| .+..++++||||+
T Consensus         7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~-~~~~~~liDTPG~   85 (693)
T PRK00007          7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFW-KDHRINIIDTPGH   85 (693)
T ss_pred             ccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEE-CCeEEEEEeCCCc
Confidence            44568999999999999999999973221   10000             1346677777777778 8899999999999


Q ss_pred             CCCCCCCcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363           80 FDFSAGSEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        80 ~~~~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~  139 (240)
                      .++......  ..+|++++|+|+..+...++...+..+...     ..|+++++||+|....
T Consensus        86 ~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~-----~~p~iv~vNK~D~~~~  142 (693)
T PRK00007         86 VDFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKY-----KVPRIAFVNKMDRTGA  142 (693)
T ss_pred             HHHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHc-----CCCEEEEEECCCCCCC
Confidence            877553222  888999999999988888888888877642     2457899999997754

>PLN03127 Elongation factor Tu; Provisional

Probab=99.48  E-value=3.4e-13  Score=114.61  Aligned_cols=116  Identities=16%  Similarity=0.199  Sum_probs=83.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCC------cc--------ccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCC
Q 036363           18 GVRTVVLVGHTGNGKSATGNSILGRRA------FK--------SRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFS   83 (240)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlin~l~g~~~------~~--------~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~   83 (240)
                      +..+|+++|+.++|||||+++|++...      ..        ......+.|.......+.+ ++..+.++||||+.++.
T Consensus        60 ~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~-~~~~i~~iDtPGh~~f~  138 (447)
T PLN03127         60 PHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYET-AKRHYAHVDCPGHADYV  138 (447)
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcC-CCeEEEEEECCCccchH
Confidence            458999999999999999999974310      00        0111256677766666665 67789999999997654


Q ss_pred             CCCcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           84 AGSEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        84 ~~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      .....  ..+|++++|+|+..+...++.+.+..+... +   .+.+++++||+|...
T Consensus       139 ~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~-g---ip~iIvviNKiDlv~  191 (447)
T PLN03127        139 KNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQV-G---VPSLVVFLNKVDVVD  191 (447)
T ss_pred             HHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHc-C---CCeEEEEEEeeccCC
Confidence            33222  779999999999877778777777766532 2   244688999999764

>PRK04213 GTP-binding protein; Provisional

Probab=99.48  E-value=8.7e-13  Score=101.13  Aligned_cols=109  Identities=22%  Similarity=0.198  Sum_probs=67.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCc----------
Q 036363           18 GVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSE----------   87 (240)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~----------   87 (240)
                      ...+|+++|++|+|||||+|+|++.... .+. ..+.|....  ...+ .  .+.+|||||+........          
T Consensus         8 ~~~~i~i~G~~~~GKSsLin~l~~~~~~-~~~-~~~~t~~~~--~~~~-~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~   80 (201)
T PRK04213          8 RKPEIVFVGRSNVGKSTLVRELTGKKVR-VGK-RPGVTRKPN--HYDW-G--DFILTDLPGFGFMSGVPKEVQEKIKDEI   80 (201)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCc-cCC-CCceeeCce--EEee-c--ceEEEeCCccccccccCHHHHHHHHHHH
Confidence            4489999999999999999999987632 222 223343322  2223 2  688999999754332110          


Q ss_pred             -------CCCceEEEEEEECCCCCC-----------HHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           88 -------FDEIHAALVVFSVRSRFS-----------QEEEATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        88 -------~~~~~~~l~v~~~~~~~~-----------~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                             ...++++++|+|......           ..+...+..+..     ...|+++|+||+|...
T Consensus        81 ~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~p~iiv~NK~Dl~~  144 (201)
T PRK04213         81 VRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE-----LGIPPIVAVNKMDKIK  144 (201)
T ss_pred             HHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH-----cCCCeEEEEECccccC
Confidence                   035678889998863211           122333333321     1257899999999543

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.48  E-value=1.2e-12  Score=102.45  Aligned_cols=79  Identities=22%  Similarity=0.274  Sum_probs=57.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCc---------CCCc
Q 036363           21 TVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSE---------FDEI   91 (240)
Q Consensus        21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~---------~~~~   91 (240)
                      +|+++|++|+|||||+|+|+|.......  ..+.|..+......+ ++..+.+|||||+........         .+.+
T Consensus         2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~--~~~tT~~~~~g~~~~-~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~a   78 (233)
T cd01896           2 RVALVGFPSVGKSTLLSKLTNTKSEVAA--YEFTTLTCVPGVLEY-KGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTA   78 (233)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCccccC--CCCccccceEEEEEE-CCeEEEEEECCCcccccccchhHHHHHHHhhccC
Confidence            6899999999999999999997643222  133444444445556 788899999999876542111         1789


Q ss_pred             eEEEEEEECCC
Q 036363           92 HAALVVFSVRS  102 (240)
Q Consensus        92 ~~~l~v~~~~~  102 (240)
                      |++++|+|+++
T Consensus        79 d~il~V~D~t~   89 (233)
T cd01896          79 DLILMVLDATK   89 (233)
T ss_pred             CEEEEEecCCc
Confidence            99999999873

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>PRK00049 elongation factor Tu; Reviewed

Probab=99.48  E-value=3.4e-13  Score=113.40  Aligned_cols=116  Identities=18%  Similarity=0.248  Sum_probs=82.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCcc--------------ccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCC
Q 036363           18 GVRTVVLVGHTGNGKSATGNSILGRRAFK--------------SRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFS   83 (240)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~--------------~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~   83 (240)
                      +..+|+++|+.++|||||+++|++.....              ......+.|.......+.+ ++..+.++||||+.++.
T Consensus        11 ~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~-~~~~i~~iDtPG~~~f~   89 (396)
T PRK00049         11 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYET-EKRHYAHVDCPGHADYV   89 (396)
T ss_pred             CEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcC-CCeEEEEEECCCHHHHH
Confidence            44899999999999999999998732100              0011345666665555555 66788999999987654


Q ss_pred             CCCcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           84 AGSEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        84 ~~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      .....  ..+|++++|+|+..+....+...+..+... +   .+.+++++||+|...
T Consensus        90 ~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~-g---~p~iiVvvNK~D~~~  142 (396)
T PRK00049         90 KNMITGAAQMDGAILVVSAADGPMPQTREHILLARQV-G---VPYIVVFLNKCDMVD  142 (396)
T ss_pred             HHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHc-C---CCEEEEEEeecCCcc
Confidence            33222  889999999999877888877777766532 2   243456899999754

>PRK12739 elongation factor G; Reviewed

Probab=99.47  E-value=1.5e-13  Score=123.07  Aligned_cols=117  Identities=25%  Similarity=0.324  Sum_probs=88.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCCccc--c--------------CCCCCcceeEEEEEEEEeCCcEEEEEeCCCCC
Q 036363           17 NGVRTVVLVGHTGNGKSATGNSILGRRAFKS--R--------------ASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLF   80 (240)
Q Consensus        17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~--~--------------~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~   80 (240)
                      ...++|+++|+.++|||||+++|+.......  +              ....+.|.........| ++..++++||||+.
T Consensus         6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~-~~~~i~liDTPG~~   84 (691)
T PRK12739          6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFW-KGHRINIIDTPGHV   84 (691)
T ss_pred             cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEE-CCEEEEEEcCCCHH
Confidence            3458999999999999999999975321100  0              01346777777777888 88999999999998


Q ss_pred             CCCCCCcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363           81 DFSAGSEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        81 ~~~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~  139 (240)
                      ++......  ..+|++++|+|+..+....+...+..+...     ..|+++++||+|....
T Consensus        85 ~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~-----~~p~iv~iNK~D~~~~  140 (691)
T PRK12739         85 DFTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKY-----GVPRIVFVNKMDRIGA  140 (691)
T ss_pred             HHHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHc-----CCCEEEEEECCCCCCC
Confidence            76553332  888999999999988888888887776532     2467899999997754

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.47  E-value=6.3e-13  Score=96.31  Aligned_cols=112  Identities=21%  Similarity=0.195  Sum_probs=71.1

Q ss_pred             EEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEe---CCcEEEEEeCCCCCCCCCCCcC--CCceEEEEEE
Q 036363           24 LVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLK---DGQVVNVIDTPGLFDFSAGSEF--DEIHAALVVF   98 (240)
Q Consensus        24 lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~v~   98 (240)
                      ++|++|+|||||+|.|++.........   .|. .........   .+..+.+||+||..........  ..+|++++|+
T Consensus         1 iiG~~~~GKStl~~~l~~~~~~~~~~~---~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~   76 (157)
T cd00882           1 VVGDSGVGKTSLLNRLLGGEFVPEEYE---TTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVY   76 (157)
T ss_pred             CCCcCCCcHHHHHHHHHhCCcCCcccc---cch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEE
Confidence            589999999999999998765222111   111 222222221   2557899999998876554333  8899999999


Q ss_pred             ECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363           99 SVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        99 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~  139 (240)
                      +++...+......+.............|+++++||+|....
T Consensus        77 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~  117 (157)
T cd00882          77 DVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEE  117 (157)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccc
Confidence            99865555544433111111113334789999999996544

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>TIGR00503 prfC peptide chain release factor 3

Probab=99.47  E-value=3.3e-13  Score=116.67  Aligned_cols=115  Identities=18%  Similarity=0.224  Sum_probs=81.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCcc--ccC------------------CCCCcceeEEEEEEEEeCCcEEEEEeCC
Q 036363           18 GVRTVVLVGHTGNGKSATGNSILGRRAFK--SRA------------------SSSGVTSTCEMHRTVLKDGQVVNVIDTP   77 (240)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~--~~~------------------~~~~~t~~~~~~~~~~~~~~~~~l~Dtp   77 (240)
                      ..++|+++|+.++|||||++.|+......  .+.                  ...+.+.........+ ++..+++||||
T Consensus        10 ~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~-~~~~inliDTP   88 (527)
T TIGR00503        10 KRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPY-RDCLVNLLDTP   88 (527)
T ss_pred             cCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEee-CCeEEEEEECC
Confidence            44899999999999999999986321111  010                  0124455555566677 88899999999


Q ss_pred             CCCCCCCCCcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           78 GLFDFSAGSEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        78 G~~~~~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      |+.++......  ..+|++++|+|+..+........++.+..     ...|+++++||+|...
T Consensus        89 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~-----~~~PiivviNKiD~~~  146 (527)
T TIGR00503        89 GHEDFSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRL-----RDTPIFTFMNKLDRDI  146 (527)
T ss_pred             ChhhHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHh-----cCCCEEEEEECccccC
Confidence            99877643322  88999999999987776666666654432     1257999999999653

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>cd04129 Rho2 Rho2 subfamily

Probab=99.47  E-value=7.3e-13  Score=100.42  Aligned_cols=110  Identities=19%  Similarity=0.154  Sum_probs=72.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEE-EEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEE
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM-HRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAA   94 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~   94 (240)
                      .+|+++|++|+|||||+++++..........    |....+ ....+ .+  ..+.+|||||...+......  ..+|++
T Consensus         2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~----t~~~~~~~~~~~-~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~   76 (187)
T cd04129           2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHP----TVFENYVTDCRV-DGKPVQLALWDTAGQEEYERLRPLSYSKAHVI   76 (187)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCC----cccceEEEEEEE-CCEEEEEEEEECCCChhccccchhhcCCCCEE
Confidence            5899999999999999999985543322111    111111 12223 33  34689999998766543322  788999


Q ss_pred             EEEEECCCCCCHHHH--HHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363           95 LVVFSVRSRFSQEEE--ATLHSLQTLFGKNCFDYMIVVFSGRDEL  137 (240)
Q Consensus        95 l~v~~~~~~~~~~~~--~~l~~l~~~~~~~~~~~~i~v~~~~D~~  137 (240)
                      ++++++++.-+....  .++..+....+   ..|+++|.||+|..
T Consensus        77 llv~~i~~~~s~~~~~~~~~~~i~~~~~---~~piilvgnK~Dl~  118 (187)
T cd04129          77 LIGFAVDTPDSLENVRTKWIEEVRRYCP---NVPVILVGLKKDLR  118 (187)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEeeChhhh
Confidence            999999865555543  35555554332   26899999999953

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.47  E-value=4.8e-13  Score=99.41  Aligned_cols=144  Identities=17%  Similarity=0.155  Sum_probs=100.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCc--EEEEEeCCCCCCCCCCCcC--CCceE
Q 036363           18 GVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQ--VVNVIDTPGLFDFSAGSEF--DEIHA   93 (240)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~--~~~~~   93 (240)
                      ...+|+++|.+|+|||.++-++....+..+...+.|..  ........ ++.  .+.+|||.|...+.+....  +++++
T Consensus        11 ~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGID--Fk~kti~l-~g~~i~lQiWDtaGQerf~ti~~sYyrgA~g   87 (207)
T KOG0078|consen   11 YLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGID--FKIKTIEL-DGKKIKLQIWDTAGQERFRTITTAYYRGAMG   87 (207)
T ss_pred             eEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEE--EEEEEEEe-CCeEEEEEEEEcccchhHHHHHHHHHhhcCe
Confidence            34899999999999999999998776544444333333  33334444 433  6689999999999877666  99999


Q ss_pred             EEEEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCCcccHHHHhcccCCchHHHHHHHhCCcEEEEeC
Q 036363           94 ALVVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELEANDETLEDYLGRECPKPLKEILHLFDNRCVLFDN  172 (240)
Q Consensus        94 ~l~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (240)
                      +++|+|+++..+.+. ..+++.+.+.-..  ..+.++|.||+|.-...  .       -..+.-..+....+.+++..+.
T Consensus        88 i~LvyDitne~Sfeni~~W~~~I~e~a~~--~v~~~LvGNK~D~~~~R--~-------V~~e~ge~lA~e~G~~F~EtSA  156 (207)
T KOG0078|consen   88 ILLVYDITNEKSFENIRNWIKNIDEHASD--DVVKILVGNKCDLEEKR--Q-------VSKERGEALAREYGIKFFETSA  156 (207)
T ss_pred             eEEEEEccchHHHHHHHHHHHHHHhhCCC--CCcEEEeeccccccccc--c-------ccHHHHHHHHHHhCCeEEEccc
Confidence            999999998888776 4667777665333  46799999999944321  1       1123334556666777776666


Q ss_pred             CCc
Q 036363          173 KTK  175 (240)
Q Consensus       173 ~~~  175 (240)
                      ...
T Consensus       157 k~~  159 (207)
T KOG0078|consen  157 KTN  159 (207)
T ss_pred             cCC
Confidence            544

>PLN03126 Elongation factor Tu; Provisional

Probab=99.47  E-value=2.8e-13  Score=115.76  Aligned_cols=117  Identities=15%  Similarity=0.223  Sum_probs=85.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCCcc--------------ccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCC
Q 036363           17 NGVRTVVLVGHTGNGKSATGNSILGRRAFK--------------SRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDF   82 (240)
Q Consensus        17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~--------------~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~   82 (240)
                      .+..+|+++|+.++|||||+++|++.....              ......+.|.......+.+ ++..+.++||||+.++
T Consensus        79 k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~-~~~~i~liDtPGh~~f  157 (478)
T PLN03126         79 KPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYET-ENRHYAHVDCPGHADY  157 (478)
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEec-CCcEEEEEECCCHHHH
Confidence            345899999999999999999998632110              1122245666665555666 7788999999999887


Q ss_pred             CCCCcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           83 SAGSEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        83 ~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      ......  ..+|++++|+|+..+......+.+..+.. ++   .+++++++||+|...
T Consensus       158 ~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~-~g---i~~iIvvvNK~Dl~~  211 (478)
T PLN03126        158 VKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQ-VG---VPNMVVFLNKQDQVD  211 (478)
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHH-cC---CCeEEEEEecccccC
Confidence            543333  78899999999997887777777766543 22   355889999999654

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=99.47  E-value=4.6e-13  Score=115.83  Aligned_cols=148  Identities=19%  Similarity=0.323  Sum_probs=96.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCc--cccC------------------CCCCcceeEEEEEEEEeCCcEEEEEeCC
Q 036363           18 GVRTVVLVGHTGNGKSATGNSILGRRAF--KSRA------------------SSSGVTSTCEMHRTVLKDGQVVNVIDTP   77 (240)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~--~~~~------------------~~~~~t~~~~~~~~~~~~~~~~~l~Dtp   77 (240)
                      ..++|+|+|+.|+|||||++.|+.....  ..+.                  ...+.+.......+.+ ++..+++||||
T Consensus         9 ~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~-~~~~inliDTP   87 (526)
T PRK00741          9 KRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPY-RDCLINLLDTP   87 (526)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEE-CCEEEEEEECC
Confidence            4589999999999999999999632111  0000                  0123445555556667 88899999999


Q ss_pred             CCCCCCCCCcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCCc----ccHHHHhccc
Q 036363           78 GLFDFSAGSEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEAND----ETLEDYLGRE  151 (240)
Q Consensus        78 G~~~~~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~~----~~~~~~~~~~  151 (240)
                      |+.++......  ..+|++++|+|++.+........+..+..     ...|+++++||+|......    ..+++.+...
T Consensus        88 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~-----~~iPiiv~iNK~D~~~a~~~~~l~~i~~~l~~~  162 (526)
T PRK00741         88 GHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRL-----RDTPIFTFINKLDRDGREPLELLDEIEEVLGIA  162 (526)
T ss_pred             CchhhHHHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHh-----cCCCEEEEEECCcccccCHHHHHHHHHHHhCCC
Confidence            99887653333  88999999999987777666666655432     2257999999999654331    1233333221


Q ss_pred             C---------CchHHHHHHHhCCcEEEEe
Q 036363          152 C---------PKPLKEILHLFDNRCVLFD  171 (240)
Q Consensus       152 ~---------~~~~~~~~~~~~~~~~~~~  171 (240)
                      .         ...++++++....+.+.|.
T Consensus       163 ~~p~~~Pig~~~~f~Gvvdl~~~~~~~~~  191 (526)
T PRK00741        163 CAPITWPIGMGKRFKGVYDLYNDEVELYQ  191 (526)
T ss_pred             CeeEEeccccCCceeEEEEeecceeeecc
Confidence            0         2334555566666666664

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.46  E-value=8.8e-14  Score=102.81  Aligned_cols=139  Identities=20%  Similarity=0.221  Sum_probs=87.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCc--EEEEEeCCCCCCCCCCCcC--CCceEEEE
Q 036363           21 TVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQ--VVNVIDTPGLFDFSAGSEF--DEIHAALV   96 (240)
Q Consensus        21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~--~~~~~~l~   96 (240)
                      +|+++|+.|+|||||++.+.+...........+.  ......... ++.  .+.+||++|...+......  ..+|++++
T Consensus         1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~--~~~~~~~~~-~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii   77 (162)
T PF00071_consen    1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGI--DSYSKEVSI-DGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIII   77 (162)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSE--EEEEEEEEE-TTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEE
T ss_pred             CEEEECCCCCCHHHHHHHHHhhcccccccccccc--ccccccccc-cccccccccccccccccccccccccccccccccc
Confidence            6899999999999999999987654333222222  222223333 333  5789999997655432222  89999999


Q ss_pred             EEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCCCCCcccHHHHhcccCCchHHHHHHHhCCcEEEEeCC
Q 036363           97 VFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDELEANDETLEDYLGRECPKPLKEILHLFDNRCVLFDNK  173 (240)
Q Consensus        97 v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (240)
                      |++.+++-+.... .++..+....+  ...|++++.||.|........         ......+....+..|...+..
T Consensus        78 ~fd~~~~~S~~~~~~~~~~i~~~~~--~~~~iivvg~K~D~~~~~~v~---------~~~~~~~~~~~~~~~~e~Sa~  144 (162)
T PF00071_consen   78 VFDVTDEESFENLKKWLEEIQKYKP--EDIPIIVVGNKSDLSDEREVS---------VEEAQEFAKELGVPYFEVSAK  144 (162)
T ss_dssp             EEETTBHHHHHTHHHHHHHHHHHST--TTSEEEEEEETTTGGGGSSSC---------HHHHHHHHHHTTSEEEEEBTT
T ss_pred             ccccccccccccccccccccccccc--ccccceeeeccccccccccch---------hhHHHHHHHHhCCEEEEEECC
Confidence            9999866555543 44455554443  236899999999954322111         122355566666666666654

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=99.46  E-value=4.7e-13  Score=114.71  Aligned_cols=118  Identities=15%  Similarity=0.208  Sum_probs=81.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCCccc--------------cC-----------------CCCCcceeEEEEEEEE
Q 036363           17 NGVRTVVLVGHTGNGKSATGNSILGRRAFKS--------------RA-----------------SSSGVTSTCEMHRTVL   65 (240)
Q Consensus        17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~--------------~~-----------------~~~~~t~~~~~~~~~~   65 (240)
                      ....+|+++|+.++|||||+++|+.......              +.                 ...+.|....+....+
T Consensus        25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~  104 (474)
T PRK05124         25 KSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFST  104 (474)
T ss_pred             cCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEecc
Confidence            4558999999999999999999985532111              10                 0134566666666666


Q ss_pred             eCCcEEEEEeCCCCCCCCCCCcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363           66 KDGQVVNVIDTPGLFDFSAGSEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        66 ~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~  139 (240)
                       ++..+.++||||+.++......  ..+|++++|+|+..+....+...+..+ ..++   .+++++++||+|....
T Consensus       105 -~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~-~~lg---~~~iIvvvNKiD~~~~  175 (474)
T PRK05124        105 -EKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIA-TLLG---IKHLVVAVNKMDLVDY  175 (474)
T ss_pred             -CCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHH-HHhC---CCceEEEEEeeccccc
Confidence             7788999999998766432222  889999999999876665554444333 2333   2578999999997643

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.46  E-value=2.3e-12  Score=96.60  Aligned_cols=115  Identities=12%  Similarity=0.087  Sum_probs=81.3

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEE
Q 036363           17 NGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAA   94 (240)
Q Consensus        17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~   94 (240)
                      ....+|+++|+.||||||+++.|.......     ...|.......+.+ .+..+.+||.+|...+...+..  ..+|++
T Consensus        12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~-----~~pT~g~~~~~i~~-~~~~~~~~d~gG~~~~~~~w~~y~~~~~~i   85 (175)
T PF00025_consen   12 KKEIKILILGLDGSGKTTLLNRLKNGEISE-----TIPTIGFNIEEIKY-KGYSLTIWDLGGQESFRPLWKSYFQNADGI   85 (175)
T ss_dssp             TSEEEEEEEESTTSSHHHHHHHHHSSSEEE-----EEEESSEEEEEEEE-TTEEEEEEEESSSGGGGGGGGGGHTTESEE
T ss_pred             CcEEEEEEECCCccchHHHHHHhhhccccc-----cCcccccccceeee-CcEEEEEEeccccccccccceeecccccee
Confidence            345899999999999999999998754322     22244445555666 8889999999998877666666  899999


Q ss_pred             EEEEECCCCCCHH-HHHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           95 LVVFSVRSRFSQE-EEATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        95 l~v~~~~~~~~~~-~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      +||+|.++.-... ....+..+.... .....|+++++||.|...
T Consensus        86 IfVvDssd~~~l~e~~~~L~~ll~~~-~~~~~piLIl~NK~D~~~  129 (175)
T PF00025_consen   86 IFVVDSSDPERLQEAKEELKELLNDP-ELKDIPILILANKQDLPD  129 (175)
T ss_dssp             EEEEETTGGGGHHHHHHHHHHHHTSG-GGTTSEEEEEEESTTSTT
T ss_pred             EEEEecccceeecccccchhhhcchh-hcccceEEEEeccccccC
Confidence            9999998543332 234444443321 112478999999999544

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=99.46  E-value=5.9e-13  Score=113.29  Aligned_cols=116  Identities=23%  Similarity=0.316  Sum_probs=78.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccc-----------------------------cCCCCCcceeEEEEEEEEeCC
Q 036363           18 GVRTVVLVGHTGNGKSATGNSILGRRAFKS-----------------------------RASSSGVTSTCEMHRTVLKDG   68 (240)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~-----------------------------~~~~~~~t~~~~~~~~~~~~~   68 (240)
                      +..+|+++|+.++|||||+++|+.......                             .....+.|.........+ ++
T Consensus         6 ~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~-~~   84 (426)
T TIGR00483         6 EHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFET-DK   84 (426)
T ss_pred             ceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEcc-CC
Confidence            348999999999999999999984221100                             011236677766666666 77


Q ss_pred             cEEEEEeCCCCCCCCCCCcC--CCceEEEEEEECCCC---CCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           69 QVVNVIDTPGLFDFSAGSEF--DEIHAALVVFSVRSR---FSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        69 ~~~~l~DtpG~~~~~~~~~~--~~~~~~l~v~~~~~~---~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      ..+.+|||||+.++......  ..+|++++|+|++++   ........+. +...++   .+++++++||+|...
T Consensus        85 ~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~-~~~~~~---~~~iIVviNK~Dl~~  155 (426)
T TIGR00483        85 YEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAF-LARTLG---INQLIVAINKMDSVN  155 (426)
T ss_pred             eEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHH-HHHHcC---CCeEEEEEEChhccC
Confidence            88999999998776432222  789999999999866   2222222222 222333   257999999999654

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.46  E-value=2.8e-13  Score=103.89  Aligned_cols=114  Identities=16%  Similarity=0.152  Sum_probs=69.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEE---eCCcEEEEEeCCCCCCCCCCCcC--CCc-eEE
Q 036363           21 TVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVL---KDGQVVNVIDTPGLFDFSAGSEF--DEI-HAA   94 (240)
Q Consensus        21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~~~l~DtpG~~~~~~~~~~--~~~-~~~   94 (240)
                      +|+++|++|+|||||++.|.+.....+..+.     .........   ..+..+.+|||||+..+......  ... +++
T Consensus         2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~-----~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~v   76 (203)
T cd04105           2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSI-----EPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGI   76 (203)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccCcE-----eecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEE
Confidence            6899999999999999999987543222111     111111111   13567899999999876433222  555 999


Q ss_pred             EEEEECCCCC-CHHH-HHHHHHHHHHh-CCCcCCeEEEEEeCCCCCCC
Q 036363           95 LVVFSVRSRF-SQEE-EATLHSLQTLF-GKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        95 l~v~~~~~~~-~~~~-~~~l~~l~~~~-~~~~~~~~i~v~~~~D~~~~  139 (240)
                      +||+|+.... +..+ ...+..+.... ......|++++.||+|....
T Consensus        77 V~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a  124 (203)
T cd04105          77 VFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTA  124 (203)
T ss_pred             EEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhccc
Confidence            9999998442 1121 22222222111 11124689999999997644

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=99.45  E-value=5.6e-13  Score=112.46  Aligned_cols=115  Identities=16%  Similarity=0.185  Sum_probs=81.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccc--------------c-----------------CCCCCcceeEEEEEEEEeCC
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKS--------------R-----------------ASSSGVTSTCEMHRTVLKDG   68 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~--------------~-----------------~~~~~~t~~~~~~~~~~~~~   68 (240)
                      .+|+++|+.++|||||++.|+.......              +                 ....+.|.........+ ++
T Consensus         1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~-~~   79 (406)
T TIGR02034         1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFST-DK   79 (406)
T ss_pred             CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEcc-CC
Confidence            3799999999999999999974432110              0                 01235566666666666 77


Q ss_pred             cEEEEEeCCCCCCCCCCCcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363           69 QVVNVIDTPGLFDFSAGSEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        69 ~~~~l~DtpG~~~~~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~  139 (240)
                      ..+.++||||+.++......  ..+|++++|+|+..+...+..+.+..+. .++   .+++++++||+|....
T Consensus        80 ~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~-~~~---~~~iivviNK~D~~~~  148 (406)
T TIGR02034        80 RKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIAS-LLG---IRHVVLAVNKMDLVDY  148 (406)
T ss_pred             eEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHH-HcC---CCcEEEEEEecccccc
Confidence            89999999998876432222  8899999999998777776665555443 223   3568999999997643

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.45  E-value=4.5e-13  Score=98.73  Aligned_cols=97  Identities=22%  Similarity=0.271  Sum_probs=62.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC------CCceE
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF------DEIHA   93 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~------~~~~~   93 (240)
                      .+|+++|++|+|||||+|.|.|.....      ..+.     ...+ ...  .+|||||+.........      ..+|+
T Consensus         2 ~~i~~iG~~~~GKstl~~~l~~~~~~~------~~~~-----~v~~-~~~--~~iDtpG~~~~~~~~~~~~~~~~~~ad~   67 (158)
T PRK15467          2 KRIAFVGAVGAGKTTLFNALQGNYTLA------RKTQ-----AVEF-NDK--GDIDTPGEYFSHPRWYHALITTLQDVDM   67 (158)
T ss_pred             cEEEEECCCCCCHHHHHHHHcCCCccC------ccce-----EEEE-CCC--CcccCCccccCCHHHHHHHHHHHhcCCE
Confidence            479999999999999999999864211      1111     1222 222  27999998654432221      78999


Q ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363           94 ALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDEL  137 (240)
Q Consensus        94 ~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~  137 (240)
                      +++|+|++...+....    ++... ..  ..|+++++||+|..
T Consensus        68 il~v~d~~~~~s~~~~----~~~~~-~~--~~~ii~v~nK~Dl~  104 (158)
T PRK15467         68 LIYVHGANDPESRLPA----GLLDI-GV--SKRQIAVISKTDMP  104 (158)
T ss_pred             EEEEEeCCCcccccCH----HHHhc-cC--CCCeEEEEEccccC
Confidence            9999999855443222    12221 11  25689999999953

>PRK09866 hypothetical protein; Provisional

Probab=99.44  E-value=3.4e-11  Score=103.88  Aligned_cols=67  Identities=18%  Similarity=0.238  Sum_probs=50.5

Q ss_pred             cEEEEEeCCCCCCCCCCC--cC-----CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           69 QVVNVIDTPGLFDFSAGS--EF-----DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        69 ~~~~l~DtpG~~~~~~~~--~~-----~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      ..+.++||||+.......  ..     ..+|+++||+|++...+..+..+++.+... +.  ..|+++|+||+|...
T Consensus       230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~-~K--~~PVILVVNKIDl~d  303 (741)
T PRK09866        230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDEEVREAILAV-GQ--SVPLYVLVNKFDQQD  303 (741)
T ss_pred             CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHHHHHHHHHhc-CC--CCCEEEEEEcccCCC
Confidence            467899999998654321  11     889999999999877888888887777542 11  137999999999764

>COG2262 HflX GTPases [General function prediction only]

Probab=99.44  E-value=1.2e-12  Score=106.49  Aligned_cols=121  Identities=25%  Similarity=0.235  Sum_probs=89.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--------
Q 036363           17 NGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--------   88 (240)
Q Consensus        17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--------   88 (240)
                      .....|+++|-+++|||||+|+|++...+....  ...|-........+.++..+.+.||-||.+.....--        
T Consensus       190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~--LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFksTLE  267 (411)
T COG2262         190 SGIPLVALVGYTNAGKSTLFNALTGADVYVADQ--LFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAFKSTLE  267 (411)
T ss_pred             cCCCeEEEEeeccccHHHHHHHHhccCeecccc--ccccccCceeEEEeCCCceEEEecCccCcccCChHHHHHHHHHHH
Confidence            345799999999999999999999887654433  3445444445556645789999999999987655432        


Q ss_pred             --CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCC
Q 036363           89 --DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEAN  140 (240)
Q Consensus        89 --~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~  140 (240)
                        ..+|.++.|+|++++...........+...++... .|+++|+||.|.+.+.
T Consensus       268 E~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~-~p~i~v~NKiD~~~~~  320 (411)
T COG2262         268 EVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADE-IPIILVLNKIDLLEDE  320 (411)
T ss_pred             HhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCC-CCEEEEEecccccCch
Confidence              89999999999997744444555555555555333 7899999999987654

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.44  E-value=5e-13  Score=116.61  Aligned_cols=112  Identities=20%  Similarity=0.275  Sum_probs=76.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEe-----------------CCcEEEEEeCCCCCCC
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLK-----------------DGQVVNVIDTPGLFDF   82 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-----------------~~~~~~l~DtpG~~~~   82 (240)
                      ..|+++|+.++|||||+|+|++.......  ..+.|.........+.                 ....+.+|||||+..+
T Consensus         5 piV~IiG~~d~GKTSLln~l~~~~v~~~e--~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f   82 (590)
T TIGR00491         5 PIVSVLGHVDHGKTTLLDKIRGSAVAKRE--AGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAF   82 (590)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccccccc--CCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhH
Confidence            68999999999999999999987643221  1222322111111110                 0123789999999877


Q ss_pred             CCCCcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           83 SAGSEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        83 ~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      ......  ..+|++++|++++++...++...+..+...     ..|+++++||+|...
T Consensus        83 ~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~-----~vpiIVv~NK~Dl~~  135 (590)
T TIGR00491        83 TNLRKRGGALADLAILIVDINEGFKPQTQEALNILRMY-----KTPFVVAANKIDRIP  135 (590)
T ss_pred             HHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHc-----CCCEEEEEECCCccc
Confidence            654443  889999999999977777777666655421     256999999999653

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]

Probab=99.44  E-value=1.4e-13  Score=96.07  Aligned_cols=114  Identities=17%  Similarity=0.196  Sum_probs=84.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAAL   95 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~l   95 (240)
                      .+..|+|.+|+|||+|+-++....+.  +.....+........... ++  ..+.+|||.|...|.+....  +++|+++
T Consensus         9 fkllIigDsgVGKssLl~rF~ddtFs--~sYitTiGvDfkirTv~i-~G~~VkLqIwDtAGqErFrtitstyyrgthgv~   85 (198)
T KOG0079|consen    9 FKLLIIGDSGVGKSSLLLRFADDTFS--GSYITTIGVDFKIRTVDI-NGDRVKLQIWDTAGQERFRTITSTYYRGTHGVI   85 (198)
T ss_pred             HHHHeecCCcccHHHHHHHHhhcccc--cceEEEeeeeEEEEEeec-CCcEEEEEEeecccHHHHHHHHHHHccCCceEE
Confidence            35678999999999999988876542  222233334444444555 33  36789999999998776655  9999999


Q ss_pred             EEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363           96 VVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        96 ~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~  139 (240)
                      +|+|+++.-|... +++|+.+...+..   .|-++|.||.|..+.
T Consensus        86 vVYDVTn~ESF~Nv~rWLeei~~ncds---v~~vLVGNK~d~~~R  127 (198)
T KOG0079|consen   86 VVYDVTNGESFNNVKRWLEEIRNNCDS---VPKVLVGNKNDDPER  127 (198)
T ss_pred             EEEECcchhhhHhHHHHHHHHHhcCcc---ccceecccCCCCccc
Confidence            9999998888776 6788888876653   567999999995543

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.44  E-value=5.3e-13  Score=96.54  Aligned_cols=95  Identities=19%  Similarity=0.216  Sum_probs=62.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCc------CCCceEE
Q 036363           21 TVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSE------FDEIHAA   94 (240)
Q Consensus        21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~------~~~~~~~   94 (240)
                      +|+++|++|+|||||+|++++....      ...|..     ..+ ..   .+|||||.........      ...+|++
T Consensus         2 kv~liG~~~vGKSsL~~~l~~~~~~------~~~t~~-----~~~-~~---~~iDt~G~~~~~~~~~~~~~~~~~~ad~v   66 (142)
T TIGR02528         2 RIMFIGSVGCGKTTLTQALQGEEIL------YKKTQA-----VEY-ND---GAIDTPGEYVENRRLYSALIVTAADADVI   66 (142)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCccc------ccccee-----EEE-cC---eeecCchhhhhhHHHHHHHHHHhhcCCEE
Confidence            7999999999999999999987531      111221     222 22   5899999732111000      1689999


Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           95 LVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        95 l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      ++|+|++++.+.....++.    .++    .|+++|+||+|...
T Consensus        67 ilv~d~~~~~s~~~~~~~~----~~~----~p~ilv~NK~Dl~~  102 (142)
T TIGR02528        67 ALVQSATDPESRFPPGFAS----IFV----KPVIGLVTKIDLAE  102 (142)
T ss_pred             EEEecCCCCCcCCChhHHH----hcc----CCeEEEEEeeccCC
Confidence            9999998776655433222    222    37899999999543

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>PRK13351 elongation factor G; Reviewed

Probab=99.44  E-value=6.9e-13  Score=119.12  Aligned_cols=116  Identities=22%  Similarity=0.296  Sum_probs=85.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCcc---c----cC---------CCCCcceeEEEEEEEEeCCcEEEEEeCCCCCC
Q 036363           18 GVRTVVLVGHTGNGKSATGNSILGRRAFK---S----RA---------SSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFD   81 (240)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~---~----~~---------~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~   81 (240)
                      ..++|+++|+.|+|||||+++|+......   +    +.         ...+.|.........| .+..+++|||||+.+
T Consensus         7 ~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~-~~~~i~liDtPG~~d   85 (687)
T PRK13351          7 QIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDW-DNHRINLIDTPGHID   85 (687)
T ss_pred             cccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEE-CCEEEEEEECCCcHH
Confidence            45899999999999999999997532110   0    00         0134455555666777 888999999999988


Q ss_pred             CCCCCcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363           82 FSAGSEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        82 ~~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~  139 (240)
                      +......  ..+|++++|+|++.+........+..+...     ..|+++++||+|....
T Consensus        86 f~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~-----~~p~iiviNK~D~~~~  140 (687)
T PRK13351         86 FTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRY-----GIPRLIFINKMDRVGA  140 (687)
T ss_pred             HHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhc-----CCCEEEEEECCCCCCC
Confidence            7654333  889999999999987777777777665432     2568899999996654

>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.43  E-value=1e-12  Score=102.81  Aligned_cols=117  Identities=19%  Similarity=0.219  Sum_probs=85.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--------
Q 036363           17 NGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--------   88 (240)
Q Consensus        17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--------   88 (240)
                      .....|++||.+++|||||.|.+.|...+....  ...|+.+....+...+...+.+.||||+.........        
T Consensus        70 ~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~--K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq  147 (379)
T KOG1423|consen   70 QKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSR--KVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQ  147 (379)
T ss_pred             ceEEEEEEEcCCCcchhhhhhHhhCCccccccc--cccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhh
Confidence            345899999999999999999999987755433  3344444444444437778999999999877655443        


Q ss_pred             ------CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363           89 ------DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        89 ------~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~  139 (240)
                            ..+|++++|+|+++.-..-.-..|+.+.....    .|.++|.||.|.+..
T Consensus       148 ~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~----ips~lvmnkid~~k~  200 (379)
T KOG1423|consen  148 NPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSK----IPSILVMNKIDKLKQ  200 (379)
T ss_pred             CHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhc----CCceeeccchhcchh
Confidence                  78999999999985333344556666665432    468999999998754

>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.43  E-value=1.7e-11  Score=102.85  Aligned_cols=115  Identities=18%  Similarity=0.272  Sum_probs=98.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEEEE
Q 036363           19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAALV   96 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~   96 (240)
                      +..|-++|+-..|||||+..|-+.......  ..|+|.....+.+..+.+..+++.||||+..|..++..  ...|.+++
T Consensus       153 pPVVTiMGHVDHGKTTLLD~lRks~VAA~E--~GGITQhIGAF~V~~p~G~~iTFLDTPGHaAF~aMRaRGA~vtDIvVL  230 (683)
T KOG1145|consen  153 PPVVTIMGHVDHGKTTLLDALRKSSVAAGE--AGGITQHIGAFTVTLPSGKSITFLDTPGHAAFSAMRARGANVTDIVVL  230 (683)
T ss_pred             CCeEEEeecccCChhhHHHHHhhCceehhh--cCCccceeceEEEecCCCCEEEEecCCcHHHHHHHHhccCccccEEEE
Confidence            379999999999999999999887764443  36888888888888888899999999999999887766  88999999


Q ss_pred             EEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCC
Q 036363           97 VFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEAN  140 (240)
Q Consensus        97 v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~  140 (240)
                      |+-+.++.-++..+.++..+.     ...|+|+.+||+|+-..+
T Consensus       231 VVAadDGVmpQT~EaIkhAk~-----A~VpiVvAinKiDkp~a~  269 (683)
T KOG1145|consen  231 VVAADDGVMPQTLEAIKHAKS-----ANVPIVVAINKIDKPGAN  269 (683)
T ss_pred             EEEccCCccHhHHHHHHHHHh-----cCCCEEEEEeccCCCCCC
Confidence            999999999998888888853     346899999999976554

>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.43  E-value=6.7e-13  Score=96.39  Aligned_cols=115  Identities=17%  Similarity=0.163  Sum_probs=82.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEe-CCcEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363           19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLK-DGQVVNVIDTPGLFDFSAGSEF--DEIHAAL   95 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l   95 (240)
                      ..+++++|.+|+|||.|+..++...+.+....+.|...  ....+.+. ...++.+|||.|+..|.+....  +++.++|
T Consensus         6 ~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvef--g~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Gal   83 (216)
T KOG0098|consen    6 LFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEF--GARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGAL   83 (216)
T ss_pred             eEEEEEECCCCccHHHHHHHHhccCccccccceeeeee--ceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceE
Confidence            47999999999999999999998876444333333333  22333331 3347899999999998776665  8999999


Q ss_pred             EEEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363           96 VVFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDEL  137 (240)
Q Consensus        96 ~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~  137 (240)
                      +|+|++.+-+.... .+|..++.....  .--++++.||+|+.
T Consensus        84 LVydit~r~sF~hL~~wL~D~rq~~~~--NmvImLiGNKsDL~  124 (216)
T KOG0098|consen   84 LVYDITRRESFNHLTSWLEDARQHSNE--NMVIMLIGNKSDLE  124 (216)
T ss_pred             EEEEccchhhHHHHHHHHHHHHHhcCC--CcEEEEEcchhhhh
Confidence            99999988887764 566666654322  23467789999944

>cd01873 RhoBTB RhoBTB subfamily

Probab=99.43  E-value=3.5e-12  Score=97.13  Aligned_cols=114  Identities=18%  Similarity=0.088  Sum_probs=70.9

Q ss_pred             eEEEEEcCCCCcHHHHHH-HHhCCCCcccc-CCCCCccee--EEEE-E--------EEEeC--CcEEEEEeCCCCCCCCC
Q 036363           20 RTVVLVGHTGNGKSATGN-SILGRRAFKSR-ASSSGVTST--CEMH-R--------TVLKD--GQVVNVIDTPGLFDFSA   84 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin-~l~g~~~~~~~-~~~~~~t~~--~~~~-~--------~~~~~--~~~~~l~DtpG~~~~~~   84 (240)
                      .+|+++|..|+|||||+. .+.+....... ......|..  ..+. .        ... +  ...+.+|||+|......
T Consensus         3 ~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~-~~~~v~l~iwDTaG~~~~~~   81 (195)
T cd01873           3 IKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVV-DGVSVSLRLWDTFGDHDKDR   81 (195)
T ss_pred             eEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceee-CCEEEEEEEEeCCCChhhhh
Confidence            789999999999999995 55543221110 000111110  0000 0        012 2  34678999999975332


Q ss_pred             CCcCCCceEEEEEEECCCCCCHHHHH--HHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363           85 GSEFDEIHAALVVFSVRSRFSQEEEA--TLHSLQTLFGKNCFDYMIVVFSGRDEL  137 (240)
Q Consensus        85 ~~~~~~~~~~l~v~~~~~~~~~~~~~--~l~~l~~~~~~~~~~~~i~v~~~~D~~  137 (240)
                      ....+++|++++|+|++++.+.....  ++..+.....   ..|+++|.||+|..
T Consensus        82 ~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~---~~piilvgNK~DL~  133 (195)
T cd01873          82 RFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCP---RVPVILVGCKLDLR  133 (195)
T ss_pred             cccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCC---CCCEEEEEEchhcc
Confidence            22238999999999999887777653  4555554432   35799999999953

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>cd04103 Centaurin_gamma Centaurin gamma

Probab=99.43  E-value=2.8e-12  Score=94.51  Aligned_cols=107  Identities=21%  Similarity=0.181  Sum_probs=72.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcCCCceEEEEEE
Q 036363           21 TVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEFDEIHAALVVF   98 (240)
Q Consensus        21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~l~v~   98 (240)
                      +|+++|++|+|||||++.++....... ..+.+...   .....+ ++  ..+.+|||+|.....   ....+|++++|+
T Consensus         2 ki~vvG~~gvGKTsli~~~~~~~f~~~-~~~~~~~~---~~~i~~-~~~~~~l~i~D~~g~~~~~---~~~~~~~~ilv~   73 (158)
T cd04103           2 KLGIVGNLQSGKSALVHRYLTGSYVQL-ESPEGGRF---KKEVLV-DGQSHLLLIRDEGGAPDAQ---FASWVDAVIFVF   73 (158)
T ss_pred             EEEEECCCCCcHHHHHHHHHhCCCCCC-CCCCccce---EEEEEE-CCEEEEEEEEECCCCCchh---HHhcCCEEEEEE
Confidence            799999999999999998876543222 21111111   122333 44  357899999996421   126789999999


Q ss_pred             ECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCC
Q 036363           99 SVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDE  136 (240)
Q Consensus        99 ~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~  136 (240)
                      |.+++-+.+. ..++..+...... ...|+++|.||.|.
T Consensus        74 d~~~~~sf~~~~~~~~~i~~~~~~-~~~piilvgnK~Dl  111 (158)
T cd04103          74 SLENEASFQTVYNLYHQLSSYRNI-SEIPLILVGTQDAI  111 (158)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEeeHHHh
Confidence            9998888777 4566666544321 23579999999884

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.43  E-value=9.9e-13  Score=116.95  Aligned_cols=118  Identities=14%  Similarity=0.177  Sum_probs=81.7

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhCCCCccc--------------cC-----------------CCCCcceeEEEEEEE
Q 036363           16 SNGVRTVVLVGHTGNGKSATGNSILGRRAFKS--------------RA-----------------SSSGVTSTCEMHRTV   64 (240)
Q Consensus        16 ~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~--------------~~-----------------~~~~~t~~~~~~~~~   64 (240)
                      ..+..+|+++|+.++|||||++.|+.......              +.                 ...+.|....+....
T Consensus        21 ~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~  100 (632)
T PRK05506         21 RKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFA  100 (632)
T ss_pred             CCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEc
Confidence            34458999999999999999999986532211              10                 012455555555666


Q ss_pred             EeCCcEEEEEeCCCCCCCCCCCcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           65 LKDGQVVNVIDTPGLFDFSAGSEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        65 ~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      + ++..+.++||||+.++......  ..+|++++|+|+..+...+....+..+.. ++   .+++++++||+|...
T Consensus       101 ~-~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~-~~---~~~iivvvNK~D~~~  171 (632)
T PRK05506        101 T-PKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASL-LG---IRHVVLAVNKMDLVD  171 (632)
T ss_pred             c-CCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHH-hC---CCeEEEEEEeccccc
Confidence            6 7788999999998765322212  88999999999987766655555444432 23   267899999999764

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.43  E-value=5.5e-13  Score=117.02  Aligned_cols=114  Identities=25%  Similarity=0.286  Sum_probs=80.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccc------cC-------CCCCcceeEEEEEEEEe--C--CcEEEEEeCCCCCC
Q 036363           19 VRTVVLVGHTGNGKSATGNSILGRRAFKS------RA-------SSSGVTSTCEMHRTVLK--D--GQVVNVIDTPGLFD   81 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~------~~-------~~~~~t~~~~~~~~~~~--~--~~~~~l~DtpG~~~   81 (240)
                      .++|+++|+.++|||||+++|+......+      ..       ...+.|.........|.  +  ...+++|||||+.+
T Consensus         3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d   82 (595)
T TIGR01393         3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD   82 (595)
T ss_pred             eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence            58999999999999999999986432111      00       11355555544444442  1  25789999999999


Q ss_pred             CCCCCcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363           82 FSAGSEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDEL  137 (240)
Q Consensus        82 ~~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~  137 (240)
                      +......  ..+|++++|+|++++.+.++...+..+..   .  ..|+++|+||+|..
T Consensus        83 F~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~---~--~ipiIiViNKiDl~  135 (595)
T TIGR01393        83 FSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE---N--DLEIIPVINKIDLP  135 (595)
T ss_pred             HHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH---c--CCCEEEEEECcCCC
Confidence            8654444  88999999999998777776655544432   1  24689999999954

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=99.42  E-value=8e-13  Score=112.46  Aligned_cols=114  Identities=19%  Similarity=0.244  Sum_probs=81.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccc-----------------------------cCCCCCcceeEEEEEEEEeCC
Q 036363           18 GVRTVVLVGHTGNGKSATGNSILGRRAFKS-----------------------------RASSSGVTSTCEMHRTVLKDG   68 (240)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~-----------------------------~~~~~~~t~~~~~~~~~~~~~   68 (240)
                      +..+|+++|+.++|||||+.+|+.......                             .....+.|.........+ ++
T Consensus         6 ~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~-~~   84 (446)
T PTZ00141          6 THINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET-PK   84 (446)
T ss_pred             ceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEcc-CC
Confidence            348999999999999999998874221100                             011246677777777777 78


Q ss_pred             cEEEEEeCCCCCCCCCCCcC--CCceEEEEEEECCCCC-------CHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCC
Q 036363           69 QVVNVIDTPGLFDFSAGSEF--DEIHAALVVFSVRSRF-------SQEEEATLHSLQTLFGKNCFDYMIVVFSGRDE  136 (240)
Q Consensus        69 ~~~~l~DtpG~~~~~~~~~~--~~~~~~l~v~~~~~~~-------~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~  136 (240)
                      ..++++||||+.+|......  ..+|++++|+|+..+.       ..+..+.+..+. .+|   .+++++++||+|.
T Consensus        85 ~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~-~~g---i~~iiv~vNKmD~  157 (446)
T PTZ00141         85 YYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAF-TLG---VKQMIVCINKMDD  157 (446)
T ss_pred             eEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHH-HcC---CCeEEEEEEcccc
Confidence            89999999999887544333  8999999999998654       245555555543 223   3668899999994

>cd04165 GTPBP1_like GTPBP1-like

Probab=99.41  E-value=1.3e-12  Score=101.38  Aligned_cols=113  Identities=20%  Similarity=0.182  Sum_probs=75.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCccc-cCC-----------CCCccee------------------------EEEEEEE
Q 036363           21 TVVLVGHTGNGKSATGNSILGRRAFKS-RAS-----------SSGVTST------------------------CEMHRTV   64 (240)
Q Consensus        21 ~i~lvG~~g~GKSTlin~l~g~~~~~~-~~~-----------~~~~t~~------------------------~~~~~~~   64 (240)
                      +|+++|+.++|||||++.++......+ +..           ..|.|..                        .....+.
T Consensus         1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~   80 (224)
T cd04165           1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE   80 (224)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence            589999999999999999985332111 000           0111110                        0001122


Q ss_pred             EeCCcEEEEEeCCCCCCCCCCCcC----CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363           65 LKDGQVVNVIDTPGLFDFSAGSEF----DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        65 ~~~~~~~~l~DtpG~~~~~~~~~~----~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~  139 (240)
                      . .+..++++||||+.++......    ..+|++++|+++..+....+...+..+... +    .|+++|+||+|.+..
T Consensus        81 ~-~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~-~----ip~ivvvNK~D~~~~  153 (224)
T cd04165          81 K-SSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALAL-N----IPVFVVVTKIDLAPA  153 (224)
T ss_pred             e-CCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHc-C----CCEEEEEECccccCH
Confidence            2 5678999999999776433222    368999999999888888888888877642 2    458999999997643

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>smart00053 DYNc Dynamin, GTPase

Probab=99.41  E-value=8.1e-12  Score=97.31  Aligned_cols=116  Identities=16%  Similarity=0.165  Sum_probs=71.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCcccc--CCCCCcce-----------------------------------------
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSR--ASSSGVTS-----------------------------------------   56 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~--~~~~~~t~-----------------------------------------   56 (240)
                      ..|++||++|+||||++++|+|...++.+  ..+...+.                                         
T Consensus        27 p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~~~  106 (240)
T smart00053       27 PQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRVTGT  106 (240)
T ss_pred             CeEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHHhcCC
Confidence            58999999999999999999998532222  11100000                                         


Q ss_pred             ------eEEEEEEEEeCCcEEEEEeCCCCCCCCCCCc--C--------------CCceEEEEEEECCCCCCHHH-HHHHH
Q 036363           57 ------TCEMHRTVLKDGQVVNVIDTPGLFDFSAGSE--F--------------DEIHAALVVFSVRSRFSQEE-EATLH  113 (240)
Q Consensus        57 ------~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~--~--------------~~~~~~l~v~~~~~~~~~~~-~~~l~  113 (240)
                            ..-...+..++...++++||||+........  .              ...+.+++|++++..+...+ ....+
T Consensus       107 ~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~  186 (240)
T smart00053      107 NKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAK  186 (240)
T ss_pred             CCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHH
Confidence                  0000001111224789999999975422111  0              34568899999987777665 35544


Q ss_pred             HHHHHhCCCcCCeEEEEEeCCCCCCCC
Q 036363          114 SLQTLFGKNCFDYMIVVFSGRDELEAN  140 (240)
Q Consensus       114 ~l~~~~~~~~~~~~i~v~~~~D~~~~~  140 (240)
                      .+..     ...++++|+||.|.+.+.
T Consensus       187 ~ld~-----~~~rti~ViTK~D~~~~~  208 (240)
T smart00053      187 EVDP-----QGERTIGVITKLDLMDEG  208 (240)
T ss_pred             HHHH-----cCCcEEEEEECCCCCCcc
Confidence            4432     236799999999987653

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.41  E-value=1.1e-12  Score=91.82  Aligned_cols=115  Identities=19%  Similarity=0.217  Sum_probs=85.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAAL   95 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~l   95 (240)
                      .+|++||..|+|||-|++.++...++++.....|....  ...+.+ ++  ..+.+|||.|...|.+....  +.+|+++
T Consensus         8 fkivlvgnagvgktclvrrftqglfppgqgatigvdfm--iktvev-~gekiklqiwdtagqerfrsitqsyyrsahali   84 (213)
T KOG0095|consen    8 FKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFM--IKTVEV-NGEKIKLQIWDTAGQERFRSITQSYYRSAHALI   84 (213)
T ss_pred             EEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEE--EEEEEE-CCeEEEEEEeeccchHHHHHHHHHHhhhcceEE
Confidence            68999999999999999999988776665444444333  334444 43  46789999999999877666  9999999


Q ss_pred             EEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363           96 VVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        96 ~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~  139 (240)
                      +|+|++...+..- -++++.+.+.-..  ..-.|+|.||.|..+.
T Consensus        85 lvydiscqpsfdclpewlreie~yan~--kvlkilvgnk~d~~dr  127 (213)
T KOG0095|consen   85 LVYDISCQPSFDCLPEWLREIEQYANN--KVLKILVGNKIDLADR  127 (213)
T ss_pred             EEEecccCcchhhhHHHHHHHHHHhhc--ceEEEeeccccchhhh
Confidence            9999997777665 4667777665333  2346899999995543

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=99.40  E-value=3e-12  Score=110.42  Aligned_cols=111  Identities=23%  Similarity=0.253  Sum_probs=84.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC----------C
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF----------D   89 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~----------~   89 (240)
                      .+|+++|++++|||||+|+|+|.....+..  .|.|++........ .+..+.++|.||.++.......          .
T Consensus         4 ~~valvGNPNvGKTtlFN~LTG~~q~VgNw--pGvTVEkkeg~~~~-~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~   80 (653)
T COG0370           4 LTVALVGNPNVGKTTLFNALTGANQKVGNW--PGVTVEKKEGKLKY-KGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEG   80 (653)
T ss_pred             ceEEEecCCCccHHHHHHHHhccCceecCC--CCeeEEEEEEEEEe-cCceEEEEeCCCcCCCCCCCchHHHHHHHHhcC
Confidence            679999999999999999999988654444  68888888787777 8888999999999988766544          8


Q ss_pred             CceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCC
Q 036363           90 EIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEAN  140 (240)
Q Consensus        90 ~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~  140 (240)
                      .+|+++-|+|++ .+..    .+....+.+.-  ..|+++++|.+|..+..
T Consensus        81 ~~D~ivnVvDAt-nLeR----nLyltlQLlE~--g~p~ilaLNm~D~A~~~  124 (653)
T COG0370          81 KPDLIVNVVDAT-NLER----NLYLTLQLLEL--GIPMILALNMIDEAKKR  124 (653)
T ss_pred             CCCEEEEEcccc-hHHH----HHHHHHHHHHc--CCCeEEEeccHhhHHhc
Confidence            889999999998 3322    22222222221  25699999999976543

>PRK04004 translation initiation factor IF-2; Validated

Probab=99.40  E-value=1.4e-12  Score=114.25  Aligned_cols=111  Identities=20%  Similarity=0.265  Sum_probs=75.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEe----------C-------CcEEEEEeCCCCCCC
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLK----------D-------GQVVNVIDTPGLFDF   82 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~----------~-------~~~~~l~DtpG~~~~   82 (240)
                      ..|+++|+.++|||||+++|.+.......  ..+.|.........+.          .       -..+.+|||||+.+|
T Consensus         7 p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~--~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f   84 (586)
T PRK04004          7 PIVVVLGHVDHGKTTLLDKIRGTAVAAKE--AGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAF   84 (586)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCcccccCC--CCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHH
Confidence            78999999999999999999987542221  1222222211111100          0       012689999999988


Q ss_pred             CCCCcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363           83 SAGSEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDEL  137 (240)
Q Consensus        83 ~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~  137 (240)
                      ......  ..+|++++|+|++++...+....+..+..     ...|+++++||+|..
T Consensus        85 ~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~-----~~vpiIvviNK~D~~  136 (586)
T PRK04004         85 TNLRKRGGALADIAILVVDINEGFQPQTIEAINILKR-----RKTPFVVAANKIDRI  136 (586)
T ss_pred             HHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHH-----cCCCEEEEEECcCCc
Confidence            654443  77999999999997777777777665543     125699999999964

>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.39  E-value=1.8e-11  Score=94.61  Aligned_cols=124  Identities=17%  Similarity=0.201  Sum_probs=82.6

Q ss_pred             ccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeC---CcEEEEEeCCCCCCCCCCC
Q 036363           10 CELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKD---GQVVNVIDTPGLFDFSAGS   86 (240)
Q Consensus        10 ~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~l~DtpG~~~~~~~~   86 (240)
                      ++-++..|-..+|+.||.+|.|||||+.+|.+...-....+..-.++......+.+..   ...++++||.|+.+.....
T Consensus        33 V~ksv~~GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~  112 (406)
T KOG3859|consen   33 VNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKE  112 (406)
T ss_pred             HHHHHhcCceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcc
Confidence            5567778888999999999999999999999876422211111122222222222211   2367899999999876554


Q ss_pred             cC-------------------------------CCceEEEEEEECC-CCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCC
Q 036363           87 EF-------------------------------DEIHAALVVFSVR-SRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGR  134 (240)
Q Consensus        87 ~~-------------------------------~~~~~~l~v~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~  134 (240)
                      ..                               ..+|+++|.+.++ .++..-+.-.++.+..      ..++|.|+.|+
T Consensus       113 ~Syk~iVdyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH~LKslDLvtmk~Lds------kVNIIPvIAKa  186 (406)
T KOG3859|consen  113 DSYKPIVDYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGHSLKSLDLVTMKKLDS------KVNIIPVIAKA  186 (406)
T ss_pred             cccchHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCcchhHHHHHHHHHHhh------hhhhHHHHHHh
Confidence            43                               8899999999988 3444455555555543      25688889999


Q ss_pred             CCCCC
Q 036363          135 DELEA  139 (240)
Q Consensus       135 D~~~~  139 (240)
                      |.+..
T Consensus       187 DtisK  191 (406)
T KOG3859|consen  187 DTISK  191 (406)
T ss_pred             hhhhH
Confidence            96644

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=99.39  E-value=4.1e-12  Score=112.17  Aligned_cols=150  Identities=24%  Similarity=0.332  Sum_probs=109.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCCccc--cCC--------------CCCcceeEEEEEEEEeCC-cEEEEEeCCCC
Q 036363           17 NGVRTVVLVGHTGNGKSATGNSILGRRAFKS--RAS--------------SSGVTSTCEMHRTVLKDG-QVVNVIDTPGL   79 (240)
Q Consensus        17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~--~~~--------------~~~~t~~~~~~~~~~~~~-~~~~l~DtpG~   79 (240)
                      ...++|+++|+..+|||||..+|+-.....+  +..              ..|.|......+..| .+ ..++++||||+
T Consensus         8 ~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~-~~~~~iNlIDTPGH   86 (697)
T COG0480           8 ERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFW-KGDYRINLIDTPGH   86 (697)
T ss_pred             ccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEE-cCceEEEEeCCCCc
Confidence            3459999999999999999999874433221  111              237788888888888 74 99999999999


Q ss_pred             CCCCCCCcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCCc----ccHHHHhcccC-
Q 036363           80 FDFSAGSEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEAND----ETLEDYLGREC-  152 (240)
Q Consensus        80 ~~~~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~~----~~~~~~~~~~~-  152 (240)
                      .||......  +..|++++|+++..+...+....|+.+.+.     ..|.++++||+|.+..+.    ..+.+.+.... 
T Consensus        87 VDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~-----~vp~i~fiNKmDR~~a~~~~~~~~l~~~l~~~~~  161 (697)
T COG0480          87 VDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKY-----GVPRILFVNKMDRLGADFYLVVEQLKERLGANPV  161 (697)
T ss_pred             cccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhc-----CCCeEEEEECccccccChhhhHHHHHHHhCCCce
Confidence            999887766  999999999999999999999999998642     356899999999885532    23333333210 


Q ss_pred             --------CchHHHHHHHhCCcEEEEeC
Q 036363          153 --------PKPLKEILHLFDNRCVLFDN  172 (240)
Q Consensus       153 --------~~~~~~~~~~~~~~~~~~~~  172 (240)
                              ...+.+.+.....+.+.|..
T Consensus       162 ~v~~pIg~~~~f~g~idl~~~~~~~~~~  189 (697)
T COG0480         162 PVQLPIGAEEEFEGVIDLVEMKAVAFGD  189 (697)
T ss_pred             eeeccccCccccCceeEhhhcCeEEEcC
Confidence                    12334445555566666663

>PRK05433 GTP-binding protein LepA; Provisional

Probab=99.38  E-value=1.4e-12  Score=114.70  Aligned_cols=116  Identities=22%  Similarity=0.274  Sum_probs=80.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCcccc-------------CCCCCcceeEEEEEEEEe----CCcEEEEEeCCCCC
Q 036363           18 GVRTVVLVGHTGNGKSATGNSILGRRAFKSR-------------ASSSGVTSTCEMHRTVLK----DGQVVNVIDTPGLF   80 (240)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~-------------~~~~~~t~~~~~~~~~~~----~~~~~~l~DtpG~~   80 (240)
                      ..++|+++|+.++|||||+.+|+........             ....+.|.........|.    .+..+++|||||+.
T Consensus         6 ~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~   85 (600)
T PRK05433          6 NIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHV   85 (600)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcH
Confidence            4589999999999999999999754221100             012345555444444441    14678999999999


Q ss_pred             CCCCCCcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           81 DFSAGSEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        81 ~~~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      ++......  ..+|++++|+|++++....+...+..+..   .  ..|+++|+||+|...
T Consensus        86 dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~---~--~lpiIvViNKiDl~~  140 (600)
T PRK05433         86 DFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE---N--DLEIIPVLNKIDLPA  140 (600)
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH---C--CCCEEEEEECCCCCc
Confidence            98654444  88999999999997777776655555432   1  246899999999543

>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=99.38  E-value=5.6e-12  Score=89.71  Aligned_cols=144  Identities=17%  Similarity=0.182  Sum_probs=100.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEEEE
Q 036363           19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAALV   96 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~   96 (240)
                      ..+|.++|..||||||+++.+++...     ....+|...+..+..+ ++..+++||..|.-.....+.+  ...|+++|
T Consensus        16 E~riLiLGLdNsGKTti~~kl~~~~~-----~~i~pt~gf~Iktl~~-~~~~L~iwDvGGq~~lr~~W~nYfestdglIw   89 (185)
T KOG0073|consen   16 EVRILILGLDNSGKTTIVKKLLGEDT-----DTISPTLGFQIKTLEY-KGYTLNIWDVGGQKTLRSYWKNYFESTDGLIW   89 (185)
T ss_pred             eeEEEEEecCCCCchhHHHHhcCCCc-----cccCCccceeeEEEEe-cceEEEEEEcCCcchhHHHHHHhhhccCeEEE
Confidence            48999999999999999999999763     2244566677777777 8999999999999888877777  89999999


Q ss_pred             EEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCCcccHHHHhcccCCchHHHHHHHhCCcEEEEeCCC
Q 036363           97 VFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELEANDETLEDYLGRECPKPLKEILHLFDNRCVLFDNKT  174 (240)
Q Consensus        97 v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (240)
                      |+|..++...++ ...+..+... ..-...+++++.||.|.-..-  ..++....   ..+..+...+.++....+.-.
T Consensus        90 vvDssD~~r~~e~~~~L~~lL~e-erlaG~~~Lvlank~dl~~~l--~~~~i~~~---~~L~~l~ks~~~~l~~cs~~t  162 (185)
T KOG0073|consen   90 VVDSSDRMRMQECKQELTELLVE-ERLAGAPLLVLANKQDLPGAL--SLEEISKA---LDLEELAKSHHWRLVKCSAVT  162 (185)
T ss_pred             EEECchHHHHHHHHHHHHHHHhh-hhhcCCceEEEEecCcCcccc--CHHHHHHh---hCHHHhccccCceEEEEeccc
Confidence            999987777665 4444444321 012235799999999943221  22222111   123555566667766666543

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=99.37  E-value=1.5e-12  Score=118.81  Aligned_cols=118  Identities=19%  Similarity=0.276  Sum_probs=86.0

Q ss_pred             CCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC--------------CCCCcceeEEEEEEEEe--------------
Q 036363           15 PSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA--------------SSSGVTSTCEMHRTVLK--------------   66 (240)
Q Consensus        15 ~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~--------------~~~~~t~~~~~~~~~~~--------------   66 (240)
                      .+...++|+++|+.++|||||+.+|+.........              ...+.|.........|.              
T Consensus        15 ~~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~   94 (843)
T PLN00116         15 KKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERD   94 (843)
T ss_pred             CccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccC
Confidence            45567899999999999999999998554321110              01233444333344441              


Q ss_pred             -CCcEEEEEeCCCCCCCCCCCcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363           67 -DGQVVNVIDTPGLFDFSAGSEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDEL  137 (240)
Q Consensus        67 -~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~  137 (240)
                       .+..++++||||+.+|......  ..+|++++|+|+..+........|+.+...     ..|+++++||+|..
T Consensus        95 ~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~-----~~p~i~~iNK~D~~  163 (843)
T PLN00116         95 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGE-----RIRPVLTVNKMDRC  163 (843)
T ss_pred             CCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHHC-----CCCEEEEEECCccc
Confidence             1567899999999998766544  889999999999988888888888877532     25689999999976

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=99.37  E-value=5.2e-12  Score=106.69  Aligned_cols=118  Identities=17%  Similarity=0.229  Sum_probs=74.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccc-cCCCCCcceeEEEEEEE--------------E-----------eCCcEE
Q 036363           18 GVRTVVLVGHTGNGKSATGNSILGRRAFKS-RASSSGVTSTCEMHRTV--------------L-----------KDGQVV   71 (240)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~-~~~~~~~t~~~~~~~~~--------------~-----------~~~~~~   71 (240)
                      +..+|+++|+.++|||||++.|++...... .....+.|....+....              .           ..+..+
T Consensus         3 ~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   82 (406)
T TIGR03680         3 PEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRV   82 (406)
T ss_pred             ceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEE
Confidence            348999999999999999999987532110 01112223322211110              0           013578


Q ss_pred             EEEeCCCCCCCCCCCcC--CCceEEEEEEECCCCC-CHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363           72 NVIDTPGLFDFSAGSEF--DEIHAALVVFSVRSRF-SQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        72 ~l~DtpG~~~~~~~~~~--~~~~~~l~v~~~~~~~-~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~  139 (240)
                      .+|||||+.++......  ..+|++++|+|++.+. ..+....+..+ ..++   .+++++++||+|....
T Consensus        83 ~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l-~~~g---i~~iIVvvNK~Dl~~~  149 (406)
T TIGR03680        83 SFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMAL-EIIG---IKNIVIVQNKIDLVSK  149 (406)
T ss_pred             EEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHH-HHcC---CCeEEEEEEccccCCH
Confidence            99999999877543322  7789999999999655 44555555544 3333   2578999999996643

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=99.36  E-value=3.6e-12  Score=107.61  Aligned_cols=118  Identities=18%  Similarity=0.256  Sum_probs=75.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCcc-ccCCCCCcceeEEEEEEEE--------------e-----------CCcEE
Q 036363           18 GVRTVVLVGHTGNGKSATGNSILGRRAFK-SRASSSGVTSTCEMHRTVL--------------K-----------DGQVV   71 (240)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~-~~~~~~~~t~~~~~~~~~~--------------~-----------~~~~~   71 (240)
                      +..+|+++|+.|+|||||+.+|++..... ......+.|....+....+              .           ....+
T Consensus         8 ~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   87 (411)
T PRK04000          8 PEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRRV   87 (411)
T ss_pred             CcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccEE
Confidence            44899999999999999999997742111 1111233444433211111              0           02578


Q ss_pred             EEEeCCCCCCCCCCCcC--CCceEEEEEEECCCCC-CHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363           72 NVIDTPGLFDFSAGSEF--DEIHAALVVFSVRSRF-SQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        72 ~l~DtpG~~~~~~~~~~--~~~~~~l~v~~~~~~~-~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~  139 (240)
                      .+|||||+.++......  ..+|++++|+|++.+. .......+..+. .++   .+++++|+||+|....
T Consensus        88 ~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~-~~~---i~~iiVVlNK~Dl~~~  154 (411)
T PRK04000         88 SFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALD-IIG---IKNIVIVQNKIDLVSK  154 (411)
T ss_pred             EEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHH-HcC---CCcEEEEEEeeccccc
Confidence            99999998776432222  6679999999999665 555555555443 222   2568999999997653

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=99.36  E-value=3.9e-12  Score=90.42  Aligned_cols=95  Identities=21%  Similarity=0.249  Sum_probs=62.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC------CCceE
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF------DEIHA   93 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~------~~~~~   93 (240)
                      .+|+|||++|||||||+++|.|....      ..-|....     + .+   .++||||-+-.......      ..+|.
T Consensus         2 krimliG~~g~GKTTL~q~L~~~~~~------~~KTq~i~-----~-~~---~~IDTPGEyiE~~~~y~aLi~ta~dad~   66 (143)
T PF10662_consen    2 KRIMLIGPSGSGKTTLAQALNGEEIR------YKKTQAIE-----Y-YD---NTIDTPGEYIENPRFYHALIVTAQDADV   66 (143)
T ss_pred             ceEEEECCCCCCHHHHHHHHcCCCCC------cCccceeE-----e-cc---cEEECChhheeCHHHHHHHHHHHhhCCE
Confidence            68999999999999999999986531      11122222     1 11   26999996644332222      88999


Q ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363           94 ALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDEL  137 (240)
Q Consensus        94 ~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~  137 (240)
                      +++|.|++.+.+.---.+    ...|    .+|+|-|+||+|..
T Consensus        67 V~ll~dat~~~~~~pP~f----a~~f----~~pvIGVITK~Dl~  102 (143)
T PF10662_consen   67 VLLLQDATEPRSVFPPGF----ASMF----NKPVIGVITKIDLP  102 (143)
T ss_pred             EEEEecCCCCCccCCchh----hccc----CCCEEEEEECccCc
Confidence            999999985433221112    1222    36799999999955

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]

Probab=99.35  E-value=1.5e-11  Score=103.08  Aligned_cols=146  Identities=21%  Similarity=0.270  Sum_probs=106.0

Q ss_pred             CCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC-------------CCCCcceeEEEEEEEEeCC---cEEEEEeCCC
Q 036363           15 PSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA-------------SSSGVTSTCEMHRTVLKDG---QVVNVIDTPG   78 (240)
Q Consensus        15 ~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~-------------~~~~~t~~~~~~~~~~~~~---~~~~l~DtpG   78 (240)
                      |.++.+++++|.+-..|||||..+|+....+....             ...|+|...+..+..| .+   ..++++||||
T Consensus        56 P~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify-~~~~~ylLNLIDTPG  134 (650)
T KOG0462|consen   56 PVENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFY-KDGQSYLLNLIDTPG  134 (650)
T ss_pred             chhhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEE-EcCCceEEEeecCCC
Confidence            33667999999999999999999987543321110             1247888888777777 54   7889999999


Q ss_pred             CCCCCCCCcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCCcccHHHHhcccCCchH
Q 036363           79 LFDFSAGSEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEANDETLEDYLGRECPKPL  156 (240)
Q Consensus        79 ~~~~~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~~~~~~~~~~~~~~~~~  156 (240)
                      +.||..+...  ..++++|+|+|+..+.-.+....+....+.     .-.+|.|+||+|.-..+   .+.....     +
T Consensus       135 HvDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~-----~L~iIpVlNKIDlp~ad---pe~V~~q-----~  201 (650)
T KOG0462|consen  135 HVDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEA-----GLAIIPVLNKIDLPSAD---PERVENQ-----L  201 (650)
T ss_pred             cccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHc-----CCeEEEeeeccCCCCCC---HHHHHHH-----H
Confidence            9999887766  889999999999988888876666555432     13489999999954443   3333323     5


Q ss_pred             HHHHHHhCCcEEEEeCCC
Q 036363          157 KEILHLFDNRCVLFDNKT  174 (240)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~  174 (240)
                      ..++..++......+.+.
T Consensus       202 ~~lF~~~~~~~i~vSAK~  219 (650)
T KOG0462|consen  202 FELFDIPPAEVIYVSAKT  219 (650)
T ss_pred             HHHhcCCccceEEEEecc
Confidence            667777777777666553

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.35  E-value=5.8e-12  Score=97.79  Aligned_cols=115  Identities=20%  Similarity=0.194  Sum_probs=77.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeC--CcEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKD--GQVVNVIDTPGLFDFSAGSEF--DEIHAAL   95 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~--~~~~~~l   95 (240)
                      .+|+++|+.|+|||||++++.+...........+ .....  ......  ...+.+|||+|+..+......  .++++++
T Consensus         6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~-~~~~~--~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l   82 (219)
T COG1100           6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIG-NLDPA--KTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGIL   82 (219)
T ss_pred             EEEEEEcCCCccHHHHHHHHhcCcCcccCCCcee-eeeEE--EEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEE
Confidence            7999999999999999999998876544332211 11111  111112  345789999999998766555  8999999


Q ss_pred             EEEECCCCC-CHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363           96 VVFSVRSRF-SQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        96 ~v~~~~~~~-~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~  139 (240)
                      ++++....- +.+. ..+...+....+  ...++++|.||+|....
T Consensus        83 ~~~d~~~~~~~~~~~~~~~~~l~~~~~--~~~~iilv~nK~Dl~~~  126 (219)
T COG1100          83 IVYDSTLRESSDELTEEWLEELRELAP--DDVPILLVGNKIDLFDE  126 (219)
T ss_pred             EEEecccchhhhHHHHHHHHHHHHhCC--CCceEEEEecccccccc
Confidence            999998522 2232 344445554432  23679999999996654

>PTZ00416 elongation factor 2; Provisional

Probab=99.35  E-value=2.2e-12  Score=117.51  Aligned_cols=117  Identities=21%  Similarity=0.278  Sum_probs=83.8

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC--------------CCCCcceeEEEEEEEEe---------CCcEEE
Q 036363           16 SNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA--------------SSSGVTSTCEMHRTVLK---------DGQVVN   72 (240)
Q Consensus        16 ~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~--------------~~~~~t~~~~~~~~~~~---------~~~~~~   72 (240)
                      ....++|+++|+.++|||||+++|++........              ...+.|.........|.         .+..++
T Consensus        16 ~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~   95 (836)
T PTZ00416         16 PDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLIN   95 (836)
T ss_pred             ccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEE
Confidence            3456899999999999999999998643321110              01233333333334441         156789


Q ss_pred             EEeCCCCCCCCCCCcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363           73 VIDTPGLFDFSAGSEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDEL  137 (240)
Q Consensus        73 l~DtpG~~~~~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~  137 (240)
                      ++||||+.++......  ..+|++++|+++..++..+....++.+...     ..|+++++||+|..
T Consensus        96 liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~-----~~p~iv~iNK~D~~  157 (836)
T PTZ00416         96 LIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQE-----RIRPVLFINKVDRA  157 (836)
T ss_pred             EEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHc-----CCCEEEEEEChhhh
Confidence            9999999987655443  889999999999988888888888777542     25789999999976

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=99.35  E-value=2.8e-11  Score=93.74  Aligned_cols=153  Identities=17%  Similarity=0.160  Sum_probs=85.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC-------CCceE
Q 036363           21 TVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF-------DEIHA   93 (240)
Q Consensus        21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~-------~~~~~   93 (240)
                      +|+++|+.|+||||..+.|.+...+. .....+.|.......+.......+.+||.||...+......       ..+++
T Consensus         1 KiLLmG~~~SGKTSi~~vIF~~~~p~-dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~   79 (232)
T PF04670_consen    1 KILLMGPRRSGKTSIRSVIFHKYSPR-DTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGV   79 (232)
T ss_dssp             EEEEEESTTSSHHHHHHHHHS---GG-GGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESE
T ss_pred             CEEEEcCCCCChhhHHHHHHcCCCch-hccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCE
Confidence            68999999999999999999876443 33345667766666665435568999999999987665311       99999


Q ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHh-CCCcCCeEEEEEeCCCCCCCCcccHHHHhcccCCchHHHHHHHhC-CcEEEEe
Q 036363           94 ALVVFSVRSRFSQEEEATLHSLQTLF-GKNCFDYMIVVFSGRDELEANDETLEDYLGRECPKPLKEILHLFD-NRCVLFD  171 (240)
Q Consensus        94 ~l~v~~~~~~~~~~~~~~l~~l~~~~-~~~~~~~~i~v~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  171 (240)
                      +|||+|+...--..+...+..+.+.. ......++.+++.|+|.+.++  .-.+.... ....+...+...+ ..+..|.
T Consensus        80 LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~--~r~~~~~~-~~~~i~~~~~~~~~~~~~~~~  156 (232)
T PF04670_consen   80 LIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSED--EREEIFRD-IQQRIRDELEDLGIEDITFFL  156 (232)
T ss_dssp             EEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HH--HHHHHHHH-HHHHHHHHHHHTT-TSEEEEE
T ss_pred             EEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHH--HHHHHHHH-HHHHHHHHhhhccccceEEEe
Confidence            99999998333444433333322221 122235688889999977542  22222221 1223444444333 2366666


Q ss_pred             CCCcch
Q 036363          172 NKTKDA  177 (240)
Q Consensus       172 ~~~~~~  177 (240)
                      ..-.+.
T Consensus       157 TSI~D~  162 (232)
T PF04670_consen  157 TSIWDE  162 (232)
T ss_dssp             E-TTST
T ss_pred             ccCcCc
Confidence            554443

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.34  E-value=9e-12  Score=87.05  Aligned_cols=115  Identities=10%  Similarity=0.073  Sum_probs=81.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEE-eCCcEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363           19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVL-KDGQVVNVIDTPGLFDFSAGSEF--DEIHAAL   95 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l   95 (240)
                      ..++.++|.+.+|||||+.+.++....+.-.+..|......  .+.- .....+.+|||.|+....+....  ++++++|
T Consensus        21 mfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvK--Tvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfi   98 (193)
T KOG0093|consen   21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVK--TVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFI   98 (193)
T ss_pred             eeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEe--EeeecccEEEEEEEecccchhhhHHHHHHhhccceEE
Confidence            46899999999999999999999876444444444443332  1111 13347899999999987665544  9999999


Q ss_pred             EEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCC
Q 036363           96 VVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDE  136 (240)
Q Consensus        96 ~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~  136 (240)
                      +++|.++.-+....+-+....+... ....++|+|.||||.
T Consensus        99 LmyDitNeeSf~svqdw~tqIktys-w~naqvilvgnKCDm  138 (193)
T KOG0093|consen   99 LMYDITNEESFNSVQDWITQIKTYS-WDNAQVILVGNKCDM  138 (193)
T ss_pred             EEEecCCHHHHHHHHHHHHHheeee-ccCceEEEEecccCC
Confidence            9999997777766554444433332 234679999999993

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.34  E-value=2.4e-11  Score=106.77  Aligned_cols=103  Identities=20%  Similarity=0.223  Sum_probs=72.0

Q ss_pred             cCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC----------CCceEEE
Q 036363           26 GHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF----------DEIHAAL   95 (240)
Q Consensus        26 G~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~----------~~~~~~l   95 (240)
                      |.+|+|||||+|+++|.... .+ ...+.|.........+ ++..+.+|||||++++......          ..+|+++
T Consensus         1 G~pNvGKSSL~N~Ltg~~~~-v~-n~pG~Tv~~~~~~i~~-~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI   77 (591)
T TIGR00437         1 GNPNVGKSTLFNALTGANQT-VG-NWPGVTVEKKEGKLGF-QGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVV   77 (591)
T ss_pred             CCCCCCHHHHHHHHhCCCCe-ec-CCCCeEEEEEEEEEEE-CCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEE
Confidence            89999999999999998642 22 2345666666556666 7778999999999887654211          5789999


Q ss_pred             EEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           96 VVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        96 ~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      +|+|+++ ... .......+.+     ...|+++|+||+|...
T Consensus        78 ~VvDat~-ler-~l~l~~ql~~-----~~~PiIIVlNK~Dl~~  113 (591)
T TIGR00437        78 NVVDASN-LER-NLYLTLQLLE-----LGIPMILALNLVDEAE  113 (591)
T ss_pred             EEecCCc-chh-hHHHHHHHHh-----cCCCEEEEEehhHHHH
Confidence            9999984 321 2222233322     1367999999999643

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=99.33  E-value=1.8e-12  Score=106.28  Aligned_cols=109  Identities=19%  Similarity=0.173  Sum_probs=64.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCC---cceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC-------
Q 036363           19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSG---VTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF-------   88 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~---~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~-------   88 (240)
                      ..+|||+|.+|+|||||||+|.|...-..+....|   +|.....+  ..+.-..+.+||.||..........       
T Consensus        35 ~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y--~~p~~pnv~lWDlPG~gt~~f~~~~Yl~~~~~  112 (376)
T PF05049_consen   35 PLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPY--PHPKFPNVTLWDLPGIGTPNFPPEEYLKEVKF  112 (376)
T ss_dssp             -EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEE--E-SS-TTEEEEEE--GGGSS--HHHHHHHTTG
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeC--CCCCCCCCeEEeCCCCCCCCCCHHHHHHHccc
Confidence            38999999999999999999988543333333333   23333333  3334457899999998765432222       


Q ss_pred             CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCC
Q 036363           89 DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDE  136 (240)
Q Consensus        89 ~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~  136 (240)
                      ...|.||++.+ . +++..+....+.+...     .+++++|-||+|.
T Consensus       113 ~~yD~fiii~s-~-rf~~ndv~La~~i~~~-----gK~fyfVRTKvD~  153 (376)
T PF05049_consen  113 YRYDFFIIISS-E-RFTENDVQLAKEIQRM-----GKKFYFVRTKVDS  153 (376)
T ss_dssp             GG-SEEEEEES-S-S--HHHHHHHHHHHHT-----T-EEEEEE--HHH
T ss_pred             cccCEEEEEeC-C-CCchhhHHHHHHHHHc-----CCcEEEEEecccc
Confidence            77787666543 3 8999998888888653     3679999999994

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.33  E-value=4.2e-12  Score=109.38  Aligned_cols=60  Identities=18%  Similarity=0.153  Sum_probs=53.7

Q ss_pred             CCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEE
Q 036363            4 SRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVL   65 (240)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~   65 (240)
                      +.++.+++|.+.+|  .+|+|+|+||+|||||++.|+|...+.+|....+.+....|+.+.+
T Consensus       335 ~~l~~~~s~~i~~g--~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~  394 (530)
T COG0488         335 RLLLKDLSFRIDRG--DRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHR  394 (530)
T ss_pred             ceeecCceEEecCC--CEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehh
Confidence            57899999999999  9999999999999999999999887777777778888888888765

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=99.33  E-value=3.1e-12  Score=115.06  Aligned_cols=115  Identities=21%  Similarity=0.311  Sum_probs=78.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCc--------------cccCCCCCcceeEEE----EEEEEeCCcEEEEEeCCCC
Q 036363           18 GVRTVVLVGHTGNGKSATGNSILGRRAF--------------KSRASSSGVTSTCEM----HRTVLKDGQVVNVIDTPGL   79 (240)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~--------------~~~~~~~~~t~~~~~----~~~~~~~~~~~~l~DtpG~   79 (240)
                      ..++|+++|+.|+|||||+++|+.....              .......+.|.....    ....+ .+..+++|||||+
T Consensus        18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~-~~~~i~liDTPG~   96 (720)
T TIGR00490        18 FIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEG-NEYLINLIDTPGH   96 (720)
T ss_pred             cccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecC-CceEEEEEeCCCc
Confidence            4589999999999999999999743111              000011233333222    12344 6778999999999


Q ss_pred             CCCCCCCcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           80 FDFSAGSEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        80 ~~~~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      .++......  ..+|++++|+|+..+........++.+...     ..|.++++||+|...
T Consensus        97 ~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~~-----~~p~ivviNKiD~~~  152 (720)
T TIGR00490        97 VDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKE-----NVKPVLFINKVDRLI  152 (720)
T ss_pred             cccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHHHHHc-----CCCEEEEEEChhccc
Confidence            987643333  899999999999877777777776665421     135679999999764

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]

Probab=99.32  E-value=8.8e-12  Score=103.34  Aligned_cols=121  Identities=20%  Similarity=0.205  Sum_probs=86.1

Q ss_pred             CCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCC-CCCCcC-----
Q 036363           15 PSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDF-SAGSEF-----   88 (240)
Q Consensus        15 ~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~-~~~~~~-----   88 (240)
                      ..|  ..|+|+|++++|||||+|+|+.......+. ..|+|.+.-...+.. ++.++.+.||.|+-.. ....+.     
T Consensus       266 q~g--l~iaIvGrPNvGKSSLlNaL~~~drsIVSp-v~GTTRDaiea~v~~-~G~~v~L~DTAGiRe~~~~~iE~~gI~r  341 (531)
T KOG1191|consen  266 QSG--LQIAIVGRPNVGKSSLLNALSREDRSIVSP-VPGTTRDAIEAQVTV-NGVPVRLSDTAGIREESNDGIEALGIER  341 (531)
T ss_pred             hcC--CeEEEEcCCCCCHHHHHHHHhcCCceEeCC-CCCcchhhheeEeec-CCeEEEEEeccccccccCChhHHHhHHH
Confidence            445  899999999999999999999987644443 356777766666666 9999999999999872 221111     


Q ss_pred             -----CCceEEEEEEECCCCCCHHHHHHHHHHHHH---hC----CCcCCeEEEEEeCCCCCCC
Q 036363           89 -----DEIHAALVVFSVRSRFSQEEEATLHSLQTL---FG----KNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        89 -----~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~---~~----~~~~~~~i~v~~~~D~~~~  139 (240)
                           ..+|++++|+|+....+.++....+.+...   +.    .....+++++.||.|...+
T Consensus       342 A~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~  404 (531)
T KOG1191|consen  342 ARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSK  404 (531)
T ss_pred             HHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCc
Confidence                 899999999999655555554444444332   11    1123678999999996544

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.32  E-value=1.9e-11  Score=102.69  Aligned_cols=121  Identities=19%  Similarity=0.240  Sum_probs=98.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEe--CCcEEEEEeCCCCCCCCCCCcC--CCceEE
Q 036363           19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLK--DGQVVNVIDTPGLFDFSAGSEF--DEIHAA   94 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~l~DtpG~~~~~~~~~~--~~~~~~   94 (240)
                      .+.|.++|+-..|||||+..|-+.......  ..+.|.....+.+.++  +...+.++||||+..|..++..  .-.|.+
T Consensus         5 ~PvVtimGHVDHGKTtLLD~IR~t~Va~~E--aGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIa   82 (509)
T COG0532           5 PPVVTIMGHVDHGKTTLLDKIRKTNVAAGE--AGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIA   82 (509)
T ss_pred             CCEEEEeCcccCCccchhhhHhcCcccccc--CCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEE
Confidence            379999999999999999999887764433  3678888888888774  3368999999999999888776  889999


Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCCcccHHH
Q 036363           95 LVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEANDETLED  146 (240)
Q Consensus        95 l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~~~~~~~  146 (240)
                      ++|+++.+++-++..+.+..++.     ...|+++.+||+|+....+..+..
T Consensus        83 ILVVa~dDGv~pQTiEAI~hak~-----a~vP~iVAiNKiDk~~~np~~v~~  129 (509)
T COG0532          83 ILVVAADDGVMPQTIEAINHAKA-----AGVPIVVAINKIDKPEANPDKVKQ  129 (509)
T ss_pred             EEEEEccCCcchhHHHHHHHHHH-----CCCCEEEEEecccCCCCCHHHHHH
Confidence            99999999999999999888864     236899999999988654333333

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=99.30  E-value=3e-12  Score=94.98  Aligned_cols=115  Identities=17%  Similarity=0.204  Sum_probs=65.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC-----CCceEE
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF-----DEIHAA   94 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~-----~~~~~~   94 (240)
                      ..|+|+||+|+|||+|+..|.......+-.+. ....  . .......+..+.++|+||+.........     ..+-++
T Consensus         4 ~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-e~n~--~-~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~I   79 (181)
T PF09439_consen    4 PTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-ENNI--A-YNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGI   79 (181)
T ss_dssp             -EEEEE-STTSSHHHHHHHHHHSS---B---S-SEEE--E-CCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEE
T ss_pred             ceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-cCCc--e-EEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEE
Confidence            68999999999999999999876433222211 1000  0 0000013457889999999876542211     678999


Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHHhC----CCcCCeEEEEEeCCCCCCC
Q 036363           95 LVVFSVRSRFSQEEEATLHSLQTLFG----KNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        95 l~v~~~~~~~~~~~~~~l~~l~~~~~----~~~~~~~i~v~~~~D~~~~  139 (240)
                      +||+|.. ....+-....+.|...+.    ....+|++++.||.|.+..
T Consensus        80 IfvvDSs-~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A  127 (181)
T PF09439_consen   80 IFVVDSS-TDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTA  127 (181)
T ss_dssp             EEEEETT-THHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT-
T ss_pred             EEEEeCc-cchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcccccc
Confidence            9999987 232222333334333332    2345889999999997654

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=99.30  E-value=5e-11  Score=106.18  Aligned_cols=48  Identities=27%  Similarity=0.270  Sum_probs=42.0

Q ss_pred             CCCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCC
Q 036363            2 GGSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASS   51 (240)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~   51 (240)
                      |++.++++++|.+.+|  .+++|+|+||+|||||+++|+|...+.+|...
T Consensus       323 ~~~~il~~isl~i~~G--e~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~  370 (638)
T PRK10636        323 GDRIILDSIKLNLVPG--SRIGLLGRNGAGKSTLIKLLAGELAPVSGEIG  370 (638)
T ss_pred             CCeeeeccceEEECCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCCeEE
Confidence            3457899999999999  99999999999999999999998876666543

>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=99.30  E-value=2.5e-11  Score=95.62  Aligned_cols=116  Identities=17%  Similarity=0.106  Sum_probs=79.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC---------CC
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF---------DE   90 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~---------~~   90 (240)
                      ..|++||-+++|||||+|+|+...+- .+.. ..+|.......+.+.+...+.|.|.||+.........         ..
T Consensus       197 advGLVG~PNAGKSTLL~als~AKpk-Va~Y-aFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiER  274 (366)
T KOG1489|consen  197 ADVGLVGFPNAGKSTLLNALSRAKPK-VAHY-AFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIER  274 (366)
T ss_pred             cccceecCCCCcHHHHHHHhhccCCc-cccc-ceeeeccccceeeccccceeEeccCccccccccccCcccHHHHHHHHh
Confidence            46899999999999999999987652 2222 3445555555555534445999999999988776655         88


Q ss_pred             ceEEEEEEECCCC---CCHHHHHHHHHHHHHhC-CCcCCeEEEEEeCCCCC
Q 036363           91 IHAALVVFSVRSR---FSQEEEATLHSLQTLFG-KNCFDYMIVVFSGRDEL  137 (240)
Q Consensus        91 ~~~~l~v~~~~~~---~~~~~~~~l~~l~~~~~-~~~~~~~i~v~~~~D~~  137 (240)
                      +..++||+|++..   -..+..+.|..-.+.+. .-...|.++|.||+|..
T Consensus       275 ~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~  325 (366)
T KOG1489|consen  275 CKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLP  325 (366)
T ss_pred             hceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCch
Confidence            9999999999854   22333333333333333 22346799999999943

>KOG0395 consensus Ras-related GTPase [General function prediction only]

Probab=99.30  E-value=1.4e-11  Score=93.48  Aligned_cols=116  Identities=24%  Similarity=0.201  Sum_probs=81.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEEEEE
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAALVV   97 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~v   97 (240)
                      .+|+++|.+|+|||+|...+++..+.....++.. +.......+.- ....+.++||+|...+......  ...|++++|
T Consensus         4 ~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~-~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lV   81 (196)
T KOG0395|consen    4 YKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDG-EVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLV   81 (196)
T ss_pred             eEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECC-EEEEEEEEcCCCcccChHHHHHhhccCcEEEEE
Confidence            7999999999999999999998876544333222 22222222211 2346679999997777766655  888999999


Q ss_pred             EECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           98 FSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        98 ~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      ++++++.|.++. ..+..+.+.-+. ...|+++|.||+|...
T Consensus        82 ysitd~~SF~~~~~l~~~I~r~~~~-~~~PivlVGNK~Dl~~  122 (196)
T KOG0395|consen   82 YSITDRSSFEEAKQLREQILRVKGR-DDVPIILVGNKCDLER  122 (196)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhCc-CCCCEEEEEEcccchh
Confidence            999999888875 444455343333 3368999999999554

>PLN00043 elongation factor 1-alpha; Provisional

Probab=99.29  E-value=2.1e-11  Score=103.87  Aligned_cols=115  Identities=19%  Similarity=0.244  Sum_probs=79.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCcc-----------------------------ccCCCCCcceeEEEEEEEEeCC
Q 036363           18 GVRTVVLVGHTGNGKSATGNSILGRRAFK-----------------------------SRASSSGVTSTCEMHRTVLKDG   68 (240)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~-----------------------------~~~~~~~~t~~~~~~~~~~~~~   68 (240)
                      +..+|+++|+.++|||||+-+|+......                             ......+.|.........+ .+
T Consensus         6 ~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~-~~   84 (447)
T PLN00043          6 VHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFET-TK   84 (447)
T ss_pred             ceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecC-CC
Confidence            44899999999999999998886321100                             0011246677777666766 78


Q ss_pred             cEEEEEeCCCCCCCCCCCcC--CCceEEEEEEECCCC-CC------HHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363           69 QVVNVIDTPGLFDFSAGSEF--DEIHAALVVFSVRSR-FS------QEEEATLHSLQTLFGKNCFDYMIVVFSGRDEL  137 (240)
Q Consensus        69 ~~~~l~DtpG~~~~~~~~~~--~~~~~~l~v~~~~~~-~~------~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~  137 (240)
                      +.++++||||+.+|......  ..+|++++|+++..+ +.      .+.++.+..+. .++   .+++++++||+|..
T Consensus        85 ~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~-~~g---i~~iIV~vNKmD~~  158 (447)
T PLN00043         85 YYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAF-TLG---VKQMICCCNKMDAT  158 (447)
T ss_pred             EEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHH-HcC---CCcEEEEEEcccCC
Confidence            89999999999988654444  899999999999853 21      23334333332 222   35689999999954

>cd01882 BMS1 Bms1

Probab=99.29  E-value=2.2e-11  Score=94.84  Aligned_cols=111  Identities=17%  Similarity=0.156  Sum_probs=72.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcCCCceEEEEE
Q 036363           18 GVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEFDEIHAALVV   97 (240)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~l~v   97 (240)
                      ++..|+++|++|+|||||+|.|++...........+ +.  .  .... .+..+.++||||... ........+|++++|
T Consensus        38 ~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g-~i--~--i~~~-~~~~i~~vDtPg~~~-~~l~~ak~aDvVllv  110 (225)
T cd01882          38 PPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKG-PI--T--VVTG-KKRRLTFIECPNDIN-AMIDIAKVADLVLLL  110 (225)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhcccCccccccc-cE--E--EEec-CCceEEEEeCCchHH-HHHHHHHhcCEEEEE
Confidence            348999999999999999999987632111111111 11  1  1112 567889999998541 000111788999999


Q ss_pred             EECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363           98 FSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        98 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~  139 (240)
                      +|+.......+...+..+...    ..+.+++|+||+|.+.+
T Consensus       111 iDa~~~~~~~~~~i~~~l~~~----g~p~vi~VvnK~D~~~~  148 (225)
T cd01882         111 IDASFGFEMETFEFLNILQVH----GFPRVMGVLTHLDLFKK  148 (225)
T ss_pred             EecCcCCCHHHHHHHHHHHHc----CCCeEEEEEeccccCCc
Confidence            999877877777776666432    22445669999997643

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.28  E-value=4.3e-11  Score=97.61  Aligned_cols=139  Identities=20%  Similarity=0.280  Sum_probs=95.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccc--------------cC---------------CCCCcceeEEEEEEEEeCC
Q 036363           18 GVRTVVLVGHTGNGKSATGNSILGRRAFKS--------------RA---------------SSSGVTSTCEMHRTVLKDG   68 (240)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~--------------~~---------------~~~~~t~~~~~~~~~~~~~   68 (240)
                      +..+++++|+..+|||||+-.|+-......              +.               ...|.|........+. +.
T Consensus         6 ph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet-~k   84 (428)
T COG5256           6 PHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFET-DK   84 (428)
T ss_pred             CceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeec-CC
Confidence            348999999999999999988864322100              00               0136777777777766 67


Q ss_pred             cEEEEEeCCCCCCCCCCCcC--CCceEEEEEEECCCC-------CCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363           69 QVVNVIDTPGLFDFSAGSEF--DEIHAALVVFSVRSR-------FSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        69 ~~~~l~DtpG~~~~~~~~~~--~~~~~~l~v~~~~~~-------~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~  139 (240)
                      ..++++|+||+-+|-.....  .++|+.++|+++..+       ...+.++- ..|...+|   ...+|+++||+|...-
T Consensus        85 ~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH-~~La~tlG---i~~lIVavNKMD~v~w  160 (428)
T COG5256          85 YNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREH-AFLARTLG---IKQLIVAVNKMDLVSW  160 (428)
T ss_pred             ceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHH-HHHHHhcC---CceEEEEEEccccccc
Confidence            78999999998888654444  889999999999854       33333333 23344445   4679999999998876


Q ss_pred             CcccHHHHhcccCCchHHHHHHHhCCc
Q 036363          140 NDETLEDYLGRECPKPLKEILHLFDNR  166 (240)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (240)
                      +...+++....     +..++..++..
T Consensus       161 de~rf~ei~~~-----v~~l~k~~G~~  182 (428)
T COG5256         161 DEERFEEIVSE-----VSKLLKMVGYN  182 (428)
T ss_pred             CHHHHHHHHHH-----HHHHHHHcCCC
Confidence            65566665555     45566666644

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=99.25  E-value=7.5e-11  Score=97.28  Aligned_cols=116  Identities=22%  Similarity=0.398  Sum_probs=90.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCC-ccccC-------------CCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCC
Q 036363           19 VRTVVLVGHTGNGKSATGNSILGRRA-FKSRA-------------SSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSA   84 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g~~~-~~~~~-------------~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~   84 (240)
                      .++|++|.+-..|||||+..|+.+.. |....             ...|+|.-..-..+.| ++..++++||||+.+|..
T Consensus         5 iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~-~~~~INIvDTPGHADFGG   83 (603)
T COG1217           5 IRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNY-NGTRINIVDTPGHADFGG   83 (603)
T ss_pred             cceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeec-CCeEEEEecCCCcCCccc
Confidence            47999999999999999999987643 11111             1236666666666777 899999999999999998


Q ss_pred             CCcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCC
Q 036363           85 GSEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEAN  140 (240)
Q Consensus        85 ~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~  140 (240)
                      ..+.  .-+|++++++|+.++.-++.+-.++...+.    ..+ .|+|+||.|.-...
T Consensus        84 EVERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~----gL~-PIVVvNKiDrp~Ar  136 (603)
T COG1217          84 EVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALAL----GLK-PIVVINKIDRPDAR  136 (603)
T ss_pred             hhhhhhhhcceEEEEEEcccCCCCchhhhHHHHHHc----CCC-cEEEEeCCCCCCCC
Confidence            8777  899999999999988888888777776642    223 58899999976553

>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]

Probab=99.24  E-value=2.4e-11  Score=100.96  Aligned_cols=117  Identities=21%  Similarity=0.239  Sum_probs=85.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC---------
Q 036363           18 GVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF---------   88 (240)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~---------   88 (240)
                      +..++.|+|-+++|||||+|.++....-.. . -..+|...-..+..+ .-..+.++||||+.+......+         
T Consensus       167 ~trTlllcG~PNVGKSSf~~~vtradvevq-p-YaFTTksL~vGH~dy-kYlrwQViDTPGILD~plEdrN~IEmqsITA  243 (620)
T KOG1490|consen  167 NTRTLLVCGYPNVGKSSFNNKVTRADDEVQ-P-YAFTTKLLLVGHLDY-KYLRWQVIDTPGILDRPEEDRNIIEMQIITA  243 (620)
T ss_pred             CcCeEEEecCCCCCcHhhcccccccccccC-C-cccccchhhhhhhhh-heeeeeecCCccccCcchhhhhHHHHHHHHH
Confidence            348999999999999999999886553111 1 122233322233333 4457889999999988766655         


Q ss_pred             --CCceEEEEEEECC--CCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCC
Q 036363           89 --DEIHAALVVFSVR--SRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELEAN  140 (240)
Q Consensus        89 --~~~~~~l~v~~~~--~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~  140 (240)
                        .-..++||++|++  ++.|..+ ...++.++..|..   +++|+|+||+|.+.+.
T Consensus       244 LAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaN---K~~IlvlNK~D~m~~e  297 (620)
T KOG1490|consen  244 LAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFAN---KVTILVLNKIDAMRPE  297 (620)
T ss_pred             HHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcC---CceEEEeecccccCcc
Confidence              6667899999998  5677665 6888899998876   6799999999987654

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=99.24  E-value=1.7e-10  Score=102.87  Aligned_cols=48  Identities=21%  Similarity=0.317  Sum_probs=41.7

Q ss_pred             CCCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCC
Q 036363            2 GGSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASS   51 (240)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~   51 (240)
                      +++.++++++|.+.+|  .+++|+|+||+|||||+++|+|...+.+|...
T Consensus       330 ~~~~il~~vsl~i~~G--e~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~  377 (635)
T PRK11147        330 DGKQLVKDFSAQVQRG--DKIALIGPNGCGKTTLLKLMLGQLQADSGRIH  377 (635)
T ss_pred             CCeEEEcCcEEEEcCC--CEEEEECCCCCcHHHHHHHHhCCCCCCCcEEE
Confidence            3456899999999999  99999999999999999999998766666443

>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.23  E-value=5e-11  Score=83.91  Aligned_cols=115  Identities=18%  Similarity=0.189  Sum_probs=75.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEe-CCcEEEEEeCCCCCCCCCCCcC--CCceEEEE
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLK-DGQVVNVIDTPGLFDFSAGSEF--DEIHAALV   96 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~   96 (240)
                      .+++++|+.|+|||-|+..+.....-....  ....+.....-+.+- +..++.+|||.|...|.+....  +++-+.++
T Consensus        10 fKfl~iG~aGtGKSCLLh~Fie~kfkDdss--HTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAlL   87 (214)
T KOG0086|consen   10 FKFLVIGSAGTGKSCLLHQFIENKFKDDSS--HTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALL   87 (214)
T ss_pred             heeEEeccCCCChhHHHHHHHHhhhccccc--ceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceEE
Confidence            689999999999999999988654322211  211222211112220 2346789999999999887766  99999999


Q ss_pred             EEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363           97 VFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        97 v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~  139 (240)
                      |+|++++-+.+.. .+|..++-+-+.  ..-++++.||.| +.+
T Consensus        88 VYD~TsrdsfnaLtnWL~DaR~lAs~--nIvviL~GnKkD-L~~  128 (214)
T KOG0086|consen   88 VYDITSRDSFNALTNWLTDARTLASP--NIVVILCGNKKD-LDP  128 (214)
T ss_pred             EEeccchhhHHHHHHHHHHHHhhCCC--cEEEEEeCChhh-cCh
Confidence            9999988888764 444444433222  123555689988 443

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=99.23  E-value=1.7e-11  Score=95.29  Aligned_cols=44  Identities=27%  Similarity=0.326  Sum_probs=39.7

Q ss_pred             CccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCC
Q 036363            5 RIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRAS   50 (240)
Q Consensus         5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~   50 (240)
                      .++++++|++++|  ..++|+||||+|||||+++|+|...+..|..
T Consensus        18 ~vl~~i~l~v~~G--~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i   61 (254)
T COG1121          18 PVLEDISLSVEKG--EITALIGPNGAGKSTLLKAILGLLKPSSGEI   61 (254)
T ss_pred             eeeeccEEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCcCCcceE
Confidence            5899999999999  9999999999999999999999776666543

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=99.23  E-value=4.2e-10  Score=92.60  Aligned_cols=116  Identities=17%  Similarity=0.205  Sum_probs=76.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCCccc--------------cCCCCC---cceeEEE---EEEEEeCC----cEEE
Q 036363           17 NGVRTVVLVGHTGNGKSATGNSILGRRAFKS--------------RASSSG---VTSTCEM---HRTVLKDG----QVVN   72 (240)
Q Consensus        17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~--------------~~~~~~---~t~~~~~---~~~~~~~~----~~~~   72 (240)
                      +....|+++|+.++|||||+|++++....+.              -.+..|   .|+...+   ........    .++.
T Consensus        15 ~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vr   94 (492)
T TIGR02836        15 QGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVR   94 (492)
T ss_pred             CCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEE
Confidence            3348999999999999999999999822111              011233   4444444   22333222    5789


Q ss_pred             EEeCCCCCCCCCCCcC--------------------------------CCceEEEEEE-ECC------CCCCHHHHHHHH
Q 036363           73 VIDTPGLFDFSAGSEF--------------------------------DEIHAALVVF-SVR------SRFSQEEEATLH  113 (240)
Q Consensus        73 l~DtpG~~~~~~~~~~--------------------------------~~~~~~l~v~-~~~------~~~~~~~~~~l~  113 (240)
                      ++||+|+.+....-..                                ...+..++|. |.+      ......+.+++.
T Consensus        95 lIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~  174 (492)
T TIGR02836        95 LVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIE  174 (492)
T ss_pred             EEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHH
Confidence            9999999875432211                                3677888887 663      355666778888


Q ss_pred             HHHHHhCCCcCCeEEEEEeCCCCC
Q 036363          114 SLQTLFGKNCFDYMIVVFSGRDEL  137 (240)
Q Consensus       114 ~l~~~~~~~~~~~~i~v~~~~D~~  137 (240)
                      .|++.     ..|+++|+|+.|-.
T Consensus       175 eLk~~-----~kPfiivlN~~dp~  193 (492)
T TIGR02836       175 ELKEL-----NKPFIILLNSTHPY  193 (492)
T ss_pred             HHHhc-----CCCEEEEEECcCCC
Confidence            88543     47899999999943

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]

Probab=99.22  E-value=7.4e-11  Score=83.53  Aligned_cols=110  Identities=19%  Similarity=0.191  Sum_probs=79.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCC---CcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEE
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSS---GVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAA   94 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~---~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~   94 (240)
                      .+|+++|..-+|||||+-..+-..+.....++.   ..+.......    ..-.+.+|||.|...|...-..  ++.+++
T Consensus        14 FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed----~ra~L~IWDTAGQErfHALGPIYYRgSnGa   89 (218)
T KOG0088|consen   14 FKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVED----CRADLHIWDTAGQERFHALGPIYYRGSNGA   89 (218)
T ss_pred             eEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhccccccc----ceeeeeeeeccchHhhhccCceEEeCCCce
Confidence            799999999999999998877554322211110   1111111111    2236789999999998766555  999999


Q ss_pred             EEEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCC
Q 036363           95 LVVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRD  135 (240)
Q Consensus        95 l~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D  135 (240)
                      ++|+|++++-+.+- +.++..++.++|..  ..+++|.||.|
T Consensus        90 lLVyDITDrdSFqKVKnWV~Elr~mlGne--i~l~IVGNKiD  129 (218)
T KOG0088|consen   90 LLVYDITDRDSFQKVKNWVLELRTMLGNE--IELLIVGNKID  129 (218)
T ss_pred             EEEEeccchHHHHHHHHHHHHHHHHhCCe--eEEEEecCccc
Confidence            99999998888775 67788888888865  45889999999

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=99.20  E-value=2.7e-11  Score=97.83  Aligned_cols=45  Identities=18%  Similarity=0.167  Sum_probs=40.5

Q ss_pred             CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      ...++++++|++.+|  ..++|+|+||||||||+++|+|...+.+|.
T Consensus        17 ~~~~l~~vs~~i~~G--ei~gllG~NGAGKTTllk~l~gl~~p~~G~   61 (293)
T COG1131          17 DKTALDGVSFEVEPG--EIFGLLGPNGAGKTTLLKILAGLLKPTSGE   61 (293)
T ss_pred             CCEEEeceeEEEcCC--eEEEEECCCCCCHHHHHHHHhCCcCCCceE
Confidence            468999999999999  999999999999999999999988765543

>PRK07560 elongation factor EF-2; Reviewed

Probab=99.20  E-value=2.8e-11  Score=109.19  Aligned_cols=117  Identities=21%  Similarity=0.324  Sum_probs=80.4

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCC--------------CCCcceeEEEEEEEE--e-CCcEEEEEeCCC
Q 036363           16 SNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRAS--------------SSGVTSTCEMHRTVL--K-DGQVVNVIDTPG   78 (240)
Q Consensus        16 ~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~--------------~~~~t~~~~~~~~~~--~-~~~~~~l~DtpG   78 (240)
                      ....++|+++|+.++|||||+.+|+..........              ..+.|.........|  . .+..++++||||
T Consensus        17 ~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG   96 (731)
T PRK07560         17 PEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPG   96 (731)
T ss_pred             hhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCC
Confidence            34568999999999999999999975432211100              112333333333322  1 356789999999


Q ss_pred             CCCCCCCCcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363           79 LFDFSAGSEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDEL  137 (240)
Q Consensus        79 ~~~~~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~  137 (240)
                      +.++......  ..+|++++|+|+..+...+....+..+... +    .|.++++||+|..
T Consensus        97 ~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~-~----~~~iv~iNK~D~~  152 (731)
T PRK07560         97 HVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALRE-R----VKPVLFINKVDRL  152 (731)
T ss_pred             ccChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHHc-C----CCeEEEEECchhh
Confidence            9997544333  889999999999988888888887775432 1    3468999999965

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=99.17  E-value=1.5e-10  Score=98.45  Aligned_cols=120  Identities=16%  Similarity=0.194  Sum_probs=76.3

Q ss_pred             CCCCceEEEEEcCCCCcHHHHHHHHhCCCCccc-cCCCCCcceeEEEEEEE---------------Ee------------
Q 036363           15 PSNGVRTVVLVGHTGNGKSATGNSILGRRAFKS-RASSSGVTSTCEMHRTV---------------LK------------   66 (240)
Q Consensus        15 ~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~-~~~~~~~t~~~~~~~~~---------------~~------------   66 (240)
                      ......+|+++|+-.+|||||+.+|+|.....- .....|.|....+....               .+            
T Consensus        30 ~~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (460)
T PTZ00327         30 SRQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGC  109 (460)
T ss_pred             cCCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccc
Confidence            344559999999999999999999998654211 11112333222221110               00            


Q ss_pred             -----CCcEEEEEeCCCCCCCCCCCcC--CCceEEEEEEECCCC-CCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           67 -----DGQVVNVIDTPGLFDFSAGSEF--DEIHAALVVFSVRSR-FSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        67 -----~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~v~~~~~~-~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                           ....+.++||||+.++......  ..+|++++|+++..+ ...+..+.+.. ...++-   +++++++||+|...
T Consensus       110 ~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i-~~~lgi---~~iIVvlNKiDlv~  185 (460)
T PTZ00327        110 GHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAA-VEIMKL---KHIIILQNKIDLVK  185 (460)
T ss_pred             cccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHH-HHHcCC---CcEEEEEecccccC
Confidence                 0246889999998776433222  889999999999854 34544444433 333342   67899999999664

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=99.17  E-value=6.8e-11  Score=95.86  Aligned_cols=44  Identities=30%  Similarity=0.285  Sum_probs=40.3

Q ss_pred             ccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCC
Q 036363            6 IDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASS   51 (240)
Q Consensus         6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~   51 (240)
                      +++++++.+..|  ..++|+||||||||||+++|+|...+.+|...
T Consensus        18 ~l~~i~l~i~~G--ef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~   61 (338)
T COG3839          18 VLKDVNLDIEDG--EFVVLLGPSGCGKSTLLRMIAGLEEPTSGEIL   61 (338)
T ss_pred             eeecceEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCceEE
Confidence            789999999999  99999999999999999999999887776543

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.16  E-value=3.8e-11  Score=90.05  Aligned_cols=47  Identities=23%  Similarity=0.336  Sum_probs=42.8

Q ss_pred             CCCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCC
Q 036363            2 GGSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRAS   50 (240)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~   50 (240)
                      |...+++++++++.+|  ..++++||+|||||||+++|.+...+.+|..
T Consensus        13 g~~~VLkgi~l~v~~G--evv~iiGpSGSGKSTlLRclN~LE~~~~G~I   59 (240)
T COG1126          13 GDKEVLKGISLSVEKG--EVVVIIGPSGSGKSTLLRCLNGLEEPDSGSI   59 (240)
T ss_pred             CCeEEecCcceeEcCC--CEEEEECCCCCCHHHHHHHHHCCcCCCCceE
Confidence            5678999999999999  9999999999999999999999988777654

>PRK12740 elongation factor G; Reviewed

Probab=99.16  E-value=1.1e-10  Score=104.92  Aligned_cols=109  Identities=26%  Similarity=0.339  Sum_probs=78.2

Q ss_pred             EcCCCCcHHHHHHHHhCCCCcccc---C-------------CCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC
Q 036363           25 VGHTGNGKSATGNSILGRRAFKSR---A-------------SSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF   88 (240)
Q Consensus        25 vG~~g~GKSTlin~l~g~~~~~~~---~-------------~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~   88 (240)
                      +|+.++|||||+++|+........   .             ...+.|.........| .+..+++|||||+.++......
T Consensus         1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~-~~~~i~liDtPG~~~~~~~~~~   79 (668)
T PRK12740          1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEW-KGHKINLIDTPGHVDFTGEVER   79 (668)
T ss_pred             CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEE-CCEEEEEEECCCcHHHHHHHHH
Confidence            699999999999999644321110   0             0135566666667777 8889999999999875433322


Q ss_pred             --CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363           89 --DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        89 --~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~  139 (240)
                        ..+|++++|+|++.+........+..+...     ..|+++|+||+|....
T Consensus        80 ~l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~-----~~p~iiv~NK~D~~~~  127 (668)
T PRK12740         80 ALRVLDGAVVVVCAVGGVEPQTETVWRQAEKY-----GVPRIIFVNKMDRAGA  127 (668)
T ss_pred             HHHHhCeEEEEEeCCCCcCHHHHHHHHHHHHc-----CCCEEEEEECCCCCCC
Confidence              889999999999977777777666665431     2568899999996643

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=99.15  E-value=7.2e-10  Score=87.82  Aligned_cols=106  Identities=17%  Similarity=0.167  Sum_probs=75.0

Q ss_pred             ccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC-
Q 036363           10 CELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF-   88 (240)
Q Consensus        10 ~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~-   88 (240)
                      ..|.+.....-+++|||++++|||||+|.|++...-....  ..+|.++...-..+ ++-.+.++|+||+....+.... 
T Consensus        54 ~gf~V~KsGda~v~lVGfPsvGKStLL~~LTnt~seva~y--~FTTl~~VPG~l~Y-~ga~IQild~Pgii~gas~g~gr  130 (365)
T COG1163          54 SGFAVKKSGDATVALVGFPSVGKSTLLNKLTNTKSEVADY--PFTTLEPVPGMLEY-KGAQIQLLDLPGIIEGASSGRGR  130 (365)
T ss_pred             CcceEeccCCeEEEEEcCCCccHHHHHHHHhCCCcccccc--CceecccccceEee-cCceEEEEcCcccccCcccCCCC
Confidence            5677777777999999999999999999999976432222  23344444344455 8889999999999876655443 


Q ss_pred             --------CCceEEEEEEECCCCCCHHHHHHHHHHHHHhC
Q 036363           89 --------DEIHAALVVFSVRSRFSQEEEATLHSLQTLFG  120 (240)
Q Consensus        89 --------~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~  120 (240)
                              +.+|.+++|+|+......  ...+..-.+..|
T Consensus       131 G~~vlsv~R~ADlIiiVld~~~~~~~--~~~i~~ELe~~G  168 (365)
T COG1163         131 GRQVLSVARNADLIIIVLDVFEDPHH--RDIIERELEDVG  168 (365)
T ss_pred             cceeeeeeccCCEEEEEEecCCChhH--HHHHHHHHHhcC
Confidence                    999999999999843322  444444444444

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=99.15  E-value=6e-10  Score=88.91  Aligned_cols=117  Identities=20%  Similarity=0.140  Sum_probs=77.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC---------CCc
Q 036363           21 TVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF---------DEI   91 (240)
Q Consensus        21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~---------~~~   91 (240)
                      -|++||-+++|||||++.++...+-.....  .+|.......+....+..+++.|.||+....+.-.-         .++
T Consensus       161 DVGLVG~PNaGKSTlls~vS~AkPKIadYp--FTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt  238 (369)
T COG0536         161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYP--FTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLRHIERT  238 (369)
T ss_pred             ccccccCCCCcHHHHHHHHhhcCCcccCCc--cccccCcccEEEecCCCcEEEecCcccccccccCCCccHHHHHHHHhh
Confidence            478899999999999999998765433332  334333333333335667999999999887665443         788


Q ss_pred             eEEEEEEECCC--CCC-HHHHHHHHHHHHHhC-CCcCCeEEEEEeCCCCCCC
Q 036363           92 HAALVVFSVRS--RFS-QEEEATLHSLQTLFG-KNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        92 ~~~l~v~~~~~--~~~-~~~~~~l~~l~~~~~-~~~~~~~i~v~~~~D~~~~  139 (240)
                      -+++.|+|++.  ..+ .++...+..=++.++ .-..+|.++|+||+|...+
T Consensus       239 ~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~  290 (369)
T COG0536         239 RVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLD  290 (369)
T ss_pred             heeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcC
Confidence            88999999982  122 334333333223332 2334789999999995543

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=99.15  E-value=3.6e-11  Score=93.84  Aligned_cols=46  Identities=30%  Similarity=0.412  Sum_probs=41.7

Q ss_pred             CCCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            2 GGSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      +++.++++++|++++|  ..++|+||||||||||+++|+|...+.+|.
T Consensus        13 ~~~~il~~ls~~i~~G--~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~   58 (258)
T COG1120          13 GGKPILDDLSFSIPKG--EITGILGPNGSGKSTLLKCLAGLLKPKSGE   58 (258)
T ss_pred             CCeeEEecceEEecCC--cEEEEECCCCCCHHHHHHHHhccCCCCCCE
Confidence            5678999999999999  999999999999999999999987766654

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=99.15  E-value=1e-10  Score=87.91  Aligned_cols=44  Identities=27%  Similarity=0.344  Sum_probs=39.0

Q ss_pred             CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 036363            3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSR   48 (240)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~   48 (240)
                      +..++++++|++.+|  ..++|+|+||+|||||+++|+|...+.+|
T Consensus        12 ~~~~l~~i~~~i~~G--~~~~i~G~nGsGKSTLl~~l~G~~~~~~G   55 (178)
T cd03229          12 QKTVLNDVSLNIEAG--EIVALLGPSGSGKSTLLRCIAGLEEPDSG   55 (178)
T ss_pred             CeEEEeeeeEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence            346889999999999  99999999999999999999998765544

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=99.15  E-value=1.3e-10  Score=86.92  Aligned_cols=43  Identities=30%  Similarity=0.276  Sum_probs=38.4

Q ss_pred             CCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 036363            4 SRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSR   48 (240)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~   48 (240)
                      ..++++++|++.+|  ..++|+|+||+|||||++.|+|...+.+|
T Consensus        13 ~~~l~~~~~~i~~G--e~~~i~G~nGsGKStLl~~l~G~~~~~~G   55 (173)
T cd03230          13 KTALDDISLTVEKG--EIYGLLGPNGAGKTTLIKIILGLLKPDSG   55 (173)
T ss_pred             eeeeeeeEEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCCCCe
Confidence            45889999999999  99999999999999999999998765444

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.14  E-value=8.7e-11  Score=90.29  Aligned_cols=46  Identities=28%  Similarity=0.373  Sum_probs=41.6

Q ss_pred             CCCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            2 GGSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      ++..++++++|++.+|  ..|+|+||+|||||||+|.|+|...+.+|.
T Consensus        14 ~~~~vl~~i~L~v~~G--EfvsilGpSGcGKSTLLriiAGL~~p~~G~   59 (248)
T COG1116          14 GGVEVLEDINLSVEKG--EFVAILGPSGCGKSTLLRLIAGLEKPTSGE   59 (248)
T ss_pred             CceEEeccceeEECCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCce
Confidence            4467899999999999  999999999999999999999998877664

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=99.14  E-value=2.5e-09  Score=95.41  Aligned_cols=47  Identities=23%  Similarity=0.213  Sum_probs=41.8

Q ss_pred             CCCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCC
Q 036363            2 GGSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRAS   50 (240)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~   50 (240)
                      |++.++++++|.+.+|  .+++|+|+||||||||+++|+|...+.+|..
T Consensus        12 g~~~~l~~vs~~i~~G--e~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I   58 (638)
T PRK10636         12 GVRVLLDNATATINPG--QKVGLVGKNGCGKSTLLALLKNEISADGGSY   58 (638)
T ss_pred             CCceeecCcEEEECCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCceE
Confidence            5678999999999999  9999999999999999999999876666543

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=99.13  E-value=3.1e-09  Score=94.97  Aligned_cols=46  Identities=28%  Similarity=0.385  Sum_probs=41.1

Q ss_pred             CCCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            2 GGSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      |+..++++++|.+.+|  .+++|+|+||||||||+++|+|...+.+|.
T Consensus        14 ~~~~il~~is~~i~~G--e~v~LvG~NGsGKSTLLriiaG~~~p~~G~   59 (635)
T PRK11147         14 SDAPLLDNAELHIEDN--ERVCLVGRNGAGKSTLMKILNGEVLLDDGR   59 (635)
T ss_pred             CCceeEeCcEEEECCC--CEEEEECCCCCCHHHHHHHHcCCCCCCCeE
Confidence            4567999999999999  999999999999999999999987665554

>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]

Probab=99.12  E-value=1.2e-10  Score=82.94  Aligned_cols=144  Identities=15%  Similarity=0.103  Sum_probs=93.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAAL   95 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~l   95 (240)
                      .++.+||.+-+|||+|++.++....+.-..++.|.......  ++...+  .++.+|||.|...|.+....  ++.-+++
T Consensus         9 frlivigdstvgkssll~~ft~gkfaelsdptvgvdffarl--ie~~pg~riklqlwdtagqerfrsitksyyrnsvgvl   86 (213)
T KOG0091|consen    9 FRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARL--IELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGVL   86 (213)
T ss_pred             EEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHH--HhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccceE
Confidence            78999999999999999999876654333322222211110  111122  36789999999999876655  7788899


Q ss_pred             EEEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCCCCCcccHHHHhcccCCchHHHHHHHhCCcEEEEeCCC
Q 036363           96 VVFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDELEANDETLEDYLGRECPKPLKEILHLFDNRCVLFDNKT  174 (240)
Q Consensus        96 ~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (240)
                      +|+|++++-+.+.. .+++...-..+.....-+.+|.+|+|......-+.         +....+-..++..++.-+.+.
T Consensus        87 lvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~---------EEaEklAa~hgM~FVETSak~  157 (213)
T KOG0091|consen   87 LVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTA---------EEAEKLAASHGMAFVETSAKN  157 (213)
T ss_pred             EEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccH---------HHHHHHHHhcCceEEEecccC
Confidence            99999999998874 55666665555444455677899999543221111         223455566677666555443

>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain

Probab=99.10  E-value=2.1e-09  Score=83.54  Aligned_cols=116  Identities=20%  Similarity=0.114  Sum_probs=75.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCC-CCccccCCCCCcceeEEEEEEEEe--CCcEEEEEeCCCCCCCCCCC-cC-----
Q 036363           18 GVRTVVLVGHTGNGKSATGNSILGR-RAFKSRASSSGVTSTCEMHRTVLK--DGQVVNVIDTPGLFDFSAGS-EF-----   88 (240)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlin~l~g~-~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~l~DtpG~~~~~~~~-~~-----   88 (240)
                      +...|+++|+.++|||||+|.|+|. ..+..+.....+|.........+.  .+..+.++||||+.+..... ..     
T Consensus         6 ~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~~   85 (224)
T cd01851           6 PVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARLF   85 (224)
T ss_pred             CEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHHH
Confidence            4579999999999999999999998 345555544566666555544431  24689999999999876644 22     


Q ss_pred             ----CCceEEEEEEECCCCCCHHHHHHHHHHHHH-----------hCCCcCCeEEEEEeCCC
Q 036363           89 ----DEIHAALVVFSVRSRFSQEEEATLHSLQTL-----------FGKNCFDYMIVVFSGRD  135 (240)
Q Consensus        89 ----~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~-----------~~~~~~~~~i~v~~~~D  135 (240)
                          .-.++++|..+..  ....+...+..+.+.           ......+.++.|+-.++
T Consensus        86 ~l~~llss~~i~n~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~ll~vvRD~~  145 (224)
T cd01851          86 ALATLLSSVLIYNSWET--ILGDDLAALMGLLKTTLEVLGLAGLTEFEKPKPLLLFVVRDFS  145 (224)
T ss_pred             HHHHHHhCEEEEeccCc--ccHHHHHHHHHHHHHHHHhhhhhhhhhcccCCCceEEEEecCc
Confidence                3477788776664  344444444444331           12334466677766555

Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein

>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]

Probab=99.10  E-value=1.9e-10  Score=85.93  Aligned_cols=112  Identities=20%  Similarity=0.126  Sum_probs=80.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCc--EEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQ--VVNVIDTPGLFDFSAGSEF--DEIHAAL   95 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~--~~~~~~l   95 (240)
                      .++++||..++|||.|+-+.+...++....++...+.   ...+...++.  .+.+|||.|..+++..+..  +..|+|+
T Consensus         5 ~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdny---s~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl   81 (198)
T KOG0393|consen    5 IKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNY---SANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFL   81 (198)
T ss_pred             eEEEEECCCCcCceEEEEEeccCcCcccccCeEEccc---eEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEE
Confidence            7899999999999999988876654433322111111   1122331143  4679999999999875544  9999999


Q ss_pred             EEEECCCCCCHHH--HHHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363           96 VVFSVRSRFSQEE--EATLHSLQTLFGKNCFDYMIVVFSGRDEL  137 (240)
Q Consensus        96 ~v~~~~~~~~~~~--~~~l~~l~~~~~~~~~~~~i~v~~~~D~~  137 (240)
                      +++++.++.+.++  .+++..+...++.   .|+|+|.+|.|+-
T Consensus        82 ~cfsv~~p~S~~nv~~kW~pEi~~~cp~---vpiiLVGtk~DLr  122 (198)
T KOG0393|consen   82 LCFSVVSPESFENVKSKWIPEIKHHCPN---VPIILVGTKADLR  122 (198)
T ss_pred             EEEEcCChhhHHHHHhhhhHHHHhhCCC---CCEEEEeehHHhh
Confidence            9999998888775  5777788877644   6799999999944

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=99.10  E-value=1.2e-10  Score=89.00  Aligned_cols=44  Identities=25%  Similarity=0.197  Sum_probs=40.2

Q ss_pred             CCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            4 SRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      ..+++|++|++..|  .+|+|||+||||||||++.|+|...|.+|.
T Consensus        40 ~~aL~disf~i~~G--e~vGiiG~NGaGKSTLlkliaGi~~Pt~G~   83 (249)
T COG1134          40 FWALKDISFEIYKG--ERVGIIGHNGAGKSTLLKLIAGIYKPTSGK   83 (249)
T ss_pred             EEEecCceEEEeCC--CEEEEECCCCCcHHHHHHHHhCccCCCCce
Confidence            45789999999999  999999999999999999999998877654

>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.09  E-value=4.7e-10  Score=81.89  Aligned_cols=116  Identities=14%  Similarity=0.076  Sum_probs=83.0

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceE
Q 036363           16 SNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHA   93 (240)
Q Consensus        16 ~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~   93 (240)
                      .....+|+++|-.+|||||++..+--.....+     ..|.......+.+ .+..+.+||.-|.......+..  ...++
T Consensus        14 ~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-----vPTiGfnVE~v~y-kn~~f~vWDvGGq~k~R~lW~~Y~~~t~~   87 (181)
T KOG0070|consen   14 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-----VPTIGFNVETVEY-KNISFTVWDVGGQEKLRPLWKHYFQNTQG   87 (181)
T ss_pred             CcceEEEEEEeccCCCceeeeEeeccCCcccC-----CCccccceeEEEE-cceEEEEEecCCCcccccchhhhccCCcE
Confidence            34458999999999999999988765544333     2344445555666 7889999999999888887777  99999


Q ss_pred             EEEEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           94 ALVVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        94 ~l~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      +|||+|.+++....+ ++.+..+...- .-...|+++..||.|...
T Consensus        88 lIfVvDS~Dr~Ri~eak~eL~~~l~~~-~l~~~~llv~aNKqD~~~  132 (181)
T KOG0070|consen   88 LIFVVDSSDRERIEEAKEELHRMLAEP-ELRNAPLLVFANKQDLPG  132 (181)
T ss_pred             EEEEEeCCcHHHHHHHHHHHHHHHcCc-ccCCceEEEEechhhccc
Confidence            999999997655544 33443333221 113467888899999443

>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]

Probab=99.09  E-value=1.8e-09  Score=91.53  Aligned_cols=145  Identities=21%  Similarity=0.262  Sum_probs=97.6

Q ss_pred             cccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCcccc-----------------------------CCCCCcceeEEEE
Q 036363           11 ELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSR-----------------------------ASSSGVTSTCEMH   61 (240)
Q Consensus        11 ~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~-----------------------------~~~~~~t~~~~~~   61 (240)
                      +....+.....++++|+..+|||||+..|+-.......                             ....|.|......
T Consensus       169 ~~q~~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~  248 (603)
T KOG0458|consen  169 DEQSDPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTT  248 (603)
T ss_pred             ccccCCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeE
Confidence            33444556689999999999999999988744321110                             0123666666655


Q ss_pred             EEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEEEEEEECC-C----CCCHH-HHHHHHHHHHHhCCCcCCeEEEEEeC
Q 036363           62 RTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAALVVFSVR-S----RFSQE-EEATLHSLQTLFGKNCFDYMIVVFSG  133 (240)
Q Consensus        62 ~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~v~~~~-~----~~~~~-~~~~l~~l~~~~~~~~~~~~i~v~~~  133 (240)
                      .++. ....++++|+||+-+|......  ..+|+.++|+|++ +    ++... ..+....+...+|   ...+++++||
T Consensus       249 ~fes-~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lg---i~qlivaiNK  324 (603)
T KOG0458|consen  249 WFES-KSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLG---ISQLIVAINK  324 (603)
T ss_pred             EEec-CceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcC---cceEEEEeec
Confidence            5655 7778999999999998776555  8899999999987 2    22211 1233344455555   3679999999


Q ss_pred             CCCCCCCcccHHHHhcccCCchHHHHH-HHhC
Q 036363          134 RDELEANDETLEDYLGRECPKPLKEIL-HLFD  164 (240)
Q Consensus       134 ~D~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  164 (240)
                      +|.+.-....+++....     +..++ +.|+
T Consensus       325 mD~V~Wsq~RF~eIk~~-----l~~fL~~~~g  351 (603)
T KOG0458|consen  325 MDLVSWSQDRFEEIKNK-----LSSFLKESCG  351 (603)
T ss_pred             ccccCccHHHHHHHHHH-----HHHHHHHhcC
Confidence            99887765566665555     55555 5555

>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.08  E-value=6.7e-10  Score=93.81  Aligned_cols=129  Identities=19%  Similarity=0.168  Sum_probs=85.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCcc-ccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC-CCceEEE
Q 036363           18 GVRTVVLVGHTGNGKSATGNSILGRRAFK-SRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF-DEIHAAL   95 (240)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~-~~~~~~l   95 (240)
                      ++..++++||+|+||||||++|.....-. -.....++|+...       ..+.++++.+|  .+.....+. .-+|.+|
T Consensus        68 PPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GPiTvvsg-------K~RRiTflEcp--~Dl~~miDvaKIaDLVl  138 (1077)
T COG5192          68 PPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPITVVSG-------KTRRITFLECP--SDLHQMIDVAKIADLVL  138 (1077)
T ss_pred             CCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCceEEeec-------ceeEEEEEeCh--HHHHHHHhHHHhhheeE
Confidence            34888999999999999999997643211 1222233333222       56688999999  332222222 6788899


Q ss_pred             EEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCCcccHHHHhcccCCchHHHHH
Q 036363           96 VVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEANDETLEDYLGRECPKPLKEIL  160 (240)
Q Consensus        96 ~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~  160 (240)
                      ++++.+-++..+...+|..+.    ....|.++-|+||.|.+... ..+....+......|.++.
T Consensus       139 LlIdgnfGfEMETmEFLnil~----~HGmPrvlgV~ThlDlfk~~-stLr~~KKrlkhRfWtEiy  198 (1077)
T COG5192         139 LLIDGNFGFEMETMEFLNILI----SHGMPRVLGVVTHLDLFKNP-STLRSIKKRLKHRFWTEIY  198 (1077)
T ss_pred             EEeccccCceehHHHHHHHHh----hcCCCceEEEEeecccccCh-HHHHHHHHHHhhhHHHHHc
Confidence            999999888888888888776    44568899999999977543 3555544443334444443

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=99.07  E-value=1.5e-10  Score=94.27  Aligned_cols=46  Identities=17%  Similarity=0.183  Sum_probs=40.7

Q ss_pred             CCCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            2 GGSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      |+..++++++|++++|  ..++|+|+||+|||||+++|+|...+.+|.
T Consensus         4 ~~~~~l~~vs~~i~~G--e~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~   49 (302)
T TIGR01188         4 GDFKAVDGVNFKVREG--EVFGFLGPNGAGKTTTIRMLTTLLRPTSGT   49 (302)
T ss_pred             CCeeEEeeeeEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCCCceE
Confidence            4567899999999999  999999999999999999999987665553

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=99.07  E-value=8.4e-11  Score=85.60  Aligned_cols=61  Identities=36%  Similarity=0.477  Sum_probs=36.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCC----CC--cceeEEEEEEEEeCCcEEEEEeCCCCCCCCC
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASS----SG--VTSTCEMHRTVLKDGQVVNVIDTPGLFDFSA   84 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~----~~--~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~   84 (240)
                      ..++|+|++|+|||||+|.|++......+...    .|  +|.....+  .+  .....|+||||+.++..
T Consensus        36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~--~l--~~g~~iIDTPGf~~~~l  102 (161)
T PF03193_consen   36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELF--PL--PDGGYIIDTPGFRSFGL  102 (161)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEE--EE--TTSEEEECSHHHHT--G
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEE--ec--CCCcEEEECCCCCcccc
Confidence            79999999999999999999998544433221    11  22222222  22  23467999999998743

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=99.07  E-value=3e-10  Score=92.56  Aligned_cols=46  Identities=22%  Similarity=0.297  Sum_probs=40.4

Q ss_pred             CCCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            2 GGSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      |+..++++++|++++|  ..++|+|+||||||||+++|+|...+.+|.
T Consensus        18 ~~~~~l~~vsl~i~~G--ei~gllGpNGaGKSTLl~~l~Gl~~p~~G~   63 (306)
T PRK13537         18 GDKLVVDGLSFHVQRG--ECFGLLGPNGAGKTTTLRMLLGLTHPDAGS   63 (306)
T ss_pred             CCeEEEecceEEEeCC--cEEEEECCCCCCHHHHHHHHhcCCCCCceE
Confidence            3456899999999999  899999999999999999999987766553

>cd01900 YchF YchF subfamily

Probab=99.06  E-value=4.5e-10  Score=89.31  Aligned_cols=78  Identities=21%  Similarity=0.145  Sum_probs=55.0

Q ss_pred             EEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC----------------cEEEEEeCCCCCCCCCC
Q 036363           22 VVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG----------------QVVNVIDTPGLFDFSAG   85 (240)
Q Consensus        22 i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~----------------~~~~l~DtpG~~~~~~~   85 (240)
                      |+|||.+++|||||+|+|++.....+..  +++|.........+++.                ..+.++|+||+......
T Consensus         1 igivG~PN~GKSTLfn~Lt~~~~~~~n~--pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~   78 (274)
T cd01900           1 IGIVGLPNVGKSTLFNALTKAGAEAANY--PFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK   78 (274)
T ss_pred             CeEeCCCCCcHHHHHHHHhCCCCccccc--cccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCch
Confidence            5899999999999999999987532222  44554544444444221                14889999999865443


Q ss_pred             CcC---------CCceEEEEEEECC
Q 036363           86 SEF---------DEIHAALVVFSVR  101 (240)
Q Consensus        86 ~~~---------~~~~~~l~v~~~~  101 (240)
                      ...         +.+|++++|+++.
T Consensus        79 ~~glg~~fL~~i~~~D~li~VV~~f  103 (274)
T cd01900          79 GEGLGNKFLSHIREVDAIAHVVRCF  103 (274)
T ss_pred             hhHHHHHHHHHHHhCCEEEEEEeCc
Confidence            222         7899999999874

YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=99.06  E-value=3e-10  Score=84.81  Aligned_cols=42  Identities=29%  Similarity=0.302  Sum_probs=38.4

Q ss_pred             CccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 036363            5 RIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSR   48 (240)
Q Consensus         5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~   48 (240)
                      .++++++|.+++|  ..++|+|+||+|||||++.|+|...+.+|
T Consensus        16 ~~l~~i~~~i~~G--~~~~l~G~nGsGKstLl~~i~G~~~~~~G   57 (171)
T cd03228          16 PVLKDVSLTIKPG--EKVAIVGPSGSGKSTLLKLLLRLYDPTSG   57 (171)
T ss_pred             ccccceEEEEcCC--CEEEEECCCCCCHHHHHHHHHcCCCCCCC
Confidence            6899999999999  99999999999999999999998765554

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=99.06  E-value=6.5e-10  Score=85.22  Aligned_cols=44  Identities=16%  Similarity=0.223  Sum_probs=39.4

Q ss_pred             CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 036363            3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSR   48 (240)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~   48 (240)
                      ++.++++++|++.+|  ..++|+|+||+|||||++.|+|...+.+|
T Consensus        12 ~~~~l~~isl~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~~~G   55 (201)
T cd03231          12 GRALFSGLSFTLAAG--EALQVTGPNGSGKTTLLRILAGLSPPLAG   55 (201)
T ss_pred             CceeeccceEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            456889999999999  99999999999999999999998765554

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=99.06  E-value=3.1e-10  Score=84.89  Aligned_cols=44  Identities=20%  Similarity=0.330  Sum_probs=38.9

Q ss_pred             CCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            4 SRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      ..++++++|.+.+|  ..++|+|+||+|||||++.|+|...+.+|.
T Consensus        15 ~~~l~~~~~~i~~G--e~~~i~G~nGsGKStLl~~l~G~~~~~~G~   58 (173)
T cd03246          15 PPVLRNVSFSIEPG--ESLAIIGPSGSGKSTLARLILGLLRPTSGR   58 (173)
T ss_pred             CcceeeeEEEECCC--CEEEEECCCCCCHHHHHHHHHhccCCCCCe
Confidence            35899999999999  999999999999999999999987655543

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=99.06  E-value=3.1e-10  Score=93.58  Aligned_cols=46  Identities=26%  Similarity=0.365  Sum_probs=40.7

Q ss_pred             CCCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            2 GGSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      |+..++++++|++++|  ..++|+|+||+|||||+++|+|...+.+|.
T Consensus        52 ~~~~~l~~is~~i~~G--ei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~   97 (340)
T PRK13536         52 GDKAVVNGLSFTVASG--ECFGLLGPNGAGKSTIARMILGMTSPDAGK   97 (340)
T ss_pred             CCEEEEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHHcCCCCCceE
Confidence            4456899999999999  999999999999999999999987666553

>cd01858 NGP_1 NGP-1

Probab=99.06  E-value=4.8e-10  Score=82.51  Aligned_cols=56  Identities=23%  Similarity=0.300  Sum_probs=40.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCC
Q 036363           19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGL   79 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~   79 (240)
                      ..+|+++|.+|+|||||+|+|++......+.. .+.|.......    .+..++++||||+
T Consensus       102 ~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~-~g~T~~~~~~~----~~~~~~liDtPGi  157 (157)
T cd01858         102 QISVGFIGYPNVGKSSIINTLRSKKVCKVAPI-PGETKVWQYIT----LMKRIYLIDCPGV  157 (157)
T ss_pred             ceEEEEEeCCCCChHHHHHHHhcCCceeeCCC-CCeeEeEEEEE----cCCCEEEEECcCC
Confidence            37899999999999999999999766554443 34454433222    2345889999995

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=99.05  E-value=7.4e-10  Score=82.25  Aligned_cols=44  Identities=18%  Similarity=0.279  Sum_probs=39.2

Q ss_pred             CCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            4 SRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      +.++++++|.+.+|  ..++|+|+||+|||||++.|+|...+.+|.
T Consensus        14 ~~~l~~i~l~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~   57 (166)
T cd03223          14 RVLLKDLSFEIKPG--DRLLITGPSGTGKSSLFRALAGLWPWGSGR   57 (166)
T ss_pred             CeeeecCeEEECCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCce
Confidence            46889999999999  999999999999999999999987655543

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>PTZ00258 GTP-binding protein; Provisional

Probab=99.05  E-value=8.9e-10  Score=91.48  Aligned_cols=82  Identities=18%  Similarity=0.129  Sum_probs=58.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeC----------------CcEEEEEeCCCCCC
Q 036363           18 GVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKD----------------GQVVNVIDTPGLFD   81 (240)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~----------------~~~~~l~DtpG~~~   81 (240)
                      ...+|+|||.+++|||||+|+|++.....+..  +++|.......+.+++                ...+.++||||+..
T Consensus        20 ~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~--pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~   97 (390)
T PTZ00258         20 NNLKMGIVGLPNVGKSTTFNALCKQQVPAENF--PFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVK   97 (390)
T ss_pred             CCcEEEEECCCCCChHHHHHHHhcCcccccCC--CCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCc
Confidence            34799999999999999999998876432222  4556555555554421                12488999999986


Q ss_pred             CCCCCcC---------CCceEEEEEEECC
Q 036363           82 FSAGSEF---------DEIHAALVVFSVR  101 (240)
Q Consensus        82 ~~~~~~~---------~~~~~~l~v~~~~  101 (240)
                      .......         +.+|++++|+++.
T Consensus        98 ga~~g~gLg~~fL~~Ir~aD~il~VVd~f  126 (390)
T PTZ00258         98 GASEGEGLGNAFLSHIRAVDGIYHVVRAF  126 (390)
T ss_pred             CCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence            5443222         8899999999984

>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]

Probab=99.05  E-value=1.6e-09  Score=75.48  Aligned_cols=122  Identities=16%  Similarity=0.086  Sum_probs=81.1

Q ss_pred             ccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--C
Q 036363           12 LTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--D   89 (240)
Q Consensus        12 ~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~   89 (240)
                      +..++++..+|+++|-.++|||||++.|.+..+..--     .|.........+.+...+++||..|.-....-+.+  .
T Consensus        10 ~ks~t~rEirilllGldnAGKTT~LKqL~sED~~hlt-----pT~GFn~k~v~~~g~f~LnvwDiGGqr~IRpyWsNYye   84 (185)
T KOG0074|consen   10 CKSRTRREIRILLLGLDNAGKTTFLKQLKSEDPRHLT-----PTNGFNTKKVEYDGTFHLNVWDIGGQRGIRPYWSNYYE   84 (185)
T ss_pred             hcCCCcceEEEEEEecCCCcchhHHHHHccCChhhcc-----ccCCcceEEEeecCcEEEEEEecCCccccchhhhhhhh
Confidence            4455677799999999999999999999988753221     12222333344424568999999999888887777  8


Q ss_pred             CceEEEEEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363           90 EIHAALVVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        90 ~~~~~l~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~  139 (240)
                      .+|++|||+|.++.-..++ ...+-.+.+.- +-...|+.+..|+-|.+..
T Consensus        85 nvd~lIyVIDS~D~krfeE~~~el~ELleee-Kl~~vpvlIfankQdllta  134 (185)
T KOG0074|consen   85 NVDGLIYVIDSTDEKRFEEISEELVELLEEE-KLAEVPVLIFANKQDLLTA  134 (185)
T ss_pred             ccceEEEEEeCCchHhHHHHHHHHHHHhhhh-hhhccceeehhhhhHHHhh
Confidence            9999999999775433332 12222222211 1123567777888886644

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.04  E-value=5.5e-10  Score=85.17  Aligned_cols=47  Identities=28%  Similarity=0.370  Sum_probs=43.4

Q ss_pred             CCCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCC
Q 036363            2 GGSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRAS   50 (240)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~   50 (240)
                      |++.++++++|++++|  ...+++|++|+|||||++.|+|...+..|..
T Consensus        19 G~~~Ild~v~l~V~~G--ei~~iiGgSGsGKStlLr~I~Gll~P~~GeI   65 (263)
T COG1127          19 GDRVILDGVDLDVPRG--EILAILGGSGSGKSTLLRLILGLLRPDKGEI   65 (263)
T ss_pred             CCEEEecCceeeecCC--cEEEEECCCCcCHHHHHHHHhccCCCCCCeE
Confidence            6788999999999999  9999999999999999999999988877654

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=99.04  E-value=4.4e-10  Score=88.09  Aligned_cols=45  Identities=24%  Similarity=0.285  Sum_probs=39.7

Q ss_pred             CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      ++.++++++|.+.+|  ..++|+|+||+|||||++.|+|...+.+|.
T Consensus        12 ~~~~l~~vs~~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~   56 (232)
T cd03218          12 KRKVVNGVSLSVKQG--EIVGLLGPNGAGKTTTFYMIVGLVKPDSGK   56 (232)
T ss_pred             CEEeeccceeEecCC--cEEEEECCCCCCHHHHHHHHhCCCCCCCcE
Confidence            456899999999999  999999999999999999999987665543

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=99.04  E-value=6e-10  Score=86.18  Aligned_cols=45  Identities=29%  Similarity=0.299  Sum_probs=39.7

Q ss_pred             CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      ++.++++++|++.+|  ..++|+|+||+|||||+++|+|...+.+|.
T Consensus        12 ~~~il~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~p~~G~   56 (213)
T cd03259          12 SVRALDDLSLTVEPG--EFLALLGPSGCGKTTLLRLIAGLERPDSGE   56 (213)
T ss_pred             CeeeecceeEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCCCCeE
Confidence            356899999999999  999999999999999999999987655543

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.04  E-value=3.6e-10  Score=86.59  Aligned_cols=43  Identities=28%  Similarity=0.276  Sum_probs=39.4

Q ss_pred             CccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            5 RIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      .++++++|.+++|  ..|+|+||+|||||||+|.|.|...+.++.
T Consensus        19 ~~L~~v~l~i~~G--e~vaI~GpSGSGKSTLLniig~ld~pt~G~   61 (226)
T COG1136          19 EALKDVNLEIEAG--EFVAIVGPSGSGKSTLLNLLGGLDKPTSGE   61 (226)
T ss_pred             EecccceEEEcCC--CEEEEECCCCCCHHHHHHHHhcccCCCCce
Confidence            5889999999999  999999999999999999999988776654

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=99.03  E-value=6.4e-10  Score=94.68  Aligned_cols=46  Identities=33%  Similarity=0.329  Sum_probs=41.3

Q ss_pred             CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCC
Q 036363            3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRAS   50 (240)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~   50 (240)
                      |++++.+++|++++|  ..+++||++|+|||||++.|+|...+..|..
T Consensus       333 g~~~l~~l~~t~~~g--~~talvG~SGaGKSTLl~lL~G~~~~~~G~I  378 (559)
T COG4988         333 GKPALSDLNLTIKAG--QLTALVGASGAGKSTLLNLLLGFLAPTQGEI  378 (559)
T ss_pred             CCcccCCceeEecCC--cEEEEECCCCCCHHHHHHHHhCcCCCCCceE
Confidence            458899999999999  9999999999999999999999887666554

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.03  E-value=1.3e-10  Score=83.87  Aligned_cols=46  Identities=20%  Similarity=0.276  Sum_probs=41.0

Q ss_pred             CCCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            2 GGSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      ++..++++++|.+.+|  ..|++.||+|||||||++.++....+.+|.
T Consensus        14 ~~a~il~~isl~v~~G--e~iaitGPSG~GKStllk~va~Lisp~~G~   59 (223)
T COG4619          14 GDAKILNNISLSVRAG--EFIAITGPSGCGKSTLLKIVASLISPTSGT   59 (223)
T ss_pred             CCCeeecceeeeecCC--ceEEEeCCCCccHHHHHHHHHhccCCCCce
Confidence            4567899999999999  999999999999999999999887766654

>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]

Probab=99.03  E-value=2.3e-10  Score=80.09  Aligned_cols=114  Identities=18%  Similarity=0.095  Sum_probs=79.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEEEEE
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAALVV   97 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~v   97 (240)
                      ..+.++|--.+|||||.|.++..... ..   .+.|+......+.- +...+.+||.||...|...++.  +++++++|+
T Consensus        21 mel~lvGLq~sGKtt~Vn~ia~g~~~-ed---miptvGfnmrk~tk-gnvtiklwD~gGq~rfrsmWerycR~v~aivY~   95 (186)
T KOG0075|consen   21 MELSLVGLQNSGKTTLVNVIARGQYL-ED---MIPTVGFNMRKVTK-GNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYV   95 (186)
T ss_pred             eeEEEEeeccCCcceEEEEEeeccch-hh---hcccccceeEEecc-CceEEEEEecCCCccHHHHHHHHhhcCcEEEEE
Confidence            68899999999999999988754332 22   22344444444444 5668899999999999998887  999999999


Q ss_pred             EECCCCCC-HHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363           98 FSVRSRFS-QEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        98 ~~~~~~~~-~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~  139 (240)
                      +|+.++-. ...+..++.+...- .-...|++++.||.|.-..
T Consensus        96 VDaad~~k~~~sr~EL~~LL~k~-~l~gip~LVLGnK~d~~~A  137 (186)
T KOG0075|consen   96 VDAADPDKLEASRSELHDLLDKP-SLTGIPLLVLGNKIDLPGA  137 (186)
T ss_pred             eecCCcccchhhHHHHHHHhcch-hhcCCcEEEecccccCccc
Confidence            99984322 22345555554321 2223679999999995443

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=99.02  E-value=9.2e-10  Score=85.14  Aligned_cols=44  Identities=32%  Similarity=0.329  Sum_probs=39.4

Q ss_pred             CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 036363            3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSR   48 (240)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~   48 (240)
                      +..++++++|++.+|  ..++|+|+||+|||||++.|+|...+.+|
T Consensus        12 ~~~~l~~is~~i~~G--e~~~l~G~nGsGKSTLl~~l~G~~~~~~G   55 (213)
T cd03301          12 NVTALDDLNLDIADG--EFVVLLGPSGCGKTTTLRMIAGLEEPTSG   55 (213)
T ss_pred             CeeeeeceEEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence            456899999999999  99999999999999999999998765554

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=99.02  E-value=7.3e-10  Score=86.14  Aligned_cols=44  Identities=27%  Similarity=0.301  Sum_probs=39.6

Q ss_pred             CCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            4 SRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      +.++++++|++.+|  ..++|+|+||+|||||+++|+|...+.+|.
T Consensus        15 ~~il~~is~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~   58 (220)
T cd03263          15 KPAVDDLSLNVYKG--EIFGLLGHNGAGKTTTLKMLTGELRPTSGT   58 (220)
T ss_pred             ceeecceEEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCCCCcE
Confidence            56899999999999  999999999999999999999987665553

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>PRK09601 GTP-binding protein YchF; Reviewed

Probab=99.02  E-value=1.6e-09  Score=89.06  Aligned_cols=80  Identities=20%  Similarity=0.130  Sum_probs=56.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC----------------cEEEEEeCCCCCCCC
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG----------------QVVNVIDTPGLFDFS   83 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~----------------~~~~l~DtpG~~~~~   83 (240)
                      .+|+|||.+++|||||+|+|++.....+..  +++|.........+++.                ..+.++|+||+....
T Consensus         3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~ny--pftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a   80 (364)
T PRK09601          3 LKCGIVGLPNVGKSTLFNALTKAGAEAANY--PFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGA   80 (364)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCeeccc--ccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCC
Confidence            589999999999999999999987422222  34454444433333121                248899999998654


Q ss_pred             CCCcC---------CCceEEEEEEECC
Q 036363           84 AGSEF---------DEIHAALVVFSVR  101 (240)
Q Consensus        84 ~~~~~---------~~~~~~l~v~~~~  101 (240)
                      .....         +.+|++++|+++.
T Consensus        81 ~~g~glg~~fL~~i~~aD~li~VVd~f  107 (364)
T PRK09601         81 SKGEGLGNQFLANIREVDAIVHVVRCF  107 (364)
T ss_pred             ChHHHHHHHHHHHHHhCCEEEEEEeCC
Confidence            33221         8999999999985

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.01  E-value=1.6e-09  Score=83.90  Aligned_cols=45  Identities=13%  Similarity=0.214  Sum_probs=39.9

Q ss_pred             CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      ++.++++++|.+.+|  ..++|+|+||+|||||++.|+|...+.+|.
T Consensus        23 ~~~il~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~i~G~~~~~~G~   67 (214)
T PRK13543         23 EEPVFGPLDFHVDAG--EALLVQGDNGAGKTTLLRVLAGLLHVESGQ   67 (214)
T ss_pred             CceeeecceEEECCC--CEEEEEcCCCCCHHHHHHHHhCCCCCCCee
Confidence            456899999999999  999999999999999999999987655553

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=99.01  E-value=6.6e-10  Score=86.28  Aligned_cols=44  Identities=25%  Similarity=0.236  Sum_probs=39.5

Q ss_pred             CCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            4 SRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      +.++++++|++++|  ..++|+|+||+|||||+++|+|...+.+|.
T Consensus        17 ~~il~~~s~~i~~G--~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~   60 (218)
T cd03255          17 VQALKGVSLSIEKG--EFVAIVGPSGSGKSTLLNILGGLDRPTSGE   60 (218)
T ss_pred             eeEEeeeEEEEcCC--CEEEEEcCCCCCHHHHHHHHhCCcCCCcee
Confidence            56899999999999  999999999999999999999987665543

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]

Probab=99.01  E-value=2e-09  Score=92.72  Aligned_cols=126  Identities=20%  Similarity=0.254  Sum_probs=89.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCC-----------------------------------------cceeE
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSG-----------------------------------------VTSTC   58 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~-----------------------------------------~t~~~   58 (240)
                      -+|++.|.+.+||||++|+++-....+++..+..                                         .....
T Consensus       110 mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~~~~  189 (749)
T KOG0448|consen  110 MKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDLGAG  189 (749)
T ss_pred             cEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccccCcc
Confidence            6999999999999999999997766555543210                                         00011


Q ss_pred             EEEEEEEeCC------cEEEEEeCCCCCCCCCCCcC-----CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeE
Q 036363           59 EMHRTVLKDG------QVVNVIDTPGLFDFSAGSEF-----DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYM  127 (240)
Q Consensus        59 ~~~~~~~~~~------~~~~l~DtpG~~~~~~~~~~-----~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~  127 (240)
                      ....+.|+++      ..+.++|.||+.-......+     ..+|++++|+.+.+.++..++.++....+.     +|++
T Consensus       190 sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek~Ff~~vs~~-----Kpni  264 (749)
T KOG0448|consen  190 SLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEKQFFHKVSEE-----KPNI  264 (749)
T ss_pred             eEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHHHHHHHhhcc-----CCcE
Confidence            1122334332      26789999999876655554     899999999999989999999998888532     6889


Q ss_pred             EEEEeCCCCCCCCcccHHHHhcc
Q 036363          128 IVVFSGRDELEANDETLEDYLGR  150 (240)
Q Consensus       128 i~v~~~~D~~~~~~~~~~~~~~~  150 (240)
                      +++.||||...+.++-.++.+.+
T Consensus       265 FIlnnkwDasase~ec~e~V~~Q  287 (749)
T KOG0448|consen  265 FILNNKWDASASEPECKEDVLKQ  287 (749)
T ss_pred             EEEechhhhhcccHHHHHHHHHH
Confidence            99999999776654444444443

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=99.01  E-value=1e-09  Score=87.20  Aligned_cols=45  Identities=22%  Similarity=0.321  Sum_probs=39.9

Q ss_pred             CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      ++.++++++|.+.+|  ..++|+|+||+|||||++.|+|...+.+|.
T Consensus        24 ~~~il~~isl~i~~G--e~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~   68 (257)
T PRK11247         24 ERTVLNQLDLHIPAG--QFVAVVGRSGCGKSTLLRLLAGLETPSAGE   68 (257)
T ss_pred             CcceeeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCeE
Confidence            456899999999999  999999999999999999999987655543

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.01  E-value=4.8e-10  Score=88.05  Aligned_cols=45  Identities=22%  Similarity=0.323  Sum_probs=39.7

Q ss_pred             CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      +..++++++|++.+|  ..++|+|+||+|||||+++|+|...+.+|.
T Consensus        12 ~~~~l~~vs~~i~~G--e~~~l~G~nGsGKSTLl~~l~G~~~p~~G~   56 (235)
T cd03261          12 GRTVLKGVDLDVRRG--EILAIIGPSGSGKSTLLRLIVGLLRPDSGE   56 (235)
T ss_pred             CEEEEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCceE
Confidence            356899999999999  999999999999999999999987665543

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=99.01  E-value=1.2e-09  Score=83.57  Aligned_cols=44  Identities=16%  Similarity=0.145  Sum_probs=39.4

Q ss_pred             CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 036363            3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSR   48 (240)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~   48 (240)
                      ++.++++++|.+.+|  ..++|+|+||+|||||++.|+|...+.+|
T Consensus        12 ~~~~l~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~~~G   55 (198)
T TIGR01189        12 ERMLFEGLSFTLNAG--EALQVTGPNGIGKTTLLRILAGLLRPDSG   55 (198)
T ss_pred             CEEEEeeeeEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCCCcc
Confidence            456889999999999  99999999999999999999998765554

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=99.01  E-value=6.6e-10  Score=86.41  Aligned_cols=45  Identities=18%  Similarity=0.134  Sum_probs=39.7

Q ss_pred             CCCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 036363            2 GGSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSR   48 (240)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~   48 (240)
                      +++.++++++|++.+|  ..++|+|+||+|||||+++|+|...+.+|
T Consensus        11 ~~~~il~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~i~G~~~~~~G   55 (220)
T cd03265          11 GDFEAVRGVSFRVRRG--EIFGLLGPNGAGKTTTIKMLTTLLKPTSG   55 (220)
T ss_pred             CCEEeeeceeEEECCC--CEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence            3456899999999999  99999999999999999999998765554

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.01  E-value=1.4e-09  Score=83.40  Aligned_cols=40  Identities=20%  Similarity=0.238  Sum_probs=37.3

Q ss_pred             CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCC
Q 036363            3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRA   44 (240)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~   44 (240)
                      +..++++++|.+++|  ..++|+|+||+|||||++.|+|...
T Consensus        19 ~~~il~~~s~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~   58 (202)
T cd03233          19 KIPILKDFSGVVKPG--EMVLVLGRPGSGCSTLLKALANRTE   58 (202)
T ss_pred             CceeeeeEEEEECCC--cEEEEECCCCCCHHHHHHHhcccCC
Confidence            457899999999999  9999999999999999999999865

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=99.01  E-value=1.4e-09  Score=85.45  Aligned_cols=45  Identities=20%  Similarity=0.170  Sum_probs=39.9

Q ss_pred             CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      ...++++++|.+.+|  ..++|+|+||+|||||+++|+|...+.+|.
T Consensus        33 ~~~il~~vs~~i~~G--e~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~   77 (236)
T cd03267          33 EVEALKGISFTIEKG--EIVGFIGPNGAGKTTTLKILSGLLQPTSGE   77 (236)
T ss_pred             CeeeeeceeEEEcCC--CEEEEECCCCCCHHHHHHHHhCCcCCCceE
Confidence            456899999999999  999999999999999999999987655543

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=99.01  E-value=8.8e-10  Score=89.79  Aligned_cols=46  Identities=24%  Similarity=0.331  Sum_probs=40.2

Q ss_pred             CCCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            2 GGSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      ++..++++++|++++|  ..++|+|+||+|||||+++|+|...+.+|.
T Consensus        15 ~~~~~l~~vsl~i~~G--e~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~   60 (303)
T TIGR01288        15 GDKVVVNDLSFTIARG--ECFGLLGPNGAGKSTIARMLLGMISPDRGK   60 (303)
T ss_pred             CCeEEEcceeEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCCCceE
Confidence            3456899999999999  999999999999999999999987655543

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=99.01  E-value=6.8e-10  Score=85.71  Aligned_cols=45  Identities=27%  Similarity=0.254  Sum_probs=39.4

Q ss_pred             CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      ++.++++++|++.+|  ..++|+|+||+|||||+++|+|...+.+|.
T Consensus        12 ~~~~l~~v~~~i~~G--~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~   56 (210)
T cd03269          12 RVTALDDISFSVEKG--EIFGLLGPNGAGKTTTIRMILGIILPDSGE   56 (210)
T ss_pred             CEEEEeeeEEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCCCceE
Confidence            456889999999999  999999999999999999999987655543

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=99.01  E-value=5.4e-10  Score=90.93  Aligned_cols=46  Identities=28%  Similarity=0.346  Sum_probs=40.5

Q ss_pred             CCCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            2 GGSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      |+..++++++|.+++|  ..++|+|+||+|||||+++|+|...+.+|.
T Consensus        13 ~~~~~l~~is~~i~~G--ei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~   58 (301)
T TIGR03522        13 GTQNALDEVSFEAQKG--RIVGFLGPNGAGKSTTMKIITGYLPPDSGS   58 (301)
T ss_pred             CCEEEEEEeEEEEeCC--eEEEEECCCCCCHHHHHHHHhCCCCCCceE
Confidence            3456899999999999  999999999999999999999987666553

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.00  E-value=1e-09  Score=84.38  Aligned_cols=45  Identities=16%  Similarity=0.137  Sum_probs=39.9

Q ss_pred             CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      ++.++++++|.+.+|  ..++|+|+||+|||||++.|+|...+.+|.
T Consensus        13 ~~~~l~~vs~~i~~G--e~~~l~G~nGsGKSTLl~~l~G~~~p~~G~   57 (204)
T PRK13538         13 ERILFSGLSFTLNAG--ELVQIEGPNGAGKTSLLRILAGLARPDAGE   57 (204)
T ss_pred             CEEEEecceEEECCC--cEEEEECCCCCCHHHHHHHHhCCCCCCCcE
Confidence            456889999999999  999999999999999999999987665553

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=99.00  E-value=1.4e-09  Score=82.87  Aligned_cols=43  Identities=23%  Similarity=0.309  Sum_probs=38.7

Q ss_pred             CCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCC--Ccccc
Q 036363            4 SRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRR--AFKSR   48 (240)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~--~~~~~   48 (240)
                      ..++++++|++.+|  ..++|+|+||+|||||++.|+|..  .+.+|
T Consensus        22 ~~~l~~~~~~i~~G--e~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G   66 (194)
T cd03213          22 KQLLKNVSGKAKPG--ELTAIMGPSGAGKSTLLNALAGRRTGLGVSG   66 (194)
T ss_pred             ccceecceEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCCCCCce
Confidence            57999999999999  999999999999999999999987  54444

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>PRK10908 cell division protein FtsE; Provisional

Probab=99.00  E-value=8.2e-10  Score=85.99  Aligned_cols=45  Identities=22%  Similarity=0.274  Sum_probs=39.9

Q ss_pred             CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      ++.++++++|.+.+|  ..++|+|+||+|||||+++|+|...+.+|.
T Consensus        14 ~~~~l~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~   58 (222)
T PRK10908         14 GRQALQGVTFHMRPG--EMAFLTGHSGAGKSTLLKLICGIERPSAGK   58 (222)
T ss_pred             CCeEEeeeeEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCceE
Confidence            356899999999999  999999999999999999999987655553

>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.00  E-value=6e-11  Score=85.74  Aligned_cols=117  Identities=21%  Similarity=0.177  Sum_probs=80.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEEEE
Q 036363           19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAALV   96 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~   96 (240)
                      ..+++++|..++||||+|.+.+...+........+......-..+.. .+..+.+|||.|...++.....  +++.+.++
T Consensus        20 aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~-Edvr~mlWdtagqeEfDaItkAyyrgaqa~vL   98 (246)
T KOG4252|consen   20 AIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLI-EDVRSMLWDTAGQEEFDAITKAYYRGAQASVL   98 (246)
T ss_pred             hEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhH-HHHHHHHHHhccchhHHHHHHHHhccccceEE
Confidence            47999999999999999999996654222222222221111011111 2346679999999998776544  99999999


Q ss_pred             EEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363           97 VFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        97 v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~  139 (240)
                      |++.+++.+.+. ..+-..+....+.   .|+++|-||+|.++.
T Consensus        99 VFSTTDr~SFea~~~w~~kv~~e~~~---IPtV~vqNKIDlved  139 (246)
T KOG4252|consen   99 VFSTTDRYSFEATLEWYNKVQKETER---IPTVFVQNKIDLVED  139 (246)
T ss_pred             EEecccHHHHHHHHHHHHHHHHHhcc---CCeEEeeccchhhHh
Confidence            999998888876 3455556555444   689999999997654

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.00  E-value=5.9e-10  Score=82.52  Aligned_cols=44  Identities=25%  Similarity=0.289  Sum_probs=39.1

Q ss_pred             CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 036363            3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSR   48 (240)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~   48 (240)
                      +..++++++|.+.+|  ..++|+|+||+|||||++.|+|...+.++
T Consensus        12 ~~~vl~~i~~~i~~G--e~~~l~G~nGsGKSTLl~~i~G~~~~~~G   55 (163)
T cd03216          12 GVKALDGVSLSVRRG--EVHALLGENGAGKSTLMKILSGLYKPDSG   55 (163)
T ss_pred             CeEEEeeeEEEEeCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCe
Confidence            446889999999999  99999999999999999999998765444

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=99.00  E-value=8.2e-10  Score=85.50  Aligned_cols=45  Identities=20%  Similarity=0.234  Sum_probs=39.6

Q ss_pred             CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      +..++++++|.+.+|  ..++|+|+||+|||||++.|+|...+.+|.
T Consensus        14 ~~~il~~is~~i~~G--~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~   58 (214)
T TIGR02673        14 GVAALHDVSLHIRKG--EFLFLTGPSGAGKTTLLKLLYGALTPSRGQ   58 (214)
T ss_pred             CceeecceeEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCce
Confidence            356899999999999  999999999999999999999987655543

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]

Probab=99.00  E-value=2.8e-09  Score=91.53  Aligned_cols=117  Identities=22%  Similarity=0.278  Sum_probs=83.8

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCC---------------CCCcceeEEEEEEEEe----CCcEEEEEeC
Q 036363           16 SNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRAS---------------SSGVTSTCEMHRTVLK----DGQVVNVIDT   76 (240)
Q Consensus        16 ~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~---------------~~~~t~~~~~~~~~~~----~~~~~~l~Dt   76 (240)
                      +...++|+++|+-++|||+|+..|.+..-+.....               ..+++...........    ..+.++++||
T Consensus       125 p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDT  204 (971)
T KOG0468|consen  125 PERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDT  204 (971)
T ss_pred             cceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecC
Confidence            34568999999999999999999987654322110               1133332222222221    2457789999


Q ss_pred             CCCCCCCCCCcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363           77 PGLFDFSAGSEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDEL  137 (240)
Q Consensus        77 pG~~~~~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~  137 (240)
                      ||+.+|......  ..+|++++|+|+.++......+.++...+.     ..++++|+||.|.+
T Consensus       205 PGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq~-----~~~i~vviNKiDRL  262 (971)
T KOG0468|consen  205 PGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQN-----RLPIVVVINKVDRL  262 (971)
T ss_pred             CCcccchHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHhc-----cCcEEEEEehhHHH
Confidence            999999876655  899999999999988888877777776432     25799999999965

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=99.00  E-value=3.2e-10  Score=87.16  Aligned_cols=47  Identities=30%  Similarity=0.333  Sum_probs=41.4

Q ss_pred             CCCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCC
Q 036363            2 GGSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRAS   50 (240)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~   50 (240)
                      ++..+.+++||+++.|  ..++++|++||||||++++|.....+.+|..
T Consensus        12 ~~~~av~~v~l~I~~g--ef~vliGpSGsGKTTtLkMINrLiept~G~I   58 (309)
T COG1125          12 GNKKAVDDVNLTIEEG--EFLVLIGPSGSGKTTTLKMINRLIEPTSGEI   58 (309)
T ss_pred             CCceeeeeeeEEecCC--eEEEEECCCCCcHHHHHHHHhcccCCCCceE
Confidence            4678899999999999  9999999999999999999998877666543

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=99.00  E-value=8.6e-10  Score=85.63  Aligned_cols=43  Identities=21%  Similarity=0.226  Sum_probs=38.8

Q ss_pred             CccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            5 RIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      .++++++|++.+|  ..++|+|+||+|||||++.|+|...+.+|.
T Consensus        19 ~il~~~sl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~   61 (218)
T cd03266          19 QAVDGVSFTVKPG--EVTGLLGPNGAGKTTTLRMLAGLLEPDAGF   61 (218)
T ss_pred             eeecceEEEEcCC--cEEEEECCCCCCHHHHHHHHhCCcCCCCce
Confidence            6899999999999  999999999999999999999987655543

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=98.99  E-value=2.4e-09  Score=85.13  Aligned_cols=45  Identities=29%  Similarity=0.396  Sum_probs=39.8

Q ss_pred             CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      +..++++++|.+.+|  ..++|+|+||+|||||+++|+|...+.+|.
T Consensus        13 ~~~il~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~   57 (255)
T PRK11248         13 GKPALEDINLTLESG--ELLVVLGPSGCGKTTLLNLIAGFVPYQHGS   57 (255)
T ss_pred             CeeeEeeeeEEECCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCcE
Confidence            456889999999999  999999999999999999999987665543

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=98.99  E-value=2.8e-08  Score=77.16  Aligned_cols=70  Identities=20%  Similarity=0.104  Sum_probs=42.2

Q ss_pred             cEEEEEeCCCCCCCCCCCcC----------CCceEEEEEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363           69 QVVNVIDTPGLFDFSAGSEF----------DEIHAALVVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDEL  137 (240)
Q Consensus        69 ~~~~l~DtpG~~~~~~~~~~----------~~~~~~l~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~  137 (240)
                      ..+.++||||+....+=...          ..+-+++||+|....-++.. ...+-.....+-. ..-|+++++||.|..
T Consensus       116 ~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyk-tklp~ivvfNK~Dv~  194 (366)
T KOG1532|consen  116 FDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILYK-TKLPFIVVFNKTDVS  194 (366)
T ss_pred             cCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHHh-ccCCeEEEEeccccc
Confidence            35789999998653211111          78889999998863333332 2222222333322 236799999999965


Q ss_pred             CC
Q 036363          138 EA  139 (240)
Q Consensus       138 ~~  139 (240)
                      ..
T Consensus       195 d~  196 (366)
T KOG1532|consen  195 DS  196 (366)
T ss_pred             cc
Confidence            54

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=98.99  E-value=3.4e-09  Score=87.10  Aligned_cols=148  Identities=20%  Similarity=0.348  Sum_probs=103.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh--CCCCccccCC------------------CCCcceeEEEEEEEEeCCcEEEEEeCCCC
Q 036363           20 RTVVLVGHTGNGKSATGNSIL--GRRAFKSRAS------------------SSGVTSTCEMHRTVLKDGQVVNVIDTPGL   79 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~--g~~~~~~~~~------------------~~~~t~~~~~~~~~~~~~~~~~l~DtpG~   79 (240)
                      ++.+||-++.+|||||-..|+  |......|..                  ..|++++...-...+ .++.++++||||+
T Consensus        13 RTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y-~~~~iNLLDTPGH   91 (528)
T COG4108          13 RTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDY-ADCLVNLLDTPGH   91 (528)
T ss_pred             cceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEecc-CCeEEeccCCCCc
Confidence            899999999999999997765  2222111111                  125556666666666 8999999999999


Q ss_pred             CCCCCCCcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCCccc----HHHHhcccC-
Q 036363           80 FDFSAGSEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEANDET----LEDYLGREC-  152 (240)
Q Consensus        80 ~~~~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~~~~----~~~~~~~~~-  152 (240)
                      .||......  ..+|+++.|+|+..++.+...+.++-.+-    . ..|++-.+||+|.-..++..    +++.+.-.+ 
T Consensus        92 eDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~KLfeVcrl----R-~iPI~TFiNKlDR~~rdP~ELLdEiE~~L~i~~~  166 (528)
T COG4108          92 EDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTLKLFEVCRL----R-DIPIFTFINKLDREGRDPLELLDEIEEELGIQCA  166 (528)
T ss_pred             cccchhHHHHHHhhheeeEEEecccCccHHHHHHHHHHhh----c-CCceEEEeeccccccCChHHHHHHHHHHhCccee
Confidence            999766555  88999999999998888888777766542    1 25789999999976443222    233333211 


Q ss_pred             --------CchHHHHHHHhCCcEEEEeCC
Q 036363          153 --------PKPLKEILHLFDNRCVLFDNK  173 (240)
Q Consensus       153 --------~~~~~~~~~~~~~~~~~~~~~  173 (240)
                              ...++++.+.....++.|...
T Consensus       167 PitWPIG~gk~F~Gvy~l~~~~v~~y~~~  195 (528)
T COG4108         167 PITWPIGMGKDFKGVYHLYNDEVELYESG  195 (528)
T ss_pred             cccccccCCcccceeeeeccCEEEEeccC
Confidence                    245577777777777777765

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=98.99  E-value=2e-09  Score=78.03  Aligned_cols=44  Identities=30%  Similarity=0.320  Sum_probs=38.6

Q ss_pred             CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 036363            3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSR   48 (240)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~   48 (240)
                      +..++++++|.+.+|  ..++|+|+||+|||||+++|+|...+.++
T Consensus        12 ~~~~l~~~~~~~~~G--e~~~i~G~nGsGKStLl~~l~G~~~~~~G   55 (144)
T cd03221          12 GKLLLKDISLTINPG--DRIGLVGRNGAGKSTLLKLIAGELEPDEG   55 (144)
T ss_pred             CceEEEeeEEEECCC--CEEEEECCCCCCHHHHHHHHcCCCCCCce
Confidence            346889999999999  99999999999999999999998765443

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=98.98  E-value=1e-09  Score=84.57  Aligned_cols=44  Identities=30%  Similarity=0.326  Sum_probs=39.4

Q ss_pred             CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 036363            3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSR   48 (240)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~   48 (240)
                      +..++++++|.+.+|  ..++|+|+||+|||||+++|+|...+.+|
T Consensus        12 ~~~~l~~~~~~i~~G--~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G   55 (208)
T cd03268          12 KKRVLDDISLHVKKG--EIYGFLGPNGAGKTTTMKIILGLIKPDSG   55 (208)
T ss_pred             CeEeEeeeEEEEcCC--cEEEEECCCCCCHHHHHHHHhCCcCCCce
Confidence            456899999999999  99999999999999999999998765554

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=98.98  E-value=6.1e-10  Score=87.18  Aligned_cols=45  Identities=24%  Similarity=0.380  Sum_probs=39.9

Q ss_pred             CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      ++.++++++|++.+|  ..++|+|+||+|||||+++|+|...+.+|.
T Consensus        12 ~~~~l~~vs~~i~~G--e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~   56 (230)
T TIGR03410        12 QSHILRGVSLEVPKG--EVTCVLGRNGVGKTTLLKTLMGLLPVKSGS   56 (230)
T ss_pred             CeEEecceeeEECCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCCE
Confidence            456899999999999  999999999999999999999987665553

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=98.98  E-value=1.5e-09  Score=84.34  Aligned_cols=43  Identities=30%  Similarity=0.280  Sum_probs=38.7

Q ss_pred             CCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 036363            4 SRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSR   48 (240)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~   48 (240)
                      ..++++++|.+.+|  ..++|+|+||+|||||+++|+|...+.+|
T Consensus        17 ~~il~~vs~~i~~G--~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G   59 (220)
T cd03293          17 VTALEDISLSVEEG--EFVALVGPSGCGKSTLLRIIAGLERPTSG   59 (220)
T ss_pred             eEEEeceeEEEeCC--cEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence            46899999999999  99999999999999999999998765554

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=98.98  E-value=7.9e-10  Score=85.72  Aligned_cols=43  Identities=30%  Similarity=0.346  Sum_probs=38.6

Q ss_pred             CCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 036363            4 SRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSR   48 (240)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~   48 (240)
                      +.++++++|++.+|  ..++|+|+||+|||||++.|+|...+.+|
T Consensus        16 ~~il~~isl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G   58 (216)
T TIGR00960        16 QPALDNLNFHITKG--EMVFLVGHSGAGKSTFLKLILGIEKPTRG   58 (216)
T ss_pred             eeEEEeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence            35899999999999  99999999999999999999998765554

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=98.98  E-value=1.6e-09  Score=86.75  Aligned_cols=45  Identities=22%  Similarity=0.166  Sum_probs=39.6

Q ss_pred             CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      ...++++++|++.+|  ..++|+|+||+|||||+++|+|...+.+|.
T Consensus        36 ~~~il~~is~~i~~G--e~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~   80 (269)
T cd03294          36 QTVGVNDVSLDVREG--EIFVIMGLSGSGKSTLLRCINRLIEPTSGK   80 (269)
T ss_pred             CceEeeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCeE
Confidence            455789999999999  999999999999999999999987665543

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=98.98  E-value=7.2e-10  Score=86.29  Aligned_cols=44  Identities=32%  Similarity=0.403  Sum_probs=39.3

Q ss_pred             CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 036363            3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSR   48 (240)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~   48 (240)
                      +..++++++|++.+|  ..++|+|+||+|||||+++|+|...+.+|
T Consensus        12 ~~~~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G   55 (222)
T cd03224          12 KSQILFGVSLTVPEG--EIVALLGRNGAGKTTLLKTIMGLLPPRSG   55 (222)
T ss_pred             CeeEeeeeeEEEcCC--eEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            456889999999999  99999999999999999999998765554

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.97  E-value=2.2e-09  Score=77.54  Aligned_cols=57  Identities=30%  Similarity=0.449  Sum_probs=40.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCC
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFD   81 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~   81 (240)
                      .+++++|.+|+|||||+|+|++........ ..+.|.....  ... + ..++++||||+..
T Consensus        84 ~~~~~~G~~~vGKstlin~l~~~~~~~~~~-~~~~~~~~~~--~~~-~-~~~~i~DtpG~~~  140 (141)
T cd01857          84 ATIGLVGYPNVGKSSLINALVGKKKVSVSA-TPGKTKHFQT--IFL-T-PTITLCDCPGLVF  140 (141)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCceeeCC-CCCcccceEE--EEe-C-CCEEEEECCCcCC
Confidence            389999999999999999999987543322 2344443332  223 2 3679999999864

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=98.97  E-value=1e-09  Score=84.87  Aligned_cols=45  Identities=24%  Similarity=0.245  Sum_probs=39.7

Q ss_pred             CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      ++.++++++|++.+|  ..++|+|+||+|||||+++|+|...+.+|.
T Consensus        12 ~~~~l~~~s~~i~~G--~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~   56 (213)
T cd03262          12 DFHVLKGIDLTVKKG--EVVVIIGPSGSGKSTLLRCINLLEEPDSGT   56 (213)
T ss_pred             CeEeecCceEEECCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCce
Confidence            456889999999999  999999999999999999999987655543

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=98.97  E-value=1.4e-09  Score=81.00  Aligned_cols=55  Identities=36%  Similarity=0.485  Sum_probs=41.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCC
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGL   79 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~   79 (240)
                      .+++++|.+|+|||||+|+|+|......+.. .|+|.......  +  +..+.++||||+
T Consensus       118 ~~~~~vG~pnvGKSslin~l~~~~~~~~~~~-pg~T~~~~~~~--~--~~~~~l~DtPGi  172 (172)
T cd04178         118 ITVGVVGFPNVGKSSLINSLKRSRACNVGAT-PGVTKSMQEVH--L--DKKVKLLDSPGI  172 (172)
T ss_pred             cEEEEEcCCCCCHHHHHHHHhCcccceecCC-CCeEcceEEEE--e--CCCEEEEECcCC
Confidence            6999999999999999999999876555443 45555444332  2  346889999996

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=98.97  E-value=1.1e-09  Score=83.93  Aligned_cols=39  Identities=31%  Similarity=0.497  Sum_probs=36.0

Q ss_pred             CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCC
Q 036363            3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRR   43 (240)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~   43 (240)
                      +..++++++|.+.+|  ..++|+|+||+|||||++.|+|..
T Consensus        12 ~~~~l~~is~~i~~G--e~~~i~G~nGsGKStLl~~l~G~~   50 (200)
T cd03217          12 GKEILKGVNLTIKKG--EVHALMGPNGSGKSTLAKTIMGHP   50 (200)
T ss_pred             CEEeeeccceEECCC--cEEEEECCCCCCHHHHHHHHhCCC
Confidence            346889999999999  999999999999999999999973

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=98.97  E-value=6.4e-10  Score=84.98  Aligned_cols=77  Identities=18%  Similarity=0.210  Sum_probs=53.4

Q ss_pred             CCCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCC
Q 036363            2 GGSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFD   81 (240)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~   81 (240)
                      |...+.++++|.+++|  ...+++|+|||||||++++|+|...+.++......    ....... .++..+++...|++.
T Consensus        13 g~k~av~~isf~v~~G--~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g----~~~~~~~-~~rIGyLPEERGLy~   85 (300)
T COG4152          13 GDKKAVDNISFEVPPG--EIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNG----GPLSQEI-KNRIGYLPEERGLYP   85 (300)
T ss_pred             CceeeecceeeeecCC--eEEEeecCCCCCccchHHHHhccCCccCceEEEcC----cchhhhh-hhhcccChhhhccCc
Confidence            5678899999999999  99999999999999999999998776555431110    0001111 233445666666665


Q ss_pred             CCCC
Q 036363           82 FSAG   85 (240)
Q Consensus        82 ~~~~   85 (240)
                      ..+.
T Consensus        86 k~tv   89 (300)
T COG4152          86 KMTV   89 (300)
T ss_pred             cCcH
Confidence            5544

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.97  E-value=6.5e-10  Score=87.75  Aligned_cols=45  Identities=24%  Similarity=0.190  Sum_probs=40.7

Q ss_pred             CCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCC
Q 036363            4 SRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRAS   50 (240)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~   50 (240)
                      ..++++++|.++.|  ..+++||.+|+|||||++.|-+...|.+|..
T Consensus        19 ~~al~~vsL~I~~G--eI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v   63 (339)
T COG1135          19 VTALDDVSLEIPKG--EIFGIIGYSGAGKSTLLRLINLLERPTSGSV   63 (339)
T ss_pred             eeeeccceEEEcCC--cEEEEEcCCCCcHHHHHHHHhccCCCCCceE
Confidence            46889999999999  9999999999999999999999888777654

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=98.95  E-value=7e-10  Score=83.37  Aligned_cols=42  Identities=19%  Similarity=0.296  Sum_probs=38.2

Q ss_pred             CccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 036363            5 RIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSR   48 (240)
Q Consensus         5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~   48 (240)
                      .++++++|++++|  ..++|+|+||+|||||+++|+|...+.+|
T Consensus        16 ~~l~~i~~~i~~G--e~~~i~G~nGsGKStLl~~l~G~~~~~~G   57 (178)
T cd03247          16 QVLKNLSLELKQG--EKIALLGRSGSGKSTLLQLLTGDLKPQQG   57 (178)
T ss_pred             cceEEEEEEEcCC--CEEEEECCCCCCHHHHHHHHhccCCCCCC
Confidence            5899999999999  99999999999999999999998765554

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.95  E-value=4.5e-09  Score=89.44  Aligned_cols=153  Identities=19%  Similarity=0.288  Sum_probs=113.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCCccccC----------------CCCCcceeEEEEEEEEeCCcEEEEEeCCCCC
Q 036363           17 NGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA----------------SSSGVTSTCEMHRTVLKDGQVVNVIDTPGLF   80 (240)
Q Consensus        17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~----------------~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~   80 (240)
                      ...++|+++.+..+||||+-..++-........                ...++|.......+.| .+..+++|||||+.
T Consensus        37 ~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w-~~~~iNiIDTPGHv  115 (721)
T KOG0465|consen   37 NKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTW-RDYRINIIDTPGHV  115 (721)
T ss_pred             hhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeee-ccceeEEecCCCce
Confidence            455899999999999999999887544322111                1236677777777788 78999999999999


Q ss_pred             CCCCCCcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCCcc-cHHH---Hhccc---
Q 036363           81 DFSAGSEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEANDE-TLED---YLGRE---  151 (240)
Q Consensus        81 ~~~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~~~-~~~~---~~~~~---  151 (240)
                      +|.-....  +-.|+.++|+++..+...+....++.+...     ..|.+..+||+|.+....- .++.   .++..   
T Consensus       116 DFT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~ry-----~vP~i~FiNKmDRmGa~~~~~l~~i~~kl~~~~a~  190 (721)
T KOG0465|consen  116 DFTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQMKRY-----NVPRICFINKMDRMGASPFRTLNQIRTKLNHKPAV  190 (721)
T ss_pred             eEEEEehhhhhhccCeEEEEEcccceehhhHHHHHHHHhc-----CCCeEEEEehhhhcCCChHHHHHHHHhhcCCchhe
Confidence            99776655  888999999988878888888888888643     2568899999999876532 2222   11110   


Q ss_pred             ------CCchHHHHHHHhCCcEEEEeCCCc
Q 036363          152 ------CPKPLKEILHLFDNRCVLFDNKTK  175 (240)
Q Consensus       152 ------~~~~~~~~~~~~~~~~~~~~~~~~  175 (240)
                            ....++++++...++...|+....
T Consensus       191 vqiPig~e~~f~GvvDlv~~kai~~~g~~g  220 (721)
T KOG0465|consen  191 VQIPIGSESNFKGVVDLVNGKAIYWDGENG  220 (721)
T ss_pred             eEccccccccchhHHhhhhceEEEEcCCCC
Confidence                  135679999999999999986644

>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.94  E-value=4.8e-09  Score=72.98  Aligned_cols=123  Identities=15%  Similarity=0.137  Sum_probs=81.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363           18 GVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAAL   95 (240)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l   95 (240)
                      .+.+|+.+|-.++||||++.-|.-.... .    ...|+......+.+ .+..+++||..|.......+..  .+..++|
T Consensus        16 KE~~ilmlGLd~aGKTtiLyKLkl~~~~-~----~ipTvGFnvetVty-kN~kfNvwdvGGqd~iRplWrhYy~gtqglI   89 (180)
T KOG0071|consen   16 KEMRILMLGLDAAGKTTILYKLKLGQSV-T----TIPTVGFNVETVTY-KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLI   89 (180)
T ss_pred             ccceEEEEecccCCceehhhHHhcCCCc-c----cccccceeEEEEEe-eeeEEeeeeccCchhhhHHHHhhccCCceEE
Confidence            3489999999999999999888654321 1    22344455555666 7889999999999988887777  8999999


Q ss_pred             EEEECCCCCCHHH-HHHHHHHHHHhCCCc--CCeEEEEEeCCCCCCCC-cccHHHHhc
Q 036363           96 VVFSVRSRFSQEE-EATLHSLQTLFGKNC--FDYMIVVFSGRDELEAN-DETLEDYLG  149 (240)
Q Consensus        96 ~v~~~~~~~~~~~-~~~l~~l~~~~~~~~--~~~~i~v~~~~D~~~~~-~~~~~~~~~  149 (240)
                      ||+|..++-..++ +..+..+.   +...  ..+++++.||-|.-... +.++.+++.
T Consensus        90 FV~Dsa~~dr~eeAr~ELh~ii---~~~em~~~~~LvlANkQDlp~A~~pqei~d~le  144 (180)
T KOG0071|consen   90 FVVDSADRDRIEEARNELHRII---NDREMRDAIILILANKQDLPDAMKPQEIQDKLE  144 (180)
T ss_pred             EEEeccchhhHHHHHHHHHHHh---CCHhhhcceEEEEecCcccccccCHHHHHHHhc
Confidence            9999875533332 34444433   3221  13566778999954332 234444443

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=98.94  E-value=1.4e-09  Score=82.07  Aligned_cols=41  Identities=22%  Similarity=0.345  Sum_probs=37.2

Q ss_pred             ccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 036363            6 IDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSR   48 (240)
Q Consensus         6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~   48 (240)
                      ++++++|++.+|  ..++|+|+||+|||||++.|+|...+.+|
T Consensus        15 ~l~~vs~~i~~G--~~~~i~G~nGsGKSTLl~~l~G~~~~~~G   55 (182)
T cd03215          15 AVRDVSFEVRAG--EIVGIAGLVGNGQTELAEALFGLRPPASG   55 (182)
T ss_pred             eecceEEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            578999999999  99999999999999999999998766554

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.94  E-value=1.5e-07  Score=76.04  Aligned_cols=116  Identities=20%  Similarity=0.305  Sum_probs=77.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEE------------EEe---------------------
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRT------------VLK---------------------   66 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~------------~~~---------------------   66 (240)
                      .-|+++|+-..||||+|+-|+....+.....+-++|-.......            ...                     
T Consensus        59 Pmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf~c  138 (532)
T KOG1954|consen   59 PMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRFMC  138 (532)
T ss_pred             ceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHHHH
Confidence            68999999999999999999988765322222111211110000            000                     


Q ss_pred             ---C---CcEEEEEeCCCCCCCCCCCcC-------------CCceEEEEEEECC-CCCCHHHHHHHHHHHHHhCCCcCCe
Q 036363           67 ---D---GQVVNVIDTPGLFDFSAGSEF-------------DEIHAALVVFSVR-SRFSQEEEATLHSLQTLFGKNCFDY  126 (240)
Q Consensus        67 ---~---~~~~~l~DtpG~~~~~~~~~~-------------~~~~~~l~v~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~  126 (240)
                         .   -..++++||||+.+.......             ..+|.+++++|+. -..+.+-.+.+..++   |.+  ..
T Consensus       139 sqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLk---G~E--dk  213 (532)
T KOG1954|consen  139 SQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALK---GHE--DK  213 (532)
T ss_pred             hcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhh---CCc--ce
Confidence               0   026899999999877655322             8999999999997 345556577777775   222  45


Q ss_pred             EEEEEeCCCCCCCC
Q 036363          127 MIVVFSGRDELEAN  140 (240)
Q Consensus       127 ~i~v~~~~D~~~~~  140 (240)
                      +=+|+||+|.++..
T Consensus       214 iRVVLNKADqVdtq  227 (532)
T KOG1954|consen  214 IRVVLNKADQVDTQ  227 (532)
T ss_pred             eEEEeccccccCHH
Confidence            77999999988763

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=98.93  E-value=1.5e-09  Score=83.83  Aligned_cols=44  Identities=23%  Similarity=0.174  Sum_probs=37.9

Q ss_pred             CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      +..++++++|.+.+|   .++|+|+||+|||||+++|+|...+.+|.
T Consensus        12 ~~~~l~~vs~~i~~g---~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~   55 (211)
T cd03264          12 KKRALDGVSLTLGPG---MYGLLGPNGAGKTTLMRILATLTPPSSGT   55 (211)
T ss_pred             CEEEEcceeEEEcCC---cEEEECCCCCCHHHHHHHHhCCCCCCccE
Confidence            346889999999996   89999999999999999999987655543

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=98.93  E-value=5.5e-09  Score=82.48  Aligned_cols=48  Identities=29%  Similarity=0.284  Sum_probs=42.0

Q ss_pred             CCCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCC
Q 036363            2 GGSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASS   51 (240)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~   51 (240)
                      |....++++++.+++|  ..++++||||||||||++.|+|...+..|...
T Consensus        13 ~~~~a~~di~l~i~~G--e~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~   60 (345)
T COG1118          13 GAFGALDDISLDIKSG--ELVALLGPSGAGKSTLLRIIAGLETPDAGRIR   60 (345)
T ss_pred             ccccccccceeeecCC--cEEEEECCCCCcHHHHHHHHhCcCCCCCceEE
Confidence            3456778999999999  99999999999999999999999887776543

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=98.93  E-value=1.5e-10  Score=88.50  Aligned_cols=46  Identities=30%  Similarity=0.331  Sum_probs=42.0

Q ss_pred             CCCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            2 GGSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      ||-.+.++++|++.+|  ..+++|||||+|||||+|.|+|...+.++.
T Consensus        15 GGl~Al~~Vsl~v~~G--ei~~LIGPNGAGKTTlfNlitG~~~P~~G~   60 (250)
T COG0411          15 GGLTAVNDVSLEVRPG--EIVGLIGPNGAGKTTLFNLITGFYKPSSGT   60 (250)
T ss_pred             CCEEEEeceeEEEcCC--eEEEEECCCCCCceeeeeeecccccCCCce
Confidence            6778899999999999  999999999999999999999988776654

>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

Probab=98.93  E-value=1e-08  Score=78.57  Aligned_cols=45  Identities=22%  Similarity=0.294  Sum_probs=41.3

Q ss_pred             CCCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 036363            2 GGSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSR   48 (240)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~   48 (240)
                      +++.+++++++++++|  .+-+|+|+||||||||++.++|..++.++
T Consensus        42 ~gk~iL~~isW~V~~g--e~W~I~G~NGsGKTTLL~ll~~~~~pssg   86 (257)
T COG1119          42 NGKKILGDLSWQVNPG--EHWAIVGPNGAGKTTLLSLLTGEHPPSSG   86 (257)
T ss_pred             CCEeeccccceeecCC--CcEEEECCCCCCHHHHHHHHhcccCCCCC
Confidence            5788999999999999  99999999999999999999999876544

>PRK09602 translation-associated GTPase; Reviewed

Probab=98.93  E-value=1e-08  Score=85.96  Aligned_cols=80  Identities=21%  Similarity=0.076  Sum_probs=53.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEE--------------------eC---CcEEEEEeC
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVL--------------------KD---GQVVNVIDT   76 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~--------------------~~---~~~~~l~Dt   76 (240)
                      .+|+|||.+++|||||+|+|++.....+..  .++|..........                    .+   ...+.++||
T Consensus         2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y--~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~   79 (396)
T PRK09602          2 ITIGLVGKPNVGKSTFFNAATLADVEIANY--PFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDV   79 (396)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCcccccCC--CCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEc
Confidence            589999999999999999999876432222  23333333222110                    01   135789999


Q ss_pred             CCCCCCCCCCcC---------CCceEEEEEEECC
Q 036363           77 PGLFDFSAGSEF---------DEIHAALVVFSVR  101 (240)
Q Consensus        77 pG~~~~~~~~~~---------~~~~~~l~v~~~~  101 (240)
                      ||+.........         +.+|++++|+++.
T Consensus        80 aGl~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~  113 (396)
T PRK09602         80 AGLVPGAHEGRGLGNQFLDDLRQADALIHVVDAS  113 (396)
T ss_pred             CCcCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence            999754332221         8999999999996

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=98.93  E-value=2.1e-09  Score=89.21  Aligned_cols=45  Identities=24%  Similarity=0.340  Sum_probs=39.9

Q ss_pred             CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      +..++++++|++.+|  ..++|+|+||+|||||+++|+|...+.+|.
T Consensus        16 ~~~~l~~vsl~i~~G--e~~~llG~sGsGKSTLLr~iaGl~~p~~G~   60 (356)
T PRK11650         16 KTQVIKGIDLDVADG--EFIVLVGPSGCGKSTLLRMVAGLERITSGE   60 (356)
T ss_pred             CCEEEeeeeEEEcCC--CEEEEECCCCCcHHHHHHHHHCCCCCCceE
Confidence            456889999999999  899999999999999999999987766553

>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.93  E-value=1.2e-09  Score=77.51  Aligned_cols=157  Identities=13%  Similarity=0.051  Sum_probs=94.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeC--------CcEEEEEeCCCCCCCCCCCcC--CC
Q 036363           21 TVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKD--------GQVVNVIDTPGLFDFSAGSEF--DE   90 (240)
Q Consensus        21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--------~~~~~l~DtpG~~~~~~~~~~--~~   90 (240)
                      +...+|.+|+||||++...+...+...-.+..|+........+....        ...+.+|||.|...|.+....  +.
T Consensus        11 kfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAFfRD   90 (219)
T KOG0081|consen   11 KFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAFFRD   90 (219)
T ss_pred             HHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHHHHh
Confidence            56778999999999998877654322222222222222211111100        125689999999999876665  88


Q ss_pred             ceEEEEEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCCcccHHHHhcccCCchHHHHHHHhCCcEEE
Q 036363           91 IHAALVVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELEANDETLEDYLGRECPKPLKEILHLFDNRCVL  169 (240)
Q Consensus        91 ~~~~l~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (240)
                      +.++++++|.++..+..+ ..++..++-.--.+ .|-+|++.||+|.....  .    +   .......+.+..+.+|..
T Consensus        91 AMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE-~PDivlcGNK~DL~~~R--~----V---s~~qa~~La~kyglPYfE  160 (219)
T KOG0081|consen   91 AMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCE-NPDIVLCGNKADLEDQR--V----V---SEDQAAALADKYGLPYFE  160 (219)
T ss_pred             hccceEEEeccchHHHHHHHHHHHHHHHhhccC-CCCEEEEcCccchhhhh--h----h---hHHHHHHHHHHhCCCeee
Confidence            899999999997777665 45666665432222 25689999999943221  1    1   122345667778888765


Q ss_pred             EeCCCcchhhhHHHHHHHHH
Q 036363          170 FDNKTKDAAKRTEQIGKLRS  189 (240)
Q Consensus       170 ~~~~~~~~~~~~~~~~~ll~  189 (240)
                      -+.....  +....+.-|+.
T Consensus       161 TSA~tg~--Nv~kave~Lld  178 (219)
T KOG0081|consen  161 TSACTGT--NVEKAVELLLD  178 (219)
T ss_pred             eccccCc--CHHHHHHHHHH
Confidence            5533221  22334454555

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.92  E-value=1.1e-09  Score=82.09  Aligned_cols=46  Identities=24%  Similarity=0.362  Sum_probs=42.1

Q ss_pred             CCCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            2 GGSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      .|+.+++++++...+|  ..++|+||||+|||||++.|+|...+.++.
T Consensus        12 ~Gr~ll~~vsl~~~pG--ev~ailGPNGAGKSTlLk~LsGel~p~~G~   57 (259)
T COG4559          12 AGRRLLDGVSLDLRPG--EVLAILGPNGAGKSTLLKALSGELSPDSGE   57 (259)
T ss_pred             ecceeccCcceeccCC--cEEEEECCCCccHHHHHHHhhCccCCCCCe
Confidence            5788999999999999  999999999999999999999998766654

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=98.92  E-value=2.5e-09  Score=85.14  Aligned_cols=46  Identities=30%  Similarity=0.429  Sum_probs=40.3

Q ss_pred             CCCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            2 GGSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      ++..++++++|++.+|  ..++|+|+||+|||||+++|+|...+.+|.
T Consensus        13 ~~~~il~~is~~i~~G--e~~~i~G~nGsGKSTLl~~i~G~~~p~~G~   58 (258)
T PRK13548         13 GGRTLLDDVSLTLRPG--EVVAILGPNGAGKSTLLRALSGELSPDSGE   58 (258)
T ss_pred             CCeeeeeeeeEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCCE
Confidence            3456899999999999  999999999999999999999987665553

>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.91  E-value=3.7e-09  Score=73.55  Aligned_cols=115  Identities=16%  Similarity=0.171  Sum_probs=74.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEe-CCcEEEEEeCCCCCCCCCCCcC--CCceEE
Q 036363           18 GVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLK-DGQVVNVIDTPGLFDFSAGSEF--DEIHAA   94 (240)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~--~~~~~~   94 (240)
                      -..+..++|..|+|||.|+..++...+...-  +....+.....-+++. ....+.+|||.|...|......  +++.+.
T Consensus        10 yifkyiiigdmgvgkscllhqftekkfmadc--phtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaaga   87 (215)
T KOG0097|consen   10 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADC--PHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGA   87 (215)
T ss_pred             heEEEEEEccccccHHHHHHHHHHHHHhhcC--CcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccce
Confidence            3478899999999999999998866542221  1222222222223331 2336789999999998876665  899999


Q ss_pred             EEEEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCC
Q 036363           95 LVVFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDE  136 (240)
Q Consensus        95 l~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~  136 (240)
                      +.|+|++.+.+.... .++...+.+  .....-++++.||+|.
T Consensus        88 lmvyditrrstynhlsswl~dar~l--tnpnt~i~lignkadl  128 (215)
T KOG0097|consen   88 LMVYDITRRSTYNHLSSWLTDARNL--TNPNTVIFLIGNKADL  128 (215)
T ss_pred             eEEEEehhhhhhhhHHHHHhhhhcc--CCCceEEEEecchhhh
Confidence            999999976666654 344333332  1112346677899993

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=98.91  E-value=1.4e-09  Score=95.38  Aligned_cols=45  Identities=22%  Similarity=0.261  Sum_probs=40.1

Q ss_pred             CCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCC
Q 036363            4 SRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRAS   50 (240)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~   50 (240)
                      ..+++|++|++++|  .+++++|++|+|||||++.|+|...+.+|..
T Consensus       348 ~~vL~~isl~i~~G--~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I  392 (529)
T TIGR02868       348 PPVLDGVSLDLPPG--ERVAILGPSGSGKSTLLMLLTGLLDPLQGEV  392 (529)
T ss_pred             CceeecceEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCcEE
Confidence            45899999999999  9999999999999999999999877666543

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=98.91  E-value=2.6e-09  Score=88.47  Aligned_cols=46  Identities=24%  Similarity=0.331  Sum_probs=40.5

Q ss_pred             CCCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            2 GGSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      |+..++++++|++.+|  ..++|+|+||+|||||+++|+|...+.+|.
T Consensus        17 ~~~~~l~~isl~i~~G--e~~~llGpsGsGKSTLLr~IaGl~~p~~G~   62 (351)
T PRK11432         17 GSNTVIDNLNLTIKQG--TMVTLLGPSGCGKTTVLRLVAGLEKPTEGQ   62 (351)
T ss_pred             CCeEEEeeeEEEEcCC--CEEEEECCCCCcHHHHHHHHHCCCCCCceE
Confidence            3456789999999999  899999999999999999999998776654

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=98.91  E-value=1.4e-09  Score=88.85  Aligned_cols=47  Identities=28%  Similarity=0.264  Sum_probs=42.3

Q ss_pred             CCCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCC
Q 036363            2 GGSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRAS   50 (240)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~   50 (240)
                      |+..+++|++|.+.+|  ..+.|+||+||||||++++|+|...+.+|..
T Consensus        16 g~~~av~~isl~i~~G--ef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I   62 (352)
T COG3842          16 GDFTAVDDISLDIKKG--EFVTLLGPSGCGKTTLLRMIAGFEQPSSGEI   62 (352)
T ss_pred             CCeeEEecceeeecCC--cEEEEECCCCCCHHHHHHHHhCCCCCCCceE
Confidence            4567889999999999  9999999999999999999999988777654

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=98.90  E-value=1.4e-09  Score=82.55  Aligned_cols=46  Identities=24%  Similarity=0.311  Sum_probs=41.2

Q ss_pred             CCCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            2 GGSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      |..+++.+++|.++.|  ..++++|+||+|||||+++|+|...+.++.
T Consensus        14 G~~~~L~gvsl~v~~G--eiv~llG~NGaGKTTlLkti~Gl~~~~~G~   59 (237)
T COG0410          14 GKIQALRGVSLEVERG--EIVALLGRNGAGKTTLLKTIMGLVRPRSGR   59 (237)
T ss_pred             cceeEEeeeeeEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCee
Confidence            5678899999999999  999999999999999999999988765543

>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]

Probab=98.90  E-value=4.2e-08  Score=75.30  Aligned_cols=106  Identities=19%  Similarity=0.221  Sum_probs=75.7

Q ss_pred             ccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC-
Q 036363           10 CELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF-   88 (240)
Q Consensus        10 ~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~-   88 (240)
                      --|.+.....-+|+++|-+.+|||||+..|++...-..+  -..+|.+|......+ ++-.+.++|.||+....+.... 
T Consensus        53 ~GFeV~KsGdaRValIGfPSVGKStlLs~iT~T~SeaA~--yeFTTLtcIpGvi~y-~ga~IQllDLPGIieGAsqgkGR  129 (364)
T KOG1486|consen   53 EGFEVLKSGDARVALIGFPSVGKSTLLSKITSTHSEAAS--YEFTTLTCIPGVIHY-NGANIQLLDLPGIIEGASQGKGR  129 (364)
T ss_pred             CCeeeeccCCeEEEEecCCCccHHHHHHHhhcchhhhhc--eeeeEEEeecceEEe-cCceEEEecCcccccccccCCCC
Confidence            345555555589999999999999999999976432222  234456666555666 8889999999999876654433 


Q ss_pred             --------CCceEEEEEEECCCCCCHHHHHHHHHHHHHhC
Q 036363           89 --------DEIHAALVVFSVRSRFSQEEEATLHSLQTLFG  120 (240)
Q Consensus        89 --------~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~  120 (240)
                              +.+|.++.|+|++  -+...+..++.-.+..|
T Consensus       130 GRQviavArtaDlilMvLDat--k~e~qr~~le~ELe~vG  167 (364)
T KOG1486|consen  130 GRQVIAVARTADLILMVLDAT--KSEDQREILEKELEAVG  167 (364)
T ss_pred             CceEEEEeecccEEEEEecCC--cchhHHHHHHHHHHHhc
Confidence                    8899999999997  23344556665555555

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=98.90  E-value=4.4e-09  Score=87.29  Aligned_cols=46  Identities=24%  Similarity=0.326  Sum_probs=41.3

Q ss_pred             CCCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            2 GGSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      |+..++++++|++.+|  ..++|+|+||+|||||+++|+|...+.+|.
T Consensus         4 ~~~~~l~~vs~~i~~G--ei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~   49 (363)
T TIGR01186         4 GGKKGVNDADLAIAKG--EIFVIMGLSGSGKSTTVRMLNRLIEPTAGQ   49 (363)
T ss_pred             CCceeEEeeEEEEcCC--CEEEEECCCCChHHHHHHHHhCCCCCCceE
Confidence            4567899999999999  999999999999999999999998766653

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=98.90  E-value=2.3e-09  Score=88.90  Aligned_cols=46  Identities=24%  Similarity=0.271  Sum_probs=40.2

Q ss_pred             CCCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            2 GGSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      ++..++++++|++.+|  ..++|+|+||+|||||+++|+|...+.+|.
T Consensus        15 ~~~~~l~~vs~~i~~G--e~~~l~GpsGsGKSTLLr~iaGl~~p~~G~   60 (353)
T TIGR03265        15 GAFTALKDISLSVKKG--EFVCLLGPSGCGKTTLLRIIAGLERQTAGT   60 (353)
T ss_pred             CCeEEEEeeEEEEcCC--CEEEEECCCCCCHHHHHHHHHCCCCCCceE
Confidence            3456789999999999  999999999999999999999987766553

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=98.90  E-value=2.8e-09  Score=88.95  Aligned_cols=45  Identities=31%  Similarity=0.339  Sum_probs=39.8

Q ss_pred             CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      +..++++++|++.+|  ..++|+|+||+|||||+++|+|...+.+|.
T Consensus        15 ~~~vl~~vsl~i~~G--e~~~l~G~nGsGKSTLL~~iaGl~~p~~G~   59 (369)
T PRK11000         15 DVVISKDINLDIHEG--EFVVFVGPSGCGKSTLLRMIAGLEDITSGD   59 (369)
T ss_pred             CeEEEeeeEEEEcCC--CEEEEECCCCCcHHHHHHHHhCCCCCCceE
Confidence            456889999999999  899999999999999999999987665553

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=98.90  E-value=5.8e-09  Score=81.27  Aligned_cols=44  Identities=30%  Similarity=0.283  Sum_probs=39.3

Q ss_pred             CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 036363            3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSR   48 (240)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~   48 (240)
                      ++.++++++|.+.+|  ..++|+|+||+|||||++.|+|...+.+|
T Consensus        12 ~~~~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~~~G   55 (223)
T TIGR03740        12 KQTAVNNISLTVPKN--SVYGLLGPNGAGKSTLLKMITGILRPTSG   55 (223)
T ss_pred             CEEEEeeeEEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence            456889999999999  99999999999999999999998765555

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=98.90  E-value=3.1e-09  Score=83.07  Aligned_cols=43  Identities=28%  Similarity=0.324  Sum_probs=38.7

Q ss_pred             CccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            5 RIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      .++++++|++.+|  ..++|+|+||+|||||+++|+|...+.+|.
T Consensus        24 ~~l~~~s~~i~~G--e~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~   66 (228)
T PRK10584         24 SILTGVELVVKRG--ETIALIGESGSGKSTLLAILAGLDDGSSGE   66 (228)
T ss_pred             EEEeccEEEEcCC--CEEEEECCCCCCHHHHHHHHHcCCCCCCee
Confidence            4899999999999  999999999999999999999987665553

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.90  E-value=4.4e-09  Score=77.21  Aligned_cols=56  Identities=27%  Similarity=0.379  Sum_probs=39.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCC
Q 036363           19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGL   79 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~   79 (240)
                      ..+++++|.+|+|||||+|+|++......+.. .++|......  .  .+..++++||||+
T Consensus       100 ~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~-~~~t~~~~~~--~--~~~~~~liDtPG~  155 (155)
T cd01849         100 SITVGVIGYPNVGKSSVINALLNKLKLKVGNV-PGTTTSQQEV--K--LDNKIKLLDTPGI  155 (155)
T ss_pred             CcEEEEEccCCCCHHHHHHHHHccccccccCC-CCcccceEEE--E--ecCCEEEEECCCC
Confidence            38999999999999999999999764333322 3444444332  2  2346899999996

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>cd01855 YqeH YqeH

Probab=98.90  E-value=3.2e-09  Score=80.65  Aligned_cols=56  Identities=30%  Similarity=0.342  Sum_probs=37.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCcc-------ccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCC
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFK-------SRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGL   79 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~-------~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~   79 (240)
                      .+++++|.+|+|||||+|+|++.....       ......++|........    +..+.++||||+
T Consensus       128 ~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~----~~~~~~~DtPG~  190 (190)
T cd01855         128 GDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPL----GNGKKLYDTPGI  190 (190)
T ss_pred             CcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEec----CCCCEEEeCcCC
Confidence            689999999999999999999864321       11122344444433322    225789999996

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=98.89  E-value=2e-09  Score=90.47  Aligned_cols=45  Identities=27%  Similarity=0.349  Sum_probs=40.2

Q ss_pred             CCCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 036363            2 GGSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSR   48 (240)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~   48 (240)
                      +++.++++++|.+.+|  ..++|+|+||+|||||+++|+|...+.+|
T Consensus        14 ~~~~vL~~vs~~i~~G--eiv~liGpNGaGKSTLLk~LaGll~p~sG   58 (402)
T PRK09536         14 GDTTVLDGVDLSVREG--SLVGLVGPNGAGKTTLLRAINGTLTPTAG   58 (402)
T ss_pred             CCEEEEEeeEEEECCC--CEEEEECCCCchHHHHHHHHhcCCCCCCc
Confidence            3567899999999999  99999999999999999999998766555

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=98.89  E-value=6.8e-09  Score=77.60  Aligned_cols=43  Identities=14%  Similarity=0.110  Sum_probs=35.6

Q ss_pred             CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 036363            3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSR   48 (240)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~   48 (240)
                      +..++.+. +.+++|  ..++|+|+||+|||||++.|+|...+.++
T Consensus        12 ~~~~l~~~-~~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G   54 (177)
T cd03222          12 VFFLLVEL-GVVKEG--EVIGIVGPNGTGKTTAVKILAGQLIPNGD   54 (177)
T ss_pred             CEEEEccC-cEECCC--CEEEEECCCCChHHHHHHHHHcCCCCCCc
Confidence            44556664 888999  99999999999999999999998765544

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=98.89  E-value=4.1e-09  Score=80.19  Aligned_cols=38  Identities=18%  Similarity=0.339  Sum_probs=35.5

Q ss_pred             CCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCC
Q 036363            4 SRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRR   43 (240)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~   43 (240)
                      ..++++++|.+.+|  ..++|+|+||+|||||++.|+|..
T Consensus        20 ~~~l~~vs~~i~~G--e~~~l~G~nGsGKSTLl~~l~G~~   57 (192)
T cd03232          20 RQLLNNISGYVKPG--TLTALMGESGAGKTTLLDVLAGRK   57 (192)
T ss_pred             eEeEEccEEEEeCC--cEEEEECCCCCCHHHHHHHHhCCC
Confidence            46899999999999  999999999999999999999964

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK12288 GTPase RsgA; Reviewed

Probab=98.89  E-value=3.4e-09  Score=87.37  Aligned_cols=60  Identities=27%  Similarity=0.403  Sum_probs=41.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCC------CcceeEEEEEEEEeCCcEEEEEeCCCCCCCC
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSS------GVTSTCEMHRTVLKDGQVVNVIDTPGLFDFS   83 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~------~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~   83 (240)
                      ..++|+|++|+|||||+|+|++.....++..+.      .+|.....+..   .+ ...|+||||+-.+.
T Consensus       206 ki~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l---~~-~~~liDTPGir~~~  271 (347)
T PRK12288        206 RISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHF---PH-GGDLIDSPGVREFG  271 (347)
T ss_pred             CCEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEe---cC-CCEEEECCCCCccc
Confidence            468999999999999999999986655544322      12333333332   21 23599999999874

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.89  E-value=7.5e-09  Score=80.60  Aligned_cols=45  Identities=24%  Similarity=0.238  Sum_probs=40.6

Q ss_pred             CCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCC
Q 036363            4 SRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRAS   50 (240)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~   50 (240)
                      ..+++++++.+.+|  ..++++|+||||||||++.+.|...+.++..
T Consensus        17 ~~~l~~v~~~i~~G--e~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v   61 (235)
T COG1122          17 KAALKDVSLEIEKG--ERVLLIGPNGSGKSTLLKLLNGLLKPTSGEV   61 (235)
T ss_pred             ceeeeeeEEEECCC--CEEEEECCCCCCHHHHHHHHcCcCcCCCCEE
Confidence            47889999999999  9999999999999999999999988776543

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=98.88  E-value=2.6e-09  Score=88.36  Aligned_cols=44  Identities=20%  Similarity=0.176  Sum_probs=39.6

Q ss_pred             CCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            4 SRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      ..++++++|++.+|  ..++|+|+||+|||||+++|+|...+.+|.
T Consensus        18 ~~il~~vsl~i~~G--ei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~   61 (343)
T PRK11153         18 IHALNNVSLHIPAG--EIFGVIGASGAGKSTLIRCINLLERPTSGR   61 (343)
T ss_pred             eEEEEeeEEEEcCC--CEEEEECCCCCcHHHHHHHHhCCCCCCceE
Confidence            46899999999999  999999999999999999999987665553

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=98.88  E-value=4.3e-09  Score=71.86  Aligned_cols=97  Identities=21%  Similarity=0.233  Sum_probs=62.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC------CCceE
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF------DEIHA   93 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~------~~~~~   93 (240)
                      .+|++||+.|+|||||.+++-|.......      |     ..++| ++.  ..+||||-+-....+..      ..+|+
T Consensus         2 Kri~~vG~~gcGKTtL~q~L~G~~~lykK------T-----QAve~-~d~--~~IDTPGEy~~~~~~Y~aL~tt~~dadv   67 (148)
T COG4917           2 KRIAFVGQVGCGKTTLFQSLYGNDTLYKK------T-----QAVEF-NDK--GDIDTPGEYFEHPRWYHALITTLQDADV   67 (148)
T ss_pred             ceeEEecccccCchhHHHHhhcchhhhcc------c-----ceeec-cCc--cccCCchhhhhhhHHHHHHHHHhhccce
Confidence            68999999999999999999987542211      1     12233 222  27899997654444322      78899


Q ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           94 ALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        94 ~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      +++|..++++.+.-.-        .|..-..+++|-|+||.|..+
T Consensus        68 i~~v~~and~~s~f~p--------~f~~~~~k~vIgvVTK~DLae  104 (148)
T COG4917          68 IIYVHAANDPESRFPP--------GFLDIGVKKVIGVVTKADLAE  104 (148)
T ss_pred             eeeeecccCccccCCc--------ccccccccceEEEEecccccc
Confidence            9999888754332211        111222355999999999553

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=98.88  E-value=6.2e-09  Score=81.60  Aligned_cols=44  Identities=25%  Similarity=0.223  Sum_probs=39.6

Q ss_pred             CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 036363            3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSR   48 (240)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~   48 (240)
                      ++.++++++|++.+|  ..++|+|+||+|||||+++|+|...+..|
T Consensus        12 ~~~il~~i~~~i~~G--e~~~i~G~nGsGKSTLl~~l~g~~~~~~G   55 (232)
T cd03300          12 GFVALDGVSLDIKEG--EFFTLLGPSGCGKTTLLRLIAGFETPTSG   55 (232)
T ss_pred             CeeeeccceEEECCC--CEEEEECCCCCCHHHHHHHHhcCCCCCce
Confidence            456899999999999  99999999999999999999998766554

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.87  E-value=2.7e-09  Score=85.87  Aligned_cols=44  Identities=23%  Similarity=0.281  Sum_probs=39.4

Q ss_pred             CCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            4 SRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      +.++++++|++.+|  ..++|+|+||+|||||+++|+|...+.+|.
T Consensus        20 ~~~l~~vsl~i~~G--e~~~i~G~nGaGKSTLl~~i~G~~~p~~G~   63 (279)
T PRK13635         20 TYALKDVSFSVYEG--EWVAIVGHNGSGKSTLAKLLNGLLLPEAGT   63 (279)
T ss_pred             ccceeeeEEEEcCC--CEEEEECCCCCcHHHHHHHHhcCCCCCCcE
Confidence            45899999999999  999999999999999999999997765553

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=98.87  E-value=3.4e-09  Score=87.37  Aligned_cols=44  Identities=18%  Similarity=0.194  Sum_probs=39.7

Q ss_pred             CCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            4 SRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      ..++++++|++.+|  ..++|+|+||||||||+++|+|...+.+|.
T Consensus        18 ~~~L~~vsl~i~~G--ei~gIiG~sGaGKSTLlr~I~gl~~p~~G~   61 (343)
T TIGR02314        18 IQALNNVSLHVPAG--QIYGVIGASGAGKSTLIRCVNLLERPTSGS   61 (343)
T ss_pred             eEEEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCCCceE
Confidence            36899999999999  999999999999999999999988766553

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=98.87  E-value=3.2e-08  Score=79.41  Aligned_cols=127  Identities=16%  Similarity=0.226  Sum_probs=90.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCcc-----------c---c---C--------------CCCCcceeEEEEEEEEeC
Q 036363           19 VRTVVLVGHTGNGKSATGNSILGRRAFK-----------S---R---A--------------SSSGVTSTCEMHRTVLKD   67 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~-----------~---~---~--------------~~~~~t~~~~~~~~~~~~   67 (240)
                      ..+++.+|.-.-||||||-+|+-.....           +   +   .              ...|+|..+.|..+.. .
T Consensus         6 lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT-~   84 (431)
T COG2895           6 LLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST-E   84 (431)
T ss_pred             ceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc-c
Confidence            4899999999999999999987543210           0   0   0              0137888888776666 7


Q ss_pred             CcEEEEEeCCCCCCCCCCCcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCCcccHH
Q 036363           68 GQVVNVIDTPGLFDFSAGSEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEANDETLE  145 (240)
Q Consensus        68 ~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~~~~~~  145 (240)
                      .+.+.+.||||+..+......  ..+|+.++++|+..++..+.++ -..+..++|-   +++++.+||+|++.-+.+.++
T Consensus        85 KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrR-Hs~I~sLLGI---rhvvvAVNKmDLvdy~e~~F~  160 (431)
T COG2895          85 KRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQTRR-HSFIASLLGI---RHVVVAVNKMDLVDYSEEVFE  160 (431)
T ss_pred             cceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhHHHhHH-HHHHHHHhCC---cEEEEEEeeecccccCHHHHH
Confidence            889999999999887544333  8899999999998666555432 2344455554   689999999998766555666


Q ss_pred             HHhcc
Q 036363          146 DYLGR  150 (240)
Q Consensus       146 ~~~~~  150 (240)
                      .....
T Consensus       161 ~I~~d  165 (431)
T COG2895         161 AIVAD  165 (431)
T ss_pred             HHHHH
Confidence            55544

>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]

Probab=98.87  E-value=7.5e-09  Score=90.12  Aligned_cols=117  Identities=26%  Similarity=0.358  Sum_probs=89.6

Q ss_pred             CCCCceEEEEEcCCCCcHHHHHHHHhCCCCcccc--------------CCCCCcceeEEEEEEEEeCCcEEEEEeCCCCC
Q 036363           15 PSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSR--------------ASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLF   80 (240)
Q Consensus        15 ~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~--------------~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~   80 (240)
                      +....++|.++.+-..|||||..+|+......+.              ....|+|......+... .++.++++|+||+.
T Consensus         5 ~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~-~~~~~nlidspghv   83 (887)
T KOG0467|consen    5 GSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLH-KDYLINLIDSPGHV   83 (887)
T ss_pred             CCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeecccccccc-CceEEEEecCCCcc
Confidence            4445689999999999999999999865543221              12335666555555444 78899999999999


Q ss_pred             CCCCCCcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363           81 DFSAGSEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDEL  137 (240)
Q Consensus        81 ~~~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~  137 (240)
                      ||.+....  .-.|++++++|+..+...+....++....    +. ..+++|+||+|.+
T Consensus        84 df~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~----~~-~~~~lvinkidrl  137 (887)
T KOG0467|consen   84 DFSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWI----EG-LKPILVINKIDRL  137 (887)
T ss_pred             chhhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHH----cc-CceEEEEehhhhH
Confidence            99887766  88999999999999999998888886542    11 3479999999954

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=98.87  E-value=4.5e-09  Score=87.69  Aligned_cols=46  Identities=24%  Similarity=0.315  Sum_probs=40.2

Q ss_pred             CCCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            2 GGSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      ++..++++++|++.+|  ..++|+|+||||||||+++|+|...+.+|.
T Consensus        25 ~~~~~l~~vsl~i~~G--e~~~LlGpsGsGKSTLLr~IaGl~~p~~G~   70 (375)
T PRK09452         25 DGKEVISNLDLTINNG--EFLTLLGPSGCGKTTVLRLIAGFETPDSGR   70 (375)
T ss_pred             CCeEEEeeeEEEEeCC--CEEEEECCCCCcHHHHHHHHhCCCCCCceE
Confidence            3456789999999999  899999999999999999999988766553

>cd01899 Ygr210 Ygr210 subfamily

Probab=98.87  E-value=1e-08  Score=83.55  Aligned_cols=78  Identities=19%  Similarity=0.086  Sum_probs=50.8

Q ss_pred             EEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEE---------------------Ee--CCcEEEEEeCCC
Q 036363           22 VVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTV---------------------LK--DGQVVNVIDTPG   78 (240)
Q Consensus        22 i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~---------------------~~--~~~~~~l~DtpG   78 (240)
                      |++||.+++|||||+|+|++.....+..  ..+|.........                     +.  ....+.+|||||
T Consensus         1 i~ivG~pnvGKStLfn~lt~~~~~~~~~--pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aG   78 (318)
T cd01899           1 IGLVGKPNAGKSTFFNAATLADVEIANY--PFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAG   78 (318)
T ss_pred             CEEECCCCCCHHHHHHHHhCCCCcccCC--CCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCC
Confidence            6899999999999999999876422222  2233232222111                     10  124689999999


Q ss_pred             CCCCCCCCcC---------CCceEEEEEEECC
Q 036363           79 LFDFSAGSEF---------DEIHAALVVFSVR  101 (240)
Q Consensus        79 ~~~~~~~~~~---------~~~~~~l~v~~~~  101 (240)
                      +.........         +.+|++++|+++.
T Consensus        79 lv~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~  110 (318)
T cd01899          79 LVPGAHEGKGLGNKFLDDLRDADALIHVVDAS  110 (318)
T ss_pred             CCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence            9644322111         8999999999997

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=98.86  E-value=2.3e-09  Score=81.47  Aligned_cols=45  Identities=22%  Similarity=0.307  Sum_probs=39.9

Q ss_pred             CCCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 036363            2 GGSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSR   48 (240)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~   48 (240)
                      ++..++++++|++.+|  ..++|+|+||+|||||+++|+|...+.+|
T Consensus         3 ~~~~il~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~i~G~~~~~~G   47 (190)
T TIGR01166         3 GGPEVLKGLNFAAERG--EVLALLGANGAGKSTLLLHLNGLLRPQSG   47 (190)
T ss_pred             CccceecceeEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence            3567899999999999  99999999999999999999998765544

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=98.86  E-value=1.9e-08  Score=80.19  Aligned_cols=44  Identities=30%  Similarity=0.246  Sum_probs=39.0

Q ss_pred             CCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            4 SRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      ..++++++|++.+|  ..++|+|+||+|||||+++|+|...+..|.
T Consensus        37 ~~il~~is~~i~~G--e~~~liG~NGsGKSTLlk~L~Gl~~p~~G~   80 (264)
T PRK13546         37 FFALDDISLKAYEG--DVIGLVGINGSGKSTLSNIIGGSLSPTVGK   80 (264)
T ss_pred             eEEEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCcCCCceE
Confidence            45789999999999  999999999999999999999987655543

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=98.86  E-value=4.5e-09  Score=87.33  Aligned_cols=43  Identities=23%  Similarity=0.329  Sum_probs=38.8

Q ss_pred             CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccc
Q 036363            3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKS   47 (240)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~   47 (240)
                      +..++++++|++.+|  ..++|+|+||+|||||+++|+|...+.+
T Consensus        17 ~~~~l~~vsl~i~~G--e~~~llGpsGsGKSTLLr~iaGl~~p~~   59 (362)
T TIGR03258        17 ANTVLDDLSLEIEAG--ELLALIGKSGCGKTTLLRAIAGFVKAAG   59 (362)
T ss_pred             CeEEEeeeEEEECCC--CEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence            446789999999999  8999999999999999999999877655

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=98.86  E-value=4.9e-09  Score=80.72  Aligned_cols=44  Identities=16%  Similarity=0.206  Sum_probs=39.0

Q ss_pred             CCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            4 SRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      ..++++++|.+++|  ..++|+|+||+|||||+++|+|...+.+|.
T Consensus        21 ~~~l~~isl~i~~G--~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~   64 (207)
T cd03369          21 PPVLKNVSFKVKAG--EKIGIVGRTGAGKSTLILALFRFLEAEEGK   64 (207)
T ss_pred             cccccCceEEECCC--CEEEEECCCCCCHHHHHHHHhcccCCCCCe
Confidence            36899999999999  999999999999999999999987655543

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>PRK12289 GTPase RsgA; Reviewed

Probab=98.85  E-value=5e-09  Score=86.38  Aligned_cols=60  Identities=28%  Similarity=0.407  Sum_probs=39.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCC----C--cceeEEEEEEEEeCCcEEEEEeCCCCCCCC
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSS----G--VTSTCEMHRTVLKDGQVVNVIDTPGLFDFS   83 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~----~--~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~   83 (240)
                      ..++|+|++|+|||||+|+|++......+..+.    |  +|.....+  ..+.+  ..|+||||+..+.
T Consensus       173 ki~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~--~l~~g--~~liDTPG~~~~~  238 (352)
T PRK12289        173 KITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELF--ELPNG--GLLADTPGFNQPD  238 (352)
T ss_pred             ceEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEE--ECCCC--cEEEeCCCccccc
Confidence            468999999999999999999876544443221    1  23333322  22122  3799999998764

>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=98.85  E-value=1.6e-09  Score=84.08  Aligned_cols=43  Identities=26%  Similarity=0.267  Sum_probs=39.0

Q ss_pred             ccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCC
Q 036363            6 IDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRAS   50 (240)
Q Consensus         6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~   50 (240)
                      ...|++|.+|+|  .+++++|+|||||||++++|+|...+.+|..
T Consensus        39 AVqdisf~IP~G--~ivgflGaNGAGKSTtLKmLTGll~p~~G~v   81 (325)
T COG4586          39 AVQDISFEIPKG--EIVGFLGANGAGKSTTLKMLTGLLLPTSGKV   81 (325)
T ss_pred             hhheeeeecCCC--cEEEEEcCCCCcchhhHHHHhCccccCCCeE
Confidence            567899999999  9999999999999999999999988777654

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=98.85  E-value=5.6e-09  Score=82.27  Aligned_cols=59  Identities=29%  Similarity=0.341  Sum_probs=40.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCC------CcceeEEEEEEEEeCCcEEEEEeCCCCCCCC
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSS------GVTSTCEMHRTVLKDGQVVNVIDTPGLFDFS   83 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~------~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~   83 (240)
                      ..++++|++|+|||||+|.|++.....++....      .+|........   .  ...++||||+..+.
T Consensus       121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l---~--~~~liDtPG~~~~~  185 (245)
T TIGR00157       121 RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHF---H--GGLIADTPGFNEFG  185 (245)
T ss_pred             CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEc---C--CcEEEeCCCccccC
Confidence            589999999999999999999875544332211      23444433333   2  24799999998874

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=98.84  E-value=3.4e-09  Score=92.44  Aligned_cols=45  Identities=24%  Similarity=0.276  Sum_probs=39.8

Q ss_pred             CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      +..++++++|.+.+|  ..++|+|+||+|||||+++|+|...+.+|.
T Consensus        23 ~~~il~~vsl~i~~G--e~~~liG~NGsGKSTLl~~l~Gl~~p~~G~   67 (510)
T PRK15439         23 GVEVLKGIDFTLHAG--EVHALLGGNGAGKSTLMKIIAGIVPPDSGT   67 (510)
T ss_pred             CceeeeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCceE
Confidence            456899999999999  999999999999999999999987665543

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=98.84  E-value=8.3e-09  Score=81.16  Aligned_cols=44  Identities=32%  Similarity=0.380  Sum_probs=39.0

Q ss_pred             CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 036363            3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSR   48 (240)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~   48 (240)
                      ++.++++++|++.+|  ..++|+|+||+|||||+++|+|...+..|
T Consensus        12 ~~~il~~is~~i~~G--e~~~l~G~nGsGKSTLl~~i~G~~~~~~G   55 (237)
T TIGR00968        12 SFQALDDVNLEVPTG--SLVALLGPSGSGKSTLLRIIAGLEQPDSG   55 (237)
T ss_pred             CeeeeeeEEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCCCce
Confidence            456899999999999  99999999999999999999998655444

>PRK00098 GTPase RsgA; Reviewed

Probab=98.83  E-value=7.7e-09  Score=83.91  Aligned_cols=59  Identities=32%  Similarity=0.395  Sum_probs=40.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCC------CcceeEEEEEEEEeCCcEEEEEeCCCCCCC
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSS------GVTSTCEMHRTVLKDGQVVNVIDTPGLFDF   82 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~------~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~   82 (240)
                      ..++++|++|+|||||+|+|+|.....++....      .+|......  .. . ...+++||||+..+
T Consensus       165 k~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~--~~-~-~~~~~~DtpG~~~~  229 (298)
T PRK00098        165 KVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELY--DL-P-GGGLLIDTPGFSSF  229 (298)
T ss_pred             ceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEE--Ec-C-CCcEEEECCCcCcc
Confidence            689999999999999999999986655543321      123222222  22 2 23589999999875

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=98.83  E-value=7.5e-09  Score=85.84  Aligned_cols=46  Identities=30%  Similarity=0.437  Sum_probs=40.3

Q ss_pred             CCCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            2 GGSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      ++..++++++|++.+|  ..++|+|+||+|||||+++|+|...+.+|.
T Consensus        13 ~~~~~l~~isl~i~~G--e~~~llGpsGsGKSTLLr~IaGl~~p~~G~   58 (353)
T PRK10851         13 GRTQVLNDISLDIPSG--QMVALLGPSGSGKTTLLRIIAGLEHQTSGH   58 (353)
T ss_pred             CCeEEEEEeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCcE
Confidence            3456889999999999  899999999999999999999987666553

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=98.83  E-value=2.8e-08  Score=73.29  Aligned_cols=47  Identities=28%  Similarity=0.352  Sum_probs=41.6

Q ss_pred             CCCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCC
Q 036363            2 GGSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRAS   50 (240)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~   50 (240)
                      +|+.++++++|.+++|  ..+-++||+|||||||++.|++...+..|..
T Consensus        13 ~g~~aL~~vs~~i~~G--ef~fl~GpSGAGKSTllkLi~~~e~pt~G~i   59 (223)
T COG2884          13 GGREALRDVSFHIPKG--EFVFLTGPSGAGKSTLLKLIYGEERPTRGKI   59 (223)
T ss_pred             CCchhhhCceEeecCc--eEEEEECCCCCCHHHHHHHHHhhhcCCCceE
Confidence            4567999999999999  9999999999999999999999887766543

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.83  E-value=1.3e-08  Score=75.52  Aligned_cols=44  Identities=30%  Similarity=0.306  Sum_probs=38.7

Q ss_pred             CCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            4 SRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      +.++.++++++.+|  ..++++||+|||||||+|.+.|...+..+.
T Consensus        18 ~~~le~vsL~ia~g--e~vv~lGpSGcGKTTLLnl~AGf~~P~~G~   61 (259)
T COG4525          18 RSALEDVSLTIASG--ELVVVLGPSGCGKTTLLNLIAGFVTPSRGS   61 (259)
T ss_pred             hhhhhccceeecCC--CEEEEEcCCCccHHHHHHHHhcCcCcccce
Confidence            34889999999999  999999999999999999999987655543

>COG1162 Predicted GTPases [General function prediction only]

Probab=98.83  E-value=5.7e-09  Score=82.87  Aligned_cols=62  Identities=31%  Similarity=0.359  Sum_probs=39.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCC----CCcceeEEEEEEEEeCCcEEEEEeCCCCCCCC
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASS----SGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFS   83 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~   83 (240)
                      ...+++|++|+|||||+|+|.+......+...    .|-.++....-+.+  .....|+||||+..+.
T Consensus       165 ~~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l--~~gG~iiDTPGf~~~~  230 (301)
T COG1162         165 KITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPL--PGGGWIIDTPGFRSLG  230 (301)
T ss_pred             CeEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEc--CCCCEEEeCCCCCccC
Confidence            68999999999999999999986543333221    12112222222222  2345699999999874

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=98.83  E-value=4.7e-07  Score=74.05  Aligned_cols=61  Identities=15%  Similarity=0.126  Sum_probs=37.4

Q ss_pred             CcEEEEEeCCCCCCCCCCCcCCCceEEEEEEECCCCCCHHHHHHHHH-HHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363           68 GQVVNVIDTPGLFDFSAGSEFDEIHAALVVFSVRSRFSQEEEATLHS-LQTLFGKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        68 ~~~~~l~DtpG~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~-l~~~~~~~~~~~~i~v~~~~D~~~~  139 (240)
                      +..+.++||+|....... ....+|.+++|+++.   +..+...+.. +.+.       .-++|+||+|.+..
T Consensus       148 g~d~viieT~Gv~qs~~~-i~~~aD~vlvv~~p~---~gd~iq~~k~gi~E~-------aDIiVVNKaDl~~~  209 (332)
T PRK09435        148 GYDVILVETVGVGQSETA-VAGMVDFFLLLQLPG---AGDELQGIKKGIMEL-------ADLIVINKADGDNK  209 (332)
T ss_pred             CCCEEEEECCCCccchhH-HHHhCCEEEEEecCC---chHHHHHHHhhhhhh-------hheEEeehhcccch
Confidence            467899999999844322 126788989886533   2233322222 2222       13799999997654

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.82  E-value=9.6e-09  Score=82.91  Aligned_cols=60  Identities=37%  Similarity=0.472  Sum_probs=41.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCC----C--cceeEEEEEEEEeCCcEEEEEeCCCCCCCC
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSS----G--VTSTCEMHRTVLKDGQVVNVIDTPGLFDFS   83 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~----~--~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~   83 (240)
                      ..++++|++|+|||||+|+|+|...+.++....    +  +|.....  ..+ . ....++||||+..+.
T Consensus       162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~--~~~-~-~~~~liDtPG~~~~~  227 (287)
T cd01854         162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHREL--FPL-P-GGGLLIDTPGFREFG  227 (287)
T ss_pred             ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEE--EEc-C-CCCEEEECCCCCccC
Confidence            689999999999999999999987655543321    1  2222222  222 2 134799999998763

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=98.82  E-value=3.3e-09  Score=81.96  Aligned_cols=44  Identities=30%  Similarity=0.270  Sum_probs=39.2

Q ss_pred             CCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            4 SRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      ..++++++|++.+|  ..++|+|+||+|||||+++|+|...+.+|.
T Consensus        14 ~~il~~vs~~i~~G--~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~   57 (211)
T cd03225          14 RPALDDISLTIKKG--EFVLIVGPNGSGKSTLLRLLNGLLGPTSGE   57 (211)
T ss_pred             eeeecceEEEEcCC--cEEEEECCCCCCHHHHHHHHhcCCCCCCce
Confidence            56899999999999  999999999999999999999987655543

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=98.82  E-value=4.8e-09  Score=93.15  Aligned_cols=44  Identities=27%  Similarity=0.444  Sum_probs=38.9

Q ss_pred             CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      +..++++++|++++|  .+++|+|++|+|||||++.|+|.. +.+|.
T Consensus       362 ~~~vL~~i~l~i~~G--~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~  405 (588)
T PRK11174        362 GKTLAGPLNFTLPAG--QRIALVGPSGAGKTSLLNALLGFL-PYQGS  405 (588)
T ss_pred             CCeeeeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCC-CCCcE
Confidence            356899999999999  999999999999999999999987 55543

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=98.82  E-value=4.8e-09  Score=78.01  Aligned_cols=79  Identities=14%  Similarity=0.099  Sum_probs=52.3

Q ss_pred             ccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCC
Q 036363            6 IDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAG   85 (240)
Q Consensus         6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~   85 (240)
                      ...|++|.+..|  ..++++|+||+||||+++.|.+...|.++.... ........+..+ ......+.+-.|++...+.
T Consensus        17 AvrdVSF~ae~G--ei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~i-dg~d~~~~p~~v-rr~IGVl~~e~glY~RlT~   92 (245)
T COG4555          17 AVRDVSFEAEEG--EITGLLGENGAGKTTLLRMIATLLIPDSGKVTI-DGVDTVRDPSFV-RRKIGVLFGERGLYARLTA   92 (245)
T ss_pred             hhhheeEEeccc--eEEEEEcCCCCCchhHHHHHHHhccCCCceEEE-eecccccChHHH-hhhcceecCCcChhhhhhH
Confidence            578999999999  999999999999999999999987766654311 111111111111 2223345577777776665


Q ss_pred             CcC
Q 036363           86 SEF   88 (240)
Q Consensus        86 ~~~   88 (240)
                      .++
T Consensus        93 rEn   95 (245)
T COG4555          93 REN   95 (245)
T ss_pred             HHH
Confidence            544

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.82  E-value=1.9e-08  Score=75.60  Aligned_cols=39  Identities=28%  Similarity=0.406  Sum_probs=35.3

Q ss_pred             CCCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCC
Q 036363            2 GGSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGR   42 (240)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~   42 (240)
                      |...++.++++.++.+  ...+++||+|||||||+++|-..
T Consensus        18 g~~~aL~~i~l~i~~~--~VTAlIGPSGcGKST~LR~lNRm   56 (253)
T COG1117          18 GDKHALKDINLDIPKN--KVTALIGPSGCGKSTLLRCLNRM   56 (253)
T ss_pred             CchhhhccCceeccCC--ceEEEECCCCcCHHHHHHHHHhh
Confidence            5678899999999999  99999999999999999988644

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=98.81  E-value=1.2e-08  Score=86.70  Aligned_cols=117  Identities=17%  Similarity=0.172  Sum_probs=79.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCC-cceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEEEE
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSG-VTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAALV   96 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~   96 (240)
                      .+|+|+|.-|+||||||-+++....+..-..... ++.-   ... .+......++||+.-.+.......  +.+|++++
T Consensus        10 VRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IP---adv-tPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~l   85 (625)
T KOG1707|consen   10 VRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIP---ADV-TPENVPTSIVDTSSDSDDRLCLRKEIRKADVICL   85 (625)
T ss_pred             eEEEEECCCCccHHHHHHHHHhhhccccccccCCccccC---Ccc-CcCcCceEEEecccccchhHHHHHHHhhcCEEEE
Confidence            8999999999999999999999876544322111 1111   111 123445789999843332211111  88999999


Q ss_pred             EEECCCCCCHH--HHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCC
Q 036363           97 VFSVRSRFSQE--EEATLHSLQTLFGKNCFDYMIVVFSGRDELEAN  140 (240)
Q Consensus        97 v~~~~~~~~~~--~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~  140 (240)
                      ++..++..+.+  ...+|-.+...+|.....|+|+|.||.|.....
T Consensus        86 vyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~  131 (625)
T KOG1707|consen   86 VYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNE  131 (625)
T ss_pred             EEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCcccc
Confidence            98887433333  467888888888877788999999999976543

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=98.81  E-value=6.8e-09  Score=76.35  Aligned_cols=42  Identities=33%  Similarity=0.341  Sum_probs=37.0

Q ss_pred             CCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccc
Q 036363            4 SRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKS   47 (240)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~   47 (240)
                      ..+++++++.+.+|  ..++|+|+||+|||||+++|+|...+..
T Consensus        12 ~~~l~~~~~~i~~g--~~~~i~G~nGsGKStll~~l~g~~~~~~   53 (157)
T cd00267          12 RTALDNVSLTLKAG--EIVALVGPNGSGKSTLLRAIAGLLKPTS   53 (157)
T ss_pred             eeeEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCc
Confidence            35788999999999  9999999999999999999999865433

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.81  E-value=1.6e-08  Score=81.71  Aligned_cols=60  Identities=25%  Similarity=0.389  Sum_probs=44.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCC
Q 036363           19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFS   83 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~   83 (240)
                      ..+++++|.+|+|||||+|+|++......+. ..+.|...+...    -+..++++||||+....
T Consensus       121 ~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~-~~g~T~~~~~~~----~~~~~~l~DtPGi~~~~  180 (287)
T PRK09563        121 AIRAMIIGIPNVGKSTLINRLAGKKIAKTGN-RPGVTKAQQWIK----LGKGLELLDTPGILWPK  180 (287)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCccccCC-CCCeEEEEEEEE----eCCcEEEEECCCcCCCC
Confidence            3799999999999999999999987544433 345565554322    23468899999997654

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=98.81  E-value=3.8e-09  Score=81.69  Aligned_cols=43  Identities=14%  Similarity=0.201  Sum_probs=38.5

Q ss_pred             CccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            5 RIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      .++++++|.+++|  ..++|+|+||+|||||++.|+|...+.+|.
T Consensus         1 ~vl~~vs~~i~~G--e~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~   43 (213)
T PRK15177          1 VVLDKTDFVMGYH--EHIGILAAPGSGKTTLTRLLCGLDAPDEGD   43 (213)
T ss_pred             CeeeeeeEEEcCC--CEEEEECCCCCCHHHHHHHHhCCccCCCCC
Confidence            3688999999999  999999999999999999999987665554

>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]

Probab=98.81  E-value=1.3e-07  Score=66.96  Aligned_cols=120  Identities=18%  Similarity=0.068  Sum_probs=75.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEE-EEEEEeC--CcEEEEEeCCCCCCCCCCCcC---CCce
Q 036363           19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM-HRTVLKD--GQVVNVIDTPGLFDFSAGSEF---DEIH   92 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~l~DtpG~~~~~~~~~~---~~~~   92 (240)
                      .-+|+++|.-++|||+++..++-..-.....  ...|....| .+++.+.  ...+.+.||.|+.+.......   .-+|
T Consensus         9 ~~kVvVcG~k~VGKTaileQl~yg~~~~~~e--~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aD   86 (198)
T KOG3883|consen    9 VCKVVVCGMKSVGKTAILEQLLYGNHVPGTE--LHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFAD   86 (198)
T ss_pred             ceEEEEECCccccHHHHHHHHHhccCCCCCc--cccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCc
Confidence            3799999999999999998876443222211  111222221 2222211  236889999999887333222   8899


Q ss_pred             EEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCC
Q 036363           93 AALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEAN  140 (240)
Q Consensus        93 ~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~  140 (240)
                      ++++|++..+.-|.+-...++.-...+....-.|++++.|+.|...+.
T Consensus        87 afVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~  134 (198)
T KOG3883|consen   87 AFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPR  134 (198)
T ss_pred             eEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccch
Confidence            999999887655555545544444443344446789999999976543

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.81  E-value=3.9e-09  Score=80.37  Aligned_cols=45  Identities=29%  Similarity=0.364  Sum_probs=40.4

Q ss_pred             CCCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 036363            2 GGSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSR   48 (240)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~   48 (240)
                      |+..++++++|.++.|  ..|+|||++|+|||||+++|.|...+.++
T Consensus        15 ~~~~aL~~Vnl~I~~G--E~VaiIG~SGaGKSTLLR~lngl~d~t~G   59 (258)
T COG3638          15 GGHQALKDVNLEINQG--EMVAIIGPSGAGKSTLLRSLNGLVDPTSG   59 (258)
T ss_pred             CCceeeeeEeEEeCCC--cEEEEECCCCCcHHHHHHHHhcccCCCcc
Confidence            5778999999999999  99999999999999999999997655554

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=98.81  E-value=7.8e-09  Score=86.82  Aligned_cols=44  Identities=20%  Similarity=0.145  Sum_probs=39.0

Q ss_pred             CCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            4 SRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      ..++++++|++++|  ..++|+|+||+|||||+++|+|...+.+|.
T Consensus        41 ~~~L~~isl~i~~G--ei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~   84 (400)
T PRK10070         41 SLGVKDASLAIEEG--EIFVIMGLSGSGKSTMVRLLNRLIEPTRGQ   84 (400)
T ss_pred             eEEEEeEEEEEcCC--CEEEEECCCCchHHHHHHHHHcCCCCCCCE
Confidence            34689999999999  999999999999999999999987766553

>cd01856 YlqF YlqF

Probab=98.81  E-value=1.9e-08  Score=75.10  Aligned_cols=56  Identities=27%  Similarity=0.443  Sum_probs=40.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCC
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLF   80 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~   80 (240)
                      .+++++|.+|+|||||+|.|++......+ ...++|.......  . . ..+.++||||+.
T Consensus       116 ~~~~~~G~~~vGKstlin~l~~~~~~~~~-~~~~~T~~~~~~~--~-~-~~~~~iDtpG~~  171 (171)
T cd01856         116 IRAMVVGIPNVGKSTLINRLRGKKVAKVG-NKPGVTKGIQWIK--I-S-PGIYLLDTPGIL  171 (171)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCCceeec-CCCCEEeeeEEEE--e-c-CCEEEEECCCCC
Confidence            79999999999999999999987653222 2234555444332  2 2 567899999974

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=98.80  E-value=3.5e-09  Score=81.46  Aligned_cols=44  Identities=32%  Similarity=0.342  Sum_probs=39.3

Q ss_pred             CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 036363            3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSR   48 (240)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~   48 (240)
                      ++.++++++|.+.+|  ..++|+|+||+|||||++.|+|...+.+|
T Consensus        10 ~~~~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~~~G   53 (206)
T TIGR03608        10 DKIILDDLNLTIEKG--KMYAIIGESGSGKSTLLNIIGLLEKFDSG   53 (206)
T ss_pred             CEEEEeceEEEEeCC--cEEEEECCCCCCHHHHHHHHhcCCCCCCe
Confidence            456899999999999  99999999999999999999998765554

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=98.80  E-value=4.1e-09  Score=81.04  Aligned_cols=44  Identities=25%  Similarity=0.328  Sum_probs=39.4

Q ss_pred             CCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            4 SRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      ..++++++|++.+|  ..++|+|+||+|||||++.|+|...+.+|.
T Consensus        13 ~~~l~~v~~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~   56 (205)
T cd03226          13 TEILDDLSLDLYAG--EIIALTGKNGAGKTTLAKILAGLIKESSGS   56 (205)
T ss_pred             CceeeeeeEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCCCceE
Confidence            56899999999999  999999999999999999999987655543

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=98.80  E-value=9.7e-09  Score=85.84  Aligned_cols=45  Identities=27%  Similarity=0.302  Sum_probs=39.5

Q ss_pred             CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      +..++++++|.+.+|  ..++|+|+||+|||||+++|+|...+.+|.
T Consensus        31 ~~~~l~~vsl~i~~G--e~~~llGpsGsGKSTLLr~IaGl~~p~~G~   75 (377)
T PRK11607         31 GQHAVDDVSLTIYKG--EIFALLGASGCGKSTLLRMLAGFEQPTAGQ   75 (377)
T ss_pred             CEEEEeeeEEEEcCC--CEEEEECCCCCcHHHHHHHHhCCCCCCceE
Confidence            345788999999999  899999999999999999999998766553

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=98.80  E-value=3e-09  Score=83.92  Aligned_cols=44  Identities=23%  Similarity=0.259  Sum_probs=39.1

Q ss_pred             CCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            4 SRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      ..++++++|.+.+|  ..++|+|+||+|||||+++|+|...+.+|.
T Consensus        14 ~~~l~~is~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~   57 (242)
T cd03295          14 KKAVNNLNLEIAKG--EFLVLIGPSGSGKTTTMKMINRLIEPTSGE   57 (242)
T ss_pred             ceEeeeeEEEECCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCce
Confidence            56899999999999  999999999999999999999987655543

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=98.80  E-value=5.8e-09  Score=92.61  Aligned_cols=44  Identities=27%  Similarity=0.261  Sum_probs=39.7

Q ss_pred             CCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            4 SRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      ..+++++++.+++|  .+++|+|++|+|||||++.|+|...+.+|.
T Consensus       348 ~~iL~~inl~i~~G--~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~  391 (588)
T PRK13657        348 RQGVEDVSFEAKPG--QTVAIVGPTGAGKSTLINLLQRVFDPQSGR  391 (588)
T ss_pred             CceecceeEEECCC--CEEEEECCCCCCHHHHHHHHhcCcCCCCCE
Confidence            45899999999999  999999999999999999999987766554

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=98.80  E-value=1.5e-08  Score=78.23  Aligned_cols=38  Identities=32%  Similarity=0.371  Sum_probs=34.8

Q ss_pred             CccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 036363            9 DCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSR   48 (240)
Q Consensus         9 ~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~   48 (240)
                      +++|++.+|  ..++|+|+||+|||||+++|+|...+.+|
T Consensus        16 ~is~~i~~G--e~~~l~G~nGsGKSTLl~~l~gl~~~~~G   53 (211)
T cd03298          16 HFDLTFAQG--EITAIVGPSGSGKSTLLNLIAGFETPQSG   53 (211)
T ss_pred             ceEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            899999999  99999999999999999999998766554

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=98.80  E-value=4.5e-09  Score=81.98  Aligned_cols=44  Identities=16%  Similarity=0.188  Sum_probs=39.5

Q ss_pred             CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 036363            3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSR   48 (240)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~   48 (240)
                      +..++++++|++++|  ..++|+|+||+|||||++.|+|...+.+|
T Consensus        19 ~~~il~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~~~G   62 (225)
T PRK10247         19 DAKILNNISFSLRAG--EFKLITGPSGCGKSTLLKIVASLISPTSG   62 (225)
T ss_pred             CceeeeccEEEEcCC--CEEEEECCCCCCHHHHHHHHhcccCCCCC
Confidence            456899999999999  99999999999999999999998765554

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=98.79  E-value=3.1e-08  Score=82.36  Aligned_cols=118  Identities=25%  Similarity=0.296  Sum_probs=80.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCCcccc-------------CCCCCcceeEEEEEEEEe----CCcEEEEEeCCCC
Q 036363           17 NGVRTVVLVGHTGNGKSATGNSILGRRAFKSR-------------ASSSGVTSTCEMHRTVLK----DGQVVNVIDTPGL   79 (240)
Q Consensus        17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~-------------~~~~~~t~~~~~~~~~~~----~~~~~~l~DtpG~   79 (240)
                      ...++..+|.+...|||||..+|+.....-+.             ....|.|...+.....+.    ....++++||||+
T Consensus         7 ~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGH   86 (603)
T COG0481           7 KNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGH   86 (603)
T ss_pred             hhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCc
Confidence            35589999999999999999998754321110             012466766665555542    2357899999999


Q ss_pred             CCCCCCCcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363           80 FDFSAGSEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        80 ~~~~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~  139 (240)
                      .||.-....  ..+.+.++|+|++.+...+.....-...   ..+  --++.|+||.|+-..
T Consensus        87 VDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAl---e~~--LeIiPViNKIDLP~A  143 (603)
T COG0481          87 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL---ENN--LEIIPVLNKIDLPAA  143 (603)
T ss_pred             cceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHH---HcC--cEEEEeeecccCCCC
Confidence            999755444  7788899999999777666544333332   221  348999999995444

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=98.79  E-value=4.2e-09  Score=81.47  Aligned_cols=45  Identities=27%  Similarity=0.365  Sum_probs=39.5

Q ss_pred             CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      +..++++++|++.+|  ..++|+|+||+|||||++.|+|...+.+|.
T Consensus        11 ~~~~l~~isl~i~~G--e~~~l~G~nGsGKSTLl~~l~G~~~p~~G~   55 (213)
T cd03235          11 GHPVLEDVSFEVKPG--EFLAIVGPNGAGKSTLLKAILGLLKPTSGS   55 (213)
T ss_pred             CEEeeecceeEEcCC--CEEEEECCCCCCHHHHHHHHcCCCCCCCCE
Confidence            346899999999999  999999999999999999999987655543

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=98.79  E-value=1.6e-08  Score=79.26  Aligned_cols=136  Identities=17%  Similarity=0.245  Sum_probs=90.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccc--------------cCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCC
Q 036363           18 GVRTVVLVGHTGNGKSATGNSILGRRAFKS--------------RASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFS   83 (240)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~--------------~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~   83 (240)
                      +..+|+.||+-..|||||..+|++......              .....|.|.......++. .++.+.-+|+||+-|+-
T Consensus        11 phVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet-~~rhyahVDcPGHaDYv   89 (394)
T COG0050          11 PHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYET-ANRHYAHVDCPGHADYV   89 (394)
T ss_pred             CeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEec-CCceEEeccCCChHHHH
Confidence            458999999999999999999875322000              011235666665555555 67788899999999875


Q ss_pred             CCCcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCCcccHHHHhcccCCchHHHHHH
Q 036363           84 AGSEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEANDETLEDYLGRECPKPLKEILH  161 (240)
Q Consensus        84 ~~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (240)
                      .....  .+.|+.|+|+.++++.-++.++-+-.. ...|   .+++++++||+|.+.+.  .+-+.+..    .+++++.
T Consensus        90 KNMItgAaqmDgAILVVsA~dGpmPqTrEHiLla-rqvG---vp~ivvflnK~Dmvdd~--ellelVem----EvreLLs  159 (394)
T COG0050          90 KNMITGAAQMDGAILVVAATDGPMPQTREHILLA-RQVG---VPYIVVFLNKVDMVDDE--ELLELVEM----EVRELLS  159 (394)
T ss_pred             HHHhhhHHhcCccEEEEEcCCCCCCcchhhhhhh-hhcC---CcEEEEEEecccccCcH--HHHHHHHH----HHHHHHH
Confidence            43322  678899999999877767665443322 2333   37789999999977642  33333332    3566666


Q ss_pred             HhC
Q 036363          162 LFD  164 (240)
Q Consensus       162 ~~~  164 (240)
                      .++
T Consensus       160 ~y~  162 (394)
T COG0050         160 EYG  162 (394)
T ss_pred             HcC
Confidence            644

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=98.79  E-value=2.1e-08  Score=77.53  Aligned_cols=41  Identities=27%  Similarity=0.317  Sum_probs=36.7

Q ss_pred             ccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 036363            6 IDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSR   48 (240)
Q Consensus         6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~   48 (240)
                      .+.+++|.+.+|  ..++|+|+||+|||||+++|+|...+.+|
T Consensus        13 ~~~~~s~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~~~G   53 (213)
T TIGR01277        13 LPMEFDLNVADG--EIVAIMGPSGAGKSTLLNLIAGFIEPASG   53 (213)
T ss_pred             cceeeEEEEeCC--cEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence            356899999999  99999999999999999999998766555

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>KOG0410 consensus Predicted GTP binding protein [General function prediction only]

Probab=98.79  E-value=6.8e-09  Score=82.29  Aligned_cols=117  Identities=21%  Similarity=0.166  Sum_probs=83.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC----------
Q 036363           19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF----------   88 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~----------   88 (240)
                      ...|++||-++||||||++.|++....+...  ...|-.........+.+..+.+.||-||.+.....-.          
T Consensus       178 ~pviavVGYTNaGKsTLikaLT~Aal~p~dr--LFATLDpT~h~a~Lpsg~~vlltDTvGFisdLP~~LvaAF~ATLeeV  255 (410)
T KOG0410|consen  178 SPVIAVVGYTNAGKSTLIKALTKAALYPNDR--LFATLDPTLHSAHLPSGNFVLLTDTVGFISDLPIQLVAAFQATLEEV  255 (410)
T ss_pred             CceEEEEeecCccHHHHHHHHHhhhcCccch--hheeccchhhhccCCCCcEEEEeechhhhhhCcHHHHHHHHHHHHHH
Confidence            3799999999999999999999766544432  3344444555555667888899999999876554322          


Q ss_pred             CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCC---CcCCeEEEEEeCCCCC
Q 036363           89 DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGK---NCFDYMIVVFSGRDEL  137 (240)
Q Consensus        89 ~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~---~~~~~~i~v~~~~D~~  137 (240)
                      ..+|.++-|+|++++.-...+.........+|-   ....+++-|-||.|.-
T Consensus       256 aeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e  307 (410)
T KOG0410|consen  256 AEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYE  307 (410)
T ss_pred             hhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccc
Confidence            888999999999977766666555555555552   1234567778888854

>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.79  E-value=6e-08  Score=71.09  Aligned_cols=115  Identities=22%  Similarity=0.138  Sum_probs=79.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363           18 GVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAAL   95 (240)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l   95 (240)
                      ...+++++|..|.||||+.++.+-..+-.....+.+............ +...+.+|||.|..-+......  -...+.+
T Consensus         9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~-g~irf~~wdtagqEk~gglrdgyyI~~qcAi   87 (216)
T KOG0096|consen    9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNR-GQIRFNVWDTAGQEKKGGLRDGYYIQGQCAI   87 (216)
T ss_pred             ceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeeccc-CcEEEEeeecccceeecccccccEEecceeE
Confidence            358999999999999999998876554333333233222222121111 2357889999999988776665  6667788


Q ss_pred             EEEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCC
Q 036363           96 VVFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDE  136 (240)
Q Consensus        96 ~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~  136 (240)
                      ++++++.+++.... .+-+.+...++.   .|+++..||.|.
T Consensus        88 imFdVtsr~t~~n~~rwhrd~~rv~~N---iPiv~cGNKvDi  126 (216)
T KOG0096|consen   88 IMFDVTSRFTYKNVPRWHRDLVRVREN---IPIVLCGNKVDI  126 (216)
T ss_pred             EEeeeeehhhhhcchHHHHHHHHHhcC---CCeeeeccceec
Confidence            88999888887764 455566666554   579999999993

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.79  E-value=3.3e-09  Score=83.66  Aligned_cols=45  Identities=22%  Similarity=0.189  Sum_probs=39.7

Q ss_pred             CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      +..++++++|++.+|  ..++|+|+||+|||||++.|+|...+.+|.
T Consensus        15 ~~~~l~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~   59 (241)
T PRK14250         15 GKEILKDISVKFEGG--AIYTIVGPSGAGKSTLIKLINRLIDPTEGS   59 (241)
T ss_pred             CeeeeeeeeEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCcE
Confidence            456889999999999  899999999999999999999987655553

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=98.78  E-value=5.5e-09  Score=92.71  Aligned_cols=45  Identities=24%  Similarity=0.335  Sum_probs=40.4

Q ss_pred             CCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCC
Q 036363            4 SRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRAS   50 (240)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~   50 (240)
                      +.+++++++++++|  .+++|+|++|+|||||++.|+|...+.+|..
T Consensus       356 ~~il~~i~l~i~~G--~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I  400 (582)
T PRK11176        356 VPALRNINFKIPAG--KTVALVGRSGSGKSTIANLLTRFYDIDEGEI  400 (582)
T ss_pred             CccccCceEEeCCC--CEEEEECCCCCCHHHHHHHHHhccCCCCceE
Confidence            56899999999999  9999999999999999999999887766543

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=98.78  E-value=6.1e-09  Score=82.23  Aligned_cols=44  Identities=23%  Similarity=0.229  Sum_probs=39.4

Q ss_pred             CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 036363            3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSR   48 (240)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~   48 (240)
                      +..++++++|++.+|  ..++|+|+||+|||||+++|+|...+.+|
T Consensus        14 ~~~il~~vs~~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G   57 (243)
T TIGR02315        14 GKQALKNINLNINPG--EFVAIIGPSGAGKSTLLRCINRLVEPSSG   57 (243)
T ss_pred             CcceeecceEEEcCC--CEEEEECCCCCCHHHHHHHHhCCcCCCcc
Confidence            456899999999999  99999999999999999999998765554

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2

Probab=98.78  E-value=7.4e-09  Score=82.96  Aligned_cols=40  Identities=25%  Similarity=0.380  Sum_probs=37.1

Q ss_pred             CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCC
Q 036363            3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRA   44 (240)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~   44 (240)
                      +..++++++|.+.+|  .+++|+|+||+|||||+++|+|...
T Consensus        16 ~~~~l~~isl~I~~G--e~~~IvG~nGsGKSTLl~~L~gl~~   55 (275)
T cd03289          16 GNAVLENISFSISPG--QRVGLLGRTGSGKSTLLSAFLRLLN   55 (275)
T ss_pred             CCcceeceEEEEcCC--CEEEEECCCCCCHHHHHHHHhhhcC
Confidence            356899999999999  9999999999999999999999865

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=98.78  E-value=6.9e-09  Score=76.00  Aligned_cols=39  Identities=33%  Similarity=0.417  Sum_probs=34.0

Q ss_pred             ccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCC
Q 036363           10 CELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRAS   50 (240)
Q Consensus        10 ~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~   50 (240)
                      ++++++.+  .+++|+|++|+|||||+|.|.|...+.++..
T Consensus        18 fdl~v~~g--e~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i   56 (231)
T COG3840          18 FDLTVPAG--EIVAILGPSGAGKSTLLNLIAGFETPASGEI   56 (231)
T ss_pred             EEEeecCC--cEEEEECCCCccHHHHHHHHHhccCCCCceE
Confidence            56788889  9999999999999999999999887766543

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=98.77  E-value=4.9e-09  Score=82.54  Aligned_cols=44  Identities=32%  Similarity=0.340  Sum_probs=39.4

Q ss_pred             CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 036363            3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSR   48 (240)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~   48 (240)
                      ++.++++++|++.+|  ..++|+|+||+|||||+++|+|...+.+|
T Consensus        14 ~~~il~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G   57 (239)
T cd03296          14 DFVALDDVSLDIPSG--ELVALLGPSGSGKTTLLRLIAGLERPDSG   57 (239)
T ss_pred             CEEeeeeeeEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence            456899999999999  99999999999999999999998765554

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=98.77  E-value=1.2e-08  Score=89.43  Aligned_cols=45  Identities=16%  Similarity=0.281  Sum_probs=39.7

Q ss_pred             CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      ++.++++++|.+.+|  ..++|+|+||+|||||++.|+|...+.+|.
T Consensus       331 ~~~~l~~is~~i~~G--e~~~l~G~NGsGKSTLl~~i~G~~~p~~G~  375 (530)
T PRK15064        331 NGPLFKNLNLLLEAG--ERLAIIGENGVGKTTLLRTLVGELEPDSGT  375 (530)
T ss_pred             CceeecCcEEEECCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCeE
Confidence            456899999999999  999999999999999999999987655543

>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.77  E-value=1.5e-08  Score=75.71  Aligned_cols=113  Identities=16%  Similarity=0.152  Sum_probs=70.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC-----CCceEE
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF-----DEIHAA   94 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~-----~~~~~~   94 (240)
                      ..|.++|++++|||+|+-.|.......+..     ........... +.....++|.||+......-..     ..+-++
T Consensus        39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~~Tvt-----Siepn~a~~r~-gs~~~~LVD~PGH~rlR~kl~e~~~~~~~akai  112 (238)
T KOG0090|consen   39 NAVLLVGLSDSGKTSLFTQLITGSHRGTVT-----SIEPNEATYRL-GSENVTLVDLPGHSRLRRKLLEYLKHNYSAKAI  112 (238)
T ss_pred             CcEEEEecCCCCceeeeeehhcCCccCeee-----eeccceeeEee-cCcceEEEeCCCcHHHHHHHHHHccccccceeE
Confidence            689999999999999998776543211111     11111122222 5556799999999864322111     477889


Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHHh----CCCcCCeEEEEEeCCCCCCC
Q 036363           95 LVVFSVRSRFSQEEEATLHSLQTLF----GKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        95 l~v~~~~~~~~~~~~~~l~~l~~~~----~~~~~~~~i~v~~~~D~~~~  139 (240)
                      +||+|.. -+...-+..-+.+...+    +....+|+++..||-|.+..
T Consensus       113 VFVVDSa-~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tA  160 (238)
T KOG0090|consen  113 VFVVDSA-TFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTA  160 (238)
T ss_pred             EEEEecc-ccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhc
Confidence            9999987 44444444444433332    23445789999999997754

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=98.76  E-value=6.1e-09  Score=81.86  Aligned_cols=44  Identities=27%  Similarity=0.234  Sum_probs=38.9

Q ss_pred             CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 036363            3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSR   48 (240)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~   48 (240)
                      +..++++++|++.+|  ..++|+|+||+|||||+++|+|...+.+|
T Consensus        12 ~~~~l~~vsl~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G   55 (236)
T cd03219          12 GLVALDDVSFSVRPG--EIHGLIGPNGAGKTTLFNLISGFLRPTSG   55 (236)
T ss_pred             CEEEecCceEEecCC--cEEEEECCCCCCHHHHHHHHcCCCCCCCc
Confidence            345889999999999  99999999999999999999998765554

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.76  E-value=5.9e-09  Score=79.84  Aligned_cols=45  Identities=18%  Similarity=0.191  Sum_probs=40.0

Q ss_pred             CCCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 036363            2 GGSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSR   48 (240)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~   48 (240)
                      ++..++++++|++.+|  ..++|+|+||+|||||+++|+|...+.+|
T Consensus        12 ~~~~il~~~s~~i~~G--e~~~l~G~nGsGKSTLl~~i~G~~~~~~G   56 (200)
T PRK13540         12 HDQPLLQQISFHLPAG--GLLHLKGSNGAGKTTLLKLIAGLLNPEKG   56 (200)
T ss_pred             CCeeEEeeeeEEECCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCe
Confidence            3457899999999999  99999999999999999999998766554

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=98.76  E-value=8.2e-09  Score=91.76  Aligned_cols=44  Identities=32%  Similarity=0.504  Sum_probs=39.7

Q ss_pred             CCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            4 SRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      ..++++++|++++|  .+++++|++|+|||||++.|+|...+.+|.
T Consensus       354 ~~il~~i~l~i~~G--e~iaIvG~SGsGKSTLl~lL~gl~~p~~G~  397 (592)
T PRK10790        354 NLVLQNINLSVPSR--GFVALVGHTGSGKSTLASLLMGYYPLTEGE  397 (592)
T ss_pred             CceeeceeEEEcCC--CEEEEECCCCCCHHHHHHHHhcccCCCCce
Confidence            46899999999999  999999999999999999999987766554

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.76  E-value=1.9e-08  Score=80.77  Aligned_cols=59  Identities=27%  Similarity=0.374  Sum_probs=42.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCC
Q 036363           19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDF   82 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~   82 (240)
                      ..+++++|.+|+|||||+|+|++......+.. .+.|...+...  .  +..+.++||||+...
T Consensus       118 ~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~-~g~T~~~~~~~--~--~~~~~l~DtPG~~~~  176 (276)
T TIGR03596       118 PIRAMIVGIPNVGKSTLINRLAGKKVAKVGNR-PGVTKGQQWIK--L--SDGLELLDTPGILWP  176 (276)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhCCCccccCCC-CCeecceEEEE--e--CCCEEEEECCCcccC
Confidence            37899999999999999999998765444433 45555544322  2  336789999999654

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=98.76  E-value=1.3e-08  Score=84.95  Aligned_cols=46  Identities=22%  Similarity=0.242  Sum_probs=40.5

Q ss_pred             CCCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            2 GGSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      |...++++++|++.+|  ..++|+|+||+|||||+++|+|...+.+|.
T Consensus        35 g~~~~l~~vsf~i~~G--ei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~   80 (382)
T TIGR03415        35 GLVVGVANASLDIEEG--EICVLMGLSGSGKSSLLRAVNGLNPVSRGS   80 (382)
T ss_pred             CCEEEEEeeEEEEcCC--CEEEEECCCCCcHHHHHHHHhCCCCCCCcE
Confidence            4556789999999999  999999999999999999999987766553

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=98.76  E-value=7.4e-09  Score=81.20  Aligned_cols=43  Identities=26%  Similarity=0.323  Sum_probs=39.0

Q ss_pred             CccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            5 RIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      .++++++|++.+|  ..++|+|+||+|||||+++|+|...+.+|.
T Consensus        19 ~il~~~s~~i~~G--e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~   61 (233)
T cd03258          19 TALKDVSLSVPKG--EIFGIIGRSGAGKSTLIRCINGLERPTSGS   61 (233)
T ss_pred             eeeecceEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCce
Confidence            6899999999999  999999999999999999999987665543

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.76  E-value=4.8e-09  Score=87.26  Aligned_cols=109  Identities=19%  Similarity=0.174  Sum_probs=61.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCcc----ccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC-------
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFK----SRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF-------   88 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~----~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~-------   88 (240)
                      ..+++||.+|+|||||+|+|++.....    ......++|......  ..  +..+.++||||+.........       
T Consensus       155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~--~~--~~~~~l~DtPG~~~~~~~~~~l~~~~l~  230 (360)
T TIGR03597       155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEI--PL--DDGHSLYDTPGIINSHQMAHYLDKKDLK  230 (360)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEE--Ee--CCCCEEEECCCCCChhHhhhhcCHHHHh
Confidence            689999999999999999999854311    122224445444322  22  234679999999865422111       


Q ss_pred             -----CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363           89 -----DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDEL  137 (240)
Q Consensus        89 -----~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~  137 (240)
                           .......|.++....+..+....+..+.    . ....+.+.+++.+.+
T Consensus       231 ~~~~~~~i~~~~~~l~~~q~~~~ggl~~~d~~~----~-~~~~~~~~~~~~~~~  279 (360)
T TIGR03597       231 YITPKKEIKPKTYQLNPNQTLFLGGLARFDYLK----G-EKTSFTFYVSNELNI  279 (360)
T ss_pred             hcCCCCccCceEEEeCCCCEEEEceEEEEEEec----C-CceEEEEEccCCcee
Confidence                 4455666666655433333333333332    1 123355556665544

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]

Probab=98.76  E-value=8.1e-10  Score=76.08  Aligned_cols=113  Identities=14%  Similarity=0.166  Sum_probs=73.5

Q ss_pred             EEEcCCCCcHHHHHHHHhCCCCcccc-CCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEEEEEEE
Q 036363           23 VLVGHTGNGKSATGNSILGRRAFKSR-ASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAALVVFS   99 (240)
Q Consensus        23 ~lvG~~g~GKSTlin~l~g~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~v~~   99 (240)
                      +++|.+++|||-|+-.+-...+.... .+..|+..........- ....+.+|||.|+..|.+....  +.+|++++++|
T Consensus         1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~-~kvklqiwdtagqerfrsvt~ayyrda~allllyd   79 (192)
T KOG0083|consen    1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDD-KKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYD   79 (192)
T ss_pred             CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCC-cEEEEEEeeccchHHHhhhhHhhhcccceeeeeee
Confidence            47899999999887554332221111 11122222222111111 2346789999999999887766  99999999999


Q ss_pred             CCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363          100 VRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus       100 ~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      +.++.|.+. ..++..+.+.-.. . ..++++.||+|...
T Consensus        80 iankasfdn~~~wlsei~ey~k~-~-v~l~llgnk~d~a~  117 (192)
T KOG0083|consen   80 IANKASFDNCQAWLSEIHEYAKE-A-VALMLLGNKCDLAH  117 (192)
T ss_pred             cccchhHHHHHHHHHHHHHHHHh-h-HhHhhhccccccch
Confidence            999999887 5666666655322 2 45789999999543

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=98.76  E-value=1.1e-08  Score=89.77  Aligned_cols=43  Identities=30%  Similarity=0.334  Sum_probs=39.2

Q ss_pred             CccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            5 RIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      .+++++++.+++|  .+++++|++|+|||||++.|+|...+.+|.
T Consensus       336 ~il~~i~l~i~~G--~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~  378 (529)
T TIGR02857       336 PALRPVSFTVPPG--ERVALVGPSGAGKSTLLNLLLGFVDPTEGS  378 (529)
T ss_pred             ccccceeEEECCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCcE
Confidence            5899999999999  999999999999999999999987766554

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=98.76  E-value=6.7e-09  Score=80.38  Aligned_cols=43  Identities=26%  Similarity=0.258  Sum_probs=38.7

Q ss_pred             CCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 036363            4 SRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSR   48 (240)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~   48 (240)
                      +.++++++|++.+|  ..++|+|+||+|||||++.|+|...+.+|
T Consensus        14 ~~~l~~~sl~i~~G--~~~~i~G~nGsGKSTLl~~l~G~~~~~~G   56 (214)
T cd03292          14 TAALDGINISISAG--EFVFLVGPSGAGKSTLLKLIYKEELPTSG   56 (214)
T ss_pred             ceeeeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCCCce
Confidence            46899999999999  99999999999999999999998765544

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.76  E-value=6.6e-09  Score=80.01  Aligned_cols=44  Identities=23%  Similarity=0.271  Sum_probs=39.1

Q ss_pred             CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 036363            3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSR   48 (240)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~   48 (240)
                      +..++++++|.+.+|  ..++|+|+||+|||||++.|+|...+.+|
T Consensus        14 ~~~~l~~is~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~~~G   57 (207)
T PRK13539         14 GRVLFSGLSFTLAAG--EALVLTGPNGSGKTTLLRLIAGLLPPAAG   57 (207)
T ss_pred             CeEEEeceEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            346889999999999  99999999999999999999998765554

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=98.76  E-value=5.8e-09  Score=81.49  Aligned_cols=39  Identities=23%  Similarity=0.270  Sum_probs=36.5

Q ss_pred             CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCC
Q 036363            3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRR   43 (240)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~   43 (240)
                      +..++++++|++.+|  ..++|+|+||+|||||+++|+|..
T Consensus        12 ~~~~l~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~i~G~~   50 (227)
T cd03260          12 DKHALKDISLDIPKG--EITALIGPSGCGKSTLLRLLNRLN   50 (227)
T ss_pred             CceeeeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHHhhc
Confidence            456899999999999  999999999999999999999986

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=98.75  E-value=8.4e-09  Score=80.62  Aligned_cols=43  Identities=33%  Similarity=0.431  Sum_probs=38.9

Q ss_pred             CccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            5 RIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      .++++++|++++|  ..++|+|+||+|||||++.|+|...+.+|.
T Consensus        19 ~~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~   61 (228)
T cd03257          19 KALDDVSFSIKKG--ETLGLVGESGSGKSTLARAILGLLKPTSGS   61 (228)
T ss_pred             eeecCceeEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCce
Confidence            6899999999999  999999999999999999999987655543

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>KOG2486 consensus Predicted GTPase [General function prediction only]

Probab=98.75  E-value=6.9e-08  Score=75.17  Aligned_cols=115  Identities=15%  Similarity=0.215  Sum_probs=73.5

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhCCCCc-cccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCC----CCCcC--
Q 036363           16 SNGVRTVVLVGHTGNGKSATGNSILGRRAF-KSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFS----AGSEF--   88 (240)
Q Consensus        16 ~~~~~~i~lvG~~g~GKSTlin~l~g~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~----~~~~~--   88 (240)
                      .+....++++|.+++|||+|+|.++..... ..+....+.|.....+.    -+..++++|.||+....    ...+.  
T Consensus       133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~----v~~~~~~vDlPG~~~a~y~~~~~~d~~~  208 (320)
T KOG2486|consen  133 KDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFH----VGKSWYEVDLPGYGRAGYGFELPADWDK  208 (320)
T ss_pred             CCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeee----ccceEEEEecCCcccccCCccCcchHhH
Confidence            455589999999999999999999865332 22222344454444332    35688999999943221    11111  


Q ss_pred             ---------CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363           89 ---------DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        89 ---------~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~  139 (240)
                               ...-.++++++++.++...|...+.++-     +...|+.+|+||||....
T Consensus       209 ~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~g-----e~~VP~t~vfTK~DK~k~  263 (320)
T KOG2486|consen  209 FTKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLG-----ENNVPMTSVFTKCDKQKK  263 (320)
T ss_pred             hHHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHh-----hcCCCeEEeeehhhhhhh
Confidence                     3333455556666566666766766663     334679999999997643

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=98.75  E-value=6.1e-09  Score=82.14  Aligned_cols=44  Identities=32%  Similarity=0.420  Sum_probs=39.3

Q ss_pred             CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 036363            3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSR   48 (240)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~   48 (240)
                      ++.++++++|++.+|  ..++|+|+||+|||||+++|+|...+.+|
T Consensus        15 ~~~~l~~~sl~i~~G--e~~~l~G~nGsGKSTLl~~l~G~~~~~~G   58 (241)
T PRK10895         15 GRRVVEDVSLTVNSG--EIVGLLGPNGAGKTTTFYMVVGIVPRDAG   58 (241)
T ss_pred             CEEEEeeeeEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            456889999999999  99999999999999999999998765554

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.75  E-value=8.1e-09  Score=82.85  Aligned_cols=46  Identities=22%  Similarity=0.136  Sum_probs=40.5

Q ss_pred             CCCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            2 GGSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      +++.++++++|++.+|  ..++|+|+||+|||||+++|+|...+.+|.
T Consensus        12 ~~~~il~~isl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~   57 (271)
T PRK13638         12 QDEPVLKGLNLDFSLS--PVTGLVGANGCGKSTLFMNLSGLLRPQKGA   57 (271)
T ss_pred             CCcccccceEEEEcCC--CEEEEECCCCCCHHHHHHHHcCCCCCCccE
Confidence            3456899999999999  999999999999999999999987665553

>TIGR03348 VI_IcmF type VI secretion protein IcmF

Probab=98.75  E-value=3e-07  Score=87.29  Aligned_cols=119  Identities=18%  Similarity=0.250  Sum_probs=77.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccC------CCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCC---CcC--
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRA------SSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAG---SEF--   88 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~------~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~---~~~--   88 (240)
                      .=.++||++|+||||+++.. |...+-...      ...+.|..     +.|.-....+++||+|.+-....   ...  
T Consensus       112 PWYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~-----c~wwf~~~avliDtaG~y~~~~~~~~~~~~~  185 (1169)
T TIGR03348       112 PWYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRN-----CDWWFTDEAVLIDTAGRYTTQDSDPEEDAAA  185 (1169)
T ss_pred             CCEEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcc-----cceEecCCEEEEcCCCccccCCCcccccHHH
Confidence            45789999999999999876 555432211      11223333     33434556779999997754432   111  


Q ss_pred             --------------CCceEEEEEEECCCCC--CHHH--------HHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCCcccH
Q 036363           89 --------------DEIHAALVVFSVRSRF--SQEE--------EATLHSLQTLFGKNCFDYMIVVFSGRDELEANDETL  144 (240)
Q Consensus        89 --------------~~~~~~l~v~~~~~~~--~~~~--------~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~~~~~  144 (240)
                                    ..++++|+++++.+-+  +..+        +..+..+.+.+|-.  .|+.+|+||+|.+..    +
T Consensus       186 W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~--~PVYvv~Tk~Dll~G----F  259 (1169)
T TIGR03348       186 WLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGAR--FPVYLVLTKADLLAG----F  259 (1169)
T ss_pred             HHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCC--CCEEEEEecchhhcC----H
Confidence                          7799999999987333  2222        55666677777753  689999999997764    4


Q ss_pred             HHHhcc
Q 036363          145 EDYLGR  150 (240)
Q Consensus       145 ~~~~~~  150 (240)
                      .+|+..
T Consensus       260 ~~~f~~  265 (1169)
T TIGR03348       260 EEFFAD  265 (1169)
T ss_pred             HHHHHh
Confidence            555555

Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.

>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]

Probab=98.75  E-value=2.8e-09  Score=87.10  Aligned_cols=116  Identities=22%  Similarity=0.269  Sum_probs=90.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCcc--ccCC--------------CCCcceeEEEEEEEEeCCcEEEEEeCCCCCC
Q 036363           18 GVRTVVLVGHTGNGKSATGNSILGRRAFK--SRAS--------------SSGVTSTCEMHRTVLKDGQVVNVIDTPGLFD   81 (240)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~--~~~~--------------~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~   81 (240)
                      ..++|+++.+..+||||....|+-.....  .+..              ..|.|.........| ++++++++||||+.+
T Consensus        36 kirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdw-kg~rinlidtpghvd  114 (753)
T KOG0464|consen   36 KIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDW-KGHRINLIDTPGHVD  114 (753)
T ss_pred             hhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeeccc-ccceEeeecCCCcce
Confidence            34799999999999999998886433211  1111              236677777777888 999999999999999


Q ss_pred             CCCCCcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363           82 FSAGSEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        82 ~~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~  139 (240)
                      |.-..+.  +..|+++.|+|++.+...+...+|+...     ....|..+.+||+|++..
T Consensus       115 f~leverclrvldgavav~dasagve~qtltvwrqad-----k~~ip~~~finkmdk~~a  169 (753)
T KOG0464|consen  115 FRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQAD-----KFKIPAHCFINKMDKLAA  169 (753)
T ss_pred             EEEEHHHHHHHhcCeEEEEeccCCcccceeeeehhcc-----ccCCchhhhhhhhhhhhh
Confidence            9876665  8889999999999888888888887763     334667888999998754

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=98.75  E-value=6.5e-09  Score=81.04  Aligned_cols=45  Identities=24%  Similarity=0.291  Sum_probs=40.0

Q ss_pred             CCCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 036363            2 GGSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSR   48 (240)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~   48 (240)
                      |+..++++++|++.+|  ..++|+|+||+|||||+++|+|...+.+|
T Consensus        33 ~~~~il~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~p~~G   77 (224)
T cd03220          33 GEFWALKDVSFEVPRG--ERIGLIGRNGAGKSTLLRLLAGIYPPDSG   77 (224)
T ss_pred             CCeEEEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence            4577999999999999  99999999999999999999998655444

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]

Probab=98.74  E-value=3.6e-08  Score=81.59  Aligned_cols=55  Identities=15%  Similarity=0.190  Sum_probs=42.7

Q ss_pred             CCCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeE
Q 036363            2 GGSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTC   58 (240)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~   58 (240)
                      |..+++..++|-+.-.  .+|+||||||+|||||+..|+|...+..+......+..+
T Consensus       598 gqkpLFkkldFGiDmd--SRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnhrL~i  652 (807)
T KOG0066|consen  598 GQKPLFKKLDFGIDMD--SRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHRLRI  652 (807)
T ss_pred             CCCchhhccccccccc--ceeEEECCCCccHHHHHHHHhcCCCCCcchhhccceeee
Confidence            3456788888888777  899999999999999999999988776665444333333

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=98.74  E-value=7.9e-09  Score=81.47  Aligned_cols=43  Identities=26%  Similarity=0.281  Sum_probs=38.9

Q ss_pred             CCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 036363            4 SRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSR   48 (240)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~   48 (240)
                      ..++++++|++.+|  ..++|+|+||+|||||+++|+|...+.+|
T Consensus        14 ~~~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G   56 (241)
T cd03256          14 KKALKDVSLSINPG--EFVALIGPSGAGKSTLLRCLNGLVEPTSG   56 (241)
T ss_pred             cEEEecceEEEcCC--CEEEEECCCCCCHHHHHHHHhCCcCCCCc
Confidence            56899999999999  99999999999999999999998765554

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=98.74  E-value=1e-08  Score=91.62  Aligned_cols=44  Identities=27%  Similarity=0.399  Sum_probs=40.0

Q ss_pred             CCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            4 SRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      ..+++++++.+++|  .+|+++|++|||||||++.|+|...+..|.
T Consensus       486 ~~vL~~isL~I~~G--e~vaIvG~SGsGKSTL~KLL~gly~p~~G~  529 (709)
T COG2274         486 PPVLEDLSLEIPPG--EKVAIVGRSGSGKSTLLKLLLGLYKPQQGR  529 (709)
T ss_pred             cchhhceeEEeCCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCce
Confidence            46899999999999  999999999999999999999988776654

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=98.74  E-value=6.8e-09  Score=83.32  Aligned_cols=45  Identities=29%  Similarity=0.406  Sum_probs=39.8

Q ss_pred             CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      ++.++++++|++.+|  ..++|+|+||+|||||+++|+|...+.+|.
T Consensus        19 ~~~il~~vsl~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~   63 (272)
T PRK15056         19 GHTALRDASFTVPGG--SIAALVGVNGSGKSTLFKALMGFVRLASGK   63 (272)
T ss_pred             CcEEEEeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCceE
Confidence            356899999999999  999999999999999999999987665543

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=98.74  E-value=9.1e-09  Score=82.37  Aligned_cols=44  Identities=20%  Similarity=0.274  Sum_probs=39.7

Q ss_pred             CCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            4 SRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      ..++++++|.+.+|  ..++|+|+||+|||||+++|+|...+.+|.
T Consensus        26 ~~~l~~vsl~i~~G--e~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~   69 (267)
T PRK15112         26 VEAVKPLSFTLREG--QTLAIIGENGSGKSTLAKMLAGMIEPTSGE   69 (267)
T ss_pred             cceeeeeeEEecCC--CEEEEEcCCCCCHHHHHHHHhCCCCCCCCE
Confidence            46899999999999  999999999999999999999987666553

>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.74  E-value=2.6e-08  Score=73.93  Aligned_cols=46  Identities=24%  Similarity=0.274  Sum_probs=39.9

Q ss_pred             CCCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            2 GGSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      |...+++++++.+++|  ..-+++||||+|||||+..++......+|.
T Consensus        12 ~~~~vl~~isl~i~~g--~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~   57 (252)
T COG4604          12 GTKVVLDDVSLDIPKG--GITSIIGPNGAGKSTLLSMMSRLLKKDSGE   57 (252)
T ss_pred             CCEEeeccceeeecCC--ceeEEECCCCccHHHHHHHHHHhccccCce
Confidence            5677899999999999  899999999999999999988776655543

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.74  E-value=3.4e-08  Score=81.51  Aligned_cols=114  Identities=23%  Similarity=0.317  Sum_probs=89.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCcc-ccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEEEEE
Q 036363           21 TVVLVGHTGNGKSATGNSILGRRAFK-SRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAALVV   97 (240)
Q Consensus        21 ~i~lvG~~g~GKSTlin~l~g~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~v   97 (240)
                      .|+..|+--.|||||+.+++|..... ......|.|....++.... .+..+.++|.||+.++......  .+.|.+++|
T Consensus         2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~-~d~~~~fIDvpgh~~~i~~miag~~~~d~alLv   80 (447)
T COG3276           2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKL-EDGVMGFIDVPGHPDFISNLLAGLGGIDYALLV   80 (447)
T ss_pred             eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccC-CCCceEEeeCCCcHHHHHHHHhhhcCCceEEEE
Confidence            57889999999999999999865311 1233468888888888877 6678999999999998655444  789999999


Q ss_pred             EECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363           98 FSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        98 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~  139 (240)
                      +++++++..+..+.+..+. .||-   ++.++|+||+|...+
T Consensus        81 V~~deGl~~qtgEhL~iLd-llgi---~~giivltk~D~~d~  118 (447)
T COG3276          81 VAADEGLMAQTGEHLLILD-LLGI---KNGIIVLTKADRVDE  118 (447)
T ss_pred             EeCccCcchhhHHHHHHHH-hcCC---CceEEEEeccccccH
Confidence            9998888888777665553 4453   668999999997755

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=98.74  E-value=1.6e-08  Score=91.71  Aligned_cols=44  Identities=27%  Similarity=0.332  Sum_probs=39.9

Q ss_pred             CCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            4 SRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      +.++++++|++++|  .+|+++|++|+|||||++.|+|...+.+|.
T Consensus       492 ~~vL~~isl~i~~G--e~vaIvG~sGsGKSTLlklL~gl~~p~~G~  535 (710)
T TIGR03796       492 PPLIENFSLTLQPG--QRVALVGGSGSGKSTIAKLVAGLYQPWSGE  535 (710)
T ss_pred             CCcccceeEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCcE
Confidence            56899999999999  999999999999999999999987766654

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=98.74  E-value=7.2e-09  Score=81.44  Aligned_cols=45  Identities=24%  Similarity=0.244  Sum_probs=39.8

Q ss_pred             CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      ++.++++++|.+.+|  ..++|+|+||+|||||++.|+|...+.+|.
T Consensus        13 ~~~~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~p~~G~   57 (236)
T TIGR03864        13 ARRALDDVSFTVRPG--EFVALLGPNGAGKSTLFSLLTRLYVAQEGQ   57 (236)
T ss_pred             CEEEEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCcCCCceE
Confidence            456889999999999  999999999999999999999987665553

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=98.74  E-value=3.8e-08  Score=77.14  Aligned_cols=39  Identities=31%  Similarity=0.306  Sum_probs=35.2

Q ss_pred             CCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 036363            8 DDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSR   48 (240)
Q Consensus         8 ~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~   48 (240)
                      .+++|++.+|  ..++|+|+||+|||||++.|+|...+.+|
T Consensus        16 ~~is~~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G   54 (232)
T PRK10771         16 MRFDLTVERG--ERVAILGPSGAGKSTLLNLIAGFLTPASG   54 (232)
T ss_pred             ceeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            3899999999  99999999999999999999998766555

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=98.74  E-value=7.9e-09  Score=80.38  Aligned_cols=44  Identities=25%  Similarity=0.299  Sum_probs=39.1

Q ss_pred             CCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            4 SRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      ..++++++|.+.+|  ..++|+|+||+|||||+++|+|...+.+|.
T Consensus        18 ~~~l~~isl~i~~G--~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~   61 (221)
T TIGR02211        18 TRVLKGVSLSIGKG--EIVAIVGSSGSGKSTLLHLLGGLDNPTSGE   61 (221)
T ss_pred             eEeEeeeEEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCCCCcE
Confidence            35899999999999  999999999999999999999987655543

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=98.74  E-value=2.1e-06  Score=72.43  Aligned_cols=115  Identities=15%  Similarity=0.150  Sum_probs=64.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHh------CCCCcc--ccCCCC---------CcceeEEEEEEE--E------------
Q 036363           17 NGVRTVVLVGHTGNGKSATGNSIL------GRRAFK--SRASSS---------GVTSTCEMHRTV--L------------   65 (240)
Q Consensus        17 ~~~~~i~lvG~~g~GKSTlin~l~------g~~~~~--~~~~~~---------~~t~~~~~~~~~--~------------   65 (240)
                      +++..|+++|++|+||||++..|+      |....-  ......         +.......+...  .            
T Consensus        98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~  177 (429)
T TIGR01425        98 GKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEK  177 (429)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHH
Confidence            445799999999999999999886      322110  000000         000111111110  0            


Q ss_pred             --eCCcEEEEEeCCCCCCCCCCCcC--------CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCC
Q 036363           66 --KDGQVVNVIDTPGLFDFSAGSEF--------DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRD  135 (240)
Q Consensus        66 --~~~~~~~l~DtpG~~~~~~~~~~--------~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D  135 (240)
                        ..+..+.++||||........-.        ..++.+++|+|+..+...  ....+.+.+.     ..+.-+|+||.|
T Consensus       178 ~~~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a--~~~a~~F~~~-----~~~~g~IlTKlD  250 (429)
T TIGR01425       178 FKKENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAA--EAQAKAFKDS-----VDVGSVIITKLD  250 (429)
T ss_pred             HHhCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhH--HHHHHHHHhc-----cCCcEEEEECcc
Confidence              02457899999997654322111        568889999998733222  2333333322     235678999999


Q ss_pred             CCC
Q 036363          136 ELE  138 (240)
Q Consensus       136 ~~~  138 (240)
                      ...
T Consensus       251 ~~a  253 (429)
T TIGR01425       251 GHA  253 (429)
T ss_pred             CCC
Confidence            543

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=98.73  E-value=9.3e-09  Score=81.53  Aligned_cols=45  Identities=18%  Similarity=0.257  Sum_probs=39.5

Q ss_pred             CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      ++.++++++|++.+|  ..++|+|+||+|||||+++|+|...+.+|.
T Consensus        15 ~~~~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~   59 (250)
T PRK11264         15 GQTVLHGIDLEVKPG--EVVAIIGPSGSGKTTLLRCINLLEQPEAGT   59 (250)
T ss_pred             CeeeeccceEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCeE
Confidence            456899999999999  999999999999999999999987655543

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=98.73  E-value=9e-09  Score=81.22  Aligned_cols=44  Identities=27%  Similarity=0.268  Sum_probs=39.5

Q ss_pred             CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 036363            3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSR   48 (240)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~   48 (240)
                      ++.++++++|++.+|  ..++|+|+||+|||||+++|+|...+.+|
T Consensus        14 ~~~il~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~~~G   57 (242)
T PRK11124         14 AHQALFDITLDCPQG--ETLVLLGPSGAGKSSLLRVLNLLEMPRSG   57 (242)
T ss_pred             CeeeEeeeeeEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence            456899999999999  99999999999999999999998765554

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=98.73  E-value=2.5e-08  Score=90.18  Aligned_cols=44  Identities=32%  Similarity=0.370  Sum_probs=39.9

Q ss_pred             CCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            4 SRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      ..++++++|++++|  .+++++|++|+|||||++.|+|...+.+|.
T Consensus       466 ~~vL~~isl~i~~G--e~vaIvG~sGsGKSTLlklL~gl~~p~~G~  509 (686)
T TIGR03797       466 PLILDDVSLQIEPG--EFVAIVGPSGSGKSTLLRLLLGFETPESGS  509 (686)
T ss_pred             ccceeeeEEEECCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCCE
Confidence            46899999999999  999999999999999999999987766654

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=98.73  E-value=8.2e-09  Score=81.79  Aligned_cols=44  Identities=27%  Similarity=0.358  Sum_probs=39.2

Q ss_pred             CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 036363            3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSR   48 (240)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~   48 (240)
                      ++.++++++|.+.+|  ..++|+|+||+|||||+++|+|...+.+|
T Consensus        16 ~~~vl~~vs~~i~~G--e~~~I~G~NGsGKSTLl~~i~Gl~~p~~G   59 (251)
T PRK09544         16 QRRVLSDVSLELKPG--KILTLLGPNGAGKSTLVRVVLGLVAPDEG   59 (251)
T ss_pred             CceEEEeEEEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence            456889999999999  99999999999999999999998765554

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=98.73  E-value=9.2e-09  Score=93.04  Aligned_cols=44  Identities=25%  Similarity=0.326  Sum_probs=39.6

Q ss_pred             CCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            4 SRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      ..++++++|++++|  .+|+++|++|+|||||++.|+|...+.+|.
T Consensus       478 ~~vL~~i~l~i~~G--~~iaIvG~sGsGKSTLlklL~gl~~p~~G~  521 (694)
T TIGR03375       478 TPALDNVSLTIRPG--EKVAIIGRIGSGKSTLLKLLLGLYQPTEGS  521 (694)
T ss_pred             ccceeeeeEEECCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCce
Confidence            45899999999999  999999999999999999999987766654

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=98.72  E-value=1e-08  Score=82.05  Aligned_cols=44  Identities=25%  Similarity=0.339  Sum_probs=39.6

Q ss_pred             CCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            4 SRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      ..++++++|++.+|  ..++|+|+||+|||||+++|+|...+.+|.
T Consensus        24 ~~il~~isl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~   67 (265)
T TIGR02769        24 APVLTNVSLSIEEG--ETVGLLGRSGCGKSTLARLLLGLEKPAQGT   67 (265)
T ss_pred             eEEeeCceeEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCcE
Confidence            56899999999999  999999999999999999999987665543

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

Probab=98.72  E-value=3.3e-09  Score=78.50  Aligned_cols=45  Identities=24%  Similarity=0.392  Sum_probs=39.6

Q ss_pred             CCCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 036363            2 GGSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSR   48 (240)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~   48 (240)
                      ||-..+++++|++.+|  .-=++|||||+||||++..|+|...+..+
T Consensus        16 ~GF~Aln~ls~~v~~G--elr~lIGpNGAGKTT~mD~ItGKtrp~~G   60 (249)
T COG4674          16 GGFKALNDLSFSVDPG--ELRVLIGPNGAGKTTLMDVITGKTRPQEG   60 (249)
T ss_pred             cceeeeeeeEEEecCC--eEEEEECCCCCCceeeeeeecccCCCCcc
Confidence            5677889999999999  67789999999999999999999876644

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=98.72  E-value=9e-09  Score=91.07  Aligned_cols=45  Identities=20%  Similarity=0.178  Sum_probs=40.1

Q ss_pred             CCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCC
Q 036363            4 SRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRAS   50 (240)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~   50 (240)
                      ..++++++|++++|  .+++++|++|+|||||++.|+|...+.+|..
T Consensus       353 ~~il~~i~~~i~~G--~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I  397 (574)
T PRK11160        353 QPVLKGLSLQIKAG--EKVALLGRTGCGKSTLLQLLTRAWDPQQGEI  397 (574)
T ss_pred             CcceecceEEECCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCceE
Confidence            45899999999999  9999999999999999999999876666543

>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=98.72  E-value=6.6e-09  Score=87.67  Aligned_cols=45  Identities=20%  Similarity=0.296  Sum_probs=39.7

Q ss_pred             CCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCC
Q 036363            4 SRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRAS   50 (240)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~   50 (240)
                      ..+++|++|++..|  .+|+|+|++|||||||+..|+|.-.+..|..
T Consensus       351 ~~~L~~~~l~l~~G--EkvAIlG~SGsGKSTllqLl~~~~~~~~G~i  395 (573)
T COG4987         351 TKALKNFNLTLAQG--EKVAILGRSGSGKSTLLQLLAGAWDPQQGSI  395 (573)
T ss_pred             cchhhccceeecCC--CeEEEECCCCCCHHHHHHHHHhccCCCCCee
Confidence            36899999999999  9999999999999999999998766655543

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=98.72  E-value=1.1e-08  Score=77.12  Aligned_cols=44  Identities=27%  Similarity=0.342  Sum_probs=38.8

Q ss_pred             CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 036363            3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSR   48 (240)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~   48 (240)
                      +..++++++|.+.+|  ..++|+|+||+|||||++.|+|...+.+|
T Consensus        11 ~~~~l~~~~~~i~~G--~~~~l~G~nGsGKStLl~~i~G~~~~~~G   54 (180)
T cd03214          11 GRTVLDDLSLSIEAG--EIVGILGPNGAGKSTLLKTLAGLLKPSSG   54 (180)
T ss_pred             CeeeEeeeEEEECCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            346889999999999  99999999999999999999998765444

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=98.72  E-value=1e-08  Score=80.84  Aligned_cols=44  Identities=23%  Similarity=0.324  Sum_probs=39.2

Q ss_pred             CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 036363            3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSR   48 (240)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~   48 (240)
                      ++.++++++|++.+|  ..++|+|+||+|||||+++|+|...+.+|
T Consensus        13 ~~~il~~~s~~i~~G--e~~~l~G~nGsGKSTLl~~l~G~~~~~~G   56 (240)
T PRK09493         13 PTQVLHNIDLNIDQG--EVVVIIGPSGSGKSTLLRCINKLEEITSG   56 (240)
T ss_pred             CeEEeeeeeEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence            456899999999999  99999999999999999999998765554

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=98.71  E-value=3.6e-08  Score=82.03  Aligned_cols=39  Identities=23%  Similarity=0.376  Sum_probs=35.1

Q ss_pred             CccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            9 DCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         9 ~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      +++|.+.+|  ..++|+|+||+|||||+++|+|...+.+|.
T Consensus        15 ~isl~i~~G--ei~~l~G~nGsGKSTLl~~iaGl~~p~~G~   53 (354)
T TIGR02142        15 DADFTLPGQ--GVTAIFGRSGSGKTTLIRLIAGLTRPDEGE   53 (354)
T ss_pred             EEEEEECCC--CEEEEECCCCCCHHHHHHHHhCCCCCCceE
Confidence            799999999  899999999999999999999987665543

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=98.71  E-value=1.1e-08  Score=81.25  Aligned_cols=44  Identities=25%  Similarity=0.314  Sum_probs=39.3

Q ss_pred             CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 036363            3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSR   48 (240)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~   48 (240)
                      +..++++++|++.+|  ..++|+|+||+|||||+++|+|...+.+|
T Consensus        15 ~~~~l~~isl~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~~~G   58 (253)
T TIGR02323        15 GGKGCRDVSFDLYPG--EVLGIVGESGSGKSTLLGCLAGRLAPDHG   58 (253)
T ss_pred             CceEeecceEEEeCC--cEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            446789999999999  99999999999999999999998766554

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=98.71  E-value=1.4e-08  Score=78.97  Aligned_cols=43  Identities=26%  Similarity=0.284  Sum_probs=38.8

Q ss_pred             CCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 036363            4 SRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSR   48 (240)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~   48 (240)
                      ..++++++|++.+|  ..++|+|+||+|||||+++|+|...+.+|
T Consensus        17 ~~~l~~i~~~i~~G--~~~~i~G~nGsGKSTLl~~i~G~~~~~~G   59 (220)
T cd03245          17 IPALDNVSLTIRAG--EKVAIIGRVGSGKSTLLKLLAGLYKPTSG   59 (220)
T ss_pred             cccccceEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCcCCCCC
Confidence            45899999999999  99999999999999999999998765554

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=98.71  E-value=1.1e-08  Score=80.76  Aligned_cols=44  Identities=23%  Similarity=0.330  Sum_probs=39.4

Q ss_pred             CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 036363            3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSR   48 (240)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~   48 (240)
                      +..++++++|++.+|  ..++|+|+||+|||||+++|+|...+.+|
T Consensus        14 ~~~~l~~vs~~i~~G--e~~~l~G~nGsGKSTLl~~l~G~~~p~~G   57 (242)
T TIGR03411        14 GFKALNDLSLYVDPG--ELRVIIGPNGAGKTTMMDVITGKTRPDEG   57 (242)
T ss_pred             CeEEeeeeeEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCCCCC
Confidence            456899999999999  99999999999999999999998765554

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=98.71  E-value=1.4e-08  Score=79.41  Aligned_cols=44  Identities=23%  Similarity=0.273  Sum_probs=39.3

Q ss_pred             CCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            4 SRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      ..++++++|++++|  ..++|+|+||+|||||+++|+|...+.+|.
T Consensus        16 ~~~l~~isl~i~~G--~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~   59 (229)
T cd03254          16 KPVLKDINFSIKPG--ETVAIVGPTGAGKTTLINLLMRFYDPQKGQ   59 (229)
T ss_pred             CccccceEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCcCCCCCE
Confidence            35899999999999  899999999999999999999987665553

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=98.71  E-value=1.3e-08  Score=80.03  Aligned_cols=44  Identities=32%  Similarity=0.294  Sum_probs=39.2

Q ss_pred             CCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            4 SRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      ..++++++|++++|  ..++|+|+||+|||||+++|+|...+.+|.
T Consensus        16 ~~~l~~i~~~i~~G--e~~~l~G~nGsGKSTLl~~i~G~~~~~~G~   59 (238)
T cd03249          16 VPILKGLSLTIPPG--KTVALVGSSGCGKSTVVSLLERFYDPTSGE   59 (238)
T ss_pred             ccceeceEEEecCC--CEEEEEeCCCCCHHHHHHHHhccCCCCCCE
Confidence            35899999999999  999999999999999999999987655553

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=98.71  E-value=4.1e-08  Score=77.10  Aligned_cols=42  Identities=26%  Similarity=0.222  Sum_probs=37.9

Q ss_pred             CccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 036363            5 RIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSR   48 (240)
Q Consensus         5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~   48 (240)
                      .++++++|++.+|  ..++|+|+||+|||||+++|+|...+.+|
T Consensus        13 ~~l~~is~~i~~G--e~~~i~G~nG~GKStLl~~l~G~~~p~~G   54 (235)
T cd03299          13 FKLKNVSLEVERG--DYFVILGPTGSGKSVLLETIAGFIKPDSG   54 (235)
T ss_pred             ceeeeeEEEEcCC--cEEEEECCCCCCHHHHHHHHhCCcCCCce
Confidence            3789999999999  99999999999999999999998766554

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=98.71  E-value=9.3e-08  Score=75.52  Aligned_cols=47  Identities=13%  Similarity=0.119  Sum_probs=36.5

Q ss_pred             CCCccCCccccCCCC---CceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            3 GSRIDDDCELTSPSN---GVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         3 ~~~~~~~~~~~~~~~---~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      ....++++++.+.++   ....++|+|+||+|||||+++|+|...+.+|.
T Consensus         6 ~~~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~   55 (246)
T cd03237           6 MKKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGD   55 (246)
T ss_pred             cccccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCe
Confidence            345667777777632   22899999999999999999999987666554

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=98.70  E-value=1e-08  Score=82.01  Aligned_cols=44  Identities=25%  Similarity=0.342  Sum_probs=39.2

Q ss_pred             CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 036363            3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSR   48 (240)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~   48 (240)
                      ++.++++++|++.+|  ..++|+|+||+|||||+++|+|...+.+|
T Consensus        23 ~~~il~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G   66 (265)
T PRK10575         23 GRTLLHPLSLTFPAG--KVTGLIGHNGSGKSTLLKMLGRHQPPSEG   66 (265)
T ss_pred             CEEEEeeeeeEEcCC--CEEEEECCCCCCHHHHHHHHcCCCCCCCC
Confidence            456899999999999  99999999999999999999998765554

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=98.70  E-value=8.9e-09  Score=76.88  Aligned_cols=36  Identities=31%  Similarity=0.319  Sum_probs=33.6

Q ss_pred             CCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhC
Q 036363            4 SRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILG   41 (240)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g   41 (240)
                      ..++++++|++++|  ..++|+|+||+|||||++++++
T Consensus         8 ~~~l~~isl~i~~G--~~~~l~G~nG~GKSTLl~~il~   43 (176)
T cd03238           8 VHNLQNLDVSIPLN--VLVVVTGVSGSGKSTLVNEGLY   43 (176)
T ss_pred             eeeecceEEEEcCC--CEEEEECCCCCCHHHHHHHHhh
Confidence            46899999999999  9999999999999999999974

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>TIGR01192 chvA glucan exporter ATP-binding protein

Probab=98.70  E-value=2.2e-08  Score=88.84  Aligned_cols=44  Identities=25%  Similarity=0.203  Sum_probs=39.4

Q ss_pred             CCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            4 SRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      ..++++++|.+++|  .+++++|++|+|||||++.|+|...+.+|.
T Consensus       348 ~~~l~~i~~~i~~G--~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~  391 (585)
T TIGR01192       348 SQGVFDVSFEAKAG--QTVAIVGPTGAGKTTLINLLQRVYDPTVGQ  391 (585)
T ss_pred             CccccceeEEEcCC--CEEEEECCCCCCHHHHHHHHccCCCCCCCE
Confidence            45789999999999  999999999999999999999987665554

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=98.70  E-value=1.1e-08  Score=81.14  Aligned_cols=45  Identities=18%  Similarity=0.268  Sum_probs=39.6

Q ss_pred             CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      +..++++++|++.+|  ..++|+|+||+|||||++.|+|...+.+|.
T Consensus        12 ~~~~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~   56 (252)
T TIGR03005        12 ILTVLDGLNFSVAAG--EKVALIGPSGSGKSTILRILMTLEPIDEGQ   56 (252)
T ss_pred             CeeEEeeeeEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCceE
Confidence            356889999999999  999999999999999999999987665543

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=98.70  E-value=1e-08  Score=80.37  Aligned_cols=43  Identities=19%  Similarity=0.261  Sum_probs=38.4

Q ss_pred             CCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 036363            4 SRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSR   48 (240)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~   48 (240)
                      ..++++++|++.+|  ..++|+|+||+|||||+++|+|...+.+|
T Consensus        22 ~~il~~isl~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G   64 (233)
T PRK11629         22 TDVLHNVSFSIGEG--EMMAIVGSSGSGKSTLLHLLGGLDTPTSG   64 (233)
T ss_pred             eeeEEeeEEEEcCC--cEEEEECCCCCCHHHHHHHHhcCCCCCce
Confidence            35899999999999  99999999999999999999998765444

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=98.70  E-value=1.5e-08  Score=78.72  Aligned_cols=45  Identities=24%  Similarity=0.341  Sum_probs=39.7

Q ss_pred             CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      +..++++++|++.+|  ..++|+|+||+|||||+++|+|...+.+|.
T Consensus        13 ~~~il~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~i~G~~~~~~G~   57 (218)
T cd03290          13 GLATLSNINIRIPTG--QLTMIVGQVGCGKSSLLLAILGEMQTLEGK   57 (218)
T ss_pred             CCcceeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhccCCCCCCe
Confidence            356899999999999  999999999999999999999987655543

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=98.70  E-value=1e-08  Score=82.21  Aligned_cols=44  Identities=27%  Similarity=0.318  Sum_probs=39.2

Q ss_pred             CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 036363            3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSR   48 (240)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~   48 (240)
                      +..++++++|++.+|  ..++|+|+||+|||||++.|+|...+.+|
T Consensus        19 ~~~il~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G   62 (269)
T PRK11831         19 NRCIFDNISLTVPRG--KITAIMGPSGIGKTTLLRLIGGQIAPDHG   62 (269)
T ss_pred             CEEEEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            446789999999999  99999999999999999999998765554

>PRK14845 translation initiation factor IF-2; Provisional

Probab=98.70  E-value=5.1e-08  Score=89.96  Aligned_cols=101  Identities=17%  Similarity=0.170  Sum_probs=73.6

Q ss_pred             cHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC-----------------cEEEEEeCCCCCCCCCCCcC--CCc
Q 036363           31 GKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG-----------------QVVNVIDTPGLFDFSAGSEF--DEI   91 (240)
Q Consensus        31 GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~-----------------~~~~l~DtpG~~~~~~~~~~--~~~   91 (240)
                      +||||+..|.+.......  ..|.|.....+.+.+...                 ..+.+|||||+..+......  ..+
T Consensus       473 ~KTtLLD~iR~t~v~~~E--aGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~a  550 (1049)
T PRK14845        473 HNTTLLDKIRKTRVAKKE--AGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLA  550 (1049)
T ss_pred             ccccHHHHHhCCCccccc--CCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccC
Confidence            499999999998764432  366777666655544211                 13789999999887554333  679


Q ss_pred             eEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           92 HAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        92 ~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      |++++|+++++++..+....+..+...     ..|+++++||+|...
T Consensus       551 DivlLVVDa~~Gi~~qT~e~I~~lk~~-----~iPiIVViNKiDL~~  592 (1049)
T PRK14845        551 DLAVLVVDINEGFKPQTIEAINILRQY-----KTPFVVAANKIDLIP  592 (1049)
T ss_pred             CEEEEEEECcccCCHhHHHHHHHHHHc-----CCCEEEEEECCCCcc
Confidence            999999999988888887777766532     257999999999653

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.70  E-value=1.3e-08  Score=81.75  Aligned_cols=43  Identities=16%  Similarity=0.225  Sum_probs=39.0

Q ss_pred             CCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 036363            4 SRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSR   48 (240)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~   48 (240)
                      ..++++++|++.+|  ..++|+|+||+|||||+++|+|...+.+|
T Consensus        15 ~~~l~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G   57 (274)
T PRK13644         15 TPALENINLVIKKG--EYIGIIGKNGSGKSTLALHLNGLLRPQKG   57 (274)
T ss_pred             CceeeeeEEEEeCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence            45899999999999  99999999999999999999998765554

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=98.69  E-value=5.7e-09  Score=74.88  Aligned_cols=40  Identities=25%  Similarity=0.293  Sum_probs=35.2

Q ss_pred             cCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 036363            7 DDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSR   48 (240)
Q Consensus         7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~   48 (240)
                      ++++++.+++|  ..++|+|+||+|||||+++|+|...+..+
T Consensus         1 L~~v~~~i~~g--~~~~i~G~nGsGKStLl~~l~g~~~~~~G   40 (137)
T PF00005_consen    1 LKNVSLEIKPG--EIVAIVGPNGSGKSTLLKALAGLLPPDSG   40 (137)
T ss_dssp             EEEEEEEEETT--SEEEEEESTTSSHHHHHHHHTTSSHESEE
T ss_pred             CCceEEEEcCC--CEEEEEccCCCccccceeeeccccccccc
Confidence            46889999999  99999999999999999999998765433

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=98.69  E-value=1.4e-08  Score=79.93  Aligned_cols=44  Identities=20%  Similarity=0.265  Sum_probs=39.3

Q ss_pred             CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 036363            3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSR   48 (240)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~   48 (240)
                      ++.++++++|.+.+|  ..++|+|+||+|||||+++|+|...+.+|
T Consensus        17 ~~~~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~p~~G   60 (237)
T PRK11614         17 KIQALHEVSLHINQG--EIVTLIGANGAGKTTLLGTLCGDPRATSG   60 (237)
T ss_pred             CceeeeeeEEEEcCC--cEEEEECCCCCCHHHHHHHHcCCCCCCCc
Confidence            356899999999999  99999999999999999999998765554

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=98.69  E-value=1.2e-08  Score=81.11  Aligned_cols=45  Identities=22%  Similarity=0.283  Sum_probs=39.7

Q ss_pred             CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      +..++++++|++.+|  ..++|+|+||+|||||+++|+|...+.+|.
T Consensus        17 ~~~~l~~is~~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~   61 (255)
T PRK11300         17 GLLAVNNVNLEVREQ--EIVSLIGPNGAGKTTVFNCLTGFYKPTGGT   61 (255)
T ss_pred             CEEEEEeeeeEEcCC--eEEEEECCCCCCHHHHHHHHhCCcCCCcce
Confidence            456889999999999  999999999999999999999987665553

>PRK03695 vitamin B12-transporter ATPase; Provisional

Probab=98.69  E-value=2.4e-08  Score=79.10  Aligned_cols=37  Identities=22%  Similarity=0.178  Sum_probs=34.6

Q ss_pred             ccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCC
Q 036363            6 IDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRA   44 (240)
Q Consensus         6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~   44 (240)
                      .+++++|++.+|  ..++|+|+||+|||||+++|+|...
T Consensus        11 ~l~~vsl~i~~G--ei~~l~G~nGsGKSTLl~~l~Gl~~   47 (248)
T PRK03695         11 RLGPLSAEVRAG--EILHLVGPNGAGKSTLLARMAGLLP   47 (248)
T ss_pred             eecceEEEEcCC--CEEEEECCCCCCHHHHHHHHcCCCC
Confidence            578999999999  9999999999999999999999764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	240
3lxx_A	239	Crystal Structure Of Human Gtpase Imap Family Membe		3e-22
3v70_A	247	Crystal Structure Of Human Gtpase Imap Family Membe		1e-16
2xtm_A	234	Crystal Structure Of Gdp-Bound Human Gimap2, Amino		6e-15
2xto_A	240	Crystal Structure Of Gdp-Bound Human Gimap2, Amino		6e-15
3p1j_A	209	Crystal Structure Of Human Gtpase Imap Family Membe		6e-15
2xtp_A	260	Crystal Structure Of Nucleotide-Free Human Gimap2,		4e-14
1wdt_A	665	Crystal Structure Of Ttk003000868 From Thermus Ther		3e-04

>pdb|3LXX|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 4 Length = 239

Iteration: 1
 Score =  102 bits (253), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 65/187 (34%), Positives = 100/187 (53%), Gaps = 21/187 (11%)
Query: 15  PSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVI 74
           P N    +VLVG TG GKSATGNSILGR+ F S  ++  +T  CE   +  K+ ++V V+
Sbjct: 25  PRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELV-VV 83
Query: 75  DTPGLFD--FSAGSEFDEI-----------HAALVVFSVRSRFSQEEEATLHSLQTLFGK 121
           DTPG+FD          EI           HA L+V  +  R+++EE      +   FG+
Sbjct: 84  DTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPL-GRYTEEEHKATEKILKXFGE 142
Query: 122 NCFDYMIVVFSGRDELEANDETLEDYLGRECPKPLKEILHLFDNRCVLFDNKTKDA---A 178
               + I++F+ +D+L   D  L DYL RE P+ ++++  +F +R    +NK   A   A
Sbjct: 143 RARSFXILIFTRKDDL--GDTNLHDYL-REAPEDIQDLXDIFGDRYCALNNKATGAEQEA 199
Query: 179 KRTEQIG 185
           +R + +G
Sbjct: 200 QRAQLLG 206

>pdb|3V70|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 1 Length = 247

Iteration: 1
 Score = 83.2 bits (204), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 68/226 (30%), Positives = 112/226 (49%), Gaps = 26/226 (11%)
Query: 20  RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGL 79
           R ++LVG TG GKSATGNSILG+R F SR  ++ VT  C    +   D   V V+DTP +
Sbjct: 22  RRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTG-SRRWDKCHVEVVDTPDI 80
Query: 80  FDFSAGSEFDE---------------IHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCF 124
           F  S  S+ D                 HA L+V  +  RF+ +++  +  ++ +FG++  
Sbjct: 81  FS-SQVSKTDPGCEERGHCYLLSAPGPHALLLVTQL-GRFTAQDQQAVRQVRDMFGEDVL 138
Query: 125 DYMIVVFSGRDELEANDETLEDYLGRECPKPLKEILHLFDNRCVLFDNKT---KDAAKRT 181
            +M++VF+ +++L     +L DY+     + L+E++     R   FDN+    +  A+  
Sbjct: 139 KWMVIVFTRKEDLAGG--SLHDYVSNTENRALRELVAECGGRVCAFDNRATGREQEAQVV 196
Query: 182 EQIGKLRSLQLAREH-AARLKVEVTAKSTQMKSDDKIHKLREDLER 226
           + +G +  L L  EH  A    EV   +  ++      +LR   ER
Sbjct: 197 QLLGMVEGLVL--EHKGAHYSNEVYELAQVLRWAGPEERLRRVAER 240

>pdb|2XTM|A Chain A, Crystal Structure Of Gdp-Bound Human Gimap2, Amino Acid Residues 1-234 Length = 234

Iteration: 1
 Score = 77.8 bits (190), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 50/179 (27%), Positives = 97/179 (54%), Gaps = 18/179 (10%)
Query: 22  VVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFD 81
           ++LVG TG GKSA GNSIL ++AF+S+  S  +T TC   +    + ++V +IDTP +F 
Sbjct: 25  IILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIV-IIDTPDMFS 83
Query: 82  FSAGSE--FDEI-----------HAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMI 128
           +    E  + E+           H  L+V  +  R++ +++     ++ +FG++   + I
Sbjct: 84  WKDHCEALYKEVQRCYLLSAPGPHVLLLVTQL-GRYTSQDQQAAQRVKEIFGEDAMGHTI 142
Query: 129 VVFSGRDELEANDETLEDYLGRECPKPLKEILHLFDNRCVLFDNKTKDAAKRTEQIGKL 187
           V+F+ +++L  N  +L DY+     K L +++     R   F+N+  + + + +Q+ +L
Sbjct: 143 VLFTHKEDL--NGGSLMDYMHDSDNKALSKLVAACGGRICAFNNRA-EGSNQDDQVKEL 198

>pdb|2XTO|A Chain A, Crystal Structure Of Gdp-Bound Human Gimap2, Amino Acid Residues 21-260 Length = 240

Iteration: 1
 Score = 77.4 bits (189), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 50/179 (27%), Positives = 97/179 (54%), Gaps = 18/179 (10%)
Query: 22  VVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFD 81
           ++LVG TG GKSA GNSIL ++AF+S+  S  +T TC   +    + ++V +IDTP +F 
Sbjct: 5   IILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIV-IIDTPDMFS 63
Query: 82  FSAGSE--FDEI-----------HAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMI 128
           +    E  + E+           H  L+V  +  R++ +++     ++ +FG++   + I
Sbjct: 64  WKDHCEALYKEVQRCYLLSAPGPHVLLLVTQL-GRYTSQDQQAAQRVKEIFGEDAMGHTI 122
Query: 129 VVFSGRDELEANDETLEDYLGRECPKPLKEILHLFDNRCVLFDNKTKDAAKRTEQIGKL 187
           V+F+ +++L  N  +L DY+     K L +++     R   F+N+  + + + +Q+ +L
Sbjct: 123 VLFTHKEDL--NGGSLMDYMHDSDNKALSKLVAACGGRICAFNNRA-EGSNQDDQVKEL 178

>pdb|3P1J|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 2 In The Nucleotide-Free State Length = 209

Iteration: 1
 Score = 77.4 bits (189), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 50/179 (27%), Positives = 97/179 (54%), Gaps = 18/179 (10%)
Query: 22  VVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFD 81
           ++LVG TG GKSA GNSIL ++AF+S+  S  +T TC   +    + ++V +IDTP +F 
Sbjct: 8   IILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIV-IIDTPDMFS 66
Query: 82  FSAGSE--FDEI-----------HAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMI 128
           +    E  + E+           H  L+V  +  R++ +++     ++ +FG++   + I
Sbjct: 67  WKDHCEALYKEVQRCYLLSAPGPHVLLLVTQL-GRYTSQDQQAAQRVKEIFGEDAMGHTI 125
Query: 129 VVFSGRDELEANDETLEDYLGRECPKPLKEILHLFDNRCVLFDNKTKDAAKRTEQIGKL 187
           V+F+ +++L  N  +L DY+     K L +++     R   F+N+  + + + +Q+ +L
Sbjct: 126 VLFTHKEDL--NGGSLMDYMHDSDNKALSKLVAACGGRICAFNNRA-EGSNQDDQVKEL 181

>pdb|2XTP|A Chain A, Crystal Structure Of Nucleotide-Free Human Gimap2, Amino Acid Residues 1-260 Length = 260

Iteration: 1
 Score = 74.7 bits (182), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 50/179 (27%), Positives = 95/179 (53%), Gaps = 18/179 (10%)
Query: 22  VVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFD 81
           ++LVG TG GKSA GNSIL ++AF+S+  S  +T TC   +    + ++V +IDTP  F 
Sbjct: 25  IILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIV-IIDTPDXFS 83
Query: 82  FSAGSE--FDEI-----------HAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMI 128
           +    E  + E+           H  L+V  +  R++ +++     ++ +FG++   + I
Sbjct: 84  WKDHCEALYKEVQRCYLLSAPGPHVLLLVTQL-GRYTSQDQQAAQRVKEIFGEDAXGHTI 142
Query: 129 VVFSGRDELEANDETLEDYLGRECPKPLKEILHLFDNRCVLFDNKTKDAAKRTEQIGKL 187
           V+F+ +++L  N  +L DY      K L +++     R   F+N+  + + + +Q+ +L
Sbjct: 143 VLFTHKEDL--NGGSLXDYXHDSDNKALSKLVAACGGRICAFNNRA-EGSNQDDQVKEL 198

>pdb|1WDT|A Chain A, Crystal Structure Of Ttk003000868 From Thermus Thermophilus Hb8 Length = 665

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 20/92 (21%)
Query: 19 VRTVVLVGHTGNGKSATGNSILGRRAFKSR-------ASSSGVTSTCEMHRTVLKDGQV- 70
          +RTV LVGH G+GK+    ++L +   K R        +++  T   ++HRT ++ G   
Sbjct: 9  IRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAP 68
Query: 71 -------VNVIDTPGLFDFSAGSEFDEIHAAL 95
                 V ++D PG  DF       EI  AL
Sbjct: 69 LLFRGHRVFLLDAPGYGDF-----VGEIRGAL 95

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	240
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	3e-43
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	2e-42
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	3e-41
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	3e-41
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	2e-39
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	3e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-08
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	2e-04

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A Length = 260

 Score =  145 bits (368), Expect = 3e-43
 Identities = 56/257 (21%), Positives = 111/257 (43%), Gaps = 26/257 (10%)

Query: 4   SRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRT 63
           S      +    S     ++LVG TG GKSA GNSIL ++AF+S+  S  +T TC   + 
Sbjct: 7   SHWGPHAKGQCASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQG 66

Query: 64  VLKDGQVVNVIDTPGLFDFSAGSEF-------------DEIHAALVVFSVRSRFSQEEEA 110
                + + +IDTP +F +    E                 H  L+V  +  R++ +++ 
Sbjct: 67  SW-GNREIVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQL-GRYTSQDQQ 124

Query: 111 TLHSLQTLFGKNCFDYMIVVFSGRDELEANDETLEDYLGRECPKPLKEILHLFDNRCVLF 170
               ++ +FG++   + IV+F+ +++L     +L DY+     K L +++     R   F
Sbjct: 125 AAQRVKEIFGEDAMGHTIVLFTHKEDLN--GGSLMDYMHDSDNKALSKLVAACGGRICAF 182

Query: 171 DNKTKDAAKRTEQIGKLRSL--QLAREHAAR------LKVEVTAKSTQMKSDDKIHKLRE 222
           +N+ + + +  +Q+ +L      L  E            +   +K   + SD+++ + ++
Sbjct: 183 NNRAEGSNQD-DQVKELMDCIEDLLMEKNGDHYTNGLYSLIQRSKCGPVGSDERVKEFKQ 241

Query: 223 DLERAQRENEGLHKGVE 239
            L +            E
Sbjct: 242 SLIKYMETQRSYTALAE 258

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* Length = 262

 Score =  144 bits (364), Expect = 2e-42
 Identities = 35/180 (19%), Positives = 69/180 (38%), Gaps = 14/180 (7%)

Query: 11  ELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQV 70
           +L        TV+++G  G GKS+T NS++G +  +     +       + RT+   G  
Sbjct: 28  KLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTM--GGFT 85

Query: 71  VNVIDTPGLFDFSAGSE-----------FDEIHAALVVFSV-RSRFSQEEEATLHSLQTL 118
           +N+IDTPGL +    +               I   L V  +      + ++  + ++   
Sbjct: 86  INIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQT 145

Query: 119 FGKNCFDYMIVVFSGRDELEANDETLEDYLGRECPKPLKEILHLFDNRCVLFDNKTKDAA 178
           FGK  +   ++V +       ++ + E +  +     LK I      R   F++      
Sbjct: 146 FGKEIWCKTLLVLTHAQFSPPDELSYETFSSKRSDSLLKTIRAGSKMRKQEFEDSAIAVV 205

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} Length = 239

 Score =  140 bits (353), Expect = 3e-41
 Identities = 62/232 (26%), Positives = 109/232 (46%), Gaps = 32/232 (13%)

Query: 14  SPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNV 73
            P N    +VLVG TG GKSATGNSILGR+ F S  ++  +T  CE   +       + V
Sbjct: 24  EPRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSW-KETELVV 82

Query: 74  IDTPGLFDFSAGSEF-------------DEIHAALVVFSVRSRFSQEEEATLHSLQTLFG 120
           +DTPG+FD    +                  HA L+V  +  R+++EE      +  +FG
Sbjct: 83  VDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPL-GRYTEEEHKATEKILKMFG 141

Query: 121 KNCFDYMIVVFSGRDELEANDETLEDYLGRECPKPLKEILHLFDNRCVLFDNKTKDAAKR 180
           +    +MI++F+ +D+L   D  L DYL RE P+ +++++ +F +R    +NK   A + 
Sbjct: 142 ERARSFMILIFTRKDDLG--DTNLHDYL-REAPEDIQDLMDIFGDRYCALNNKATGAEQE 198

Query: 181 TEQIGKLRSLQLAREHAARLKVEVTAKSTQMK--SDDKIHKLREDLERAQRE 230
             Q  +L              ++   +  +    ++    +  E++++  + 
Sbjct: 199 A-QRAQLLG-----------LIQRVVRENKEGCYTNRMYQRAEEEIQKQTQA 238

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* Length = 270

 Score =  136 bits (344), Expect = 2e-39
 Identities = 32/170 (18%), Positives = 63/170 (37%), Gaps = 15/170 (8%)

Query: 21  TVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLF 80
           T++++G  G GKS+T NSI+G R        S       + R+    G  +N+IDTPGL 
Sbjct: 41  TILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSR--AGFTLNIIDTPGLI 98

Query: 81  DFSAGSE-----------FDEIHAALVVFSV-RSRFSQEEEATLHSLQTLFGKNCFDYMI 128
           +    ++              I   L V  +   R    ++    ++   FGK  ++  I
Sbjct: 99  EGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAI 158

Query: 129 VVFSGRDELEANDETLEDYLGRECPKPLKEILHLFDNRCVLFDNKTKDAA 178
           V  +       +    +++   +  + L +++    +             
Sbjct: 159 VALTHAQFSPPDGLPYDEFF-SKRSEALLQVVRSGASLKKDAQASDIPVV 207

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* Length = 413

 Score = 52.8 bits (126), Expect = 3e-08
 Identities = 29/145 (20%), Positives = 50/145 (34%), Gaps = 13/145 (8%)

Query: 4   SRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTC-EMHR 62
           S I D   L    + V  V + G TG+GKS+  N++ G    +  A+ +GV     E H 
Sbjct: 56  SAISD--ALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHP 113

Query: 63  TVLKDGQVVNVIDTPGLFDFSAG-----SEFDEIHAALVVFSVRSRFSQEEEATLHSLQT 117
               +   V   D PG+   +        +         +    +RF + +     ++  
Sbjct: 114 YKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISM 173

Query: 118 LFGKNCFDYMIVVFSGRDELEANDE 142
              K        V +  D    N+ 
Sbjct: 174 -MKKEF----YFVRTKVDSDITNEA 193

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.9 bits (126), Expect = 3e-08
 Identities = 34/268 (12%), Positives = 71/268 (26%), Gaps = 88/268 (32%)

Query: 10  CELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQ 69
            EL  P+  V   ++ G  G+GK     + +        A              V    +
Sbjct: 145 LEL-RPAKNV---LIDGVLGSGK-----TWV--------ALD------------VCLSYK 175

Query: 70  VVNVIDTPGLFDFSAGSEFDEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIV 129
           V          DF              +F +  +     E  L  LQ L  +   ++   
Sbjct: 176 VQCK------MDFK-------------IFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSR 216

Query: 130 V---FSGRDELEANDETLEDYL-GRECPKPL--------KEILHLFDNRC-VLFDNKTKD 176
                + +  + +    L   L  +     L         +  + F+  C +L    T+ 
Sbjct: 217 SDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILL--TTRF 274

Query: 177 AAKRTEQIGKLRSLQLAREHAARL-----KVEVTAKSTQMKSDD------KIH------- 218
               T+ +    +  ++ +H +          +  K    +  D        +       
Sbjct: 275 KQV-TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII 333

Query: 219 --KLREDLERAQR----ENEGLHKGVEI 240
              +R+ L           + L   +E 
Sbjct: 334 AESIRDGLATWDNWKHVNCDKLTTIIES 361

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 Length = 307

 Score = 40.6 bits (96), Expect = 2e-04
 Identities = 20/76 (26%), Positives = 27/76 (35%), Gaps = 17/76 (22%)

Query: 20  RTVVLVGHTGNGKSATGNSILGRRAFK----SRASSSGV--TSTCEMHRTVLKDGQVVNV 73
           +T V  G +G GKS+  N+I      +    S     G   T   E+       G    V
Sbjct: 174 KTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIH--TSGGL---V 228

Query: 74  IDTPGLFDFSAGSEFD 89
            DTPG       S  +
Sbjct: 229 ADTPGF------SSLE 238

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	240
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.93
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.91
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.89
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	99.83
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	99.8
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.77
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	99.76
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.76
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.74
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.74
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.73
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.72
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.71
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.71
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	99.7
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	99.7
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	99.7
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	99.7
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	99.7
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.7
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	99.7
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	99.7
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	99.69
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	99.69
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	99.69
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	99.69
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.69
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.69
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	99.69
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	99.68
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	99.68
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	99.68
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	99.68
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	99.68
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	99.68
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	99.68
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.68
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	99.68
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.68
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	99.67
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	99.67
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.67
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.67
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	99.67
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.67
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	99.67
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	99.67
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.66
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	99.66
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.66
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	99.66
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.66
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	99.66
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	99.66
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	99.66
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	99.66
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	99.66
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	99.66
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.66
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	99.66
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	99.66
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	99.65
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	99.65
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.65
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	99.65
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	99.65
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.65
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.65
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	99.65
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.65
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	99.65
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	99.65
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.65
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	99.64
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	99.64
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	99.64
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.64
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	99.64
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	99.64
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	99.63
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.63
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.63
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.63
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	99.63
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	99.63
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	99.63
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	99.63
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	99.63
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	99.63
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.63
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	99.63
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.63
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	99.62
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	99.62
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	99.62
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	99.62
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.62
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	99.62
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	99.62
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	99.62
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	99.61
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	99.61
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	99.61
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	99.61
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	99.61
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.6
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.6
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	99.6
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	99.6
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	99.6
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.6
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	99.6
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.59
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.59
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	99.59
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	99.59
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	99.59
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.59
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.58
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	99.58
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.58
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.58
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	99.58
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.58
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.58
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	99.58
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.58
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.58
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	99.58
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.58
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.57
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.57
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.57
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.57
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	99.57
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	99.57
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	99.56
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	99.56
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.56
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.56
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.55
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	99.54
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.54
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	99.54
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	99.54
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	99.53
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.53
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.52
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.52
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.52
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.51
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	99.51
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.51
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.51
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	99.51
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.5
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.5
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.5
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	99.5
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.5
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	99.5
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.24
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.49
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.49
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.49
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	99.48
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	99.48
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	99.47
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.47
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	99.47
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	99.47
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	99.47
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.47
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.47
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.47
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.46
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.44
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	99.43
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	99.43
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.43
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	99.43
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.43
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.43
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.41
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	99.39
1wxq_A	397	GTP-binding protein; structural genomics, riken st	99.38
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	99.38
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.38
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	99.38
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.37
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.37
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	99.36
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.22
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	99.13
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	99.13
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	99.11
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	99.1
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	99.1
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	99.09
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	99.08
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	99.08
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	99.05
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	99.03
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	99.02
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	99.0
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	98.98
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	98.96
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	98.96
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	98.93
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	98.93
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	98.92
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	98.92
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	98.92
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	98.88
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	98.88
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	98.88
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	98.88
1g6h_A	257	High-affinity branched-chain amino acid transport	98.87
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.87
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	98.87
1b0u_A	262	Histidine permease; ABC transporter, transport pro	98.87
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	98.87
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	98.86
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	98.86
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	98.84
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	98.84
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	98.84
1ji0_A	240	ABC transporter; ATP binding protein, structural g	98.84
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	98.83
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	98.83
1sgw_A	214	Putative ABC transporter; structural genomics, P p	98.82
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	98.81
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	98.79
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	98.77
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	98.77
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	98.75
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	98.75
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	98.75
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	98.74
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	98.74
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	98.74
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.73
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	98.73
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	98.73
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	98.72
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	98.72
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	98.71
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	98.71
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	98.7
2og2_A	359	Putative signal recognition particle receptor; nuc	98.68
2ghi_A	260	Transport protein; multidrug resistance protein, M	98.68
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	98.67
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	98.65
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	98.64
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	98.61
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	98.61
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	98.6
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	98.59
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	98.59
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	98.57
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	98.54
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	98.54
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	98.53
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	98.53
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	98.5
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	98.5
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	98.5
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	98.45
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	98.45
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	98.45
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	98.44
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	98.44
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	98.44
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	98.44
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	98.42
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	98.41
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	98.4
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	98.38
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	98.37
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	98.36
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	98.36
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	98.34
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	98.33
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	98.31
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	98.26
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	98.23
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	98.23
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	98.21
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	98.2
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	98.19
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	98.19
2eyu_A	261	Twitching motility protein PILT; pilus retraction	98.19
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	98.18
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	98.17
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	98.16
2hf9_A	226	Probable hydrogenase nickel incorporation protein	98.16
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	98.15
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	98.15
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	98.14
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	98.13
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	98.1
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	98.1
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	98.09
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	98.08
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	98.08
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	98.08
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	98.08
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	98.06
2xxa_A	433	Signal recognition particle protein; protein trans	98.06
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	98.05
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	98.05
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	98.04
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	98.02
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	98.01
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	98.01
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	98.0
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	97.98
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	97.96
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	97.95
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	97.95
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	97.95
4ido_A	457	Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE	97.92
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	97.92
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	97.91
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	97.89
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	97.89
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	97.87
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	97.85
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	97.84
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	97.82
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	97.82
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	97.81
4a74_A	231	DNA repair and recombination protein RADA; hydrola	97.79
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	97.79
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	97.78
3kta_A	182	Chromosome segregation protein SMC; structural mai	97.78
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	97.76
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	97.76
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	97.76
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	97.72
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	97.71
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	97.71
2ewv_A	372	Twitching motility protein PILT; pilus retraction	97.69
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	97.68
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	97.68
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	97.66
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	97.66
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	97.65
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	97.64
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	97.63
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	97.62
1p9r_A	418	General secretion pathway protein E; bacterial typ	97.59
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	97.58
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	97.57
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	97.54
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	97.52
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	97.52
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	97.52
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	97.51
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	97.49
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	97.46
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	97.46
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	97.45
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	97.44
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	97.44
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	97.41
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	97.41
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	97.4
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	97.38
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	97.38
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	97.38
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	97.37
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	97.37
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	97.36
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	97.31
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	97.29
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	97.28
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	97.26
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	97.24
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	97.23
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	97.22
2cvh_A	220	DNA repair and recombination protein RADB; filamen	97.21
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	97.2
1e69_A	322	Chromosome segregation SMC protein; structural mai	97.17
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	97.17
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	97.15
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	97.12
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	97.12
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	97.1
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	97.1
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	97.1
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	97.09
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	97.09
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	97.05
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	97.04
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	97.04
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	97.02
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	97.02
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	97.02
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	97.02
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	97.01
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	97.01
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	96.99
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	96.99
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	96.98
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	96.98
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	96.97
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	96.96
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	96.94
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	96.93
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	96.92
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	96.92
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	96.91
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	96.91
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	96.88
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	96.88
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	96.87
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	96.87
3ice_A	422	Transcription termination factor RHO; transcriptio	96.86
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	96.86
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	96.84
1via_A	175	Shikimate kinase; structural genomics, transferase	96.83
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	96.82
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	96.82
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	96.81
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	96.8
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	96.79
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	96.79
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	96.78
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	96.76
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	96.75
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	96.74
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	96.73
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	96.73
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	96.73
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	96.72
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	96.69
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	96.69
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	96.67
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	96.67
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	96.66
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	96.65
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	96.65
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	96.65
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	96.63
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	96.62
3end_A	307	Light-independent protochlorophyllide reductase ir	96.62
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	96.61
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	96.61
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	96.61
2vli_A	183	Antibiotic resistance protein; transferase, tunica	96.61
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	96.61
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	96.6
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	96.6
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	96.6
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	96.59
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	96.56
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	96.54
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	96.53
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	96.52
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	96.52
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	96.47
4ad8_A	517	DNA repair protein RECN; DNA binding protein, ATPa	96.46
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	96.45
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	96.43
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	96.42
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	96.42
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	96.42
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	96.41
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	96.38
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	96.37
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	96.35
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	96.33
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	96.33
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	96.33
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	96.31
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	96.28
3bos_A	242	Putative DNA replication factor; P-loop containing	96.27
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	96.25
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	96.25
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	96.24
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	96.24
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	96.24
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	96.24
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	96.22
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	96.16
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	96.15
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	96.15
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	96.14
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	96.1
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	96.09
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	96.04
2ius_A	512	DNA translocase FTSK; nucleotide-binding, chromoso	96.02
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	96.0
1tue_A	212	Replication protein E1; helicase, replication, E1E	95.98
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	95.97
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	95.92
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	95.89
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	95.85
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	95.83

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.93  E-value=7.5e-25  Score=171.42  Aligned_cols=168  Identities=34%  Similarity=0.627  Sum_probs=117.4

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC-------
Q 036363           16 SNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF-------   88 (240)
Q Consensus        16 ~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~-------   88 (240)
                      .....+|+|+|++|+|||||+|+|+|...+.++....+.|..+......+ .+..+.||||||+.+.......       
T Consensus        26 ~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~i~liDTpG~~~~~~~~~~~~~~~~~  104 (239)
T 3lxx_A           26 RNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSW-KETELVVVDTPGIFDTEVPNAETSKEIIR  104 (239)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEE-TTEEEEEEECCSCC-----CHHHHHHHHH
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEe-CCceEEEEECCCccCCCCCHHHHHHHHHH
Confidence            34558999999999999999999999887666655456677777777777 8889999999999876543221       


Q ss_pred             ------CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCCcccHHHHhcccCCchHHHHHHH
Q 036363           89 ------DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEANDETLEDYLGRECPKPLKEILHL  162 (240)
Q Consensus        89 ------~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (240)
                            +++|++|+|++++ +++..+...+..+.+.++.....|+++|+||+|.+...  .+++++.. ....++.+++.
T Consensus       105 ~~~~~~~~~~~~l~v~d~~-~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~--~~~~~i~~-~~~~l~~l~~~  180 (239)
T 3lxx_A          105 CILLTSPGPHALLLVVPLG-RYTEEEHKATEKILKMFGERARSFMILIFTRKDDLGDT--NLHDYLRE-APEDIQDLMDI  180 (239)
T ss_dssp             HHHHTTTCCSEEEEEEETT-CCSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC---------------CHHHHHHHHH
T ss_pred             HHHhcCCCCcEEEEEeeCC-CCCHHHHHHHHHHHHHhhhhccceEEEEEeCCccCCcc--cHHHHHHh-chHHHHHHHHH
Confidence                  6789999999998 77778888888888887765556899999999987654  67777766 35678999999


Q ss_pred             hCCcEEEEeCCCcchhhhHHHHHHHHH
Q 036363          163 FDNRCVLFDNKTKDAAKRTEQIGKLRS  189 (240)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~ll~  189 (240)
                      |+.+|++|++..... ....++.+|+.
T Consensus       181 ~~~~~~~~~~~~~~~-~~~~~v~~ll~  206 (239)
T 3lxx_A          181 FGDRYCALNNKATGA-EQEAQRAQLLG  206 (239)
T ss_dssp             HSSSEEECCTTCCHH-HHHHHHHHHHH
T ss_pred             cCCEEEEEECCCCcc-ccHHHHHHHHH
Confidence            999999999886433 33456677776

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.89  E-value=2.1e-21  Score=153.67  Aligned_cols=150  Identities=30%  Similarity=0.529  Sum_probs=115.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCc----------
Q 036363           18 GVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSE----------   87 (240)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~----------   87 (240)
                      ...+|+|+|++|+|||||+|+|++...+.....+.++|..+......+ .+..+.+|||||+.++.....          
T Consensus        21 ~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~   99 (260)
T 2xtp_A           21 SELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSW-GNREIVIIDTPDMFSWKDHCEALYKEVQRCY   99 (260)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEE-TTEEEEEEECCGGGGSSCCCHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEe-CCCEEEEEECcCCCCCCCCHHHHHHHHHHHH
Confidence            458999999999999999999999876555444344566666666677 888999999999987754321          


Q ss_pred             ---CCCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEe-CCCCCCCCcccHHHHhcccCCchHHHHHHHh
Q 036363           88 ---FDEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFS-GRDELEANDETLEDYLGRECPKPLKEILHLF  163 (240)
Q Consensus        88 ---~~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~-~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (240)
                         .+.+|++++|++++ +++..+...+..+.+.++.....|+++|+| |+|... .  .+..++.......+..++..+
T Consensus       100 ~~~~~~~d~il~V~d~~-~~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~-~--~~~~~i~~~~~~~~~~~~~~~  175 (260)
T 2xtp_A          100 LLSAPGPHVLLLVTQLG-RYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNG-G--SLMDYMHDSDNKALSKLVAAC  175 (260)
T ss_dssp             HHHTTCCSEEEEEEETT-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTT-C--CHHHHHHHCCCHHHHHHHHHT
T ss_pred             HhcCCCCcEEEEEEeCC-CCCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCC-c--cHHHHHHhcchHHHHHHHHHh
Confidence               17899999999998 588888888899988887654456667766 999653 2  577777664556678889999


Q ss_pred             CCcEEEEeC
Q 036363          164 DNRCVLFDN  172 (240)
Q Consensus       164 ~~~~~~~~~  172 (240)
                      +.+++.|+.
T Consensus       176 ~~~~~~~~~  184 (260)
T 2xtp_A          176 GGRICAFNN  184 (260)
T ss_dssp             TTCEEECCT
T ss_pred             CCeEEEecC
Confidence            988876655

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=99.83  E-value=1.4e-19  Score=143.27  Aligned_cols=144  Identities=20%  Similarity=0.290  Sum_probs=107.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC---------
Q 036363           18 GVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF---------   88 (240)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~---------   88 (240)
                      ...+|+++|++|+|||||+|+|++........ ..+.|.........+ .+..+.+|||||+.++......         
T Consensus        35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~-~~~~t~~~~~~~~~~-~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l  112 (262)
T 3def_A           35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSP-FQAEGLRPVMVSRTM-GGFTINIIDTPGLVEAGYVNHQALELIKGFL  112 (262)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCS-SCC-CCCCEEEEEEE-TTEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCCcccCC-CCCcceeeEEEEEEE-CCeeEEEEECCCCCCcccchHHHHHHHHHHH
Confidence            34899999999999999999999977533322 234455555555566 7889999999999887644332         


Q ss_pred             --CCceEEEEEEECCC-CCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCCcccHHHHhcccCCchHHHHHHHhC
Q 036363           89 --DEIHAALVVFSVRS-RFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEANDETLEDYLGRECPKPLKEILHLFD  164 (240)
Q Consensus        89 --~~~~~~l~v~~~~~-~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (240)
                        ..+|++++|++++. +++..+..++..+...++.....|+++|+||+|........+++++.. ....++.++..+.
T Consensus       113 ~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~e~~~~~-~~~~l~~~i~~~~  190 (262)
T 3def_A          113 VNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELSYETFSSK-RSDSLLKTIRAGS  190 (262)
T ss_dssp             TTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCSTTCCHHHHHHH-HHHHHHHHHHHHH
T ss_pred             hcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCCCccHHHHHHh-hhHHHHHHHHHHh
Confidence              38899999998873 577777899999999988766678999999999765555678888765 2344566665543

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=99.80  E-value=6.3e-19  Score=140.17  Aligned_cols=141  Identities=22%  Similarity=0.341  Sum_probs=101.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC---------
Q 036363           18 GVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF---------   88 (240)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~---------   88 (240)
                      ...+|+++|.+|+|||||+|+|++......+. ..+.|.......... .+..+.+|||||+.++......         
T Consensus        38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~-~~~~t~~~~~~~~~~-~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~  115 (270)
T 1h65_A           38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISP-FQSEGPRPVMVSRSR-AGFTLNIIDTPGLIEGGYINDMALNIIKSFL  115 (270)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCS-SSCCCSSCEEEEEEE-TTEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCcccccC-CCCcceeeEEEEEee-CCeEEEEEECCCCCCCccchHHHHHHHHHHh
Confidence            35899999999999999999999977533322 234444444444555 7788999999999876543221         


Q ss_pred             --CCceEEEEEEECCC-CCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCCcccHHHHhcccCCchHHHHHH
Q 036363           89 --DEIHAALVVFSVRS-RFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEANDETLEDYLGRECPKPLKEILH  161 (240)
Q Consensus        89 --~~~~~~l~v~~~~~-~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (240)
                        ..+|+++||++++. +++..+..++..+...++...+.|+++|+||+|...+....+++++.. ....++..+.
T Consensus       116 ~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~~~~~~~~~~~-~~~~l~~~~~  190 (270)
T 1h65_A          116 LDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYDEFFSK-RSEALLQVVR  190 (270)
T ss_dssp             TTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCCHHHHHHH-HHHHHHHHHH
T ss_pred             hcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcCCCCHHHHHHH-HHHHHHHHHH
Confidence              47999999998873 577777888999988888665578999999999765544467777654 2333444443

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.77  E-value=1.9e-17  Score=127.70  Aligned_cols=118  Identities=12%  Similarity=0.178  Sum_probs=85.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--------
Q 036363           17 NGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--------   88 (240)
Q Consensus        17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--------   88 (240)
                      ....+|+++|.+|+|||||+|+|++...........+.|............+..+.+|||||+.+.......        
T Consensus        27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~  106 (223)
T 4dhe_A           27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLL  106 (223)
T ss_dssp             CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHH
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHH
Confidence            345899999999999999999999986322222234556555555544225678999999998765332221        


Q ss_pred             -------CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363           89 -------DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        89 -------~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~  139 (240)
                             ..+|++++|+|++++++..+..++..+..     ...|+++|+||+|....
T Consensus       107 ~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~-----~~~p~i~v~nK~Dl~~~  159 (223)
T 4dhe_A          107 SSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAP-----TGKPIHSLLTKCDKLTR  159 (223)
T ss_dssp             HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGG-----GCCCEEEEEECGGGSCH
T ss_pred             HHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHh-----cCCCEEEEEeccccCCh
Confidence                   55899999999998888887777777653     23679999999997654

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=99.76  E-value=9.3e-17  Score=119.41  Aligned_cols=144  Identities=17%  Similarity=0.140  Sum_probs=92.1

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCc
Q 036363           16 SNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEI   91 (240)
Q Consensus        16 ~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~   91 (240)
                      .....+|+++|++|+|||||+|+|++........  .+.+.........+ ++  ..+.+|||||...+......  ..+
T Consensus         6 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~   82 (181)
T 3tw8_B            6 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYI--TTIGVDFKIRTVEI-NGEKVKLQIWDTAGQERFRTITSTYYRGT   82 (181)
T ss_dssp             CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCT--TTBSEEEEEEEEEE-TTEEEEEEEEEETTGGGCSSCCGGGGTTC
T ss_pred             cCcceEEEEECCCCCCHHHHHHHHhcCCCCCccC--CCceeEEEEEEEEE-CCEEEEEEEEcCCCchhhhhhHHHHhccC
Confidence            3445899999999999999999999876543222  33333344444444 55  57889999998877655554  889


Q ss_pred             eEEEEEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCCcccHHHHhcccCCchHHHHHHHhCCcEEEE
Q 036363           92 HAALVVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELEANDETLEDYLGRECPKPLKEILHLFDNRCVLF  170 (240)
Q Consensus        92 ~~~l~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (240)
                      |++++|+|++++.+... ..++..+.....   ..|+++|+||+|.........         .....+....+..++..
T Consensus        83 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~~~~~~~---------~~~~~~~~~~~~~~~~~  150 (181)
T 3tw8_B           83 HGVIVVYDVTSAESFVNVKRWLHEINQNCD---DVCRILVGNKNDDPERKVVET---------EDAYKFAGQMGIQLFET  150 (181)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHHHHCT---TSEEEEEEECTTCGGGCCSCH---------HHHHHHHHHHTCCEEEC
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCCEEEEEECCCCchhcccCH---------HHHHHHHHHcCCeEEEE
Confidence            99999999986544444 234444444332   368999999999554321111         12234444556666666


Q ss_pred             eCCC
Q 036363          171 DNKT  174 (240)
Q Consensus       171 ~~~~  174 (240)
                      +...
T Consensus       151 Sa~~  154 (181)
T 3tw8_B          151 SAKE  154 (181)
T ss_dssp             BTTT
T ss_pred             ECCC
Confidence            6553

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.76  E-value=2.7e-17  Score=122.14  Aligned_cols=113  Identities=18%  Similarity=0.267  Sum_probs=83.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEEEE
Q 036363           19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAALV   96 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~   96 (240)
                      ..+|+++|++|+|||||++++++........  .+.+.........+ ++..+.+|||||+..+......  ..+|++++
T Consensus         8 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   84 (178)
T 2lkc_A            8 PPVVTIMGHVDHGKTTLLDAIRHSKVTEQEA--GGITQHIGAYQVTV-NDKKITFLDTPGHEAFTTMRARGAQVTDIVIL   84 (178)
T ss_dssp             CCEEEEESCTTTTHHHHHHHHHTTCSSCSSC--CSSSTTCCCCEEEE-TTEEEEESCCCSSSSSSCSCCSSCCCCCEEEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCccccCCC--CceeEeeeEEEEEe-CCceEEEEECCCCHHHHHHHHHHHhhCCEEEE
Confidence            3899999999999999999999876543322  22233333344455 7788999999999887665544  88999999


Q ss_pred             EEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363           97 VFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        97 v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~  139 (240)
                      |+|++++........+..+.     ....|+++|+||+|....
T Consensus        85 v~d~~~~~~~~~~~~l~~~~-----~~~~p~ilv~nK~Dl~~~  122 (178)
T 2lkc_A           85 VVAADDGVMPQTVEAINHAK-----AANVPIIVAINKMDKPEA  122 (178)
T ss_dssp             EEETTCCCCHHHHHHHHHHG-----GGSCCEEEEEETTTSSCS
T ss_pred             EEECCCCCcHHHHHHHHHHH-----hCCCCEEEEEECccCCcC
Confidence            99998777776666655442     123679999999996553

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.74  E-value=1.8e-15  Score=117.12  Aligned_cols=119  Identities=16%  Similarity=0.129  Sum_probs=77.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCc----------
Q 036363           18 GVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSE----------   87 (240)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~----------   87 (240)
                      ...+|+++|++|+|||||+|+|++.......  ..+.|.........+ .+..+.+|||||+.+......          
T Consensus        28 ~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~--~~~~t~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~  104 (228)
T 2qu8_A           28 HKKTIILSGAPNVGKSSFMNIVSRANVDVQS--YSFTTKNLYVGHFDH-KLNKYQIIDTPGLLDRAFENRNTIEMTTITA  104 (228)
T ss_dssp             TSEEEEEECSTTSSHHHHHHHHTTTCEEEEC--C-----CEEEEEEEE-TTEEEEEEECTTTTTSCGGGCCHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCccCC--CCCcceeeeeeeeec-CCCeEEEEECCCCcCcccchhhhHHHHHHHH
Confidence            4589999999999999999999998653222  234455555555555 677899999999976432221          


Q ss_pred             -CCCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363           88 -FDEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        88 -~~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~  139 (240)
                       ...+|++++|+|++++.+......+.++..........|+++|+||+|....
T Consensus       105 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~  157 (228)
T 2qu8_A          105 LAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNM  157 (228)
T ss_dssp             HHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC-
T ss_pred             hhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCc
Confidence             1677999999999976553322222333322222123679999999996654

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.74  E-value=3.7e-17  Score=130.22  Aligned_cols=145  Identities=18%  Similarity=0.251  Sum_probs=88.6

Q ss_pred             CCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCC----CCCcceeEEEEEEEEe-CC--cEEEEEeCCCCCCCCCCCc
Q 036363           15 PSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRAS----SSGVTSTCEMHRTVLK-DG--QVVNVIDTPGLFDFSAGSE   87 (240)
Q Consensus        15 ~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~----~~~~t~~~~~~~~~~~-~~--~~~~l~DtpG~~~~~~~~~   87 (240)
                      ..+...+|+++|.+|+|||||+|+|++...+.....    ....|........... ++  ..+.+|||||+.++.....
T Consensus         4 ~~g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~   83 (274)
T 3t5d_A            4 GSGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSN   83 (274)
T ss_dssp             ---CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTT
T ss_pred             cCccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchh
Confidence            345568999999999999999999998876554321    0122222222322221 33  3789999999976643321


Q ss_pred             C-----------------------------CCceEEEEEEECC-CCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363           88 F-----------------------------DEIHAALVVFSVR-SRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDEL  137 (240)
Q Consensus        88 ~-----------------------------~~~~~~l~v~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~  137 (240)
                      .                             ..+|+++|+++.+ .++...+...++.+..      ..|+++|+||+|.+
T Consensus        84 ~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~------~~pvi~V~nK~D~~  157 (274)
T 3t5d_A           84 CWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE------KVNIIPLIAKADTL  157 (274)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT------TSCEEEEESSGGGS
T ss_pred             hHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc------cCCEEEEEeccCCC
Confidence            1                             3578999999776 4678888787777643      36799999999976


Q ss_pred             CCCcccHHHHhcccCCchHHHHHHHhCCcEEEEeC
Q 036363          138 EANDETLEDYLGRECPKPLKEILHLFDNRCVLFDN  172 (240)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (240)
                      ...  .+..+...     +...+...+.+++.++.
T Consensus       158 ~~~--e~~~~~~~-----i~~~l~~~~i~v~~~sa  185 (274)
T 3t5d_A          158 TPE--ECQQFKKQ-----IMKEIQEHKIKIYEFPE  185 (274)
T ss_dssp             CHH--HHHHHHHH-----HHHHHHHTTCCCCCC--
T ss_pred             CHH--HHHHHHHH-----HHHHHHHcCCeEEcCCC
Confidence            542  33333333     45556666666665654

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.73  E-value=5.4e-17  Score=130.69  Aligned_cols=115  Identities=22%  Similarity=0.234  Sum_probs=82.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCc----------CC
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSE----------FD   89 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~----------~~   89 (240)
                      .+|+++|++|+|||||+|+|+|........ ..++|.........+ ++..+.+|||||+.++.....          ..
T Consensus         8 g~V~ivG~~nvGKSTLln~l~g~~~~ivs~-~~~tTr~~i~~i~~~-~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~   85 (301)
T 1wf3_A            8 GFVAIVGKPNVGKSTLLNNLLGVKVAPISP-RPQTTRKRLRGILTE-GRRQIVFVDTPGLHKPMDALGEFMDQEVYEALA   85 (301)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSCCSCCCS-SSCCCCSCEEEEEEE-TTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCceeeecC-CCCceeEEEEEEEEe-CCcEEEEecCccccchhhHHHHHHHHHHHHHHh
Confidence            689999999999999999999987533222 123333333233344 778999999999987543111          18


Q ss_pred             CceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363           90 EIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        90 ~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~  139 (240)
                      .+|++++|+|++++++..+...++.+...++   ..|+++|+||+|....
T Consensus        86 ~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~---~~p~ilV~NK~Dl~~~  132 (301)
T 1wf3_A           86 DVNAVVWVVDLRHPPTPEDELVARALKPLVG---KVPILLVGNKLDAAKY  132 (301)
T ss_dssp             SCSEEEEEEETTSCCCHHHHHHHHHHGGGTT---TSCEEEEEECGGGCSS
T ss_pred             cCCEEEEEEECCCCCChHHHHHHHHHHhhcC---CCCEEEEEECcccCCc
Confidence            8999999999998888887666666654321   3679999999996644

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.72  E-value=1.5e-16  Score=128.62  Aligned_cols=115  Identities=20%  Similarity=0.297  Sum_probs=85.0

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeC-CcEEEEEeCCCCCCCCCCCcC------
Q 036363           16 SNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKD-GQVVNVIDTPGLFDFSAGSEF------   88 (240)
Q Consensus        16 ~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~------   88 (240)
                      +++.-.|+++|.+|+|||||+|+|+|....... ...++|.......... . +..+.+|||||+.++......      
T Consensus         7 ~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s-~~~~tT~~~~~~~~~~-~~~~~i~lvDTPG~~~~~~~~~l~~~~~~   84 (308)
T 3iev_A            7 HMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIIS-PKAGTTRMRVLGVKNI-PNEAQIIFLDTPGIYEPKKSDVLGHSMVE   84 (308)
T ss_dssp             CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCC-SSSCCCCSCEEEEEEE-TTTEEEEEEECCCCCCCCTTCHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCcHHHHHHHHhCCCccccC-CCCCceeeEEEEEEec-CCCCeEEEEECcCCCccccchhHHHHHHH
Confidence            334579999999999999999999998754322 2234455444444455 6 889999999999876521111      


Q ss_pred             ------CCceEEEEEEECCCCCCHHHHHH-HHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363           89 ------DEIHAALVVFSVRSRFSQEEEAT-LHSLQTLFGKNCFDYMIVVFSGRDEL  137 (240)
Q Consensus        89 ------~~~~~~l~v~~~~~~~~~~~~~~-l~~l~~~~~~~~~~~~i~v~~~~D~~  137 (240)
                            ..+|++++|+|++++.+..+... +..+..     ...|+++|+||+|..
T Consensus        85 ~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~-----~~~pvilV~NK~Dl~  135 (308)
T 3iev_A           85 IAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP-----LNKPVIVVINKIDKI  135 (308)
T ss_dssp             HHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG-----GCCCEEEEEECGGGS
T ss_pred             HHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh-----cCCCEEEEEECccCC
Confidence                  78999999999998888888766 555532     236799999999976

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.71  E-value=6.9e-16  Score=116.29  Aligned_cols=114  Identities=21%  Similarity=0.297  Sum_probs=75.9

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--------
Q 036363           17 NGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--------   88 (240)
Q Consensus        17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--------   88 (240)
                      ....+|+++|++|+|||||+|+|++...........+.|.......  .  +..+.+|||||+.+.......        
T Consensus        21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~--~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~   96 (195)
T 1svi_A           21 GGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYI--I--NDELHFVDVPGYGFAKVSKSEREAWGRMI   96 (195)
T ss_dssp             SCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEE--E--TTTEEEEECCCBCCCSSCHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEE--E--CCcEEEEECCCCCccccCHHHHHHHHHHH
Confidence            3458999999999999999999998763322223334444443322  2  346899999997665432110        


Q ss_pred             -------CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363           89 -------DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        89 -------~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~  139 (240)
                             ..+|++++|+|++++.+..+...+..+..     ...|+++|+||+|....
T Consensus        97 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~-----~~~p~i~v~nK~Dl~~~  149 (195)
T 1svi_A           97 ETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKY-----YGIPVIVIATKADKIPK  149 (195)
T ss_dssp             HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH-----TTCCEEEEEECGGGSCG
T ss_pred             HHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHH-----cCCCEEEEEECcccCCh
Confidence                   45599999999998888888776666653     23579999999997654

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.71  E-value=6e-17  Score=120.08  Aligned_cols=114  Identities=22%  Similarity=0.230  Sum_probs=81.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCc----------CC
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSE----------FD   89 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~----------~~   89 (240)
                      .+|+++|++|+|||||+|+|++........ ..+.|.........+ ++..+.+|||||+..+.....          ..
T Consensus         5 ~ki~ivG~~g~GKStLl~~l~~~~~~~~~~-~~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~   82 (172)
T 2gj8_A            5 MKVVIAGRPNAGKSSLLNALAGREAAIVTD-IAGTTRDVLREHIHI-DGMPLHIIDTAGLREASDEVERIGIERAWQEIE   82 (172)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSCCSCCCS-STTCCCSCEEEEEEE-TTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCcceeeC-CCCceeceeeEEEEE-CCeEEEEEECCCcccchhHHHHHHHHHHHHHHH
Confidence            899999999999999999999875322211 233344443344555 677889999999976532111          17


Q ss_pred             CceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363           90 EIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDEL  137 (240)
Q Consensus        90 ~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~  137 (240)
                      .+|++++|+|++++.+.....++..+.....  ...|+++|+||+|..
T Consensus        83 ~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~NK~Dl~  128 (172)
T 2gj8_A           83 QADRVLFMVDGTTTDAVDPAEIWPEFIARLP--AKLPITVVRNKADIT  128 (172)
T ss_dssp             TCSEEEEEEETTTCCCCSHHHHCHHHHHHSC--TTCCEEEEEECHHHH
T ss_pred             hCCEEEEEEECCCCCCHHHHHHHHHHHHhcc--cCCCEEEEEECccCC
Confidence            8899999999987777666666666665432  236799999999953

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=99.70  E-value=2.7e-16  Score=115.80  Aligned_cols=142  Identities=15%  Similarity=0.163  Sum_probs=85.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEE
Q 036363           19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAA   94 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~   94 (240)
                      ..+|+++|++|+|||||+|++++...........+  .......... ++  ..+.+|||||...+......  ..+|++
T Consensus         6 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~--~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~   82 (170)
T 1z08_A            6 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLG--ASFLTKKLNI-GGKRVNLAIWDTAGQERFHALGPIYYRDSNGA   82 (170)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCS--CEEEEEEEES-SSCEEEEEEEECCCC-------CCSSTTCSEE
T ss_pred             ceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccc--eEEEEEEEEE-CCEEEEEEEEECCCcHhhhhhHHHHhccCCEE
Confidence            47999999999999999999997764333222222  2222223333 33  36789999998877655444  889999


Q ss_pred             EEEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCCcccHHHHhcccCCchHHHHHHHhCCcEEEEeCC
Q 036363           95 LVVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELEANDETLEDYLGRECPKPLKEILHLFDNRCVLFDNK  173 (240)
Q Consensus        95 l~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (240)
                      ++|+|++++.+... ..++..+....+.  ..|+++|+||+|.........         .....+....+..++..+..
T Consensus        83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~~~~~~~---------~~~~~~~~~~~~~~~~~Sa~  151 (170)
T 1z08_A           83 ILVYDITDEDSFQKVKNWVKELRKMLGN--EICLCIVGNKIDLEKERHVSI---------QEAESYAESVGAKHYHTSAK  151 (170)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHHGG--GSEEEEEEECGGGGGGCCSCH---------HHHHHHHHHTTCEEEEEBTT
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCC--CCeEEEEEECcccccccccCH---------HHHHHHHHHcCCeEEEecCC
Confidence            99999986544443 3344455544332  368999999999654321111         12344455556666666655


Q ss_pred             C
Q 036363          174 T  174 (240)
Q Consensus       174 ~  174 (240)
                      .
T Consensus       152 ~  152 (170)
T 1z08_A          152 Q  152 (170)
T ss_dssp             T
T ss_pred             C
Confidence            3

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=99.70  E-value=1.1e-15  Score=115.48  Aligned_cols=119  Identities=16%  Similarity=0.099  Sum_probs=80.5

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhCCCCcc-ccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCce
Q 036363           16 SNGVRTVVLVGHTGNGKSATGNSILGRRAFK-SRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIH   92 (240)
Q Consensus        16 ~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~   92 (240)
                      .....+|+|+|.+|+|||||+++|++..... ....    |.......+.. .+..+.+|||||+..+......  ..+|
T Consensus        14 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~----t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   88 (199)
T 4bas_A           14 SKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITA----TVGYNVETFEK-GRVAFTVFDMGGAKKFRGLWETYYDNID   88 (199)
T ss_dssp             --CEEEEEEECCTTSCHHHHHHHHSCCC----CCCC----CSSEEEEEEEE-TTEEEEEEEECCSGGGGGGGGGGCTTCS
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHhcCCCccccccc----ccceeEEEEEe-CCEEEEEEECCCCHhHHHHHHHHHhcCC
Confidence            3355899999999999999999999987544 2122    22233344445 7789999999999877655444  8899


Q ss_pred             EEEEEEECCCCCCHHHH-HHHHHHHHHhCC------CcCCeEEEEEeCCCCCCC
Q 036363           93 AALVVFSVRSRFSQEEE-ATLHSLQTLFGK------NCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        93 ~~l~v~~~~~~~~~~~~-~~l~~l~~~~~~------~~~~~~i~v~~~~D~~~~  139 (240)
                      ++++|+|++++.+.... .++..+......      ....|+++|+||+|....
T Consensus        89 ~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~  142 (199)
T 4bas_A           89 AVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGA  142 (199)
T ss_dssp             EEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTC
T ss_pred             EEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCC
Confidence            99999999976665543 344444322110      014679999999996654

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=99.70  E-value=6.4e-16  Score=117.27  Aligned_cols=120  Identities=18%  Similarity=0.137  Sum_probs=75.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEE
Q 036363           17 NGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAA   94 (240)
Q Consensus        17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~   94 (240)
                      ....+|+++|.+|+|||||+|+|++...........+.+. ........ ....+.+|||||...+......  ..+|++
T Consensus        22 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   99 (201)
T 3oes_A           22 VRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGK-DEFHLHLVDTAGQDEYSILPYSFIIGVHGY   99 (201)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC-----CEEEEEEEECCCCTTCCCCGGGTTTCCEE
T ss_pred             CCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECC-EEEEEEEEECCCccchHHHHHHHHhcCCEE
Confidence            3458999999999999999999998765432222111111 11111111 3457789999998887765554  889999


Q ss_pred             EEEEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363           95 LVVFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        95 l~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~  139 (240)
                      ++|+++++..+.... .++..+..... ....|+++|+||+|....
T Consensus       100 i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~  144 (201)
T 3oes_A          100 VLVYSVTSLHSFQVIESLYQKLHEGHG-KTRVPVVLVGNKADLSPE  144 (201)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHC------CCCEEEEEECTTCGGG
T ss_pred             EEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccCccc
Confidence            999999865444432 33333332222 123579999999996543

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=99.70  E-value=3.2e-16  Score=117.72  Aligned_cols=143  Identities=11%  Similarity=0.035  Sum_probs=90.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeC--CcEEEEEeCCCCCCCCCCCcC--CCceE
Q 036363           18 GVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKD--GQVVNVIDTPGLFDFSAGSEF--DEIHA   93 (240)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~--~~~~~   93 (240)
                      ...+|+++|++|+|||||+|+|++...........+.+.  ....... .  ...+.+|||||...+......  ..+|+
T Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~--~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   97 (189)
T 2gf9_A           21 YMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDF--KVKTVYR-HDKRIKLQIWDTAGQERYRTITTAYYRGAMG   97 (189)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEE--EEEEEEE-TTEEEEEEEEECCSCCSSCCSGGGGGTTCSE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEE--EEEEEEE-CCeEEEEEEEeCCCcHHHhhhHHHhccCCCE
Confidence            357999999999999999999998765333222223222  2222333 3  347889999998877665544  88999


Q ss_pred             EEEEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCCcccHHHHhcccCCchHHHHHHHhCCcEEEEeC
Q 036363           94 ALVVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELEANDETLEDYLGRECPKPLKEILHLFDNRCVLFDN  172 (240)
Q Consensus        94 ~l~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (240)
                      +++|+|++++.+... ..++..+....  ....|+++|+||+|.........         .....+....+..++..+.
T Consensus        98 ii~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~piilv~nK~Dl~~~~~~~~---------~~~~~~~~~~~~~~~~~Sa  166 (189)
T 2gf9_A           98 FLLMYDIANQESFAAVQDWATQIKTYS--WDNAQVILVGNKCDLEDERVVPA---------EDGRRLADDLGFEFFEASA  166 (189)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHS--CTTCEEEEEEECTTCGGGCCSCH---------HHHHHHHHHHTCEEEECBT
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhc--CCCCCEEEEEECcccccccCCCH---------HHHHHHHHHcCCeEEEEEC
Confidence            999999986544443 33444454432  12368999999999654321111         1234445555555655555


Q ss_pred             CC
Q 036363          173 KT  174 (240)
Q Consensus       173 ~~  174 (240)
                      ..
T Consensus       167 ~~  168 (189)
T 2gf9_A          167 KE  168 (189)
T ss_dssp             TT
T ss_pred             CC
Confidence            43

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=99.70  E-value=6.7e-16  Score=115.00  Aligned_cols=142  Identities=18%  Similarity=0.163  Sum_probs=87.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceE
Q 036363           18 GVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHA   93 (240)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~   93 (240)
                      ...+|+++|++|+|||||+|++++...........+.+.   ...... ++  ..+.+|||||...+......  ..+|+
T Consensus         5 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~---~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~   80 (181)
T 3t5g_A            5 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF---TKLITV-NGQEYHLQLVDTAGQDEYSIFPQTYSIDING   80 (181)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE---EEEEEE-TTEEEEEEEEECCCCCTTCCCCGGGTTTCSE
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE---EEEEEE-CCEEEEEEEEeCCCchhhhHHHHHHHhcCCE
Confidence            348999999999999999999996654322222222111   222333 44  35689999999888655544  78999


Q ss_pred             EEEEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCCcccHHHHhcccCCchHHHHHHHhCCcEEEEeC
Q 036363           94 ALVVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELEANDETLEDYLGRECPKPLKEILHLFDNRCVLFDN  172 (240)
Q Consensus        94 ~l~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (240)
                      +++|++++++.+... ..++..+...+.. ...|+++|+||+|.........         .....+....+..++..+.
T Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~---------~~~~~~~~~~~~~~~~~Sa  150 (181)
T 3t5g_A           81 YILVYSVTSIKSFEVIKVIHGKLLDMVGK-VQIPIMLVGNKKDLHMERVISY---------EEGKALAESWNAAFLESSA  150 (181)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHC-----CCEEEEEECTTCTTTCCSCH---------HHHHHHHHHTTCEEEECCT
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccchhcceecH---------HHHHHHHHHhCCcEEEEec
Confidence            999999986544444 2344444444332 2367999999999644321111         1234445555555555444


Q ss_pred             C
Q 036363          173 K  173 (240)
Q Consensus       173 ~  173 (240)
                      .
T Consensus       151 ~  151 (181)
T 3t5g_A          151 K  151 (181)
T ss_dssp             T
T ss_pred             C
Confidence            4

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.70  E-value=2.3e-16  Score=118.83  Aligned_cols=123  Identities=11%  Similarity=0.028  Sum_probs=78.7

Q ss_pred             ccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCC
Q 036363            6 IDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAG   85 (240)
Q Consensus         6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~   85 (240)
                      +++++++..+.   .+|+++|++|+|||||++++++..... .    ..|.........+ ++..+.+|||||...+...
T Consensus        13 ~l~~~~~~~~~---~ki~~vG~~~vGKSsli~~l~~~~~~~-~----~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~   83 (190)
T 1m2o_B           13 VLASLGLWNKH---GKLLFLGLDNAGKTTLLHMLKNDRLAT-L----QPTWHPTSEELAI-GNIKFTTFDLGGHIQARRL   83 (190)
T ss_dssp             --------------CEEEEEESTTSSHHHHHHHHHHSCCCC-C----CCCCSCEEEEEEE-TTEEEEEEECCCSGGGTTS
T ss_pred             HHHHhhccCCc---cEEEEECCCCCCHHHHHHHHhcCCCCc-c----ccCCCCCeEEEEE-CCEEEEEEECCCCHHHHHH
Confidence            44555665544   699999999999999999999865421 1    1222223345555 7788999999999877655


Q ss_pred             CcC--CCceEEEEEEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           86 SEF--DEIHAALVVFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        86 ~~~--~~~~~~l~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      ...  ..+|++++|+|++++.+.... ..+..+.... .....|+++|+||+|...
T Consensus        84 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~NK~Dl~~  138 (190)
T 1m2o_B           84 WKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIA-ELKDVPFVILGNKIDAPN  138 (190)
T ss_dssp             GGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCG-GGTTCCEEEEEECTTSTT
T ss_pred             HHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcch-hhcCCCEEEEEECCCCcC
Confidence            444  889999999999976665542 3333333211 112467999999999654

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=99.70  E-value=3e-16  Score=117.52  Aligned_cols=141  Identities=19%  Similarity=0.210  Sum_probs=86.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCc--EEEEEeCCCCCCCCCCCcC--CCceEE
Q 036363           19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQ--VVNVIDTPGLFDFSAGSEF--DEIHAA   94 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~--~~~~~~   94 (240)
                      ..+|+++|++|+|||||+|+|++........   +++.......... ++.  .+.+|||||...+......  ..+|++
T Consensus         4 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~---~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   79 (189)
T 4dsu_A            4 EYKLVVVGADGVGKSALTIQLIQNHFVDEYD---PTIEDSYRKQVVI-DGETCLLDILDTAGQEEYSAMRDQYMRTGEGF   79 (189)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSSCCCCCC---TTCCEEEEEEEEE-TTEEEEEEEEECCCC---CTTHHHHHHHCSEE
T ss_pred             EEEEEEECCCCCCHHHHHHHHHhCCCCCCCC---CCchheEEEEEEE-CCcEEEEEEEECCCcHHHHHHHHHHHhcCCEE
Confidence            4899999999999999999999876432222   1222222223333 444  4678999998877665544  788999


Q ss_pred             EEEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCCcccHHHHhcccCCchHHHHHHHhCCcEEEEeCC
Q 036363           95 LVVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELEANDETLEDYLGRECPKPLKEILHLFDNRCVLFDNK  173 (240)
Q Consensus        95 l~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (240)
                      ++|++++++.+... ..++..+..... ....|+++|+||+|..... ..         ......+....+.+++..+..
T Consensus        80 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~i~v~nK~Dl~~~~-~~---------~~~~~~~~~~~~~~~~~~Sa~  148 (189)
T 4dsu_A           80 LCVFAINNTKSFEDIHHYREQIKRVKD-SEDVPMVLVGNKCDLPSRT-VD---------TKQAQDLARSYGIPFIETSAK  148 (189)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHTT-CSCCCEEEEEECTTSSSCS-SC---------HHHHHHHHHHHTCCEEECCTT
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEECccCcccc-cC---------HHHHHHHHHHcCCeEEEEeCC
Confidence            99999986544444 334444444332 2346799999999965332 11         112334445556666666554


Q ss_pred             C
Q 036363          174 T  174 (240)
Q Consensus       174 ~  174 (240)
                      .
T Consensus       149 ~  149 (189)
T 4dsu_A          149 T  149 (189)
T ss_dssp             T
T ss_pred             C
Confidence            3

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=99.70  E-value=1.7e-16  Score=116.73  Aligned_cols=113  Identities=13%  Similarity=0.180  Sum_probs=75.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEE
Q 036363           19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAA   94 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~   94 (240)
                      ..+|+++|++|+|||||+|++++.........  +.+.........+ ++  ..+.+|||||...+......  ..+|++
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~   79 (170)
T 1g16_A            3 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFIT--TIGIDFKIKTVDI-NGKKVKLQIWDTAGQERFRTITTAYYRGAMGI   79 (170)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCC---------CCEEEEEEES-SSCEEEEEEECCTTGGGTSCCCHHHHTTEEEE
T ss_pred             ceEEEEECcCCCCHHHHHHHHHhCCCCCCCCC--ccceeEEEEEEEE-CCEEEEEEEEeCCCChhhhhhHHHHhccCCEE
Confidence            47999999999999999999998764332222  2222233333333 33  36789999998776655444  899999


Q ss_pred             EEEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCC
Q 036363           95 LVVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDE  136 (240)
Q Consensus        95 l~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~  136 (240)
                      ++|+|++++.+... ..++..+.....  ...|+++|+||+|.
T Consensus        80 i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl  120 (170)
T 1g16_A           80 ILVYDITDERTFTNIKQWFKTVNEHAN--DEAQLLLVGNKSDM  120 (170)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTC
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECccC
Confidence            99999986544433 344455554432  23689999999996

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=99.69  E-value=9e-16  Score=115.48  Aligned_cols=143  Identities=17%  Similarity=0.125  Sum_probs=89.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceE
Q 036363           18 GVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHA   93 (240)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~   93 (240)
                      ...+|+++|++|+|||||+|++++...........+.+.  ....... ++  ..+.+|||||...+......  ..+|+
T Consensus        20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~--~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   96 (191)
T 2a5j_A           20 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEF--GARMVNI-DGKQIKLQIWDTAGQESFRSITRSYYRGAAG   96 (191)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSE--EEEEEEE-TTEEEEEEEECCTTGGGTSCCCHHHHTTCSE
T ss_pred             cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccccee--EEEEEEE-CCEEEEEEEEECCCchhhhhhHHHHhccCCE
Confidence            357999999999999999999998765333222222222  2233333 44  47889999998877655444  89999


Q ss_pred             EEEEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCCcccHHHHhcccCCchHHHHHHHhCCcEEEEeC
Q 036363           94 ALVVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELEANDETLEDYLGRECPKPLKEILHLFDNRCVLFDN  172 (240)
Q Consensus        94 ~l~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (240)
                      +++|+|+++..+... ..++..+.....  ...|+++|+||+|.........         .....+....+..++..+.
T Consensus        97 ii~v~d~~~~~s~~~~~~~l~~i~~~~~--~~~piilv~nK~Dl~~~~~v~~---------~~~~~~~~~~~~~~~~~Sa  165 (191)
T 2a5j_A           97 ALLVYDITRRETFNHLTSWLEDARQHSS--SNMVIMLIGNKSDLESRRDVKR---------EEGEAFAREHGLIFMETSA  165 (191)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCGGGCCSCH---------HHHHHHHHHHTCEEEEECT
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECcccCCccccCH---------HHHHHHHHHcCCEEEEEeC
Confidence            999999986444443 344444544322  2468999999999653221111         1223444455666666665


Q ss_pred             CC
Q 036363          173 KT  174 (240)
Q Consensus       173 ~~  174 (240)
                      ..
T Consensus       166 ~~  167 (191)
T 2a5j_A          166 KT  167 (191)
T ss_dssp             TT
T ss_pred             CC
Confidence            43

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=99.69  E-value=3e-16  Score=118.37  Aligned_cols=145  Identities=18%  Similarity=0.139  Sum_probs=94.2

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCc
Q 036363           16 SNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEI   91 (240)
Q Consensus        16 ~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~   91 (240)
                      .....+|+++|++|+|||||+|+|++........  .+.+.........+ ++  ..+.+|||||...+......  ..+
T Consensus        13 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~   89 (196)
T 3tkl_A           13 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYI--STIGVDFKIRTIEL-DGKTIKLQIWDTAGQERFRTITSSYYRGA   89 (196)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCC--CCSSEEEEEEEEEE-TTEEEEEEEEEECCSGGGCTTHHHHHTTC
T ss_pred             cccceEEEEECcCCCCHHHHHHHHHcCCCCCCCC--CcccceEEEEEEEE-CCEEEEEEEEECCCcHhhhhhHHHHHhhC
Confidence            3445899999999999999999999876543332  23333333344444 44  46889999998776554444  889


Q ss_pred             eEEEEEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCCcccHHHHhcccCCchHHHHHHHhCCcEEEE
Q 036363           92 HAALVVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELEANDETLEDYLGRECPKPLKEILHLFDNRCVLF  170 (240)
Q Consensus        92 ~~~l~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (240)
                      |++++|+|++++.+... ..++..+.....  ...|+++|+||+|.........         .....+....+.+++..
T Consensus        90 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~p~ilv~nK~Dl~~~~~~~~---------~~~~~~~~~~~~~~~~~  158 (196)
T 3tkl_A           90 HGIIVVYDVTDQESFNNVKQWLQEIDRYAS--ENVNKLLVGNKCDLTTKKVVDY---------TTAKEFADSLGIPFLET  158 (196)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCTTTCCSCH---------HHHHHHHHHTTCCEEEE
T ss_pred             CEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECcccccccccCH---------HHHHHHHHHcCCcEEEE
Confidence            99999999986544433 344444544432  2368999999999654431111         12344555556677777


Q ss_pred             eCCC
Q 036363          171 DNKT  174 (240)
Q Consensus       171 ~~~~  174 (240)
                      +...
T Consensus       159 Sa~~  162 (196)
T 3tkl_A          159 SAKN  162 (196)
T ss_dssp             CTTT
T ss_pred             eCCC
Confidence            6553

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=99.69  E-value=1.8e-16  Score=116.69  Aligned_cols=115  Identities=18%  Similarity=0.155  Sum_probs=77.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEE
Q 036363           19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAA   94 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~   94 (240)
                      ..+|+++|++|+|||||+|++++...........+.+...  ....+ .+  ..+.+|||||+..+......  ..+|++
T Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~   82 (170)
T 1z0j_A            6 ELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMT--KTVQY-QNELHKFLIWDTAGLERFRALAPMYYRGSAAA   82 (170)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEE--EEEEE-TTEEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred             ceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEE--EEEEE-CCeEEEEEEEcCCCchhhhcccHhhCcCCCEE
Confidence            4799999999999999999999876533323323333222  22333 33  46889999998766544333  889999


Q ss_pred             EEEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           95 LVVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        95 l~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      ++|+|++++.+... ..++..+... + ....|+++|+||+|...
T Consensus        83 i~v~d~~~~~s~~~~~~~~~~l~~~-~-~~~~~iilv~nK~Dl~~  125 (170)
T 1z0j_A           83 IIVYDITKEETFSTLKNWVRELRQH-G-PPSIVVAIAGNKCDLTD  125 (170)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHH-S-CTTSEEEEEEECTTCGG
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHh-C-CCCCcEEEEEECCcccc
Confidence            99999986555444 3444555443 2 22367899999999654

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=99.69  E-value=4.5e-16  Score=118.52  Aligned_cols=116  Identities=18%  Similarity=0.177  Sum_probs=80.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEE
Q 036363           19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAA   94 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~   94 (240)
                      ..+|+++|++|+|||||+++|++...........  +.........+ ++  ..+.+|||||...+......  ..+|++
T Consensus         8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~--~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~v   84 (206)
T 2bcg_Y            8 LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTI--GVDFKIKTVEL-DGKTVKLQIWDTAGQERFRTITSSYYRGSHGI   84 (206)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSS--CCCEEEEEEEE-TTEEEEEEEECCTTTTTTTCCCGGGGTTCSEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcc--cceeEEEEEEE-CCEEEEEEEEeCCChHHHHHHHHHhccCCCEE
Confidence            4899999999999999999999876543322222  22233333444 44  37889999999887665554  889999


Q ss_pred             EEEEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363           95 LVVFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        95 l~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~  139 (240)
                      ++|+|++++.+.... .++..+.....  ...|+++|+||+|....
T Consensus        85 ilv~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~  128 (206)
T 2bcg_Y           85 IIVYDVTDQESFNGVKMWLQEIDRYAT--STVLKLLVGNKCDLKDK  128 (206)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHSC--TTCEEEEEEECTTCTTT
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECCCCccc
Confidence            999999865554443 33444444322  24689999999996543

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.69  E-value=4.1e-16  Score=113.76  Aligned_cols=112  Identities=22%  Similarity=0.233  Sum_probs=77.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC---------CC
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF---------DE   90 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~---------~~   90 (240)
                      .+|+++|++|+|||||++++++....... ...+.+.......... .+..+.+|||||+.........         ..
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~   79 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVA-DVPGVTRDLKEGVVET-DRGRFLLVDTGGLWSGDKWEKKIQEKVDRALED   79 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHCCC------------CCEEEEEEE-TTEEEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCeeecc-CCCCceecceEEEEEe-CCceEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence            68999999999999999999987632121 1233444444455555 7778999999999875431111         78


Q ss_pred             ceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           91 IHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        91 ~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      +|++++|+|++++++..+......+..     ...|+++|+||+|...
T Consensus        80 ~~~~i~v~d~~~~~~~~~~~~~~~~~~-----~~~p~ilv~nK~Dl~~  122 (161)
T 2dyk_A           80 AEVVLFAVDGRAELTQADYEVAEYLRR-----KGKPVILVATKVDDPK  122 (161)
T ss_dssp             CSEEEEEEESSSCCCHHHHHHHHHHHH-----HTCCEEEEEECCCSGG
T ss_pred             CCEEEEEEECCCcccHhHHHHHHHHHh-----cCCCEEEEEECccccc
Confidence            999999999997788777666665544     2357999999999554

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.69  E-value=2e-16  Score=124.62  Aligned_cols=109  Identities=17%  Similarity=0.202  Sum_probs=78.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCC----cC-------
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGS----EF-------   88 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~----~~-------   88 (240)
                      .+|+++|++|+|||||+|+|+|.....+..  .+.|.........+ ++..+.+|||||+.++....    ..       
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~--pg~Tv~~~~~~~~~-~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~   78 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTNANQRVGNW--PGVTVEKKTGEFLL-GEHLIEITDLPGVYSLVANAEGISQDEQIAAQS   78 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTSEEEEEC--TTSSSEEEEEEEEE-TTEEEEEEECCCCSSCC------CHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCccCC--CCceEEEEEEEEEE-CCeEEEEEeCCCcccccccccCCCHHHHHHHHH
Confidence            589999999999999999999987543332  46666666666666 78899999999999887531    10       


Q ss_pred             ---CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           89 ---DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        89 ---~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                         ..+|++++|+|+++  ..........+.     ....|+++|+||+|...
T Consensus        79 ~~~~~~d~vi~VvDas~--~~~~~~l~~~l~-----~~~~pvilv~NK~Dl~~  124 (256)
T 3iby_A           79 VIDLEYDCIINVIDACH--LERHLYLTSQLF-----ELGKPVVVALNMMDIAE  124 (256)
T ss_dssp             HHHSCCSEEEEEEEGGG--HHHHHHHHHHHT-----TSCSCEEEEEECHHHHH
T ss_pred             HhhCCCCEEEEEeeCCC--chhHHHHHHHHH-----HcCCCEEEEEEChhcCC
Confidence               68999999999984  122223333332     22468999999999653

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=99.69  E-value=1.6e-15  Score=114.86  Aligned_cols=139  Identities=15%  Similarity=0.143  Sum_probs=87.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC------------------------------
Q 036363           19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG------------------------------   68 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~------------------------------   68 (240)
                      ..+|+++|++|+|||||+|+|++...........+  .........+ ++                              
T Consensus         7 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (208)
T 3clv_A            7 SYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIG--ASFCTYVVNL-NDINIKNNSNNEKNNNINSINDDNNVIITNQH   83 (208)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCS--CEEEEEEEET-TC------------------------------
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCcCCCCcCcccc--ceeEEEEEEe-cCcccccccccccccccccccccccccccccc
Confidence            48999999999999999999998764322222111  1122222222 22                              


Q ss_pred             ---------cEEEEEeCCCCCCCCCCCcC--CCceEEEEEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCC
Q 036363           69 ---------QVVNVIDTPGLFDFSAGSEF--DEIHAALVVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDE  136 (240)
Q Consensus        69 ---------~~~~l~DtpG~~~~~~~~~~--~~~~~~l~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~  136 (240)
                               ..+.+|||||...+......  ..+|++++|+|++++.+..+ ..++..+....+    .|+++|+||+| 
T Consensus        84 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~----~piilv~NK~D-  158 (208)
T 3clv_A           84 NNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSN----YIIILVANKID-  158 (208)
T ss_dssp             -CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC----CEEEEEEECTT-
T ss_pred             ccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC----CcEEEEEECCC-
Confidence                     57899999998776554433  88999999999986555444 334444444322    78999999999 


Q ss_pred             CCCCcccHHHHhcccCCchHHHHHHHhCCcEEEEeCCC
Q 036363          137 LEANDETLEDYLGRECPKPLKEILHLFDNRCVLFDNKT  174 (240)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (240)
                      ........+         .+..+....+..++..+...
T Consensus       159 ~~~~~~~~~---------~~~~~~~~~~~~~~~~Sa~~  187 (208)
T 3clv_A          159 KNKFQVDIL---------EVQKYAQDNNLLFIQTSAKT  187 (208)
T ss_dssp             CC-CCSCHH---------HHHHHHHHTTCEEEEECTTT
T ss_pred             cccccCCHH---------HHHHHHHHcCCcEEEEecCC
Confidence            433211222         23445555566666666553

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=99.68  E-value=3.5e-16  Score=114.84  Aligned_cols=140  Identities=19%  Similarity=0.096  Sum_probs=88.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEE
Q 036363           19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAA   94 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~   94 (240)
                      ..+|+++|++|+|||||+|++++...........+  .........+ ++  ..+.+|||||...+......  ..+|++
T Consensus         5 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~--~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   81 (168)
T 1z2a_A            5 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIG--VDFLERQIQV-NDEDVRLMLWDTAGQEEFDAITKAYYRGAQAC   81 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCS--SSEEEEEEEE-TTEEEEEEEECCTTGGGTTCCCHHHHTTCCEE
T ss_pred             eEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceE--EEEEEEEEEE-CCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEE
Confidence            48999999999999999999998754332222222  2222233333 33  37889999998776555444  889999


Q ss_pred             EEEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCCcccHHHHhcccCCchHHHHHHHhCCcEEEEeCC
Q 036363           95 LVVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELEANDETLEDYLGRECPKPLKEILHLFDNRCVLFDNK  173 (240)
Q Consensus        95 l~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (240)
                      ++|++++++.+... ..++..+.....   ..|+++|+||+|.........         ..+..+....+..++..+..
T Consensus        82 i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~piilv~nK~Dl~~~~~~~~---------~~~~~~~~~~~~~~~~~Sa~  149 (168)
T 1z2a_A           82 VLVFSTTDRESFEAISSWREKVVAEVG---DIPTALVQNKIDLLDDSCIKN---------EEAEGLAKRLKLRFYRTSVK  149 (168)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHC---SCCEEEEEECGGGGGGCSSCH---------HHHHHHHHHHTCEEEECBTT
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhCC---CCCEEEEEECcccCcccccCH---------HHHHHHHHHcCCeEEEEecC
Confidence            99999986444433 344445544432   367999999999654321111         12334444556566655544

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=99.68  E-value=9.4e-16  Score=115.47  Aligned_cols=143  Identities=18%  Similarity=0.137  Sum_probs=87.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEe-CCcEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363           19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLK-DGQVVNVIDTPGLFDFSAGSEF--DEIHAAL   95 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l   95 (240)
                      ..+|+++|++|+|||||+|+|++...........+.+...  ...... ....+.+|||||+..+......  ..+|+++
T Consensus        25 ~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi  102 (193)
T 2oil_A           25 VFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFST--RTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGAL  102 (193)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEE--EEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEEE
T ss_pred             ceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEE--EEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEEE
Confidence            4799999999999999999999876543332222322222  222220 2346789999999877554443  8899999


Q ss_pred             EEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCCcccHHHHhcccCCchHHHHHHHhCCcEEEEeCCC
Q 036363           96 VVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELEANDETLEDYLGRECPKPLKEILHLFDNRCVLFDNKT  174 (240)
Q Consensus        96 ~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (240)
                      +|+|++++.+... ..++..+....  ....|+++|+||+|.........         .....+....+..++..+...
T Consensus       103 ~v~D~~~~~s~~~~~~~l~~i~~~~--~~~~piilv~nK~Dl~~~~~~~~---------~~~~~~~~~~~~~~~~~Sa~~  171 (193)
T 2oil_A          103 LVFDLTKHQTYAVVERWLKELYDHA--EATIVVMLVGNKSDLSQAREVPT---------EEARMFAENNGLLFLETSALD  171 (193)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHTTS--CTTCEEEEEEECGGGGGGCCSCH---------HHHHHHHHHTTCEEEEECTTT
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhc--CCCCeEEEEEECCCcccccccCH---------HHHHHHHHHcCCEEEEEeCCC
Confidence            9999985444332 23333343221  23468999999999654321111         123344445555666665543

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=99.68  E-value=3.1e-16  Score=118.20  Aligned_cols=119  Identities=17%  Similarity=0.065  Sum_probs=78.9

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEE
Q 036363           17 NGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAA   94 (240)
Q Consensus        17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~   94 (240)
                      ....+|+++|++|+|||||+|++++...........+.+.......... ....+.+|||||...+......  ..+|++
T Consensus        21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i   99 (192)
T 2fg5_A           21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGN-ELHKFLIWDTAGQERFHSLAPMYYRGSAAA   99 (192)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSS-SEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCC-EEEEEEEEcCCCchhhHhhhHHhhccCCEE
Confidence            3458999999999999999999998764333233333333222221111 2347899999998766544433  889999


Q ss_pred             EEEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           95 LVVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        95 l~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      ++|+|+++..+... ..++..+.....  ...|+++|+||+|...
T Consensus       100 ilV~d~~~~~s~~~~~~~~~~i~~~~~--~~~piiiv~NK~Dl~~  142 (192)
T 2fg5_A          100 VIVYDITKQDSFYTLKKWVKELKEHGP--ENIVMAIAGNKCDLSD  142 (192)
T ss_dssp             EEEEETTCTHHHHHHHHHHHHHHHHSC--TTCEEEEEEECGGGGG
T ss_pred             EEEEeCCCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEECccccc
Confidence            99999986555444 334444444321  2368999999999653

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=99.68  E-value=2.7e-15  Score=110.43  Aligned_cols=114  Identities=14%  Similarity=0.063  Sum_probs=79.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEEEE
Q 036363           19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAALV   96 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~   96 (240)
                      ..+|+++|++|+|||||+|++++..... .    ..|.........+ ++..+.+|||||...+......  ..+|++++
T Consensus         7 ~~~i~v~G~~~~GKssl~~~l~~~~~~~-~----~~t~~~~~~~~~~-~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~   80 (171)
T 1upt_A            7 EMRILILGLDGAGKTTILYRLQVGEVVT-T----IPTIGFNVETVTY-KNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIY   80 (171)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHSSCCC-C----CCCSSEEEEEEEE-TTEEEEEEEECCCGGGGGGGGGGCTTCSEEEE
T ss_pred             ccEEEEECCCCCCHHHHHHHHhcCCCCC-c----CCcCccceEEEEE-CCEEEEEEECCCChhhhHHHHHHhccCCEEEE
Confidence            3899999999999999999998765422 1    1233334445556 7889999999999876554433  88999999


Q ss_pred             EEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363           97 VFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        97 v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~  139 (240)
                      |+|++++.+.... ..+..+..... ....|+++|+||+|....
T Consensus        81 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~  123 (171)
T 1upt_A           81 VVDSCDRDRIGISKSELVAMLEEEE-LRKAILVVFANKQDMEQA  123 (171)
T ss_dssp             EEETTCCTTHHHHHHHHHHHHTCGG-GTTCEEEEEEECTTSTTC
T ss_pred             EEECCCHHHHHHHHHHHHHHHhchh-hCCCEEEEEEECCCCcCC
Confidence            9999977665542 33333322110 124689999999996544

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=99.68  E-value=5.1e-16  Score=115.51  Aligned_cols=117  Identities=21%  Similarity=0.198  Sum_probs=79.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeC--CcEEEEEeCCCCCCCCCCCcC--CCceE
Q 036363           18 GVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKD--GQVVNVIDTPGLFDFSAGSEF--DEIHA   93 (240)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~--~~~~~   93 (240)
                      ...+|+++|++|+|||||+|++++...........+.+...  ....+ .  ...+.+|||||...+......  ..+|+
T Consensus        11 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   87 (181)
T 2efe_B           11 INAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFS--QTLAV-NDATVKFEIWDTAGQERYHSLAPMYYRGAAA   87 (181)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEE--EEEEE-TTEEEEEEEEECCCSGGGGGGTHHHHTTCSE
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEE--EEEEE-CCEEEEEEEEeCCCChhhhhhhHHHhccCCE
Confidence            34799999999999999999999876543333333333222  22333 3  347889999998766544333  88999


Q ss_pred             EEEEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363           94 ALVVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        94 ~l~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~  139 (240)
                      +++|+|++++.+... ..++..+.....  ...|+++|+||+|....
T Consensus        88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~i~v~nK~Dl~~~  132 (181)
T 2efe_B           88 AIIVFDVTNQASFERAKKWVQELQAQGN--PNMVMALAGNKSDLLDA  132 (181)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHSC--TTCEEEEEEECTTCTTT
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECCccccc
Confidence            999999986555443 344555554422  24679999999996543

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=99.68  E-value=1.7e-16  Score=119.49  Aligned_cols=115  Identities=18%  Similarity=0.160  Sum_probs=75.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeC--CcEEEEEeCCCCCCCCCCCcC--CCceEE
Q 036363           19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKD--GQVVNVIDTPGLFDFSAGSEF--DEIHAA   94 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~--~~~~~~   94 (240)
                      ..+|+++|++|+|||||+|+|++...........+.+.  ......+ .  ...+.+|||||...+......  ..+|++
T Consensus        15 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~--~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i   91 (195)
T 1x3s_A           15 TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDF--KVKTISV-DGNKAKLAIWDTAGQERFRTLTPSYYRGAQGV   91 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEE--EEEEEEE-TTEEEEEEEEEECSSGGGCCSHHHHHTTCCEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEE--EEEEEEE-CCeEEEEEEEeCCCchhhhhhhHHHhccCCEE
Confidence            48999999999999999999998764333222222222  2222333 3  346889999998776554443  889999


Q ss_pred             EEEEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363           95 LVVFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDEL  137 (240)
Q Consensus        95 l~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~  137 (240)
                      ++|+|++++.+.... .++..+.... .....|+++|+||+|..
T Consensus        92 i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~p~ilv~nK~Dl~  134 (195)
T 1x3s_A           92 ILVYDVTRRDTFVKLDNWLNELETYC-TRNDIVNMLVGNKIDKE  134 (195)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHTTCC-SCSCCEEEEEEECTTSS
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhc-CcCCCcEEEEEECCcCc
Confidence            999999855444332 2333332221 11346899999999963

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=99.68  E-value=1.9e-15  Score=115.00  Aligned_cols=117  Identities=14%  Similarity=0.119  Sum_probs=78.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceE
Q 036363           18 GVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHA   93 (240)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~   93 (240)
                      ...+|+++|++|+|||||+|+|++........  ...+.......... ++  ..+.+|||||...+......  ..+|+
T Consensus         7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~--~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   83 (207)
T 1vg8_A            7 VLLKVIILGDSGVGKTSLMNQYVNKKFSNQYK--ATIGADFLTKEVMV-DDRLVTMQIWDTAGQERFQSLGVAFYRGADC   83 (207)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCC--CCCSEEEEEEEEES-SSCEEEEEEEEECSSGGGSCSCCGGGTTCSE
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcCCCCCCCC--CcccceEEEEEEEE-CCEEEEEEEEeCCCcHHHHHhHHHHHhCCcE
Confidence            45899999999999999999999876433222  22222333333333 33  47899999998876655444  88999


Q ss_pred             EEEEEECCCCCCHHHH-HHHHHHHHHhCC--CcCCeEEEEEeCCCCC
Q 036363           94 ALVVFSVRSRFSQEEE-ATLHSLQTLFGK--NCFDYMIVVFSGRDEL  137 (240)
Q Consensus        94 ~l~v~~~~~~~~~~~~-~~l~~l~~~~~~--~~~~~~i~v~~~~D~~  137 (240)
                      +++|+|++++.+.... .++..+......  ....|+++|+||+|..
T Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~  130 (207)
T 1vg8_A           84 CVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE  130 (207)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc
Confidence            9999999865444432 344445444321  1236799999999965

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.68  E-value=1.3e-15  Score=114.67  Aligned_cols=113  Identities=15%  Similarity=0.150  Sum_probs=79.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--------
Q 036363           17 NGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--------   88 (240)
Q Consensus        17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--------   88 (240)
                      ....+|+++|++|+|||||+|+|++.... ......+.|.......    .+..+.+|||||+.........        
T Consensus        21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~t~~~~~~~----~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   95 (195)
T 3pqc_A           21 PLKGEVAFVGRSNVGKSSLLNALFNRKIA-FVSKTPGKTRSINFYL----VNSKYYFVDLPGYGYAKVSKKERMLWKRLV   95 (195)
T ss_dssp             CTTCEEEEEEBTTSSHHHHHHHHHTSCCS-CCCSSCCCCCCEEEEE----ETTTEEEEECCCBSSSCCCHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHcCccc-cccCCCCCccCeEEEE----ECCcEEEEECCCCccccCChhhHHHHHHHH
Confidence            34489999999999999999999998632 2222334444433221    3456889999997654322111        


Q ss_pred             -------CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363           89 -------DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        89 -------~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~  139 (240)
                             ..+|++++|+|++...+..+...+.++...     ..|+++|+||+|...+
T Consensus        96 ~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~-----~~p~i~v~nK~Dl~~~  148 (195)
T 3pqc_A           96 EDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL-----NIPFTIVLTKMDKVKM  148 (195)
T ss_dssp             HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT-----TCCEEEEEECGGGSCG
T ss_pred             HHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc-----CCCEEEEEEChhcCCh
Confidence                   567999999999877788777777666543     3679999999997654

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.68  E-value=6.6e-17  Score=118.93  Aligned_cols=115  Identities=20%  Similarity=0.200  Sum_probs=77.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAAL   95 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~l   95 (240)
                      .+|+++|++|+|||||+|++++...........+.+..  .....+ ++  ..+.+|||||...+......  ..+|+++
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i   80 (170)
T 1ek0_A            4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFL--TQRVTI-NEHTVKFEIWDTAGQERFASLAPXYYRNAQAAL   80 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEE--EEEEEE-TTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred             EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEEEEE-CCEEEEEEEEECCCChhhhhhhhhhhccCcEEE
Confidence            78999999999999999999987644333222222222  222333 33  37889999997765443332  8899999


Q ss_pred             EEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363           96 VVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        96 ~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~  139 (240)
                      +|+|++++.+..+ ..++..+.....  ...|+++|+||+|....
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~  123 (170)
T 1ek0_A           81 VVYDVTKPQSFIKARHWVKELHEQAS--KDIIIALVGNKIDXLQE  123 (170)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHSC--TTCEEEEEEECGGGGGS
T ss_pred             EEEecCChHHHHHHHHHHHHHHHhcC--CCCcEEEEEECCCcccc
Confidence            9999986544443 234445544432  23679999999996643

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.68  E-value=1.5e-16  Score=120.55  Aligned_cols=124  Identities=15%  Similarity=0.074  Sum_probs=78.5

Q ss_pred             CccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCC
Q 036363            5 RIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSA   84 (240)
Q Consensus         5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~   84 (240)
                      .+++++++....   .+|+++|++|+|||||++++++..... ...+.+.+    .....+ ++..+.+|||||...+..
T Consensus        14 ~~l~~~~~~~~~---~ki~lvG~~~vGKSsLi~~l~~~~~~~-~~~t~~~~----~~~~~~-~~~~l~i~Dt~G~~~~~~   84 (198)
T 1f6b_A           14 SVLQFLGLYKKT---GKLVFLGLDNAGKTTLLHMLKDDRLGQ-HVPTLHPT----SEELTI-AGMTFTTFDLGGHIQARR   84 (198)
T ss_dssp             HHHHHHTCTTCC---EEEEEEEETTSSHHHHHHHHSCC-------CCCCCS----CEEEEE-TTEEEEEEEECC----CC
T ss_pred             HHHHHhhccCCC---cEEEEECCCCCCHHHHHHHHhcCCCCc-cCCCCCce----eEEEEE-CCEEEEEEECCCcHhhHH
Confidence            344555665544   689999999999999999999875422 11112222    234455 678899999999988766


Q ss_pred             CCcC--CCceEEEEEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           85 GSEF--DEIHAALVVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        85 ~~~~--~~~~~~l~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      ....  ..+|++++|+|++++.+... ..++..+.... .....|+++|+||+|...
T Consensus        85 ~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~NK~Dl~~  140 (198)
T 1f6b_A           85 VWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDE-TIANVPILILGNKIDRPE  140 (198)
T ss_dssp             GGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCG-GGTTSCEEEEEECTTSTT
T ss_pred             HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCc-ccCCCcEEEEEECCCccc
Confidence            5544  88999999999986655554 23333333211 112367999999999654

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=99.67  E-value=3e-16  Score=115.39  Aligned_cols=116  Identities=17%  Similarity=0.140  Sum_probs=76.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEe-CCcEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363           19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLK-DGQVVNVIDTPGLFDFSAGSEF--DEIHAAL   95 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l   95 (240)
                      ..+|+++|++|+|||||+|++++...........+.+...  ...... ....+.+|||||...+......  ..+|+++
T Consensus         6 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i   83 (170)
T 1r2q_A            6 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLT--QTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAI   83 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEE--EEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEE--EEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEE
Confidence            4799999999999999999999765433322223322222  222331 1347889999998765443333  8899999


Q ss_pred             EEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           96 VVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        96 ~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      +|+|++++.+... ..++..+.....  ...|+++|+||+|...
T Consensus        84 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iilv~nK~Dl~~  125 (170)
T 1r2q_A           84 VVYDITNEESFARAKNWVKELQRQAS--PNIVIALSGNKADLAN  125 (170)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHSC--TTCEEEEEEECGGGGG
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECccCcc
Confidence            9999986544443 334444444322  2367899999999643

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=99.67  E-value=1.4e-15  Score=113.48  Aligned_cols=144  Identities=23%  Similarity=0.221  Sum_probs=90.3

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCc--EEEEEeCCCCCCCCCCCcC--CCc
Q 036363           16 SNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQ--VVNVIDTPGLFDFSAGSEF--DEI   91 (240)
Q Consensus        16 ~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~--~~~   91 (240)
                      ..+..+|+++|++|+|||||+|++++...........+  .. ....... ++.  .+.+|||||...+......  ..+
T Consensus        15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~--~~-~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~   90 (183)
T 3kkq_A           15 NLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIE--DS-YLKHTEI-DNQWAILDVLDTAGQEEFSAMREQYMRTG   90 (183)
T ss_dssp             CCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCC--EE-EEEEEEE-TTEEEEEEEEECCSCGGGCSSHHHHHHHC
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc--ce-eEEEEEe-CCcEEEEEEEECCCchhhHHHHHHHHhcC
Confidence            34568999999999999999999997654332222111  11 1222333 444  4567999998776554443  789


Q ss_pred             eEEEEEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCCcccHHHHhcccCCchHHHHHHHhCCcEEEE
Q 036363           92 HAALVVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELEANDETLEDYLGRECPKPLKEILHLFDNRCVLF  170 (240)
Q Consensus        92 ~~~l~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (240)
                      |++++|++++++.+... ..++..+...... ...|+++|+||+|.........         .....+....+..++..
T Consensus        91 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~v~~---------~~~~~~~~~~~~~~~~~  160 (183)
T 3kkq_A           91 DGFLIVYSVTDKASFEHVDRFHQLILRVKDR-ESFPMILVANKVDLMHLRKVTR---------DQGKEMATKYNIPYIET  160 (183)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHHTS-SCCCEEEEEECTTCSTTCCSCH---------HHHHHHHHHHTCCEEEE
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEECCCchhccCcCH---------HHHHHHHHHhCCeEEEe
Confidence            99999999986544443 3444445443332 2367999999999654321111         12345555666777777


Q ss_pred             eCC
Q 036363          171 DNK  173 (240)
Q Consensus       171 ~~~  173 (240)
                      +..
T Consensus       161 Sa~  163 (183)
T 3kkq_A          161 SAK  163 (183)
T ss_dssp             BCS
T ss_pred             ccC
Confidence            766

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.67  E-value=4.9e-16  Score=116.81  Aligned_cols=118  Identities=16%  Similarity=0.071  Sum_probs=80.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363           18 GVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAAL   95 (240)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l   95 (240)
                      ...+|+++|++|+|||||+|++++...+....   ..|.........+ ++..+.+|||||...+......  ..+|+++
T Consensus        20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~---~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   95 (190)
T 2h57_A           20 KEVHVLCLGLDNSGKTTIINKLKPSNAQSQNI---LPTIGFSIEKFKS-SSLSFTVFDMSGQGRYRNLWEHYYKEGQAII   95 (190)
T ss_dssp             -CEEEEEEECTTSSHHHHHHHTSCGGGCCSSC---CCCSSEEEEEEEC-SSCEEEEEEECCSTTTGGGGGGGGGGCSEEE
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCCCCCCCc---CCccceeEEEEEE-CCEEEEEEECCCCHHHHHHHHHHHhcCCEEE
Confidence            45899999999999999999999876322221   2233344445555 6789999999998877655443  8899999


Q ss_pred             EEEECCCCCCHHH-HHHHHHHHHHhCC-CcCCeEEEEEeCCCCCCC
Q 036363           96 VVFSVRSRFSQEE-EATLHSLQTLFGK-NCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        96 ~v~~~~~~~~~~~-~~~l~~l~~~~~~-~~~~~~i~v~~~~D~~~~  139 (240)
                      +|+|++++.+... ...+..+...... ....|+++|+||+|....
T Consensus        96 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~  141 (190)
T 2h57_A           96 FVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDA  141 (190)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccC
Confidence            9999986544333 2334444332211 024679999999996543

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.67  E-value=9e-16  Score=116.03  Aligned_cols=121  Identities=16%  Similarity=0.158  Sum_probs=76.6

Q ss_pred             CCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEE--eCCcEEEEEeCCCCCCCCCCC---cC-
Q 036363           15 PSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVL--KDGQVVNVIDTPGLFDFSAGS---EF-   88 (240)
Q Consensus        15 ~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~~l~DtpG~~~~~~~~---~~-   88 (240)
                      +.....+|+++|.+|+|||||++.+.+.......   .+...........+  .....+.+|||||...+....   .. 
T Consensus        16 ~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~   92 (196)
T 3llu_A           16 FQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNET---LFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMI   92 (196)
T ss_dssp             ----CCEEEEEESTTSSHHHHHHHHHSCCCGGGG---GGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHH
T ss_pred             ccCcceEEEEECCCCCCHHHHHHHHHhcCCCcce---eeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccc
Confidence            3345689999999999999999999986432211   11111111111122  134678999999998876654   23 


Q ss_pred             -CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           89 -DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        89 -~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                       ..+|++++|+|+++++......+..++.+........|+++|+||+|.+.
T Consensus        93 ~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~  143 (196)
T 3llu_A           93 FRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLS  143 (196)
T ss_dssp             HHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSC
T ss_pred             cccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCc
Confidence             88999999999997632333344444444321122478999999999664

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.67  E-value=6.3e-16  Score=118.16  Aligned_cols=114  Identities=14%  Similarity=0.176  Sum_probs=78.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceE
Q 036363           18 GVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHA   93 (240)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~   93 (240)
                      ...+|+++|++|+|||||+|+|++.........  +.+.........+ ++  ..+.+|||||...+......  ..+|+
T Consensus        19 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   95 (213)
T 3cph_A           19 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFIT--TIGIDFKIKTVDI-NGKKVKLQLWDTAGQERFRTITTAYYRGAMG   95 (213)
T ss_dssp             -CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSC--CCSCCEEEEEEEE-TTEEEEEEEECCTTGGGGTCCCHHHHTTCSE
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCCCCcccCC--cccceEEEEEEEE-CCEEEEEEEEeCCCcHHHHHHHHHHhccCCE
Confidence            348999999999999999999997764333222  2233333334444 55  47899999998877655444  88999


Q ss_pred             EEEEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCC
Q 036363           94 ALVVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDE  136 (240)
Q Consensus        94 ~l~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~  136 (240)
                      +++|+|++++.+... ..++..+.....  ...|+++|+||+|.
T Consensus        96 ii~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl  137 (213)
T 3cph_A           96 IILVYDVTDERTFTNIKQWFKTVNEHAN--DEAQLLLVGNKSDM  137 (213)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHTT--TCSEEEEEEECTTC
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECCCC
Confidence            999999985544433 344455554432  23689999999996

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.67  E-value=6.4e-16  Score=115.66  Aligned_cols=115  Identities=14%  Similarity=0.100  Sum_probs=80.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363           18 GVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAAL   95 (240)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l   95 (240)
                      ...+|+++|++|+|||||+|++++.. .....+    |.........+ ++..+.+|||||+..+......  ..+|+++
T Consensus        17 ~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~----t~~~~~~~~~~-~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii   90 (186)
T 1ksh_A           17 RELRLLMLGLDNAGKTTILKKFNGED-VDTISP----TLGFNIKTLEH-RGFKLNIWDVGGQKSLRSYWRNYFESTDGLI   90 (186)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCC----CSSEEEEEEEE-TTEEEEEEEECCSHHHHTTGGGGCTTCSEEE
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCC-CCcccc----cCccceEEEEE-CCEEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence            44999999999999999999999876 222222    22333445555 7889999999998766554443  8899999


Q ss_pred             EEEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363           96 VVFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        96 ~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~  139 (240)
                      +|+|++++.+..+. ..+..+..... ....|+++|+||+|....
T Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~  134 (186)
T 1ksh_A           91 WVVDSADRQRMQDCQRELQSLLVEER-LAGATLLIFANKQDLPGA  134 (186)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGG-GTTCEEEEEEECTTSTTC
T ss_pred             EEEECcCHHHHHHHHHHHHHHHhChh-cCCCcEEEEEeCccCCCC
Confidence            99999876655542 33333332111 123689999999996543

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=99.67  E-value=5.4e-16  Score=116.47  Aligned_cols=117  Identities=17%  Similarity=0.175  Sum_probs=78.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCC-CCCcC--CCce
Q 036363           18 GVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFS-AGSEF--DEIH   92 (240)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~-~~~~~--~~~~   92 (240)
                      ...+|+++|++|+|||||+|++++...........+.  ........+ ++  ..+.+|||||...+. .....  ..+|
T Consensus        19 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~--~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d   95 (189)
T 1z06_A           19 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGV--DFRERAVDI-DGERIKIQLWDTAGQERFRKSMVQHYYRNVH   95 (189)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSC--CEEEEEEEE-TTEEEEEEEEECCCSHHHHTTTHHHHHTTCC
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcce--EEEEEEEEE-CCEEEEEEEEECCCchhhhhhhhHHHhcCCC
Confidence            4589999999999999999999976653333222222  222233334 44  478999999987654 22222  8899


Q ss_pred             EEEEEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           93 AALVVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        93 ~~l~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      ++++|+|+++..+... ..++..+...+. ....|+++|+||+|...
T Consensus        96 ~iilv~D~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~  141 (189)
T 1z06_A           96 AVVFVYDMTNMASFHSLPAWIEECKQHLL-ANDIPRILVGNKCDLRS  141 (189)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHCC-CSCCCEEEEEECTTCGG
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccc
Confidence            9999999986544443 344555555432 22367999999999644

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=99.67  E-value=2.6e-15  Score=114.04  Aligned_cols=143  Identities=20%  Similarity=0.209  Sum_probs=88.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCc--EEEEEeCCCCCCCCCCCcC--CCceE
Q 036363           18 GVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQ--VVNVIDTPGLFDFSAGSEF--DEIHA   93 (240)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~--~~~~~   93 (240)
                      ...+|+++|++|+|||||+|.+++...........   .........+ ++.  .+.+|||||...+......  ..+|+
T Consensus        13 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~---~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~   88 (206)
T 2bov_A           13 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTK---ADSYRKKVVL-DGEEVQIDILDTAGQEDYAAIRDNYFRSGEG   88 (206)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTC---CEEEEEEEEE-TTEEEEEEEEECCCTTCCHHHHHHHHHHCSE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcc---ceEEEEEEEE-CCEEEEEEEEcCCChhhhHHHHHHHHhhCCE
Confidence            44899999999999999999999876432222111   1111223333 443  6889999998765433322  77899


Q ss_pred             EEEEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCCcccHHHHhcccCCchHHHHHHHhCCcEEEEeC
Q 036363           94 ALVVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELEANDETLEDYLGRECPKPLKEILHLFDNRCVLFDN  172 (240)
Q Consensus        94 ~l~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (240)
                      +++|+++++..+... ..++..+...... ...|+++|+||+|.........+         .+..+....+..++..+.
T Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~~~~~---------~~~~~~~~~~~~~~~~Sa  158 (206)
T 2bov_A           89 FLCVFSITEMESFAATADFREQILRVKED-ENVPFLLVGNKSDLEDKRQVSVE---------EAKNRAEQWNVNYVETSA  158 (206)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHTTC-SCCCEEEEEECTTCGGGCCSCHH---------HHHHHHHHHTCEEEEECT
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEeccCccccccccHH---------HHHHHHHHhCCeEEEEeC
Confidence            999999986544443 3444455544332 23679999999996543211111         233444555666666665


Q ss_pred             CC
Q 036363          173 KT  174 (240)
Q Consensus       173 ~~  174 (240)
                      ..
T Consensus       159 ~~  160 (206)
T 2bov_A          159 KT  160 (206)
T ss_dssp             TT
T ss_pred             CC
Confidence            53

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.66  E-value=1.1e-15  Score=123.19  Aligned_cols=111  Identities=18%  Similarity=0.289  Sum_probs=78.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCC-C--------CCCCCc--C
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLF-D--------FSAGSE--F   88 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~-~--------~~~~~~--~   88 (240)
                      .+|+|+|++|+|||||+|+|+|........ ..++|.........+ ++..+.++||||+. .        +.....  .
T Consensus         9 ~~VaIvG~~nvGKSTLln~L~g~~~~i~s~-~~~tTr~~~~gi~~~-~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l   86 (301)
T 1ega_A            9 GFIAIVGRPNVGKSTLLNKLLGQKISITSR-KAQTTRHRIVGIHTE-GAYQAIYVDTPGLHMEEKRAINRLMNKAASSSI   86 (301)
T ss_dssp             EEEEEECSSSSSHHHHHHHHHTCSEEECCC-CSSCCSSCEEEEEEE-TTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCC
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCccccCC-CCCcceeeEEEEEEE-CCeeEEEEECcCCCccchhhHHHHHHHHHHHHH
Confidence            689999999999999999999986532221 223343333333444 77789999999997 2        222111  2


Q ss_pred             CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           89 DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        89 ~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      ..+|++++|+|+++ ++..+...++.+.    . ...|+++++||+|...
T Consensus        87 ~~~D~vl~Vvd~~~-~~~~~~~i~~~l~----~-~~~P~ilvlNK~D~~~  130 (301)
T 1ega_A           87 GDVELVIFVVEGTR-WTPDDEMVLNKLR----E-GKAPVILAVNKVDNVQ  130 (301)
T ss_dssp             CCEEEEEEEEETTC-CCHHHHHHHHHHH----S-SSSCEEEEEESTTTCC
T ss_pred             hcCCEEEEEEeCCC-CCHHHHHHHHHHH----h-cCCCEEEEEECcccCc
Confidence            88999999999986 8888776665553    1 2367999999999654

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=99.66  E-value=3.2e-16  Score=116.27  Aligned_cols=116  Identities=18%  Similarity=0.196  Sum_probs=77.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceE
Q 036363           18 GVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHA   93 (240)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~   93 (240)
                      ...+|+++|++|+|||||+|++++...........+.+...  ..... .+  ..+.+|||||...+......  ..+|+
T Consensus        14 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   90 (179)
T 1z0f_A           14 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGT--RIIEV-SGQKIKLQIWDTAGQERFRAVTRSYYRGAAG   90 (179)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEE--EEEEE-TTEEEEEEEEECTTGGGTCHHHHHHHHTCSE
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEE--EEEEE-CCeEEEEEEEECCCChHhhhhHHHHhccCCE
Confidence            45899999999999999999999876533322222222222  22233 33  46789999997765433322  78899


Q ss_pred             EEEEEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           94 ALVVFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        94 ~l~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      +++|+|++++.+.... .++..+.....  ...|+++|+||+|...
T Consensus        91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~  134 (179)
T 1z0f_A           91 ALMVYDITRRSTYNHLSSWLTDARNLTN--PNTVIILIGNKADLEA  134 (179)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCGG
T ss_pred             EEEEEeCcCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECccccc
Confidence            9999999865444432 34444544432  2468999999999653

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.66  E-value=4.7e-16  Score=116.02  Aligned_cols=114  Identities=13%  Similarity=0.098  Sum_probs=79.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363           18 GVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAAL   95 (240)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l   95 (240)
                      ...+|+++|.+|+|||||+|++++... .......+.+    .....+ ++..+.+|||||...+......  ..+|+++
T Consensus        20 ~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~----~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   93 (181)
T 2h17_A           20 QEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSN----VEEIVI-NNTRFLMWDIGGQESLRSSWNTYYTNTEFVI   93 (181)
T ss_dssp             -CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSS----CEEEEE-TTEEEEEEEESSSGGGTCGGGGGGTTCCEEE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCcee----eEEEEE-CCEEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence            458999999999999999999998765 2222222222    233445 7788999999999877655444  8899999


Q ss_pred             EEEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           96 VVFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        96 ~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      +|+|++++.+.... ..+..+..... ....|+++|+||+|...
T Consensus        94 ~v~D~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~  136 (181)
T 2h17_A           94 VVVDSTDRERISVTREELYKMLAHED-LRKAGLLIFANKQDVKE  136 (181)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHHTCGG-GTTCEEEEEEECTTSTT
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhChh-hCCCeEEEEEECCCccc
Confidence            99999977666542 33433332210 13468999999999654

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=99.66  E-value=4.1e-16  Score=115.98  Aligned_cols=119  Identities=13%  Similarity=0.142  Sum_probs=71.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEe--CCcEEEEEeCCCCCCCCCCCcC--CCce
Q 036363           17 NGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLK--DGQVVNVIDTPGLFDFSAGSEF--DEIH   92 (240)
Q Consensus        17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~l~DtpG~~~~~~~~~~--~~~~   92 (240)
                      ....+|+++|++|+|||||++++++...........+.  ........+.  ....+.+|||||...+......  ..+|
T Consensus         6 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   83 (182)
T 1ky3_A            6 KNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGA--DFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGAD   83 (182)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCC--SCEEEEECCSSSCCEEEEEECCC----------CCSTTCC
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccce--EEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCC
Confidence            34589999999999999999999987643322222222  2222233331  1347899999998877655444  8899


Q ss_pred             EEEEEEECCCCCCHHH-HHHHHHHHHHhC--CCcCCeEEEEEeCCCCC
Q 036363           93 AALVVFSVRSRFSQEE-EATLHSLQTLFG--KNCFDYMIVVFSGRDEL  137 (240)
Q Consensus        93 ~~l~v~~~~~~~~~~~-~~~l~~l~~~~~--~~~~~~~i~v~~~~D~~  137 (240)
                      ++++|+|++++.+... ..++..+.....  .....|+++|+||+|..
T Consensus        84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~  131 (182)
T 1ky3_A           84 CCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAE  131 (182)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSC
T ss_pred             EEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccc
Confidence            9999999986544443 344445554432  11336799999999964

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.66  E-value=2.2e-15  Score=113.04  Aligned_cols=115  Identities=13%  Similarity=0.079  Sum_probs=80.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363           18 GVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAAL   95 (240)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l   95 (240)
                      +..+|+++|++|+|||||+|++++..... ..++.+    .......+ ++..+.+|||||+..+......  ..+|+++
T Consensus        21 ~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~----~~~~~~~~-~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii   94 (189)
T 2x77_A           21 RKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVG----VNLETLQY-KNISFEVWDLGGQTGVRPYWRCYFSDTDAVI   94 (189)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTT----CCEEEEEE-TTEEEEEEEECCSSSSCCCCSSSSTTCCEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCc----eEEEEEEE-CCEEEEEEECCCCHhHHHHHHHHhhcCCEEE
Confidence            34899999999999999999998766432 222222    22334445 6788999999999887665554  8999999


Q ss_pred             EEEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363           96 VVFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        96 ~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~  139 (240)
                      +|+|++++.+.... ..+..+.... .....|+++|+||+|....
T Consensus        95 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~  138 (189)
T 2x77_A           95 YVVDSTDRDRMGVAKHELYALLDED-ELRKSLLLIFANKQDLPDA  138 (189)
T ss_dssp             EEEETTCCTTHHHHHHHHHHHHTCS-TTTTCEEEEEEECTTSTTC
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhh-hcCCCeEEEEEECCCCcCC
Confidence            99999976665542 3333332211 1124689999999996544

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.66  E-value=2.6e-15  Score=111.59  Aligned_cols=118  Identities=19%  Similarity=0.180  Sum_probs=74.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCc--EEEEEeCCCCCCCCCCCcC--CCceE
Q 036363           18 GVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQ--VVNVIDTPGLFDFSAGSEF--DEIHA   93 (240)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~--~~~~~   93 (240)
                      ...+|+++|++|+|||||+|++++........ ....+.......... ++.  .+.+|||||...+......  ..+|+
T Consensus         9 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~-~~t~~~~~~~~~~~~-~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~   86 (180)
T 2g6b_A            9 VAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTF-ISTVGIDFRNKVLDV-DGVKVKLQMWDTAGQERFRSVTHAYYRDAHA   86 (180)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCCCCC-CCCCSCEEEEEEEEE-TTEEEEEEEEECCCC--------CCGGGCSE
T ss_pred             cceEEEEECcCCCCHHHHHHHHHhCCCCCCCc-CCceeeEEEEEEEEE-CCEEEEEEEEeCCCcHHHHHHHHHHccCCCE
Confidence            34899999999999999999999876532221 122222222222333 443  6889999998877655444  88999


Q ss_pred             EEEEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363           94 ALVVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        94 ~l~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~  139 (240)
                      +++|+|++++.+..+ ..++..+.....  ...|+++|+||+|....
T Consensus        87 ii~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~  131 (180)
T 2g6b_A           87 LLLLYDVTNKASFDNIQAWLTEIHEYAQ--HDVALMLLGNKVDSAHE  131 (180)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECCSTTSC
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEECcccCcc
Confidence            999999986544443 344455554432  34689999999996653

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=99.66  E-value=3.6e-15  Score=110.20  Aligned_cols=116  Identities=22%  Similarity=0.194  Sum_probs=68.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCc--EEEEEeCCCCCCCCCCC--cC--CCce
Q 036363           19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQ--VVNVIDTPGLFDFSAGS--EF--DEIH   92 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~--~~--~~~~   92 (240)
                      ..+|+++|++|+|||||+|++++....... ...+.+...  ....+ ++.  .+.+|||||........  ..  ..+|
T Consensus         4 ~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~-~~~~~~~~~--~~~~~-~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~   79 (175)
T 2nzj_A            4 LYRVVLLGDPGVGKTSLASLFAGKQERDLH-EQLGEDVYE--RTLTV-DGEDTTLVVVDTWEAEKLDKSWSQESCLQGGS   79 (175)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHCC-----C-CCSSSSEEE--EEEEE-TTEEEEEEEECCC-------CHHHHHTTTSCS
T ss_pred             EEEEEEECCCCccHHHHHHHHhcCCCcccc-CccccceeE--EEEEE-CCEEEEEEEEecCCCCccchhhhHHhhcccCC
Confidence            489999999999999999999987653322 223333322  22333 443  67899999987642111  11  7789


Q ss_pred             EEEEEEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363           93 AALVVFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        93 ~~l~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~  139 (240)
                      ++++|++++++.+.... .++..+..... ....|+++|+||+|....
T Consensus        80 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~~piilv~NK~Dl~~~  126 (175)
T 2nzj_A           80 AYVIVYSIADRGSFESASELRIQLRRTHQ-ADHVPIILVGNKADLARC  126 (175)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHCC-----CCEEEEEECTTCTTT
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhhc-cCCCCEEEEEEChhhccc
Confidence            99999999865554443 33333433211 123679999999996543

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=99.66  E-value=8.1e-15  Score=109.99  Aligned_cols=116  Identities=20%  Similarity=0.193  Sum_probs=70.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceE
Q 036363           18 GVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHA   93 (240)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~   93 (240)
                      ...+|+++|.+|+|||||+|+|++.........   .+.........+ ++  ..+.+|||||...+......  ..+|+
T Consensus        20 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~---t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   95 (190)
T 3con_A           20 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDP---TIEDSYRKQVVI-DGETCLLDILDTAGQEEYSAMRDQYMRTGEG   95 (190)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCT---TCCEEEEEEEEE-TTEEEEEEEEECCC-----------CTTCSE
T ss_pred             ceeEEEEECcCCCCHHHHHHHHHcCCCccccCC---ccceEEEEEEEE-CCEEEEEEEEECCChHHHHHHHHHhhCcCCE
Confidence            347999999999999999999998754322111   111111223333 44  35889999998876555444  88999


Q ss_pred             EEEEEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           94 ALVVFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        94 ~l~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      +++|+++++..+..+. .++..+...... ...|+++|+||+|...
T Consensus        96 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~p~ilv~nK~Dl~~  140 (190)
T 3con_A           96 FLCVFAINNSKSFADINLYREQIKRVKDS-DDVPMVLVGNKCDLPT  140 (190)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHHTC-SCCCEEEEEECTTCSC
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECCcCCc
Confidence            9999999865554443 344444444321 2367999999999654

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=99.66  E-value=5.6e-16  Score=114.94  Aligned_cols=142  Identities=13%  Similarity=0.086  Sum_probs=89.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEE
Q 036363           19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAA   94 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~   94 (240)
                      ..+|+++|++|+|||||+|++++........  ...+.........+ ++  ..+.+|||||...+......  ..+|++
T Consensus        14 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~   90 (179)
T 2y8e_A           14 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQ--ATIGIDFLSKTMYL-EDRTVRLQLWDTAGQERFRSLIPSYIRDSTVA   90 (179)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCC--CCCSEEEEEEEEEE-TTEEEEEEEEEECCSGGGGGGSHHHHHTCSEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCC--CceeeEEEEEEEEE-CCeEEEEEEEECCCcHHHHHHHHHHhcCCCEE
Confidence            3799999999999999999999765433222  22233333333444 44  37889999998766544433  889999


Q ss_pred             EEEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCCcccHHHHhcccCCchHHHHHHHhCCcEEEEeCC
Q 036363           95 LVVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELEANDETLEDYLGRECPKPLKEILHLFDNRCVLFDNK  173 (240)
Q Consensus        95 l~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (240)
                      ++|+|++++.+... ..++..+....+.  ..|+++|+||+|.........+         ....+....+..++..+..
T Consensus        91 i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~nK~Dl~~~~~~~~~---------~~~~~~~~~~~~~~~~Sa~  159 (179)
T 2y8e_A           91 VVVYDITNTNSFHQTSKWIDDVRTERGS--DVIIMLVGNKTDLSDKRQVSTE---------EGERKAKELNVMFIETSAK  159 (179)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHTT--SSEEEEEEECGGGGGGCCSCHH---------HHHHHHHHHTCEEEEEBTT
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECCcccccCcCCHH---------HHHHHHHHcCCeEEEEeCC
Confidence            99999985444333 3444555444332  3679999999996543211111         1233344456666666655


Q ss_pred             C
Q 036363          174 T  174 (240)
Q Consensus       174 ~  174 (240)
                      .
T Consensus       160 ~  160 (179)
T 2y8e_A          160 A  160 (179)
T ss_dssp             T
T ss_pred             C
Confidence            4

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=99.66  E-value=6.2e-16  Score=117.40  Aligned_cols=142  Identities=10%  Similarity=0.065  Sum_probs=87.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeC--CcEEEEEeCCCCCCCCCCCcC--CCceEE
Q 036363           19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKD--GQVVNVIDTPGLFDFSAGSEF--DEIHAA   94 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~--~~~~~~   94 (240)
                      ..+|+++|++|+|||||++++++...........+.+.  ....... .  ...+.+|||||+..+......  ..+|++
T Consensus         8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~--~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   84 (203)
T 1zbd_A            8 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDF--KVKTIYR-NDKRIKLQIWDTAGLERYRTITTAYYRGAMGF   84 (203)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEE--EEEEEEE-TTEEEEEEEEEECCSGGGHHHHHTTGGGCSEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE--EEEEEEE-CCeEEEEEEEECCCchhhcchHHHhhcCCCEE
Confidence            47999999999999999999998765433222222222  2222333 3  347889999998765433222  789999


Q ss_pred             EEEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCCcccHHHHhcccCCchHHHHHHHhCCcEEEEeCC
Q 036363           95 LVVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELEANDETLEDYLGRECPKPLKEILHLFDNRCVLFDNK  173 (240)
Q Consensus        95 l~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (240)
                      ++|+|++++.+... ..++..+....  ....|+++|+||+|.........         .....+....+..++..+..
T Consensus        85 i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~piilv~nK~Dl~~~~~~~~---------~~~~~~~~~~~~~~~~~Sa~  153 (203)
T 1zbd_A           85 ILMYDITNEESFNAVQDWSTQIKTYS--WDNAQVLLVGNKCDMEDERVVSS---------ERGRQLADHLGFEFFEASAK  153 (203)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHS--CSSCEEEEEEECTTCTTSCCSCH---------HHHHHHHHHHTCEEEECBTT
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhc--CCCCCEEEEEECcccCcccccCH---------HHHHHHHHHCCCeEEEEECC
Confidence            99999986544443 23444444332  12368999999999654321111         12334444555566555544


Q ss_pred             C
Q 036363          174 T  174 (240)
Q Consensus       174 ~  174 (240)
                      .
T Consensus       154 ~  154 (203)
T 1zbd_A          154 D  154 (203)
T ss_dssp             T
T ss_pred             C
Confidence            3

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=99.66  E-value=6.4e-16  Score=117.16  Aligned_cols=115  Identities=20%  Similarity=0.109  Sum_probs=75.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCc--EEEEEeCCCCCCCCCCCcC--CCce
Q 036363           17 NGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQ--VVNVIDTPGLFDFSAGSEF--DEIH   92 (240)
Q Consensus        17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~--~~~~   92 (240)
                      ....+|+++|++|+|||||++++++.........+   +.......... ++.  .+.+|||||...+......  ..+|
T Consensus        18 ~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t---~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~   93 (201)
T 2q3h_A           18 GRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPT---AFDNFSAVVSV-DGRPVRLQLCDTAGQDEFDKLRPLCYTNTD   93 (201)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHC--------CC---SSEEEEEEEEE-TTEEEEEEEEECCCSTTCSSSGGGGGTTCS
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCc---ccceeEEEEEE-CCEEEEEEEEECCCCHHHHHHhHhhcCCCc
Confidence            34589999999999999999999987632221111   11111122333 443  5679999999887665544  8899


Q ss_pred             EEEEEEECCCCCCHHHH--HHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           93 AALVVFSVRSRFSQEEE--ATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        93 ~~l~v~~~~~~~~~~~~--~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      ++++|+|++++.+..+.  .++..+.....   ..|+++|+||+|...
T Consensus        94 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~  138 (201)
T 2q3h_A           94 IFLLCFSVVSPSSFQNVSEKWVPEIRCHCP---KAPIILVGTQSDLRE  138 (201)
T ss_dssp             EEEEEEETTCHHHHHHHHHTHHHHHHHHCS---SSCEEEEEECGGGGG
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEECHhhhh
Confidence            99999999866555543  34555554432   367999999999654

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.66  E-value=9.8e-16  Score=121.87  Aligned_cols=108  Identities=20%  Similarity=0.192  Sum_probs=79.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC-----------
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF-----------   88 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~-----------   88 (240)
                      .+|+++|.+|+|||||+|+|+|.....+.  ..+.|.........+ .+..+.+|||||+.++......           
T Consensus         4 ~~I~lvG~~n~GKSTLin~l~g~~~~v~~--~~g~t~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~   80 (274)
T 3i8s_A            4 LTIGLIGNPNSGKTTLFNQLTGSRQRVGN--WAGVTVERKEGQFST-TDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY   80 (274)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHTTCEEEEE--CTTSSSEEEEEEEEC-SSCEEEEEECCCCSCSCC----CCHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCcccCC--CCCeeEEEEEEEEEe-CCCceEEEECcCCCccccccccCCHHHHHHHHH
Confidence            79999999999999999999998743332  245666666666666 6788999999999988743211           


Q ss_pred             ---CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363           89 ---DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDEL  137 (240)
Q Consensus        89 ---~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~  137 (240)
                         ..+|++++|+|+++  .......+..+.+.     ..|+++|+||+|..
T Consensus        81 ~~~~~~d~ii~VvD~~~--~~~~~~~~~~l~~~-----~~p~ivv~NK~Dl~  125 (274)
T 3i8s_A           81 ILSGDADLLINVVDASN--LERNLYLTLQLLEL-----GIPCIVALNMLDIA  125 (274)
T ss_dssp             HHHTCCSEEEEEEEGGG--HHHHHHHHHHHHHH-----TCCEEEEEECHHHH
T ss_pred             HhhcCCCEEEEEecCCC--hHHHHHHHHHHHhc-----CCCEEEEEECccch
Confidence               68999999999984  12333444444433     26799999999954

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=99.66  E-value=1.8e-15  Score=124.99  Aligned_cols=127  Identities=13%  Similarity=0.118  Sum_probs=73.4

Q ss_pred             ccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCC--cce---------------------------
Q 036363            6 IDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSG--VTS---------------------------   56 (240)
Q Consensus         6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~--~t~---------------------------   56 (240)
                      .++++++.+     ..|+|||++|||||||+|+|+|....+.+.....  .+.                           
T Consensus        26 ~l~~i~~~l-----p~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (360)
T 3t34_A           26 ALPTLWDSL-----PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDF  100 (360)
T ss_dssp             CC----CCC-----CEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCH
T ss_pred             ccccccccC-----CEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCH
Confidence            344444555     3999999999999999999999765333321110  000                           


Q ss_pred             -----------------------eEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC---------------CCceEEEEEE
Q 036363           57 -----------------------TCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF---------------DEIHAALVVF   98 (240)
Q Consensus        57 -----------------------~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~---------------~~~~~~l~v~   98 (240)
                                             .........+....+.+|||||+..+......               ..+|++++|+
T Consensus       101 ~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv  180 (360)
T 3t34_A          101 AAVRKEIQDETDRETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAI  180 (360)
T ss_dssp             HHHHHHHHHHHHHTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEE
T ss_pred             HHHHHHHHHHHHHhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEe
Confidence                                   00001111112446899999999987442111               7899999998


Q ss_pred             ECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCC
Q 036363           99 SVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEAN  140 (240)
Q Consensus        99 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~  140 (240)
                      ++.+. .......+..+... .. ...++++|+||+|.+.+.
T Consensus       181 ~~~~~-~~~~~~~~~l~~~~-~~-~~~~~i~V~nK~Dl~~~~  219 (360)
T 3t34_A          181 SPANQ-DLATSDAIKISREV-DP-SGDRTFGVLTKIDLMDKG  219 (360)
T ss_dssp             EETTS-CGGGCHHHHHHHHS-CT-TCTTEEEEEECGGGCCTT
T ss_pred             ecccC-CcCCHHHHHHHHHh-cc-cCCCEEEEEeCCccCCCc
Confidence            77522 22222333333332 22 235799999999977543

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=99.66  E-value=8e-16  Score=118.04  Aligned_cols=141  Identities=16%  Similarity=0.144  Sum_probs=89.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAAL   95 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~l   95 (240)
                      .+|+|+|.+|+|||||+++++...+.....++.+.....  ..... ++  ..+.+|||+|...+......  +.+++++
T Consensus        14 ~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~--k~~~~-~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~i   90 (216)
T 4dkx_A           14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLS--KTMYL-EDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAV   90 (216)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCC----------CEE--EEEEC-SSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEE
T ss_pred             EEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEE--EEEEe-cceEEEEEEEECCCchhhhhHHHHHhccccEEE
Confidence            799999999999999999998765433322222222211  22222 33  36789999999888765544  8999999


Q ss_pred             EEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCCcccHHHHhcccCCchHHHHHHHhCCcEEEEeCCC
Q 036363           96 VVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELEANDETLEDYLGRECPKPLKEILHLFDNRCVLFDNKT  174 (240)
Q Consensus        96 ~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (240)
                      +|++++++.+... ..++..+....+.  ..|++||.||+|.........+         ....+....+..|+..+...
T Consensus        91 lv~di~~~~Sf~~i~~~~~~i~~~~~~--~~piilVgNK~Dl~~~r~V~~~---------e~~~~a~~~~~~~~e~SAkt  159 (216)
T 4dkx_A           91 VVYDITNVNSFQQTTKWIDDVRTERGS--DVIIMLVGNKTDLADKRQVSIE---------EGERKAKELNVMFIETSAKA  159 (216)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHTT--SSEEEEEEECTTCGGGCCSCHH---------HHHHHHHHHTCEEEEEBTTT
T ss_pred             EEeecchhHHHHHHHHHHHHHHHhcCC--CCeEEEEeeccchHhcCcccHH---------HHhhHHHHhCCeeEEEeCCC
Confidence            9999997766665 4566666665544  3689999999995433211111         22344555566666555543

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=99.65  E-value=4.5e-15  Score=110.69  Aligned_cols=115  Identities=14%  Similarity=0.149  Sum_probs=56.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEE
Q 036363           19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAA   94 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~   94 (240)
                      ..+|+++|++|+|||||++++++........  .+.+.........+ ++  ..+.+|||||...+......  ..+|++
T Consensus         8 ~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~--~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   84 (183)
T 2fu5_C            8 LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFI--STIGIDFKIRTIEL-DGKRIKLQIWDTAGQERFRTITTAYYRGAMGI   84 (183)
T ss_dssp             EEEEEEECCCCC----------------CHH--HHHCEEEEEEEEEE-TTEEEEEEEEEC---------CCTTTTTCSEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCCCCC--CcccceeEEEEEEE-CCEEEEEEEEcCCCChhhhhhHHHHHhcCCEE
Confidence            4899999999999999999999765322211  11222222333444 44  57889999999877655444  889999


Q ss_pred             EEEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           95 LVVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        95 l~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      ++|+|++++.+... ..++..+.....  ...|+++|+||+|...
T Consensus        85 i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~  127 (183)
T 2fu5_C           85 MLVYDITNEKSFDNIRNWIRNIEEHAS--ADVEKMILGNKCDVND  127 (183)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHSC--TTCEEEEEEEC--CCS
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECccCCc
Confidence            99999986544443 234444544322  2368999999999654

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.65  E-value=3e-16  Score=119.67  Aligned_cols=125  Identities=18%  Similarity=0.119  Sum_probs=78.3

Q ss_pred             ccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCC
Q 036363            6 IDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFS   83 (240)
Q Consensus         6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~   83 (240)
                      ...+..+.....  .+|+++|++|+|||||+|++++...........+...   ...... ++  ..+.+|||||...+.
T Consensus        14 ~~~~~~~~~~~~--~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~---~~~~~~-~~~~~~~~i~Dt~G~~~~~   87 (207)
T 2fv8_A           14 GTENLYFQSMIR--KKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENY---VADIEV-DGKQVELALWDTAGQEDYD   87 (207)
T ss_dssp             -----CGGGSEE--EEEEEEECTTSSHHHHHHHHHHSSCC-------CCEE---EEEEEE-TTEEEEEEEEECTTCTTCT
T ss_pred             cccccccccccC--cEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceE---EEEEEE-CCEEEEEEEEECCCcHHHH
Confidence            344444544444  8999999999999999999998764322221111111   122333 44  367899999998876


Q ss_pred             CCCcC--CCceEEEEEEECCCCCCHHHH--HHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363           84 AGSEF--DEIHAALVVFSVRSRFSQEEE--ATLHSLQTLFGKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        84 ~~~~~--~~~~~~l~v~~~~~~~~~~~~--~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~  139 (240)
                      .....  ..+|++++|+|++++.+....  .++..+.....   ..|+++|+||+|....
T Consensus        88 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~  144 (207)
T 2fv8_A           88 RLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCP---NVPIILVANKKDLRSD  144 (207)
T ss_dssp             TTGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHST---TCCEEEEEECGGGGGC
T ss_pred             HHHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEchhhhcc
Confidence            55544  889999999999855444432  34445544322   3679999999996543

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.65  E-value=9.8e-16  Score=114.23  Aligned_cols=114  Identities=13%  Similarity=0.108  Sum_probs=75.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363           18 GVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAAL   95 (240)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l   95 (240)
                      ...+|+++|++|+|||||++++++.... ......+    .......+ ++..+.+|||||+..+......  ..+|+++
T Consensus        17 ~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~----~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   90 (183)
T 1moz_A           17 KELRILILGLDGAGKTTILYRLQIGEVV-TTKPTIG----FNVETLSY-KNLKLNVWDLGGQTSIRPYWRCYYADTAAVI   90 (183)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHTCCSEEE-EECSSTT----CCEEEEEE-TTEEEEEEEEC----CCTTGGGTTTTEEEEE
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCCcC-ccCCcCc----cceEEEEE-CCEEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence            3499999999999999999999976542 2222222    22233445 6788999999999887665444  8999999


Q ss_pred             EEEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           96 VVFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        96 ~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      +|+|++++.+.... ..+..+.... .....|+++|+||+|...
T Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~  133 (183)
T 1moz_A           91 FVVDSTDKDRMSTASKELHLMLQEE-ELQDAALLVFANKQDQPG  133 (183)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHTTSS-TTSSCEEEEEEECTTSTT
T ss_pred             EEEECCCHHHHHHHHHHHHHHHcCh-hhCCCeEEEEEECCCCCC
Confidence            99999877665542 3333332211 023478999999999654

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=99.65  E-value=3.8e-16  Score=116.05  Aligned_cols=119  Identities=22%  Similarity=0.239  Sum_probs=78.2

Q ss_pred             CCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CC
Q 036363           15 PSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DE   90 (240)
Q Consensus        15 ~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~   90 (240)
                      ++....+|+++|++|+|||||+|++++..........   +.........+ ++  ..+.+|||||...+......  ..
T Consensus         5 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t---~~~~~~~~~~~-~~~~~~~~~~Dt~G~~~~~~~~~~~~~~   80 (181)
T 2fn4_A            5 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPT---IEDSYTKICSV-DGIPARLDILDTAGQEEFGAMREQYMRA   80 (181)
T ss_dssp             CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTT---CCEEEEEEEEE-TTEEEEEEEEECCCTTTTSCCHHHHHHH
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCC---cCceEEEEEEE-CCEEEEEEEEECCCchhhHHHHHHHHhh
Confidence            4445689999999999999999999987543222111   11111122333 44  36789999998877554443  78


Q ss_pred             ceEEEEEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           91 IHAALVVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        91 ~~~~l~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      +|++++|+++++..+... ..++..+...... ...|+++|+||+|...
T Consensus        81 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~  128 (181)
T 2fn4_A           81 GHGFLLVFAINDRQSFNEVGKLFTQILRVKDR-DDFPVVLVGNKADLES  128 (181)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHHHHHHHHHHTS-SCCCEEEEEECGGGGG
T ss_pred             CCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccccc
Confidence            899999999986444443 3444444343332 2367999999999654

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=99.65  E-value=1.3e-15  Score=112.10  Aligned_cols=142  Identities=21%  Similarity=0.128  Sum_probs=79.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC---CCceE
Q 036363           19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF---DEIHA   93 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~---~~~~~   93 (240)
                      ..+|+++|++|+|||||++++++.........  ..+.........+ ++  ..+.+|||||...+......   ..+|+
T Consensus         2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~   78 (169)
T 3q85_A            2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEM--ENSEDTYERRIMV-DKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDA   78 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCC--------------CEEEEEEEE-TTEEEEEEEECCCCC--------CHHHHHCSE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhccCcccccC--CCcCCeeeEEEEE-CCeEEEEEEEECCCccccchhhhhhhhccCCE
Confidence            37899999999999999999997654322222  1222223233334 44  36779999999887552222   67899


Q ss_pred             EEEEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCCcccHHHHhcccCCchHHHHHHHhCCcEEEEeC
Q 036363           94 ALVVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELEANDETLEDYLGRECPKPLKEILHLFDNRCVLFDN  172 (240)
Q Consensus        94 ~l~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (240)
                      +++|++++++.+... ..++..+...... ...|+++|+||+|.........         .....+....+..++..+.
T Consensus        79 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~---------~~~~~~~~~~~~~~~~~Sa  148 (169)
T 3q85_A           79 FLIVFSVTDRRSFSKVPETLLRLRAGRPH-HDLPVILVGNKSDLARSREVSL---------EEGRHLAGTLSCKHIETSA  148 (169)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSTT-SCCCEEEEEECTTCGGGCCSCH---------HHHHHHHHHTTCEEEECBT
T ss_pred             EEEEEECCChHHHHHHHHHHHHHHhcccC-CCCCEEEEeeCcchhhcccCCH---------HHHHHHHHHcCCcEEEecC
Confidence            999999986544433 3444444443321 2367999999999653321111         1233445555566655554


Q ss_pred             C
Q 036363          173 K  173 (240)
Q Consensus       173 ~  173 (240)
                      .
T Consensus       149 ~  149 (169)
T 3q85_A          149 A  149 (169)
T ss_dssp             T
T ss_pred             c
Confidence            4

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.65  E-value=1.6e-15  Score=114.39  Aligned_cols=117  Identities=12%  Similarity=0.050  Sum_probs=75.8

Q ss_pred             CCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCce
Q 036363           15 PSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIH   92 (240)
Q Consensus        15 ~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~   92 (240)
                      ......+|+++|++|+|||||++++++..... ..    .|.........+ .+..+.+|||||...+......  ..+|
T Consensus        25 ~~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~-~~----~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   98 (192)
T 2b6h_A           25 FGKKQMRILMVGLDAAGKTTILYKLKLGEIVT-TI----PTIGFNVETVEY-KNICFTVWDVGGQDKIRPLWRHYFQNTQ   98 (192)
T ss_dssp             TTTSCEEEEEEESTTSSHHHHHHHHCSSCCEE-EE----EETTEEEEEEEE-TTEEEEEEECC-----CTTHHHHHHTCC
T ss_pred             ccCCccEEEEECCCCCCHHHHHHHHHhCCccc-cC----CcCceeEEEEEE-CCEEEEEEECCCCHhHHHHHHHHhccCC
Confidence            33445999999999999999999998766432 11    122233344555 7788999999999877655433  8899


Q ss_pred             EEEEEEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           93 AALVVFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        93 ~~l~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      ++++|+|++++.+.... ..+..+.... .....|+++|+||+|...
T Consensus        99 ~iilv~D~~~~~s~~~~~~~l~~~~~~~-~~~~~piilv~NK~Dl~~  144 (192)
T 2b6h_A           99 GLIFVVDSNDRERVQESADELQKMLQED-ELRDAVLLVFANKQDMPN  144 (192)
T ss_dssp             EEEEEEETTCGGGHHHHHHHHHHHHTCG-GGTTCEEEEEEECTTSTT
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHhccc-ccCCCeEEEEEECCCCCC
Confidence            99999999866555432 3333332211 112468999999999644

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.65  E-value=2.1e-15  Score=118.90  Aligned_cols=109  Identities=20%  Similarity=0.256  Sum_probs=79.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC----------
Q 036363           19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF----------   88 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~----------   88 (240)
                      ..+|+++|++|+|||||+|+|+|.....+..  .+.|.......... .+..+.+|||||+..+......          
T Consensus         5 ~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~--pg~tv~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~   81 (258)
T 3a1s_A            5 MVKVALAGCPNVGKTSLFNALTGTKQYVANW--PGVTVEKKEGVFTY-KGYTINLIDLPGTYSLGYSSIDEKIARDYLLK   81 (258)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTTCEEEEEC--TTSCCEEEEEEEEE-TTEEEEEEECCCCSSCCSSSHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHCCCCcccCC--CCceEEEEEEEEEE-CCeEEEEEECCCcCccCCCCHHHHHHHHHHhh
Confidence            3789999999999999999999977543332  36666666555655 6789999999999988654311          


Q ss_pred             CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363           89 DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDEL  137 (240)
Q Consensus        89 ~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~  137 (240)
                      ..+|++++|+|+++ + .....++..+.+     ...|+++|+||+|..
T Consensus        82 ~~~d~ii~V~D~t~-~-~~~~~~~~~l~~-----~~~pvilv~NK~Dl~  123 (258)
T 3a1s_A           82 GDADLVILVADSVN-P-EQSLYLLLEILE-----MEKKVILAMTAIDEA  123 (258)
T ss_dssp             SCCSEEEEEEETTS-C-HHHHHHHHHHHT-----TTCCEEEEEECHHHH
T ss_pred             cCCCEEEEEeCCCc-h-hhHHHHHHHHHh-----cCCCEEEEEECcCCC
Confidence            58999999999984 2 222333333332     136799999999954

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=99.65  E-value=9.5e-16  Score=112.43  Aligned_cols=115  Identities=23%  Similarity=0.122  Sum_probs=63.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEE
Q 036363           19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAA   94 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~   94 (240)
                      ..+|+++|++|+|||||+|++++....... ...+.+..   ..... .+  ..+.+|||||...+......  ..+|++
T Consensus         2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~---~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   76 (166)
T 3q72_A            2 VYKVLLLGAPGVGKSALARIFGGVEDGPEA-EAAGHTYD---RSIVV-DGEEASLMVYDIWEQDGGRWLPGHCMAMGDAY   76 (166)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHCCC-----------CEEE---EEEEE-TTEEEEEEEEECC---------------CCEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHcCccccCCC-CccccceE---EEEEE-CCEEEEEEEEECCCCccchhhhhhhhhhCCEE
Confidence            379999999999999999999987643221 12222222   12222 33  36789999999887655544  889999


Q ss_pred             EEEEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363           95 LVVFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        95 l~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~  139 (240)
                      ++|++++++.+.... .++..+..... ....|+++|+||+|....
T Consensus        77 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~  121 (166)
T 3q72_A           77 VIVYSVTDKGSFEKASELRVQLRRARQ-TDDVPIILVGNKSDLVRS  121 (166)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHCC----CCCEEEEEECTTCCSS
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEeccccccc
Confidence            999999865544432 33344433221 223679999999996544

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.65  E-value=4.3e-15  Score=111.30  Aligned_cols=113  Identities=13%  Similarity=0.112  Sum_probs=76.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEEEE
Q 036363           19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAALV   96 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~   96 (240)
                      ..+|+++|++|+|||||+|++++.... ....+.+    .......+ ++..+.+|||||...+......  ..+|++++
T Consensus        16 ~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~----~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~   89 (187)
T 1zj6_A           16 EHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIG----SNVEEIVI-NNTRFLMWDIGGQESLRSSWNTYYTNTEFVIV   89 (187)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSC----SSCEEEEE-TTEEEEEEECCC----CGGGHHHHTTCCEEEE
T ss_pred             ccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCc----cceEEEEE-CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence            489999999999999999999976654 2222222    22233445 7788999999999876655443  88999999


Q ss_pred             EEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           97 VFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        97 v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      |+|++++.+.... ..+..+..... ....|+++|+||+|...
T Consensus        90 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~  131 (187)
T 1zj6_A           90 VVDSTDRERISVTREELYKMLAHED-LRKAGLLIFANKQDVKE  131 (187)
T ss_dssp             EEETTCTTTHHHHHHHHHHHHTSGG-GTTCEEEEEEECTTSTT
T ss_pred             EEeCCCHHHHHHHHHHHHHHHhchh-hCCCeEEEEEECCCCcC
Confidence            9999977666543 33333332211 13478999999999654

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=99.65  E-value=1e-15  Score=111.92  Aligned_cols=140  Identities=19%  Similarity=0.217  Sum_probs=86.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAAL   95 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~l   95 (240)
                      .+|+++|++|+|||||+|.+++..........   +.......... ++  ..+.+|||||...+......  ..+|+++
T Consensus         4 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i   79 (166)
T 2ce2_X            4 YKLVVVGAGGVGKSALTIQLIQNHFVDECDPT---IEDSYRKQVVI-DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL   79 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSSCCSCCCTT---CCEEEEEEEEE-TTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCcCccccCCc---cceEEEEEEEE-CCEEEEEEEEECCCchhhhHHHHHhhccCCEEE
Confidence            68999999999999999999987543222211   11111222233 33  35789999998765443332  7789999


Q ss_pred             EEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCCcccHHHHhcccCCchHHHHHHHhCCcEEEEeCCC
Q 036363           96 VVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELEANDETLEDYLGRECPKPLKEILHLFDNRCVLFDNKT  174 (240)
Q Consensus        96 ~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (240)
                      +|+++++..+... ..++..+...... ...|+++|+||+|..... ..         ......+....+.+++..+...
T Consensus        80 ~v~d~~~~~~~~~~~~~~~~i~~~~~~-~~~p~iiv~nK~Dl~~~~-~~---------~~~~~~~~~~~~~~~~~~Sa~~  148 (166)
T 2ce2_X           80 CVFAINNTKSFEDIHQYREQIKRVKDS-DDVPMVLVGNKSDLAART-VE---------SRQAQDLARSYGIPYIETSAKT  148 (166)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHTC-SCCCEEEEEECTTCSCCC-SC---------HHHHHHHHHHHTCCEEEECTTT
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEEchhhhhcc-cC---------HHHHHHHHHHcCCeEEEecCCC
Confidence            9999985544443 3444455444332 236799999999965432 11         1123344455566666666554

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=99.65  E-value=1.4e-15  Score=114.21  Aligned_cols=118  Identities=14%  Similarity=0.093  Sum_probs=76.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeC-----------CcEEEEEeCCCCCCCCCCC
Q 036363           18 GVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKD-----------GQVVNVIDTPGLFDFSAGS   86 (240)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~-----------~~~~~l~DtpG~~~~~~~~   86 (240)
                      ...+|+++|++|+|||||+|++++...........+.+.. ....... .           ...+.+|||||+..+....
T Consensus        10 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~   87 (195)
T 3bc1_A           10 YLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFR-EKRVVYR-ANGPDGAVGRGQRIHLQLWDTAGLERFRSLT   87 (195)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE-EEEEEEC-TTSCCCSSCCCEEEEEEEEEECCSGGGHHHH
T ss_pred             eeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeee-eEEEEEe-cCCcccccccCcEEEEEEEeCCCcHHHHHHH
Confidence            3589999999999999999999986543222222221111 0122222 3           2478999999986553322


Q ss_pred             cC--CCceEEEEEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           87 EF--DEIHAALVVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        87 ~~--~~~~~~l~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      ..  ..+|++++|+|++++.+..+ ..++..+..... ....|+++|+||+|...
T Consensus        88 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~  141 (195)
T 3bc1_A           88 TAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAY-SENPDIVLCGNKSDLED  141 (195)
T ss_dssp             HHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSS-SSSCCEEEEEECTTCGG
T ss_pred             HHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccc
Confidence            22  78999999999986555444 344444544332 12367999999999654

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.65  E-value=1.2e-15  Score=121.22  Aligned_cols=109  Identities=22%  Similarity=0.239  Sum_probs=79.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC----------C
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF----------D   89 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~----------~   89 (240)
                      .+|+++|++|+|||||+|+|+|.....+.  ..+.|.........+ .+..+.+|||||+.++......          .
T Consensus         4 ~~i~lvG~~g~GKTTL~n~l~g~~~~~~~--~~~~t~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~   80 (271)
T 3k53_A            4 KTVALVGNPNVGKTTIFNALTGLRQHVGN--WPGVTVEKKEGIMEY-REKEFLVVDLPGIYSLTAHSIDELIARNFILDG   80 (271)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHTTCEEEEE--CTTSSCEEEEEEEEE-TTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTT
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCCcccCC--CCCeEEEeeEEEEEE-CCceEEEEeCCCccccccCCHHHHHHHHhhhcc
Confidence            79999999999999999999998753332  245566666666666 7888999999999987663322          6


Q ss_pred             CceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363           90 EIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDEL  137 (240)
Q Consensus        90 ~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~  137 (240)
                      .+|++++|+|+++.  ......+..+.+. +   ..|+++|+||+|..
T Consensus        81 ~~d~vi~v~D~~~~--~~~~~~~~~~~~~-~---~~p~ilv~NK~Dl~  122 (271)
T 3k53_A           81 NADVIVDIVDSTCL--MRNLFLTLELFEM-E---VKNIILVLNKFDLL  122 (271)
T ss_dssp             CCSEEEEEEEGGGH--HHHHHHHHHHHHT-T---CCSEEEEEECHHHH
T ss_pred             CCcEEEEEecCCcc--hhhHHHHHHHHhc-C---CCCEEEEEEChhcC
Confidence            79999999999842  2233333333322 1   16799999999943

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=99.64  E-value=8.7e-16  Score=112.47  Aligned_cols=142  Identities=15%  Similarity=0.138  Sum_probs=86.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCc--EEEEEeCCCCCCCCCCCcC--CCceEE
Q 036363           19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQ--VVNVIDTPGLFDFSAGSEF--DEIHAA   94 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~--~~~~~~   94 (240)
                      ..+|+++|++|+|||||+|++++...........   .......... .+.  .+.+|||||...+......  ..+|++
T Consensus         3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~   78 (167)
T 1kao_A            3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTI---EDFYRKEIEV-DSSPSVLEILDTAGTEQFASMRDLYIKNGQGF   78 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTC---CEEEEEEEEE-TTEEEEEEEEECCCTTCCHHHHHHHHHHCSEE
T ss_pred             EEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCc---ceeEEEEEEE-CCEEEEEEEEECCCchhhHHHHHHHhccCCEE
Confidence            3799999999999999999999765433222211   1111223333 443  4789999998765433322  778999


Q ss_pred             EEEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCCcccHHHHhcccCCchHHHHHHHhCCcEEEEeCC
Q 036363           95 LVVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELEANDETLEDYLGRECPKPLKEILHLFDNRCVLFDNK  173 (240)
Q Consensus        95 l~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (240)
                      ++|++++++.+... ...+..+...... ...|+++|+||+|.........         .....+....+.+++..+..
T Consensus        79 i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~~~~---------~~~~~~~~~~~~~~~~~Sa~  148 (167)
T 1kao_A           79 ILVYSLVNQQSFQDIKPMRDQIIRVKRY-EKVPVILVGNKVDLESEREVSS---------SEGRALAEEWGCPFMETSAK  148 (167)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHTTT-SCCCEEEEEECGGGGGGCCSCH---------HHHHHHHHHHTSCEEEECTT
T ss_pred             EEEEeCCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECCcccccccCCH---------HHHHHHHHHhCCCEEEecCC
Confidence            99999986544443 3444455544332 2367999999999653321111         11233444455566666655


Q ss_pred             C
Q 036363          174 T  174 (240)
Q Consensus       174 ~  174 (240)
                      .
T Consensus       149 ~  149 (167)
T 1kao_A          149 S  149 (167)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=99.64  E-value=5.8e-16  Score=115.78  Aligned_cols=116  Identities=16%  Similarity=0.159  Sum_probs=76.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceE
Q 036363           18 GVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHA   93 (240)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~   93 (240)
                      ...+|+++|++|+|||||+|++++........  ...+.........+ ++  ..+.+|||||...+......  ..+|+
T Consensus         9 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   85 (186)
T 2bme_A            9 FLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSN--HTIGVEFGSKIINV-GGKYVKLQIWDTAGQERFRSVTRSYYRGAAG   85 (186)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSSCCTTCC--CCSEEEEEEEEEEE-TTEEEEEEEEEECCSGGGHHHHHTTSTTCSE
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcCCCCCCCC--CccceEEEEEEEEE-CCEEEEEEEEeCCCcHHHHHHHHHHHhcCCE
Confidence            34899999999999999999999876433222  22222232333334 44  47889999998765433222  78999


Q ss_pred             EEEEEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           94 ALVVFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        94 ~l~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      +++|+|++++.+.... .++..+.....  ...|+++|+||+|...
T Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~  129 (186)
T 2bme_A           86 ALLVYDITSRETYNALTNWLTDARMLAS--QNIVIILCGNKKDLDA  129 (186)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECGGGGG
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECccccc
Confidence            9999999865444432 34444444322  2468999999999643

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.64  E-value=4.4e-16  Score=129.68  Aligned_cols=126  Identities=17%  Similarity=0.220  Sum_probs=76.1

Q ss_pred             cCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCC--CCCcceeEEEEEEEEeC-C--cEEEEEeCCCCCC
Q 036363            7 DDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRAS--SSGVTSTCEMHRTVLKD-G--QVVNVIDTPGLFD   81 (240)
Q Consensus         7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~--~~~~t~~~~~~~~~~~~-~--~~~~l~DtpG~~~   81 (240)
                      +++++|.+.+|...+++|+|+||+|||||+|+|+|.........  ..+.+..  ...+.... +  ..++++|+||+..
T Consensus        30 L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~--~i~~v~Q~~~l~~~ltv~D~~~~g~  107 (427)
T 2qag_B           30 DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQ--SNTYDLQESNVRLKLTIVSTVGFGD  107 (427)
T ss_dssp             HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEE--EEEEEEEC--CEEEEEEEEEECCCC
T ss_pred             cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEe--eEEEEeecCccccccchhhhhhhhh
Confidence            78899999999555599999999999999999999853211111  1122221  11121112 1  2678999999976


Q ss_pred             CCCC-------------------------Cc---C---CCceEEE-EEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEE
Q 036363           82 FSAG-------------------------SE---F---DEIHAAL-VVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIV  129 (240)
Q Consensus        82 ~~~~-------------------------~~---~---~~~~~~l-~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~  129 (240)
                      ....                         ..   .   ..+|+++ ++.++..+++..+..+++.+.      ...|+|+
T Consensus       108 ~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~------~~~~vI~  181 (427)
T 2qag_B          108 QINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLD------SKVNIIP  181 (427)
T ss_dssp             -CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTC------SCSEEEE
T ss_pred             ccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHh------hCCCEEE
Confidence            4221                         00   0   2245544 455666778888877766663      2368999


Q ss_pred             EEeCCCCCCCC
Q 036363          130 VFSGRDELEAN  140 (240)
Q Consensus       130 v~~~~D~~~~~  140 (240)
                      |+||+|.+.+.
T Consensus       182 Vi~KtD~Lt~~  192 (427)
T 2qag_B          182 IIAKADAISKS  192 (427)
T ss_dssp             EESCGGGSCHH
T ss_pred             EEcchhccchH
Confidence            99999988653

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.64  E-value=1.3e-15  Score=129.67  Aligned_cols=116  Identities=19%  Similarity=0.225  Sum_probs=67.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCc----------CC
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSE----------FD   89 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~----------~~   89 (240)
                      .+|+++|++|+|||||+|+|++........ ..++|.........+ ++..+.+|||||+.++.....          ..
T Consensus       234 ~kV~ivG~~nvGKSSLln~L~~~~~a~vs~-~~gtT~d~~~~~i~~-~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~~  311 (476)
T 3gee_A          234 VSTVIAGKPNAGKSTLLNTLLGQERAIVSH-MPGTTRDYIEECFIH-DKTMFRLTDTAGLREAGEEIEHEGIRRSRMKMA  311 (476)
T ss_dssp             EEEEEECCTTSSHHHHHHHCC-------------------CEEEEE-TTEEEEEEC--------------------CCCS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCcccCC-CCCceEEEEEEEEEE-CCeEEEEEECCCCCcchhHHHHHHHHHHHhhcc
Confidence            789999999999999999999975322221 234555555555666 888999999999987543221          18


Q ss_pred             CceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCC
Q 036363           90 EIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEAN  140 (240)
Q Consensus        90 ~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~  140 (240)
                      .+|++++|+|++++.+......+..+...+.   ..|+++|+||+|.....
T Consensus       312 ~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~---~~piIvV~NK~Dl~~~~  359 (476)
T 3gee_A          312 EADLILYLLDLGTERLDDELTEIRELKAAHP---AAKFLTVANKLDRAANA  359 (476)
T ss_dssp             SCSEEEEEEETTTCSSGGGHHHHHHHHHHCT---TSEEEEEEECTTSCTTT
T ss_pred             cCCEEEEEEECCCCcchhhhHHHHHHHHhcC---CCCEEEEEECcCCCCcc
Confidence            8999999999998777743323333333333   36899999999966543

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=99.64  E-value=4.7e-16  Score=114.09  Aligned_cols=114  Identities=18%  Similarity=0.173  Sum_probs=75.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEE-EEEEEeC--CcEEEEEeCCCCCCCCCCCcC--CCceE
Q 036363           19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM-HRTVLKD--GQVVNVIDTPGLFDFSAGSEF--DEIHA   93 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~l~DtpG~~~~~~~~~~--~~~~~   93 (240)
                      ..+|+++|++|+|||||+|++++.........    |....+ ..... +  ...+.+|||||...+......  ..+|+
T Consensus         3 ~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~----t~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~   77 (167)
T 1c1y_A            3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDP----TIEDSYRKQVEV-DCQQCMLEILDTAGTEQFTAMRDLYMKNGQG   77 (167)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCSCCC----CSEEEEEEEEES-SSCEEEEEEEEECSSCSSTTHHHHHHHHCSE
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCC----CccceEEEEEEE-CCEEEEEEEEECCChHHHHHHHHHHhccCCE
Confidence            37999999999999999999998654322221    111111 22222 3  336789999998876554333  78899


Q ss_pred             EEEEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           94 ALVVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        94 ~l~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      +++|++++++.+... ..++..+...... ...|+++|+||+|...
T Consensus        78 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~  122 (167)
T 1c1y_A           78 FALVYSITAQSTFNDLQDLREQILRVKDT-EDVPMILVGNKCDLED  122 (167)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHCC-SCCCEEEEEECTTCGG
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhhCc-CCCcEEEEEECccccc
Confidence            999999986544443 3444555554332 2367999999999654

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.64  E-value=2.7e-15  Score=113.08  Aligned_cols=115  Identities=16%  Similarity=0.074  Sum_probs=78.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceE
Q 036363           18 GVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHA   93 (240)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~   93 (240)
                      ...+|+++|++|+|||||++++++...........+...   .....+ ++  ..+.+|||||...+......  ..+|+
T Consensus        17 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~---~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   92 (194)
T 2atx_A           17 LMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY---AVSVTV-GGKQYLLGLYDTAGQEDYDRLRPLSYPMTDV   92 (194)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE---EEEEES-SSCEEEEEEECCCCSSSSTTTGGGGCTTCSE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee---EEEEEE-CCEEEEEEEEECCCCcchhHHHHHhcCCCCE
Confidence            447999999999999999999998754322222111111   122333 33  46789999999887665544  88999


Q ss_pred             EEEEEECCCCCCHHHH--HHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363           94 ALVVFSVRSRFSQEEE--ATLHSLQTLFGKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        94 ~l~v~~~~~~~~~~~~--~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~  139 (240)
                      +++|+|++++.+....  .++..+....+   ..|+++|+||+|....
T Consensus        93 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~  137 (194)
T 2atx_A           93 FLICFSVVNPASFQNVKEEWVPELKEYAP---NVPFLLIGTQIDLRDD  137 (194)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHST---TCCEEEEEECTTSTTC
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEChhhccc
Confidence            9999999865554443  34555555432   3679999999996543

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.63  E-value=3.5e-16  Score=115.27  Aligned_cols=117  Identities=23%  Similarity=0.197  Sum_probs=75.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEE
Q 036363           19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAA   94 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~   94 (240)
                      ..+|+++|++|+|||||+|++++...........+.+..   ..... .+  ..+.+|||||...+......  ..+|++
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~---~~~~~-~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~   78 (172)
T 2erx_A            3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR---QVISC-DKSICTLQITDTTGSHQFPAMQRLSISKGHAF   78 (172)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEE---EEEEE-TTEEEEEEEEECCSCSSCHHHHHHHHHHCSEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEE---EEEEE-CCEEEEEEEEECCCchhhHHHHHHhcccCCEE
Confidence            479999999999999999999987643322222222211   11222 33  36789999998765433322  778999


Q ss_pred             EEEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363           95 LVVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        95 l~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~  139 (240)
                      ++|++++++.+... ..++..+.+..+.....|+++|+||+|....
T Consensus        79 i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~  124 (172)
T 2erx_A           79 ILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPS  124 (172)
T ss_dssp             EEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGG
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccc
Confidence            99999985544433 3455555554432224679999999996543

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.63  E-value=2.5e-15  Score=127.24  Aligned_cols=111  Identities=23%  Similarity=0.281  Sum_probs=78.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCC--cC---------
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGS--EF---------   88 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~--~~---------   88 (240)
                      .+|+|||.+|+|||||+|+|++....... ...+.|....+....| ++..+.+|||||+.......  ..         
T Consensus         2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~-~~~g~T~d~~~~~~~~-~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~   79 (439)
T 1mky_A            2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVE-DEEGVTRDPVQDTVEW-YGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMI   79 (439)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHC---------------CCSEEEEEE-TTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCceec-CCCCCccceeeEEEEE-CCeEEEEEECCCccccccchHHHHHHHHHHHHH
Confidence            47999999999999999999997643222 2356676666677778 88899999999998642111  10         


Q ss_pred             CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363           89 DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDEL  137 (240)
Q Consensus        89 ~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~  137 (240)
                      ..+|++++|+|++.+++..+.....++...     ..|+++|+||+|..
T Consensus        80 ~~ad~il~V~D~~~~~~~~d~~i~~~l~~~-----~~p~ilv~NK~D~~  123 (439)
T 1mky_A           80 READLVLFVVDGKRGITKEDESLADFLRKS-----TVDTILVANKAENL  123 (439)
T ss_dssp             TTCSEEEEEEETTTCCCHHHHHHHHHHHHH-----TCCEEEEEESCCSH
T ss_pred             HhCCEEEEEEECCCCCCHHHHHHHHHHHHc-----CCCEEEEEeCCCCc
Confidence            899999999999988888876666666532     25799999999953

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.63  E-value=3e-15  Score=112.34  Aligned_cols=116  Identities=19%  Similarity=0.088  Sum_probs=78.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363           18 GVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAAL   95 (240)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l   95 (240)
                      ...+|+++|++|+|||||+|++++........    .|....+..... .+..+.+|||||...+......  ..+|+++
T Consensus        21 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~----~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   95 (188)
T 1zd9_A           21 EEMELTLVGLQYSGKTTFVNVIASGQFNEDMI----PTVGFNMRKITK-GNVTIKLWDIGGQPRFRSMWERYCRGVSAIV   95 (188)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCC----CCCSEEEEEEEE-TTEEEEEEEECCSHHHHTTHHHHHTTCSEEE
T ss_pred             CccEEEEECCCCCCHHHHHHHHHcCCCCCccC----CCCceeEEEEEe-CCEEEEEEECCCCHhHHHHHHHHHccCCEEE
Confidence            34899999999999999999999765432222    233333344455 7788999999998765544333  8899999


Q ss_pred             EEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363           96 VVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        96 ~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~  139 (240)
                      +|+|+++..+... ...+..+..... ....|+++|+||+|....
T Consensus        96 ~v~D~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~~  139 (188)
T 1zd9_A           96 YMVDAADQEKIEASKNELHNLLDKPQ-LQGIPVLVLGNKRDLPGA  139 (188)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGG-GTTCCEEEEEECTTSTTC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhCcc-cCCCCEEEEEECCCCccC
Confidence            9999986555443 233333322111 124679999999996543

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.63  E-value=1.2e-15  Score=123.26  Aligned_cols=118  Identities=19%  Similarity=0.220  Sum_probs=81.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCC-----CCCCcC--CCce
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDF-----SAGSEF--DEIH   92 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~-----~~~~~~--~~~~   92 (240)
                      .+|+++|++|+|||||+|++++....... ...+.|....+....+.++..+.+|||||...+     ......  ..+|
T Consensus         4 ~KI~lvG~~~vGKSSLi~~l~~~~~~~~~-~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ad   82 (307)
T 3r7w_A            4 SKLLLMGRSGSGKSSMRSIIFSNYSAFDT-RRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFTKQKDHIFQMVQ   82 (307)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHSCCCTGGG-GGCCCCCSEEEEEEEETTTEEEEEEEECCSHHHHHHHHTTTHHHHHTTCS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCccc-cCcCCccceEEEEEEeCCceEEEEEECCCcHHHhhhhhhhHHHHHhccCC
Confidence            79999999999999999999886322111 124456666655555435678999999999876     332222  7899


Q ss_pred             EEEEEEECCCCCCHHHHHH-HHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           93 AALVVFSVRSRFSQEEEAT-LHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        93 ~~l~v~~~~~~~~~~~~~~-l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      ++++|+|++++.+..+... ..++..........|+++|+||+|...
T Consensus        83 ~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~  129 (307)
T 3r7w_A           83 VLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQ  129 (307)
T ss_dssp             EEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSC
T ss_pred             EEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccc
Confidence            9999999997777666533 333333221122378999999999654

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=99.63  E-value=5.7e-15  Score=119.75  Aligned_cols=117  Identities=15%  Similarity=0.208  Sum_probs=69.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCC--CCcc--eeEE-----------------------------------
Q 036363           19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASS--SGVT--STCE-----------------------------------   59 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~--~~~t--~~~~-----------------------------------   59 (240)
                      ..+|+++|.+|+|||||+|+|+|....+.+...  ...+  ....                                   
T Consensus        24 ~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  103 (315)
T 1jwy_B           24 LPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEII  103 (315)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHHHH
T ss_pred             CCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHHHH
Confidence            379999999999999999999998753332210  0000  0000                                   


Q ss_pred             ------------------EEEEEEeCCcEEEEEeCCCCCCCCCC-----C-cC---------CCceEEEEEEEC-CCCCC
Q 036363           60 ------------------MHRTVLKDGQVVNVIDTPGLFDFSAG-----S-EF---------DEIHAALVVFSV-RSRFS  105 (240)
Q Consensus        60 ------------------~~~~~~~~~~~~~l~DtpG~~~~~~~-----~-~~---------~~~~~~l~v~~~-~~~~~  105 (240)
                                        ...+..+.+..+.+|||||+......     . ..         ..+|++++|+++ +..+.
T Consensus       104 ~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~  183 (315)
T 1jwy_B          104 RDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLA  183 (315)
T ss_dssp             HHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCST
T ss_pred             HHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchh
Confidence                              00011223457999999999763211     0 00         788999999987 44444


Q ss_pred             HHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCC
Q 036363          106 QEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELEAN  140 (240)
Q Consensus       106 ~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~  140 (240)
                      ..+ ...+..+.     ....|+++|+||+|.....
T Consensus       184 ~~~~~~i~~~~~-----~~~~~~i~v~NK~Dl~~~~  214 (315)
T 1jwy_B          184 NSDALQLAKEVD-----PEGKRTIGVITKLDLMDKG  214 (315)
T ss_dssp             TCSHHHHHHHHC-----SSCSSEEEEEECTTSSCSS
T ss_pred             hhHHHHHHHHhC-----CCCCcEEEEEcCcccCCcc
Confidence            333 24444442     2346799999999977553

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=99.63  E-value=8.4e-16  Score=112.66  Aligned_cols=115  Identities=21%  Similarity=0.215  Sum_probs=73.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEE
Q 036363           19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAA   94 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~   94 (240)
                      ..+|+++|++|+|||||+|++++...........+   ........+ ++  ..+.+|||||...+......  ..+|++
T Consensus         4 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~---~~~~~~~~~-~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~   79 (168)
T 1u8z_A            4 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA---DSYRKKVVL-DGEEVQIDILDTAGQEDYAAIRDNYFRSGEGF   79 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCC---EEEEEEEEE-TTEEEEEEEEECCC---CHHHHHHHHHHCSEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcc---eEEEEEEEE-CCEEEEEEEEECCCcchhHHHHHHHhhcCCEE
Confidence            38999999999999999999998764322221111   111122333 44  36889999998765433222  788999


Q ss_pred             EEEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           95 LVVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        95 l~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      ++|+++++..+... ..++..+...... ...|+++|+||+|...
T Consensus        80 i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~  123 (168)
T 1u8z_A           80 LCVFSITEMESFAATADFREQILRVKED-ENVPFLLVGNKSDLED  123 (168)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHHCC-TTSCEEEEEECGGGGG
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEECccccc
Confidence            99999986544443 3444555554432 2367999999999654

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=99.63  E-value=1e-15  Score=113.40  Aligned_cols=117  Identities=17%  Similarity=0.089  Sum_probs=76.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceE
Q 036363           18 GVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHA   93 (240)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~   93 (240)
                      ...+|+++|++|+|||||+|++++...........  +.........+ ++  ..+.+|||||...+......  ..+|+
T Consensus         6 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~   82 (177)
T 1wms_A            6 SLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTI--GVEFLNKDLEV-DGHFVTMQIWDTAGQERFRSLRTPFYRGSDC   82 (177)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSCCCC----CC--SEEEEEEEEEE-TTEEEEEEEEECCCCGGGHHHHGGGGTTCSE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCce--eeeEEEEEEEE-CCEEEEEEEEeCCCchhhhhhHHHHHhcCCE
Confidence            34899999999999999999999765432222222  22222233334 44  37889999997665433322  78999


Q ss_pred             EEEEEECCCCCCHHH-HHHHHHHHHHhCC--CcCCeEEEEEeCCCCC
Q 036363           94 ALVVFSVRSRFSQEE-EATLHSLQTLFGK--NCFDYMIVVFSGRDEL  137 (240)
Q Consensus        94 ~l~v~~~~~~~~~~~-~~~l~~l~~~~~~--~~~~~~i~v~~~~D~~  137 (240)
                      +++|++++++.+... ..++..+......  ....|+++|+||+|..
T Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~  129 (177)
T 1wms_A           83 CLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS  129 (177)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc
Confidence            999999986544443 3444555544331  1236799999999965

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.63  E-value=8.2e-16  Score=116.20  Aligned_cols=116  Identities=24%  Similarity=0.191  Sum_probs=75.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEE
Q 036363           19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAA   94 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~   94 (240)
                      ..+|+++|++|+|||||+|+|++...........+.+..   ..... ++  ..+.+|||||...+......  ..+|++
T Consensus         8 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~---~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   83 (199)
T 2gf0_A            8 DYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYR---QVISC-DKSVCTLQITDTTGSHQFPAMQRLSISKGHAF   83 (199)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEE---EEEEE-TTEEEEEEEEECCGGGSCHHHHHHHHHHCSEE
T ss_pred             eeEEEEECCCCCcHHHHHHHHHcCCCCCcccCcccccee---EEEEE-CCEEEEEEEEeCCChHHhHHHHHHhhccCCEE
Confidence            489999999999999999999986543222222221111   11222 33  36789999998765433222  778999


Q ss_pred             EEEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           95 LVVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        95 l~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      ++|++++++.+... ..++..+....+.....|+++|+||+|...
T Consensus        84 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~  128 (199)
T 2gf0_A           84 ILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ  128 (199)
T ss_dssp             EEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc
Confidence            99999985444443 334555555443223467999999999654

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=99.63  E-value=6.5e-16  Score=118.63  Aligned_cols=117  Identities=21%  Similarity=0.215  Sum_probs=78.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceE
Q 036363           18 GVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHA   93 (240)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~   93 (240)
                      ...+|+++|.+|+|||||+|+|++...........+.+...  .......+  ..+.+|||||...+......  ..+|+
T Consensus        10 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   87 (218)
T 4djt_A           10 LTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHP--VTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASG   87 (218)
T ss_dssp             CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEE--EEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSE
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEE--EEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCE
Confidence            45899999999999999999999766432222222222111  11111122  46899999998877655444  88999


Q ss_pred             EEEEEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           94 ALVVFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        94 ~l~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      +++|+|++++.+..+. .++..+....+.  ..|+++|+||+|...
T Consensus        88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~  131 (218)
T 4djt_A           88 AILFFDVTSRITCQNLARWVKEFQAVVGN--EAPIVVCANKIDIKN  131 (218)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHCS--SSCEEEEEECTTCC-
T ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECCCCcc
Confidence            9999999966555543 444555555433  267999999999654

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=99.63  E-value=1.3e-15  Score=115.48  Aligned_cols=142  Identities=16%  Similarity=0.128  Sum_probs=84.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEE
Q 036363           19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAA   94 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~   94 (240)
                      ..+|+++|++|+|||||+|++++...........  +.......... ++  ..+.+|||||...+......  ..+|++
T Consensus        25 ~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~--~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~  101 (200)
T 2o52_A           25 LFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTI--GVEFGSRVVNV-GGKTVKLQIWDTAGQERFRSVTRSYYRGAAGA  101 (200)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHC--------------CCEEEEEEEE-TTEEEEEEEECCTTHHHHSCCCHHHHTTCSEE
T ss_pred             ceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcc--cceeEEEEEEE-CCeeeEEEEEcCCCcHhHHHHHHHHhccCCEE
Confidence            4899999999999999999999876533322222  22222233333 44  47899999998766554443  889999


Q ss_pred             EEEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCCcccHHHHhcccCCchHHHHHHHhCCcEEEEeCC
Q 036363           95 LVVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELEANDETLEDYLGRECPKPLKEILHLFDNRCVLFDNK  173 (240)
Q Consensus        95 l~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (240)
                      ++|+|++++.+... ..++..+.....  ...|+++|+||+|..........         ....+....+..++..+..
T Consensus       102 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~v~~~---------~~~~~~~~~~~~~~~~SA~  170 (200)
T 2o52_A          102 LLVYDITSRETYNSLAAWLTDARTLAS--PNIVVILCGNKKDLDPEREVTFL---------EASRFAQENELMFLETSAL  170 (200)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHTC--TTCEEEEEEECGGGGGGCCSCHH---------HHHHHHHHTTCEEEEECTT
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECCCcccccccCHH---------HHHHHHHHcCCEEEEEeCC
Confidence            99999986544443 334444444322  23689999999996433211111         1233444455566666654


Q ss_pred             C
Q 036363          174 T  174 (240)
Q Consensus       174 ~  174 (240)
                      .
T Consensus       171 ~  171 (200)
T 2o52_A          171 T  171 (200)
T ss_dssp             T
T ss_pred             C
Confidence            3

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.63  E-value=3.7e-15  Score=109.53  Aligned_cols=108  Identities=18%  Similarity=0.249  Sum_probs=72.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC----------C
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF----------D   89 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~----------~   89 (240)
                      .+|+++|++|+|||||+|+|++.....+..  .+.|.........+ ++..+.+|||||+..+......          .
T Consensus         4 ~~v~lvG~~gvGKStL~~~l~~~~~~~~~~--~~~t~~~~~~~~~~-~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~   80 (165)
T 2wji_A            4 YEIALIGNPNVGKSTIFNALTGENVYIGNW--PGVTVEKKEGEFEY-NGEKFKVVDLPGVYSLTANSIDEIIARDYIINE   80 (165)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHCCSSSCC-------CCCCCEEEEEE-TTEEEEEEECCCCSCSSSSSHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCeeccCC--CCcceeeeEEEEEE-CCcEEEEEECCCcccCCCcchhHHHHHHHHhcC
Confidence            789999999999999999999976433222  23333333334445 6788999999999887543211          3


Q ss_pred             CceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363           90 EIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDEL  137 (240)
Q Consensus        90 ~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~  137 (240)
                      .+|++++|+|+++.  .....++..+.+   .  ..|+++|+||+|..
T Consensus        81 ~~~~~i~v~D~~~~--~~~~~~~~~~~~---~--~~p~ilv~nK~Dl~  121 (165)
T 2wji_A           81 KPDLVVNIVDATAL--ERNLYLTLQLME---M--GANLLLALNKMDLA  121 (165)
T ss_dssp             CCSEEEEEEETTCH--HHHHHHHHHHHH---T--TCCEEEEEECHHHH
T ss_pred             CCCEEEEEecCCch--hHhHHHHHHHHh---c--CCCEEEEEEchHhc
Confidence            78999999999841  122233333332   1  36799999999943

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=99.63  E-value=1.1e-15  Score=115.25  Aligned_cols=114  Identities=14%  Similarity=0.117  Sum_probs=77.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCc--EEEEEeCCCCCCCCCCCcC--CCceE
Q 036363           18 GVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQ--VVNVIDTPGLFDFSAGSEF--DEIHA   93 (240)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~--~~~~~   93 (240)
                      ...+|+++|++|+|||||+|++++...........+.+.   ...... ++.  .+.+|||||...+......  ..+|+
T Consensus        22 ~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~---~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   97 (194)
T 3reg_A           22 KALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENF---SHVMKY-KNEEFILHLWDTAGQEEYDRLRPLSYADSDV   97 (194)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE---EEEEEE-TTEEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred             eeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeee---EEEEEE-CCEEEEEEEEECCCcHHHHHHhHhhccCCcE
Confidence            347999999999999999999998764322222111111   112223 443  4589999998877665554  88999


Q ss_pred             EEEEEECCCCCCHHH--HHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           94 ALVVFSVRSRFSQEE--EATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        94 ~l~v~~~~~~~~~~~--~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      +++|+|++++.+..+  ..++..+.....   ..|+++|+||+|...
T Consensus        98 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~  141 (194)
T 3reg_A           98 VLLCFAVNNRTSFDNISTKWEPEIKHYID---TAKTVLVGLKVDLRK  141 (194)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHCT---TSEEEEEEECGGGCC
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEChhhcc
Confidence            999999996655554  234444443322   368999999999654

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.63  E-value=1e-15  Score=129.48  Aligned_cols=116  Identities=18%  Similarity=0.215  Sum_probs=82.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC---------
Q 036363           18 GVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF---------   88 (240)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~---------   88 (240)
                      ...+|+++|.+|+|||||+|+|+|......+. ..++|.........+ ++..+.+|||||+.+.......         
T Consensus       174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~-~~gtT~d~~~~~~~~-~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~  251 (436)
T 2hjg_A          174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSN-VAGTTRDAVDTSFTY-NQQEFVIVDTAGMRKKGKVYETTEKYSVLRA  251 (436)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC----------CCEEEEE-TTEEEEETTHHHHTCBTTBCCCCSHHHHHHH
T ss_pred             cCcEEEEEcCCCCCHHHHHHHHhCCCceeecC-CCCceeeeeEEEEEE-CCeEEEEEECCCcCcCccccchHHHHHHHHH
Confidence            34899999999999999999999986532222 234455444445556 7788999999998765432111         


Q ss_pred             ----CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCC
Q 036363           89 ----DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEAN  140 (240)
Q Consensus        89 ----~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~  140 (240)
                          ..+|++++|+|++++.+.++..++..+..     ...++++|+||+|.....
T Consensus       252 ~~~~~~ad~~llv~D~~~~~s~~~~~~~~~~~~-----~~~~iiiv~NK~Dl~~~~  302 (436)
T 2hjg_A          252 LKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHE-----AGKAVVIVVNKWDAVDKD  302 (436)
T ss_dssp             HHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHH-----TTCEEEEEEECGGGSCCC
T ss_pred             HHHHHhCCEEEEEEcCCcCCcHHHHHHHHHHHH-----cCCcEEEEEECccCCCcc
Confidence                67899999999998999988877666643     236899999999976543

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=99.62  E-value=1.3e-15  Score=113.05  Aligned_cols=145  Identities=13%  Similarity=0.049  Sum_probs=89.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC---cEEEEEeCCCCCCCCCCCcC--CCce
Q 036363           18 GVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG---QVVNVIDTPGLFDFSAGSEF--DEIH   92 (240)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~---~~~~l~DtpG~~~~~~~~~~--~~~~   92 (240)
                      ...+|+++|++|+|||||++++++...........+  .........+ .+   ..+.+|||||...+......  ..+|
T Consensus         5 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~--~~~~~~~~~~-~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d   81 (178)
T 2hxs_A            5 RQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIG--LDFFLRRITL-PGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQ   81 (178)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTT--SSEEEEEEEE-TTTEEEEEEEEECTTCCTTCTTHHHHHTTCS
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCcee--EEEEEEEEEe-CCCCEEEEEEEECCCCccccchhhHHHhhCC
Confidence            348999999999999999999998754322222222  2222333444 43   57899999998877655444  8899


Q ss_pred             EEEEEEECCCCCCHHHH-HHHHHHHHHhCC-CcCCeEEEEEeCCCCCCCCcccHHHHhcccCCchHHHHHHHhCCcEEEE
Q 036363           93 AALVVFSVRSRFSQEEE-ATLHSLQTLFGK-NCFDYMIVVFSGRDELEANDETLEDYLGRECPKPLKEILHLFDNRCVLF  170 (240)
Q Consensus        93 ~~l~v~~~~~~~~~~~~-~~l~~l~~~~~~-~~~~~~i~v~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (240)
                      ++++|+|++++.+..+. .++..+...... ...+++++|+||+|.........         .....+....+..++..
T Consensus        82 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~---------~~~~~~~~~~~~~~~~~  152 (178)
T 2hxs_A           82 GVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKP---------EKHLRFCQENGFSSHFV  152 (178)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCH---------HHHHHHHHHHTCEEEEE
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCH---------HHHHHHHHHcCCcEEEE
Confidence            99999999865554432 344444433211 12355899999999643221111         12234444455566666


Q ss_pred             eCCC
Q 036363          171 DNKT  174 (240)
Q Consensus       171 ~~~~  174 (240)
                      +...
T Consensus       153 Sa~~  156 (178)
T 2hxs_A          153 SAKT  156 (178)
T ss_dssp             CTTT
T ss_pred             eCCC
Confidence            6553

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=99.62  E-value=1.9e-15  Score=116.63  Aligned_cols=116  Identities=20%  Similarity=0.162  Sum_probs=76.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceE
Q 036363           18 GVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHA   93 (240)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~   93 (240)
                      ...+|+|+|++|+|||||+++|++...........+.  ........+ ++  ..+.+|||||...+......  ..+|+
T Consensus        12 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~--~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   88 (223)
T 3cpj_B           12 LLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGV--EFATRTLEI-EGKRIKAQIWDTAGQERYRAITSAYYRGAVG   88 (223)
T ss_dssp             EEEEEEEESCTTSSHHHHHHHHHHCCCCC------CC--SEEEEEEEE-TTEEEEEEEECCTTTTTTTCCCGGGTTTCCE
T ss_pred             eeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccc--eeEEEEEEE-CCEEEEEEEEECCCccchhhhHHHHhccCCE
Confidence            3489999999999999999999987653332222222  222233334 44  47899999999887665554  88999


Q ss_pred             EEEEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           94 ALVVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        94 ~l~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      +++|+|++++.+..+ ..++..+.....  ...|+++|+||+|...
T Consensus        89 vilV~D~~~~~s~~~~~~~l~~i~~~~~--~~~piilv~nK~Dl~~  132 (223)
T 3cpj_B           89 ALIVYDISKSSSYENCNHWLSELRENAD--DNVAVGLIGNKSDLAH  132 (223)
T ss_dssp             EEEEEC-CCHHHHHHHHHHHHHHHHHCC----CEEEEEECCGGGGG
T ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEECccccc
Confidence            999999986555544 234444544322  2368999999999654

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=99.62  E-value=2e-15  Score=114.58  Aligned_cols=115  Identities=17%  Similarity=0.107  Sum_probs=77.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceE
Q 036363           18 GVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHA   93 (240)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~   93 (240)
                      ...+|+++|.+|+|||||++++++...........+....   ....+ ++  ..+.+|||||...+......  ..+|+
T Consensus        24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~---~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~   99 (201)
T 2gco_A           24 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYI---ADIEV-DGKQVELALWDTAGQEDYDRLRPLSYPDTDV   99 (201)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCE---EEEEE-TTEEEEEEEECCCCSGGGTTTGGGGCTTCSE
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEE---EEEEE-CCEEEEEEEEECCCchhHHHHHHHhcCCCCE
Confidence            3479999999999999999999987653332222222221   12233 44  36789999998877655544  88999


Q ss_pred             EEEEEECCCCCCHHHH--HHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363           94 ALVVFSVRSRFSQEEE--ATLHSLQTLFGKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        94 ~l~v~~~~~~~~~~~~--~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~  139 (240)
                      +++|+|++++.+....  .++..+.....   ..|+++|+||+|....
T Consensus       100 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~  144 (201)
T 2gco_A          100 ILMCFSIDSPDSLENIPEKWTPEVKHFCP---NVPIILVGNKKDLRQD  144 (201)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHST---TCCEEEEEECGGGTTC
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEecHHhhcC
Confidence            9999999865444443  34444444322   3679999999996654

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=99.62  E-value=4.5e-15  Score=110.78  Aligned_cols=142  Identities=19%  Similarity=0.191  Sum_probs=87.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceE
Q 036363           18 GVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHA   93 (240)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~   93 (240)
                      ...+|+++|++|+|||||+|+|++..........   +.........+ .+  ..+.+|||||...+......  ..+|+
T Consensus        17 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t---~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   92 (187)
T 2a9k_A           17 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPT---KADSYRKKVVL-DGEEVQIDILDTAGQEDYAAIRDNYFRSGEG   92 (187)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTT---CCEEEEEEEEE-TTEEEEEEEEECCCTTCCHHHHHHHHHHCSE
T ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCc---cceEEEEEEEE-CCEEEEEEEEECCCCcccHHHHHHHhccCCE
Confidence            3489999999999999999999987643222211   11111222333 44  36789999998765433322  78899


Q ss_pred             EEEEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCCcccHHHHhcccCCchHHHHHHHhCCcEEEEeC
Q 036363           94 ALVVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELEANDETLEDYLGRECPKPLKEILHLFDNRCVLFDN  172 (240)
Q Consensus        94 ~l~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (240)
                      +++|+++++..+... ..++..+...... ...|+++|+||+|.........         ..+..+....+..++..+.
T Consensus        93 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~~~~---------~~~~~~~~~~~~~~~~~Sa  162 (187)
T 2a9k_A           93 FLCVFSITEMESFAATADFREQILRVKED-ENVPFLLVGNKSDLEDKRQVSV---------EEAKNRAEQWNVNYVETSA  162 (187)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHHCC-TTCCEEEEEECGGGGGGCCSCH---------HHHHHHHHHTTCEEEECCT
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccccccCccCH---------HHHHHHHHHcCCeEEEeCC
Confidence            999999985544433 3444555555432 2367999999999654321111         1234445555555555554


Q ss_pred             C
Q 036363          173 K  173 (240)
Q Consensus       173 ~  173 (240)
                      .
T Consensus       163 ~  163 (187)
T 2a9k_A          163 K  163 (187)
T ss_dssp             T
T ss_pred             C
Confidence            4

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.62  E-value=1e-15  Score=112.03  Aligned_cols=113  Identities=13%  Similarity=0.067  Sum_probs=75.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEEEEE
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAALVV   97 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~v   97 (240)
                      .+|+++|++|+|||||++++++..... ..+    |.......... .+..+.+|||||+..+......  ..+|++++|
T Consensus         1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~----t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v   74 (164)
T 1r8s_A            1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIP----TIGFNVETVEY-KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV   74 (164)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSC-CCC----CSSCCEEEEEC-SSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCcCc-ccC----cCceeEEEEEE-CCEEEEEEEcCCChhhHHHHHHHhccCCEEEEE
Confidence            379999999999999999998765432 211    22222334444 6788999999999765433222  889999999


Q ss_pred             EECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363           98 FSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        98 ~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~  139 (240)
                      +|++++.+.... ..+..+.... .....|+++|+||+|....
T Consensus        75 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~  116 (164)
T 1r8s_A           75 VDSNDRERVNEAREELMRMLAED-ELRDAVLLVFANKQDLPNA  116 (164)
T ss_dssp             EETTCGGGHHHHHHHHHHHHTCG-GGTTCEEEEEEECTTSTTC
T ss_pred             EECCCHHHHHHHHHHHHHHHhch-hhcCCeEEEEEECcCCcCC
Confidence            999866554432 2333332211 1123689999999996543

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=99.62  E-value=2.5e-15  Score=115.20  Aligned_cols=114  Identities=12%  Similarity=0.054  Sum_probs=78.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEe-CCcEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363           19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLK-DGQVVNVIDTPGLFDFSAGSEF--DEIHAAL   95 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l   95 (240)
                      ..+|+++|.+|+|||||++++++...........+.+.   ....... ....+.+|||||...+......  ..+|+++
T Consensus        27 ~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~---~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i  103 (214)
T 3q3j_B           27 RCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY---TACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVL  103 (214)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE---EEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred             eEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE---EEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEEE
Confidence            48999999999999999999998764332222222111   1112221 2346889999999877665554  8899999


Q ss_pred             EEEECCCCCCHHH--HHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           96 VVFSVRSRFSQEE--EATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        96 ~v~~~~~~~~~~~--~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      +|+|++++.+...  ..++..+.....   ..|+++|+||+|...
T Consensus       104 ~v~d~~~~~s~~~~~~~~~~~i~~~~~---~~piilv~nK~Dl~~  145 (214)
T 3q3j_B          104 LCFDISRPETVDSALKKWRTEILDYCP---STRVLLIGCKTDLRT  145 (214)
T ss_dssp             EEEETTCTHHHHHHHTHHHHHHHHHCT---TSEEEEEEECGGGGG
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEChhhcc
Confidence            9999997666655  345555555432   368999999999543

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=99.62  E-value=4.7e-16  Score=119.79  Aligned_cols=118  Identities=21%  Similarity=0.151  Sum_probs=77.8

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEE
Q 036363           17 NGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAA   94 (240)
Q Consensus        17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~   94 (240)
                      ....+|+++|.+|+|||||+|+++............+.+.......... ....+.+|||||...+......  ..+|++
T Consensus        13 ~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   91 (221)
T 3gj0_A           13 QVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNR-GPIKFNVWDTAGQEKFGGLRDGYYIQAQCA   91 (221)
T ss_dssp             CCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETT-EEEEEEEEEECSGGGTSCCCHHHHTTCCEE
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECC-EEEEEEEEeCCChHHHhHHHHHHHhcCCEE
Confidence            3458999999999999999999554332222222233333332222211 2346889999998877655544  889999


Q ss_pred             EEEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           95 LVVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        95 l~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      ++|+|++++.+... ..++..+...+.   ..|+++|+||+|...
T Consensus        92 i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~  133 (221)
T 3gj0_A           92 IIMFDVTSRVTYKNVPNWHRDLVRVCE---NIPIVLCGNKVDIKD  133 (221)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHST---TCCEEEEEECTTSSS
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhCC---CCCEEEEEECCcccc
Confidence            99999996555444 344455554432   367999999999654

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=99.62  E-value=1.6e-15  Score=113.42  Aligned_cols=114  Identities=15%  Similarity=0.074  Sum_probs=76.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceE
Q 036363           18 GVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHA   93 (240)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~   93 (240)
                      ...+|+++|++|+|||||++++++...........+...   ...... ++  ..+.+|||||...+......  ..+|+
T Consensus         6 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~---~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~   81 (184)
T 1m7b_A            6 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY---TASFEI-DTQRIELSLWDTSGSPYYDNVRPLSYPDSDA   81 (184)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE---EEEEEC-SSCEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred             eEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE---EEEEEE-CCEEEEEEEEECCCChhhhhhHHhhcCCCcE
Confidence            348999999999999999999998654322222111111   112223 32  46789999998877655444  88999


Q ss_pred             EEEEEECCCCCCHHHH--HHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           94 ALVVFSVRSRFSQEEE--ATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        94 ~l~v~~~~~~~~~~~~--~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      +++|+|++++.+....  .++..+.....   ..|+++|+||+|...
T Consensus        82 ~i~v~d~~~~~s~~~~~~~~~~~i~~~~~---~~piilv~nK~Dl~~  125 (184)
T 1m7b_A           82 VLICFDISRPETLDSVLKKWKGEIQEFCP---NTKMLLVGCKSDLRT  125 (184)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHCT---TCEEEEEEECGGGGG
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHHCC---CCCEEEEEEcchhhc
Confidence            9999999865555443  33444544332   368999999999543

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=99.61  E-value=3.3e-16  Score=118.07  Aligned_cols=117  Identities=14%  Similarity=0.157  Sum_probs=74.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCce
Q 036363           17 NGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIH   92 (240)
Q Consensus        17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~   92 (240)
                      ....+|+++|++|+|||||+|+|++.........  ..+.........+ ++  ..+.+|||||...+......  ..+|
T Consensus        24 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~--t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d  100 (192)
T 2il1_A           24 DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKS--TVGVDFKIKTVEL-RGKKIRLQIWDTAGQERFNSITSAYYRSAK  100 (192)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHCC--------C--CTTEEEEEEEEEE-TTEEEEEEEEEECCSGGGHHHHHHHHHHCS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCC--ccceeEEEEEEEE-CCeEEEEEEEeCCCcHHHHHHHHHHhcCCC
Confidence            3457899999999999999999998765333222  2223333333444 44  36889999997655332222  7889


Q ss_pred             EEEEEEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           93 AALVVFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        93 ~~l~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      ++++|+|+++..+..+. .++..+.....  ...|+++|+||+|...
T Consensus       101 ~iilV~D~~~~~s~~~~~~~~~~i~~~~~--~~~piilV~NK~Dl~~  145 (192)
T 2il1_A          101 GIILVYDITKKETFDDLPKWMKMIDKYAS--EDAELLLVGNKLDCET  145 (192)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECGGGGG
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECccccc
Confidence            99999999865555543 33334443322  2368999999999643

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=99.61  E-value=2.8e-15  Score=114.95  Aligned_cols=115  Identities=21%  Similarity=0.149  Sum_probs=65.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCc--EEEEEeCCCCCCCCCCCcC--CCceE
Q 036363           18 GVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQ--VVNVIDTPGLFDFSAGSEF--DEIHA   93 (240)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~--~~~~~   93 (240)
                      ...+|+++|++|+|||||++++++..........   +.......... ++.  .+.+|||||...+......  ..+|+
T Consensus        33 ~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t---~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~  108 (214)
T 2j1l_A           33 RSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPT---VFERYMVNLQV-KGKPVHLHIWDTAGQDDYDRLRPLFYPDASV  108 (214)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHC-------CCC---CCEEEEEEEEE-TTEEEEEEEEEC---------------CEEE
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCc---cceeEEEEEEE-CCEEEEEEEEECCCchhhhHHHHHHhccCCE
Confidence            3479999999999999999999987643222211   11111122333 443  6789999998877655544  88999


Q ss_pred             EEEEEECCCCCCHHHH--HHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363           94 ALVVFSVRSRFSQEEE--ATLHSLQTLFGKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        94 ~l~v~~~~~~~~~~~~--~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~  139 (240)
                      +++|+|++++.+....  .++..+.....   ..|+++|+||+|....
T Consensus       109 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~  153 (214)
T 2j1l_A          109 LLLCFDVTSPNSFDNIFNRWYPEVNHFCK---KVPIIVVGCKTDLRKD  153 (214)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHCS---SCCEEEEEECGGGGSC
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEChhhhcc
Confidence            9999999865554443  34444544322   3679999999996543

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=99.61  E-value=1.9e-15  Score=112.79  Aligned_cols=114  Identities=18%  Similarity=0.113  Sum_probs=77.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCc--EEEEEeCCCCCCCCCCCcC--CCceEE
Q 036363           19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQ--VVNVIDTPGLFDFSAGSEF--DEIHAA   94 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~--~~~~~~   94 (240)
                      ..+|+++|++|+|||||++++++...........+...   ...... ++.  .+.+|||||+..+......  ..+|++
T Consensus         5 ~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~---~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~   80 (186)
T 1mh1_A            5 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY---SANVMV-DGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVS   80 (186)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE---EEEEEE-TTEEEEEEEECCCCSGGGTTTGGGGCTTCSEE
T ss_pred             EEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee---EEEEEE-CCEEEEEEEEECCCCHhHHHHHHHhccCCcEE
Confidence            37999999999999999999997654322222221111   122233 443  5669999999877655544  889999


Q ss_pred             EEEEECCCCCCHHHH--HHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363           95 LVVFSVRSRFSQEEE--ATLHSLQTLFGKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        95 l~v~~~~~~~~~~~~--~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~  139 (240)
                      ++|+|++++.+..+.  .++..+....+   ..|+++|+||+|....
T Consensus        81 i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~  124 (186)
T 1mh1_A           81 LICFSLVSPASFENVRAKWYPEVRHHCP---NTPIILVGTKLDLRDD  124 (186)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHST---TSCEEEEEECHHHHTC
T ss_pred             EEEEECCChhhHHHHHHHHHHHHHHhCC---CCCEEEEeEccccccc
Confidence            999999865555543  34555554433   3679999999996543

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=99.61  E-value=4.6e-16  Score=117.89  Aligned_cols=115  Identities=17%  Similarity=0.164  Sum_probs=71.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceE
Q 036363           18 GVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHA   93 (240)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~   93 (240)
                      ...+|+++|++|+|||||+|++++...........+.+...  ....+ ++  ..+.+|||||...+......  ..+|+
T Consensus        27 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~  103 (199)
T 2p5s_A           27 KAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQM--KTLIV-DGERTVLQLWDTAGQERFRSIAKSYFRKADG  103 (199)
T ss_dssp             -CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEE--EEEEE-TTEEEEEEEEECTTCTTCHHHHHHHHHHCSE
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEE--EEEEE-CCEEEEEEEEECCCCcchhhhHHHHHhhCCE
Confidence            44899999999999999999999876432222222222222  22333 33  46889999998765433222  77899


Q ss_pred             EEEEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363           94 ALVVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDEL  137 (240)
Q Consensus        94 ~l~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~  137 (240)
                      +++|+|++++.+... ..++..+.....  ...|+++|+||+|..
T Consensus       104 iilv~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~NK~Dl~  146 (199)
T 2p5s_A          104 VLLLYDVTCEKSFLNIREWVDMIEDAAH--ETVPIMLVGNKADIR  146 (199)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHC-----CCEEEEEECGGGH
T ss_pred             EEEEEECCChHHHHHHHHHHHHHHHhcC--CCCCEEEEEECcccc
Confidence            999999986555444 334444443322  236799999999954

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=99.61  E-value=2e-15  Score=115.05  Aligned_cols=120  Identities=15%  Similarity=0.088  Sum_probs=76.9

Q ss_pred             ccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC-
Q 036363           12 LTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF-   88 (240)
Q Consensus        12 ~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~-   88 (240)
                      +........+|+++|++|+|||||++.+++...........+...   .....+ ++  ..+.+|||||...+...... 
T Consensus        21 m~~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~---~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~   96 (205)
T 1gwn_A           21 MDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY---TASFEI-DTQRIELSLWDTSGSPYYDNVRPLS   96 (205)
T ss_dssp             ------CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE---EEEEES-SSSEEEEEEEEECCSGGGTTTGGGG
T ss_pred             CCcccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE---EEEEEE-CCEEEEEEEEeCCCcHhhhHHHHhh
Confidence            333334558999999999999999999998764322121111111   112223 32  46889999998877655444 


Q ss_pred             -CCceEEEEEEECCCCCCHHHH--HHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           89 -DEIHAALVVFSVRSRFSQEEE--ATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        89 -~~~~~~l~v~~~~~~~~~~~~--~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                       ..+|++++|+|++++.+....  .++..+.....   ..|+++|+||+|...
T Consensus        97 ~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~---~~piilv~nK~Dl~~  146 (205)
T 1gwn_A           97 YPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP---NTKMLLVGCKSDLRT  146 (205)
T ss_dssp             CTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TCEEEEEEECGGGGG
T ss_pred             ccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCC---CCCEEEEEechhhcc
Confidence             889999999999865554443  34445544332   368999999999543

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.60  E-value=5.2e-15  Score=125.87  Aligned_cols=116  Identities=18%  Similarity=0.215  Sum_probs=83.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC---------
Q 036363           18 GVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF---------   88 (240)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~---------   88 (240)
                      ...+|+++|.+|+|||||+|+|++......+.. .++|.......+.+ ++..+.+|||||+.........         
T Consensus       194 ~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~-~gtt~~~~~~~~~~-~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~  271 (456)
T 4dcu_A          194 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNV-AGTTRDAVDTSFTY-NQQEFVIVDTAGMRKKGKVYETTEKYSVLRA  271 (456)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHTSTTEEECC-------CTTSEEEEE-TTEEEEETTGGGTTTBTTBCCCCSHHHHHHH
T ss_pred             ccceeEEecCCCCCHHHHHHHHhCCCccccCCC-CCeEEEEEEEEEEE-CCceEEEEECCCCCcCcccchHHHHHHHHHH
Confidence            458999999999999999999998764332222 34444443344555 7789999999998654322111         


Q ss_pred             ----CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCC
Q 036363           89 ----DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEAN  140 (240)
Q Consensus        89 ----~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~  140 (240)
                          ..+|++++|+|++.+++..+..++..+.+     ...|+++|+||+|.....
T Consensus       272 ~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~-----~~~~~ilv~NK~Dl~~~~  322 (456)
T 4dcu_A          272 LKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHE-----AGKAVVIVVNKWDAVDKD  322 (456)
T ss_dssp             HHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHH-----TTCEEEEEEECGGGSCCC
T ss_pred             HHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHH-----cCCCEEEEEEChhcCCCc
Confidence                67899999999998899888888777764     126899999999976544

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.60  E-value=3.1e-15  Score=111.69  Aligned_cols=115  Identities=17%  Similarity=0.110  Sum_probs=77.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363           18 GVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAAL   95 (240)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l   95 (240)
                      ...+|+++|++|+|||||++++++...... .    .|.........+ ++..+.+|||||...+......  ..+|+++
T Consensus        15 ~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~-~----~t~g~~~~~~~~-~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i   88 (181)
T 1fzq_A           15 QEVRILLLGLDNAGKTTLLKQLASEDISHI-T----PTQGFNIKSVQS-QGFKLNVWDIGGQRKIRPYWRSYFENTDILI   88 (181)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHCCSCCEEE-E----EETTEEEEEEEE-TTEEEEEEECSSCGGGHHHHHHHHTTCSEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCCCcc-c----CcCCeEEEEEEE-CCEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence            348999999999999999999998753211 1    122223334455 6788999999998765433222  7899999


Q ss_pred             EEEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363           96 VVFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        96 ~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~  139 (240)
                      +|+|++++.+.... ..+..+..... ....|+++|+||+|....
T Consensus        89 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~~  132 (181)
T 1fzq_A           89 YVIDSADRKRFEETGQELTELLEEEK-LSCVPVLIFANKQDLLTA  132 (181)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHTTCGG-GTTCCEEEEEECTTSTTC
T ss_pred             EEEECcCHHHHHHHHHHHHHHHhChh-hcCCCEEEEEECcCcccC
Confidence            99999866555542 23333322111 123679999999996544

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=99.60  E-value=4.1e-15  Score=113.69  Aligned_cols=113  Identities=18%  Similarity=0.102  Sum_probs=76.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEE
Q 036363           19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAA   94 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~   94 (240)
                      ..+|+++|++|+|||||++.+++...........+...   ...... ++  ..+.+|||||+..+......  ..+|++
T Consensus         9 ~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~---~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~   84 (212)
T 2j0v_A            9 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF---SANVAV-DGQIVNLGLWDTAGQEDYSRLRPLSYRGADIF   84 (212)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE---EEEEEC-SSCEEEEEEECCCCCCCCCC--CGGGTTCSEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE---EEEEEE-CCEEEEEEEEECCCcHHHHHHHHhhccCCCEE
Confidence            48999999999999999999997654322222222111   122233 33  47889999999887766554  889999


Q ss_pred             EEEEECCCCCCHHHH--HHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           95 LVVFSVRSRFSQEEE--ATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        95 l~v~~~~~~~~~~~~--~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      ++|+|++++.+....  .++..+....+   ..|+++|+||+|...
T Consensus        85 ilv~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~  127 (212)
T 2j0v_A           85 VLAFSLISKASYENVLKKWMPELRRFAP---NVPIVLVGTKLDLRD  127 (212)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHCT---TCCEEEEEECHHHHT
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEeCHHhhh
Confidence            999999865555443  34455544432   367999999999544

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=99.60  E-value=1.5e-15  Score=113.04  Aligned_cols=114  Identities=17%  Similarity=0.071  Sum_probs=70.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEE-eCCcEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363           19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVL-KDGQVVNVIDTPGLFDFSAGSEF--DEIHAAL   95 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l   95 (240)
                      ..+|+++|++|+|||||++++++...........+.....   .... .....+.+|||||...+......  ..+|+++
T Consensus         8 ~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   84 (182)
T 3bwd_D            8 FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSA---NVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFI   84 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHSCCC----------CBC---CCC-------CEEECCCC-CTTTTTGGGGGTTCSEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEE---EEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEE
Confidence            3899999999999999999999765322211111111110   0111 02335679999999887665554  8899999


Q ss_pred             EEEECCCCCCHHHH--HHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           96 VVFSVRSRFSQEEE--ATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        96 ~v~~~~~~~~~~~~--~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      +|+|++++.+....  .++..+.....   ..|+++|+||+|...
T Consensus        85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~  126 (182)
T 3bwd_D           85 LAFSLISKASYENVSKKWIPELKHYAP---GVPIVLVGTKLDLRD  126 (182)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHCT---TCCEEEEEECHHHHT
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEechhhhc
Confidence            99999865555543  34455554432   367999999999544

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.60  E-value=1.3e-15  Score=115.75  Aligned_cols=115  Identities=15%  Similarity=0.159  Sum_probs=76.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEE
Q 036363           19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAA   94 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~   94 (240)
                      ..+|+++|++|+|||||++++++.........  ..+.........+ ++  ..+.+|||||...+......  ..+|++
T Consensus        26 ~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~--t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~  102 (201)
T 2ew1_A           26 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGA--TIGVDFMIKTVEI-NGEKVKLQIWDTAGQERFRSITQSYYRSANAL  102 (201)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCC--CCSEEEEEEEEEE-TTEEEEEEEEEECCSGGGHHHHGGGSTTCSEE
T ss_pred             ceEEEEECcCCCCHHHHHHHHHhCCCCCCCCC--ccceeEEEEEEEE-CCEEEEEEEEECCCcHHHHHHHHHHHhcCCEE
Confidence            47999999999999999999997654322221  2222222233444 44  36889999998665432222  889999


Q ss_pred             EEEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           95 LVVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        95 l~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      ++|+|++++.+... ..++..+.....  ...|+++|+||+|...
T Consensus       103 i~v~D~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~NK~Dl~~  145 (201)
T 2ew1_A          103 ILTYDITCEESFRCLPEWLREIEQYAS--NKVITVLVGNKIDLAE  145 (201)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECGGGGG
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECCCCcc
Confidence            99999986544443 344444544322  2367999999999653

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.60  E-value=1.4e-15  Score=128.96  Aligned_cols=111  Identities=21%  Similarity=0.259  Sum_probs=74.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCc----------CC
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSE----------FD   89 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~----------~~   89 (240)
                      .+|+++|++|+|||||+|+|++........ ..++|.........+ ++..+.+|||||+.++.....          ..
T Consensus       225 ~kV~ivG~~nvGKSSLln~L~~~~~a~v~~-~~gtT~d~~~~~i~~-~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~~  302 (462)
T 3geh_A          225 LKVAIVGRPNVGKSSLLNAWSQSDRAIVTD-LPGTTRDVVESQLVV-GGIPVQVLDTAGIRETSDQVEKIGVERSRQAAN  302 (462)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHBSCCSC-CTTCCHHHHHHEEEE-TTEEEEECC--------------------CCCC
T ss_pred             CEEEEEcCCCCCHHHHHHHHhCCCcccccC-CCCeeEEEEEEEEEE-CCEEEEEEECCccccchhHHHHHHHHHHhhhhh
Confidence            789999999999999999999865322221 234454444344555 788999999999976543211          17


Q ss_pred             CceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363           90 EIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        90 ~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~  139 (240)
                      .+|++++|+|++++.+..+..++..+.    .   .|+++|+||+|....
T Consensus       303 ~aD~vl~VvD~s~~~~~~~~~i~~~l~----~---~piivV~NK~Dl~~~  345 (462)
T 3geh_A          303 TADLVLLTIDAATGWTTGDQEIYEQVK----H---RPLILVMNKIDLVEK  345 (462)
T ss_dssp             SCSEEEEEEETTTCSCHHHHHHHHHHT----T---SCEEEEEECTTSSCG
T ss_pred             cCCEEEEEeccCCCCCHHHHHHHHhcc----C---CcEEEEEECCCCCcc
Confidence            899999999999888888766665552    2   579999999996644

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=99.60  E-value=3.5e-16  Score=118.55  Aligned_cols=117  Identities=20%  Similarity=0.176  Sum_probs=76.9

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCce
Q 036363           17 NGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIH   92 (240)
Q Consensus        17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~   92 (240)
                      ....+|+++|++|+|||||+|+|++........  .+.+.........+ ++  ..+.+|||||...+......  ..+|
T Consensus        31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d  107 (199)
T 3l0i_B           31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYI--STIGVDFKIRTIEL-DGKTIKLQIWDTAGQERFRTITSSYYRGAH  107 (199)
T ss_dssp             SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHH--HHHCCSEEEEEEEE-TTEEEEEEEECCTTCTTCCCCSCC--CCCS
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCCCcC--CcccceEEEEEEEE-CCEEEEEEEEECCCcHhHHHHHHHHhhcCC
Confidence            345899999999999999999999876433222  12222333334444 44  46889999998887765555  8899


Q ss_pred             EEEEEEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           93 AALVVFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        93 ~~l~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      ++++|+|++++.+.... .++..+....  ....|+++|+||+|...
T Consensus       108 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~p~ilv~nK~Dl~~  152 (199)
T 3l0i_B          108 GIIVVYDVTDQESFNNVKQWLQEIDRYA--SENVNKLLVGNKCDLTT  152 (199)
T ss_dssp             EEEECC-CCCSHHHHHHHHHHHHHHSCC---CCSEEEEC-CCSSCC-
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhc--cCCCCEEEEEECccCCc
Confidence            99999999865554443 3333332221  12468999999999654

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=99.59  E-value=5e-15  Score=112.66  Aligned_cols=116  Identities=19%  Similarity=0.116  Sum_probs=77.0

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCc--EEEEEeCCCCCCCCCCCcC--CCce
Q 036363           17 NGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQ--VVNVIDTPGLFDFSAGSEF--DEIH   92 (240)
Q Consensus        17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~--~~~~   92 (240)
                      ....+|+++|++|+|||||++++++.........   .+.......... ++.  .+.+|||||...+......  ..+|
T Consensus        28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~---t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d  103 (204)
T 4gzl_A           28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIP---TVFDNYSANVMV-DGKPVNLGLWDTAGLEDYDRLRPLSYPQTD  103 (204)
T ss_dssp             --CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCC---CSEEEEEEEEEC-C-CEEEEEEEEECCSGGGTTTGGGGCTTCS
T ss_pred             CCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCC---eecceeEEEEEE-CCEEEEEEEEECCCchhhHHHHHHHhccCC
Confidence            3458999999999999999999997654322221   122222222233 443  4569999999877665554  8999


Q ss_pred             EEEEEEECCCCCCHHHH--HHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363           93 AALVVFSVRSRFSQEEE--ATLHSLQTLFGKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        93 ~~l~v~~~~~~~~~~~~--~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~  139 (240)
                      ++++|+|++++.+..+.  .++..+....   ...|+++|+||+|....
T Consensus       104 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~  149 (204)
T 4gzl_A          104 VFLICFSLVSPASFENVRAKWYPEVRHHC---PNTPIILVGTKLDLRDD  149 (204)
T ss_dssp             EEEEEEETTCHHHHHHHHHTHHHHHHHHC---SSCCEEEEEECHHHHTC
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEechhhccc
Confidence            99999999966665554  3444454433   23679999999996543

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.59  E-value=1.3e-14  Score=122.95  Aligned_cols=114  Identities=21%  Similarity=0.239  Sum_probs=76.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCC----c---C---
Q 036363           19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGS----E---F---   88 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~----~---~---   88 (240)
                      ..+|+|+|++|+|||||+|+|+|......+. ..++|.........+ ++..+.+|||||+.......    .   .   
T Consensus       180 ~~kvaivG~~gvGKSTLln~l~g~~~~~v~~-~~gtT~d~~~~~i~~-~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~  257 (439)
T 1mky_A          180 AIKVAIVGRPNVGKSTLFNAILNKERALVSP-IPGTTRDPVDDEVFI-DGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRV  257 (439)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHTSTTEEECC-CC------CCEEEEE-TTEEEEESSCSCC-----------CCSCCHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHhCCcccccCC-CCCCcCCceEEEEEE-CCEEEEEEECCCCccccccchhhHHHHHHHHH
Confidence            4799999999999999999999986432222 234454444455566 78889999999985443221    0   0   


Q ss_pred             ----CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363           89 ----DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        89 ----~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~  139 (240)
                          ..+|++++|+|++.+.+..+......+..     ...++++|+||+|....
T Consensus       258 ~~~i~~ad~vllv~d~~~~~~~~~~~i~~~l~~-----~~~~~ilv~NK~Dl~~~  307 (439)
T 1mky_A          258 VDSIEKADVVVIVLDATQGITRQDQRMAGLMER-----RGRASVVVFNKWDLVVH  307 (439)
T ss_dssp             HHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHH-----TTCEEEEEEECGGGSTT
T ss_pred             HHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHH-----cCCCEEEEEECccCCCc
Confidence                56799999999998888777655544432     13679999999997654

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.59  E-value=1.1e-14  Score=109.90  Aligned_cols=115  Identities=22%  Similarity=0.167  Sum_probs=74.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceE
Q 036363           18 GVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHA   93 (240)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~   93 (240)
                      ...+|+++|++|+|||||++++++...........+...   ...... ++  ..+.+|||||... ......  ..+|+
T Consensus        27 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~---~~~~~~-~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~  101 (196)
T 2atv_A           27 AEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY---RHQATI-DDEVVSMEILDTAGQED-TIQREGHMRWGEG  101 (196)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE---EEEEEE-TTEEEEEEEEECCCCCC-CHHHHHHHHHCSE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE---EEEEEE-CCEEEEEEEEECCCCCc-ccchhhhhccCCE
Confidence            458999999999999999999998764332222221111   122333 33  4688999999887 111111  77899


Q ss_pred             EEEEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           94 ALVVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        94 ~l~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      +++|+|++++.+... ..++..+...... ...|+++|+||+|...
T Consensus       102 iilv~D~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~NK~Dl~~  146 (196)
T 2atv_A          102 FVLVYDITDRGSFEEVLPLKNILDEIKKP-KNVTLILVGNKADLDH  146 (196)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHTT-SCCCEEEEEECGGGGG
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhhCC-CCCcEEEEEECccccc
Confidence            999999986544443 3344455544322 2367999999999654

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.59  E-value=6.9e-16  Score=116.11  Aligned_cols=118  Identities=12%  Similarity=0.052  Sum_probs=76.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363           18 GVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAAL   95 (240)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l   95 (240)
                      ...+|+|+|++|+|||||+|++++...........+.+.......... ....+.+|||||...+......  ..+|+++
T Consensus        22 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i  100 (191)
T 3dz8_A           22 YMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHE-KRVKLQIWDTAGQERYRTITTAYYRGAMGFI  100 (191)
T ss_dssp             ECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETT-TTEEEEEECHHHHHHCHHHHHHHHTTCCEEE
T ss_pred             eeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECC-EEEEEEEEeCCChHHHHHHHHHHHccCCEEE
Confidence            347999999999999999999998654332222223233322222211 3457899999997655433222  8899999


Q ss_pred             EEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           96 VVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        96 ~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      +|+|++++.+... ..++..+....  ....|+++|+||+|...
T Consensus       101 ~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~piilv~nK~Dl~~  142 (191)
T 3dz8_A          101 LMYDITNEESFNAVQDWATQIKTYS--WDNAQVILVGNKCDMEE  142 (191)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHS--CTTCEEEEEEECTTCGG
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhc--CCCCCEEEEEECCCCcc
Confidence            9999986544443 33444444432  12468999999999543

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=99.59  E-value=6.2e-15  Score=111.40  Aligned_cols=120  Identities=24%  Similarity=0.203  Sum_probs=75.0

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCc--EEEEEeCCCCCCCCC-CCcC--CC
Q 036363           16 SNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQ--VVNVIDTPGLFDFSA-GSEF--DE   90 (240)
Q Consensus        16 ~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~l~DtpG~~~~~~-~~~~--~~   90 (240)
                      .....+|+++|++|+|||||++++++...........  +.........+ ++.  .+.+|||||...+.. ....  ..
T Consensus        20 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~   96 (195)
T 3cbq_A           20 KDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPEN--PEDTYERRIMV-DKEEVTLVVYDIWEQGDAGGWLRDHCLQT   96 (195)
T ss_dssp             --CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTS--CTTEEEEEEEE-TTEEEEEEEECCCCCSGGGHHHHHHHHHH
T ss_pred             CCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCc--ccceEEEEEEE-CCEEEEEEEEecCCCccchhhhHHHhhcc
Confidence            3456899999999999999999998754322222212  22222223334 443  567899999876532 1111  67


Q ss_pred             ceEEEEEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363           91 IHAALVVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        91 ~~~~l~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~  139 (240)
                      +|++++|+|++++.+... ..++..+..... ....|+++|+||+|....
T Consensus        97 ~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~  145 (195)
T 3cbq_A           97 GDAFLIVFSVTDRRSFSKVPETLLRLRAGRP-HHDLPVILVGNKSDLARS  145 (195)
T ss_dssp             CSEEEEEEETTCHHHHHTHHHHHHHHHHHST-TSCCCEEEEEECTTCTTT
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEeechhcccc
Confidence            899999999986555443 344444444322 123679999999996543

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.59  E-value=1e-14  Score=109.14  Aligned_cols=135  Identities=15%  Similarity=0.222  Sum_probs=86.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC----------
Q 036363           19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF----------   88 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~----------   88 (240)
                      ..+|+++|++|+|||||+|+|++...+....  .+.|.........+ ++..+.+|||||+..+......          
T Consensus         7 ~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~--~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~   83 (188)
T 2wjg_A            7 SYEIALIGNPNVGKSTIFNALTGENVYIGNW--PGVTVEKKEGEFEY-NGEKFKVVDLPGVYSLTANSIDEIIARDYIIN   83 (188)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTTCEEEEEC--TTSCCEEEEEEEEE-TTEEEEEEECCCCSCCSSSSHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCccccCC--CCeeccceEEEEEe-CCcEEEEEECCCcCccccccHHHHHHHHHHhc
Confidence            3799999999999999999999976443332  34444444455556 7788999999999887533211          


Q ss_pred             CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCCcccHHHHhcccCCchHHHHHHHhCCcEE
Q 036363           89 DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEANDETLEDYLGRECPKPLKEILHLFDNRCV  168 (240)
Q Consensus        89 ~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (240)
                      ..+|++++|+|.++ + .....++..+.   .  ...|+++|+||+|.....  .        .......+....+..++
T Consensus        84 ~~~~~~i~v~d~~~-~-~~~~~~~~~~~---~--~~~piilv~nK~Dl~~~~--~--------~~~~~~~~~~~~~~~~~  146 (188)
T 2wjg_A           84 EKPDLVVNIVDATA-L-ERNLYLTLQLM---E--MGANLLLALNKMDLAKSL--G--------IEIDVDKLEKILGVKVV  146 (188)
T ss_dssp             HCCSEEEEEEEGGG-H-HHHHHHHHHHH---T--TTCCEEEEEECHHHHHHT--T--------CCCCHHHHHHHHTSCEE
T ss_pred             cCCCEEEEEecchh-H-HHHHHHHHHHH---h--cCCCEEEEEEhhhccccc--c--------chHHHHHHHHHhCCCeE
Confidence            35899999999873 1 11223333332   2  236799999999943221  0        01234455555566666


Q ss_pred             EEeCC
Q 036363          169 LFDNK  173 (240)
Q Consensus       169 ~~~~~  173 (240)
                      ..+..
T Consensus       147 ~~Sa~  151 (188)
T 2wjg_A          147 PLSAA  151 (188)
T ss_dssp             ECBGG
T ss_pred             EEEec
Confidence            66544

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.58  E-value=4.8e-15  Score=113.45  Aligned_cols=114  Identities=18%  Similarity=0.191  Sum_probs=73.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeC---CcEEEEEeCCCCCCCCC-CCcC--CCce
Q 036363           19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKD---GQVVNVIDTPGLFDFSA-GSEF--DEIH   92 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~l~DtpG~~~~~~-~~~~--~~~~   92 (240)
                      ..+|+++|++|+|||||++++++........     +.........+ +   +..+.+|||||+..+.. ....  ..+|
T Consensus         7 ~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~-----~~~~~~~~~~~-~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~   80 (214)
T 2fh5_B            7 QRAVLFVGLCDSGKTLLFVRLLTGQYRDTQT-----SITDSSAIYKV-NNNRGNSLTLIDLPGHESLRFQLLDRFKSSAR   80 (214)
T ss_dssp             -CEEEEECSTTSSHHHHHHHHHHSCCCCBCC-----CCSCEEEEEEC-SSTTCCEEEEEECCCCHHHHHHHHHHHGGGEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCcccccC-----CcceeeEEEEe-cCCCccEEEEEECCCChhHHHHHHHHHHhhCC
Confidence            4899999999999999999999876432221     11122233444 4   56799999999986653 2222  7899


Q ss_pred             EEEEEEECCCCCCHHHHHHHHHHHHHh----CCCcCCeEEEEEeCCCCCCC
Q 036363           93 AALVVFSVRSRFSQEEEATLHSLQTLF----GKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        93 ~~l~v~~~~~~~~~~~~~~l~~l~~~~----~~~~~~~~i~v~~~~D~~~~  139 (240)
                      ++++|+|+++ ...........+...+    ......|+++|+||+|....
T Consensus        81 ~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~  130 (214)
T 2fh5_B           81 AVVFVVDSAA-FQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMA  130 (214)
T ss_dssp             EEEEEEETTT-HHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTC
T ss_pred             EEEEEEECCC-cCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCc
Confidence            9999999984 2222222333332221    12234689999999996654

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=99.58  E-value=5.6e-15  Score=112.28  Aligned_cols=117  Identities=20%  Similarity=0.119  Sum_probs=53.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCC--CCccccCCCCCcceeEEEEEEEEeC----CcEEEEEeCCCCCCCCCCCcC--CC
Q 036363           19 VRTVVLVGHTGNGKSATGNSILGR--RAFKSRASSSGVTSTCEMHRTVLKD----GQVVNVIDTPGLFDFSAGSEF--DE   90 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g~--~~~~~~~~~~~~t~~~~~~~~~~~~----~~~~~l~DtpG~~~~~~~~~~--~~   90 (240)
                      ..+|+++|++|+|||||+++|++.  ........  ............+ +    ...+.+|||||+..+......  ..
T Consensus        20 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~--t~~~~~~~~~~~~-~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~   96 (208)
T 2yc2_C           20 RCKVAVVGEATVGKSALISMFTSKGSKFLKDYAM--TSGVEVVVAPVTI-PDTTVSVELFLLDTAGSDLYKEQISQYWNG   96 (208)
T ss_dssp             EEEEEEC------------------------------------CEEEEC-TTSSEEEEEEEEETTTTHHHHHHHSTTCCC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCC--ccceEEEEEEEEE-CCcccEEEEEEEECCCcHHHHHHHHHHHhh
Confidence            379999999999999999999987  33211111  1111222233344 4    347899999998755433222  78


Q ss_pred             ceEEEEEEECCCCCCHHH-HHHHHHHHHHhCC-CcCCeEEEEEeCCCCCC
Q 036363           91 IHAALVVFSVRSRFSQEE-EATLHSLQTLFGK-NCFDYMIVVFSGRDELE  138 (240)
Q Consensus        91 ~~~~l~v~~~~~~~~~~~-~~~l~~l~~~~~~-~~~~~~i~v~~~~D~~~  138 (240)
                      +|++++|+|++++.+... ..++..+....+. ....|+++|+||+|...
T Consensus        97 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~  146 (208)
T 2yc2_C           97 VYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPP  146 (208)
T ss_dssp             CCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC----
T ss_pred             CcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccch
Confidence            999999999986555443 3445555544320 12468999999999654

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.58  E-value=4.1e-14  Score=115.35  Aligned_cols=114  Identities=13%  Similarity=0.053  Sum_probs=76.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEEEE
Q 036363           19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAALV   96 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~   96 (240)
                      ..+|+|+|++|+|||||++.|++...... .    .|.......... .+..+.+|||||...+......  ..+|++++
T Consensus       165 ~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-~----pT~~~~~~~~~~-~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vil  238 (329)
T 3o47_A          165 EMRILMVGLDAAGKTTILYKLKLGEIVTT-I----PTIGFNVETVEY-KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF  238 (329)
T ss_dssp             SEEEEEEESTTSSHHHHHHHTCSSCCEEE-E----EETTEEEEEEEE-TTEEEEEEECC-----CCSHHHHHTTEEEEEE
T ss_pred             cceEEEECCCCccHHHHHHHHhCCCCCCc-c----cccceEEEEEec-CcEEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence            36999999999999999999998764322 1    244445555556 7789999999998877665444  88999999


Q ss_pred             EEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363           97 VFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        97 v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~  139 (240)
                      |+|+++..+.... ..+..+..... ....|+++|+||+|....
T Consensus       239 V~D~~~~~s~~~~~~~~~~~~~~~~-~~~~piilV~NK~Dl~~~  281 (329)
T 3o47_A          239 VVDSNDRERVNEAREELMRMLAEDE-LRDAVLLVFANKQDLPNA  281 (329)
T ss_dssp             EEETTCSSSHHHHHHHHHHHHTCGG-GTTCEEEEEEECTTSTTC
T ss_pred             EEECCchHHHHHHHHHHHHHHhhhc-cCCCeEEEEEECccCCcc
Confidence            9999876666542 23333322111 124689999999996543

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.58  E-value=1.8e-15  Score=128.67  Aligned_cols=112  Identities=22%  Similarity=0.181  Sum_probs=74.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC----------C
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF----------D   89 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~----------~   89 (240)
                      .+|+|+|.+|+|||||+|+|+|...... ....+.|....+....+ .+..+.+|||||+.........          .
T Consensus        24 ~~V~lvG~~nvGKSTL~n~l~~~~~~~v-~~~~g~t~~~~~~~~~~-~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~  101 (456)
T 4dcu_A           24 PVVAIVGRPNVGKSTIFNRIAGERISIV-EDTPGVTRDRIYSSAEW-LNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMD  101 (456)
T ss_dssp             CEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTT-CSSCCEEECCCC------CCHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCCCccc-CCCCCcceeEEEEEEEE-CCceEEEEECCCCCCcchHHHHHHHHHHHhhHh
Confidence            6999999999999999999998754322 22356666666666666 6788999999998743222111          7


Q ss_pred             CceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           90 EIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        90 ~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      .+|++++|+|+..+++..+...++.+..     ...|+++|+||+|...
T Consensus       102 ~ad~il~VvD~~~~~~~~d~~l~~~l~~-----~~~pvilV~NK~D~~~  145 (456)
T 4dcu_A          102 EADVIIFMVNGREGVTAADEEVAKILYR-----TKKPVVLAVNKLDNTE  145 (456)
T ss_dssp             HCSEEEEEEESSSCSCHHHHHHHHHHTT-----CCSCEEEEEECC----
T ss_pred             hCCEEEEEEeCCCCCChHHHHHHHHHHH-----cCCCEEEEEECccchh
Confidence            8999999999988888888777766642     3467999999999653

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=99.58  E-value=1.9e-15  Score=114.70  Aligned_cols=115  Identities=17%  Similarity=0.187  Sum_probs=74.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEE
Q 036363           19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAA   94 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~   94 (240)
                      ..+|+++|++|+|||||++++++.........  ..+.........+ ++  ..+.+|||||...+......  ..+|++
T Consensus        29 ~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~--t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i  105 (201)
T 2hup_A           29 LFKLVLVGDASVGKTCVVQRFKTGAFSERQGS--TIGVDFTMKTLEI-QGKRVKLQIWDTAGQERFRTITQSYYRSANGA  105 (201)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSCC------------CEEEEEEEE-TTEEEEEEEECCTTCGGGHHHHHHHHTTCSEE
T ss_pred             ceEEEEECcCCCCHHHHHHHHhhCCCCCCCCC--CcceEEEEEEEEE-CCEEEEEEEEECCCcHhHHHHHHHHHhhCCEE
Confidence            47999999999999999999997664222111  1112222233344 44  47889999998765433222  889999


Q ss_pred             EEEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           95 LVVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        95 l~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      ++|+|++++.+... ..++..+.....  ...|+++|+||+|...
T Consensus       106 ilv~D~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~NK~Dl~~  148 (201)
T 2hup_A          106 ILAYDITKRSSFLSVPHWIEDVRKYAG--SNIVQLLIGNKSDLSE  148 (201)
T ss_dssp             EEEEETTBHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCGG
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECCcccc
Confidence            99999986544433 344455544432  2368999999999654

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.58  E-value=6.5e-14  Score=106.73  Aligned_cols=117  Identities=16%  Similarity=0.245  Sum_probs=71.7

Q ss_pred             ccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCc----
Q 036363           12 LTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSE----   87 (240)
Q Consensus        12 ~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~----   87 (240)
                      |++.++  .+|+++|++|+|||||+|+|+|...........+.+.....  ..+ .+ .+.+|||||+........    
T Consensus        21 ~~~~~~--~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~--~~~-~~-~~~l~Dt~G~~~~~~~~~~~~~   94 (210)
T 1pui_A           21 LPSDTG--IEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINL--FEV-AD-GKRLVDLPGYGYAEVPEEMKRK   94 (210)
T ss_dssp             SSCSCS--EEEEEEECTTSSHHHHHTTTCCC-------------CCEEE--EEE-ET-TEEEEECCCCC------CCHHH
T ss_pred             CCCCCC--cEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEE--EEe-cC-CEEEEECcCCcccccCHHHHHH
Confidence            777888  99999999999999999999997621111122233333222  222 23 577999999865321110    


Q ss_pred             ------C-----CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363           88 ------F-----DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        88 ------~-----~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~  139 (240)
                            .     ...+++++++++..+.+..+.....++. ..    ..|+++|.||+|.+..
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~-~~----~~~~~~v~nK~D~~s~  152 (210)
T 1pui_A           95 WQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAV-DS----NIAVLVLLTKADKLAS  152 (210)
T ss_dssp             HHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHH-HT----TCCEEEEEECGGGSCH
T ss_pred             HHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHH-Hc----CCCeEEEEecccCCCc
Confidence                  0     5789999999998777765544444443 22    2468889999996643

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.58  E-value=9.2e-15  Score=115.92  Aligned_cols=108  Identities=19%  Similarity=0.188  Sum_probs=73.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC----------
Q 036363           19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF----------   88 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~----------   88 (240)
                      ..+|+++|++|+|||||+|+|+|...+.+..  .+.|.......+.  .+..+.+|||||+..+......          
T Consensus         3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~--pg~tv~~~~~~~~--~~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~   78 (272)
T 3b1v_A            3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNW--PGVTVERKSGLVK--KNKDLEIQDLPGIYSMSPYSPEAKVARDYLLS   78 (272)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHCCCCCCCSS--SCCCCSCEEEECT--TCTTEEEEECCCCSCSSCSSHHHHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHCCCCcccCC--CCCcEEEEEEEEe--cCCeEEEEECCCcCccCCCChHHHHHHHHHhc
Confidence            3799999999999999999999976443332  3455543333221  1567899999999987643211          


Q ss_pred             CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363           89 DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDEL  137 (240)
Q Consensus        89 ~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~  137 (240)
                      ..+|++++|+|+++.  .....++..+.+     ...|+++|+||+|..
T Consensus        79 ~~~d~vi~V~D~t~~--e~~~~~~~~l~~-----~~~p~ilv~NK~Dl~  120 (272)
T 3b1v_A           79 QRADSILNVVDATNL--ERNLYLTTQLIE-----TGIPVTIALNMIDVL  120 (272)
T ss_dssp             TCCSEEEEEEEGGGH--HHHHHHHHHHHH-----TCSCEEEEEECHHHH
T ss_pred             CCCCEEEEEecCCch--HhHHHHHHHHHh-----cCCCEEEEEEChhhC
Confidence            379999999999842  122233333332     236799999999954

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=99.58  E-value=8.7e-15  Score=109.79  Aligned_cols=117  Identities=23%  Similarity=0.180  Sum_probs=73.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC-CCceEE
Q 036363           18 GVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF-DEIHAA   94 (240)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~-~~~~~~   94 (240)
                      ...+|+++|++|+|||||++++++...........+...   ...... ++  ..+.+|||||...+...... ..+|++
T Consensus        20 ~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~---~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~   95 (187)
T 3c5c_A           20 LEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY---SSEETV-DHQPVHLRVMDTADLDTPRNCERYLNWAHAF   95 (187)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE---EEEEEE-TTEEEEEEEEECCC---CCCTHHHHTTCSEE
T ss_pred             ceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee---eEEEEE-CCEEEEEEEEECCCCCcchhHHHHHhhCCEE
Confidence            448999999999999999999998764322222111111   112223 33  36789999999877653222 789999


Q ss_pred             EEEEECCCCCCHHHH-HHHHHHHHHhCC-CcCCeEEEEEeCCCCCC
Q 036363           95 LVVFSVRSRFSQEEE-ATLHSLQTLFGK-NCFDYMIVVFSGRDELE  138 (240)
Q Consensus        95 l~v~~~~~~~~~~~~-~~l~~l~~~~~~-~~~~~~i~v~~~~D~~~  138 (240)
                      ++|++++++.+.... .++..+...... ....|+++|+||+|...
T Consensus        96 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~  141 (187)
T 3c5c_A           96 LVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQ  141 (187)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGG
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhh
Confidence            999999865555442 344445443210 12367999999999543

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.58  E-value=6.4e-15  Score=110.83  Aligned_cols=116  Identities=11%  Similarity=0.096  Sum_probs=71.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC------CCc
Q 036363           18 GVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF------DEI   91 (240)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~------~~~   91 (240)
                      ...+|+++|++|+|||||+|+|++........ ....+..     ..+ ....+.+|||||+..+......      ..+
T Consensus        47 ~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~-~~~~~~~-----~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~  119 (193)
T 2ged_A           47 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVV-SQEPLSA-----ADY-DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFV  119 (193)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHSSCC------------------CC-CCTTCSEEEETTCCBSSCCHHHHHHHHGGGE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCcccc-cCCCcee-----eee-cCCeEEEEECCCCchHHHHHHHHHHhhcccC
Confidence            34799999999999999999999876422110 0111111     111 4567889999999877554433      348


Q ss_pred             eEEEEEEECC-CCCCHHH-HHHHHHHHHHhC--CCcCCeEEEEEeCCCCCCCC
Q 036363           92 HAALVVFSVR-SRFSQEE-EATLHSLQTLFG--KNCFDYMIVVFSGRDELEAN  140 (240)
Q Consensus        92 ~~~l~v~~~~-~~~~~~~-~~~l~~l~~~~~--~~~~~~~i~v~~~~D~~~~~  140 (240)
                      |++++|+|++ +..+... ..++..+.....  .....|+++|+||+|.....
T Consensus       120 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~  172 (193)
T 2ged_A          120 KGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTAR  172 (193)
T ss_dssp             EEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred             CEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCC
Confidence            9999999997 3322222 223333332211  11236799999999976543

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.58  E-value=5.8e-15  Score=123.66  Aligned_cols=117  Identities=21%  Similarity=0.231  Sum_probs=80.7

Q ss_pred             CCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCc-EEEEEeCCCCCCCCCCCcC-----
Q 036363           15 PSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQ-VVNVIDTPGLFDFSAGSEF-----   88 (240)
Q Consensus        15 ~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~l~DtpG~~~~~~~~~~-----   88 (240)
                      +.+...+|+++|+.|+|||||+|+|++....... ...+.|.........+ .+. .+.+|||||+.++......     
T Consensus        30 ~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~-~~~gtT~d~~~~~~~~-~~~~~l~liDTpG~~d~~~l~~~~~~~~  107 (423)
T 3qq5_A           30 DAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVS-DYAGTTTDPVYKSMEL-HPIGPVTLVDTPGLDDVGELGRLRVEKA  107 (423)
T ss_dssp             --CCCEEEEEECSCSTTTTTTTTSSCC--------------CCCCEEEEEE-TTTEEEEEEECSSTTCCCTTCCCCHHHH
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHcCCCCccC-CCCCeeeeeEEEEEEE-CCCCeEEEEECcCCCcccchhHHHHHHH
Confidence            3445689999999999999999999987653222 2245555555566666 444 8999999999988654332     


Q ss_pred             ----CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCC
Q 036363           89 ----DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEAN  140 (240)
Q Consensus        89 ----~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~  140 (240)
                          ..+|++++|+|+  .....+..++..+.+.     ..|+++|+||+|.....
T Consensus       108 ~~~l~~aD~vllVvD~--~~~~~~~~~l~~l~~~-----~~piIvV~NK~Dl~~~~  156 (423)
T 3qq5_A          108 RRVFYRADCGILVTDS--APTPYEDDVVNLFKEM-----EIPFVVVVNKIDVLGEK  156 (423)
T ss_dssp             HHHHTSCSEEEEECSS--SCCHHHHHHHHHHHHT-----TCCEEEECCCCTTTTCC
T ss_pred             HHHHhcCCEEEEEEeC--CChHHHHHHHHHHHhc-----CCCEEEEEeCcCCCCcc
Confidence                789999999998  5566667777777653     36799999999976554

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=99.58  E-value=4.4e-15  Score=113.91  Aligned_cols=144  Identities=13%  Similarity=0.107  Sum_probs=84.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeC-----------CcEEEEEeCCCCCCCCCCCc
Q 036363           19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKD-----------GQVVNVIDTPGLFDFSAGSE   87 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~-----------~~~~~l~DtpG~~~~~~~~~   87 (240)
                      ..+|+|+|++|+|||||+|+|++.........  ..+.........+..           ...+.+|||||...+.....
T Consensus        25 ~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~  102 (217)
T 2f7s_A           25 LIKLLALGDSGVGKTTFLYRYTDNKFNPKFIT--TVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTT  102 (217)
T ss_dssp             EEEEEEESCTTSSHHHHHHHHHCSCCCCEEEE--EEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHH
T ss_pred             eEEEEEECcCCCCHHHHHHHHhcCCCCcCCCC--ceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHHH
Confidence            47999999999999999999998754222111  111111112222211           35789999999765433222


Q ss_pred             C--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCC--cCCeEEEEEeCCCCCCCCcccHHHHhcccCCchHHHHHHHh
Q 036363           88 F--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKN--CFDYMIVVFSGRDELEANDETLEDYLGRECPKPLKEILHLF  163 (240)
Q Consensus        88 ~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~--~~~~~i~v~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (240)
                      .  ..+|++++|+|+++..+.....  .++.......  ...|+++|+||+|........         ......+....
T Consensus       103 ~~~~~~d~iilV~D~~~~~s~~~~~--~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~---------~~~~~~~~~~~  171 (217)
T 2f7s_A          103 AFFRDAMGFLLMFDLTSQQSFLNVR--NWMSQLQANAYCENPDIVLIGNKADLPDQREVN---------ERQARELADKY  171 (217)
T ss_dssp             HHHTTCCEEEEEEETTCHHHHHHHH--HHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSC---------HHHHHHHHHHT
T ss_pred             HHhcCCCEEEEEEECcCHHHHHHHH--HHHHHHHHhcCcCCCCEEEEEECCccccccccC---------HHHHHHHHHHC
Confidence            2  8899999999998544333221  2222221111  347899999999964322111         11234445555


Q ss_pred             CCcEEEEeCCCc
Q 036363          164 DNRCVLFDNKTK  175 (240)
Q Consensus       164 ~~~~~~~~~~~~  175 (240)
                      +..++..+....
T Consensus       172 ~~~~~~~Sa~~g  183 (217)
T 2f7s_A          172 GIPYFETSAATG  183 (217)
T ss_dssp             TCCEEEEBTTTT
T ss_pred             CCcEEEEECCCC
Confidence            667777776543

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.58  E-value=1.9e-15  Score=127.94  Aligned_cols=112  Identities=22%  Similarity=0.183  Sum_probs=71.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC----------C
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF----------D   89 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~----------~   89 (240)
                      .+|+++|.+|+|||||+|+|+|...... ....+.|....+....+ .+..+.+|||||+.........          .
T Consensus         4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v-~~~~g~T~d~~~~~~~~-~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~   81 (436)
T 2hjg_A            4 PVVAIVGRPNVGKSTIFNRIAGERISIV-EDTPGVTRDRIYSSAEW-LNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMD   81 (436)
T ss_dssp             CEEEEECSTTSSHHHHHHHHEEEECC------------CEEEECTT-CSSCCEEEC---------CHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceee-cCCCCCccceEEEEEEE-CCceEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence            5899999999999999999998754322 22356666666666666 6788999999999743221110          7


Q ss_pred             CceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           90 EIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        90 ~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      .+|++++|+|+.++.+..+..+...+.     ....|+++|+||+|...
T Consensus        82 ~ad~il~vvD~~~~~~~~d~~~~~~l~-----~~~~pvilv~NK~D~~~  125 (436)
T 2hjg_A           82 EADVIIFMVNGREGVTAADEEVAKILY-----RTKKPVVLAVNKLDNTE  125 (436)
T ss_dssp             HCSEEEEEEETTTCSCHHHHHHHHHHT-----TCCSCEEEEEECCCC--
T ss_pred             hCCEEEEEEeCCCCCCHHHHHHHHHHH-----HcCCCEEEEEECccCcc
Confidence            899999999999888888766555443     23468999999999653

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.57  E-value=2.2e-14  Score=119.88  Aligned_cols=117  Identities=20%  Similarity=0.268  Sum_probs=68.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCC----CCcceeEEEEEEEEe-CC--cEEEEEeCCCCCCCCCC----
Q 036363           17 NGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASS----SGVTSTCEMHRTVLK-DG--QVVNVIDTPGLFDFSAG----   85 (240)
Q Consensus        17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~----~~~t~~~~~~~~~~~-~~--~~~~l~DtpG~~~~~~~----   85 (240)
                      +-..+|+|+|+||+|||||+|+|+|...+..+...    ...+........... .+  ..+.+|||||+......    
T Consensus        29 ~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~  108 (418)
T 2qag_C           29 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW  108 (418)
T ss_dssp             CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------C
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhH
Confidence            33367899999999999999999998753332110    011211111111110 11  26789999999865210    


Q ss_pred             -----------------------C--cCCCceEEEEEEECC-CCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363           86 -----------------------S--EFDEIHAALVVFSVR-SRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        86 -----------------------~--~~~~~~~~l~v~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~  139 (240)
                                             .  ..+.+|+++|+++++ ..++..+..+++.+.    .  ..++|+|+||+|.+.+
T Consensus       109 ~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~----~--~v~iIlVinK~Dll~~  182 (418)
T 2qag_C          109 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH----E--KVNIIPLIAKADTLTP  182 (418)
T ss_dssp             HHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT----T--TSEEEEEEESTTSSCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh----c--cCcEEEEEEcccCccH
Confidence                                   0  015567788888886 578888876766653    2  3679999999997754

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.57  E-value=1.3e-14  Score=122.65  Aligned_cols=117  Identities=14%  Similarity=0.186  Sum_probs=81.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCCc--cc------------cC-----------------CCCCcceeEEEEEEEE
Q 036363           17 NGVRTVVLVGHTGNGKSATGNSILGRRAF--KS------------RA-----------------SSSGVTSTCEMHRTVL   65 (240)
Q Consensus        17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~--~~------------~~-----------------~~~~~t~~~~~~~~~~   65 (240)
                      ....+|+++|+.++|||||+++|++....  ..            +.                 ...+.|....+....+
T Consensus        22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~  101 (434)
T 1zun_B           22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST  101 (434)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence            34589999999999999999999864310  00            00                 0024455555555555


Q ss_pred             eCCcEEEEEeCCCCCCCCCCCcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           66 KDGQVVNVIDTPGLFDFSAGSEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        66 ~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                       .+..+.+|||||+.++......  ..+|++++|+|++++...+....+..+.. ++   .+++++|+||+|...
T Consensus       102 -~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~-~~---~~~iIvviNK~Dl~~  171 (434)
T 1zun_B          102 -AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASL-LG---IKHIVVAINKMDLNG  171 (434)
T ss_dssp             -SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHH-TT---CCEEEEEEECTTTTT
T ss_pred             -CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHH-cC---CCeEEEEEEcCcCCc
Confidence             6778999999998876433222  88999999999998887777766655542 22   357999999999665

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.57  E-value=2.8e-15  Score=129.07  Aligned_cols=116  Identities=17%  Similarity=0.236  Sum_probs=85.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCcc----------------cc----CCCCCcceeEEEEEEEEeCCcEEEEEeCC
Q 036363           18 GVRTVVLVGHTGNGKSATGNSILGRRAFK----------------SR----ASSSGVTSTCEMHRTVLKDGQVVNVIDTP   77 (240)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~----------------~~----~~~~~~t~~~~~~~~~~~~~~~~~l~Dtp   77 (240)
                      ..++|+|+|++|+|||||+|+|++.....                ..    ....+.|.......+.+ .+..+++||||
T Consensus        12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~~~i~liDTP   90 (528)
T 3tr5_A           12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPY-KDYLINLLDTP   90 (528)
T ss_dssp             TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEE-TTEEEEEECCC
T ss_pred             cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEe-CCEEEEEEECC
Confidence            45899999999999999999997221110                00    00123444444455666 78899999999


Q ss_pred             CCCCCCCCCcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363           78 GLFDFSAGSEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        78 G~~~~~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~  139 (240)
                      |+.++......  ..+|++++|+|++.+.+......+..+...     ..|+++|+||+|....
T Consensus        91 G~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~-----~iPiivviNK~Dl~~~  149 (528)
T 3tr5_A           91 GHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLR-----HTPIMTFINKMDRDTR  149 (528)
T ss_dssp             CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTT-----TCCEEEEEECTTSCCS
T ss_pred             CchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHc-----CCCEEEEEeCCCCccc
Confidence            99887654433  889999999999988888888888766532     2579999999997544

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.57  E-value=5.7e-15  Score=125.73  Aligned_cols=110  Identities=23%  Similarity=0.301  Sum_probs=81.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCC-CCCCCCcC----------
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLF-DFSAGSEF----------   88 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~-~~~~~~~~----------   88 (240)
                      .+|+|+|.+|+|||||+|+|++........ ..++|.......+.+ ++..+.+|||||+. .+......          
T Consensus       244 ~kV~ivG~pnvGKSSLln~L~~~~~a~vs~-~~gTT~d~~~~~i~~-~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~  321 (482)
T 1xzp_A          244 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTD-IPGTTRDVISEEIVI-RGILFRIVDTAGVRSETNDLVERLGIERTLQEI  321 (482)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHTBCCCCC-SSCCSSCSCCEEEEE-TTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHH
T ss_pred             CEEEEECcCCCcHHHHHHHHHCCCCCccCC-CCCeeeeeEEEEEec-CCeEEEEEECCCccccchhhHHHHHHHHHHHHh
Confidence            799999999999999999999875322222 234555555555666 78899999999998 65432221          


Q ss_pred             CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           89 DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        89 ~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      ..+|++++|+|++++.+..+...++.+    .   ..|+++|+||+|...
T Consensus       322 ~~aD~vl~VvD~s~~~s~~~~~il~~l----~---~~piivV~NK~DL~~  364 (482)
T 1xzp_A          322 EKADIVLFVLDASSPLDEEDRKILERI----K---NKRYLVVINKVDVVE  364 (482)
T ss_dssp             HHCSEEEEEEETTSCCCHHHHHHHHHH----T---TSSEEEEEEECSSCC
T ss_pred             hcccEEEEEecCCCCCCHHHHHHHHHh----c---CCCEEEEEECccccc
Confidence            789999999999988887776655433    2   257999999999643

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=99.57  E-value=5.6e-15  Score=111.30  Aligned_cols=121  Identities=10%  Similarity=0.063  Sum_probs=76.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCC------CCcceeEEEEEE---EE-eCCcEEEEEeCCCCCCCCCCCc
Q 036363           18 GVRTVVLVGHTGNGKSATGNSILGRRAFKSRASS------SGVTSTCEMHRT---VL-KDGQVVNVIDTPGLFDFSAGSE   87 (240)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~------~~~t~~~~~~~~---~~-~~~~~~~l~DtpG~~~~~~~~~   87 (240)
                      ...+|+++|++|+|||||++.+.+..........      ...|....+...   .. .....+.+|||||...+.....
T Consensus        13 ~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~   92 (198)
T 3t1o_A           13 INFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNASRK   92 (198)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSHHHH
T ss_pred             cccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHHHHH
Confidence            3489999999999999999988876432211100      111222221111   11 0123688999999887655444


Q ss_pred             C--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhC----CCcCCeEEEEEeCCCCCC
Q 036363           88 F--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFG----KNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        88 ~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~----~~~~~~~i~v~~~~D~~~  138 (240)
                      .  ..+|++++|+|++++.+..+...+..+...+.    .....|+++|+||+|...
T Consensus        93 ~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~  149 (198)
T 3t1o_A           93 LILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPD  149 (198)
T ss_dssp             HHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTT
T ss_pred             HHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhccc
Confidence            3  88999999999985555555555544443321    223468999999999544

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=99.57  E-value=1.6e-14  Score=108.10  Aligned_cols=113  Identities=19%  Similarity=0.145  Sum_probs=74.8

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCc--EEEEEeCCCCCCCCCCCcCCCceE
Q 036363           16 SNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQ--VVNVIDTPGLFDFSAGSEFDEIHA   93 (240)
Q Consensus        16 ~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~   93 (240)
                      +....+|+++|++|+|||||++.+++.........    |.........+ ++.  .+.+|||||...+.   ....+|+
T Consensus        17 ~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~----t~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~---~~~~~~~   88 (184)
T 3ihw_A           17 QGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESP----EGGRFKKEIVV-DGQSYLLLIRDEGGPPELQ---FAAWVDA   88 (184)
T ss_dssp             CCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCT----TCEEEEEEEEE-TTEEEEEEEEECSSSCCHH---HHHHCSE
T ss_pred             CCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCC----CcceEEEEEEE-CCEEEEEEEEECCCChhhh---eecCCCE
Confidence            34558999999999999999999988764322211    11111133344 553  56789999987654   2266899


Q ss_pred             EEEEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363           94 ALVVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDEL  137 (240)
Q Consensus        94 ~l~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~  137 (240)
                      +++|+|++++.+... ..++..+.... .....|+++|+||+|..
T Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~piilv~nK~Dl~  132 (184)
T 3ihw_A           89 VVFVFSLEDEISFQTVYNYFLRLCSFR-NASEVPMVLVGTQDAIS  132 (184)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHTTS-CGGGSCEEEEEECTTCB
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEECcccc
Confidence            999999996655555 34444443321 11346799999999964

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=99.56  E-value=3.2e-14  Score=126.43  Aligned_cols=116  Identities=20%  Similarity=0.262  Sum_probs=75.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcc-e----------eEE----------------------------
Q 036363           19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVT-S----------TCE----------------------------   59 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t-~----------~~~----------------------------   59 (240)
                      ..+|+|+|.+|+|||||+|+|+|....+.+..+.... .          +..                            
T Consensus        69 ~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~~  148 (695)
T 2j69_A           69 VFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAKK  148 (695)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHHH
Confidence            3899999999999999999999987544433221100 0          000                            


Q ss_pred             -------------EEEEEEeCC---cEEEEEeCCCCCCCCCCCcC-----CCceEEEEEEECCCCCCHHHHHHHHHHHHH
Q 036363           60 -------------MHRTVLKDG---QVVNVIDTPGLFDFSAGSEF-----DEIHAALVVFSVRSRFSQEEEATLHSLQTL  118 (240)
Q Consensus        60 -------------~~~~~~~~~---~~~~l~DtpG~~~~~~~~~~-----~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~  118 (240)
                                   ...+.++..   ..+.+|||||+.+.......     ..+|++++|++++.+.+..+...+....  
T Consensus       149 l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l--  226 (695)
T 2j69_A          149 LEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYI--  226 (695)
T ss_dssp             HHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHT--
T ss_pred             HhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHH--
Confidence                         000111000   36899999998764322111     7799999999999888888776664322  


Q ss_pred             hCCCcCCeEEEEEeCCCCCC
Q 036363          119 FGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus       119 ~~~~~~~~~i~v~~~~D~~~  138 (240)
                       .. ...|+++|+||+|...
T Consensus       227 -~~-~~~~iiiVlNK~Dl~~  244 (695)
T 2j69_A          227 -KG-RGLTVFFLVNAWDQVR  244 (695)
T ss_dssp             -TT-SCCCEEEEEECGGGGG
T ss_pred             -Hh-hCCCEEEEEECccccc
Confidence             11 2356999999999654

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=99.56  E-value=1.4e-14  Score=107.51  Aligned_cols=111  Identities=17%  Similarity=0.096  Sum_probs=72.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcCCCceEEEE
Q 036363           19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEFDEIHAALV   96 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~l~   96 (240)
                      ..+|+++|++|+|||||++++++..... ...+.+..   ....... ++  ..+.+|||||....   .....+|++++
T Consensus         7 ~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~---~~~~~~~-~~~~~~l~i~Dt~G~~~~---~~~~~~d~~il   78 (178)
T 2iwr_A            7 ELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQ---YKKEMLV-DGQTHLVLIREEAGAPDA---KFSGWADAVIF   78 (178)
T ss_dssp             EEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSE---EEEEEEE-TTEEEEEEEEECSSSCCH---HHHHHCSEEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCccee---EEEEEEE-CCEEEEEEEEECCCCchh---HHHHhCCEEEE
Confidence            4899999999999999999999876432 22222211   1222333 44  35789999998651   11177899999


Q ss_pred             EEECCCCCCHHHHH-HHHHHHHHhCC-CcCCeEEEEEeCCCCC
Q 036363           97 VFSVRSRFSQEEEA-TLHSLQTLFGK-NCFDYMIVVFSGRDEL  137 (240)
Q Consensus        97 v~~~~~~~~~~~~~-~l~~l~~~~~~-~~~~~~i~v~~~~D~~  137 (240)
                      |+|++++.+..... ++.++...... ....|+++|+||+|..
T Consensus        79 v~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~  121 (178)
T 2iwr_A           79 VFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRIS  121 (178)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCB
T ss_pred             EEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence            99998666555543 33344444321 1246899999999963

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.56  E-value=1e-13  Score=114.31  Aligned_cols=114  Identities=20%  Similarity=0.161  Sum_probs=81.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC----------
Q 036363           19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF----------   88 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~----------   88 (240)
                      ..+|+++|++|+|||||+|.|++........  .+.|.......... .+..+.+|||||+.+.......          
T Consensus       167 ~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~--~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~  243 (357)
T 2e87_A          167 IPTVVIAGHPNVGKSTLLKALTTAKPEIASY--PFTTRGINVGQFED-GYFRYQIIDTPGLLDRPISERNEIEKQAILAL  243 (357)
T ss_dssp             SCEEEEECSTTSSHHHHHHHHCSSCCEEECC--TTCSSCEEEEEEEE-TTEEEEEEECTTTSSSCSTTSCHHHHHHHHGG
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCccCCC--CCeeeceeEEEEEe-cCceEEEEeCCCccccchhhhhHHHHHHHHHH
Confidence            4799999999999999999999986432222  23444444444545 6778999999999775432211          


Q ss_pred             -CCceEEEEEEECCCCC--CHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           89 -DEIHAALVVFSVRSRF--SQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        89 -~~~~~~l~v~~~~~~~--~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                       ..+|++++|+|+++..  +..+ ..++..+...++   ..|+++|+||+|...
T Consensus       244 ~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~---~~piilV~NK~Dl~~  294 (357)
T 2e87_A          244 RYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK---DLPFLVVINKIDVAD  294 (357)
T ss_dssp             GGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT---TSCEEEEECCTTTCC
T ss_pred             HhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC---CCCEEEEEECcccCC
Confidence             4689999999987543  5554 466666666553   367999999999554

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.56  E-value=1.5e-14  Score=123.83  Aligned_cols=117  Identities=16%  Similarity=0.264  Sum_probs=79.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCcc-----------------------------ccCCCCCcceeEEEEEEEEeCC
Q 036363           18 GVRTVVLVGHTGNGKSATGNSILGRRAFK-----------------------------SRASSSGVTSTCEMHRTVLKDG   68 (240)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~-----------------------------~~~~~~~~t~~~~~~~~~~~~~   68 (240)
                      +..+|+++|++|+|||||+++|++.....                             ......+.|.......+.+ .+
T Consensus        32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~  110 (483)
T 3p26_A           32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST-HR  110 (483)
T ss_dssp             CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEEC-SS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEec-CC
Confidence            34899999999999999999997641100                             0011235566666666666 77


Q ss_pred             cEEEEEeCCCCCCCCCCCcC--CCceEEEEEEECCCC-------CCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363           69 QVVNVIDTPGLFDFSAGSEF--DEIHAALVVFSVRSR-------FSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        69 ~~~~l~DtpG~~~~~~~~~~--~~~~~~l~v~~~~~~-------~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~  139 (240)
                      ..+.+|||||+.++......  ..+|++++|+|++++       ........+..+. .++   .+++++|+||+|....
T Consensus       111 ~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~-~~~---~~~iIvviNK~Dl~~~  186 (483)
T 3p26_A          111 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLAS-SLG---IHNLIIAMNKMDNVDW  186 (483)
T ss_dssp             CEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHH-HTT---CCCEEEEEECGGGGTT
T ss_pred             ceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHH-HcC---CCcEEEEEECcCcccc
Confidence            89999999999776433322  889999999999865       3344444444333 222   2569999999996653

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.55  E-value=2.1e-14  Score=121.38  Aligned_cols=117  Identities=21%  Similarity=0.253  Sum_probs=82.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCCcccc-----------------------------CCCCCcceeEEEEEEEEeC
Q 036363           17 NGVRTVVLVGHTGNGKSATGNSILGRRAFKSR-----------------------------ASSSGVTSTCEMHRTVLKD   67 (240)
Q Consensus        17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~-----------------------------~~~~~~t~~~~~~~~~~~~   67 (240)
                      ....+|+++|+.++|||||+++|++.......                             ....+.|....+..+.+ .
T Consensus        15 k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~-~   93 (439)
T 3j2k_7           15 KEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFET-E   93 (439)
T ss_pred             CceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEec-C
Confidence            34589999999999999999999654221100                             01135677777666766 7


Q ss_pred             CcEEEEEeCCCCCCCCCCCcC--CCceEEEEEEECCCCCC-------HHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           68 GQVVNVIDTPGLFDFSAGSEF--DEIHAALVVFSVRSRFS-------QEEEATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        68 ~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~v~~~~~~~~-------~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      +..+.+|||||+.++......  ..+|++++|+|++.+..       .+....+..+.. ++   .+++++++||+|...
T Consensus        94 ~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~-~~---v~~iIvviNK~Dl~~  169 (439)
T 3j2k_7           94 KKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT-AG---VKHLIVLINKMDDPT  169 (439)
T ss_pred             CeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH-cC---CCeEEEEeecCCCcc
Confidence            789999999999887543333  78999999999986543       344444444432 22   356999999999643

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.54  E-value=1.8e-14  Score=118.87  Aligned_cols=117  Identities=21%  Similarity=0.222  Sum_probs=64.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCC-----CCcceeEEEEEEEEe-CCc--EEEEEeCCCCCCCC-----
Q 036363           17 NGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASS-----SGVTSTCEMHRTVLK-DGQ--VVNVIDTPGLFDFS-----   83 (240)
Q Consensus        17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~-----~~~t~~~~~~~~~~~-~~~--~~~l~DtpG~~~~~-----   83 (240)
                      +...+|+|+|++|+|||||+|+|++...+..+...     ...|........... .+.  .+.+|||||+.+..     
T Consensus        35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~  114 (361)
T 2qag_A           35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC  114 (361)
T ss_dssp             CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred             CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence            34478999999999999999999887655443211     112332222222111 232  68899999995442     


Q ss_pred             --CCCc-------C---------------CCceEEEEEEEC-CCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           84 --AGSE-------F---------------DEIHAALVVFSV-RSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        84 --~~~~-------~---------------~~~~~~l~v~~~-~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                        ....       .               ..+|+++|+++. ...+...+..+++.+    .  ...|+++|+||+|.+.
T Consensus       115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l----~--~~~piIlV~NK~Dl~~  188 (361)
T 2qag_A          115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI----H--NKVNIVPVIAKADTLT  188 (361)
T ss_dssp             -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT----C--S-SCEEEEEECCSSSC
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh----c--cCCCEEEEEECCCCCC
Confidence              2221       0               345789998876 356776666555544    2  2367999999999765


Q ss_pred             C
Q 036363          139 A  139 (240)
Q Consensus       139 ~  139 (240)
                      .
T Consensus       189 ~  189 (361)
T 2qag_A          189 L  189 (361)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.54  E-value=2e-14  Score=125.86  Aligned_cols=117  Identities=15%  Similarity=0.238  Sum_probs=80.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccC-----------------------------CCCCcceeEEEEEEEEeCC
Q 036363           18 GVRTVVLVGHTGNGKSATGNSILGRRAFKSRA-----------------------------SSSGVTSTCEMHRTVLKDG   68 (240)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~-----------------------------~~~~~t~~~~~~~~~~~~~   68 (240)
                      +..+|+++|++|+|||||+|+|++........                             ...|.|.......+.+ .+
T Consensus       166 ~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~-~~  244 (611)
T 3izq_1          166 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST-HR  244 (611)
T ss_dssp             CCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEEC-SS
T ss_pred             CceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEec-CC
Confidence            45899999999999999999999763311100                             0135566665566666 77


Q ss_pred             cEEEEEeCCCCCCCCCCCcC--CCceEEEEEEECCCC-------CCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363           69 QVVNVIDTPGLFDFSAGSEF--DEIHAALVVFSVRSR-------FSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        69 ~~~~l~DtpG~~~~~~~~~~--~~~~~~l~v~~~~~~-------~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~  139 (240)
                      ..+.+|||||+.++......  ..+|++|+|+|++.+       ...+....+..+.    ....+++++|+||+|....
T Consensus       245 ~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~----~lgi~~iIVVvNKiDl~~~  320 (611)
T 3izq_1          245 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLAS----SLGIHNLIIAMNKMDNVDW  320 (611)
T ss_dssp             CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHH----TTTCCEEEEEEECTTTTTT
T ss_pred             ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHH----HcCCCeEEEEEecccccch
Confidence            89999999999776433322  889999999999842       2233333333332    2223679999999997653

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=99.54  E-value=4.5e-13  Score=110.30  Aligned_cols=115  Identities=17%  Similarity=0.185  Sum_probs=68.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCC--CCCcc------------------------e-----------------
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRAS--SSGVT------------------------S-----------------   56 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~--~~~~t------------------------~-----------------   56 (240)
                      .+|+++|.+|+|||||+|+|+|....+.+..  ....+                        .                 
T Consensus        32 ~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~g~  111 (353)
T 2x2e_A           32 PQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGT  111 (353)
T ss_dssp             CEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHHTT
T ss_pred             CeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhccc
Confidence            6999999999999999999999865322211  00001                        0                 


Q ss_pred             ------eEEEEEEEEeCCcEEEEEeCCCCCCCCCC---Cc---C----------CCceEEEEEEECCCCCCHHHH-HHHH
Q 036363           57 ------TCEMHRTVLKDGQVVNVIDTPGLFDFSAG---SE---F----------DEIHAALVVFSVRSRFSQEEE-ATLH  113 (240)
Q Consensus        57 ------~~~~~~~~~~~~~~~~l~DtpG~~~~~~~---~~---~----------~~~~~~l~v~~~~~~~~~~~~-~~l~  113 (240)
                            .........+....+.+|||||+......   ..   .          ...+++++|++++..+...+. ..++
T Consensus       112 ~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~~  191 (353)
T 2x2e_A          112 NKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKVAK  191 (353)
T ss_dssp             TTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHHH
T ss_pred             CCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHHHH
Confidence                  00001111112467999999999764321   11   0          445667777787755544433 2333


Q ss_pred             HHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363          114 SLQTLFGKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus       114 ~l~~~~~~~~~~~~i~v~~~~D~~~~  139 (240)
                      .+    .. ...++++|+||+|.+..
T Consensus       192 ~~----~~-~~~~~i~V~NK~Dl~~~  212 (353)
T 2x2e_A          192 EV----DP-QGQRTIGVITKLDLMDE  212 (353)
T ss_dssp             HH----CT-TCTTEEEEEECGGGSCT
T ss_pred             Hh----Cc-CCCceEEEeccccccCc
Confidence            32    22 23679999999997654

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=99.54  E-value=1.4e-14  Score=125.25  Aligned_cols=116  Identities=20%  Similarity=0.259  Sum_probs=89.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCcc--------------------ccCCCCCcceeEEEEEEEEeCCcEEEEEeCC
Q 036363           18 GVRTVVLVGHTGNGKSATGNSILGRRAFK--------------------SRASSSGVTSTCEMHRTVLKDGQVVNVIDTP   77 (240)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~--------------------~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtp   77 (240)
                      ..++|+|+|+.++|||||..+|+-.....                    ......+.|......++.| ++..++|+|||
T Consensus        30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~-~~~~iNlIDTP  108 (548)
T 3vqt_A           30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPY-RDRVVNLLDTP  108 (548)
T ss_dssp             TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEE-TTEEEEEECCC
T ss_pred             ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEE-CCEEEEEEeCC
Confidence            45899999999999999999986221110                    0011235666666677788 99999999999


Q ss_pred             CCCCCCCCCcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363           78 GLFDFSAGSEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        78 G~~~~~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~  139 (240)
                      |+.||......  +.+|++++|+|+..+...+....|+.+.+.     ..|.++++||+|....
T Consensus       109 GHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~-----~lp~i~fINK~Dr~~a  167 (548)
T 3vqt_A          109 GHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMR-----ATPVMTFVNKMDREAL  167 (548)
T ss_dssp             CGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHT-----TCCEEEEEECTTSCCC
T ss_pred             CcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHh-----CCceEEEEecccchhc
Confidence            99999877666  999999999999999999999999888643     2568999999997655

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=99.53  E-value=3.6e-14  Score=122.28  Aligned_cols=116  Identities=17%  Similarity=0.214  Sum_probs=79.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccc--c------------------CCCCCcceeEEEEEEEEeCCcEEEEEeCC
Q 036363           18 GVRTVVLVGHTGNGKSATGNSILGRRAFKS--R------------------ASSSGVTSTCEMHRTVLKDGQVVNVIDTP   77 (240)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~--~------------------~~~~~~t~~~~~~~~~~~~~~~~~l~Dtp   77 (240)
                      ...+|+++|++|+|||||+++|++......  +                  ....+.|.......+.+ .+..+++||||
T Consensus        12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~-~~~~i~liDTP   90 (529)
T 2h5e_A           12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPY-HDCLVNLLDTP   90 (529)
T ss_dssp             TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEE-TTEEEEEECCC
T ss_pred             CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEE-CCeEEEEEECC
Confidence            348999999999999999999986321110  0                  00123333333344556 78899999999


Q ss_pred             CCCCCCCCCcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363           78 GLFDFSAGSEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        78 G~~~~~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~  139 (240)
                      |+.++......  ..+|++++|+|++++........+..+.    . ...|+++++||+|....
T Consensus        91 G~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~----~-~~ipiivviNK~Dl~~~  149 (529)
T 2h5e_A           91 GHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTR----L-RDTPILTFMNKLDRDIR  149 (529)
T ss_dssp             CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHT----T-TTCCEEEEEECTTSCCS
T ss_pred             CChhHHHHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHH----H-cCCCEEEEEcCcCCccc
Confidence            99887643322  8899999999999777776666655543    2 23568999999996654

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.53  E-value=4.5e-14  Score=106.87  Aligned_cols=114  Identities=20%  Similarity=0.219  Sum_probs=74.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCc--EEEEEeCCCCCCCCCCCcC--CCceEE
Q 036363           19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQ--VVNVIDTPGLFDFSAGSEF--DEIHAA   94 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~--~~~~~~   94 (240)
                      ..+|+++|++|||||||+++|+|...........+  .......+.+ ++.  .+.+|||||...+......  ..++++
T Consensus         5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~--~~~~~~~i~~-~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~   81 (199)
T 2f9l_A            5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIG--VEFATRSIQV-DGKTIKAQIWDTAGQERYRRITSAYYRGAVGA   81 (199)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCS--CEEEEEEEEE-TTEEEEEEEEECSSGGGTTCCCHHHHTTCSEE
T ss_pred             eEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccc--eeEEEEEEEE-CCEEEEEEEEECCCchhhhhhhHHHHhcCCEE
Confidence            37999999999999999999998764332222222  2222333444 554  5678999998776544333  788999


Q ss_pred             EEEEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363           95 LVVFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDEL  137 (240)
Q Consensus        95 l~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~  137 (240)
                      ++|+++++..+..+. .++..+...  .....++++|+||+|..
T Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~~~i~~v~nK~Dl~  123 (199)
T 2f9l_A           82 LLVYDIAKHLTYENVERWLKELRDH--ADSNIVIMLVGNKSDLR  123 (199)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHH--SCTTCEEEEEEECTTCG
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHh--cCCCCeEEEEEECcccc
Confidence            999999855544432 333334332  12236799999999954

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.52  E-value=1.2e-14  Score=108.70  Aligned_cols=114  Identities=18%  Similarity=0.193  Sum_probs=67.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCC-CccccCCCCCcceeEEEEEEEE----eCCcEEEEEeCCCCCCCCCCCcC--CCce
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRR-AFKSRASSSGVTSTCEMHRTVL----KDGQVVNVIDTPGLFDFSAGSEF--DEIH   92 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~-~~~~~~~~~~~t~~~~~~~~~~----~~~~~~~l~DtpG~~~~~~~~~~--~~~~   92 (240)
                      .+|+++|++|+|||||++++++.. .+.... ...............    .....+.+|||||...+......  .+.+
T Consensus         3 ~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~-~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~   81 (184)
T 2zej_A            3 MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQ-SATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA   81 (184)
T ss_dssp             CEEEEESCTTSSHHHHHHHHTCC------------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCccCCCc-ceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence            689999999999999999999863 222211 111111111111111    02457889999998765544333  6788


Q ss_pred             EEEEEEECCCCC-CHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363           93 AALVVFSVRSRF-SQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDEL  137 (240)
Q Consensus        93 ~~l~v~~~~~~~-~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~  137 (240)
                      ++++|+|++++. +... ..++..+.....   ..|+++|.||+|..
T Consensus        82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~  125 (184)
T 2zej_A           82 LYLAVYDLSKGQAEVDAMKPWLFNIKARAS---SSPVILVGTHLDVS  125 (184)
T ss_dssp             EEEEEEEGGGCHHHHHTHHHHHHHHHHHCT---TCEEEEEEECGGGC
T ss_pred             EEEEEEeCCcchhHHHHHHHHHHHHHhhCC---CCcEEEEEECCCcc
Confidence            999999998543 2222 234444433321   36899999999954

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.52  E-value=1.3e-15  Score=130.76  Aligned_cols=112  Identities=17%  Similarity=0.280  Sum_probs=84.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEEEEE
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAALVV   97 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~v   97 (240)
                      .+|+++|++|+|||||+++|++......  ...+.|.....+...+..+..+.+|||||+.++......  ..+|++++|
T Consensus         5 pkV~IvG~~~vGKTSLl~~L~~~~~~~~--~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vILV   82 (537)
T 3izy_P            5 PVVTIMGHVDHGKTTLLDKLRKTQVAAM--EAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRARGTQVTDIVILV   82 (537)
T ss_dssp             CBCEEEESTTTTHHHHHHHHHHHHHHHS--SSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSBBSSSBSBSSCEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCcccc--cCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHHHHHHHccCCEEEEE
Confidence            7899999999999999999987654322  223444444333333324567899999999988877665  889999999


Q ss_pred             EECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           98 FSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        98 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      ++++++..++....+..+..     ...|+++++||+|...
T Consensus        83 VDa~dg~~~qt~e~l~~~~~-----~~vPiIVViNKiDl~~  118 (537)
T 3izy_P           83 VAADDGVMKQTVESIQHAKD-----AHVPIVLAINKCDKAE  118 (537)
T ss_dssp             CBSSSCCCHHHHHHHHHHHT-----TTCCEEECCBSGGGTT
T ss_pred             EECCCCccHHHHHHHHHHHH-----cCCcEEEEEecccccc
Confidence            99998888888877776653     1246999999999654

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.52  E-value=8e-14  Score=114.86  Aligned_cols=116  Identities=16%  Similarity=0.107  Sum_probs=73.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCc----------CC
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSE----------FD   89 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~----------~~   89 (240)
                      ..|+|+|++|+|||||+|+|+|.....+..  .+.|.......+.+ ++..+.+|||||+........          ..
T Consensus       180 ~~V~lvG~~naGKSTLln~L~~~~~~~~~~--~~~T~d~~~~~i~~-~g~~v~l~DT~G~i~~lp~~lve~f~~tl~~~~  256 (364)
T 2qtf_A          180 PSIGIVGYTNSGKTSLFNSLTGLTQKVDTK--LFTTMSPKRYAIPI-NNRKIMLVDTVGFIRGIPPQIVDAFFVTLSEAK  256 (364)
T ss_dssp             CEEEEECBTTSSHHHHHHHHHCC-------------CCSCEEEEEE-TTEEEEEEECCCBCSSCCGGGHHHHHHHHHGGG
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCCccccCC--cccccCCEEEEEEE-CCEEEEEEeCCCchhcCCHHHHHHHHHHHHHHH
Confidence            459999999999999999999986532222  23444444445556 778899999999855322110          17


Q ss_pred             CceEEEEEEECCCCC--CHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363           90 EIHAALVVFSVRSRF--SQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        90 ~~~~~l~v~~~~~~~--~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~  139 (240)
                      .+|++++|+|+++..  .......+..+...++.. ..|+++|.||+|.+..
T Consensus       257 ~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~-~~p~ilV~NK~Dl~~~  307 (364)
T 2qtf_A          257 YSDALILVIDSTFSENLLIETLQSSFEILREIGVS-GKPILVTLNKIDKING  307 (364)
T ss_dssp             GSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCC-SCCEEEEEECGGGCCS
T ss_pred             hCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcC-CCCEEEEEECCCCCCc
Confidence            789999999998553  222333334444444422 2579999999997644

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.51  E-value=1.5e-14  Score=123.63  Aligned_cols=114  Identities=19%  Similarity=0.269  Sum_probs=77.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCcc-----ccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCc
Q 036363           19 VRTVVLVGHTGNGKSATGNSILGRRAFK-----SRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEI   91 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~-----~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~   91 (240)
                      ..+|+++|+.++|||||+++|++.....     ......+.|....+....+ ++..+.+|||||+.++......  ..+
T Consensus        19 ~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~~~i~iiDtPGh~~~~~~~~~~~~~a   97 (482)
T 1wb1_A           19 NINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKL-ENYRITLVDAPGHADLIRAVVSAADII   97 (482)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEE-TTEEEEECCCSSHHHHHHHHHHHTTSC
T ss_pred             CCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEE-CCEEEEEEECCChHHHHHHHHHHHhhC
Confidence            4899999999999999999999875110     1112234565555555666 7789999999998765322222  889


Q ss_pred             eEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           92 HAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        92 ~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      |++++|+|++++...+..+.+..+.. ++    .|.++++||+|...
T Consensus        98 D~~ilVvda~~g~~~qt~e~l~~~~~-~~----ip~IvviNK~Dl~~  139 (482)
T 1wb1_A           98 DLALIVVDAKEGPKTQTGEHMLILDH-FN----IPIIVVITKSDNAG  139 (482)
T ss_dssp             CEEEEEEETTTCSCHHHHHHHHHHHH-TT----CCBCEEEECTTSSC
T ss_pred             CEEEEEEecCCCccHHHHHHHHHHHH-cC----CCEEEEEECCCccc
Confidence            99999999998787877777765543 22    34699999999664

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=99.51  E-value=5.5e-14  Score=111.32  Aligned_cols=139  Identities=18%  Similarity=0.186  Sum_probs=84.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCC-----Ccce---eEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC---
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSS-----GVTS---TCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF---   88 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~-----~~t~---~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~---   88 (240)
                      .+++|+|+||+|||||+|+|+|...+.++....     ..+.   ...+......-...++++|+||+.........   
T Consensus         3 f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~~   82 (270)
T 3sop_A            3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEP   82 (270)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSHH
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHHH
Confidence            789999999999999999999977655543211     1111   11111111001226789999999764332211   


Q ss_pred             ---------------------------CCceEEEEEEECC-CCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCC
Q 036363           89 ---------------------------DEIHAALVVFSVR-SRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEAN  140 (240)
Q Consensus        89 ---------------------------~~~~~~l~v~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~  140 (240)
                                                 ..+++.+++++.. .+++..+...++.+..    .  .++++|++|+|.+...
T Consensus        83 i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~----~--~~vI~Vi~K~D~lt~~  156 (270)
T 3sop_A           83 IEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSK----V--VNIIPVIAKADTMTLE  156 (270)
T ss_dssp             HHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHT----T--SEEEEEETTGGGSCHH
T ss_pred             HHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHh----c--CcEEEEEeccccCCHH
Confidence                                       3468888888865 7899999888887753    2  5799999999988653


Q ss_pred             cccHHHHhcccCCchHHHHHHHhCCcEEEEe
Q 036363          141 DETLEDYLGRECPKPLKEILHLFDNRCVLFD  171 (240)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (240)
                        .+..+...     ++..+...+..++.|.
T Consensus       157 --e~~~~k~~-----i~~~l~~~~i~i~~~~  180 (270)
T 3sop_A          157 --EKSEFKQR-----VRKELEVNGIEFYPQK  180 (270)
T ss_dssp             --HHHHHHHH-----HHHHHHHTTCCCSSCS
T ss_pred             --HHHHHHHH-----HHHHHHHcCccccCCC
Confidence              44444433     5555666666655443

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.51  E-value=2.1e-14  Score=120.38  Aligned_cols=116  Identities=16%  Similarity=0.224  Sum_probs=81.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCC-------Ccccc--------CCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCC
Q 036363           18 GVRTVVLVGHTGNGKSATGNSILGRR-------AFKSR--------ASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDF   82 (240)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlin~l~g~~-------~~~~~--------~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~   82 (240)
                      ...+|+++|+.|+|||||+++|++..       .+...        ....+.|.......+.+ .+..+.+|||||+.++
T Consensus        10 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~~~~~iiDtpG~~~f   88 (405)
T 2c78_A           10 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYET-AKRHYSHVDCPGHADY   88 (405)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEEC-SSCEEEEEECCCSGGG
T ss_pred             CeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEecc-CCeEEEEEECCChHHH
Confidence            44899999999999999999998731       00000        00134455444444544 6788999999999876


Q ss_pred             CCCCcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           83 SAGSEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        83 ~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      ......  ..+|++++|+|++++...+....+..+.. .+   .+++++++||+|...
T Consensus        89 ~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~-~~---ip~iivviNK~Dl~~  142 (405)
T 2c78_A           89 IKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQ-VG---VPYIVVFMNKVDMVD  142 (405)
T ss_dssp             HHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHH-TT---CCCEEEEEECGGGCC
T ss_pred             HHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHH-cC---CCEEEEEEECccccC
Confidence            432222  78999999999998887777777766543 22   244889999999654

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=99.51  E-value=2.4e-14  Score=127.25  Aligned_cols=117  Identities=27%  Similarity=0.349  Sum_probs=83.0

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhC---CCCccc----c-C--------CCCCcceeEEEEEEEEeCCcEEEEEeCCCCC
Q 036363           17 NGVRTVVLVGHTGNGKSATGNSILG---RRAFKS----R-A--------SSSGVTSTCEMHRTVLKDGQVVNVIDTPGLF   80 (240)
Q Consensus        17 ~~~~~i~lvG~~g~GKSTlin~l~g---~~~~~~----~-~--------~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~   80 (240)
                      ....+|+|+|++|+|||||+|+|++   ......    + .        ...+.|.........+ .+..+++|||||+.
T Consensus         8 ~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~-~~~~i~liDTPG~~   86 (693)
T 2xex_A            8 EKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAW-EGHRVNIIDTPGHV   86 (693)
T ss_dssp             TTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEE-TTEEEEEECCCCCS
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEE-CCeeEEEEECcCCc
Confidence            4568999999999999999999984   211000    0 0        0123444444455666 78899999999998


Q ss_pred             CCCCCCcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363           81 DFSAGSEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        81 ~~~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~  139 (240)
                      ++......  ..+|++++|+|++++.+..+...+..+...     ..|+++|+||+|....
T Consensus        87 df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~-----~~p~ilviNK~Dl~~~  142 (693)
T 2xex_A           87 DFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTY-----GVPRIVFVNKMDKLGA  142 (693)
T ss_dssp             SCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHHT-----TCCEEEEEECTTSTTC
T ss_pred             chHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHHc-----CCCEEEEEECCCcccc
Confidence            87554333  789999999999988888888888776542     2578999999997654

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.50  E-value=5.6e-15  Score=125.85  Aligned_cols=111  Identities=15%  Similarity=0.236  Sum_probs=81.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEEEEE
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAALVV   97 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~v   97 (240)
                      .+|+++|+.++|||||+++|++.......  ..+.|.....+...+ ++..+.+|||||+.+|......  ..+|++++|
T Consensus         5 ~~V~IvGhvd~GKTTLl~~L~~~~v~~~e--~~GIT~~i~~~~v~~-~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aILV   81 (501)
T 1zo1_I            5 PVVTIMGHVDHGKTSLLEYIRSTKVASGE--AGGITQHIGAYHVET-ENGMITFLDTPGHAAFTSMRARGAQATDIVVLV   81 (501)
T ss_dssp             CCEEEEESTTSSSHHHHHHHHHHHHSBTT--BCCCCCCSSCCCCCT-TSSCCCEECCCTTTCCTTSBCSSSBSCSSEEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCcccc--CCCeeEeEEEEEEEE-CCEEEEEEECCCcHHHHHHHHHHHhhCCEEEEE
Confidence            79999999999999999999875432211  133444333334444 6678899999999998776655  889999999


Q ss_pred             EECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           98 FSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        98 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      ++++++...+....+..+.. .    ..|+++++||+|...
T Consensus        82 Vda~~g~~~qT~e~l~~~~~-~----~vPiIVviNKiDl~~  117 (501)
T 1zo1_I           82 VAADDGVMPQTIEAIQHAKA-A----QVPVVVAVNKIDKPE  117 (501)
T ss_dssp             EETTTBSCTTTHHHHHHHHH-T----TCCEEEEEECSSSST
T ss_pred             eecccCccHHHHHHHHHHHh-c----CceEEEEEEeccccc
Confidence            99987666666666655542 1    246999999999754

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.50  E-value=2.5e-14  Score=120.96  Aligned_cols=116  Identities=23%  Similarity=0.326  Sum_probs=73.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCC-Ccccc----------------------------CCCCCcceeEEEEEEEEeCC
Q 036363           18 GVRTVVLVGHTGNGKSATGNSILGRR-AFKSR----------------------------ASSSGVTSTCEMHRTVLKDG   68 (240)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlin~l~g~~-~~~~~----------------------------~~~~~~t~~~~~~~~~~~~~   68 (240)
                      +..+|+++|+.|+|||||+++|++.. .+...                            ....+.|.......+.+ .+
T Consensus         5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~-~~   83 (435)
T 1jny_A            5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFET-KK   83 (435)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEEC-SS
T ss_pred             CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEec-CC
Confidence            34899999999999999999998641 11100                            01234566555555666 77


Q ss_pred             cEEEEEeCCCCCCCCCCCcC--CCceEEEEEEECCCC-------CCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           69 QVVNVIDTPGLFDFSAGSEF--DEIHAALVVFSVRSR-------FSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        69 ~~~~l~DtpG~~~~~~~~~~--~~~~~~l~v~~~~~~-------~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      ..+.+|||||+.++......  ..+|++++|+|++++       +..+....+..+. .++   .+++++++||+|...
T Consensus        84 ~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~-~~~---~~~iivviNK~Dl~~  158 (435)
T 1jny_A           84 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAK-TMG---LDQLIVAVNKMDLTE  158 (435)
T ss_dssp             CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHH-HTT---CTTCEEEEECGGGSS
T ss_pred             eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHH-HcC---CCeEEEEEEcccCCC
Confidence            89999999999887543222  889999999999864       2223334333332 222   256899999999665

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.50  E-value=9.2e-13  Score=105.85  Aligned_cols=116  Identities=14%  Similarity=0.171  Sum_probs=70.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCC--C--CC----------------------ccee---------------
Q 036363           19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRAS--S--SG----------------------VTST---------------   57 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~--~--~~----------------------~t~~---------------   57 (240)
                      ..+|+++|.+|+|||||+|+|+|....+.+..  .  .+                      .|..               
T Consensus        26 ~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i~g  105 (299)
T 2aka_B           26 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG  105 (299)
T ss_dssp             CCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHCS
T ss_pred             CCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHhcc
Confidence            47999999999999999999999875322110  0  00                      0000               


Q ss_pred             --------EEEEEEEEeCCcEEEEEeCCCCCCCCC----CC---cC--------CCceEEE-EEEECCCCCCHHHH-HHH
Q 036363           58 --------CEMHRTVLKDGQVVNVIDTPGLFDFSA----GS---EF--------DEIHAAL-VVFSVRSRFSQEEE-ATL  112 (240)
Q Consensus        58 --------~~~~~~~~~~~~~~~l~DtpG~~~~~~----~~---~~--------~~~~~~l-~v~~~~~~~~~~~~-~~l  112 (240)
                              ........+....+.+|||||+.....    ..   ..        ...+.++ +|++++.+++..+. .++
T Consensus       106 ~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~  185 (299)
T 2aka_B          106 TNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIA  185 (299)
T ss_dssp             STTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHH
T ss_pred             cCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHH
Confidence                    000111111246889999999986431    11   00        4555554 78999866665543 233


Q ss_pred             HHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363          113 HSLQTLFGKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus       113 ~~l~~~~~~~~~~~~i~v~~~~D~~~~  139 (240)
                      ..+    .. ...|+++|+||+|....
T Consensus       186 ~~~----~~-~~~~~i~V~NK~Dl~~~  207 (299)
T 2aka_B          186 KEV----DP-QGQRTIGVITKLDLMDE  207 (299)
T ss_dssp             HHH----CT-TCSSEEEEEECGGGSCT
T ss_pred             HHh----CC-CCCeEEEEEEccccCCC
Confidence            333    22 23679999999997654

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=99.50  E-value=9.4e-14  Score=104.62  Aligned_cols=116  Identities=22%  Similarity=0.176  Sum_probs=70.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCC-ccccCCCCCcceeEEEEEEEEeCCc--EEEEEeCCCCCCC-CCCCcC--CCce
Q 036363           19 VRTVVLVGHTGNGKSATGNSILGRRA-FKSRASSSGVTSTCEMHRTVLKDGQ--VVNVIDTPGLFDF-SAGSEF--DEIH   92 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g~~~-~~~~~~~~~~t~~~~~~~~~~~~~~--~~~l~DtpG~~~~-~~~~~~--~~~~   92 (240)
                      ..+|+++|.+|+|||||+|++++... +.....+.+.+.  ......+ ++.  .+.+|||+|.... ......  ...|
T Consensus         6 ~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~   82 (192)
T 2cjw_A            6 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDT--YERTLMV-DGESATIILLDMWENKGENEWLHDHCMQVGD   82 (192)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTE--EEEEEEE-TTEEEEEEEECCCCC----CTTGGGHHHHCS
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeE--EEEEEEE-CCeEEEEEEEEeccCcchhhhHHHhhcccCC
Confidence            47999999999999999999996322 222211122222  1223344 544  4578999997652 222222  6789


Q ss_pred             EEEEEEECCCCCCHHHHH-HHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           93 AALVVFSVRSRFSQEEEA-TLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        93 ~~l~v~~~~~~~~~~~~~-~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      ++++|++++++.+..... ++..+...... ...|+++|.||+|...
T Consensus        83 ~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~-~~~piilV~NK~Dl~~  128 (192)
T 2cjw_A           83 AYLIVYSITDRASFEKASELRIQLRRARQT-EDIPIILVGNKSDLVR  128 (192)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHTTT-SCCCEEEEEECTTCGG
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhhCC-CCCeEEEEEechhhhc
Confidence            999999998666655433 33444443221 2367999999999543

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.50  E-value=3e-14  Score=119.10  Aligned_cols=115  Identities=17%  Similarity=0.239  Sum_probs=80.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCC------ccc--------cCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCC
Q 036363           19 VRTVVLVGHTGNGKSATGNSILGRRA------FKS--------RASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSA   84 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g~~~------~~~--------~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~   84 (240)
                      ..+|+++|+.++|||||+++|++...      +..        .....+.|.......+.. .+..+.+|||||+.++..
T Consensus         3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~-~~~~~~iiDtpG~~~f~~   81 (397)
T 1d2e_A            3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYST-AARHYAHTDCPGHADYVK   81 (397)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEEC-SSCEEEEEECSSHHHHHH
T ss_pred             eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEecc-CCeEEEEEECCChHHHHH
Confidence            47999999999999999999987411      000        001234455554444444 668899999999987633


Q ss_pred             CCcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           85 GSEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        85 ~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      ....  ..+|++++|+|++++...+....+..+.. .+   .+++++++||+|...
T Consensus        82 ~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~-~~---vp~iivviNK~Dl~~  133 (397)
T 1d2e_A           82 NMITGTAPLDGCILVVAANDGPMPQTREHLLLARQ-IG---VEHVVVYVNKADAVQ  133 (397)
T ss_dssp             HHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHH-TT---CCCEEEEEECGGGCS
T ss_pred             HHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHH-cC---CCeEEEEEECcccCC
Confidence            2211  78999999999998888887777755543 22   244789999999654

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=99.50  E-value=2.9e-14  Score=126.70  Aligned_cols=119  Identities=24%  Similarity=0.301  Sum_probs=82.8

Q ss_pred             CCCCceEEEEEcCCCCcHHHHHHHHhC---CCCccc----cC---------CCCCcceeEEEEEEEEeCCcEEEEEeCCC
Q 036363           15 PSNGVRTVVLVGHTGNGKSATGNSILG---RRAFKS----RA---------SSSGVTSTCEMHRTVLKDGQVVNVIDTPG   78 (240)
Q Consensus        15 ~~~~~~~i~lvG~~g~GKSTlin~l~g---~~~~~~----~~---------~~~~~t~~~~~~~~~~~~~~~~~l~DtpG   78 (240)
                      +.....+|+|+|+.|+|||||+++|+.   ......    +.         ...+.|.........+ .+..+++|||||
T Consensus         8 ~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~-~~~~i~liDTPG   86 (691)
T 1dar_A            8 DLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFW-KDHRINIIDTPG   86 (691)
T ss_dssp             CGGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEE-TTEEEEEECCCS
T ss_pred             ccccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEE-CCeEEEEEECcC
Confidence            334568999999999999999999983   210000    00         0124455455555666 788999999999


Q ss_pred             CCCCCCCCcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363           79 LFDFSAGSEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        79 ~~~~~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~  139 (240)
                      +.++......  ..+|++++|+|++++.+......|..+...     ..|+++|+||+|....
T Consensus        87 ~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~-----~~p~ivviNKiD~~~~  144 (691)
T 1dar_A           87 HVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKY-----KVPRIAFANKMDKTGA  144 (691)
T ss_dssp             STTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHT-----TCCEEEEEECTTSTTC
T ss_pred             ccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHHc-----CCCEEEEEECCCcccC
Confidence            9886544333  789999999999988888888887776542     2568999999997654

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=99.24  E-value=2.1e-15  Score=114.67  Aligned_cols=116  Identities=16%  Similarity=0.058  Sum_probs=75.8

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEe-CCcEEEEEeCCCCCCCCCCCcC--CCceE
Q 036363           17 NGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLK-DGQVVNVIDTPGLFDFSAGSEF--DEIHA   93 (240)
Q Consensus        17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~--~~~~~   93 (240)
                      ....+|+++|++|+|||||++++++...........+...   ....... ....+.+|||||...+......  ..+|+
T Consensus        28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~---~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~  104 (204)
T 3th5_A           28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY---SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDV  104 (204)
Confidence            3458999999999999999999997654322211111111   1111220 2335669999999877655544  78999


Q ss_pred             EEEEEECCCCCCHHHH--HHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           94 ALVVFSVRSRFSQEEE--ATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        94 ~l~v~~~~~~~~~~~~--~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      +++|+|++++.+..+.  .++..+....+   ..|+++|+||+|...
T Consensus       105 iilv~D~~~~~s~~~~~~~~~~~l~~~~~---~~piilv~NK~Dl~~  148 (204)
T 3th5_A          105 FLICFSLVSPASFENVRAKWYPEVRHHCP---NTPIILVGTKLDLRD  148 (204)
Confidence            9999999866555543  34444443322   367999999999654

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.49  E-value=1.5e-13  Score=103.41  Aligned_cols=114  Identities=21%  Similarity=0.241  Sum_probs=74.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcE--EEEEeCCCCCCCCCCCcC--CCceEE
Q 036363           19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQV--VNVIDTPGLFDFSAGSEF--DEIHAA   94 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~--~~l~DtpG~~~~~~~~~~--~~~~~~   94 (240)
                      ..+|+|+|++|||||||+++|+|..........  .+.......+.+ ++..  +.+|||||...+......  ..++++
T Consensus        29 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t--~~~~~~~~~i~~-~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~  105 (191)
T 1oix_A           29 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKST--IGVEFATRSIQV-DGKTIKAQIWDTAGLERYRAITSAYYRGAVGA  105 (191)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCC--CSEEEEEEEEEE-TTEEEEEEEEEECSCCSSSCCCHHHHTTCCEE
T ss_pred             ceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCc--cceEEEEEEEEE-CCEEEEEEEEECCCCcchhhhhHHHhhcCCEE
Confidence            379999999999999999999987654332222  222223334444 5544  457999998876554443  678899


Q ss_pred             EEEEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363           95 LVVFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDEL  137 (240)
Q Consensus        95 l~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~  137 (240)
                      ++|+|..+..+.... .++..+...  .....++++++||+|..
T Consensus       106 i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~~~i~~v~nK~Dl~  147 (191)
T 1oix_A          106 LLVYDIAKHLTYENVERWLKELRDH--ADSNIVIMLVGNKSDLR  147 (191)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHH--SCTTCEEEEEEECGGGG
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHh--cCCCCcEEEEEECcccc
Confidence            999998754443332 233333332  12236799999999953

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.49  E-value=1.6e-13  Score=115.10  Aligned_cols=119  Identities=18%  Similarity=0.301  Sum_probs=77.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCCcc-ccCCCCCcceeEEEEEEEEe--------------C--------CcEEEE
Q 036363           17 NGVRTVVLVGHTGNGKSATGNSILGRRAFK-SRASSSGVTSTCEMHRTVLK--------------D--------GQVVNV   73 (240)
Q Consensus        17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~-~~~~~~~~t~~~~~~~~~~~--------------~--------~~~~~l   73 (240)
                      ....+|+++|+.++|||||+++|+|..... ......+.|....+....+.              .        ...+.+
T Consensus         6 ~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i   85 (408)
T 1s0u_A            6 QAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSF   85 (408)
T ss_dssp             CCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEE
T ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEE
Confidence            345899999999999999999999764211 11112344554443322210              0        157899


Q ss_pred             EeCCCCCCCCCCCcC--CCceEEEEEEECCCCC-CHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363           74 IDTPGLFDFSAGSEF--DEIHAALVVFSVRSRF-SQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        74 ~DtpG~~~~~~~~~~--~~~~~~l~v~~~~~~~-~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~  139 (240)
                      |||||+.++......  ..+|++++|+|++++. ..+..+.+..+. .++   .+|+++++||+|....
T Consensus        86 iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~-~l~---~~~iivv~NK~Dl~~~  150 (408)
T 1s0u_A           86 VDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALE-ILG---IDKIIIVQNKIDLVDE  150 (408)
T ss_dssp             EECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHH-HTT---CCCEEEEEECTTSSCT
T ss_pred             EECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHH-HcC---CCeEEEEEEccCCCCH
Confidence            999998765432221  6789999999999765 566666665443 333   2579999999997654

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.49  E-value=8.4e-14  Score=106.79  Aligned_cols=116  Identities=11%  Similarity=0.096  Sum_probs=73.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--C----Cc
Q 036363           18 GVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--D----EI   91 (240)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~----~~   91 (240)
                      ...+|+++|++|+|||||+++|++........ ....+...     .+ ....+.+|||||+..+......  .    .+
T Consensus        11 ~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~-~~~~~~~~-----~~-~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~   83 (218)
T 1nrj_B           11 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVV-SQEPLSAA-----DY-DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFV   83 (218)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHSSCCCBCC-CSSCEEET-----TG-GGSSCEEEECCCCGGGTHHHHHHHHHHGGGE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCCeee-ecCceEEE-----Ee-eCceEEEEECCCcHHHHHHHHHHHHhccccC
Confidence            45899999999999999999999876422111 11111111     11 3457889999999776433222  2    38


Q ss_pred             eEEEEEEECC-CCCCHHH-HHHHHHHHHHhC--CCcCCeEEEEEeCCCCCCCC
Q 036363           92 HAALVVFSVR-SRFSQEE-EATLHSLQTLFG--KNCFDYMIVVFSGRDELEAN  140 (240)
Q Consensus        92 ~~~l~v~~~~-~~~~~~~-~~~l~~l~~~~~--~~~~~~~i~v~~~~D~~~~~  140 (240)
                      |++++|+|++ +..+... ...+..+.....  .....|+++|+||+|.....
T Consensus        84 ~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~  136 (218)
T 1nrj_B           84 KGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTAR  136 (218)
T ss_dssp             EEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred             CEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccC
Confidence            9999999998 4444332 334444433211  11236799999999976543

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=99.48  E-value=1.2e-13  Score=113.73  Aligned_cols=124  Identities=14%  Similarity=0.150  Sum_probs=86.9

Q ss_pred             CccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC
Q 036363            9 DCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF   88 (240)
Q Consensus         9 ~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~   88 (240)
                      +..|.+......+|+|||.+++|||||+|+|+|.....+.  ..++|..+......+ .+..+.++||||+.........
T Consensus        62 ~~~f~v~k~g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~--~pftT~~~~~g~~~~-~~~~i~l~D~pGl~~~a~~~~~  138 (376)
T 4a9a_A           62 GIGFDVARTGVASVGFVGFPSVGKSTLLSKLTGTESEAAE--YEFTTLVTVPGVIRY-KGAKIQMLDLPGIIDGAKDGRG  138 (376)
T ss_dssp             SBTTTBCBCSSEEEEEECCCCHHHHHHHHHHHSBCCCGGG--TCSSCCCEEEEEEEE-TTEEEEEEECGGGCCC-----C
T ss_pred             CCCceEeecCCCeEEEECCCCCCHHHHHHHHhCCCCcccC--CCCceeeeeeEEEEe-CCcEEEEEeCCCccCCchhhhH
Confidence            3456666666689999999999999999999997643332  256777777777777 8899999999999865443322


Q ss_pred             ---------CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCC-cCCeEEEEEeCCCCC
Q 036363           89 ---------DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKN-CFDYMIVVFSGRDEL  137 (240)
Q Consensus        89 ---------~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~-~~~~~i~v~~~~D~~  137 (240)
                               +.+|++++|+|++++.  .+...+..-...++.. ..+|.++++||.|.-
T Consensus       139 ~g~~~l~~i~~ad~il~vvD~~~p~--~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~  195 (376)
T 4a9a_A          139 RGKQVIAVARTCNLLFIILDVNKPL--HHKQIIEKELEGVGIRLNKTPPDILIKKKEKG  195 (376)
T ss_dssp             HHHHHHHHHHHCSEEEEEEETTSHH--HHHHHHHHHHHHTTEEETCCCCCEEEEECSSS
T ss_pred             HHHHHHHHHHhcCccccccccCccH--HHHHHHHHHHHHhhHhhccCChhhhhhHhhhh
Confidence                     7899999999998533  3334444333444321 235678899999953

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=99.48  E-value=5.9e-14  Score=107.28  Aligned_cols=117  Identities=22%  Similarity=0.187  Sum_probs=71.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCC-ccccCCCCCcceeEEEEEEEEeCCc--EEEEEeCCCCCCC-CCCCc--CCCc
Q 036363           18 GVRTVVLVGHTGNGKSATGNSILGRRA-FKSRASSSGVTSTCEMHRTVLKDGQ--VVNVIDTPGLFDF-SAGSE--FDEI   91 (240)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlin~l~g~~~-~~~~~~~~~~t~~~~~~~~~~~~~~--~~~l~DtpG~~~~-~~~~~--~~~~   91 (240)
                      ...+|+|+|.+|+|||||+|++++... +.....+.+.+.  ......+ ++.  .+.+|||+|.... .....  ....
T Consensus        36 ~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~--~~~~i~~-~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a  112 (211)
T 2g3y_A           36 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDT--YERTLMV-DGESATIILLDMWENKGENEWLHDHCMQVG  112 (211)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTE--EEEEEEE-TTEEEEEEEECCTTTTHHHHHHHHCCCCCC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceee--EEEEEEE-CCeeeEEEEeecCCCcchhhhHHHHHHhhC
Confidence            347999999999999999999997532 222222222222  1223334 444  4578999997652 11111  1678


Q ss_pred             eEEEEEEECCCCCCHHHHH-HHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           92 HAALVVFSVRSRFSQEEEA-TLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        92 ~~~l~v~~~~~~~~~~~~~-~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      +++++|++++++.+..... ++..+.... .....|+++|+||+|...
T Consensus       113 ~~~ilVydvt~~~sf~~~~~~~~~l~~~~-~~~~~piilVgNK~DL~~  159 (211)
T 2g3y_A          113 DAYLIVYSITDRASFEKASELRIQLRRAR-QTEDIPIILVGNKSDLVR  159 (211)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHHTSG-GGTTSCEEEEEECTTCGG
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHHh-CCCCCcEEEEEEChHHhc
Confidence            9999999998665555433 333333211 112367999999999543

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=99.47  E-value=1.1e-13  Score=120.55  Aligned_cols=112  Identities=19%  Similarity=0.267  Sum_probs=79.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEe-----------------CCcEEEEEeCCCCCCC
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLK-----------------DGQVVNVIDTPGLFDF   82 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-----------------~~~~~~l~DtpG~~~~   82 (240)
                      .+|+++|++|+|||||+++|++......  ...+.|.........+.                 ....+++|||||+.+|
T Consensus         6 ~~V~IvGh~d~GKTTLl~~L~~~~v~~~--e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F   83 (594)
T 1g7s_A            6 PIVSVLGHVDHGKTTLLDHIRGSAVASR--EAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF   83 (594)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHSCC------CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred             cEEEEECCCCCcHHHHHHHHhcccCccc--cCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence            7999999999999999999987543211  11122222211222110                 1125899999999999


Q ss_pred             CCCCcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           83 SAGSEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        83 ~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      ......  ..+|++++|+|++++...+....+..+..     ...|+++++||+|...
T Consensus        84 ~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~-----~~vPiIVViNKiDl~~  136 (594)
T 1g7s_A           84 TTLRKRGGALADLAILIVDINEGFKPQTQEALNILRM-----YRTPFVVAANKIDRIH  136 (594)
T ss_dssp             TTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHH-----TTCCEEEEEECGGGST
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHHHHH-----cCCeEEEEeccccccc
Confidence            776655  78999999999998888888888776653     1257999999999753

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.47  E-value=1.6e-14  Score=122.78  Aligned_cols=115  Identities=20%  Similarity=0.259  Sum_probs=75.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCC-Cccc-------------cC---------------CCCCcceeEEEEEEEEeCCc
Q 036363           19 VRTVVLVGHTGNGKSATGNSILGRR-AFKS-------------RA---------------SSSGVTSTCEMHRTVLKDGQ   69 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g~~-~~~~-------------~~---------------~~~~~t~~~~~~~~~~~~~~   69 (240)
                      ..+|+++|+.++|||||+++|++.. .+..             +.               ...+.|....+..+.. .+.
T Consensus         7 ~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~-~~~   85 (458)
T 1f60_A            7 HINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFET-PKY   85 (458)
T ss_dssp             EEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEEC-SSE
T ss_pred             eeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEec-CCc
Confidence            4899999999999999999998641 1100             00               0134555555455555 677


Q ss_pred             EEEEEeCCCCCCCCCCCcC--CCceEEEEEEECCCCCCH-------HHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           70 VVNVIDTPGLFDFSAGSEF--DEIHAALVVFSVRSRFSQ-------EEEATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        70 ~~~l~DtpG~~~~~~~~~~--~~~~~~l~v~~~~~~~~~-------~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      .+.+|||||+.++......  ..+|++++|+|++++...       +....+..+. ..+   .+++++++||+|...
T Consensus        86 ~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~-~~~---v~~iivviNK~Dl~~  159 (458)
T 1f60_A           86 QVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAF-TLG---VRQLIVAVNKMDSVK  159 (458)
T ss_dssp             EEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHH-HTT---CCEEEEEEECGGGGT
T ss_pred             eEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHH-HcC---CCeEEEEEEcccccc
Confidence            8999999998866432222  889999999999854322       3333333332 222   356999999999663

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=99.47  E-value=3.9e-12  Score=112.87  Aligned_cols=116  Identities=16%  Similarity=0.194  Sum_probs=76.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCC----------------------------------------------
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSG----------------------------------------------   53 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~----------------------------------------------   53 (240)
                      .+|+++|..++|||||+|+|+|....+.+.....                                              
T Consensus        52 p~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~g~  131 (772)
T 3zvr_A           52 PQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGT  131 (772)
T ss_dssp             SEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHHCS
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhcCC
Confidence            6999999999999999999999876433321110                                              


Q ss_pred             ---cceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCC--c----C----------CCceEEEEEEECCCCCCHHHH-HHHH
Q 036363           54 ---VTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGS--E----F----------DEIHAALVVFSVRSRFSQEEE-ATLH  113 (240)
Q Consensus        54 ---~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~--~----~----------~~~~~~l~v~~~~~~~~~~~~-~~l~  113 (240)
                         .+.......+..+....+.++||||+.......  .    .          ..+|++++|+|++..+...+. ..+.
T Consensus       132 ~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~  211 (772)
T 3zvr_A          132 NKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAK  211 (772)
T ss_dssp             TTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHH
T ss_pred             CCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHH
Confidence               000111112222234468899999998743211  0    0          678999999999877766664 4554


Q ss_pred             HHHHHhCCCcCCeEEEEEeCCCCCCCC
Q 036363          114 SLQTLFGKNCFDYMIVVFSGRDELEAN  140 (240)
Q Consensus       114 ~l~~~~~~~~~~~~i~v~~~~D~~~~~  140 (240)
                      .+.     ....|+++|+||+|.+.+.
T Consensus       212 ~L~-----~~g~pvIlVlNKiDlv~~~  233 (772)
T 3zvr_A          212 EVD-----PQGQRTIGVITKLDLMDEG  233 (772)
T ss_dssp             HHC-----TTCSSEEEEEECTTSSCTT
T ss_pred             HHH-----hcCCCEEEEEeCcccCCcc
Confidence            442     2346799999999987653

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.47  E-value=1.4e-14  Score=126.54  Aligned_cols=117  Identities=21%  Similarity=0.271  Sum_probs=62.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCCccc-----------------------------cCCCCCcceeEEEEEEEEeC
Q 036363           17 NGVRTVVLVGHTGNGKSATGNSILGRRAFKS-----------------------------RASSSGVTSTCEMHRTVLKD   67 (240)
Q Consensus        17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~-----------------------------~~~~~~~t~~~~~~~~~~~~   67 (240)
                      ....+|+++|+.++|||||+++|++......                             .....++|.......+.+ .
T Consensus       175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~-~  253 (592)
T 3mca_A          175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFES-D  253 (592)
T ss_dssp             CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEe-C
Confidence            3557999999999999999999964211000                             001235566666555655 6


Q ss_pred             CcEEEEEeCCCCCCCCCCCcC--CCceEEEEEEECCCC-----C--CHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           68 GQVVNVIDTPGLFDFSAGSEF--DEIHAALVVFSVRSR-----F--SQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        68 ~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~v~~~~~~-----~--~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      +..+.+|||||+.++......  ..+|++|+|+|++.+     +  ..+....+..+.. ++   .+++|+|+||+|...
T Consensus       254 ~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~-lg---ip~iIvviNKiDl~~  329 (592)
T 3mca_A          254 KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA-LG---ISEIVVSVNKLDLMS  329 (592)
T ss_dssp             -----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH-SS---CCCEEEEEECGGGGT
T ss_pred             CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH-cC---CCeEEEEEecccccc
Confidence            778999999999887554433  889999999999853     2  4455555544432 22   255899999999665

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=99.47  E-value=2.2e-13  Score=121.26  Aligned_cols=117  Identities=22%  Similarity=0.296  Sum_probs=83.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCC-cc-ccC--------------CCCCcceeEEEEEEEEeCC-------cEEEE
Q 036363           17 NGVRTVVLVGHTGNGKSATGNSILGRRA-FK-SRA--------------SSSGVTSTCEMHRTVLKDG-------QVVNV   73 (240)
Q Consensus        17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~-~~-~~~--------------~~~~~t~~~~~~~~~~~~~-------~~~~l   73 (240)
                      ...++|+|+|+.|+|||||+++|+.... +. .+.              ...+.|.........| .+       ..+++
T Consensus         8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~-~~~~~~~~~~~i~l   86 (704)
T 2rdo_7            8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFW-SGMAKQYEPHRINI   86 (704)
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEE-CCccccCCceeEEE
Confidence            3458999999999999999999974321 00 000              0134455555555566 55       78999


Q ss_pred             EeCCCCCCCCCCCcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363           74 IDTPGLFDFSAGSEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        74 ~DtpG~~~~~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~  139 (240)
                      |||||+.+|......  ..+|++++|+|++++........+..+...     ..|+++++||+|....
T Consensus        87 iDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~-----~ip~ilviNKiD~~~~  149 (704)
T 2rdo_7           87 IDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKY-----KVPRIAFVNKMDRMGA  149 (704)
T ss_pred             EeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHc-----CCCEEEEEeCCCcccc
Confidence            999999987654444  889999999999988877777777665421     2568899999996654

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.47  E-value=7.2e-14  Score=117.30  Aligned_cols=119  Identities=18%  Similarity=0.277  Sum_probs=79.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCCcc-ccCCCCCcceeEEEEEEEEeC----------------------CcEEEE
Q 036363           17 NGVRTVVLVGHTGNGKSATGNSILGRRAFK-SRASSSGVTSTCEMHRTVLKD----------------------GQVVNV   73 (240)
Q Consensus        17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~-~~~~~~~~t~~~~~~~~~~~~----------------------~~~~~l   73 (240)
                      .+..+|+++|+.++|||||+++|+|..... ......+.|....+....+..                      ...+.+
T Consensus         8 ~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i   87 (410)
T 1kk1_A            8 QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSF   87 (410)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEE
Confidence            345899999999999999999999764211 111123445544443332210                      157899


Q ss_pred             EeCCCCCCCCCCCcC--CCceEEEEEEECCCCC-CHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363           74 IDTPGLFDFSAGSEF--DEIHAALVVFSVRSRF-SQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        74 ~DtpG~~~~~~~~~~--~~~~~~l~v~~~~~~~-~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~  139 (240)
                      |||||+.++......  ..+|++++|+|++++. ..+..+.+..+. .++.   +++++++||+|....
T Consensus        88 iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~-~~~~---~~iivviNK~Dl~~~  152 (410)
T 1kk1_A           88 IDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQ-IIGQ---KNIIIAQNKIELVDK  152 (410)
T ss_dssp             EECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHH-HHTC---CCEEEEEECGGGSCH
T ss_pred             EECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHH-HcCC---CcEEEEEECccCCCH
Confidence            999998765432211  6779999999999765 566666665543 3332   578999999996643

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.47  E-value=2.3e-13  Score=113.94  Aligned_cols=117  Identities=19%  Similarity=0.240  Sum_probs=73.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccc-cCC------------CCCccee-----EEEEEEEEeCCcEEEEEeCCCC
Q 036363           18 GVRTVVLVGHTGNGKSATGNSILGRRAFKS-RAS------------SSGVTST-----CEMHRTVLKDGQVVNVIDTPGL   79 (240)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~-~~~------------~~~~t~~-----~~~~~~~~~~~~~~~l~DtpG~   79 (240)
                      +..+|+++|++|+|||||+|+|++...... +..            ....+..     +....... ....+.+|||||+
T Consensus         7 ~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~iiDtPGh   85 (403)
T 3sjy_A            7 PEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPK-FLRRISFIDAPGH   85 (403)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCE-EEEEEEEEECCCC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceeccccccccccccccc-ccceEEEEECCCc
Confidence            448999999999999999999998532110 000            0000000     00000000 1257889999998


Q ss_pred             CCCCCCCcC--CCceEEEEEEECCCCC-CHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363           80 FDFSAGSEF--DEIHAALVVFSVRSRF-SQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        80 ~~~~~~~~~--~~~~~~l~v~~~~~~~-~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~  139 (240)
                      .++......  ..+|++++|+|++++. ..+....+..+. .++.   +|+++|+||+|....
T Consensus        86 ~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~-~~~~---~~iivviNK~Dl~~~  144 (403)
T 3sjy_A           86 EVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALG-IIGV---KNLIIVQNKVDVVSK  144 (403)
T ss_dssp             GGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHH-HHTC---CCEEEEEECGGGSCH
T ss_pred             HHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHH-HcCC---CCEEEEEECccccch
Confidence            765443332  8899999999999776 555556655443 3332   579999999996643

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.47  E-value=5.5e-14  Score=114.79  Aligned_cols=116  Identities=18%  Similarity=0.100  Sum_probs=75.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC---------CCc
Q 036363           21 TVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF---------DEI   91 (240)
Q Consensus        21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~---------~~~   91 (240)
                      .|+|+|.+|||||||+|+|++..+..+..  ..+|.......+.+.+...+.+|||||+.........         ..+
T Consensus       160 ~V~lvG~~nvGKSTLln~L~~~~~~i~~~--~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~  237 (342)
T 1lnz_A          160 DVGLVGFPSVGKSTLLSVVSSAKPKIADY--HFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERT  237 (342)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEECCEESST--TSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred             eeeeeCCCCCCHHHHHHHHHcCCCccccC--CccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHHHhc
Confidence            68999999999999999999875432222  2334444444455523478999999997543222211         458


Q ss_pred             eEEEEEEECCC---CCCHHHHH-HHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           92 HAALVVFSVRS---RFSQEEEA-TLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        92 ~~~l~v~~~~~---~~~~~~~~-~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      +++++|+|+++   +.+..+.. ++..+..........|+++|+||+|...
T Consensus       238 d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~  288 (342)
T 1lnz_A          238 RVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPE  288 (342)
T ss_dssp             CEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTT
T ss_pred             cEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCC
Confidence            99999999985   44444433 3344443211123467999999999653

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.46  E-value=7.2e-14  Score=115.43  Aligned_cols=101  Identities=13%  Similarity=0.216  Sum_probs=75.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEEEEE
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAALVV   97 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~v   97 (240)
                      .+|+++|+.++|||||+++|+          ..+.|....+..+.+ .+..+.+|||||+.++......  ..+|++++|
T Consensus        22 ~~i~iiG~~d~GKSTL~~~L~----------~~giTi~~~~~~~~~-~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailV   90 (370)
T 2elf_A           22 ANVAIIGTEKSGRTSLAANLG----------KKGTSSDITMYNNDK-EGRNMVFVDAHSYPKTLKSLITALNISDIAVLC   90 (370)
T ss_dssp             EEEEEEESTTSSHHHHHHTTS----------EEEEESSSEEEEECS-SSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHH----------hCCEEEEeeEEEEec-CCeEEEEEECCChHHHHHHHHHHHHHCCEEEEE
Confidence            489999999999999999998          134455555555666 6778999999999887433222  789999999


Q ss_pred             EECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEe-CCCC
Q 036363           98 FSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFS-GRDE  136 (240)
Q Consensus        98 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~-~~D~  136 (240)
                      +| ......+..+.+..+.. ++   .+.+++++| |+|.
T Consensus        91 vd-~~g~~~qt~e~~~~~~~-~~---i~~~ivvvNNK~Dl  125 (370)
T 2elf_A           91 IP-PQGLDAHTGECIIALDL-LG---FKHGIIALTRSDST  125 (370)
T ss_dssp             EC-TTCCCHHHHHHHHHHHH-TT---CCEEEEEECCGGGS
T ss_pred             Ec-CCCCcHHHHHHHHHHHH-cC---CCeEEEEEEeccCC
Confidence            99 76777777666665543 22   244488888 9996

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.44  E-value=5.2e-13  Score=108.70  Aligned_cols=112  Identities=19%  Similarity=0.111  Sum_probs=76.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcE--EEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQV--VNVIDTPGLFDFSAGSEF--DEIHAAL   95 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~--~~l~DtpG~~~~~~~~~~--~~~~~~l   95 (240)
                      .+|+++|.+|+|||||++.+++........   +++.......... ++..  +.+|||||...+......  ..+|+++
T Consensus       156 ~~i~i~G~~~~GKssli~~~~~~~~~~~~~---~t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i  231 (332)
T 2wkq_A          156 IKCVVVGDGAVGKTCLLISYTTNAFPGEYI---PTVFDNYSANVMV-DGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL  231 (332)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSCCCCSCC---CCSEEEEEEEEEE-TTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEE
T ss_pred             eEEEEECCCCCChHHHHHHHHhCCCCcccC---CcccceeEEEEEE-CCEEEEEEEEeCCCchhhhHHHHHhccCCCEEE
Confidence            899999999999999999999765432221   1122211222333 4444  459999999877655544  8899999


Q ss_pred             EEEECCCCCCHHHH--HHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           96 VVFSVRSRFSQEEE--ATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        96 ~v~~~~~~~~~~~~--~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      +|+|++++.+..+.  .++..+....+   ..|+++|+||+|...
T Consensus       232 ~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~  273 (332)
T 2wkq_A          232 ICFSLVSPASFHHVRAKWYPEVRHHCP---NTPIILVGTKLDLRD  273 (332)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHCT---TSCEEEEEECHHHHT
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhhCC---CCcEEEEEEchhccc
Confidence            99999866555553  34445544332   368999999999544

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=99.43  E-value=1.6e-13  Score=121.58  Aligned_cols=117  Identities=25%  Similarity=0.267  Sum_probs=85.0

Q ss_pred             cCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCc--cccCC--------------CCCcceeEEEEEEEEeCCcEEEEEeC
Q 036363           13 TSPSNGVRTVVLVGHTGNGKSATGNSILGRRAF--KSRAS--------------SSGVTSTCEMHRTVLKDGQVVNVIDT   76 (240)
Q Consensus        13 ~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~--~~~~~--------------~~~~t~~~~~~~~~~~~~~~~~l~Dt   76 (240)
                      .+..+  .+|+|+|++|+|||||+++|++....  ..+..              ..+.+.........+ .+..+++|||
T Consensus         5 ~~~~~--~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~-~~~~~nliDT   81 (665)
T 2dy1_A            5 GGAMI--RTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLF-RGHRVFLLDA   81 (665)
T ss_dssp             -CCCE--EEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEE-TTEEEEEEEC
T ss_pred             ccCCC--cEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEee-CCEEEEEEeC
Confidence            34555  89999999999999999999854321  11100              123455555555666 7888999999


Q ss_pred             CCCCCCCCCCcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363           77 PGLFDFSAGSEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDEL  137 (240)
Q Consensus        77 pG~~~~~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~  137 (240)
                      ||+.++......  ..+|++++|+|++.+........+..+...     ..|+++++||+|..
T Consensus        82 pG~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~-----~ip~ilv~NKiD~~  139 (665)
T 2dy1_A           82 PGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERL-----GLPRMVVVTKLDKG  139 (665)
T ss_dssp             CCSGGGHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHT-----TCCEEEEEECGGGC
T ss_pred             CCccchHHHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHHc-----cCCEEEEecCCchh
Confidence            999886533222  788999999999988888888887777542     25688999999966

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=99.43  E-value=4.2e-13  Score=116.25  Aligned_cols=114  Identities=20%  Similarity=0.318  Sum_probs=72.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCc--cccCCCCCcceeE-EEE---------------------------------
Q 036363           18 GVRTVVLVGHTGNGKSATGNSILGRRAF--KSRASSSGVTSTC-EMH---------------------------------   61 (240)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~--~~~~~~~~~t~~~-~~~---------------------------------   61 (240)
                      ...+|+|+|.+|+|||||+|+|+|....  ..+.  ...|... ...                                 
T Consensus        64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~--~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~  141 (550)
T 2qpt_A           64 GKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGP--EPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLN  141 (550)
T ss_dssp             SCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCS--SCCCCSEEEEECCSSSEEECCC------------------CCCT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCccccCccCC--CCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccc
Confidence            3489999999999999999999998653  1111  1111110 000                                 


Q ss_pred             ---EEEEeCC---cEEEEEeCCCCCCCCCC--Cc-----C------CCceEEEEEEECCC-CCCHHHHHHHHHHHHHhCC
Q 036363           62 ---RTVLKDG---QVVNVIDTPGLFDFSAG--SE-----F------DEIHAALVVFSVRS-RFSQEEEATLHSLQTLFGK  121 (240)
Q Consensus        62 ---~~~~~~~---~~~~l~DtpG~~~~~~~--~~-----~------~~~~~~l~v~~~~~-~~~~~~~~~l~~l~~~~~~  121 (240)
                         .+.+ .+   ..+.+|||||+.+....  ..     .      ..+|++++|+|++. .....+..++..+.     
T Consensus       142 ~~~~~~~-~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~-----  215 (550)
T 2qpt_A          142 RFMCAQL-PNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALR-----  215 (550)
T ss_dssp             TEEEEEC-CCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTT-----
T ss_pred             cceEEec-cccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHH-----
Confidence               0001 00   35889999999863211  00     0      67899999999985 36666666665553     


Q ss_pred             CcCCeEEEEEeCCCCCCC
Q 036363          122 NCFDYMIVVFSGRDELEA  139 (240)
Q Consensus       122 ~~~~~~i~v~~~~D~~~~  139 (240)
                      ....++++|+||+|.+..
T Consensus       216 ~~~~pvilVlNK~Dl~~~  233 (550)
T 2qpt_A          216 GHEDKIRVVLNKADMVET  233 (550)
T ss_dssp             TCGGGEEEEEECGGGSCH
T ss_pred             hcCCCEEEEEECCCccCH
Confidence            223579999999997754

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.43  E-value=1.1e-13  Score=120.63  Aligned_cols=116  Identities=22%  Similarity=0.222  Sum_probs=74.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCcccc-------------CCCCCcceeEEEEEEEEeC----CcEEEEEeCCCCCC
Q 036363           19 VRTVVLVGHTGNGKSATGNSILGRRAFKSR-------------ASSSGVTSTCEMHRTVLKD----GQVVNVIDTPGLFD   81 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~-------------~~~~~~t~~~~~~~~~~~~----~~~~~l~DtpG~~~   81 (240)
                      .++|+++|+.|+|||||+++|+........             ....+.|.........|..    +..+++|||||+.+
T Consensus         4 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~d   83 (599)
T 3cb4_D            4 IRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVD   83 (599)
T ss_dssp             EEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGG
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchH
Confidence            589999999999999999999753211000             0113445544444555521    25789999999988


Q ss_pred             CCCCCcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363           82 FSAGSEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        82 ~~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~  139 (240)
                      +......  ..+|++++|+|++++.+.+....|..+...     ..|+++|+||+|....
T Consensus        84 F~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~-----~ipiIvViNKiDl~~a  138 (599)
T 3cb4_D           84 FSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEM-----DLEVVPVLNKIDLPAA  138 (599)
T ss_dssp             GHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHT-----TCEEEEEEECTTSTTC
T ss_pred             HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHC-----CCCEEEeeeccCcccc
Confidence            7554333  788999999999988888877777665431     2579999999996543

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=99.43  E-value=1.3e-13  Score=119.81  Aligned_cols=117  Identities=23%  Similarity=0.290  Sum_probs=76.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCc-cc-c-----------CCCCCcceeEEEEEEEEe--C--CcEEEEEeCCCCC
Q 036363           18 GVRTVVLVGHTGNGKSATGNSILGRRAF-KS-R-----------ASSSGVTSTCEMHRTVLK--D--GQVVNVIDTPGLF   80 (240)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~-~~-~-----------~~~~~~t~~~~~~~~~~~--~--~~~~~l~DtpG~~   80 (240)
                      ..++|+++|+.++|||||+++|++.... .. .           ....+.|.........|.  +  ...+++|||||+.
T Consensus         5 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~   84 (600)
T 2ywe_A            5 NVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHV   84 (600)
T ss_dssp             GEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSG
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcH
Confidence            3589999999999999999999753110 00 0           001233443333334442  1  2578899999999


Q ss_pred             CCCCCCcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363           81 DFSAGSEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        81 ~~~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~  139 (240)
                      ++......  ..+|++++|+|++++.+.+....+..+...     ..|+++++||+|....
T Consensus        85 dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~-----~ipiIvviNKiDl~~a  140 (600)
T 2ywe_A           85 DFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQ-----DLVIIPVINKIDLPSA  140 (600)
T ss_dssp             GGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHT-----TCEEEEEEECTTSTTC
T ss_pred             hHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHC-----CCCEEEEEeccCcccc
Confidence            87543333  789999999999988888887777665431     2569999999996543

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.43  E-value=2.3e-13  Score=115.96  Aligned_cols=117  Identities=19%  Similarity=0.235  Sum_probs=67.0

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCC-cc-------------cc---------------CCCCCcceeEEEEEEEEeC
Q 036363           17 NGVRTVVLVGHTGNGKSATGNSILGRRA-FK-------------SR---------------ASSSGVTSTCEMHRTVLKD   67 (240)
Q Consensus        17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~-~~-------------~~---------------~~~~~~t~~~~~~~~~~~~   67 (240)
                      ....+|+++|+.++|||||+++|++... +.             .+               ....+.|....+..+.+ +
T Consensus        41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~-~  119 (467)
T 1r5b_A           41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFET-E  119 (467)
T ss_dssp             CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEEC-S
T ss_pred             CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEec-C
Confidence            3457999999999999999999974211 00             00               00134555555555556 6


Q ss_pred             CcEEEEEeCCCCCCCCCCCcC--CCceEEEEEEECCCCCC-------HHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           68 GQVVNVIDTPGLFDFSAGSEF--DEIHAALVVFSVRSRFS-------QEEEATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        68 ~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~v~~~~~~~~-------~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      +..+.+|||||+.++......  ..+|++++|+|++++..       .+....+..+. ..+   .+++++++||+|...
T Consensus       120 ~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~-~~~---vp~iivviNK~Dl~~  195 (467)
T 1r5b_A          120 HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLAR-TQG---INHLVVVINKMDEPS  195 (467)
T ss_dssp             SEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHH-HTT---CSSEEEEEECTTSTT
T ss_pred             CeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHH-HcC---CCEEEEEEECccCCC
Confidence            788999999999988655444  88999999999986531       23333333332 222   245899999999643

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.43  E-value=3.5e-13  Score=108.48  Aligned_cols=115  Identities=17%  Similarity=0.111  Sum_probs=74.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCC-C--cC--CCceEEE
Q 036363           21 TVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAG-S--EF--DEIHAAL   95 (240)
Q Consensus        21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~-~--~~--~~~~~~l   95 (240)
                      +|+++|.+|+||||+++.+.+...+. .....+.|........  .....+.+|||||+..+... .  ..  +++++++
T Consensus         1 KIvllGdsgvGKTSLl~~~~~~~~~~-~~~~~~~Tig~~~~~v--~~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~I   77 (331)
T 3r7w_B            1 MVLLMGVRRCGKSSICKVVFHNMQPL-DTLYLESTSNPSLEHF--STLIDLAVMELPGQLNYFEPSYDSERLFKSVGALV   77 (331)
T ss_dssp             CEEEECSTTSSTTHHHHHHHSCCCSG-GGTTCCCCCSCCCEEE--CSSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEE
T ss_pred             CEEEECCCCCCHHHHHHHHHcCCCCC-ccceecCeeeeeeEEE--ccEEEEEEEECCCchhccchhhhhhhhccCCCEEE
Confidence            58999999999999999888664322 1111223333222222  13468899999999998642 1  22  8999999


Q ss_pred             EEEECCCCCCHHHHHHHHHHHHHh-CCCcCCeEEEEEeCCCCCCC
Q 036363           96 VVFSVRSRFSQEEEATLHSLQTLF-GKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        96 ~v~~~~~~~~~~~~~~l~~l~~~~-~~~~~~~~i~v~~~~D~~~~  139 (240)
                      +|+|++++ .......|..+.... ......|+++++||+|...+
T Consensus        78 lV~Ditd~-~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~  121 (331)
T 3r7w_B           78 YVIDSQDE-YINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSE  121 (331)
T ss_dssp             EECCCSSC-TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCS
T ss_pred             EEEECCch-HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCch
Confidence            99999976 444444443332211 11123679999999996543

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.41  E-value=7e-13  Score=114.96  Aligned_cols=117  Identities=16%  Similarity=0.172  Sum_probs=73.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEE----EEEEe---CCcEEEEEeCCCCCCCCCCCcC--
Q 036363           18 GVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMH----RTVLK---DGQVVNVIDTPGLFDFSAGSEF--   88 (240)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~----~~~~~---~~~~~~l~DtpG~~~~~~~~~~--   88 (240)
                      ...+|+++|.+|+|||||+|++++...........+.+......    .....   .+..+.+|||||...+......  
T Consensus        40 ~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~~l  119 (535)
T 3dpu_A           40 QEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQFFM  119 (535)
T ss_dssp             CEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHHHc
Confidence            34899999999999999999999876432222222222211100    00110   2468999999998777665444  


Q ss_pred             CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363           89 DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        89 ~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~  139 (240)
                      ..+|++++|+|+++.  .....++..+....+   ..|+++|+||+|....
T Consensus       120 ~~~d~ii~V~D~s~~--~~~~~~~~~l~~~~~---~~pvilV~NK~Dl~~~  165 (535)
T 3dpu_A          120 TRSSVYMLLLDSRTD--SNKHYWLRHIEKYGG---KSPVIVVMNKIDENPS  165 (535)
T ss_dssp             HSSEEEEEEECGGGG--GGHHHHHHHHHHHSS---SCCEEEEECCTTTCTT
T ss_pred             cCCcEEEEEEeCCCc--hhHHHHHHHHHHhCC---CCCEEEEEECCCcccc
Confidence            789999999999743  233455556655432   2679999999996543

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=99.39  E-value=2.3e-13  Score=123.30  Aligned_cols=115  Identities=24%  Similarity=0.321  Sum_probs=80.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCcccc--------------CCCCCcceeEEEEEEEEe---------------CC
Q 036363           18 GVRTVVLVGHTGNGKSATGNSILGRRAFKSR--------------ASSSGVTSTCEMHRTVLK---------------DG   68 (240)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~--------------~~~~~~t~~~~~~~~~~~---------------~~   68 (240)
                      ..++|+|+|+.|+|||||+++|++.......              ....+.|.........|.               .+
T Consensus        18 ~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~   97 (842)
T 1n0u_A           18 NVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNS   97 (842)
T ss_dssp             GEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSE
T ss_pred             cccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCC
Confidence            4589999999999999999999864211110              001233433333334441               15


Q ss_pred             cEEEEEeCCCCCCCCCCCcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363           69 QVVNVIDTPGLFDFSAGSEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDEL  137 (240)
Q Consensus        69 ~~~~l~DtpG~~~~~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~  137 (240)
                      ..+++|||||+.++......  +.+|++++|+|++++.+.+....|..+..   .  ..|+++++||+|..
T Consensus        98 ~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~---~--~~p~ilviNK~D~~  163 (842)
T 1n0u_A           98 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALG---E--RIKPVVVINKVDRA  163 (842)
T ss_dssp             EEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHH---T--TCEEEEEEECHHHH
T ss_pred             ceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH---c--CCCeEEEEECCCcc
Confidence            67899999999998765444  88999999999998888888777766543   1  25789999999965

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=99.38  E-value=3.6e-12  Score=106.13  Aligned_cols=81  Identities=16%  Similarity=0.077  Sum_probs=43.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEE---------------------EEeC---CcEEEEEe
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRT---------------------VLKD---GQVVNVID   75 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~---------------------~~~~---~~~~~l~D   75 (240)
                      .+|+++|.+|+|||||+|+|++.....+..  .++|........                     .+ +   ...+.+||
T Consensus         1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~--p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~-~~~~~~~i~lvD   77 (397)
T 1wxq_A            1 MEIGVVGKPNVGKSTFFSAATLVDVEIANY--PFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYR-NGLALIPVKMVD   77 (397)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC----------------CCEEEEEEEEECSCSSSCCSCCCSSSCEE-TTEEEEEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCC--CCcccCCceEEEeeccCCchHHhhhhccccccccc-CCcceEEEEEEE
Confidence            379999999999999999999976221211  222322221111                     11 2   24689999


Q ss_pred             CCCCCCCCCCC---------cCCCceEEEEEEECCCC
Q 036363           76 TPGLFDFSAGS---------EFDEIHAALVVFSVRSR  103 (240)
Q Consensus        76 tpG~~~~~~~~---------~~~~~~~~l~v~~~~~~  103 (240)
                      |||+.......         ..+.+|++++|+|+++.
T Consensus        78 tpG~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~  114 (397)
T 1wxq_A           78 VAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK  114 (397)
T ss_dssp             CC---------------CCCSSTTCSEEEEEEETTCC
T ss_pred             CCCcccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence            99996532111         11889999999999854

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=99.38  E-value=4.6e-14  Score=124.37  Aligned_cols=116  Identities=21%  Similarity=0.312  Sum_probs=89.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHh---CCCCccc----cC-C--------CCCcceeEEEEEEEEeCCcEEEEEeCCCCCCC
Q 036363           19 VRTVVLVGHTGNGKSATGNSIL---GRRAFKS----RA-S--------SSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDF   82 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~---g~~~~~~----~~-~--------~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~   82 (240)
                      .++|+|+|+.++|||||..+|+   |.....+    +. .        ..|.|......++.| ++..++++||||+.||
T Consensus         2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~-~~~~iNlIDTPGH~DF   80 (638)
T 3j25_A            2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQW-ENTKVNIIDTPGHMDF   80 (638)
T ss_dssp             CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBC-SSCBCCCEECCCSSST
T ss_pred             eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEE-CCEEEEEEECCCcHHH
Confidence            4789999999999999999986   3211100    00 0        015566666666777 8899999999999999


Q ss_pred             CCCCcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCC
Q 036363           83 SAGSEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEAN  140 (240)
Q Consensus        83 ~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~  140 (240)
                      ......  +.+|++++|+|+..+...+....|+.+.+.  .   .|.++++||+|....+
T Consensus        81 ~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~--~---lp~i~~INKmDr~~a~  135 (638)
T 3j25_A           81 LAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKM--G---IPTIFFINKIDQNGID  135 (638)
T ss_dssp             HHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHH--T---CSCEECCEECCSSSCC
T ss_pred             HHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHc--C---CCeEEEEeccccccCC
Confidence            876665  999999999999999999999999888754  1   3568889999976553

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.38  E-value=8.8e-13  Score=106.09  Aligned_cols=140  Identities=18%  Similarity=0.158  Sum_probs=71.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC-CCccccCCCC----CcceeEEEEEEEEe---CCcEEEEEeCCCCCCC-------CC
Q 036363           20 RTVVLVGHTGNGKSATGNSILGR-RAFKSRASSS----GVTSTCEMHRTVLK---DGQVVNVIDTPGLFDF-------SA   84 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~-~~~~~~~~~~----~~t~~~~~~~~~~~---~~~~~~l~DtpG~~~~-------~~   84 (240)
                      .+|+|+|++|+|||||+|+|+|. ..+.++....    ..+...........   ....+.+|||||+...       ..
T Consensus        19 ~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~~~   98 (301)
T 2qnr_A           19 FTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFKT   98 (301)
T ss_dssp             EEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------CTT
T ss_pred             EEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHHHH
Confidence            67799999999999999999987 4333331100    11111111111110   1246899999999432       21


Q ss_pred             CCc-------C---------------CCceEEEEEEECCC-CCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCCc
Q 036363           85 GSE-------F---------------DEIHAALVVFSVRS-RFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEAND  141 (240)
Q Consensus        85 ~~~-------~---------------~~~~~~l~v~~~~~-~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~~  141 (240)
                      ...       .               ..+++++|+++++. .++..+...++.+    ..  ..++++|+||.|..... 
T Consensus        99 l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~~l~~l----~~--~~~iilV~~K~Dl~~~~-  171 (301)
T 2qnr_A           99 IISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI----HN--KVNIVPVIAKADTLTLK-  171 (301)
T ss_dssp             HHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHHHHHHH----TT--TSCEEEEECCGGGSCHH-
T ss_pred             HHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHHHHHHH----Hh--cCCEEEEEEeCCCCCHH-
Confidence            111       0               34567888888764 4888775444443    22  24699999999965432 


Q ss_pred             ccHHHHhcccCCchHHHHHHHhCCcEEEEeC
Q 036363          142 ETLEDYLGRECPKPLKEILHLFDNRCVLFDN  172 (240)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (240)
                       .+..+..     .+...+...+..++.++.
T Consensus       172 -e~~~~~~-----~~~~~~~~~~~~~~e~Sa  196 (301)
T 2qnr_A          172 -ERERLKK-----RILDEIEEHNIKIYHLPD  196 (301)
T ss_dssp             -HHHHHHH-----HHHHHHHHTTCCCCCCC-
T ss_pred             -HHHHHHH-----HHHHHHHHcCCeEEecCC
Confidence             2222111     234455555555554443

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=99.38  E-value=7.1e-13  Score=118.30  Aligned_cols=118  Identities=29%  Similarity=0.326  Sum_probs=86.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCCcc-------c---------cCCCCCcceeEEEEEEEEe------CCcEEEEE
Q 036363           17 NGVRTVVLVGHTGNGKSATGNSILGRRAFK-------S---------RASSSGVTSTCEMHRTVLK------DGQVVNVI   74 (240)
Q Consensus        17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~-------~---------~~~~~~~t~~~~~~~~~~~------~~~~~~l~   74 (240)
                      ...++|+|+|+.++|||||..+|+-.....       .         .....+.|......+..|.      ++..++++
T Consensus        11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlI   90 (709)
T 4fn5_A           11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVI   90 (709)
T ss_dssp             GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEE
T ss_pred             HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEE
Confidence            456899999999999999999986322110       0         0112355666666666662      24689999


Q ss_pred             eCCCCCCCCCCCcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363           75 DTPGLFDFSAGSEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        75 DtpG~~~~~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~  139 (240)
                      ||||+.||......  +-+|++++|+|+..+...+....|+.+...     ..|.++++||+|....
T Consensus        91 DTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~-----~lp~i~~iNKiDr~~a  152 (709)
T 4fn5_A           91 DTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKY-----GVPRIVYVNKMDRQGA  152 (709)
T ss_dssp             CCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHH-----TCCEEEEEECSSSTTC
T ss_pred             eCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHc-----CCCeEEEEccccccCc
Confidence            99999999876665  899999999999999999999999998754     2468999999997654

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.37  E-value=2.8e-12  Score=107.13  Aligned_cols=124  Identities=15%  Similarity=0.040  Sum_probs=78.1

Q ss_pred             CCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC-cEEEEEeCCCCCCCCCCC
Q 036363            8 DDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG-QVVNVIDTPGLFDFSAGS   86 (240)
Q Consensus         8 ~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~l~DtpG~~~~~~~~   86 (240)
                      .+++|.+..+  ..|+|+|++|||||||+++|++..+...+.  ...|.......+.+ .+ ..+.++||||+.......
T Consensus       148 ~~i~lelk~g--~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~--~ftTl~p~~G~V~~-~~~~~~~l~DtpGli~~a~~~  222 (416)
T 1udx_A          148 RRLRLELMLI--ADVGLVGYPNAGKSSLLAAMTRAHPKIAPY--PFTTLSPNLGVVEV-SEEERFTLADIPGIIEGASEG  222 (416)
T ss_dssp             EEEEEEECCS--CSEEEECCGGGCHHHHHHHHCSSCCEECCC--TTCSSCCEEEEEEC-SSSCEEEEEECCCCCCCGGGS
T ss_pred             eeeeeEEcCC--CEEEEECCCCCcHHHHHHHHHcCCccccCc--ccceecceeeEEEe-cCcceEEEEeccccccchhhh
Confidence            4577777777  789999999999999999999986432222  22233333334444 43 788999999997542211


Q ss_pred             cC---------CCceEEEEEEECCCCCCHHHHHH-HHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363           87 EF---------DEIHAALVVFSVRSRFSQEEEAT-LHSLQTLFGKNCFDYMIVVFSGRDEL  137 (240)
Q Consensus        87 ~~---------~~~~~~l~v~~~~~~~~~~~~~~-l~~l~~~~~~~~~~~~i~v~~~~D~~  137 (240)
                      ..         ..++.++++++++ +-...+... .+.+......-...|.++|+||+|..
T Consensus       223 ~~L~~~fl~~~era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~  282 (416)
T 1udx_A          223 KGLGLEFLRHIARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLL  282 (416)
T ss_dssp             CCSCHHHHHHHTSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTS
T ss_pred             hhhhHHHHHHHHHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChh
Confidence            11         5689999999997 333333222 22222210001125688999999954

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.37  E-value=2.4e-12  Score=96.21  Aligned_cols=57  Identities=23%  Similarity=0.317  Sum_probs=39.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCC
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFS   83 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~   83 (240)
                      .+|+++|++|+|||||+|++++...... .. .+.+.....  ..+ .  .+.+|||||+....
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~-~~-~~~t~~~~~--~~~-~--~~~l~Dt~G~~~~~   58 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTGKKVRRG-KR-PGVTRKIIE--IEW-K--NHKIIDMPGFGFMM   58 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHSCCCSSS-SS-TTCTTSCEE--EEE-T--TEEEEECCCBSCCT
T ss_pred             cEEEEECCCCCCHHHHHHHHhCcCCccC-CC-CCccceeEE--Eec-C--CEEEEECCCccccc
Confidence            5899999999999999999999864322 22 233433322  222 3  68899999976543

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=99.36  E-value=1.1e-12  Score=120.11  Aligned_cols=116  Identities=17%  Similarity=0.224  Sum_probs=76.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCC------cc--------ccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCC
Q 036363           18 GVRTVVLVGHTGNGKSATGNSILGRRA------FK--------SRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFS   83 (240)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlin~l~g~~~------~~--------~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~   83 (240)
                      +..+|+++|+.++|||||+++|++...      +.        ......|.|.......+.. .+..+.+|||||+.++.
T Consensus       295 ~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~-~~~kI~IIDTPGHedF~  373 (1289)
T 3avx_A          295 PHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDT-PTRHYAHVDCPGHADYV  373 (1289)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEEC-SSCEEEEEECCCHHHHH
T ss_pred             CeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcC-CCEEEEEEECCChHHHH
Confidence            458999999999999999999986410      00        0011234444433333444 56789999999998764


Q ss_pred             CCCcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           84 AGSEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        84 ~~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      .....  ..+|++++|+|++++...+....+..+.. .+   .+++++++||+|...
T Consensus       374 ~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~-lg---IP~IIVVINKiDLv~  426 (1289)
T 3avx_A          374 KNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQ-VG---VPYIIVFLNKCDMVD  426 (1289)
T ss_dssp             HHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHH-HT---CSCEEEEEECCTTCC
T ss_pred             HHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHH-cC---CCeEEEEEeeccccc
Confidence            32221  78999999999997777777777665543 22   244889999999654

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.22  E-value=8.8e-12  Score=97.98  Aligned_cols=47  Identities=17%  Similarity=0.172  Sum_probs=31.1

Q ss_pred             CceEEEEEEECCCC--CCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363           90 EIHAALVVFSVRSR--FSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDEL  137 (240)
Q Consensus        90 ~~~~~l~v~~~~~~--~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~  137 (240)
                      ++|++++|+|++++  .+.... .++..+...... ...|+++|+||+|..
T Consensus       162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~-~~~piilV~NK~Dl~  211 (255)
T 3c5h_A          162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAK-TKKPIVVVLTKCDEG  211 (255)
T ss_dssp             ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHH-TTCCEEEEEECGGGB
T ss_pred             cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhcc-CCCCEEEEEEccccc
Confidence            58999999999976  676653 444445443211 136799999999954

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=99.13  E-value=1.4e-10  Score=94.89  Aligned_cols=120  Identities=12%  Similarity=0.006  Sum_probs=67.6

Q ss_pred             ccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccc------cCCCCC---------------------cceeE
Q 036363            6 IDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKS------RASSSG---------------------VTSTC   58 (240)
Q Consensus         6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~------~~~~~~---------------------~t~~~   58 (240)
                      +.+++++....+  ..|+++|++|+|||||+|.|++.....+      +..+..                     ....+
T Consensus        45 ~~~~l~~~~~~~--~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~i~  122 (341)
T 2p67_A           45 LLDAIMPYCGNT--LRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIR  122 (341)
T ss_dssp             HHHHHGGGCSCS--EEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEE
T ss_pred             HHHhCCcccCCC--EEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCCceee
Confidence            344566777777  9999999999999999999974321000      000000                     00000


Q ss_pred             EEEE-----------------EEEeCCcEEEEEeCCCCCCCCCCCcCCCceEEEEEEECCCCCCHHHHHHHHHHHHHhCC
Q 036363           59 EMHR-----------------TVLKDGQVVNVIDTPGLFDFSAGSEFDEIHAALVVFSVRSRFSQEEEATLHSLQTLFGK  121 (240)
Q Consensus        59 ~~~~-----------------~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~  121 (240)
                      ....                 +.+ .+..+.++||||+.++... ....+|++++|++++.....   ..+..  ...  
T Consensus       123 ~~~~~~~l~g~~~~~~~~~~~~~~-~~~~i~liDTpG~~~~~~~-~~~~aD~vl~Vvd~~~~~~~---~~l~~--~~~--  193 (341)
T 2p67_A          123 PVPSSGHLGGASQRARELMLLCEA-AGYDVVIVETVGVGQSETE-VARMVDCFISLQIAGGGDDL---QGIKK--GLM--  193 (341)
T ss_dssp             EECC-----CHHHHHHHHHHHHHH-TTCSEEEEEEECCTTHHHH-HHTTCSEEEEEECC---------CCCCH--HHH--
T ss_pred             cCccccccchhHHHHHHHHHHhhc-cCCCEEEEeCCCccchHHH-HHHhCCEEEEEEeCCccHHH---HHHHH--hhh--
Confidence            0000                 002 4668999999998754321 11789999999998632111   11110  001  


Q ss_pred             CcCCeEEEEEeCCCCCC
Q 036363          122 NCFDYMIVVFSGRDELE  138 (240)
Q Consensus       122 ~~~~~~i~v~~~~D~~~  138 (240)
                        ..|.++|+||+|...
T Consensus       194 --~~p~ivv~NK~Dl~~  208 (341)
T 2p67_A          194 --EVADLIVINKDDGDN  208 (341)
T ss_dssp             --HHCSEEEECCCCTTC
T ss_pred             --cccCEEEEECCCCCC
Confidence              135789999999653

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=99.13  E-value=1.7e-10  Score=95.53  Aligned_cols=85  Identities=18%  Similarity=0.070  Sum_probs=58.8

Q ss_pred             cCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC-----------------cEEEEEe
Q 036363           13 TSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG-----------------QVVNVID   75 (240)
Q Consensus        13 ~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~-----------------~~~~l~D   75 (240)
                      .+..+  .+|+|+|+||+|||||+|+|+|........ .+++|.......+.+ .+                 ..+.+||
T Consensus        16 ~v~~g--~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~-~p~tTi~p~~G~v~v-~~~r~~~l~~~~~~~~~v~~~i~lvD   91 (392)
T 1ni3_A           16 RPGNN--LKTGIVGMPNVGKSTFFRAITKSVLGNPAN-YPYATIDPEEAKVAV-PDERFDWLCEAYKPKSRVPAFLTVFD   91 (392)
T ss_dssp             SSSSC--CEEEEEECSSSSHHHHHHHHHHSTTTSTTC-CSSCCCCTTEEEEEE-CCHHHHHHHHHHCCSEEECEEEEEEC
T ss_pred             cccCC--CEEEEECCCCCCHHHHHHHHHCCCcccccC-CCceeecceeeeeee-CCcchhhhhhhcccccccCcceEEEe
Confidence            44555  899999999999999999999965412221 123333333333444 32                 3578999


Q ss_pred             CCCCCCCCCCCcC---------CCceEEEEEEECC
Q 036363           76 TPGLFDFSAGSEF---------DEIHAALVVFSVR  101 (240)
Q Consensus        76 tpG~~~~~~~~~~---------~~~~~~l~v~~~~  101 (240)
                      |||+....+....         ..+|++++|+++.
T Consensus        92 ~pGl~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~  126 (392)
T 1ni3_A           92 IAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAF  126 (392)
T ss_dssp             TGGGCCCCCSSSSSCHHHHHHHTTCSEEEEEEECC
T ss_pred             ccccccCCcHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            9999876554332         7889999999986

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=99.11  E-value=4.6e-11  Score=99.58  Aligned_cols=125  Identities=22%  Similarity=0.216  Sum_probs=76.2

Q ss_pred             ccCCccccCCCCC------------------ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCccee-EEEEEEEEe
Q 036363            6 IDDDCELTSPSNG------------------VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTST-CEMHRTVLK   66 (240)
Q Consensus         6 ~~~~~~~~~~~~~------------------~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~-~~~~~~~~~   66 (240)
                      +++++++.+.+|.                  ...++|+|+||||||||+|+|+|...+..+....+.+.. .........
T Consensus        38 ~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~  117 (413)
T 1tq4_A           38 ILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHP  117 (413)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECS
T ss_pred             HhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecccc
Confidence            5677888888882                  119999999999999999999998766665543332211 001111111


Q ss_pred             CCcEEEEEeCCCCCCCCCCCcC-------CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363           67 DGQVVNVIDTPGLFDFSAGSEF-------DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDEL  137 (240)
Q Consensus        67 ~~~~~~l~DtpG~~~~~~~~~~-------~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~  137 (240)
                      ....++++|+||+.........       ...+.+++ ++.. +...........+...     ..|+++|.|+.|.+
T Consensus       118 ~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~~~~~~~-lS~G-~~~kqrv~la~aL~~~-----~~p~~lV~tkpdll  188 (413)
T 1tq4_A          118 NIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFII-ISAT-RFKKNDIDIAKAISMM-----KKEFYFVRTKVDSD  188 (413)
T ss_dssp             SCTTEEEEECCCGGGSSCCHHHHHHHTTGGGCSEEEE-EESS-CCCHHHHHHHHHHHHT-----TCEEEEEECCHHHH
T ss_pred             ccCCeeehHhhcccchHHHHHHHHHHcCCCccCCeEE-eCCC-CccHHHHHHHHHHHhc-----CCCeEEEEecCccc
Confidence            1235789999998643211111       23344444 6665 3555555555555431     26799999999864

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=99.10  E-value=5.4e-10  Score=98.03  Aligned_cols=29  Identities=21%  Similarity=0.308  Sum_probs=21.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCc-cccC
Q 036363           21 TVVLVGHTGNGKSATGNSILGRRAF-KSRA   49 (240)
Q Consensus        21 ~i~lvG~~g~GKSTlin~l~g~~~~-~~~~   49 (240)
                      .|+|+|++|||||||+++|+|...+ .+|.
T Consensus        47 ~iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~   76 (608)
T 3szr_A           47 AIAVIGDQSSGKSSVLEALSGVALPRGSGI   76 (608)
T ss_dssp             CEECCCCTTSCHHHHHHHHHSCC-------
T ss_pred             eEEEECCCCChHHHHHHHHhCCCCCCCCCe
Confidence            4999999999999999999998655 3443

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=99.10  E-value=5.6e-11  Score=97.28  Aligned_cols=80  Identities=16%  Similarity=0.029  Sum_probs=53.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC-----------------cEEEEEeCCCCCCC
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG-----------------QVVNVIDTPGLFDF   82 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~-----------------~~~~l~DtpG~~~~   82 (240)
                      .+|+|||.+|+|||||+|+|++.....+..  +++|.......+.+ .+                 ..+.+|||||+..+
T Consensus         3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~--p~tTi~p~~g~v~~-~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~   79 (363)
T 1jal_A            3 FKCGIVGLPNVGKSTLFNALTKAGIEAANY--PFCTIEPNTGVVPM-PDPRLDALAEIVKPERILPTTMEFVDIAGLVAG   79 (363)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTC--------CCCCCCCCSSEEEC-CCHHHHHHHHHHCCSEEECCEEEEEECCSCCTT
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCC--CCceECceEEEEec-CCcccceeeeeecccceeeeEEEEEECCCCccc
Confidence            689999999999999999999866322211  22233322222333 22                 46899999999875


Q ss_pred             CC----CCcC-----CCceEEEEEEECCC
Q 036363           83 SA----GSEF-----DEIHAALVVFSVRS  102 (240)
Q Consensus        83 ~~----~~~~-----~~~~~~l~v~~~~~  102 (240)
                      ..    ....     +.+|++++|+|+++
T Consensus        80 a~~~~gl~~~fl~~ir~ad~il~VvD~~~  108 (363)
T 1jal_A           80 ASKGEGLGNKFLANIRETDAIGHVVRCFE  108 (363)
T ss_dssp             HHHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred             ccccchHHHHHHHHHHhcCeEEEEEecCC
Confidence            31    1111     78999999999984

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=99.09  E-value=2.7e-12  Score=106.09  Aligned_cols=110  Identities=21%  Similarity=0.220  Sum_probs=68.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC-----CCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC------
Q 036363           20 RTVVLVGHTGNGKSATGNSILGR-----RAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF------   88 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~-----~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~------   88 (240)
                      .+|+++|.+|+|||||+|+|++.     .....+. ..++|.....  ..+  +..+.++||||+.+.......      
T Consensus       163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~-~~gtT~~~~~--~~~--~~~~~liDtPG~~~~~~~~~~l~~~~l  237 (369)
T 3ec1_A          163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSY-FPGTTLDMIE--IPL--ESGATLYDTPGIINHHQMAHFVDARDL  237 (369)
T ss_dssp             SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEE-CTTSSCEEEE--EEC--STTCEEEECCSCCCCSSGGGGSCTTTH
T ss_pred             CcEEEEcCCCCchHHHHHHHHhhccCCccceeecC-CCCeEEeeEE--EEe--CCCeEEEeCCCcCcHHHHHHHHhHHHH
Confidence            68999999999999999999986     2222221 2344544332  222  334789999999876422211      


Q ss_pred             ------CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363           89 ------DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        89 ------~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~  139 (240)
                            ..++.++|++++...+-......+..+     .....++++++||.|.+..
T Consensus       238 ~~~~~~~~i~~~~~~l~~~~~~~~g~l~~l~~l-----~~~~~~~~~v~~k~d~~~~  289 (369)
T 3ec1_A          238 KIITPKREIHPRVYQLNEGQTLFFGGLARLDYI-----KGGRRSFVCYMANELTVHR  289 (369)
T ss_dssp             HHHSCSSCCCCEEEEECTTEEEEETTTEEEEEE-----ESSSEEEEEEECTTSCEEE
T ss_pred             HHHhcccccCceEEEEcCCceEEECCEEEEEEc-----cCCCceEEEEecCCccccc
Confidence                  778999999988421111111112222     1223579999999997743

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=99.08  E-value=9.5e-11  Score=96.86  Aligned_cols=86  Identities=17%  Similarity=0.109  Sum_probs=46.8

Q ss_pred             cCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeC----------------CcEEEEEeC
Q 036363           13 TSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKD----------------GQVVNVIDT   76 (240)
Q Consensus        13 ~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~----------------~~~~~l~Dt   76 (240)
                      .+..+  .+|+|+|.+|+|||||+|+|++.....+.  ..++|.......+.+++                ...+.+|||
T Consensus        18 ~i~~~--~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~--~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDt   93 (396)
T 2ohf_A           18 RFGTS--LKIGIVGLPNVGKSTFFNVLTNSQASAEN--FPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDI   93 (396)
T ss_dssp             CSSSC--CCEEEECCSSSSHHHHHHHHHC---------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEEC
T ss_pred             hccCC--CEEEEECCCCCCHHHHHHHHHCCCccccC--CCccccCceeEEEEECCccceeeccccCcccccccccEEEEC
Confidence            33444  89999999999999999999997542221  12333333333333311                224899999


Q ss_pred             CCCCCCCCCCcC---------CCceEEEEEEECCC
Q 036363           77 PGLFDFSAGSEF---------DEIHAALVVFSVRS  102 (240)
Q Consensus        77 pG~~~~~~~~~~---------~~~~~~l~v~~~~~  102 (240)
                      ||+..+......         +.+|++++|+|+.+
T Consensus        94 pGl~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~  128 (396)
T 2ohf_A           94 AGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFE  128 (396)
T ss_dssp             CC-----------CCHHHHHHHTSSSEEEEEEC--
T ss_pred             CCcccccchhhHHHHHHHHHHHhcCeEEEEEecCC
Confidence            999876543211         88999999999873

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=99.08  E-value=5.7e-12  Score=104.04  Aligned_cols=111  Identities=19%  Similarity=0.210  Sum_probs=66.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCcc-----ccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC------
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFK-----SRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF------   88 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~-----~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~------   88 (240)
                      .+|+++|.+|+|||||+|+|++.....     ......++|.....  ..+  +..+.++||||+.+.......      
T Consensus       161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~--~~~--~~~~~liDtPG~~~~~~~~~~l~~~~l  236 (368)
T 3h2y_A          161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLID--IPL--DEESSLYDTPGIINHHQMAHYVGKQSL  236 (368)
T ss_dssp             SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEE--EES--SSSCEEEECCCBCCTTSGGGGSCHHHH
T ss_pred             ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEE--EEe--cCCeEEEeCCCcCcHHHHHHHhhHHHH
Confidence            689999999999999999999863211     11112344443332  222  223789999999876532221      


Q ss_pred             ------CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363           89 ------DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        89 ------~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~  139 (240)
                            ..++.++|++++...........+..+     .....|+++++||.|.+..
T Consensus       237 ~~~~~~~~i~~~~~~l~~~~~~~~g~l~~~d~l-----~~~~~~~~~v~nk~d~~~~  288 (368)
T 3h2y_A          237 KLITPTKEIKPMVFQLNEEQTLFFSGLARFDYV-----SGGRRAFTCHFSNRLTIHR  288 (368)
T ss_dssp             HHHSCSSCCCCEEEEECTTEEEEETTTEEEEEE-----ESSSEEEEEEECTTSCEEE
T ss_pred             HHhccccccCceEEEEcCCCEEEEcceEEEEEe-----cCCCceEEEEecCcccccc
Confidence                  677888888887421111111112222     1223579999999998754

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=99.05  E-value=5.7e-12  Score=102.90  Aligned_cols=36  Identities=22%  Similarity=0.162  Sum_probs=32.1

Q ss_pred             CccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCC
Q 036363            5 RIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGR   42 (240)
Q Consensus         5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~   42 (240)
                      .+++++++.+..+  ..++|+|+||||||||+|.|+|.
T Consensus        43 ~~l~~i~~~~~~g--~~v~i~G~~GaGKSTLl~~l~g~   78 (337)
T 2qm8_A           43 DLIDAVLPQTGRA--IRVGITGVPGVGKSTTIDALGSL   78 (337)
T ss_dssp             HHHHHHGGGCCCS--EEEEEECCTTSCHHHHHHHHHHH
T ss_pred             HHHHhCCcccCCC--eEEEEECCCCCCHHHHHHHHHHh
Confidence            3567889999999  99999999999999999999853

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=99.03  E-value=2.9e-10  Score=93.53  Aligned_cols=81  Identities=22%  Similarity=0.140  Sum_probs=52.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEe--------------------CCcEEEEEeCCCC
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLK--------------------DGQVVNVIDTPGL   79 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~--------------------~~~~~~l~DtpG~   79 (240)
                      .+|+++|.+|+|||||+|+|++........  .++|.........++                    ....+.+|||||+
T Consensus         2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~--p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl   79 (368)
T 2dby_A            2 LAVGIVGLPNVGKSTLFNALTRANALAANY--PFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGL   79 (368)
T ss_dssp             CSEEEECCSSSSHHHHHHHHHHHHTTCSSC--CGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCcccCC--CCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCc
Confidence            579999999999999999999864211111  112222111111110                    2346899999999


Q ss_pred             CCCCCCCcC---------CCceEEEEEEECCC
Q 036363           80 FDFSAGSEF---------DEIHAALVVFSVRS  102 (240)
Q Consensus        80 ~~~~~~~~~---------~~~~~~l~v~~~~~  102 (240)
                      ..+......         +.+|++++|+|+++
T Consensus        80 ~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~  111 (368)
T 2dby_A           80 VKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP  111 (368)
T ss_dssp             CCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred             cccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence            876543221         78999999999974

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=99.02  E-value=2.4e-09  Score=88.07  Aligned_cols=61  Identities=16%  Similarity=0.053  Sum_probs=37.3

Q ss_pred             CCcEEEEEeCCCCCCCCCCCcCCCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363           67 DGQVVNVIDTPGLFDFSAGSEFDEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDEL  137 (240)
Q Consensus        67 ~~~~~~l~DtpG~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~  137 (240)
                      .+..+.+|||||+...... ....+|++++|+++.......   .   +..   .-...|.++|+||+|..
T Consensus       170 ~~~~~iiiDTpGi~~~~~~-~~~~aD~vl~V~d~~~~~~~~---~---l~~---~~~~~p~ivVlNK~Dl~  230 (355)
T 3p32_A          170 AGFDVILIETVGVGQSEVA-VANMVDTFVLLTLARTGDQLQ---G---IKK---GVLELADIVVVNKADGE  230 (355)
T ss_dssp             TTCCEEEEEECSCSSHHHH-HHTTCSEEEEEEESSTTCTTT---T---CCT---TSGGGCSEEEEECCCGG
T ss_pred             CCCCEEEEeCCCCCcHHHH-HHHhCCEEEEEECCCCCccHH---H---HHH---hHhhcCCEEEEECCCCc
Confidence            3568899999996532110 017899999999987322111   1   110   00113689999999954

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=99.00  E-value=1.4e-10  Score=95.46  Aligned_cols=46  Identities=30%  Similarity=0.373  Sum_probs=40.8

Q ss_pred             CCCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            2 GGSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      |+..++++++|++++|  ..++|+|+||||||||+++|+|...+.+|.
T Consensus        14 g~~~~L~~vsl~i~~G--e~~~llGpsGsGKSTLLr~iaGl~~p~~G~   59 (381)
T 3rlf_A           14 GEVVVSKDINLDIHEG--EFVVFVGPSGCGKSTLLRMIAGLETITSGD   59 (381)
T ss_dssp             TTEEEEEEEEEEECTT--CEEEEECCTTSSHHHHHHHHHTSSCCSEEE
T ss_pred             CCEEEEeeeEEEECCC--CEEEEEcCCCchHHHHHHHHHcCCCCCCeE
Confidence            4556889999999999  999999999999999999999988766554

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=98.98  E-value=2e-10  Score=93.92  Aligned_cols=46  Identities=17%  Similarity=0.277  Sum_probs=41.0

Q ss_pred             CCCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            2 GGSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      |+..++++++|++++|  ..++|+||||||||||+++|+|...+.+|.
T Consensus        15 ~~~~~L~~vsl~i~~G--e~~~llGpsGsGKSTLLr~iaGl~~p~~G~   60 (359)
T 3fvq_A           15 QNTPVLNDISLSLDPG--EILFIIGASGCGKTTLLRCLAGFEQPDSGE   60 (359)
T ss_dssp             TTEEEEEEEEEEECTT--CEEEEEESTTSSHHHHHHHHHTSSCCSEEE
T ss_pred             CCEEEEEeeEEEEcCC--CEEEEECCCCchHHHHHHHHhcCCCCCCcE
Confidence            4556889999999999  999999999999999999999988766654

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=98.96  E-value=1.2e-09  Score=89.29  Aligned_cols=43  Identities=16%  Similarity=0.197  Sum_probs=38.9

Q ss_pred             CccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            5 RIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      .++++++|++++|  ..++|+|+||||||||+++|+|...+.+|.
T Consensus        42 ~aL~~vsl~i~~G--ei~~IiGpnGaGKSTLlr~i~GL~~p~~G~   84 (366)
T 3tui_C           42 QALNNVSLHVPAG--QIYGVIGASGAGKSTLIRCVNLLERPTEGS   84 (366)
T ss_dssp             EEEEEEEEEECTT--CEEEEECCTTSSHHHHHHHHHTSSCCSEEE
T ss_pred             EEEEeeEEEEcCC--CEEEEEcCCCchHHHHHHHHhcCCCCCceE
Confidence            5789999999999  999999999999999999999988766543

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=98.96  E-value=6.2e-10  Score=91.29  Aligned_cols=61  Identities=11%  Similarity=0.049  Sum_probs=34.2

Q ss_pred             CCcEEEEEeCCCCCCCCCCCcCCCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363           67 DGQVVNVIDTPGLFDFSAGSEFDEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDEL  137 (240)
Q Consensus        67 ~~~~~~l~DtpG~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~  137 (240)
                      .+..+.++||||+.... ......+|.+++|+++..+...   ..+..  ..+.    .+.++|+||+|..
T Consensus       165 ~~~~~iliDT~Gi~~~~-~~l~~~~d~vl~V~d~~~~~~~---~~i~~--~il~----~~~ivVlNK~Dl~  225 (349)
T 2www_A          165 AGYDIILIETVGVGQSE-FAVADMVDMFVLLLPPAGGDEL---QGIKR--GIIE----MADLVAVTKSDGD  225 (349)
T ss_dssp             TTCSEEEEECCCC--CH-HHHHTTCSEEEEEECCC-----------------CC----SCSEEEECCCSGG
T ss_pred             CCCCEEEEECCCcchhh-hhHHhhCCEEEEEEcCCcchhH---HHhHH--HHHh----cCCEEEEeeecCC
Confidence            45678999999986321 0011788999999998743211   11111  1111    3578999999954

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=98.93  E-value=4.8e-10  Score=92.37  Aligned_cols=47  Identities=21%  Similarity=0.256  Sum_probs=40.8

Q ss_pred             CCCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCC
Q 036363            2 GGSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRAS   50 (240)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~   50 (240)
                      |+..++++++|++++|  ..++|+|+||||||||+++|+|...+.+|..
T Consensus        14 ~~~~vl~~vsl~i~~G--e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I   60 (372)
T 1g29_1           14 GEVTAVREMSLEVKDG--EFMILLGPSGCGKTTTLRMIAGLEEPSRGQI   60 (372)
T ss_dssp             TTEEEEEEEEEEEETT--CEEEEECSTTSSHHHHHHHHHTSSCCSEEEE
T ss_pred             CCEEEEeeeEEEEcCC--CEEEEECCCCcHHHHHHHHHHcCCCCCccEE
Confidence            3456789999999999  9999999999999999999999887666543

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=98.93  E-value=3.2e-10  Score=92.87  Aligned_cols=46  Identities=24%  Similarity=0.260  Sum_probs=40.2

Q ss_pred             CCCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            2 GGSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      |+..++++++|++++|  ..++|+|+||||||||+++|+|...+.+|.
T Consensus        14 ~~~~vl~~vsl~i~~G--e~~~llGpnGsGKSTLLr~iaGl~~p~~G~   59 (359)
T 2yyz_A           14 GKVKAVDGVSFEVKDG--EFVALLGPSGCGKTTTLLMLAGIYKPTSGE   59 (359)
T ss_dssp             TTEEEEEEEEEEECTT--CEEEEECSTTSSHHHHHHHHHTSSCCSEEE
T ss_pred             CCEEEEeeeEEEEcCC--CEEEEEcCCCchHHHHHHHHHCCCCCCccE
Confidence            3456789999999999  999999999999999999999987766553

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=98.92  E-value=3e-10  Score=92.81  Aligned_cols=46  Identities=24%  Similarity=0.303  Sum_probs=40.6

Q ss_pred             CCCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            2 GGSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      |+..++++++|++++|  ..++|+|+||||||||+++|+|...+.+|.
T Consensus        26 g~~~vl~~vsl~i~~G--e~~~llGpnGsGKSTLLr~iaGl~~p~~G~   71 (355)
T 1z47_A           26 GGARSVRGVSFQIREG--EMVGLLGPSGSGKTTILRLIAGLERPTKGD   71 (355)
T ss_dssp             TSTTCEEEEEEEEETT--CEEEEECSTTSSHHHHHHHHHTSSCCSEEE
T ss_pred             CCCEEEeeeEEEECCC--CEEEEECCCCCcHHHHHHHHhCCCCCCccE
Confidence            4456899999999999  999999999999999999999988766554

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=98.92  E-value=1.7e-09  Score=93.83  Aligned_cols=99  Identities=21%  Similarity=0.225  Sum_probs=61.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCC-ccccCCCCCcceeEEEEEEEE--eCCcEEEEEeCCCCCCCCC-CCcC----
Q 036363           17 NGVRTVVLVGHTGNGKSATGNSILGRRA-FKSRASSSGVTSTCEMHRTVL--KDGQVVNVIDTPGLFDFSA-GSEF----   88 (240)
Q Consensus        17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~-~~~~~~~~~~t~~~~~~~~~~--~~~~~~~l~DtpG~~~~~~-~~~~----   88 (240)
                      ++..+|+|+|.+|+|||||+|.|+|... +..+..+.+.|.....+....  ..+..+.++||||+.+... ....    
T Consensus        36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~~~~~~~~~~~~  115 (592)
T 1f5n_A           36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVEKGDNQNDSWI  115 (592)
T ss_dssp             SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGGGCCCTTHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCcccccchhHHHHH
Confidence            3458899999999999999999999764 222222223333332222111  1456899999999987643 1211    


Q ss_pred             -----CCceEEEEEEECCCCCCHHHHHHHHHHHH
Q 036363           89 -----DEIHAALVVFSVRSRFSQEEEATLHSLQT  117 (240)
Q Consensus        89 -----~~~~~~l~v~~~~~~~~~~~~~~l~~l~~  117 (240)
                           ...+  ++|+++...++..+...+..+.+
T Consensus       116 fala~llss--~lv~n~~~~i~~~dl~~l~~v~e  147 (592)
T 1f5n_A          116 FALAVLLSS--TFVYNSIGTINQQAMDQLYYVTE  147 (592)
T ss_dssp             HHHHHHHCS--EEEEEEESCSSHHHHHTTHHHHT
T ss_pred             HHHHHHhcC--eEEEECCCCccHHHHHHHHHHHH
Confidence                 1112  45566666788888766665544

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=98.92  E-value=1.3e-09  Score=84.05  Aligned_cols=44  Identities=20%  Similarity=0.310  Sum_probs=39.3

Q ss_pred             CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 036363            3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSR   48 (240)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~   48 (240)
                      +..++++++|++++|  ..++|+|+||||||||++.|+|...+.+|
T Consensus        20 ~~~il~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G   63 (229)
T 2pze_A           20 GTPVLKDINFKIERG--QLLAVAGSTGAGKTSLLMMIMGELEPSEG   63 (229)
T ss_dssp             SCCSEEEEEEEEETT--CEEEEECCTTSSHHHHHHHHTTSSCCSEE
T ss_pred             CceeeeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCcCCcc
Confidence            356899999999999  99999999999999999999998765544

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=98.88  E-value=4.2e-10  Score=86.59  Aligned_cols=45  Identities=22%  Similarity=0.174  Sum_probs=39.6

Q ss_pred             CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      +..++++++|++++|  ..++|+|+||||||||++.|+|...+.+|.
T Consensus        16 ~~~~l~~vsl~i~~G--e~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~   60 (224)
T 2pcj_A           16 GYEILKGISLSVKKG--EFVSIIGASGSGKSTLLYILGLLDAPTEGK   60 (224)
T ss_dssp             TEEEEEEEEEEEETT--CEEEEEECTTSCHHHHHHHHTTSSCCSEEE
T ss_pred             CEeeEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCCCceE
Confidence            456889999999999  999999999999999999999987665543

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=98.88  E-value=4.6e-10  Score=92.34  Aligned_cols=45  Identities=24%  Similarity=0.248  Sum_probs=39.9

Q ss_pred             CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      +..++++++|++++|  ..++|+|+||||||||+++|+|...+.+|.
T Consensus        23 ~~~vl~~vsl~i~~G--e~~~llGpnGsGKSTLLr~iaGl~~p~~G~   67 (372)
T 1v43_A           23 NFTAVNKLNLTIKDG--EFLVLLGPSGCGKTTTLRMIAGLEEPTEGR   67 (372)
T ss_dssp             TEEEEEEEEEEECTT--CEEEEECCTTSSHHHHHHHHHTSSCCSEEE
T ss_pred             CEEEEeeeEEEECCC--CEEEEECCCCChHHHHHHHHHcCCCCCceE
Confidence            446789999999999  999999999999999999999988766553

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=98.88  E-value=1e-09  Score=85.48  Aligned_cols=45  Identities=18%  Similarity=0.201  Sum_probs=40.2

Q ss_pred             CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      +..++++++|.+++|  ..++|+|+||||||||++.|+|...+.+|.
T Consensus        14 ~~~vl~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~   58 (243)
T 1mv5_A           14 SEQILRDISFEAQPN--SIIAFAGPSGGGKSTIFSLLERFYQPTAGE   58 (243)
T ss_dssp             SSCSEEEEEEEECTT--EEEEEECCTTSSHHHHHHHHTTSSCCSBSC
T ss_pred             CCceEEEeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCcE
Confidence            456899999999999  999999999999999999999987665554

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=98.88  E-value=5e-10  Score=88.33  Aligned_cols=46  Identities=22%  Similarity=0.258  Sum_probs=40.5

Q ss_pred             CCCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            2 GGSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      ++..++++++|++++|  ..++|+|+||||||||+++|+|...+.+|.
T Consensus        22 ~~~~vL~~vsl~i~~G--e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~   67 (266)
T 4g1u_C           22 QQQALINDVSLHIASG--EMVAIIGPNGAGKSTLLRLLTGYLSPSHGE   67 (266)
T ss_dssp             TTEEEEEEEEEEEETT--CEEEEECCTTSCHHHHHHHHTSSSCCSSCE
T ss_pred             CCeeEEEeeEEEEcCC--CEEEEECCCCCcHHHHHHHHhcCCCCCCcE
Confidence            3557899999999999  999999999999999999999987665543

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=98.87  E-value=5.3e-10  Score=87.82  Aligned_cols=46  Identities=22%  Similarity=0.289  Sum_probs=40.3

Q ss_pred             CCCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            2 GGSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      |+..++++++|++++|  ..++|+|+||||||||+++|+|...+.+|.
T Consensus        18 ~~~~vl~~vsl~i~~G--e~~~liG~nGsGKSTLlk~l~Gl~~p~~G~   63 (257)
T 1g6h_A           18 GEFKALDGVSISVNKG--DVTLIIGPNGSGKSTLINVITGFLKADEGR   63 (257)
T ss_dssp             TTEEEEEEECCEEETT--CEEEEECSTTSSHHHHHHHHTTSSCCSEEE
T ss_pred             CCEeeEeeeEEEEeCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCcE
Confidence            3456889999999999  999999999999999999999987765553

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.87  E-value=3e-09  Score=84.56  Aligned_cols=60  Identities=22%  Similarity=0.346  Sum_probs=38.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCC
Q 036363           19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFS   83 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~   83 (240)
                      ..+|+++|.+|+|||||+|+|+|......+.. .++|.....  ..  .+..+.++||||+....
T Consensus       120 ~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~-~g~T~~~~~--~~--~~~~~~l~DtpG~~~~~  179 (282)
T 1puj_A          120 AIRALIIGIPNVGKSTLINRLAKKNIAKTGDR-PGITTSQQW--VK--VGKELELLDTPGILWPK  179 (282)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTSCCC-------------CC--EE--ETTTEEEEECCCCCCSC
T ss_pred             CceEEEEecCCCchHHHHHHHhcCceeecCCC-CCeeeeeEE--EE--eCCCEEEEECcCcCCCC
Confidence            37999999999999999999999765444332 344444332  11  24478899999998654

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=98.87  E-value=5.3e-10  Score=91.53  Aligned_cols=43  Identities=16%  Similarity=0.208  Sum_probs=38.9

Q ss_pred             ccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCC
Q 036363            6 IDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRAS   50 (240)
Q Consensus         6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~   50 (240)
                      ++++++|++++|  ..++|+|+||||||||+++|+|...+.+|..
T Consensus        20 vl~~vsl~i~~G--e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I   62 (353)
T 1oxx_K           20 ALDNVNINIENG--ERFGILGPSGAGKTTFMRIIAGLDVPSTGEL   62 (353)
T ss_dssp             EEEEEEEEECTT--CEEEEECSCHHHHHHHHHHHHTSSCCSEEEE
T ss_pred             eEeceEEEECCC--CEEEEECCCCCcHHHHHHHHhCCCCCCceEE
Confidence            789999999999  9999999999999999999999887666543

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=98.87  E-value=6.1e-10  Score=87.66  Aligned_cols=46  Identities=22%  Similarity=0.291  Sum_probs=40.3

Q ss_pred             CCCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            2 GGSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      |+..++++++|++++|  ..++|+|+||||||||+++|+|...+.+|.
T Consensus        17 ~~~~vl~~vsl~i~~G--e~~~liG~nGsGKSTLlk~l~Gl~~p~~G~   62 (262)
T 1b0u_A           17 GGHEVLKGVSLQARAG--DVISIIGSSGSGKSTFLRCINFLEKPSEGA   62 (262)
T ss_dssp             TTEEEEEEEEEEECTT--CEEEEECCTTSSHHHHHHHHTTSSCCSEEE
T ss_pred             CCEEEEEeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCcE
Confidence            3456889999999999  999999999999999999999987765544

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=98.87  E-value=6.6e-10  Score=87.40  Aligned_cols=45  Identities=18%  Similarity=0.228  Sum_probs=39.7

Q ss_pred             CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      +..++++++|++++|  ..++|+|+||||||||+++|+|...+.+|.
T Consensus        36 ~~~vL~~vsl~i~~G--ei~~liG~NGsGKSTLlk~l~Gl~~p~~G~   80 (263)
T 2olj_A           36 SLEVLKGINVHIREG--EVVVVIGPSGSGKSTFLRCLNLLEDFDEGE   80 (263)
T ss_dssp             TEEEEEEEEEEECTT--CEEEEECCTTSSHHHHHHHHTTSSCCSEEE
T ss_pred             CEEEEEeeEEEEcCC--CEEEEEcCCCCcHHHHHHHHHcCCCCCCcE
Confidence            456889999999999  999999999999999999999987665543

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=98.86  E-value=1.1e-09  Score=85.81  Aligned_cols=45  Identities=16%  Similarity=0.183  Sum_probs=39.8

Q ss_pred             CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      +..++++++|++++|  ..++|+|+||||||||++.|+|...+.+|.
T Consensus        17 ~~~vl~~isl~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~   61 (253)
T 2nq2_C           17 ENFLFQQLNFDLNKG--DILAVLGQNGCGKSTLLDLLLGIHRPIQGK   61 (253)
T ss_dssp             TTEEEEEEEEEEETT--CEEEEECCSSSSHHHHHHHHTTSSCCSEEE
T ss_pred             CCeEEEEEEEEECCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCcE
Confidence            456899999999999  899999999999999999999987665543

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=98.86  E-value=7.3e-10  Score=86.86  Aligned_cols=45  Identities=20%  Similarity=0.123  Sum_probs=39.8

Q ss_pred             CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      +..++++++|++++|  ..++|+|+||||||||+++|+|...+.+|.
T Consensus        27 ~~~vl~~vsl~i~~G--ei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~   71 (256)
T 1vpl_A           27 KKEILKGISFEIEEG--EIFGLIGPNGAGKTTTLRIISTLIKPSSGI   71 (256)
T ss_dssp             TEEEEEEEEEEECTT--CEEEEECCTTSSHHHHHHHHTTSSCCSEEE
T ss_pred             CEEEEEeeEEEEcCC--cEEEEECCCCCCHHHHHHHHhcCCCCCceE
Confidence            456889999999999  999999999999999999999987665543

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=98.84  E-value=7.9e-10  Score=87.51  Aligned_cols=44  Identities=16%  Similarity=0.140  Sum_probs=39.1

Q ss_pred             CCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            4 SRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      ..++++++|++++|  ..++|+|+||||||||+++|+|...+.+|.
T Consensus        21 ~~~L~~isl~i~~G--e~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~   64 (275)
T 3gfo_A           21 THALKGINMNIKRG--EVTAILGGNGVGKSTLFQNFNGILKPSSGR   64 (275)
T ss_dssp             CEEEEEEEEEEETT--SEEEEECCTTSSHHHHHHHHTTSSCCSEEE
T ss_pred             CeEEEeeEEEEcCC--CEEEEECCCCCCHHHHHHHHHcCCCCCCeE
Confidence            34899999999999  999999999999999999999987665543

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=98.84  E-value=8.7e-10  Score=85.41  Aligned_cols=43  Identities=21%  Similarity=0.149  Sum_probs=38.8

Q ss_pred             CccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            5 RIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      .++++++|++++|  ..++|+|+||||||||+++|+|...+.+|.
T Consensus        19 ~~L~~isl~i~~G--e~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~   61 (235)
T 3tif_A           19 YALKNVNLNIKEG--EFVSIMGPSGSGKSTMLNIIGCLDKPTEGE   61 (235)
T ss_dssp             EEEEEEEEEECTT--CEEEEECSTTSSHHHHHHHHTTSSCCSEEE
T ss_pred             eeEEeeeEEEcCC--CEEEEECCCCCcHHHHHHHHhcCCCCCceE
Confidence            4789999999999  999999999999999999999987765543

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=98.84  E-value=1.1e-09  Score=84.98  Aligned_cols=45  Identities=20%  Similarity=0.253  Sum_probs=39.7

Q ss_pred             CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      +..++++++|.+++|  ..++|+|+||||||||++.|+|...+.+|.
T Consensus        17 ~~~vl~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~   61 (237)
T 2cbz_A           17 DPPTLNGITFSIPEG--ALVAVVGQVGCGKSSLLSALLAEMDKVEGH   61 (237)
T ss_dssp             SCCSEEEEEEEECTT--CEEEEECSTTSSHHHHHHHHTTCSEEEEEE
T ss_pred             CCceeeeeEEEECCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCce
Confidence            357899999999999  999999999999999999999987655443

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=98.84  E-value=7.5e-10  Score=86.07  Aligned_cols=45  Identities=24%  Similarity=0.344  Sum_probs=39.6

Q ss_pred             CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      +..++++++|++++|  ..++|+|+||||||||++.|+|...+.+|.
T Consensus        18 ~~~vl~~vsl~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~   62 (240)
T 1ji0_A           18 AIHAIKGIDLKVPRG--QIVTLIGANGAGKTTTLSAIAGLVRAQKGK   62 (240)
T ss_dssp             TEEEEEEEEEEEETT--CEEEEECSTTSSHHHHHHHHTTSSCCSEEE
T ss_pred             CeeEEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCce
Confidence            346889999999999  999999999999999999999987665543

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=98.83  E-value=9.2e-10  Score=85.90  Aligned_cols=45  Identities=22%  Similarity=0.249  Sum_probs=39.8

Q ss_pred             CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      +..++++++|++++|  ..++|+|+||||||||+++|+|...+.+|.
T Consensus        21 ~~~vl~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~   65 (247)
T 2ff7_A           21 SPVILDNINLSIKQG--EVIGIVGRSGSGKSTLTKLIQRFYIPENGQ   65 (247)
T ss_dssp             SCEEEEEEEEEEETT--CEEEEECSTTSSHHHHHHHHTTSSCCSEEE
T ss_pred             CcceeeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCcE
Confidence            356899999999999  999999999999999999999987665543

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=98.83  E-value=8.2e-10  Score=87.66  Aligned_cols=45  Identities=20%  Similarity=0.199  Sum_probs=39.9

Q ss_pred             CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      +..++++++|++++|  ..++|+|+||||||||++.|+|...+.+|.
T Consensus        33 ~~~vL~~isl~i~~G--e~~~liG~NGsGKSTLlk~l~Gl~~p~~G~   77 (279)
T 2ihy_A           33 GKTILKKISWQIAKG--DKWILYGLNGAGKTTLLNILNAYEPATSGT   77 (279)
T ss_dssp             TEEEEEEEEEEEETT--CEEEEECCTTSSHHHHHHHHTTSSCCSEEE
T ss_pred             CEEEEEeeeEEEcCC--CEEEEECCCCCcHHHHHHHHhCCCCCCCeE
Confidence            456889999999999  999999999999999999999987766543

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=98.82  E-value=8.2e-10  Score=84.21  Aligned_cols=43  Identities=16%  Similarity=0.098  Sum_probs=38.5

Q ss_pred             CccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            5 RIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      .++++++|.+++|  ..++|+|+||||||||++.|+|...+.+|.
T Consensus        23 ~il~~vsl~i~~G--e~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~   65 (214)
T 1sgw_A           23 PVLERITMTIEKG--NVVNFHGPNGIGKTTLLKTISTYLKPLKGE   65 (214)
T ss_dssp             EEEEEEEEEEETT--CCEEEECCTTSSHHHHHHHHTTSSCCSEEE
T ss_pred             eEEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCeE
Confidence            6789999999999  899999999999999999999987655543

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=98.81  E-value=1.9e-09  Score=85.22  Aligned_cols=44  Identities=18%  Similarity=0.200  Sum_probs=39.6

Q ss_pred             CCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            4 SRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      ..++++++|.+++|  ..++|+|+||||||||++.|+|...+.+|.
T Consensus        32 ~~vl~~vsl~i~~G--e~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~   75 (271)
T 2ixe_A           32 VQVLQGLTFTLYPG--KVTALVGPNGSGKSTVAALLQNLYQPTGGK   75 (271)
T ss_dssp             SCCEEEEEEEECTT--CEEEEECSTTSSHHHHHHHHTTSSCCSEEE
T ss_pred             ceeeEeeEEEECCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCCE
Confidence            56899999999999  999999999999999999999987665543

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=98.79  E-value=1.3e-08  Score=86.91  Aligned_cols=114  Identities=15%  Similarity=0.142  Sum_probs=65.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHh------CCCCccccCCC-CCcc----------eeEEEEEE----------------
Q 036363           17 NGVRTVVLVGHTGNGKSATGNSIL------GRRAFKSRASS-SGVT----------STCEMHRT----------------   63 (240)
Q Consensus        17 ~~~~~i~lvG~~g~GKSTlin~l~------g~~~~~~~~~~-~~~t----------~~~~~~~~----------------   63 (240)
                      ....+|+++|++|+||||+++.|+      |.........+ .+..          .....+..                
T Consensus        99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~  178 (504)
T 2j37_W           99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK  178 (504)
T ss_dssp             S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence            345899999999999999999998      65321111000 0000          00000110                


Q ss_pred             -EEeCCcEEEEEeCCCCCCCCCCCc-C-------CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCC
Q 036363           64 -VLKDGQVVNVIDTPGLFDFSAGSE-F-------DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGR  134 (240)
Q Consensus        64 -~~~~~~~~~l~DtpG~~~~~~~~~-~-------~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~  134 (240)
                       .+ .+..+.|+||||......... .       ..+|.+++|+|+....+  .......+.+.     .+...+|+||+
T Consensus       179 ~~~-~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~--~~~~a~~~~~~-----~~i~gvVlNK~  250 (504)
T 2j37_W          179 FKN-ENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQA--CEAQAKAFKDK-----VDVASVIVTKL  250 (504)
T ss_dssp             HHH-TTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTT--HHHHHHHHHHH-----HCCCCEEEECT
T ss_pred             HHH-CCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEecccccc--HHHHHHHHHhh-----cCceEEEEeCC
Confidence             11 456789999999875422100 0       36889999999985543  33333333321     12248899999


Q ss_pred             CCCC
Q 036363          135 DELE  138 (240)
Q Consensus       135 D~~~  138 (240)
                      |...
T Consensus       251 D~~~  254 (504)
T 2j37_W          251 DGHA  254 (504)
T ss_dssp             TSCC
T ss_pred             cccc
Confidence            9653

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=98.77  E-value=6.8e-09  Score=90.81  Aligned_cols=44  Identities=27%  Similarity=0.366  Sum_probs=39.7

Q ss_pred             CCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            4 SRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      ..++++++|++++|  ..++++|+||+|||||++.|+|...+.+|.
T Consensus       356 ~~~l~~i~l~i~~G--~~~~ivG~sGsGKSTll~~l~g~~~p~~G~  399 (582)
T 3b5x_A          356 KPALSHVSFSIPQG--KTVALVGRSGSGKSTIANLFTRFYDVDSGS  399 (582)
T ss_pred             ccccccceEEECCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCCE
Confidence            56899999999999  999999999999999999999987666554

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=98.77  E-value=2.1e-09  Score=84.77  Aligned_cols=44  Identities=20%  Similarity=0.268  Sum_probs=39.4

Q ss_pred             CCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            4 SRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      ..++++++|++++|  ..++|+|+||||||||++.|+|...+.+|.
T Consensus        20 ~~vl~~vsl~i~~G--e~~~liG~nGsGKSTLl~~i~Gl~~p~~G~   63 (266)
T 2yz2_A           20 KKALENVSLVINEG--ECLLVAGNTGSGKSTLLQIVAGLIEPTSGD   63 (266)
T ss_dssp             EEEEEEEEEEECTT--CEEEEECSTTSSHHHHHHHHTTSSCCSEEE
T ss_pred             cceeeeeEEEEcCC--CEEEEECCCCCcHHHHHHHHhCCCCCCCcE
Confidence            35899999999999  999999999999999999999987765554

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=98.75  E-value=1.7e-09  Score=84.53  Aligned_cols=38  Identities=32%  Similarity=0.531  Sum_probs=35.5

Q ss_pred             CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCC
Q 036363            3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGR   42 (240)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~   42 (240)
                      +..++++++|++++|  ..++|+|+||||||||++.|+|.
T Consensus        15 ~~~vl~~vsl~i~~G--e~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           15 GETILKGVNLVVPKG--EVHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             TEEEEEEEEEEEETT--CEEEEECSTTSSHHHHHHHHHTC
T ss_pred             CEEEEeceEEEEcCC--CEEEEECCCCCCHHHHHHHHhCC
Confidence            456889999999999  99999999999999999999997

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=98.75  E-value=2.3e-09  Score=84.57  Aligned_cols=39  Identities=23%  Similarity=0.372  Sum_probs=36.0

Q ss_pred             CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCC
Q 036363            3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRR   43 (240)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~   43 (240)
                      +..++++++|++++|  ..++|+|+||||||||++.|+|..
T Consensus        32 ~~~vl~~vsl~i~~G--e~~~l~G~NGsGKSTLlk~l~Gl~   70 (267)
T 2zu0_C           32 DKAILRGLSLDVHPG--EVHAIMGPNGSGKSTLSATLAGRE   70 (267)
T ss_dssp             TEEEEEEEEEEECTT--CEEEEECCTTSSHHHHHHHHHTCT
T ss_pred             CEEEEEeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCC
Confidence            456889999999999  999999999999999999999973

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=98.75  E-value=3.2e-09  Score=89.85  Aligned_cols=145  Identities=12%  Similarity=0.121  Sum_probs=84.0

Q ss_pred             cCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCC--Ccc---------------eeEEEEEEEE----
Q 036363            7 DDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSS--GVT---------------STCEMHRTVL----   65 (240)
Q Consensus         7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~--~~t---------------~~~~~~~~~~----   65 (240)
                      .++++|.+..|  ..|+|+|+||||||||++.|+|.....++....  +.+               ..+.+.....    
T Consensus       283 ~~~Isl~i~~G--eVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p  360 (503)
T 2yhs_A          283 DEPLNVEGKAP--FVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADS  360 (503)
T ss_dssp             BCCCCCCSCTT--EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCH
T ss_pred             CCCceeeccCC--eEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCH
Confidence            46788988888  999999999999999999998764332222111  000               0011111100    


Q ss_pred             ------------eCCcEEEEEeCCCCCCCCCCCcC--------------CCceEEEEEEECCCCCCHHHHHHHHHHHHHh
Q 036363           66 ------------KDGQVVNVIDTPGLFDFSAGSEF--------------DEIHAALVVFSVRSRFSQEEEATLHSLQTLF  119 (240)
Q Consensus        66 ------------~~~~~~~l~DtpG~~~~~~~~~~--------------~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~  119 (240)
                                  ..+..+.++||+|........-.              ..++-+++|+|++.+  ......++.+.+.+
T Consensus       361 ~~tV~e~l~~a~~~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattG--q~al~~ak~f~~~~  438 (503)
T 2yhs_A          361 ASVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTG--QNAVSQAKLFHEAV  438 (503)
T ss_dssp             HHHHHHHHHHHHHTTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGT--HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhcCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCccc--HHHHHHHHHHHhhc
Confidence                        02346789999998644221100              237788889988733  23334444444433


Q ss_pred             CCCcCCeEEEEEeCCCCCCCCcccHHHHhcccCCchHHHHHHHhCCcEEEEeCC
Q 036363          120 GKNCFDYMIVVFSGRDELEANDETLEDYLGRECPKPLKEILHLFDNRCVLFDNK  173 (240)
Q Consensus       120 ~~~~~~~~i~v~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (240)
                      +     ...+|+||.|....             ...+..++...+.++.++...
T Consensus       439 ~-----itgvIlTKLD~tak-------------gG~~lsi~~~~~~PI~fig~G  474 (503)
T 2yhs_A          439 G-----LTGITLTKLDGTAK-------------GGVIFSVADQFGIPIRYIGVG  474 (503)
T ss_dssp             C-----CSEEEEECGGGCSC-------------CTHHHHHHHHHCCCEEEEECS
T ss_pred             C-----CCEEEEEcCCCccc-------------ccHHHHHHHHHCCCEEEEecC
Confidence            3     25689999995322             223445555556666655544

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=98.74  E-value=2.2e-09  Score=86.14  Aligned_cols=45  Identities=27%  Similarity=0.324  Sum_probs=39.7

Q ss_pred             CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      +..++++++|++++|  ..++|+|+||||||||++.|+|...+.+|.
T Consensus        66 ~~~vL~~isl~i~~G--e~vaivG~sGsGKSTLl~ll~gl~~p~~G~  110 (306)
T 3nh6_A           66 GRETLQDVSFTVMPG--QTLALVGPSGAGKSTILRLLFRFYDISSGC  110 (306)
T ss_dssp             TCEEEEEEEEEECTT--CEEEEESSSCHHHHHHHHHHTTSSCCSEEE
T ss_pred             CCceeeeeeEEEcCC--CEEEEECCCCchHHHHHHHHHcCCCCCCcE
Confidence            456889999999999  999999999999999999999987665543

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=98.74  E-value=1e-09  Score=95.83  Aligned_cols=44  Identities=32%  Similarity=0.302  Sum_probs=39.4

Q ss_pred             CCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            4 SRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      ..++++++|++++|  ..++++|+||||||||++.|+|...+.+|.
T Consensus       354 ~~~l~~isl~i~~G--~~~~ivG~sGsGKSTll~~l~g~~~p~~G~  397 (578)
T 4a82_A          354 APILKDINLSIEKG--ETVAFVGMSGGGKSTLINLIPRFYDVTSGQ  397 (578)
T ss_dssp             CCSEEEEEEEECTT--CEEEEECSTTSSHHHHHTTTTTSSCCSEEE
T ss_pred             CcceeeeEEEECCC--CEEEEECCCCChHHHHHHHHhcCCCCCCcE
Confidence            46889999999999  999999999999999999999987665543

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=98.74  E-value=7.3e-09  Score=83.12  Aligned_cols=144  Identities=13%  Similarity=0.131  Sum_probs=82.6

Q ss_pred             CCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCC------CCc-------c----eeEEEEEEEE-----
Q 036363            8 DDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASS------SGV-------T----STCEMHRTVL-----   65 (240)
Q Consensus         8 ~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~------~~~-------t----~~~~~~~~~~-----   65 (240)
                      .+++|.+.+|  ..++++|+||||||||++.|+|...+.++...      ...       .    ..+.+..+..     
T Consensus        91 ~~l~~~~~~g--~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~  168 (302)
T 3b9q_A           91 TELQLGFRKP--AVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKA  168 (302)
T ss_dssp             CSCCCCSSSC--EEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCH
T ss_pred             cccccccCCC--cEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCH
Confidence            4678888888  99999999999999999999886443332210      000       0    0111111100     


Q ss_pred             ------------eCCcEEEEEeCCCCCCCCCCCcC--------------CCceEEEEEEECCCCCCHHHHHHHHHHHHHh
Q 036363           66 ------------KDGQVVNVIDTPGLFDFSAGSEF--------------DEIHAALVVFSVRSRFSQEEEATLHSLQTLF  119 (240)
Q Consensus        66 ------------~~~~~~~l~DtpG~~~~~~~~~~--------------~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~  119 (240)
                                  ..+....++||.|........-.              ..|+-+++++|++..++...  .+..+.+..
T Consensus       169 ~~~v~e~l~~~~~~~~d~~lldt~gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDptsglD~~~--~~~~~~~~~  246 (302)
T 3b9q_A          169 ATVLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLP--QAREFNEVV  246 (302)
T ss_dssp             HHHHHHHHHHHHHTTCSEEEECCCCCSSCCHHHHHHHHHHHHHHHTTSTTCCSEEEEEEEGGGGGGGHH--HHHHHHHHT
T ss_pred             HHHHHHHHHHHHHcCCcchHHhcCCCCcchhHHHHHHHHHHHHHHHhhccCCCeeEEEEeCCCCcCHHH--HHHHHHHhc
Confidence                        01234568999998654321100              45776777888775554442  233343322


Q ss_pred             CCCcCCeEEEEEeCCCCCCCCcccHHHHhcccCCchHHHHHHHhCCcEEEEeCC
Q 036363          120 GKNCFDYMIVVFSGRDELEANDETLEDYLGRECPKPLKEILHLFDNRCVLFDNK  173 (240)
Q Consensus       120 ~~~~~~~~i~v~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (240)
                      +     ..++++||.|....             ....-.+....+.++.++...
T Consensus       247 g-----~t~iiiThlD~~~~-------------~g~~l~~~~~~~~pi~~i~~G  282 (302)
T 3b9q_A          247 G-----ITGLILTKLDGSAR-------------GGCVVSVVEELGIPVKFIGVG  282 (302)
T ss_dssp             C-----CCEEEEECCSSCSC-------------THHHHHHHHHHCCCEEEEECS
T ss_pred             C-----CCEEEEeCCCCCCc-------------cChheehHHHHCCCEEEEeCC
Confidence            2     36788999884422             122344555667777777654

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.73  E-value=7.4e-09  Score=81.43  Aligned_cols=60  Identities=30%  Similarity=0.421  Sum_probs=38.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCC
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSA   84 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~   84 (240)
                      .+++++|.+|+|||||+|+|+|......+.. .+.|......  .  .+..+.+|||||+.....
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~-~g~T~~~~~~--~--~~~~~~l~DtpG~~~~~~  159 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQ-PGITKGIQWF--S--LENGVKILDTPGILYKNI  159 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEE--E--CTTSCEEESSCEECCCCC
T ss_pred             hheEEeCCCCCCHHHHHHHHhcccccccCCC-CCCccceEEE--E--eCCCEEEEECCCcccCcC
Confidence            4899999999999999999999765433332 3444433211  1  345788999999987643

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=98.73  E-value=2.6e-09  Score=93.66  Aligned_cols=44  Identities=23%  Similarity=0.294  Sum_probs=39.5

Q ss_pred             CCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            4 SRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      ..++++++|++++|  ..++++|+||||||||++.|+|...+.+|.
T Consensus       368 ~~~l~~isl~i~~G--~~~~ivG~sGsGKSTll~~l~g~~~p~~G~  411 (598)
T 3qf4_B          368 KPVLKDITFHIKPG--QKVALVGPTGSGKTTIVNLLMRFYDVDRGQ  411 (598)
T ss_dssp             SCSCCSEEEECCTT--CEEEEECCTTSSTTHHHHHHTTSSCCSEEE
T ss_pred             CccccceEEEEcCC--CEEEEECCCCCcHHHHHHHHhcCcCCCCeE
Confidence            46899999999999  999999999999999999999987665543

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=98.73  E-value=4.1e-09  Score=86.42  Aligned_cols=46  Identities=24%  Similarity=0.256  Sum_probs=40.4

Q ss_pred             CCCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            2 GGSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      |+..++++++|++++|  ..++|+|+||||||||+++|+|...+.+|.
T Consensus        14 ~~~~vl~~vsl~i~~G--e~~~llGpnGsGKSTLLr~iaGl~~p~~G~   59 (362)
T 2it1_A           14 GNFTALNNINLKIKDG--EFMALLGPSGSGKSTLLYTIAGIYKPTSGK   59 (362)
T ss_dssp             SSSEEEEEEEEEECTT--CEEEEECCTTSSHHHHHHHHHTSSCCSEEE
T ss_pred             CCEEEEEeeEEEECCC--CEEEEECCCCchHHHHHHHHhcCCCCCceE
Confidence            3456889999999999  999999999999999999999987765543

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=98.72  E-value=4e-09  Score=84.54  Aligned_cols=65  Identities=26%  Similarity=0.304  Sum_probs=37.7

Q ss_pred             ccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCC------CcceeEEEEEEEEeCCcEEEEEeCCCCCCCC
Q 036363           12 LTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSS------GVTSTCEMHRTVLKDGQVVNVIDTPGLFDFS   83 (240)
Q Consensus        12 ~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~------~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~   83 (240)
                      +.+.+|  ..++|+|+||+|||||+|+|+|...+.++....      .+|....  .... .  ..+++||||+..+.
T Consensus       168 ~~~~~G--~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~--~~~~-~--~g~v~dtpg~~~~~  238 (307)
T 1t9h_A          168 IPHFQD--KTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVE--LIHT-S--GGLVADTPGFSSLE  238 (307)
T ss_dssp             GGGGTT--SEEEEEESHHHHHHHHHHHHCC-------------------CCCCC--EEEE-T--TEEEESSCSCSSCC
T ss_pred             HhhcCC--CEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHH--Hhhc-C--CEEEecCCCccccc
Confidence            445567  899999999999999999999987665554432      1222111  1111 2  35799999987753

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=98.72  E-value=2.2e-09  Score=77.93  Aligned_cols=43  Identities=19%  Similarity=0.109  Sum_probs=36.8

Q ss_pred             CccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCC
Q 036363            5 RIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRAS   50 (240)
Q Consensus         5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~   50 (240)
                      .++++++|.+++|  ..++|+|+||||||||++.|+|.. +.++..
T Consensus        21 ~~l~~vsl~i~~G--e~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V   63 (158)
T 1htw_A           21 FAEILLKLHTEKA--IMVYLNGDLGAGKTTLTRGMLQGI-GHQGNV   63 (158)
T ss_dssp             HHHHHHHHCCSSC--EEEEEECSTTSSHHHHHHHHHHHT-TCCSCC
T ss_pred             HHHhccccccCCC--CEEEEECCCCCCHHHHHHHHHHhC-CCCCeE
Confidence            3567889999999  999999999999999999999977 555543

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=98.71  E-value=4.1e-09  Score=82.25  Aligned_cols=40  Identities=23%  Similarity=0.147  Sum_probs=36.7

Q ss_pred             CccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCcc
Q 036363            5 RIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFK   46 (240)
Q Consensus         5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~   46 (240)
                      .++++++|.+++|  ..++|+|+||||||||++.|+|...+.
T Consensus        14 ~vl~~vsl~i~~G--e~~~liG~NGsGKSTLlk~l~Gl~~p~   53 (249)
T 2qi9_C           14 TRLGPLSGEVRAG--EILHLVGPNGAGKSTLLARMAGMTSGK   53 (249)
T ss_dssp             TTEEEEEEEEETT--CEEEEECCTTSSHHHHHHHHTTSSCCE
T ss_pred             EEEeeeEEEEcCC--CEEEEECCCCCcHHHHHHHHhCCCCCC
Confidence            4688999999999  999999999999999999999987655

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=98.71  E-value=5e-09  Score=83.52  Aligned_cols=44  Identities=18%  Similarity=0.257  Sum_probs=39.0

Q ss_pred             CCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            4 SRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      ..++++++|.+++|  ..++|+|+||||||||++.|+|...+.+|.
T Consensus        51 ~~vl~~isl~i~~G--e~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~   94 (290)
T 2bbs_A           51 TPVLKDINFKIERG--QLLAVAGSTGAGKTSLLMMIMGELEPSEGK   94 (290)
T ss_dssp             CCSEEEEEEEECTT--CEEEEEESTTSSHHHHHHHHTTSSCEEEEE
T ss_pred             ceEEEeeEEEEcCC--CEEEEECCCCCcHHHHHHHHhcCCCCCCcE
Confidence            46789999999999  999999999999999999999987665543

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=98.70  E-value=2.2e-09  Score=93.95  Aligned_cols=45  Identities=20%  Similarity=0.189  Sum_probs=39.8

Q ss_pred             CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      ...++++++|++++|  ..++++|+||||||||++.|+|...+.+|.
T Consensus       355 ~~~~l~~isl~i~~G--e~~~ivG~sGsGKSTll~~l~g~~~~~~G~  399 (587)
T 3qf4_A          355 TDPVLSGVNFSVKPG--SLVAVLGETGSGKSTLMNLIPRLIDPERGR  399 (587)
T ss_dssp             SCCSEEEEEEEECTT--CEEEEECSSSSSHHHHHHTTTTSSCCSEEE
T ss_pred             CCcceeceEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCccCCCcE
Confidence            356899999999999  999999999999999999999987665543

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=98.68  E-value=1.3e-08  Score=83.29  Aligned_cols=144  Identities=13%  Similarity=0.136  Sum_probs=82.3

Q ss_pred             CCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCC-Cc-c---------------eeEEEEEEEEe----
Q 036363            8 DDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSS-GV-T---------------STCEMHRTVLK----   66 (240)
Q Consensus         8 ~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~-~~-t---------------~~~~~~~~~~~----   66 (240)
                      .+++|.+.++  ..|+++|+||||||||++.|+|...+.++.... +. +               ..+.+..+...    
T Consensus       148 ~~l~l~~~~g--~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p  225 (359)
T 2og2_A          148 TELQLGFRKP--AVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKA  225 (359)
T ss_dssp             CSCCCCSSSS--EEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCH
T ss_pred             CCcceecCCC--eEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccCh
Confidence            4577888888  999999999999999999998864433221100 00 0               01111111000    


Q ss_pred             -------------CCcEEEEEeCCCCCCCCCCCcC--------------CCceEEEEEEECCCCCCHHHHHHHHHHHHHh
Q 036363           67 -------------DGQVVNVIDTPGLFDFSAGSEF--------------DEIHAALVVFSVRSRFSQEEEATLHSLQTLF  119 (240)
Q Consensus        67 -------------~~~~~~l~DtpG~~~~~~~~~~--------------~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~  119 (240)
                                   .+....++||.|........-.              ..|+-+++|+|++.+++...  .+..+.+..
T Consensus       226 ~~tv~e~l~~~~~~~~d~~lldt~Gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDpttglD~~~--~~~~~~~~~  303 (359)
T 2og2_A          226 ATVLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLP--QAREFNEVV  303 (359)
T ss_dssp             HHHHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSTTCCSEEEEEEEGGGGGGGHH--HHHHHHHHT
T ss_pred             hhhHHHHHHHHHhCCCHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCCCCHHH--HHHHHHHhc
Confidence                         1234578999998654321100              45777788888775554432  233333322


Q ss_pred             CCCcCCeEEEEEeCCCCCCCCcccHHHHhcccCCchHHHHHHHhCCcEEEEeCC
Q 036363          120 GKNCFDYMIVVFSGRDELEANDETLEDYLGRECPKPLKEILHLFDNRCVLFDNK  173 (240)
Q Consensus       120 ~~~~~~~~i~v~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (240)
                      +     ..++++||.|....             .-..-.+....+.++.++...
T Consensus       304 g-----~t~iiiThlD~~~~-------------gG~~lsi~~~~~~pI~~ig~G  339 (359)
T 2og2_A          304 G-----ITGLILTKLDGSAR-------------GGCVVSVVEELGIPVKFIGVG  339 (359)
T ss_dssp             C-----CCEEEEESCTTCSC-------------THHHHHHHHHHCCCEEEEECS
T ss_pred             C-----CeEEEEecCccccc-------------ccHHHHHHHHhCCCEEEEeCC
Confidence            2     36889999885422             122334455567777766654

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=98.68  E-value=7.6e-09  Score=81.29  Aligned_cols=40  Identities=33%  Similarity=0.390  Sum_probs=36.7

Q ss_pred             CCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCc
Q 036363            4 SRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAF   45 (240)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~   45 (240)
                      ..++++++|.+++|  ..++|+|+||||||||++.|+|...+
T Consensus        33 ~~vl~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~~   72 (260)
T 2ghi_A           33 HRTLKSINFFIPSG--TTCALVGHTGSGKSTIAKLLYRFYDA   72 (260)
T ss_dssp             SCSEEEEEEEECTT--CEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred             CceeEeeEEEECCC--CEEEEECCCCCCHHHHHHHHhccCCC
Confidence            35899999999999  99999999999999999999998653

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=98.67  E-value=5.9e-09  Score=85.08  Aligned_cols=42  Identities=29%  Similarity=0.259  Sum_probs=38.3

Q ss_pred             ccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            6 IDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      ++++++|++++|  ..++|+|+||||||||+++|+|...+.+|.
T Consensus        15 ~l~~vsl~i~~G--e~~~llGpnGsGKSTLLr~iaGl~~p~~G~   56 (348)
T 3d31_A           15 SLDNLSLKVESG--EYFVILGPTGAGKTLFLELIAGFHVPDSGR   56 (348)
T ss_dssp             EEEEEEEEECTT--CEEEEECCCTHHHHHHHHHHHTSSCCSEEE
T ss_pred             EEeeeEEEEcCC--CEEEEECCCCccHHHHHHHHHcCCCCCCcE
Confidence            789999999999  899999999999999999999987766553

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=98.65  E-value=5.8e-09  Score=82.03  Aligned_cols=42  Identities=21%  Similarity=0.237  Sum_probs=37.7

Q ss_pred             CCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            4 SRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      ..++++++|+++ |  ..++|+|+||||||||++.|+|.. +.+|.
T Consensus        18 ~~il~~vsl~i~-G--e~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~   59 (263)
T 2pjz_A           18 RFSLENINLEVN-G--EKVIILGPNGSGKTTLLRAISGLL-PYSGN   59 (263)
T ss_dssp             EEEEEEEEEEEC-S--SEEEEECCTTSSHHHHHHHHTTSS-CCEEE
T ss_pred             ceeEEeeeEEEC-C--EEEEEECCCCCCHHHHHHHHhCCC-CCCcE
Confidence            468899999999 9  999999999999999999999987 66554

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=98.64  E-value=1.1e-08  Score=78.18  Aligned_cols=24  Identities=25%  Similarity=0.390  Sum_probs=21.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCC
Q 036363           19 VRTVVLVGHTGNGKSATGNSILGR   42 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g~   42 (240)
                      ..+|+++|++|+|||||++.|++.
T Consensus        30 ~~~i~i~G~~g~GKTTl~~~l~~~   53 (221)
T 2wsm_A           30 TVAVNIMGAIGSGKTLLIERTIER   53 (221)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHH
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHH
Confidence            479999999999999999999864

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=98.61  E-value=1.4e-08  Score=79.66  Aligned_cols=68  Identities=12%  Similarity=-0.045  Sum_probs=39.4

Q ss_pred             cEEEEEeCCCCCCCCCCC--------cCCCceEEEEEEECCCCCCHHHHH-HHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           69 QVVNVIDTPGLFDFSAGS--------EFDEIHAALVVFSVRSRFSQEEEA-TLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        69 ~~~~l~DtpG~~~~~~~~--------~~~~~~~~l~v~~~~~~~~~~~~~-~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      ..+.+|||||+.+.....        .... +++++++|+....+..+.. .+....... .....|+++|+||+|...
T Consensus       109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~iv~NK~D~~~  185 (262)
T 1yrb_A          109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLID-LRLGATTIPALNKVDLLS  185 (262)
T ss_dssp             CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHH-HHHTSCEEEEECCGGGCC
T ss_pred             CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHh-cccCCCeEEEEecccccc
Confidence            368899999987643211        1134 7888999887555554422 111111111 111256899999999654

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=98.61  E-value=1.4e-08  Score=84.01  Aligned_cols=41  Identities=29%  Similarity=0.432  Sum_probs=37.7

Q ss_pred             CCCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCC
Q 036363            2 GGSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRA   44 (240)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~   44 (240)
                      |+..++++++|++++|  ..++|+|+||||||||+++|+|...
T Consensus        32 ~~~~~L~~vsl~i~~G--e~~~llGpsGsGKSTLLr~iaGl~~   72 (390)
T 3gd7_A           32 GGNAILENISFSISPG--QRVGLLGRTGSGKSTLLSAFLRLLN   72 (390)
T ss_dssp             SSCCSEEEEEEEECTT--CEEEEEESTTSSHHHHHHHHHTCSE
T ss_pred             CCeEEeeceeEEEcCC--CEEEEECCCCChHHHHHHHHhCCCC
Confidence            3467899999999999  9999999999999999999999865

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=98.60  E-value=4.1e-08  Score=78.85  Aligned_cols=60  Identities=25%  Similarity=0.340  Sum_probs=38.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCC----CcceeEEEEEEEEeCCcEEEEEeCCCCCCC
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSS----GVTSTCEMHRTVLKDGQVVNVIDTPGLFDF   82 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~   82 (240)
                      ..++++|+||+|||||+|+|+ ...+.++....    |...+........  ....+++||||+..+
T Consensus       166 ~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~--~~~g~v~d~pg~~~~  229 (302)
T 2yv5_A          166 FICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPF--GKGSFVGDTPGFSKV  229 (302)
T ss_dssp             CEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEE--TTTEEEESSCCCSSC
T ss_pred             cEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEc--CCCcEEEECcCcCcC
Confidence            789999999999999999999 76666655432    1111111111111  234579999998754

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=98.59  E-value=1.4e-08  Score=77.69  Aligned_cols=37  Identities=16%  Similarity=0.087  Sum_probs=24.6

Q ss_pred             CccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCC
Q 036363            5 RIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRR   43 (240)
Q Consensus         5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~   43 (240)
                      ..+++++|.+++|  ..++|+||||||||||++.|+|..
T Consensus        11 ~~l~~isl~i~~G--~~~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           11 SSGLVPRGSMNNI--YPLVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             -----------CC--CCEEEECSTTSSHHHHHHHHHHHS
T ss_pred             ccccCCceecCCC--CEEEEECCCCCCHHHHHHHHHhhC
Confidence            3678999999999  899999999999999999999865

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=98.59  E-value=2e-08  Score=78.23  Aligned_cols=39  Identities=21%  Similarity=0.165  Sum_probs=24.7

Q ss_pred             CCCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCC
Q 036363            2 GGSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGR   42 (240)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~   42 (240)
                      |+..++++++|+++++  ..|+|+|++|||||||++.|.|.
T Consensus        10 ~~~~~l~~isl~i~~g--~iigI~G~~GsGKSTl~k~L~~~   48 (245)
T 2jeo_A           10 GVDLGTENLYFQSMRP--FLIGVSGGTASGKSTVCEKIMEL   48 (245)
T ss_dssp             -------------CCS--EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCceeecceeccCCCC--EEEEEECCCCCCHHHHHHHHHHH
Confidence            5667899999999999  99999999999999999999874

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=98.57  E-value=1.5e-07  Score=76.00  Aligned_cols=79  Identities=10%  Similarity=0.095  Sum_probs=52.0

Q ss_pred             EEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEEEEEEECC-------CCCCHHH-HHHHHHHHHHhCCC--cCC
Q 036363           58 CEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAALVVFSVR-------SRFSQEE-EATLHSLQTLFGKN--CFD  125 (240)
Q Consensus        58 ~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~v~~~~-------~~~~~~~-~~~l~~l~~~~~~~--~~~  125 (240)
                      ........ ++..+.+|||.|...+...+..  .+++++++|++++       +.-+... ...+.++...+...  ...
T Consensus       157 i~~~~~~~-~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~  235 (327)
T 3ohm_A          157 IIEYPFDL-QSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNS  235 (327)
T ss_dssp             EEEEEEEE-TTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTC
T ss_pred             EEEEEEEe-eceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCc
Confidence            33444455 6778999999999888777766  9999999999765       1111111 22333334333321  236


Q ss_pred             eEEEEEeCCCCC
Q 036363          126 YMIVVFSGRDEL  137 (240)
Q Consensus       126 ~~i~v~~~~D~~  137 (240)
                      |+++++||+|..
T Consensus       236 ~iiL~~NK~DL~  247 (327)
T 3ohm_A          236 SVILFLNKKDLL  247 (327)
T ss_dssp             EEEEEEECHHHH
T ss_pred             eEEEEEECchhh
Confidence            899999999954

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=98.54  E-value=1.2e-07  Score=77.69  Aligned_cols=76  Identities=7%  Similarity=0.082  Sum_probs=51.7

Q ss_pred             EEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEEEEEEECCCC----------CCHHHHHHHHHHHHHhCCC--cC
Q 036363           59 EMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAALVVFSVRSR----------FSQEEEATLHSLQTLFGKN--CF  124 (240)
Q Consensus        59 ~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~v~~~~~~----------~~~~~~~~l~~l~~~~~~~--~~  124 (240)
                      ....+.+ ++..+.+|||+|...+...+..  .+++++|+|+++++.          -+..  ..+.++...+...  ..
T Consensus       184 ~~~~~~~-~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~--e~~~~~~~i~~~~~~~~  260 (353)
T 1cip_A          184 VETHFTF-KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMH--ESMKLFDSICNNKWFTD  260 (353)
T ss_dssp             EEEEEEE-TTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHH--HHHHHHHHHHTCGGGTT
T ss_pred             EEEEEee-CCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHH--HHHHHHHHHHcCccccC
Confidence            3344445 6778999999999888777666  999999999999852          1222  2233333333321  23


Q ss_pred             CeEEEEEeCCCCC
Q 036363          125 DYMIVVFSGRDEL  137 (240)
Q Consensus       125 ~~~i~v~~~~D~~  137 (240)
                      .|+++++||.|..
T Consensus       261 ~piiLv~NK~DL~  273 (353)
T 1cip_A          261 TSIILFLNKKDLF  273 (353)
T ss_dssp             SEEEEEEECHHHH
T ss_pred             CcEEEEEECcCch
Confidence            6899999999954

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=98.54  E-value=6.9e-08  Score=77.49  Aligned_cols=136  Identities=14%  Similarity=0.071  Sum_probs=75.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCC------CC--Cc---------ceeEEEEEEEE---------------
Q 036363           18 GVRTVVLVGHTGNGKSATGNSILGRRAFKSRAS------SS--GV---------TSTCEMHRTVL---------------   65 (240)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~------~~--~~---------t~~~~~~~~~~---------------   65 (240)
                      +...|+++|+||||||||++.|+|...+.++..      ..  +.         ...+.+..+..               
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~  180 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM  180 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence            348999999999999999999987543332211      00  00         00011111100               


Q ss_pred             -eCCcEEEEEeCCCCCCCCCCCcC--------------CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEE
Q 036363           66 -KDGQVVNVIDTPGLFDFSAGSEF--------------DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVV  130 (240)
Q Consensus        66 -~~~~~~~l~DtpG~~~~~~~~~~--------------~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v  130 (240)
                       ..+....++||+|........-.              ..|+.+++++|+..+.  .....+..+.+..+     ..+++
T Consensus       181 ~~~~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~--~~~~~~~~~~~~~~-----~t~ii  253 (304)
T 1rj9_A          181 KARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQ--NGLEQAKKFHEAVG-----LTGVI  253 (304)
T ss_dssp             HHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCT--HHHHHHHHHHHHHC-----CSEEE
T ss_pred             HhCCCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHH--HHHHHHHHHHHHcC-----CcEEE
Confidence             01234678999998653221100              4588888899987443  22334444443333     36899


Q ss_pred             EeCCCCCCCCcccHHHHhcccCCchHHHHHHHhCCcEEEEeCC
Q 036363          131 FSGRDELEANDETLEDYLGRECPKPLKEILHLFDNRCVLFDNK  173 (240)
Q Consensus       131 ~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (240)
                      +||.|....             ...+-.+....+.++.++...
T Consensus       254 vTh~d~~a~-------------gg~~l~i~~~~~~pi~~ig~G  283 (304)
T 1rj9_A          254 VTKLDGTAK-------------GGVLIPIVRTLKVPIKFVGVG  283 (304)
T ss_dssp             EECTTSSCC-------------CTTHHHHHHHHCCCEEEEECS
T ss_pred             EECCccccc-------------ccHHHHHHHHHCCCeEEEeCC
Confidence            999985432             122334555566666666543

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=98.53  E-value=9.2e-07  Score=74.15  Aligned_cols=113  Identities=15%  Similarity=0.127  Sum_probs=63.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHh------CCCCcc--ccCCCCC---------cceeEEEEEEE---------------E
Q 036363           18 GVRTVVLVGHTGNGKSATGNSIL------GRRAFK--SRASSSG---------VTSTCEMHRTV---------------L   65 (240)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlin~l~------g~~~~~--~~~~~~~---------~t~~~~~~~~~---------------~   65 (240)
                      ++..|+++|++|+||||++..|+      |.....  ......+         .......+...               .
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a  178 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF  178 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence            34899999999999999999987      332210  0000000         00000000000               0


Q ss_pred             -eCCcEEEEEeCCCCCCCCCCCcC--------CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCC
Q 036363           66 -KDGQVVNVIDTPGLFDFSAGSEF--------DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDE  136 (240)
Q Consensus        66 -~~~~~~~l~DtpG~~~~~~~~~~--------~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~  136 (240)
                       ..+..+.++||||........-.        ..+|.+++|+|+..+.  ........+.+.     .+...+|+||+|.
T Consensus       179 ~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq--~a~~~a~~f~~~-----~~i~gVIlTKlD~  251 (443)
T 3dm5_A          179 KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQ--QAYNQALAFKEA-----TPIGSIIVTKLDG  251 (443)
T ss_dssp             HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGG--GHHHHHHHHHHS-----CTTEEEEEECCSS
T ss_pred             HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCch--hHHHHHHHHHhh-----CCCeEEEEECCCC
Confidence             02367889999997654321111        5678999999997432  222333333221     2446799999995


Q ss_pred             C
Q 036363          137 L  137 (240)
Q Consensus       137 ~  137 (240)
                      .
T Consensus       252 ~  252 (443)
T 3dm5_A          252 S  252 (443)
T ss_dssp             C
T ss_pred             c
Confidence            4

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=98.53  E-value=3.1e-07  Score=76.89  Aligned_cols=112  Identities=15%  Similarity=0.112  Sum_probs=62.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhC------CCCcc-c-cCC-------------CCCcceeEEEEE----------E-EE-
Q 036363           19 VRTVVLVGHTGNGKSATGNSILG------RRAFK-S-RAS-------------SSGVTSTCEMHR----------T-VL-   65 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g------~~~~~-~-~~~-------------~~~~t~~~~~~~----------~-~~-   65 (240)
                      +..|+++|++|+||||++..|+.      ....- . ...             ..+.........          . .. 
T Consensus        97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a~  176 (433)
T 3kl4_A           97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIFV  176 (433)
T ss_dssp             SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHTT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHHH
Confidence            48999999999999999999873      22100 0 000             000000000000          0 00 


Q ss_pred             eCCcEEEEEeCCCCCC--CCCCCcC--------CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCC
Q 036363           66 KDGQVVNVIDTPGLFD--FSAGSEF--------DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRD  135 (240)
Q Consensus        66 ~~~~~~~l~DtpG~~~--~~~~~~~--------~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D  135 (240)
                      ..+..+.++||||...  .....-.        ..++.+++|+|+....  ........+.+.+     ....+|+||+|
T Consensus       177 ~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq--~a~~~a~~f~~~~-----~~~gVIlTKlD  249 (433)
T 3kl4_A          177 KNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQ--KAYDLASRFHQAS-----PIGSVIITKMD  249 (433)
T ss_dssp             TTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGG--GGHHHHHHHHHHC-----SSEEEEEECGG
T ss_pred             hcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccch--HHHHHHHHHhccc-----CCcEEEEeccc
Confidence            0255788999999765  2211101        4568899999997432  2233334443332     34789999999


Q ss_pred             CC
Q 036363          136 EL  137 (240)
Q Consensus       136 ~~  137 (240)
                      ..
T Consensus       250 ~~  251 (433)
T 3kl4_A          250 GT  251 (433)
T ss_dssp             GC
T ss_pred             cc
Confidence            44

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=98.50  E-value=4e-08  Score=78.93  Aligned_cols=59  Identities=27%  Similarity=0.309  Sum_probs=37.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCC----C--cceeEEEEEEEEeCCcEEEEEeCCCCCCC
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSS----G--VTSTCEMHRTVLKDGQVVNVIDTPGLFDF   82 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~----~--~t~~~~~~~~~~~~~~~~~l~DtpG~~~~   82 (240)
                      ..++++|+||+|||||+|+|+|...+.++....    +  .|....  ...  -....+++|+||+...
T Consensus       170 eiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~--~~~--~~~~g~v~q~p~~~~~  234 (301)
T 1u0l_A          170 KISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQ--LLK--FDFGGYVVDTPGFANL  234 (301)
T ss_dssp             SEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCC--EEE--CTTSCEEESSCSSTTC
T ss_pred             CeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeE--EEE--cCCCCEEEECcCCCcc
Confidence            789999999999999999999987766655432    1  111111  111  1234579999998765

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=98.50  E-value=6.5e-08  Score=78.39  Aligned_cols=134  Identities=12%  Similarity=0.060  Sum_probs=74.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCC-c----------------ceeEEEEEEEE----------------e
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSG-V----------------TSTCEMHRTVL----------------K   66 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~-~----------------t~~~~~~~~~~----------------~   66 (240)
                      ..++++|+||||||||++.|+|...+.++..... .                .....+.....                .
T Consensus       130 ~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~~~~  209 (328)
T 3e70_C          130 YVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQHAKA  209 (328)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHHHHh
Confidence            8999999999999999999997644333211000 0                00000110000                0


Q ss_pred             CCcEEEEEeCCCCCCCCCCCcC--------CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           67 DGQVVNVIDTPGLFDFSAGSEF--------DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        67 ~~~~~~l~DtpG~~~~~~~~~~--------~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      .+..+.++||+|..........        ..+|-.++++|+..+.  .....++.+.+.+     ...++++||.|...
T Consensus       210 ~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~--~~~~~~~~~~~~~-----~it~iilTKlD~~a  282 (328)
T 3e70_C          210 RGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN--AIVEQARQFNEAV-----KIDGIILTKLDADA  282 (328)
T ss_dssp             HTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT--HHHHHHHHHHHHS-----CCCEEEEECGGGCS
T ss_pred             ccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH--HHHHHHHHHHHhc-----CCCEEEEeCcCCcc
Confidence            1235678999998654332111        4577888899877442  2233334443332     23689999999532


Q ss_pred             CCcccHHHHhcccCCchHHHHHHHhCCcEEEEeCC
Q 036363          139 ANDETLEDYLGRECPKPLKEILHLFDNRCVLFDNK  173 (240)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (240)
                      ..             ..+..++...+.++.++...
T Consensus       283 ~~-------------G~~l~~~~~~~~pi~~i~~G  304 (328)
T 3e70_C          283 RG-------------GAALSISYVIDAPILFVGVG  304 (328)
T ss_dssp             CC-------------HHHHHHHHHHTCCEEEEECS
T ss_pred             ch-------------hHHHHHHHHHCCCEEEEeCC
Confidence            21             12334455566676666644

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=98.50  E-value=4.2e-08  Score=76.12  Aligned_cols=41  Identities=24%  Similarity=0.213  Sum_probs=34.8

Q ss_pred             ccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            6 IDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      ++++++|++++   ..++|+|+||||||||+++|+|...+.+|.
T Consensus        14 ~l~~isl~i~~---e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~   54 (240)
T 2onk_A           14 FRLNVDFEMGR---DYCVLLGPTGAGKSVFLELIAGIVKPDRGE   54 (240)
T ss_dssp             EEEEEEEEECS---SEEEEECCTTSSHHHHHHHHHTSSCCSEEE
T ss_pred             EEeeeEEEECC---EEEEEECCCCCCHHHHHHHHhCCCCCCceE
Confidence            37889999887   489999999999999999999987665543

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=98.45  E-value=2.5e-08  Score=94.40  Aligned_cols=44  Identities=30%  Similarity=0.256  Sum_probs=39.1

Q ss_pred             CCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            4 SRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      ..++++++|.+++|  ..++|+|+||||||||++.|+|...+.+|.
T Consensus       403 ~~vL~~isl~i~~G--~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~  446 (1284)
T 3g5u_A          403 VQILKGLNLKVKSG--QTVALVGNSGCGKSTTVQLMQRLYDPLDGM  446 (1284)
T ss_dssp             CCSEEEEEEEECTT--CEEEEECCSSSSHHHHHHHTTTSSCCSEEE
T ss_pred             CcceecceEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCeE
Confidence            35899999999999  999999999999999999999987665543

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=98.45  E-value=7.2e-07  Score=78.10  Aligned_cols=42  Identities=14%  Similarity=0.068  Sum_probs=35.1

Q ss_pred             cCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCC
Q 036363            7 DDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRAS   50 (240)
Q Consensus         7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~   50 (240)
                      ++.++|.+.+|  ..++|+|+||+|||||++.|+|...+.+|..
T Consensus       372 l~~~~~~v~~G--ei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I  413 (607)
T 3bk7_A          372 LEVEPGEIRKG--EVIGIVGPNGIGKTTFVKMLAGVEEPTEGKV  413 (607)
T ss_dssp             EEECCEEEETT--CEEEEECCTTSSHHHHHHHHHTSSCCSBSCC
T ss_pred             EEecccccCCC--CEEEEECCCCCCHHHHHHHHhcCCCCCceEE
Confidence            44556667888  8999999999999999999999887766654

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=98.45  E-value=2.1e-07  Score=75.47  Aligned_cols=77  Identities=14%  Similarity=0.023  Sum_probs=50.4

Q ss_pred             EEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEEEEEEECC----------CCCCHHH-HHHHHHHHHHhCCCcCC
Q 036363           59 EMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAALVVFSVR----------SRFSQEE-EATLHSLQTLFGKNCFD  125 (240)
Q Consensus        59 ~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~v~~~~----------~~~~~~~-~~~l~~l~~~~~~~~~~  125 (240)
                      ....... ++..+.+|||+|...+...+..  .+++++|+|++++          +.-+..+ ..++..+...- .....
T Consensus       152 ~~~~~~~-~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~-~~~~~  229 (340)
T 4fid_A          152 HEYDFVV-KDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNE-FLKGA  229 (340)
T ss_dssp             EEEEEES-SSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCG-GGTTS
T ss_pred             EEEEEEe-eeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhh-ccCCC
Confidence            3344444 6778999999999877665555  8999999999997          2222222 33444443311 11236


Q ss_pred             eEEEEEeCCCCC
Q 036363          126 YMIVVFSGRDEL  137 (240)
Q Consensus       126 ~~i~v~~~~D~~  137 (240)
                      |+++++||+|..
T Consensus       230 piiLv~NK~DL~  241 (340)
T 4fid_A          230 VKLIFLNKMDLF  241 (340)
T ss_dssp             EEEEEEECHHHH
T ss_pred             eEEEEEECchhh
Confidence            899999999954

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=98.44  E-value=8e-08  Score=84.02  Aligned_cols=44  Identities=27%  Similarity=0.352  Sum_probs=39.4

Q ss_pred             CCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            4 SRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      ..++++++|++++|  ..++++|+||||||||++.|+|...+.+|.
T Consensus       356 ~~~l~~v~~~i~~G--~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~  399 (582)
T 3b60_A          356 VPALRNINLKIPAG--KTVALVGRSGSGKSTIASLITRFYDIDEGH  399 (582)
T ss_dssp             CCSEEEEEEEECTT--CEEEEEECTTSSHHHHHHHHTTTTCCSEEE
T ss_pred             CccccceeEEEcCC--CEEEEECCCCCCHHHHHHHHhhccCCCCCe
Confidence            56899999999999  999999999999999999999987665543

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=98.44  E-value=4e-08  Score=78.66  Aligned_cols=36  Identities=19%  Similarity=0.164  Sum_probs=33.1

Q ss_pred             ccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCC
Q 036363            6 IDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRR   43 (240)
Q Consensus         6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~   43 (240)
                      ++++++|.+++|  ..++|+|+||+|||||++.|+|..
T Consensus       115 vL~~vsl~i~~G--e~vaIvGpsGsGKSTLl~lL~gl~  150 (305)
T 2v9p_A          115 ALKLWLKGIPKK--NCLAFIGPPNTGKSMLCNSLIHFL  150 (305)
T ss_dssp             HHHHHHHTCTTC--SEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             hhccceEEecCC--CEEEEECCCCCcHHHHHHHHhhhc
Confidence            578899999999  999999999999999999999753

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=98.44  E-value=7.5e-08  Score=70.75  Aligned_cols=31  Identities=35%  Similarity=0.523  Sum_probs=27.8

Q ss_pred             CccccCCCCCceEEEEEcCCCCcHHHHHHHHhC
Q 036363            9 DCELTSPSNGVRTVVLVGHTGNGKSATGNSILG   41 (240)
Q Consensus         9 ~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g   41 (240)
                      +++|.+++|  ..++++|+||||||||++.+.+
T Consensus         1 ~vsl~i~~g--ei~~l~G~nGsGKSTl~~~~~~   31 (171)
T 4gp7_A            1 SMKLTIPEL--SLVVLIGSSGSGKSTFAKKHFK   31 (171)
T ss_dssp             CEEEEEESS--EEEEEECCTTSCHHHHHHHHSC
T ss_pred             CccccCCCC--EEEEEECCCCCCHHHHHHHHcc
Confidence            578899999  9999999999999999997653

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=98.44  E-value=8.2e-08  Score=78.44  Aligned_cols=59  Identities=31%  Similarity=0.534  Sum_probs=36.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCC-ccccCCCC--C----cceeEEEEEEEEeCCcEEEEEeCCCCCCC
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRA-FKSRASSS--G----VTSTCEMHRTVLKDGQVVNVIDTPGLFDF   82 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~-~~~~~~~~--~----~t~~~~~~~~~~~~~~~~~l~DtpG~~~~   82 (240)
                      ..++|+|+||+|||||+|+|+|... +.++....  +    .|.....  ..+ . ....++||||+.++
T Consensus       216 ~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i--~~v-~-q~~~l~dtpgv~e~  281 (358)
T 2rcn_A          216 RISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARL--YHF-P-HGGDVIDSPGVREF  281 (358)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEE--EEC-T-TSCEEEECHHHHTC
T ss_pred             CEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEE--EEE-C-CCCEecCcccHHHh
Confidence            6999999999999999999999876 55554322  1    1111111  112 1 22357899998775

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=98.42  E-value=1.2e-07  Score=79.74  Aligned_cols=114  Identities=16%  Similarity=0.168  Sum_probs=63.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCC------c--cccCC--------------------CCC-cceeE-EE--EEE-
Q 036363           17 NGVRTVVLVGHTGNGKSATGNSILGRRA------F--KSRAS--------------------SSG-VTSTC-EM--HRT-   63 (240)
Q Consensus        17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~------~--~~~~~--------------------~~~-~t~~~-~~--~~~-   63 (240)
                      +.+..|+++|++|+||||+++.|++...      .  .....                    ..+ .+... ..  ... 
T Consensus        97 ~~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~  176 (432)
T 2v3c_C           97 KKQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGME  176 (432)
T ss_dssp             SSCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHH
Confidence            4447899999999999999999986321      0  00000                    000 00000 00  000 


Q ss_pred             EEeCCcEEEEEeCCCCCCCCCCC--------cCCCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcC-CeEEEEEeCC
Q 036363           64 VLKDGQVVNVIDTPGLFDFSAGS--------EFDEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCF-DYMIVVFSGR  134 (240)
Q Consensus        64 ~~~~~~~~~l~DtpG~~~~~~~~--------~~~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~-~~~i~v~~~~  134 (240)
                      .+ .+..+.++||||........        ....+|.+++|+++..+.  .   .+..+ ..|... . +...+|+||+
T Consensus       177 ~~-~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~--~---~~~~~-~~~~~~-~~~i~gvVlnK~  248 (432)
T 2v3c_C          177 KF-KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQ--Q---AGIQA-KAFKEA-VGEIGSIIVTKL  248 (432)
T ss_dssp             TT-SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGG--G---HHHHH-HHHHTT-SCSCEEEEEECS
T ss_pred             Hh-hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccH--H---HHHHH-HHHhhc-ccCCeEEEEeCC
Confidence            01 35578899999987531100        014689999999987443  2   22222 222222 2 3488999999


Q ss_pred             CCCC
Q 036363          135 DELE  138 (240)
Q Consensus       135 D~~~  138 (240)
                      |...
T Consensus       249 D~~~  252 (432)
T 2v3c_C          249 DGSA  252 (432)
T ss_dssp             SSCS
T ss_pred             CCcc
Confidence            9643

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=98.41  E-value=2e-07  Score=80.60  Aligned_cols=41  Identities=20%  Similarity=0.161  Sum_probs=36.2

Q ss_pred             ccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            6 IDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      ++.+++ .+.+|  ..++|+|+||||||||+++|+|...+.+|.
T Consensus        37 ~l~~vs-~i~~G--e~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~   77 (538)
T 1yqt_A           37 VLYRLP-VVKEG--MVVGIVGPNGTGKSTAVKILAGQLIPNLCG   77 (538)
T ss_dssp             EEECCC-CCCTT--SEEEEECCTTSSHHHHHHHHHTSSCCCTTT
T ss_pred             cccCcC-cCCCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCCc
Confidence            677888 88999  999999999999999999999987666554

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=98.40  E-value=1.1e-07  Score=72.04  Aligned_cols=36  Identities=25%  Similarity=0.270  Sum_probs=24.5

Q ss_pred             CCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCC
Q 036363            4 SRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRR   43 (240)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~   43 (240)
                      +.++.+  .++.+|  ..++|+|+||||||||+++|+|..
T Consensus         9 ~~~~~~--~~i~~G--ei~~l~GpnGsGKSTLl~~l~gl~   44 (207)
T 1znw_A            9 KPTARG--QPAAVG--RVVVLSGPSAVGKSTVVRCLRERI   44 (207)
T ss_dssp             ------------CC--CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CcCCCC--CCCCCC--CEEEEECCCCCCHHHHHHHHHhhC
Confidence            345555  688888  899999999999999999999865

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=98.37  E-value=8.7e-08  Score=73.88  Aligned_cols=37  Identities=19%  Similarity=0.346  Sum_probs=22.4

Q ss_pred             CccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHh-CCC
Q 036363            5 RIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSIL-GRR   43 (240)
Q Consensus         5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~-g~~   43 (240)
                      +..++++|.+++|  ..++|+|+||||||||++.|+ +..
T Consensus        15 ~~~~~~sl~v~~G--~ii~l~Gp~GsGKSTl~~~L~~~~~   52 (231)
T 3lnc_A           15 QTQGPGSMLKSVG--VILVLSSPSGCGKTTVANKLLEKQK   52 (231)
T ss_dssp             -------CCEECC--CEEEEECSCC----CHHHHHHC---
T ss_pred             cccCCCCcccCCC--CEEEEECCCCCCHHHHHHHHHhcCC
Confidence            4667899999999  899999999999999999999 864

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=98.36  E-value=3.2e-08  Score=93.91  Aligned_cols=45  Identities=27%  Similarity=0.253  Sum_probs=39.9

Q ss_pred             CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      +..++++++|.+++|  ..++|||++|||||||++.|+|...+.+|.
T Consensus       430 ~~~vL~~isl~i~~G--~~vaivG~sGsGKSTll~ll~~~~~~~~G~  474 (1321)
T 4f4c_A          430 DVPILRGMNLRVNAG--QTVALVGSSGCGKSTIISLLLRYYDVLKGK  474 (1321)
T ss_dssp             TSCSEEEEEEEECTT--CEEEEEECSSSCHHHHHHHHTTSSCCSEEE
T ss_pred             CCceeeceEEeecCC--cEEEEEecCCCcHHHHHHHhccccccccCc
Confidence            346899999999999  999999999999999999999987665554

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=98.36  E-value=9.6e-08  Score=90.45  Aligned_cols=43  Identities=21%  Similarity=0.190  Sum_probs=38.9

Q ss_pred             CccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            5 RIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      .++++++|.+++|  .+++|+|+||+|||||++.|+|...+.+|.
T Consensus      1047 ~~l~~vsl~i~~G--e~v~ivG~sGsGKSTl~~~l~g~~~p~~G~ 1089 (1284)
T 3g5u_A         1047 PVLQGLSLEVKKG--QTLALVGSSGCGKSTVVQLLERFYDPMAGS 1089 (1284)
T ss_dssp             CSBSSCCEEECSS--SEEEEECSSSTTHHHHHHHHTTSSCCSEEE
T ss_pred             eeecceeEEEcCC--CEEEEECCCCCCHHHHHHHHhcCcCCCCCE
Confidence            5899999999999  999999999999999999999987665543

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=98.34  E-value=3.5e-07  Score=80.05  Aligned_cols=41  Identities=17%  Similarity=0.148  Sum_probs=36.3

Q ss_pred             ccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            6 IDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      ++.+++ .+.+|  ..++|+|+||+|||||++.|+|...+.+|.
T Consensus       107 ~l~~vs-~i~~G--e~~~LiG~NGsGKSTLlkiL~Gll~p~~G~  147 (607)
T 3bk7_A          107 VLYRLP-IVKDG--MVVGIVGPNGTGKTTAVKILAGQLIPNLCE  147 (607)
T ss_dssp             EEECCC-CCCTT--SEEEEECCTTSSHHHHHHHHTTSSCCCTTT
T ss_pred             eeCCCC-CCCCC--CEEEEECCCCChHHHHHHHHhCCCCCCCCc
Confidence            677888 88899  999999999999999999999987766655

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=98.33  E-value=1.1e-07  Score=86.76  Aligned_cols=44  Identities=20%  Similarity=0.240  Sum_probs=39.2

Q ss_pred             CCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            4 SRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      +.++++++|.+..|  .+++|+|+||+|||||++.|+|...+.+|.
T Consensus       686 ~~iL~dVSl~I~~G--eivaIiGpNGSGKSTLLklLaGll~P~sG~  729 (986)
T 2iw3_A          686 KPQITDINFQCSLS--SRIAVIGPNGAGKSTLINVLTGELLPTSGE  729 (986)
T ss_dssp             SCSEEEEEEEEETT--CEEEECSCCCHHHHHHHHHHTTSSCCSEEE
T ss_pred             ceeeeccEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCceE
Confidence            46889999999999  999999999999999999999987665543

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=98.31  E-value=5.6e-07  Score=75.61  Aligned_cols=27  Identities=26%  Similarity=0.226  Sum_probs=23.5

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhCC
Q 036363           16 SNGVRTVVLVGHTGNGKSATGNSILGR   42 (240)
Q Consensus        16 ~~~~~~i~lvG~~g~GKSTlin~l~g~   42 (240)
                      ..+...|+|+|+.++|||||+|.|+|.
T Consensus        64 ~~~v~vVsV~G~~~~GKStLLN~llg~   90 (447)
T 3q5d_A           64 DKEVVAVSVAGAFRKGKSFLMDFMLRY   90 (447)
T ss_dssp             TSBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCceEEEEEECCCCCcHHHHHHHHhhh
Confidence            345678999999999999999999864

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=98.26  E-value=8.4e-07  Score=70.94  Aligned_cols=118  Identities=14%  Similarity=0.086  Sum_probs=64.8

Q ss_pred             ccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccc------cCCCC-Ccc----------eeEEEEEE---------
Q 036363           10 CELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKS------RASSS-GVT----------STCEMHRT---------   63 (240)
Q Consensus        10 ~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~------~~~~~-~~t----------~~~~~~~~---------   63 (240)
                      +++... +  ..|+++|++|+||||++..|++......      +.... +..          ........         
T Consensus        92 i~~~~~-~--~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~  168 (297)
T 1j8m_F           92 VIPDKI-P--YVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGI  168 (297)
T ss_dssp             CSCSSS-S--EEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHH
T ss_pred             cccCCC-C--eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHH
Confidence            666654 4  8999999999999999999874321110      00000 000          00000000         


Q ss_pred             ------EEe-CCcEEEEEeCCCCCC--CCCC-C-------cCCCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCe
Q 036363           64 ------VLK-DGQVVNVIDTPGLFD--FSAG-S-------EFDEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDY  126 (240)
Q Consensus        64 ------~~~-~~~~~~l~DtpG~~~--~~~~-~-------~~~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~  126 (240)
                            ... .+..+.++||||...  .... .       ....+|.+++|+++...  .......+.+.    .. .+.
T Consensus       169 ~~~~l~~~~~~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g--~~~~~~~~~~~----~~-~~i  241 (297)
T 1j8m_F          169 AKRGVEKFLSEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG--QKAYDLASKFN----QA-SKI  241 (297)
T ss_dssp             HHHHHHHHHHTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG--GGHHHHHHHHH----HT-CTT
T ss_pred             HHHHHHHHHhCCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch--HHHHHHHHHHH----hh-CCC
Confidence                  000 345789999999876  2111 0       11567889999998632  22223333222    11 234


Q ss_pred             EEEEEeCCCCC
Q 036363          127 MIVVFSGRDEL  137 (240)
Q Consensus       127 ~i~v~~~~D~~  137 (240)
                      ..+|+||+|..
T Consensus       242 ~gvVlnk~D~~  252 (297)
T 1j8m_F          242 GTIIITKMDGT  252 (297)
T ss_dssp             EEEEEECGGGC
T ss_pred             CEEEEeCCCCC
Confidence            77899999943

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=98.23  E-value=5e-07  Score=68.04  Aligned_cols=30  Identities=10%  Similarity=0.182  Sum_probs=24.3

Q ss_pred             ccCCCCCceEEEEEcCCCCcHHHHHHHHhCCC
Q 036363           12 LTSPSNGVRTVVLVGHTGNGKSATGNSILGRR   43 (240)
Q Consensus        12 ~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~   43 (240)
                      +...+|  ..++|+|+||||||||++.|+|..
T Consensus         2 ~~m~~g--~ii~l~Gp~GsGKSTl~~~L~~~~   31 (205)
T 3tr0_A            2 NAMNKA--NLFIISAPSGAGKTSLVRALVKAL   31 (205)
T ss_dssp             ---CCC--CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             CcCCCC--cEEEEECcCCCCHHHHHHHHHhhC
Confidence            445667  799999999999999999999864

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=98.23  E-value=8.1e-08  Score=91.18  Aligned_cols=44  Identities=20%  Similarity=0.165  Sum_probs=39.1

Q ss_pred             CCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            4 SRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      ..++++++|.+++|  .+|+|||++|||||||++.|++...+.+|.
T Consensus      1092 ~~VL~~isl~I~~G--e~vaIVG~SGsGKSTL~~lL~rl~~p~~G~ 1135 (1321)
T 4f4c_A         1092 IEILKGLSFSVEPG--QTLALVGPSGCGKSTVVALLERFYDTLGGE 1135 (1321)
T ss_dssp             SCSEEEEEEEECTT--CEEEEECSTTSSTTSHHHHHTTSSCCSSSE
T ss_pred             CccccceeEEECCC--CEEEEECCCCChHHHHHHHHhcCccCCCCE
Confidence            35899999999999  999999999999999999999987665543

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=98.21  E-value=5.9e-07  Score=77.68  Aligned_cols=43  Identities=14%  Similarity=0.064  Sum_probs=35.6

Q ss_pred             cCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCC
Q 036363            7 DDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASS   51 (240)
Q Consensus         7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~   51 (240)
                      ++.++|.+.+|  ..++|+|+||+|||||+++|+|...+.+|...
T Consensus       302 l~~~~~~i~~G--e~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~  344 (538)
T 1yqt_A          302 LEVEPGEIKKG--EVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIE  344 (538)
T ss_dssp             EEECCEEEETT--CEEEEECCTTSSHHHHHHHHHTSSCCSBCCCC
T ss_pred             EEeCccccCCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEE
Confidence            44556667888  89999999999999999999998877666543

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=98.20  E-value=1.2e-06  Score=75.60  Aligned_cols=43  Identities=19%  Similarity=0.176  Sum_probs=34.1

Q ss_pred             ccCCccccCC-CCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCC
Q 036363            6 IDDDCELTSP-SNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRAS   50 (240)
Q Consensus         6 ~~~~~~~~~~-~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~   50 (240)
                      .+....++.+ +|  ..++|+|+||||||||+++|+|...+..|..
T Consensus        13 ~f~l~~l~~~~~G--ei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i   56 (538)
T 3ozx_A           13 GFKLFGLPTPKNN--TILGVLGKNGVGKTTVLKILAGEIIPNFGDP   56 (538)
T ss_dssp             SCEEECCCCCCTT--EEEEEECCTTSSHHHHHHHHTTSSCCCTTCT
T ss_pred             ceeecCCCCCCCC--CEEEEECCCCCcHHHHHHHHhcCCCCCCCcc
Confidence            3455566666 46  8999999999999999999999877666543

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=98.19  E-value=2.8e-07  Score=84.13  Aligned_cols=39  Identities=23%  Similarity=0.285  Sum_probs=35.4

Q ss_pred             CCCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCC
Q 036363            2 GGSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGR   42 (240)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~   42 (240)
                      |+..++++++|.+.+|  .+++|+|+||+|||||+++|+|.
T Consensus       446 g~~~iL~~vsl~I~~G--e~v~LiGpNGsGKSTLLk~LagG  484 (986)
T 2iw3_A          446 GAKILLNKTQLRLKRA--RRYGICGPNGCGKSTLMRAIANG  484 (986)
T ss_dssp             TTEEEEEEEEEEEETT--CEEEEECSTTSSHHHHHHHHHHT
T ss_pred             CCEEeEecceEEEcCC--CEEEEECCCCCCHHHHHHHHhCC
Confidence            4556899999999999  99999999999999999999953

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=98.19  E-value=3.1e-06  Score=77.35  Aligned_cols=35  Identities=17%  Similarity=0.116  Sum_probs=32.0

Q ss_pred             CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHH
Q 036363            3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSI   39 (240)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l   39 (240)
                      +..++++++|.+..|  ..++|+||||+|||||++++
T Consensus       648 ~~~v~ndisl~~~~g--~i~~ItGpNGsGKSTlLr~i  682 (934)
T 3thx_A          648 IAFIPNDVYFEKDKQ--MFHIITGPNMGGKSTYIRQT  682 (934)
T ss_dssp             CCCCCEEEEEETTTB--CEEEEECCTTSSHHHHHHHH
T ss_pred             ceeecccceeecCCC--eEEEEECCCCCCHHHHHHHH
Confidence            456788999999988  89999999999999999998

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=98.19  E-value=5.3e-07  Score=70.77  Aligned_cols=37  Identities=22%  Similarity=0.150  Sum_probs=30.5

Q ss_pred             CccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCc
Q 036363            5 RIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAF   45 (240)
Q Consensus         5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~   45 (240)
                      .++++++  +.+|  ..++|+|+||||||||++.|+|...+
T Consensus        15 ~vl~~i~--i~~g--~~v~i~Gp~GsGKSTll~~l~g~~~~   51 (261)
T 2eyu_A           15 DKVLELC--HRKM--GLILVTGPTGSGKSTTIASMIDYINQ   51 (261)
T ss_dssp             THHHHGG--GCSS--EEEEEECSTTCSHHHHHHHHHHHHHH
T ss_pred             HHHHHHh--hCCC--CEEEEECCCCccHHHHHHHHHHhCCC
Confidence            4556666  6777  89999999999999999999986543

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=98.18  E-value=2.5e-07  Score=76.14  Aligned_cols=38  Identities=21%  Similarity=0.357  Sum_probs=33.4

Q ss_pred             CCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccc
Q 036363            8 DDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKS   47 (240)
Q Consensus         8 ~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~   47 (240)
                      +++++.+.+|  ..++|+|+||||||||+++|++...+..
T Consensus       166 ~~l~~~i~~G--~~i~ivG~sGsGKSTll~~l~~~~~~~~  203 (361)
T 2gza_A          166 SFLRRAVQLE--RVIVVAGETGSGKTTLMKALMQEIPFDQ  203 (361)
T ss_dssp             HHHHHHHHTT--CCEEEEESSSSCHHHHHHHHHTTSCTTS
T ss_pred             HHHHHHHhcC--CEEEEECCCCCCHHHHHHHHHhcCCCCc
Confidence            6788888899  8999999999999999999999865443

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=98.17  E-value=5.7e-07  Score=76.24  Aligned_cols=44  Identities=16%  Similarity=-0.048  Sum_probs=36.7

Q ss_pred             CCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCC
Q 036363            4 SRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRAS   50 (240)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~   50 (240)
                      ..++++++|.+++   ..++|+|+||||||||+++|+|...+.+|..
T Consensus        17 ~~~l~~vsl~i~~---e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I   60 (483)
T 3euj_A           17 WNGFFARTFDFDE---LVTTLSGGNGAGKSTTMAGFVTALIPDLTLL   60 (483)
T ss_dssp             ETTEEEEEEECCS---SEEEEECCTTSSHHHHHHHHHHHHCCCTTTC
T ss_pred             cccccceEEEEcc---ceEEEECCCCCcHHHHHHHHhcCCCCCCCEE
Confidence            3567889999988   5899999999999999999999766655543

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=98.16  E-value=7.9e-07  Score=76.78  Aligned_cols=41  Identities=12%  Similarity=0.152  Sum_probs=34.2

Q ss_pred             CCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCC
Q 036363            8 DDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRAS   50 (240)
Q Consensus         8 ~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~   50 (240)
                      ...++.+.+|  ..++|+|+||||||||+++|+|...+.+|..
T Consensus       285 ~~~~~~i~~G--ei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i  325 (538)
T 3ozx_A          285 VVDNGEAKEG--EIIGILGPNGIGKTTFARILVGEITADEGSV  325 (538)
T ss_dssp             EECCEEEETT--CEEEEECCTTSSHHHHHHHHTTSSCCSBCCE
T ss_pred             EeccceECCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCcEE
Confidence            3345667888  8999999999999999999999887766654

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=98.16  E-value=2.5e-06  Score=65.20  Aligned_cols=24  Identities=21%  Similarity=0.374  Sum_probs=22.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCC
Q 036363           19 VRTVVLVGHTGNGKSATGNSILGR   42 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g~   42 (240)
                      ..+|+++|.+|+|||||++.++..
T Consensus        38 ~~~i~ivG~~gvGKTtl~~~l~~~   61 (226)
T 2hf9_A           38 VVAFDFMGAIGSGKTLLIEKLIDN   61 (226)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHH
Confidence            489999999999999999999865

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=98.15  E-value=2e-06  Score=78.38  Aligned_cols=37  Identities=19%  Similarity=0.325  Sum_probs=33.7

Q ss_pred             CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhC
Q 036363            3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILG   41 (240)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g   41 (240)
                      +..++++++|.+..|  ..++|+||||+|||||++++.+
T Consensus       659 ~~~V~ndvsl~~~~g--~i~~ItGPNGaGKSTlLr~i~~  695 (918)
T 3thx_B          659 DQYVPNNTDLSEDSE--RVMIITGPNMGGKSSYIKQVAL  695 (918)
T ss_dssp             SSSCCEEEEECTTSC--CEEEEESCCCHHHHHHHHHHHH
T ss_pred             CceecccccccCCCC--eEEEEECCCCCchHHHHHHHHH
Confidence            467889999999999  8999999999999999999864

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=98.15  E-value=3e-07  Score=75.11  Aligned_cols=40  Identities=25%  Similarity=0.232  Sum_probs=35.1

Q ss_pred             CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCc
Q 036363            3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAF   45 (240)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~   45 (240)
                      +..+++++ |++.+|  .+++|+|+||+|||||++.|+|...+
T Consensus        58 g~~ald~l-l~i~~G--q~~gIiG~nGaGKTTLl~~I~g~~~~   97 (347)
T 2obl_A           58 GVRAIDGL-LTCGIG--QRIGIFAGSGVGKSTLLGMICNGASA   97 (347)
T ss_dssp             SCHHHHHH-SCEETT--CEEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred             CCEEEEee-eeecCC--CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            44577888 999999  99999999999999999999997543

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=98.14  E-value=1.9e-07  Score=75.92  Aligned_cols=40  Identities=20%  Similarity=0.183  Sum_probs=33.9

Q ss_pred             ccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccc
Q 036363            6 IDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKS   47 (240)
Q Consensus         6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~   47 (240)
                      +++++++.+.+|  ..++|+|+||||||||+++|+|...+..
T Consensus       160 ~l~~l~~~i~~g--~~v~i~G~~GsGKTTll~~l~g~~~~~~  199 (330)
T 2pt7_A          160 AISAIKDGIAIG--KNVIVCGGTGSGKTTYIKSIMEFIPKEE  199 (330)
T ss_dssp             HHHHHHHHHHHT--CCEEEEESTTSCHHHHHHHGGGGSCTTS
T ss_pred             HHhhhhhhccCC--CEEEEECCCCCCHHHHHHHHhCCCcCCC
Confidence            456678888888  8999999999999999999999865443

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=98.13  E-value=5.5e-07  Score=75.83  Aligned_cols=41  Identities=22%  Similarity=0.166  Sum_probs=35.8

Q ss_pred             CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCcc
Q 036363            3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFK   46 (240)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~   46 (240)
                      +..+++++ |++.+|  .+++|+|+||+|||||++.|+|...+.
T Consensus       144 g~~vld~v-l~i~~G--q~~~IvG~sGsGKSTLl~~Iag~~~~~  184 (438)
T 2dpy_A          144 GVRAINAL-LTVGRG--QRMGLFAGSGVGKSVLLGMMARYTRAD  184 (438)
T ss_dssp             SCHHHHHH-SCCBTT--CEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred             CceEEeee-EEecCC--CEEEEECCCCCCHHHHHHHHhcccCCC
Confidence            34578888 999999  999999999999999999999976543

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=98.10  E-value=5.7e-07  Score=68.15  Aligned_cols=33  Identities=24%  Similarity=0.305  Sum_probs=28.3

Q ss_pred             CCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCC
Q 036363           15 PSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRAS   50 (240)
Q Consensus        15 ~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~   50 (240)
                      .+|  ..++|+|+||||||||+++|+|. .+.+|..
T Consensus        20 ~~G--e~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I   52 (208)
T 3b85_A           20 DTN--TIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQV   52 (208)
T ss_dssp             HHC--SEEEEECCTTSSTTHHHHHHHHH-HHHTTSC
T ss_pred             cCC--CEEEEECCCCCCHHHHHHHHhcC-CCcCCee
Confidence            456  79999999999999999999998 6666554

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=98.10  E-value=1.4e-06  Score=76.20  Aligned_cols=44  Identities=18%  Similarity=0.265  Sum_probs=36.7

Q ss_pred             ccCCccccCCCCCc---eEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            6 IDDDCELTSPSNGV---RTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         6 ~~~~~~~~~~~~~~---~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      .+++++|.+.+|..   ..++|+|+||+|||||+++|+|...+.+|.
T Consensus       362 ~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~  408 (608)
T 3j16_B          362 TQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQ  408 (608)
T ss_dssp             ECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCC
T ss_pred             ccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCc
Confidence            46778888887732   579999999999999999999998777664

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=98.09  E-value=2.4e-06  Score=63.51  Aligned_cols=28  Identities=25%  Similarity=0.475  Sum_probs=24.7

Q ss_pred             cCCCCCceEEEEEcCCCCcHHHHHHHHhCC
Q 036363           13 TSPSNGVRTVVLVGHTGNGKSATGNSILGR   42 (240)
Q Consensus        13 ~~~~~~~~~i~lvG~~g~GKSTlin~l~g~   42 (240)
                      .+++|  ..|+|+|+||||||||++.|++.
T Consensus         5 ~i~~g--~~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A            5 DDLGG--NILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             -CCTT--EEEEEEECTTSCHHHHHHHHHTC
T ss_pred             CCCCC--eEEEEECCCCCCHHHHHHHHHhc
Confidence            45667  89999999999999999999986

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=98.08  E-value=5.5e-07  Score=76.28  Aligned_cols=38  Identities=16%  Similarity=0.221  Sum_probs=33.5

Q ss_pred             CccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 036363            9 DCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSR   48 (240)
Q Consensus         9 ~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~   48 (240)
                      +++|.+..|  .+++|+|+||||||||+++|+|...+.++
T Consensus       130 ~vsl~i~~G--e~v~IvGpnGsGKSTLlr~L~Gl~~p~~G  167 (460)
T 2npi_A          130 KIRMSNFEG--PRVVIVGGSQTGKTSLSRTLCSYALKFNA  167 (460)
T ss_dssp             HHHHHSSSC--CCEEEEESTTSSHHHHHHHHHHTTHHHHC
T ss_pred             cCceEeCCC--CEEEEECCCCCCHHHHHHHHhCcccccCC
Confidence            578888999  89999999999999999999998765554

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=98.08  E-value=1.1e-06  Score=66.13  Aligned_cols=24  Identities=38%  Similarity=0.563  Sum_probs=22.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCC
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRR   43 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~   43 (240)
                      ..++|+||||||||||++.|+|..
T Consensus         5 ~~i~lvGpsGaGKSTLl~~L~~~~   28 (198)
T 1lvg_A            5 RPVVLSGPSGAGKSTLLKKLFQEH   28 (198)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhC
Confidence            689999999999999999999853

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=98.08  E-value=2e-06  Score=64.62  Aligned_cols=36  Identities=19%  Similarity=0.277  Sum_probs=22.5

Q ss_pred             CCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhC
Q 036363            4 SRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILG   41 (240)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g   41 (240)
                      ....++++|.+.++  ..|+|+|++||||||+.+.|..
T Consensus        12 ~~~~~~~~~~~~~~--~~i~l~G~~GsGKsTl~~~La~   47 (199)
T 3vaa_A           12 DLGTENLYFQSNAM--VRIFLTGYMGAGKTTLGKAFAR   47 (199)
T ss_dssp             ------------CC--CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCCCceeEecCCC--CEEEEEcCCCCCHHHHHHHHHH
Confidence            45678999999988  8999999999999999999974

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=98.08  E-value=1.4e-06  Score=64.30  Aligned_cols=23  Identities=26%  Similarity=0.527  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCC
Q 036363           21 TVVLVGHTGNGKSATGNSILGRR   43 (240)
Q Consensus        21 ~i~lvG~~g~GKSTlin~l~g~~   43 (240)
                      +++|+|+||+|||||++.|+|..
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~l   24 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVERL   24 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            68999999999999999999865

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=98.06  E-value=3.4e-06  Score=73.78  Aligned_cols=36  Identities=25%  Similarity=0.290  Sum_probs=30.9

Q ss_pred             cCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCC
Q 036363           13 TSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRAS   50 (240)
Q Consensus        13 ~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~   50 (240)
                      .+.+|  ..++|+|+||+|||||+++|+|...+.+|..
T Consensus        99 ~~~~G--ei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i  134 (608)
T 3j16_B           99 TPRPG--QVLGLVGTNGIGKSTALKILAGKQKPNLGRF  134 (608)
T ss_dssp             CCCTT--SEEEEECCTTSSHHHHHHHHHTSSCCCTTTT
T ss_pred             CCCCC--CEEEEECCCCChHHHHHHHHhcCCCCCCceE
Confidence            45667  8999999999999999999999887766654

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=98.06  E-value=5.7e-06  Score=69.53  Aligned_cols=114  Identities=15%  Similarity=0.132  Sum_probs=62.3

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHh-------CCCCccccCCC--CCc---------ceeEEEEEE---------------
Q 036363           17 NGVRTVVLVGHTGNGKSATGNSIL-------GRRAFKSRASS--SGV---------TSTCEMHRT---------------   63 (240)
Q Consensus        17 ~~~~~i~lvG~~g~GKSTlin~l~-------g~~~~~~~~~~--~~~---------t~~~~~~~~---------------   63 (240)
                      +++..|+++|++|+||||+...|+       |....-....+  .+.         .........               
T Consensus        98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~  177 (433)
T 2xxa_A           98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALK  177 (433)
T ss_dssp             SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHH
Confidence            445899999999999999999887       44321100000  000         000000000               


Q ss_pred             EEe-CCcEEEEEeCCCCCCCCCCCc--------CCCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCC
Q 036363           64 VLK-DGQVVNVIDTPGLFDFSAGSE--------FDEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGR  134 (240)
Q Consensus        64 ~~~-~~~~~~l~DtpG~~~~~~~~~--------~~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~  134 (240)
                      ... .+..+.|+||||.........        ...++.+++|+++....+.  ......+...     .+..-+|+||+
T Consensus       178 ~~~~~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~--~~~~~~f~~~-----l~i~gvVlnK~  250 (433)
T 2xxa_A          178 EAKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDA--ANTAKAFNEA-----LPLTGVVLTKV  250 (433)
T ss_dssp             HHHHTTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTH--HHHHHHHHHH-----SCCCCEEEECT
T ss_pred             HHHhCCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHH--HHHHHHHhcc-----CCCeEEEEecC
Confidence            000 356789999999765432111        0578889999998744222  2222222221     12245789999


Q ss_pred             CCC
Q 036363          135 DEL  137 (240)
Q Consensus       135 D~~  137 (240)
                      |..
T Consensus       251 D~~  253 (433)
T 2xxa_A          251 DGD  253 (433)
T ss_dssp             TSS
T ss_pred             CCC
Confidence            953

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=98.05  E-value=1.9e-06  Score=65.85  Aligned_cols=29  Identities=17%  Similarity=0.282  Sum_probs=24.7

Q ss_pred             CCCCCceEEEEEcCCCCcHHHHHHHHhCCCC
Q 036363           14 SPSNGVRTVVLVGHTGNGKSATGNSILGRRA   44 (240)
Q Consensus        14 ~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~   44 (240)
                      .++|  ..++|+||||||||||++.|+|...
T Consensus        13 ~~~G--~ii~l~GpsGsGKSTLlk~L~g~~~   41 (219)
T 1s96_A           13 MAQG--TLYIVSAPSGAGKSSLIQALLKTQP   41 (219)
T ss_dssp             --CC--CEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             CCCC--cEEEEECCCCCCHHHHHHHHhccCC
Confidence            4566  8999999999999999999999764

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=98.05  E-value=2.4e-06  Score=71.39  Aligned_cols=31  Identities=26%  Similarity=0.236  Sum_probs=25.2

Q ss_pred             CCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCC
Q 036363            8 DDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGR   42 (240)
Q Consensus         8 ~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~   42 (240)
                      .++++.  ++  ..|+++|++|+||||++..|++.
T Consensus        91 ~~i~l~--~~--~vi~i~G~~GsGKTT~~~~LA~~  121 (425)
T 2ffh_A           91 RLPVLK--DR--NLWFLVGLQGSGKTTTAAKLALY  121 (425)
T ss_dssp             CCCCCC--SS--EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ccccCC--CC--eEEEEECCCCCCHHHHHHHHHHH
Confidence            456665  44  79999999999999999998754

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=98.02  E-value=2e-06  Score=70.92  Aligned_cols=38  Identities=18%  Similarity=0.115  Sum_probs=32.5

Q ss_pred             cCCccccCCC--CCceEEEEEcCCCCcHHHHHHHHhCCCCcc
Q 036363            7 DDDCELTSPS--NGVRTVVLVGHTGNGKSATGNSILGRRAFK   46 (240)
Q Consensus         7 ~~~~~~~~~~--~~~~~i~lvG~~g~GKSTlin~l~g~~~~~   46 (240)
                      ...+++.+.+  +  .+++|+|+||||||||++.|+|...+.
T Consensus       158 ~~~v~~~v~~~lg--~k~~IvG~nGsGKSTLlk~L~gl~~~~  197 (365)
T 1lw7_A          158 WKFIPKEARPFFA--KTVAILGGESSGKSVLVNKLAAVFNTT  197 (365)
T ss_dssp             GGGSCTTTGGGTC--EEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred             hhhCCHHHHHhhh--CeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence            4567888888  8  999999999999999999999975443

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=98.01  E-value=2.6e-06  Score=64.41  Aligned_cols=28  Identities=18%  Similarity=0.330  Sum_probs=23.3

Q ss_pred             CCCCCceEEEEEcCCCCcHHHHHHHHhCCC
Q 036363           14 SPSNGVRTVVLVGHTGNGKSATGNSILGRR   43 (240)
Q Consensus        14 ~~~~~~~~i~lvG~~g~GKSTlin~l~g~~   43 (240)
                      ..++  ..|+|+|++|||||||++.|.|..
T Consensus         3 ~~~~--~~i~i~G~~GsGKSTl~~~l~~~~   30 (211)
T 3asz_A            3 APKP--FVIGIAGGTASGKTTLAQALARTL   30 (211)
T ss_dssp             --CC--EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCCc--EEEEEECCCCCCHHHHHHHHHHHh
Confidence            3445  899999999999999999999853

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=98.01  E-value=2.1e-06  Score=76.32  Aligned_cols=31  Identities=29%  Similarity=0.486  Sum_probs=29.2

Q ss_pred             CCccCCccccCCCCCceEEEEEcCCCCcHHHHH
Q 036363            4 SRIDDDCELTSPSNGVRTVVLVGHTGNGKSATG   36 (240)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTli   36 (240)
                      ..++++++|++++|  ..++|+|+||||||||+
T Consensus        31 ~~~L~~vsl~i~~G--e~~~liGpNGaGKSTLl   61 (670)
T 3ux8_A           31 AHNLKNIDVEIPRG--KLVVLTGLSGSGKSSLA   61 (670)
T ss_dssp             STTCCSEEEEEETT--SEEEEECSTTSSHHHHH
T ss_pred             ccceeccEEEECCC--CEEEEECCCCCCHHHHh
Confidence            46799999999999  99999999999999997

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=98.00  E-value=1.5e-06  Score=77.23  Aligned_cols=34  Identities=26%  Similarity=0.377  Sum_probs=31.3

Q ss_pred             CccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHh
Q 036363            5 RIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSIL   40 (240)
Q Consensus         5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~   40 (240)
                      .++++++|++++|  ..++|+|+||||||||++.|+
T Consensus       336 ~~L~~vsl~I~~G--e~vaIiGpnGsGKSTLl~~i~  369 (670)
T 3ux8_A          336 HNLKNVSVKIPLG--TFVAVTGVSGSGKSTLVNEVL  369 (670)
T ss_dssp             TTCCSEEEEEETT--SEEEEECSTTSSHHHHHTTTH
T ss_pred             cccccceeEecCC--CEEEEEeeCCCCHHHHHHHHH
Confidence            4689999999999  999999999999999998764

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=97.98  E-value=3.3e-06  Score=63.52  Aligned_cols=30  Identities=23%  Similarity=0.396  Sum_probs=24.6

Q ss_pred             ccCCCCCceEEEEEcCCCCcHHHHHHHHhCCC
Q 036363           12 LTSPSNGVRTVVLVGHTGNGKSATGNSILGRR   43 (240)
Q Consensus        12 ~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~   43 (240)
                      |++.+|  ..|+|+|++||||||+++.|.+..
T Consensus         1 m~i~~g--~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            1 MDNEKG--LLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             ---CCC--CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CCCCCC--CEEEEECCCCCCHHHHHHHHHHhh
Confidence            345667  899999999999999999998875

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=97.96  E-value=4.8e-06  Score=67.02  Aligned_cols=30  Identities=23%  Similarity=0.218  Sum_probs=26.1

Q ss_pred             CCCCCceEEEEEcCCCCcHHHHHHHHhCCCCc
Q 036363           14 SPSNGVRTVVLVGHTGNGKSATGNSILGRRAF   45 (240)
Q Consensus        14 ~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~   45 (240)
                      +..|  ..|+|+|+||||||||++.|.|...+
T Consensus        87 ~~~g--~ivgI~G~sGsGKSTL~~~L~gll~~  116 (312)
T 3aez_A           87 RPVP--FIIGVAGSVAVGKSTTARVLQALLAR  116 (312)
T ss_dssp             SCCC--EEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred             CCCC--EEEEEECCCCchHHHHHHHHHhhccc
Confidence            5666  99999999999999999999986543

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=97.95  E-value=3.7e-06  Score=62.08  Aligned_cols=24  Identities=29%  Similarity=0.636  Sum_probs=22.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCC
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRR   43 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~   43 (240)
                      ..++|+|+||||||||++.|++..
T Consensus         6 ~~i~i~GpsGsGKSTL~~~L~~~~   29 (180)
T 1kgd_A            6 KTLVLLGAHGVGRRHIKNTLITKH   29 (180)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhC
Confidence            789999999999999999999854

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=97.95  E-value=3.6e-06  Score=63.68  Aligned_cols=28  Identities=32%  Similarity=0.533  Sum_probs=24.6

Q ss_pred             CCCCceEEEEEcCCCCcHHHHHHHHhCCCC
Q 036363           15 PSNGVRTVVLVGHTGNGKSATGNSILGRRA   44 (240)
Q Consensus        15 ~~~~~~~i~lvG~~g~GKSTlin~l~g~~~   44 (240)
                      .++  ..|+|+|+||||||||++.|+|...
T Consensus        20 ~~g--~~v~I~G~sGsGKSTl~~~l~~~~~   47 (208)
T 3c8u_A           20 PGR--QLVALSGAPGSGKSTLSNPLAAALS   47 (208)
T ss_dssp             CSC--EEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred             CCC--eEEEEECCCCCCHHHHHHHHHHHHh
Confidence            445  8999999999999999999998653

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=97.95  E-value=4.3e-06  Score=62.55  Aligned_cols=31  Identities=32%  Similarity=0.568  Sum_probs=24.8

Q ss_pred             cccCCCCCceEEEEEcCCCCcHHHHHHHHhCCC
Q 036363           11 ELTSPSNGVRTVVLVGHTGNGKSATGNSILGRR   43 (240)
Q Consensus        11 ~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~   43 (240)
                      +++...+  ..|+|+||+|+|||||++.|++..
T Consensus        13 ~~~~~~g--~~ivl~GPSGaGKsTL~~~L~~~~   43 (197)
T 3ney_A           13 NLYFQGR--KTLVLIGASGVGRSHIKNALLSQN   43 (197)
T ss_dssp             ---CCSC--CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             cCCCCCC--CEEEEECcCCCCHHHHHHHHHhhC
Confidence            5555667  899999999999999999998754

>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*

Probab=97.92  E-value=5.1e-05  Score=63.60  Aligned_cols=118  Identities=19%  Similarity=0.189  Sum_probs=67.1

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHh-------C----------CCCccccCCCCCcceeEEEEE----EEEeCC--cEEE
Q 036363           16 SNGVRTVVLVGHTGNGKSATGNSIL-------G----------RRAFKSRASSSGVTSTCEMHR----TVLKDG--QVVN   72 (240)
Q Consensus        16 ~~~~~~i~lvG~~g~GKSTlin~l~-------g----------~~~~~~~~~~~~~t~~~~~~~----~~~~~~--~~~~   72 (240)
                      ..+...|+|+|+.++|||+|+|.|+       |          ...|..+....++|.......    ...+.+  ..+.
T Consensus        64 ~~~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vl  143 (457)
T 4ido_A           64 DKEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVL  143 (457)
T ss_dssp             TSBEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEE
T ss_pred             CCceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEE
Confidence            4567899999999999999999765       2          123333333344454444322    111122  3688


Q ss_pred             EEeCCCCCCCCCCCcC---------CCceEEEEEEECCCCCCHHHHHHHHHHHH---HhC----CCcCCeEEEEEeCCC
Q 036363           73 VIDTPGLFDFSAGSEF---------DEIHAALVVFSVRSRFSQEEEATLHSLQT---LFG----KNCFDYMIVVFSGRD  135 (240)
Q Consensus        73 l~DtpG~~~~~~~~~~---------~~~~~~l~v~~~~~~~~~~~~~~l~~l~~---~~~----~~~~~~~i~v~~~~D  135 (240)
                      ++||.|+.+.......         .-.+.+||=.  ...+...+...|..+.+   ...    ....+.++.++--+-
T Consensus       144 llDTEG~~d~~~~~~~d~~ifaLa~LLSS~~IyN~--~~~i~~~~L~~L~~~tel~~~i~~~~~~~~Fp~f~wlvRDf~  220 (457)
T 4ido_A          144 LMDTQGTFDSQSTLRDSATVFALSTMISSIQVYNL--SQNVQEDDLQHLQLFTEYGRLAMEETFLKPFQSLIFLVRDWS  220 (457)
T ss_dssp             EEEECCBTCTTCCHHHHHHHHHHHHHHCSEEEEEE--ESSCCHHHHHHHHHHHHHHHHHSCCCSSCSEEEEEEEEETCC
T ss_pred             EEeccCCCCcccCccccHHHHHHHHHHhhheeecc--cccCCHHHHHHHHHHHHHHHHHhhhcccccCCceEEEEecCC
Confidence            9999999887654222         2334445443  33566776666655443   222    122345666655443

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=97.92  E-value=2.9e-06  Score=67.75  Aligned_cols=39  Identities=15%  Similarity=0.103  Sum_probs=34.3

Q ss_pred             CCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCC
Q 036363            4 SRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRA   44 (240)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~   44 (240)
                      ...++++++.+++|  ..++|+|+||+|||||++.|++...
T Consensus        22 ~~~Ld~i~~~l~~G--~~~~i~G~~G~GKTTl~~~ia~~~~   60 (296)
T 1cr0_A           22 CTGINDKTLGARGG--EVIMVTSGSGMGKSTFVRQQALQWG   60 (296)
T ss_dssp             CTTHHHHHCSBCTT--CEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCCC--eEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            45678889999999  8999999999999999999987644

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=97.91  E-value=1.3e-06  Score=74.95  Aligned_cols=39  Identities=23%  Similarity=0.175  Sum_probs=31.9

Q ss_pred             ccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCcc
Q 036363            6 IDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFK   46 (240)
Q Consensus         6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~   46 (240)
                      +++++++.+..+  ..++|+|+||||||||+++|+|...+.
T Consensus       249 ~l~~l~~~v~~g--~~i~I~GptGSGKTTlL~aL~~~i~~~  287 (511)
T 2oap_1          249 VLAYLWLAIEHK--FSAIVVGETASGKTTTLNAIMMFIPPD  287 (511)
T ss_dssp             HHHHHHHHHHTT--CCEEEEESTTSSHHHHHHHHGGGSCTT
T ss_pred             HHHHHHHHHhCC--CEEEEECCCCCCHHHHHHHHHhhCCCC
Confidence            345567777788  779999999999999999999976543

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=97.89  E-value=5.5e-06  Score=62.21  Aligned_cols=29  Identities=28%  Similarity=0.576  Sum_probs=22.4

Q ss_pred             ccCCCCCceEEEEEcCCCCcHHHHHHHHhCC
Q 036363           12 LTSPSNGVRTVVLVGHTGNGKSATGNSILGR   42 (240)
Q Consensus        12 ~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~   42 (240)
                      +...++  ..|+|+|++||||||+++.|.+.
T Consensus        24 m~~~~g--~~i~l~G~~GsGKSTl~~~L~~~   52 (200)
T 4eun_A           24 MTGEPT--RHVVVMGVSGSGKTTIAHGVADE   52 (200)
T ss_dssp             ----CC--CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             hcCCCC--cEEEEECCCCCCHHHHHHHHHHh
Confidence            344455  89999999999999999999764

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=97.89  E-value=1.1e-06  Score=68.37  Aligned_cols=37  Identities=24%  Similarity=0.357  Sum_probs=32.8

Q ss_pred             CCCccCCccccCCC---CCceEEEEEcCCCCcHHHHHHHHhC
Q 036363            3 GSRIDDDCELTSPS---NGVRTVVLVGHTGNGKSATGNSILG   41 (240)
Q Consensus         3 ~~~~~~~~~~~~~~---~~~~~i~lvG~~g~GKSTlin~l~g   41 (240)
                      +..++++++|.+.+   +  ..|+|+|++||||||+.+.|.+
T Consensus        31 ~~~~l~~~~~~i~~~l~g--~~i~l~G~~GsGKSTl~~~La~   70 (250)
T 3nwj_A           31 EQQILKKKAEEVKPYLNG--RSMYLVGMMGSGKTTVGKIMAR   70 (250)
T ss_dssp             -CHHHHHHHHTTHHHHTT--CCEEEECSTTSCHHHHHHHHHH
T ss_pred             cchhhhhhhhhhhhhcCC--CEEEEECCCCCCHHHHHHHHHH
Confidence            45678899999998   8  8999999999999999999975

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=97.87  E-value=3.4e-06  Score=72.85  Aligned_cols=40  Identities=23%  Similarity=0.186  Sum_probs=34.7

Q ss_pred             CCCCccCCccc-cCCCCCceEEEEEcCCCCcHHHHHHH--HhCCC
Q 036363            2 GGSRIDDDCEL-TSPSNGVRTVVLVGHTGNGKSATGNS--ILGRR   43 (240)
Q Consensus         2 ~~~~~~~~~~~-~~~~~~~~~i~lvG~~g~GKSTlin~--l~g~~   43 (240)
                      ++..+++++++ .+++|  ..++|+|+||||||||++.  +.|..
T Consensus        23 ~g~~~Ld~i~~G~i~~G--e~~~l~G~nGsGKSTL~~~~ll~Gl~   65 (525)
T 1tf7_A           23 TMIEGFDDISHGGLPIG--RSTLVSGTSGTGKTLFSIQFLYNGII   65 (525)
T ss_dssp             CCCTTHHHHTTSSEETT--SEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred             CCchhHHHhcCCCCCCC--eEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            35678899999 99999  9999999999999999999  45543

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=97.85  E-value=6.4e-06  Score=74.23  Aligned_cols=38  Identities=21%  Similarity=0.254  Sum_probs=33.3

Q ss_pred             CCCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCC
Q 036363            2 GGSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGR   42 (240)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~   42 (240)
                      ++..++++++|. +.|  ..++|+||||+|||||+++|+|.
T Consensus       593 ~~~~vlndisl~-~~g--~i~~ItGpNGsGKSTlLr~iagl  630 (800)
T 1wb9_A          593 NEPFIANPLNLS-PQR--RMLIITGPNMGGKSTYMRQTALI  630 (800)
T ss_dssp             SSCCCCEEEEEC-SSS--CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCceeeeccccc-CCC--cEEEEECCCCCChHHHHHHHHHH
Confidence            456788999999 777  89999999999999999999875

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=97.84  E-value=4.6e-06  Score=62.67  Aligned_cols=34  Identities=21%  Similarity=0.254  Sum_probs=27.9

Q ss_pred             CCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCC
Q 036363            8 DDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRR   43 (240)
Q Consensus         8 ~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~   43 (240)
                      +...+...++  ..|+|+|++||||||+++.|.+..
T Consensus        16 ~~~~~~~~~g--~~i~l~G~sGsGKSTl~~~La~~l   49 (200)
T 3uie_A           16 DRQRLLDQKG--CVIWVTGLSGSGKSTLACALNQML   49 (200)
T ss_dssp             HHHHHHTSCC--EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             HHHHhcCCCC--eEEEEECCCCCCHHHHHHHHHHHH
Confidence            3445556677  899999999999999999998754

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=97.82  E-value=6.7e-06  Score=61.26  Aligned_cols=28  Identities=29%  Similarity=0.267  Sum_probs=23.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSR   48 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~   48 (240)
                      .+++++|+||+|||||++.|+|... ..+
T Consensus         2 ~~i~i~G~nG~GKTTll~~l~g~~~-~~G   29 (189)
T 2i3b_A            2 RHVFLTGPPGVGKTTLIHKASEVLK-SSG   29 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHHH-HTT
T ss_pred             CEEEEECCCCChHHHHHHHHHhhcc-cCC
Confidence            5799999999999999999998754 444

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=97.82  E-value=3.1e-06  Score=68.06  Aligned_cols=27  Identities=19%  Similarity=0.198  Sum_probs=23.8

Q ss_pred             CCCCceEEEEEcCCCCcHHHHHHHHhCCC
Q 036363           15 PSNGVRTVVLVGHTGNGKSATGNSILGRR   43 (240)
Q Consensus        15 ~~~~~~~i~lvG~~g~GKSTlin~l~g~~   43 (240)
                      ..+  ..|+|+|++|||||||++.|.|..
T Consensus        78 ~~g--~iigI~G~~GsGKSTl~~~L~~~l  104 (308)
T 1sq5_A           78 RIP--YIISIAGSVAVGKSTTARVLQALL  104 (308)
T ss_dssp             CCC--EEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCC--EEEEEECCCCCCHHHHHHHHHHHH
Confidence            445  899999999999999999999853

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=97.79  E-value=7.5e-06  Score=62.58  Aligned_cols=29  Identities=14%  Similarity=0.203  Sum_probs=25.4

Q ss_pred             cCCCCCceEEEEEcCCCCcHHHHHHHHhCCC
Q 036363           13 TSPSNGVRTVVLVGHTGNGKSATGNSILGRR   43 (240)
Q Consensus        13 ~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~   43 (240)
                      -+++|  ..++|+|+||||||||++.|+|..
T Consensus        21 gi~~G--~~~~l~G~nGsGKSTll~~l~g~~   49 (231)
T 4a74_A           21 GIETQ--AITEVFGEFGSGKTQLAHTLAVMV   49 (231)
T ss_dssp             SEESS--EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCCCC--cEEEEECCCCCCHHHHHHHHHHHH
Confidence            45677  899999999999999999999843

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=97.79  E-value=1.2e-05  Score=62.28  Aligned_cols=28  Identities=29%  Similarity=0.481  Sum_probs=24.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh---CCCCccc
Q 036363           20 RTVVLVGHTGNGKSATGNSIL---GRRAFKS   47 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~---g~~~~~~   47 (240)
                      ..|+|+|+||||||||++.|+   |...+..
T Consensus        28 ~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~   58 (246)
T 2bbw_A           28 LRAVILGPPGSGKGTVCQRIAQNFGLQHLSS   58 (246)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHCCCCEEH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCeEecH
Confidence            799999999999999999999   8765543

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=97.78  E-value=1.3e-05  Score=60.50  Aligned_cols=28  Identities=21%  Similarity=0.379  Sum_probs=24.2

Q ss_pred             CCCCceEEEEEcCCCCcHHHHHHHHhCCCC
Q 036363           15 PSNGVRTVVLVGHTGNGKSATGNSILGRRA   44 (240)
Q Consensus        15 ~~~~~~~i~lvG~~g~GKSTlin~l~g~~~   44 (240)
                      ++|  ..|+|+||+|||||||++.|++...
T Consensus         6 ~~g--~~i~l~GpsGsGKsTl~~~L~~~~~   33 (208)
T 3tau_A            6 ERG--LLIVLSGPSGVGKGTVREAVFKDPE   33 (208)
T ss_dssp             CCC--CEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred             CCC--cEEEEECcCCCCHHHHHHHHHhhCC
Confidence            345  7899999999999999999998653

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=97.78  E-value=1.1e-05  Score=59.38  Aligned_cols=33  Identities=27%  Similarity=0.381  Sum_probs=27.5

Q ss_pred             CCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCC
Q 036363            8 DDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRR   43 (240)
Q Consensus         8 ~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~   43 (240)
                      +++++.+.++   ..+|+|+||+|||||+.+|.+..
T Consensus        18 ~~~~~~~~~g---~~~i~G~NGsGKStll~ai~~~l   50 (182)
T 3kta_A           18 KKVVIPFSKG---FTAIVGANGSGKSNIGDAILFVL   50 (182)
T ss_dssp             SCEEEECCSS---EEEEEECTTSSHHHHHHHHHHHT
T ss_pred             ccEEEecCCC---cEEEECCCCCCHHHHHHHHHHHH
Confidence            5677777776   78999999999999999997643

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=97.76  E-value=3.1e-06  Score=66.91  Aligned_cols=35  Identities=23%  Similarity=0.375  Sum_probs=29.1

Q ss_pred             CccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCC
Q 036363            5 RIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRR   43 (240)
Q Consensus         5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~   43 (240)
                      .+++++++.++.|    ++|+||+|+|||||+++|+|..
T Consensus        34 ~~l~~~~l~~~~G----vlL~Gp~GtGKTtLakala~~~   68 (274)
T 2x8a_A           34 DQFKALGLVTPAG----VLLAGPPGCGKTLLAKAVANES   68 (274)
T ss_dssp             HHHHHTTCCCCSE----EEEESSTTSCHHHHHHHHHHHT
T ss_pred             HHHHHcCCCCCCe----EEEECCCCCcHHHHHHHHHHHc
Confidence            3456677777765    9999999999999999999754

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=97.76  E-value=7.9e-06  Score=60.19  Aligned_cols=30  Identities=20%  Similarity=0.295  Sum_probs=25.0

Q ss_pred             cCCCCCceEEEEEcCCCCcHHHHHHHHhCCCC
Q 036363           13 TSPSNGVRTVVLVGHTGNGKSATGNSILGRRA   44 (240)
Q Consensus        13 ~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~   44 (240)
                      .++.+  ..++|+|++|+|||||+++|++...
T Consensus        34 ~~~~g--~~~~l~G~~G~GKTtL~~~i~~~~~   63 (180)
T 3ec2_A           34 NPEEG--KGLTFVGSPGVGKTHLAVATLKAIY   63 (180)
T ss_dssp             CGGGC--CEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred             cccCC--CEEEEECCCCCCHHHHHHHHHHHHH
Confidence            44455  7899999999999999999987653

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=97.76  E-value=1.3e-05  Score=62.51  Aligned_cols=28  Identities=21%  Similarity=0.387  Sum_probs=24.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh---CCCCccc
Q 036363           20 RTVVLVGHTGNGKSATGNSIL---GRRAFKS   47 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~---g~~~~~~   47 (240)
                      ..|+|+|++||||||+++.|.   |...+.+
T Consensus        28 ~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~   58 (252)
T 4e22_A           28 PVITVDGPSGAGKGTLCKALAESLNWRLLDS   58 (252)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHTTCEEEEH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhcCCCcCCC
Confidence            799999999999999999999   7655443

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=97.72  E-value=1.3e-05  Score=71.80  Aligned_cols=36  Identities=19%  Similarity=0.173  Sum_probs=31.3

Q ss_pred             CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCC
Q 036363            3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRR   43 (240)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~   43 (240)
                      +..++++++|.   |  ..++|+||||+|||||+++|+|..
T Consensus       565 ~~~vl~disl~---g--~i~~I~GpNGsGKSTlLr~iagl~  600 (765)
T 1ewq_A          565 TEFVPNDLEMA---H--ELVLITGPNMAGKSTFLRQTALIA  600 (765)
T ss_dssp             SCCCCEEEEES---S--CEEEEESCSSSSHHHHHHHHHHHH
T ss_pred             CceEeeeccCC---C--cEEEEECCCCCChHHHHHHHHhhh
Confidence            45677888888   6  899999999999999999998854

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=97.71  E-value=7.9e-06  Score=67.34  Aligned_cols=35  Identities=17%  Similarity=0.217  Sum_probs=30.9

Q ss_pred             ccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCC
Q 036363            6 IDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGR   42 (240)
Q Consensus         6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~   42 (240)
                      +++++++.++++  ..++|+|++|+|||||++.|++.
T Consensus       158 ~l~~~~~~i~~~--~~i~l~G~~GsGKSTl~~~l~~~  192 (377)
T 1svm_A          158 FLKCMVYNIPKK--RYWLFKGPIDSGKTTLAAALLEL  192 (377)
T ss_dssp             HHHHHHHCCTTC--CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             HHHhcccccCCC--CEEEEECCCCCCHHHHHHHHHhh
Confidence            456678899999  89999999999999999999863

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=97.71  E-value=4.4e-06  Score=69.93  Aligned_cols=35  Identities=23%  Similarity=0.165  Sum_probs=29.9

Q ss_pred             CccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCC
Q 036363            5 RIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGR   42 (240)
Q Consensus         5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~   42 (240)
                      .++++++|.+.+|   .++|+|+||+|||||+++|.+.
T Consensus        49 ~~l~~v~l~~~~G---~~~lvG~NGaGKStLl~aI~~l   83 (415)
T 4aby_A           49 ATITQLELELGGG---FCAFTGETGAGKSIIVDALGLL   83 (415)
T ss_dssp             TTEEEEEEECCSS---EEEEEESHHHHHHHHTHHHHHH
T ss_pred             cceeeEEEecCCC---cEEEECCCCCCHHHHHHHHHHH
Confidence            3567888998887   8899999999999999998554

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=97.69  E-value=1.7e-05  Score=65.45  Aligned_cols=29  Identities=28%  Similarity=0.347  Sum_probs=25.4

Q ss_pred             CCCCCceEEEEEcCCCCcHHHHHHHHhCCCC
Q 036363           14 SPSNGVRTVVLVGHTGNGKSATGNSILGRRA   44 (240)
Q Consensus        14 ~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~   44 (240)
                      +.++  ..++|+|+||||||||++.|++...
T Consensus       133 ~~~g--~~i~ivG~~GsGKTTll~~l~~~~~  161 (372)
T 2ewv_A          133 HRKM--GLILVTGPTGSGKSTTIASMIDYIN  161 (372)
T ss_dssp             TSSS--EEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred             hcCC--CEEEEECCCCCCHHHHHHHHHhhcC
Confidence            5666  8999999999999999999998643

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=97.68  E-value=2.3e-05  Score=60.16  Aligned_cols=31  Identities=23%  Similarity=0.191  Sum_probs=26.5

Q ss_pred             ccccCCCCCceEEEEEcCCCCcHHHHHHHHhCC
Q 036363           10 CELTSPSNGVRTVVLVGHTGNGKSATGNSILGR   42 (240)
Q Consensus        10 ~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~   42 (240)
                      -.....+|  ..|+|+|++||||||+++.|.+.
T Consensus        13 ~~~~~~~g--~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           13 KYAEGTQP--FTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             CBTTTCCC--EEEEEECSTTSCHHHHHHTTGGG
T ss_pred             ccCCCCCc--eEEEEECCCCCCHHHHHHHHHhc
Confidence            34455667  89999999999999999999875

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=97.68  E-value=0.0001  Score=60.40  Aligned_cols=79  Identities=11%  Similarity=-0.010  Sum_probs=47.4

Q ss_pred             eEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEEEEEEECCC----------CCCHHH-HHHHHHHHHHhCCCc
Q 036363           57 TCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAALVVFSVRS----------RFSQEE-EATLHSLQTLFGKNC  123 (240)
Q Consensus        57 ~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~v~~~~~----------~~~~~~-~~~l~~l~~~~~~~~  123 (240)
                      ........+ ++..+.+|||+|...+...+..  .+++++|+|+++++          .-+..+ ..++..+...- ...
T Consensus       190 Gi~~~~~~~-~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~-~~~  267 (362)
T 1zcb_A          190 GIHEYDFEI-KNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNR-VFS  267 (362)
T ss_dssp             SEEEEEEEE-TTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCG-GGT
T ss_pred             ceEEEEeee-CCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcch-hhC
Confidence            334444555 6788999999999888777766  89999999999985          222222 23344333210 012


Q ss_pred             CCeEEEEEeCCCCC
Q 036363          124 FDYMIVVFSGRDEL  137 (240)
Q Consensus       124 ~~~~i~v~~~~D~~  137 (240)
                      ..|+++++||.|..
T Consensus       268 ~~piILv~NK~DL~  281 (362)
T 1zcb_A          268 NVSIILFLNKTDLL  281 (362)
T ss_dssp             TSEEEEEEECHHHH
T ss_pred             CCCEEEEEEChhhh
Confidence            36899999999954

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=97.66  E-value=2.8e-05  Score=56.82  Aligned_cols=22  Identities=36%  Similarity=0.576  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 036363           20 RTVVLVGHTGNGKSATGNSILG   41 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g   41 (240)
                      ..|+|+|++||||||+++.|.+
T Consensus         9 ~~i~l~G~~GsGKSTl~~~l~~   30 (175)
T 1knq_A            9 HIYVLMGVSGSGKSAVASEVAH   30 (175)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHH
T ss_pred             cEEEEEcCCCCCHHHHHHHHHH
Confidence            8999999999999999999875

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=97.66  E-value=2.1e-05  Score=58.38  Aligned_cols=22  Identities=27%  Similarity=0.493  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 036363           20 RTVVLVGHTGNGKSATGNSILG   41 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g   41 (240)
                      ..++|+|+||||||||++.|++
T Consensus         3 ~ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            3 KLYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHhc
Confidence            5789999999999999999985

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=97.65  E-value=1.4e-05  Score=65.50  Aligned_cols=31  Identities=29%  Similarity=0.343  Sum_probs=25.5

Q ss_pred             cCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCc
Q 036363           13 TSPSNGVRTVVLVGHTGNGKSATGNSILGRRAF   45 (240)
Q Consensus        13 ~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~   45 (240)
                      ...++  ..|+|+|+||||||||+++|+|...+
T Consensus       119 ~~~~~--g~i~I~GptGSGKTTlL~~l~g~~~~  149 (356)
T 3jvv_A          119 SDVPR--GLVLVTGPTGSGKSTTLAAMLDYLNN  149 (356)
T ss_dssp             HHCSS--EEEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred             HhCCC--CEEEEECCCCCCHHHHHHHHHhcccC
Confidence            34455  69999999999999999999986543

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=97.64  E-value=2.4e-05  Score=72.33  Aligned_cols=39  Identities=23%  Similarity=0.248  Sum_probs=33.5

Q ss_pred             CCCCccCCccccCCC-------CCceEEEEEcCCCCcHHHHHHHHhCCC
Q 036363            2 GGSRIDDDCELTSPS-------NGVRTVVLVGHTGNGKSATGNSILGRR   43 (240)
Q Consensus         2 ~~~~~~~~~~~~~~~-------~~~~~i~lvG~~g~GKSTlin~l~g~~   43 (240)
                      ++..++++++|.+..       |  ..++|+||||+|||||++++ |..
T Consensus       767 ~~~~v~ndi~l~~~~~~~~~~~g--~i~~ItGpNgsGKSTlLr~i-Gl~  812 (1022)
T 2o8b_B          767 GDDFIPNDILIGCEEEEQENGKA--YCVLVTGPNMGGKSTLMRQA-GLL  812 (1022)
T ss_dssp             CCCCCCEEEEESCCCSCC---CC--CEEEEECCTTSSHHHHHHHH-HHH
T ss_pred             CCceEeeeeeeccccccccCCCC--cEEEEECCCCCChHHHHHHH-HHH
Confidence            345688999999876       6  89999999999999999998 654

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=97.63  E-value=3.6e-05  Score=56.87  Aligned_cols=32  Identities=19%  Similarity=0.452  Sum_probs=24.9

Q ss_pred             CccccCCCCCceEEEEEcCCCCcHHHHHHHHhCC
Q 036363            9 DCELTSPSNGVRTVVLVGHTGNGKSATGNSILGR   42 (240)
Q Consensus         9 ~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~   42 (240)
                      +++|+.+.+  ..|+|+|++||||||+.+.|...
T Consensus         2 ~~~~~~~~~--~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A            2 PGSMEQPKG--INILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             ----CCCSS--CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CcCcCCCCC--CEEEEECCCCCCHHHHHHHHHHh
Confidence            467777777  89999999999999999998753

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=97.62  E-value=0.00011  Score=60.84  Aligned_cols=78  Identities=15%  Similarity=0.026  Sum_probs=53.0

Q ss_pred             EEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEEEEEEECCC----------CCCHHH-HHHHHHHHHHhCCCcC
Q 036363           58 CEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAALVVFSVRS----------RFSQEE-EATLHSLQTLFGKNCF  124 (240)
Q Consensus        58 ~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~v~~~~~----------~~~~~~-~~~l~~l~~~~~~~~~  124 (240)
                      .....+.+ ++..+.+|||+|...+...+..  .+++++|+|+++++          .-+..+ ..++..+...- ....
T Consensus       207 i~~~~~~~-~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~-~~~~  284 (402)
T 1azs_C          207 IFETKFQV-DKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNR-WLRT  284 (402)
T ss_dssp             EEEEEEEE-TTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCT-TCSS
T ss_pred             eEEEEeec-CCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcc-cCCC
Confidence            33344555 6788999999999988777666  99999999999985          333332 23333333210 1123


Q ss_pred             CeEEEEEeCCCCC
Q 036363          125 DYMIVVFSGRDEL  137 (240)
Q Consensus       125 ~~~i~v~~~~D~~  137 (240)
                      .|++||+||+|..
T Consensus       285 ~piiLvgNK~DL~  297 (402)
T 1azs_C          285 ISVILFLNKQDLL  297 (402)
T ss_dssp             CCEEEEEECHHHH
T ss_pred             CeEEEEEEChhhh
Confidence            6799999999954

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=97.59  E-value=2.5e-05  Score=65.34  Aligned_cols=26  Identities=31%  Similarity=0.317  Sum_probs=23.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCc
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAF   45 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~   45 (240)
                      ..|+|+|+||||||||+++|+|...+
T Consensus       168 gii~I~GpnGSGKTTlL~allg~l~~  193 (418)
T 1p9r_A          168 GIILVTGPTGSGKSTTLYAGLQELNS  193 (418)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHHHCC
T ss_pred             CeEEEECCCCCCHHHHHHHHHhhcCC
Confidence            78999999999999999999986543

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=97.58  E-value=1.7e-05  Score=60.65  Aligned_cols=35  Identities=20%  Similarity=0.239  Sum_probs=28.5

Q ss_pred             ccCCccc-cCCCCCceEEEEEcCCCCcHHHHHHHHhCC
Q 036363            6 IDDDCEL-TSPSNGVRTVVLVGHTGNGKSATGNSILGR   42 (240)
Q Consensus         6 ~~~~~~~-~~~~~~~~~i~lvG~~g~GKSTlin~l~g~   42 (240)
                      .++++.. .+++|  ..++|+|+||+|||||++.|++.
T Consensus        11 ~Ld~~~~ggi~~G--~~~~i~G~~GsGKTtl~~~l~~~   46 (235)
T 2w0m_A           11 DFDKLIQGGIPQG--FFIALTGEPGTGKTIFSLHFIAK   46 (235)
T ss_dssp             HHHGGGTTSEETT--CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             HHHHHhcCCCcCC--CEEEEEcCCCCCHHHHHHHHHHH
Confidence            3455554 67778  89999999999999999999854

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=97.57  E-value=1.9e-05  Score=61.48  Aligned_cols=34  Identities=26%  Similarity=0.407  Sum_probs=27.3

Q ss_pred             ccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCC
Q 036363            6 IDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRR   43 (240)
Q Consensus         6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~   43 (240)
                      ++.++++.++.|    ++|+|++|+|||||+++|++..
T Consensus        40 ~~~~~~~~~~~g----~ll~G~~G~GKTtl~~~i~~~~   73 (254)
T 1ixz_A           40 RFHEMGARIPKG----VLLVGPPGVGKTHLARAVAGEA   73 (254)
T ss_dssp             HHHHTTCCCCSE----EEEECCTTSSHHHHHHHHHHHT
T ss_pred             HHHHcCCCCCCe----EEEECCCCCCHHHHHHHHHHHh
Confidence            345566666654    9999999999999999998754

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=97.54  E-value=2.9e-05  Score=56.57  Aligned_cols=24  Identities=38%  Similarity=0.639  Sum_probs=21.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCC
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRR   43 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~   43 (240)
                      ..|+|+|++||||||+.+.|.+..
T Consensus         5 ~~i~l~G~~GsGKSTl~~~La~~l   28 (173)
T 1kag_A            5 RNIFLVGPMGAGKSTIGRQLAQQL   28 (173)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHh
Confidence            579999999999999999998753

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=97.52  E-value=8.3e-05  Score=55.92  Aligned_cols=32  Identities=13%  Similarity=0.138  Sum_probs=26.2

Q ss_pred             ccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCC
Q 036363           10 CELTSPSNGVRTVVLVGHTGNGKSATGNSILGRR   43 (240)
Q Consensus        10 ~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~   43 (240)
                      .-..++++  ..|+|+|++||||||+.+.|.+..
T Consensus        14 ~~~~~~~~--~~i~i~G~~GsGKSTl~~~L~~~~   45 (207)
T 2qt1_A           14 LVPRGSKT--FIIGISGVTNSGKTTLAKNLQKHL   45 (207)
T ss_dssp             CCCCSCCC--EEEEEEESTTSSHHHHHHHHHTTS
T ss_pred             ccccCCCC--eEEEEECCCCCCHHHHHHHHHHhc
Confidence            33445555  899999999999999999999863

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=97.52  E-value=2e-05  Score=57.60  Aligned_cols=25  Identities=16%  Similarity=0.240  Sum_probs=22.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCC
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRA   44 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~   44 (240)
                      ..++|+|++|||||||++.|++...
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~~~   27 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPILR   27 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhh
Confidence            5899999999999999999998643

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=97.52  E-value=2.1e-05  Score=64.68  Aligned_cols=31  Identities=26%  Similarity=0.296  Sum_probs=25.4

Q ss_pred             cCCccccCCCCCceEEEEEcCCCCcHHHHHHHHh
Q 036363            7 DDDCELTSPSNGVRTVVLVGHTGNGKSATGNSIL   40 (240)
Q Consensus         7 ~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~   40 (240)
                      ..++++.++.|  . .+|+|+|||||||++++|+
T Consensus        14 ~~~~~i~~~~g--~-~~i~G~NGaGKTTll~ai~   44 (365)
T 3qf7_A           14 LKNVDIEFQSG--I-TVVEGPNGAGKSSLFEAIS   44 (365)
T ss_dssp             EEEEEEECCSE--E-EEEECCTTSSHHHHHHHHH
T ss_pred             ccceEEecCCC--e-EEEECCCCCCHHHHHHHHH
Confidence            44567777766  4 6699999999999999987

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=97.51  E-value=2.6e-05  Score=61.59  Aligned_cols=34  Identities=26%  Similarity=0.407  Sum_probs=27.4

Q ss_pred             ccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCC
Q 036363            6 IDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRR   43 (240)
Q Consensus         6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~   43 (240)
                      ++.++++.++.|    ++|+|++|+|||||+++|++..
T Consensus        64 ~l~~~~~~~~~g----vll~Gp~GtGKTtl~~~i~~~~   97 (278)
T 1iy2_A           64 RFHEMGARIPKG----VLLVGPPGVGKTHLARAVAGEA   97 (278)
T ss_dssp             HHHHTTCCCCCE----EEEECCTTSSHHHHHHHHHHHT
T ss_pred             HHHHcCCCCCCe----EEEECCCcChHHHHHHHHHHHc
Confidence            345566666654    8999999999999999998754

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=97.49  E-value=5.9e-05  Score=60.74  Aligned_cols=27  Identities=19%  Similarity=0.154  Sum_probs=23.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCC
Q 036363           17 NGVRTVVLVGHTGNGKSATGNSILGRR   43 (240)
Q Consensus        17 ~~~~~i~lvG~~g~GKSTlin~l~g~~   43 (240)
                      +.+..|+|+|++|||||||++.|.+..
T Consensus        90 ~~p~iigI~GpsGSGKSTl~~~L~~ll  116 (321)
T 3tqc_A           90 KVPYIIGIAGSVAVGKSTTSRVLKALL  116 (321)
T ss_dssp             CCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            345799999999999999999997653

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=97.46  E-value=7.5e-05  Score=56.10  Aligned_cols=22  Identities=32%  Similarity=0.412  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 036363           20 RTVVLVGHTGNGKSATGNSILG   41 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g   41 (240)
                      ..|+|+|++||||||+.+.|.+
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999987

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=97.45  E-value=7.8e-05  Score=55.92  Aligned_cols=23  Identities=17%  Similarity=0.247  Sum_probs=21.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 036363           20 RTVVLVGHTGNGKSATGNSILGR   42 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~   42 (240)
                      ..|+|+|++|||||||++.|.+.
T Consensus        23 ~~i~i~G~~GsGKstl~~~l~~~   45 (201)
T 1rz3_A           23 LVLGIDGLSRSGKTTLANQLSQT   45 (201)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            89999999999999999999864

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=97.44  E-value=6.1e-05  Score=61.69  Aligned_cols=34  Identities=21%  Similarity=0.188  Sum_probs=28.8

Q ss_pred             CccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhC
Q 036363            5 RIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILG   41 (240)
Q Consensus         5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g   41 (240)
                      ..++++++.+.+|   ..+|+|+||+||||++++|.+
T Consensus        15 ~~~~~~~~~~~~g---~~~i~G~nG~GKttll~ai~~   48 (359)
T 2o5v_A           15 RNLAPGTLNFPEG---VTGIYGENGAGKTNLLEAAYL   48 (359)
T ss_dssp             TTCCSEEEECCSE---EEEEECCTTSSHHHHHHHHHH
T ss_pred             cceeeeEEEEcCC---eEEEECCCCCChhHHHHHHHH
Confidence            3456788888776   889999999999999999975

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=97.44  E-value=6.3e-05  Score=60.65  Aligned_cols=25  Identities=28%  Similarity=0.486  Sum_probs=22.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCC
Q 036363           19 VRTVVLVGHTGNGKSATGNSILGRR   43 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g~~   43 (240)
                      ...++|+|++|||||||+|.|+|..
T Consensus         4 i~v~~i~G~~GaGKTTll~~l~~~~   28 (318)
T 1nij_A            4 IAVTLLTGFLGAGKTTLLRHILNEQ   28 (318)
T ss_dssp             EEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred             ccEEEEEecCCCCHHHHHHHHHhhc
Confidence            4689999999999999999999864

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=97.41  E-value=4.7e-05  Score=54.36  Aligned_cols=24  Identities=21%  Similarity=0.313  Sum_probs=22.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCC
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRR   43 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~   43 (240)
                      ..++|+|++|+|||||+++|++..
T Consensus        37 ~~~~l~G~~G~GKTtL~~~i~~~~   60 (149)
T 2kjq_A           37 QFIYVWGEEGAGKSHLLQAWVAQA   60 (149)
T ss_dssp             SEEEEESSSTTTTCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHH
Confidence            789999999999999999999854

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=97.41  E-value=9.3e-05  Score=52.79  Aligned_cols=28  Identities=25%  Similarity=0.412  Sum_probs=21.9

Q ss_pred             ccccCCCCCceEEEEEcCCCCcHHHHHHHHh
Q 036363           10 CELTSPSNGVRTVVLVGHTGNGKSATGNSIL   40 (240)
Q Consensus        10 ~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~   40 (240)
                      ..+...+   ...+|+|+||+||||++.+|.
T Consensus        17 ~~i~f~~---g~~~I~G~NGsGKStil~Ai~   44 (149)
T 1f2t_A           17 TVVEFKE---GINLIIGQNGSGKSSLLDAIL   44 (149)
T ss_dssp             EEEECCS---EEEEEECCTTSSHHHHHHHHH
T ss_pred             eEEEcCC---CeEEEECCCCCCHHHHHHHHH
Confidence            3444444   367899999999999999975

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=97.40  E-value=0.00011  Score=59.33  Aligned_cols=33  Identities=18%  Similarity=0.268  Sum_probs=28.4

Q ss_pred             CCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCC
Q 036363            8 DDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGR   42 (240)
Q Consensus         8 ~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~   42 (240)
                      .+++|...++  ..|+++|++|+||||++..|++.
T Consensus        96 ~~l~~~~~~~--~vI~ivG~~G~GKTT~~~~LA~~  128 (320)
T 1zu4_A           96 YRIDFKENRL--NIFMLVGVNGTGKTTSLAKMANY  128 (320)
T ss_dssp             CCCCCCTTSC--EEEEEESSTTSSHHHHHHHHHHH
T ss_pred             cCccccCCCC--eEEEEECCCCCCHHHHHHHHHHH
Confidence            5677877776  89999999999999999998754

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=97.38  E-value=7.4e-05  Score=56.00  Aligned_cols=22  Identities=27%  Similarity=0.436  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 036363           20 RTVVLVGHTGNGKSATGNSILG   41 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g   41 (240)
                      .+|+|+|++||||||+.+.|.+
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH
Confidence            4799999999999999999986

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=97.38  E-value=9.6e-05  Score=55.50  Aligned_cols=24  Identities=25%  Similarity=0.393  Sum_probs=21.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCC
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRR   43 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~   43 (240)
                      ..|+|+|++||||||+++.|....
T Consensus        13 ~~i~l~G~sGsGKsTl~~~L~~~~   36 (204)
T 2qor_A           13 PPLVVCGPSGVGKGTLIKKVLSEF   36 (204)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhC
Confidence            789999999999999999997643

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=97.38  E-value=2.9e-05  Score=70.70  Aligned_cols=34  Identities=26%  Similarity=0.377  Sum_probs=31.2

Q ss_pred             CccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHh
Q 036363            5 RIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSIL   40 (240)
Q Consensus         5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~   40 (240)
                      ..+++++|.++.|  ..++|+|+||+|||||++.|+
T Consensus       638 ~~Lk~Vsl~I~~G--eiv~I~G~nGSGKSTLl~~ll  671 (972)
T 2r6f_A          638 HNLKNVSVKIPLG--TFVAVTGVSGSGKSTLVNEVL  671 (972)
T ss_dssp             SSCCSEEEEEESS--SEEECCBCTTSSHHHHHTTTH
T ss_pred             cccccceEEEcCC--CEEEEEcCCCCCHHHHHHHHH
Confidence            3689999999999  999999999999999999864

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=97.37  E-value=7.9e-05  Score=56.78  Aligned_cols=23  Identities=17%  Similarity=0.359  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 036363           20 RTVVLVGHTGNGKSATGNSILGR   42 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~   42 (240)
                      ..|+|+|++||||||+.+.|.+.
T Consensus         6 ~~i~i~G~~GsGKSTl~~~L~~~   28 (227)
T 1cke_A            6 PVITIDGPSGAGKGTLCKAMAEA   28 (227)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            58999999999999999999764

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=97.37  E-value=0.00015  Score=58.04  Aligned_cols=32  Identities=16%  Similarity=0.284  Sum_probs=25.4

Q ss_pred             ccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCC
Q 036363           10 CELTSPSNGVRTVVLVGHTGNGKSATGNSILGRR   43 (240)
Q Consensus        10 ~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~   43 (240)
                      +++....+  ..|+++|++|+||||++..|++..
T Consensus        97 ~~~~~~~~--~vi~ivG~~GsGKTTl~~~LA~~l  128 (306)
T 1vma_A           97 LNVPPEPP--FVIMVVGVNGTGKTTSCGKLAKMF  128 (306)
T ss_dssp             CCCCSSSC--EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CcccCCCC--eEEEEEcCCCChHHHHHHHHHHHH
Confidence            34444445  899999999999999999988653

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=97.36  E-value=8.9e-06  Score=62.31  Aligned_cols=29  Identities=24%  Similarity=0.205  Sum_probs=24.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSR   48 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~   48 (240)
                      ..++|+||||||||||+++|+|...+.++
T Consensus        28 ~~~~i~GpnGsGKSTll~~i~g~~~~~~G   56 (227)
T 1qhl_A           28 LVTTLSGGNGAGKSTTMAAFVTALIPDLT   56 (227)
T ss_dssp             HHHHHHSCCSHHHHHHHHHHHHHHSCCTT
T ss_pred             cEEEEECCCCCCHHHHHHHHhcccccCCC
Confidence            35789999999999999999997665554

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=97.31  E-value=0.00012  Score=54.22  Aligned_cols=22  Identities=27%  Similarity=0.546  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCC
Q 036363           21 TVVLVGHTGNGKSATGNSILGR   42 (240)
Q Consensus        21 ~i~lvG~~g~GKSTlin~l~g~   42 (240)
                      -|+|+||+|||||||++.|+..
T Consensus         3 pIVi~GPSG~GK~Tl~~~L~~~   24 (186)
T 1ex7_A            3 PIVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            4899999999999999999754

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=97.29  E-value=2.1e-05  Score=71.07  Aligned_cols=33  Identities=21%  Similarity=0.320  Sum_probs=30.4

Q ss_pred             ccCCccccCCCCCceEEEEEcCCCCcHHHHHHH-Hh
Q 036363            6 IDDDCELTSPSNGVRTVVLVGHTGNGKSATGNS-IL   40 (240)
Q Consensus         6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~-l~   40 (240)
                      .+++++|.++.|  ..++|+|+||+|||||++. |+
T Consensus       512 ~L~~vsl~i~~G--eiv~I~G~nGSGKSTLl~~~L~  545 (842)
T 2vf7_A          512 NLDNLDVRFPLG--VMTSVTGVSGSGKSTLVSQALV  545 (842)
T ss_dssp             TEEEEEEEEESS--SEEEEECCTTSSHHHHCCCCCH
T ss_pred             ccccceEEEcCC--CEEEEEcCCCcCHHHHHHHHHH
Confidence            578999999999  9999999999999999996 54

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=97.28  E-value=0.0001  Score=67.30  Aligned_cols=30  Identities=23%  Similarity=0.298  Sum_probs=28.2

Q ss_pred             CccCCccccCCCCCceEEEEEcCCCCcHHHHH
Q 036363            5 RIDDDCELTSPSNGVRTVVLVGHTGNGKSATG   36 (240)
Q Consensus         5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTli   36 (240)
                      ..+++++|.++.|  ..++|+|+||||||||+
T Consensus       598 ~~Lk~Vsl~I~~G--eiv~I~G~SGSGKSTLl  627 (916)
T 3pih_A          598 NNLKNIDVEIPLG--VFVCVTGVSGSGKSSLV  627 (916)
T ss_dssp             TTCCSEEEEEESS--SEEEEECSTTSSHHHHH
T ss_pred             ccccccceEEcCC--cEEEEEccCCCChhhhH
Confidence            4689999999999  99999999999999997

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=97.26  E-value=0.00022  Score=54.66  Aligned_cols=34  Identities=21%  Similarity=0.252  Sum_probs=23.7

Q ss_pred             CCccccCC---CCCceEEEEEcCCCCcHHHHHHHHhCCC
Q 036363            8 DDCELTSP---SNGVRTVVLVGHTGNGKSATGNSILGRR   43 (240)
Q Consensus         8 ~~~~~~~~---~~~~~~i~lvG~~g~GKSTlin~l~g~~   43 (240)
                      .+.++...   .|  ..|+|.|++||||||+++.|....
T Consensus        14 ~~~~~~~~~~~~g--~~i~i~G~~GsGKsT~~~~l~~~l   50 (229)
T 4eaq_A           14 GTENLYFQSNAMS--AFITFEGPEGSGKTTVINEVYHRL   50 (229)
T ss_dssp             ------CCCCCCC--EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             cCCCeeEeecCCC--eEEEEEcCCCCCHHHHHHHHHHHH
Confidence            34444443   55  899999999999999999997643

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=97.24  E-value=0.00017  Score=57.27  Aligned_cols=27  Identities=26%  Similarity=0.281  Sum_probs=23.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCC
Q 036363           17 NGVRTVVLVGHTGNGKSATGNSILGRR   43 (240)
Q Consensus        17 ~~~~~i~lvG~~g~GKSTlin~l~g~~   43 (240)
                      +....|+|+|++|||||||++.|.+..
T Consensus        29 ~~~~ii~I~G~sGsGKSTla~~L~~~l   55 (290)
T 1odf_A           29 KCPLFIFFSGPQGSGKSFTSIQIYNHL   55 (290)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            344899999999999999999988754

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=97.23  E-value=0.00016  Score=52.94  Aligned_cols=23  Identities=13%  Similarity=0.300  Sum_probs=21.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 036363           20 RTVVLVGHTGNGKSATGNSILGR   42 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~   42 (240)
                      ..++++|++|+|||||++.|++.
T Consensus         7 ~~i~i~G~sGsGKTTl~~~l~~~   29 (174)
T 1np6_A            7 PLLAFAAWSGTGKTTLLKKLIPA   29 (174)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHh
Confidence            68999999999999999999875

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=97.22  E-value=0.00019  Score=52.03  Aligned_cols=22  Identities=18%  Similarity=0.142  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 036363           20 RTVVLVGHTGNGKSATGNSILG   41 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g   41 (240)
                      ..|+|+|++||||||+.+.|..
T Consensus         2 ~~i~l~G~~GsGKsT~~~~L~~   23 (173)
T 3kb2_A            2 TLIILEGPDCCFKSTVAAKLSK   23 (173)
T ss_dssp             CEEEEECSSSSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4789999999999999999864

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=97.21  E-value=8.8e-05  Score=56.09  Aligned_cols=27  Identities=11%  Similarity=-0.034  Sum_probs=24.6

Q ss_pred             cCCCCCceEEEEEcCCCCcHHHHHHHHhC
Q 036363           13 TSPSNGVRTVVLVGHTGNGKSATGNSILG   41 (240)
Q Consensus        13 ~~~~~~~~~i~lvG~~g~GKSTlin~l~g   41 (240)
                      -+++|  ..++|+|++|+|||||+..|++
T Consensus        16 gi~~G--~~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           16 GFAPG--VLTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             SBCTT--SEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCcCC--EEEEEECCCCCCHHHHHHHHHH
Confidence            56777  8999999999999999999987

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=97.20  E-value=0.00038  Score=56.90  Aligned_cols=68  Identities=9%  Similarity=0.016  Sum_probs=46.1

Q ss_pred             cEEEEEeCCCCCCCCCCCcC--CCceEEEEEEECC----------CCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCC
Q 036363           69 QVVNVIDTPGLFDFSAGSEF--DEIHAALVVFSVR----------SRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRD  135 (240)
Q Consensus        69 ~~~~l~DtpG~~~~~~~~~~--~~~~~~l~v~~~~----------~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D  135 (240)
                      ..+.+|||+|...+...+..  ++++++++|++++          +.-+..+ ..++..+.... .....|+++|+||+|
T Consensus       183 v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~-~~~~~piiLvgNK~D  261 (354)
T 2xtz_A          183 EVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQP-CFEKTSFMLFLNKFD  261 (354)
T ss_dssp             -EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCG-GGSSCEEEEEEECHH
T ss_pred             eeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhcc-ccCCCeEEEEEECcc
Confidence            57899999999988877766  9999999999986          2323332 23333333210 112368999999999


Q ss_pred             CC
Q 036363          136 EL  137 (240)
Q Consensus       136 ~~  137 (240)
                      ..
T Consensus       262 L~  263 (354)
T 2xtz_A          262 IF  263 (354)
T ss_dssp             HH
T ss_pred             hh
Confidence            53

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=97.17  E-value=0.00019  Score=57.89  Aligned_cols=31  Identities=23%  Similarity=0.260  Sum_probs=25.7

Q ss_pred             CCccccCCCCCceEEEEEcCCCCcHHHHHHHHhC
Q 036363            8 DDCELTSPSNGVRTVVLVGHTGNGKSATGNSILG   41 (240)
Q Consensus         8 ~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g   41 (240)
                      +.+++.+.+|   ..+|+|+||+|||||+.+|..
T Consensus        16 ~~~~l~~~~g---~~~i~G~NGsGKS~ll~ai~~   46 (322)
T 1e69_A           16 RPSLIGFSDR---VTAIVGPNGSGKSNIIDAIKW   46 (322)
T ss_dssp             SCEEEECCSS---EEEEECCTTTCSTHHHHHHHH
T ss_pred             CCeEEecCCC---cEEEECCCCCcHHHHHHHHHH
Confidence            4556776665   789999999999999999974

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=97.17  E-value=0.00017  Score=53.94  Aligned_cols=23  Identities=35%  Similarity=0.683  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 036363           20 RTVVLVGHTGNGKSATGNSILGR   42 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~   42 (240)
                      ..|+|+|++||||||+.+.|.+.
T Consensus        19 ~~I~l~G~~GsGKSTla~~L~~~   41 (202)
T 3t61_A           19 GSIVVMGVSGSGKSSVGEAIAEA   41 (202)
T ss_dssp             SCEEEECSTTSCHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            58999999999999999998643

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=97.15  E-value=0.00014  Score=55.79  Aligned_cols=28  Identities=11%  Similarity=0.149  Sum_probs=24.6

Q ss_pred             cCCCCCceEEEEEcCCCCcHHHHHHHHhCC
Q 036363           13 TSPSNGVRTVVLVGHTGNGKSATGNSILGR   42 (240)
Q Consensus        13 ~~~~~~~~~i~lvG~~g~GKSTlin~l~g~   42 (240)
                      -+++|  ..++|+|++|+|||||+..|++.
T Consensus        20 gi~~G--~~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           20 GIETG--SITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             SEETT--SEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCcCC--eEEEEECCCCCcHHHHHHHHHHH
Confidence            45667  89999999999999999999983

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=97.12  E-value=0.00027  Score=53.08  Aligned_cols=28  Identities=25%  Similarity=0.412  Sum_probs=21.9

Q ss_pred             ccccCCCCCceEEEEEcCCCCcHHHHHHHHh
Q 036363           10 CELTSPSNGVRTVVLVGHTGNGKSATGNSIL   40 (240)
Q Consensus        10 ~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~   40 (240)
                      ..+...+   ...+|+|+||+||||++.+|.
T Consensus        17 ~~i~f~~---~~~~I~G~NgsGKStil~ai~   44 (203)
T 3qks_A           17 TVVEFKE---GINLIIGQNGSGKSSLLDAIL   44 (203)
T ss_dssp             EEEECCS---EEEEEECCTTSSHHHHHHHHH
T ss_pred             eEEEeCC---CeEEEEcCCCCCHHHHHHHHH
Confidence            3444444   477899999999999999874

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=97.12  E-value=0.0003  Score=51.30  Aligned_cols=22  Identities=23%  Similarity=0.548  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 036363           20 RTVVLVGHTGNGKSATGNSILG   41 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g   41 (240)
                      ..|+++|++||||||+.+.|..
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            5799999999999999999975

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=97.10  E-value=0.00036  Score=51.07  Aligned_cols=23  Identities=30%  Similarity=0.381  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 036363           20 RTVVLVGHTGNGKSATGNSILGR   42 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~   42 (240)
                      ..|+|+|++||||||+.+.|.+.
T Consensus         6 ~~i~l~G~~GsGKST~~~~L~~~   28 (179)
T 2pez_A            6 CTVWLTGLSGAGKTTVSMALEEY   28 (179)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            78999999999999999999764

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=97.10  E-value=0.00029  Score=51.05  Aligned_cols=20  Identities=25%  Similarity=0.585  Sum_probs=18.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHH
Q 036363           20 RTVVLVGHTGNGKSATGNSI   39 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l   39 (240)
                      ..|+|+|++||||||+.+.|
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            47899999999999999998

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=97.10  E-value=0.00037  Score=52.02  Aligned_cols=23  Identities=26%  Similarity=0.421  Sum_probs=20.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhC
Q 036363           19 VRTVVLVGHTGNGKSATGNSILG   41 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g   41 (240)
                      ...|+|+|++||||||+.+.|..
T Consensus        20 ~~~I~l~G~~GsGKST~a~~La~   42 (201)
T 2cdn_A           20 HMRVLLLGPPGAGKGTQAVKLAE   42 (201)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            36899999999999999999864

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=97.09  E-value=9e-05  Score=60.56  Aligned_cols=31  Identities=13%  Similarity=0.134  Sum_probs=27.8

Q ss_pred             cccCCCCCceEEEEEcCCCCcHHHHHHHHhCCC
Q 036363           11 ELTSPSNGVRTVVLVGHTGNGKSATGNSILGRR   43 (240)
Q Consensus        11 ~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~   43 (240)
                      .+.+++|  ..++|+|++|+|||||++.|++..
T Consensus       125 ~ggi~~G--~i~~I~G~~GsGKTTL~~~l~~~~  155 (349)
T 1pzn_A          125 GGGIETQ--AITEVFGEFGSGKTQLAHTLAVMV  155 (349)
T ss_dssp             TSSEESS--EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             cCCCCCC--eEEEEECCCCCCHHHHHHHHHHHh
Confidence            5678888  999999999999999999999864

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=97.09  E-value=0.00046  Score=50.86  Aligned_cols=28  Identities=21%  Similarity=0.267  Sum_probs=23.5

Q ss_pred             CCCCCceEEEEEcCCCCcHHHHHHHHhCCC
Q 036363           14 SPSNGVRTVVLVGHTGNGKSATGNSILGRR   43 (240)
Q Consensus        14 ~~~~~~~~i~lvG~~g~GKSTlin~l~g~~   43 (240)
                      ..++  ..|+|+|.+||||||+.+.|....
T Consensus        10 ~~~~--~~i~l~G~~GsGKsT~~~~L~~~l   37 (186)
T 2yvu_A           10 IEKG--IVVWLTGLPGSGKTTIATRLADLL   37 (186)
T ss_dssp             CSCC--EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cCCC--cEEEEEcCCCCCHHHHHHHHHHHH
Confidence            3445  899999999999999999997643

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=97.05  E-value=0.0004  Score=51.02  Aligned_cols=22  Identities=23%  Similarity=0.560  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 036363           20 RTVVLVGHTGNGKSATGNSILG   41 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g   41 (240)
                      ..|+|+|++||||||+.+.|..
T Consensus         5 ~~I~l~G~~GsGKST~~~~La~   26 (186)
T 3cm0_A            5 QAVIFLGPPGAGKGTQASRLAQ   26 (186)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            6899999999999999999873

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=97.04  E-value=0.00025  Score=59.62  Aligned_cols=31  Identities=19%  Similarity=0.193  Sum_probs=24.8

Q ss_pred             ccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCC
Q 036363           12 LTSPSNGVRTVVLVGHTGNGKSATGNSILGRRA   44 (240)
Q Consensus        12 ~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~   44 (240)
                      +.+..+  ..++|+|+||+|||||+++|.+...
T Consensus        21 ~~~~~~--~~~~i~G~nG~GKstll~ai~~~~~   51 (430)
T 1w1w_A           21 VGFGES--NFTSIIGPNGSGKSNMMDAISFVLG   51 (430)
T ss_dssp             EECTTC--SEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             EEecCC--CEEEEECCCCCCHHHHHHHHHhhhc
Confidence            334444  6899999999999999999987544

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=97.04  E-value=0.00021  Score=56.43  Aligned_cols=28  Identities=21%  Similarity=0.223  Sum_probs=24.1

Q ss_pred             cCCCCCceEEEEEcCCCCcHHHHHHHHhCC
Q 036363           13 TSPSNGVRTVVLVGHTGNGKSATGNSILGR   42 (240)
Q Consensus        13 ~~~~~~~~~i~lvG~~g~GKSTlin~l~g~   42 (240)
                      -+++|  ..++|+|++|+|||||+..|++.
T Consensus        26 gl~~G--~i~~i~G~~GsGKTtl~~~l~~~   53 (279)
T 1nlf_A           26 NMVAG--TVGALVSPGGAGKSMLALQLAAQ   53 (279)
T ss_dssp             TEETT--SEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CccCC--CEEEEEcCCCCCHHHHHHHHHHH
Confidence            35566  89999999999999999998863

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=97.02  E-value=0.00023  Score=57.72  Aligned_cols=24  Identities=29%  Similarity=0.415  Sum_probs=21.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCC
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRR   43 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~   43 (240)
                      ..++|+||+|+|||||++.|++..
T Consensus        52 ~~~ll~Gp~G~GKTTLa~~ia~~l   75 (334)
T 1in4_A           52 DHVLLAGPPGLGKTTLAHIIASEL   75 (334)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHh
Confidence            579999999999999999998754

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=97.02  E-value=0.00046  Score=51.39  Aligned_cols=25  Identities=20%  Similarity=0.284  Sum_probs=22.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCC
Q 036363           18 GVRTVVLVGHTGNGKSATGNSILGR   42 (240)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlin~l~g~   42 (240)
                      ....|+|+|++||||||+.+.|...
T Consensus         7 ~~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            7 HPIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHC
Confidence            3478999999999999999999754

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=97.02  E-value=0.00042  Score=55.21  Aligned_cols=32  Identities=25%  Similarity=0.210  Sum_probs=26.3

Q ss_pred             CCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCC
Q 036363            8 DDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRR   43 (240)
Q Consensus         8 ~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~   43 (240)
                      +++++.  .+  ..++++|++|+||||++..|++..
T Consensus        91 ~~i~~~--~~--~~i~i~g~~G~GKTT~~~~la~~~  122 (295)
T 1ls1_A           91 RLPVLK--DR--NLWFLVGLQGSGKTTTAAKLALYY  122 (295)
T ss_dssp             CCCCCC--SS--EEEEEECCTTTTHHHHHHHHHHHH
T ss_pred             ceeecC--CC--eEEEEECCCCCCHHHHHHHHHHHH
Confidence            456666  45  899999999999999999987653

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=97.02  E-value=0.00031  Score=55.96  Aligned_cols=110  Identities=16%  Similarity=0.188  Sum_probs=60.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCC-------CC---------------CcceeEEEEE-------EEEeCCcE
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRAS-------SS---------------GVTSTCEMHR-------TVLKDGQV   70 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~-------~~---------------~~t~~~~~~~-------~~~~~~~~   70 (240)
                      ..|+++|++|+||||++..|++......+..       ..               +.........       ... .+..
T Consensus       106 ~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~-~~~d  184 (296)
T 2px0_A          106 KYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELF-SEYD  184 (296)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHG-GGSS
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHh-cCCC
Confidence            7999999999999999999875432211110       00               0000000000       001 3457


Q ss_pred             EEEEeCCCCCCCCCCCc-----C---CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363           71 VNVIDTPGLFDFSAGSE-----F---DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDEL  137 (240)
Q Consensus        71 ~~l~DtpG~~~~~~~~~-----~---~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~  137 (240)
                      +.++||||........-     .   ..++.+++|++++..  ..   .+..+...|..  ....-+|+||.|..
T Consensus       185 lvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~---~~~~~~~~~~~--l~~~giVltk~D~~  252 (296)
T 2px0_A          185 HVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YE---DMKHIVKRFSS--VPVNQYIFTKIDET  252 (296)
T ss_dssp             EEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HH---HHHHHTTTTSS--SCCCEEEEECTTTC
T ss_pred             EEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HH---HHHHHHHHHhc--CCCCEEEEeCCCcc
Confidence            88999999886432110     0   247788888887632  22   23333333331  23355778999954

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=97.01  E-value=0.0002  Score=58.24  Aligned_cols=37  Identities=24%  Similarity=0.244  Sum_probs=30.1

Q ss_pred             ccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCC
Q 036363            6 IDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGR   42 (240)
Q Consensus         6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~   42 (240)
                      +++.+++.+..|....|+|+|++|+||||+.+.|++.
T Consensus        11 il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~   47 (359)
T 2ga8_A           11 VLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQI   47 (359)
T ss_dssp             HHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             HHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHH
Confidence            3455667777886678999999999999999988764

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=97.01  E-value=0.00044  Score=50.45  Aligned_cols=23  Identities=26%  Similarity=0.400  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 036363           20 RTVVLVGHTGNGKSATGNSILGR   42 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~   42 (240)
                      ..|+|+|++||||||+.+.|...
T Consensus         4 ~~i~l~G~~GsGKST~a~~La~~   26 (178)
T 1qhx_A            4 RMIILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            57999999999999999999754

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=96.99  E-value=0.00055  Score=50.53  Aligned_cols=22  Identities=18%  Similarity=0.502  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 036363           20 RTVVLVGHTGNGKSATGNSILG   41 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g   41 (240)
                      ..|+|+|++||||||+.+.|..
T Consensus         6 ~~I~l~G~~GsGKST~~~~L~~   27 (193)
T 2rhm_A            6 ALIIVTGHPATGKTTLSQALAT   27 (193)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            7899999999999999999864

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=96.99  E-value=0.00042  Score=50.88  Aligned_cols=22  Identities=27%  Similarity=0.613  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 036363           20 RTVVLVGHTGNGKSATGNSILG   41 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g   41 (240)
                      ..|+++|++||||||+.+.|..
T Consensus         6 ~~i~l~G~~GsGKst~a~~La~   27 (185)
T 3trf_A            6 TNIYLIGLMGAGKTSVGSQLAK   27 (185)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            6899999999999999999863

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=96.98  E-value=0.00043  Score=51.56  Aligned_cols=22  Identities=27%  Similarity=0.525  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCC
Q 036363           21 TVVLVGHTGNGKSATGNSILGR   42 (240)
Q Consensus        21 ~i~lvG~~g~GKSTlin~l~g~   42 (240)
                      .|+|+|++||||||+.+.|...
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~   23 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKK   23 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHHh
Confidence            6899999999999999998753

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=96.98  E-value=0.00023  Score=61.60  Aligned_cols=29  Identities=28%  Similarity=0.395  Sum_probs=25.1

Q ss_pred             CCCCCceEEEEEcCCCCcHHHHHHHHhCCCC
Q 036363           14 SPSNGVRTVVLVGHTGNGKSATGNSILGRRA   44 (240)
Q Consensus        14 ~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~   44 (240)
                      +..|  ..|+|+|++|||||||++.|.+...
T Consensus       366 ~~~G--~iI~LiG~sGSGKSTLar~La~~L~  394 (552)
T 3cr8_A          366 ERQG--FTVFFTGLSGAGKSTLARALAARLM  394 (552)
T ss_dssp             GGSC--EEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred             cccc--eEEEEECCCCChHHHHHHHHHHhhc
Confidence            4456  8999999999999999999988653

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=96.97  E-value=0.0005  Score=50.68  Aligned_cols=23  Identities=22%  Similarity=0.268  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 036363           20 RTVVLVGHTGNGKSATGNSILGR   42 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~   42 (240)
                      ..|+|+|++||||||+.+.|...
T Consensus         2 ~~I~i~G~~GsGKsT~~~~L~~~   24 (194)
T 1nks_A            2 KIGIVTGIPGVGKSTVLAKVKEI   24 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999998753

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.96  E-value=0.0034  Score=52.57  Aligned_cols=23  Identities=26%  Similarity=0.520  Sum_probs=21.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 036363           20 RTVVLVGHTGNGKSATGNSILGR   42 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~   42 (240)
                      .-|+|.||+|+|||+|.+++++.
T Consensus       216 rGvLL~GPPGtGKTllAkAiA~e  238 (437)
T 4b4t_L          216 KGVLLYGPPGTGKTLLAKAVAAT  238 (437)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            78999999999999999999864

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=96.94  E-value=0.00042  Score=59.20  Aligned_cols=35  Identities=26%  Similarity=0.394  Sum_probs=28.0

Q ss_pred             CccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCC
Q 036363            5 RIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRR   43 (240)
Q Consensus         5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~   43 (240)
                      ..+.++++.++.|    |+|+|++|+|||||+++|.+..
T Consensus        54 ~~~~~lg~~ip~G----vLL~GppGtGKTtLaraIa~~~   88 (499)
T 2dhr_A           54 SRFHEMGARIPKG----VLLVGPPGVGKTHLARAVAGEA   88 (499)
T ss_dssp             GGTTTTSCCCCSE----EEEECSSSSSHHHHHHHHHHHT
T ss_pred             hhhhhccCCCCce----EEEECCCCCCHHHHHHHHHHHh
Confidence            3456666666654    9999999999999999998753

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=96.93  E-value=0.00055  Score=50.08  Aligned_cols=21  Identities=29%  Similarity=0.621  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 036363           20 RTVVLVGHTGNGKSATGNSIL   40 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~   40 (240)
                      ..|+|+|++|+||||+.+.|.
T Consensus        12 ~~i~i~G~~GsGKst~~~~l~   32 (180)
T 3iij_A           12 PNILLTGTPGVGKTTLGKELA   32 (180)
T ss_dssp             CCEEEECSTTSSHHHHHHHHH
T ss_pred             CeEEEEeCCCCCHHHHHHHHH
Confidence            689999999999999999987

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=96.92  E-value=0.00056  Score=50.36  Aligned_cols=22  Identities=23%  Similarity=0.483  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 036363           20 RTVVLVGHTGNGKSATGNSILG   41 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g   41 (240)
                      ..|+|.|++||||||+.+.|..
T Consensus         4 ~~I~i~G~~GsGKsT~~~~L~~   25 (192)
T 1kht_A            4 KVVVVTGVPGVGSTTSSQLAMD   25 (192)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            6899999999999999999864

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=96.92  E-value=0.00078  Score=50.26  Aligned_cols=24  Identities=21%  Similarity=0.472  Sum_probs=21.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhC
Q 036363           18 GVRTVVLVGHTGNGKSATGNSILG   41 (240)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlin~l~g   41 (240)
                      ....|+|+|++||||||+.+.|..
T Consensus        14 ~~~~I~l~G~~GsGKsT~~~~L~~   37 (203)
T 1ukz_A           14 QVSVIFVLGGPGAGKGTQCEKLVK   37 (203)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            347899999999999999999874

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=96.91  E-value=0.00058  Score=53.09  Aligned_cols=22  Identities=23%  Similarity=0.229  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 036363           20 RTVVLVGHTGNGKSATGNSILG   41 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g   41 (240)
                      ..|+|+|++|||||||.+.|+.
T Consensus         2 ~li~I~G~~GSGKSTla~~La~   23 (253)
T 2ze6_A            2 LLHLIYGPTCSGKTDMAIQIAQ   23 (253)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHh
Confidence            4689999999999999999875

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=96.91  E-value=0.00059  Score=49.57  Aligned_cols=24  Identities=17%  Similarity=0.210  Sum_probs=21.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCC
Q 036363           19 VRTVVLVGHTGNGKSATGNSILGR   42 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g~   42 (240)
                      ...++++|++|+|||||+..|+..
T Consensus         4 ~~~i~i~G~sGsGKTTl~~~L~~~   27 (169)
T 1xjc_A            4 MNVWQVVGYKHSGKTTLMEKWVAA   27 (169)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHh
Confidence            368999999999999999999864

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=96.88  E-value=0.00062  Score=51.30  Aligned_cols=29  Identities=21%  Similarity=0.241  Sum_probs=24.2

Q ss_pred             cCCCCCceEEEEEcCCCCcHHHHHHHHhCCC
Q 036363           13 TSPSNGVRTVVLVGHTGNGKSATGNSILGRR   43 (240)
Q Consensus        13 ~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~   43 (240)
                      ....+  ..|+|+|++|+||||+.+.|.+..
T Consensus        21 ~~~~~--~~i~~~G~~GsGKsT~~~~l~~~l   49 (211)
T 1m7g_A           21 RNQRG--LTIWLTGLSASGKSTLAVELEHQL   49 (211)
T ss_dssp             HTSSC--EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             cCCCC--CEEEEECCCCCCHHHHHHHHHHHh
Confidence            34556  899999999999999999987643

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=96.88  E-value=0.00067  Score=50.97  Aligned_cols=22  Identities=27%  Similarity=0.413  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 036363           20 RTVVLVGHTGNGKSATGNSILG   41 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g   41 (240)
                      ..|+|+|++||||||+.+.|..
T Consensus        10 ~~I~l~G~~GsGKsT~~~~L~~   31 (215)
T 1nn5_A           10 ALIVLEGVDRAGKSTQSRKLVE   31 (215)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            7899999999999999999874

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=96.87  E-value=0.00067  Score=53.81  Aligned_cols=23  Identities=26%  Similarity=0.492  Sum_probs=20.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhC
Q 036363           19 VRTVVLVGHTGNGKSATGNSILG   41 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g   41 (240)
                      ...|+|+|++||||||+.+.|..
T Consensus        33 ~~livl~G~sGsGKSTla~~L~~   55 (287)
T 1gvn_B           33 PTAFLLGGQPGSGKTSLRSAIFE   55 (287)
T ss_dssp             CEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            37899999999999999999964

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=96.87  E-value=0.00069  Score=50.00  Aligned_cols=22  Identities=27%  Similarity=0.453  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 036363           20 RTVVLVGHTGNGKSATGNSILG   41 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g   41 (240)
                      ..|+|+|++||||||+.+.|..
T Consensus         4 ~~I~l~G~~GsGKsT~a~~L~~   25 (196)
T 1tev_A            4 LVVFVLGGPGAGKGTQCARIVE   25 (196)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            6899999999999999998863

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=96.86  E-value=0.00067  Score=55.73  Aligned_cols=32  Identities=16%  Similarity=0.108  Sum_probs=28.4

Q ss_pred             CccccCCCCCceEEEEEcCCCCcHHHHHHHHhCC
Q 036363            9 DCELTSPSNGVRTVVLVGHTGNGKSATGNSILGR   42 (240)
Q Consensus         9 ~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~   42 (240)
                      |+.+++.+|  .+++|+|++|+|||||++.|.+.
T Consensus       166 D~~~pi~rG--Qr~~IvG~sG~GKTtLl~~Iar~  197 (422)
T 3ice_A          166 DLASPIGRG--QRGLIVAPPKAGKTMLLQNIAQS  197 (422)
T ss_dssp             HHHSCCBTT--CEEEEECCSSSSHHHHHHHHHHH
T ss_pred             eeeeeecCC--cEEEEecCCCCChhHHHHHHHHH
Confidence            677888888  89999999999999999988753

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=96.86  E-value=0.00062  Score=51.35  Aligned_cols=21  Identities=33%  Similarity=0.669  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhC
Q 036363           21 TVVLVGHTGNGKSATGNSILG   41 (240)
Q Consensus        21 ~i~lvG~~g~GKSTlin~l~g   41 (240)
                      +|+|+|++||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIE   22 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999853

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=96.84  E-value=0.00085  Score=50.32  Aligned_cols=22  Identities=23%  Similarity=0.413  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 036363           20 RTVVLVGHTGNGKSATGNSILG   41 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g   41 (240)
                      ..|+|.|.+||||||+.+.|..
T Consensus        11 ~~I~l~G~~GsGKST~~~~L~~   32 (212)
T 2wwf_A           11 KFIVFEGLDRSGKSTQSKLLVE   32 (212)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHH
Confidence            7899999999999999999864

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=96.83  E-value=0.00056  Score=49.84  Aligned_cols=22  Identities=27%  Similarity=0.635  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 036363           20 RTVVLVGHTGNGKSATGNSILG   41 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g   41 (240)
                      .+|+|+|++||||||+.+.|..
T Consensus         5 ~~i~i~G~~GsGKsTla~~La~   26 (175)
T 1via_A            5 KNIVFIGFMGSGKSTLARALAK   26 (175)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHH
Confidence            3699999999999999999864

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=96.82  E-value=0.00074  Score=49.95  Aligned_cols=22  Identities=27%  Similarity=0.539  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 036363           20 RTVVLVGHTGNGKSATGNSILG   41 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g   41 (240)
                      ..|+|+|++||||||+.+.|..
T Consensus        10 ~~I~l~G~~GsGKsT~~~~La~   31 (196)
T 2c95_A           10 NIIFVVGGPGSGKGTQCEKIVQ   31 (196)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            6899999999999999999863

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=96.82  E-value=0.00084  Score=50.01  Aligned_cols=23  Identities=22%  Similarity=0.343  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 036363           20 RTVVLVGHTGNGKSATGNSILGR   42 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~   42 (240)
                      ..|+|+|++||||||+.+.|...
T Consensus         5 ~~I~l~G~~GsGKsT~~~~L~~~   27 (204)
T 2v54_A            5 ALIVFEGLDKSGKTTQCMNIMES   27 (204)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHT
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHH
Confidence            78999999999999999999764

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=96.81  E-value=0.0007  Score=51.08  Aligned_cols=21  Identities=38%  Similarity=0.722  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhC
Q 036363           21 TVVLVGHTGNGKSATGNSILG   41 (240)
Q Consensus        21 ~i~lvG~~g~GKSTlin~l~g   41 (240)
                      +|+|+|++||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVE   22 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999864

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=96.80  E-value=0.00088  Score=50.64  Aligned_cols=22  Identities=36%  Similarity=0.533  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 036363           20 RTVVLVGHTGNGKSATGNSILG   41 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g   41 (240)
                      ..|+|.|++||||||+.+.|..
T Consensus         5 ~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            5 YIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            7899999999999999999975

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=96.79  E-value=0.00056  Score=53.14  Aligned_cols=24  Identities=21%  Similarity=0.302  Sum_probs=21.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCC
Q 036363           19 VRTVVLVGHTGNGKSATGNSILGR   42 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g~   42 (240)
                      +..|+++|++||||||+.+.|...
T Consensus        32 ~~~i~l~G~~GsGKSTla~~L~~~   55 (253)
T 2p5t_B           32 PIAILLGGQSGAGKTTIHRIKQKE   55 (253)
T ss_dssp             CEEEEEESCGGGTTHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHh
Confidence            389999999999999999998653

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=96.79  E-value=0.00082  Score=54.58  Aligned_cols=21  Identities=33%  Similarity=0.610  Sum_probs=18.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 036363           20 RTVVLVGHTGNGKSATGNSIL   40 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~   40 (240)
                      ...+|+|+||+||||++.+|+
T Consensus        24 ~~~~i~G~NGsGKS~lleAi~   44 (339)
T 3qkt_A           24 GINLIIGQNGSGKSSLLDAIL   44 (339)
T ss_dssp             EEEEEECCTTSSHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHH
Confidence            366899999999999999874

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=96.78  E-value=0.00096  Score=49.96  Aligned_cols=22  Identities=23%  Similarity=0.376  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 036363           20 RTVVLVGHTGNGKSATGNSILG   41 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g   41 (240)
                      ..|+|.|++||||||+.+.|..
T Consensus         5 ~~I~i~G~~GsGKsT~~~~L~~   26 (213)
T 2plr_A            5 VLIAFEGIDGSGKSSQATLLKD   26 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Confidence            7899999999999999999875

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=96.76  E-value=9.4e-05  Score=55.36  Aligned_cols=67  Identities=3%  Similarity=-0.020  Sum_probs=40.4

Q ss_pred             CcEEEEEeCCCCCCCCCCCcCCCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCC
Q 036363           68 GQVVNVIDTPGLFDFSAGSEFDEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRD  135 (240)
Q Consensus        68 ~~~~~l~DtpG~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D  135 (240)
                      ...+.|+|||+............+|.+++++.++ ..+......++.+..........++.+|+|+.+
T Consensus        75 ~yD~viiD~~~~~~~~~~~~l~~ad~viiv~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~  141 (206)
T 4dzz_A           75 DYDFAIVDGAGSLSVITSAAVMVSDLVIIPVTPS-PLDFSAAGSVVTVLEAQAYSRKVEARFLITRKI  141 (206)
T ss_dssp             TSSEEEEECCSSSSHHHHHHHHHCSEEEEEECSC-TTTHHHHHHHHHHHTTSCGGGCCEEEEEECSBC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCEEEEEecCC-HHHHHHHHHHHHHHHHHHhCCCCcEEEEEeccC
Confidence            4578999999866322111116688899999887 444333455555543211122235689999998

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=96.75  E-value=0.00037  Score=52.42  Aligned_cols=22  Identities=23%  Similarity=0.410  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCC
Q 036363           21 TVVLVGHTGNGKSATGNSILGR   42 (240)
Q Consensus        21 ~i~lvG~~g~GKSTlin~l~g~   42 (240)
                      .|+|+|++||||||+++.|...
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~   23 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGA   23 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            6899999999999999998754

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.74  E-value=0.0066  Score=50.75  Aligned_cols=23  Identities=30%  Similarity=0.499  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 036363           20 RTVVLVGHTGNGKSATGNSILGR   42 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~   42 (240)
                      .-|+|.||+|+|||+|.+++++.
T Consensus       207 rGiLL~GPPGtGKT~lakAiA~~  229 (428)
T 4b4t_K          207 RGVLLYGPPGTGKTMLVKAVANS  229 (428)
T ss_dssp             CEEEEESCTTTTHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            67999999999999999999864

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=96.73  E-value=0.0013  Score=48.37  Aligned_cols=22  Identities=27%  Similarity=0.522  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 036363           20 RTVVLVGHTGNGKSATGNSILG   41 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g   41 (240)
                      ..|+|+|++||||||+.+.|..
T Consensus         7 ~~I~l~G~~GsGKsT~~~~L~~   28 (194)
T 1qf9_A            7 NVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            6899999999999999999863

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=96.73  E-value=0.00088  Score=51.03  Aligned_cols=22  Identities=27%  Similarity=0.492  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 036363           20 RTVVLVGHTGNGKSATGNSILG   41 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g   41 (240)
                      ..|+|+|++||||||+.+.|..
T Consensus         8 ~~I~l~G~~GsGKsT~a~~La~   29 (227)
T 1zd8_A            8 LRAVIMGAPGSGKGTVSSRITT   29 (227)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            6899999999999999999873

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=96.73  E-value=0.001  Score=50.40  Aligned_cols=22  Identities=27%  Similarity=0.502  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 036363           20 RTVVLVGHTGNGKSATGNSILG   41 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g   41 (240)
                      ..|+|+|++||||||+.+.|..
T Consensus         5 ~~I~l~G~~GsGKsT~a~~La~   26 (220)
T 1aky_A            5 IRMVLIGPPGAGKGTQAPNLQE   26 (220)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            7899999999999999999864

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=96.72  E-value=0.0011  Score=51.27  Aligned_cols=23  Identities=17%  Similarity=0.346  Sum_probs=20.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhC
Q 036363           19 VRTVVLVGHTGNGKSATGNSILG   41 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g   41 (240)
                      +.+|+|+|++||||||+.+.|..
T Consensus        29 ~~~I~l~G~~GsGKsT~a~~L~~   51 (243)
T 3tlx_A           29 DGRYIFLGAPGSGKGTQSLNLKK   51 (243)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            37999999999999999999863

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=96.69  E-value=0.001  Score=50.98  Aligned_cols=21  Identities=29%  Similarity=0.465  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 036363           20 RTVVLVGHTGNGKSATGNSIL   40 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~   40 (240)
                      ..|+|.|++||||||+.+.|.
T Consensus        10 ~~i~i~G~~GsGKsTla~~la   30 (233)
T 3r20_A           10 LVVAVDGPAGTGKSSVSRGLA   30 (233)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            689999999999999999997

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=96.69  E-value=0.001  Score=49.33  Aligned_cols=22  Identities=18%  Similarity=0.570  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 036363           20 RTVVLVGHTGNGKSATGNSILG   41 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g   41 (240)
                      ..|+|+|++||||||+.+.|..
T Consensus        13 ~~I~l~G~~GsGKsT~a~~L~~   34 (199)
T 2bwj_A           13 KIIFIIGGPGSGKGTQCEKLVE   34 (199)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            6899999999999999999864

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.67  E-value=0.0087  Score=49.86  Aligned_cols=23  Identities=26%  Similarity=0.566  Sum_probs=21.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 036363           20 RTVVLVGHTGNGKSATGNSILGR   42 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~   42 (240)
                      .-|+|.||+|+|||+|.+++++.
T Consensus       217 rGvLLyGPPGTGKTlLAkAiA~e  239 (437)
T 4b4t_I          217 KGVILYGAPGTGKTLLAKAVANQ  239 (437)
T ss_dssp             SEEEEESSTTTTHHHHHHHHHHH
T ss_pred             CCCceECCCCchHHHHHHHHHHH
Confidence            67999999999999999999864

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=96.67  E-value=0.00086  Score=50.87  Aligned_cols=22  Identities=23%  Similarity=0.311  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 036363           20 RTVVLVGHTGNGKSATGNSILG   41 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g   41 (240)
                      ..|+|+|++||||||+.+.|..
T Consensus         6 ~~I~l~G~~GsGKsT~~~~La~   27 (222)
T 1zak_A            6 LKVMISGAPASGKGTQCELIKT   27 (222)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            6899999999999999999863

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=96.66  E-value=0.0015  Score=51.60  Aligned_cols=24  Identities=29%  Similarity=0.531  Sum_probs=21.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHh
Q 036363           17 NGVRTVVLVGHTGNGKSATGNSIL   40 (240)
Q Consensus        17 ~~~~~i~lvG~~g~GKSTlin~l~   40 (240)
                      +.+..|+|+|++||||||+.+.|.
T Consensus        73 ~~~~iI~I~G~~GSGKSTva~~La   96 (281)
T 2f6r_A           73 SGLYVLGLTGISGSGKSSVAQRLK   96 (281)
T ss_dssp             TTCEEEEEEECTTSCHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHH
Confidence            345899999999999999999986

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=96.65  E-value=0.0012  Score=47.62  Aligned_cols=21  Identities=29%  Similarity=0.499  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhC
Q 036363           21 TVVLVGHTGNGKSATGNSILG   41 (240)
Q Consensus        21 ~i~lvG~~g~GKSTlin~l~g   41 (240)
                      +|+|.|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSR   22 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999864

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=96.65  E-value=0.00072  Score=58.32  Aligned_cols=32  Identities=16%  Similarity=0.170  Sum_probs=27.2

Q ss_pred             cccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCC
Q 036363           11 ELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRA   44 (240)
Q Consensus        11 ~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~   44 (240)
                      ...+++|  ..++|+|+||+|||||++.|++...
T Consensus       275 ~g~i~~G--~i~~i~G~~GsGKSTLl~~l~g~~~  306 (525)
T 1tf7_A          275 GGGFFKD--SIILATGATGTGKTLLVSRFVENAC  306 (525)
T ss_dssp             TSSEESS--CEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             CCCCCCC--cEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            3466777  8999999999999999999998643

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=96.63  E-value=0.00021  Score=62.70  Aligned_cols=38  Identities=24%  Similarity=0.378  Sum_probs=31.4

Q ss_pred             CccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCC
Q 036363            5 RIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRA   44 (240)
Q Consensus         5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~   44 (240)
                      .+.+.+++.+..+  ..++|+|++|+|||||+++|.+...
T Consensus        48 ~~l~~l~~~i~~g--~~vll~Gp~GtGKTtlar~ia~~l~   85 (604)
T 3k1j_A           48 HAVEVIKTAANQK--RHVLLIGEPGTGKSMLGQAMAELLP   85 (604)
T ss_dssp             HHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred             hhHhhccccccCC--CEEEEEeCCCCCHHHHHHHHhccCC
Confidence            3455666777777  7999999999999999999998754

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=96.62  E-value=0.0013  Score=50.34  Aligned_cols=22  Identities=23%  Similarity=0.333  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 036363           20 RTVVLVGHTGNGKSATGNSILG   41 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g   41 (240)
                      ..|+|+|++|+||||+.+.|.+
T Consensus        17 ~~i~i~G~~gsGKst~~~~l~~   38 (236)
T 1q3t_A           17 IQIAIDGPASSGKSTVAKIIAK   38 (236)
T ss_dssp             CEEEEECSSCSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            7999999999999999999875

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.61  E-value=0.0067  Score=50.20  Aligned_cols=23  Identities=26%  Similarity=0.515  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 036363           20 RTVVLVGHTGNGKSATGNSILGR   42 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~   42 (240)
                      .-|.|.||+|+|||+|.+++++.
T Consensus       183 rGvLL~GPPGTGKTllAkAiA~e  205 (405)
T 4b4t_J          183 KGVILYGPPGTGKTLLARAVAHH  205 (405)
T ss_dssp             CCEEEESCSSSSHHHHHHHHHHH
T ss_pred             CceEEeCCCCCCHHHHHHHHHHh
Confidence            57999999999999999999864

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=96.61  E-value=0.00082  Score=51.59  Aligned_cols=29  Identities=28%  Similarity=0.377  Sum_probs=23.5

Q ss_pred             cccCCCCCceEEEEEcCCCCcHHHHHHHHhC
Q 036363           11 ELTSPSNGVRTVVLVGHTGNGKSATGNSILG   41 (240)
Q Consensus        11 ~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g   41 (240)
                      .--+++|  ..++|+|++|+|||||+..++.
T Consensus        17 ~gGl~~G--~~~~i~G~~GsGKTtl~~~~~~   45 (247)
T 2dr3_A           17 HGGIPER--NVVLLSGGPGTGKTIFSQQFLW   45 (247)
T ss_dssp             TTSEETT--CEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCCCCC--cEEEEECCCCCCHHHHHHHHHH
Confidence            4456677  8999999999999999776653

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=96.61  E-value=0.0012  Score=48.61  Aligned_cols=21  Identities=19%  Similarity=0.465  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhC
Q 036363           21 TVVLVGHTGNGKSATGNSILG   41 (240)
Q Consensus        21 ~i~lvG~~g~GKSTlin~l~g   41 (240)
                      .|+|.|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~   22 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYE   22 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999864

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=96.61  E-value=0.00089  Score=48.96  Aligned_cols=22  Identities=23%  Similarity=0.359  Sum_probs=16.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 036363           20 RTVVLVGHTGNGKSATGNSILG   41 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g   41 (240)
                      ..|+|.|.+||||||+.+.|..
T Consensus         6 ~~I~l~G~~GsGKST~a~~La~   27 (183)
T 2vli_A            6 PIIWINGPFGVGKTHTAHTLHE   27 (183)
T ss_dssp             CEEEEECCC----CHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            6899999999999999999864

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=96.61  E-value=0.0014  Score=50.86  Aligned_cols=24  Identities=25%  Similarity=0.256  Sum_probs=21.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhC
Q 036363           18 GVRTVVLVGHTGNGKSATGNSILG   41 (240)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlin~l~g   41 (240)
                      .+..|+|.|++||||||+.+.|..
T Consensus        21 ~~~iI~I~G~~GSGKST~a~~L~~   44 (252)
T 1uj2_A           21 EPFLIGVSGGTASGKSSVCAKIVQ   44 (252)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHH
Confidence            347899999999999999999865

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=96.60  E-value=0.001  Score=48.10  Aligned_cols=22  Identities=23%  Similarity=0.536  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 036363           20 RTVVLVGHTGNGKSATGNSILG   41 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g   41 (240)
                      ..|+|+|++||||||+.+.|..
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~   24 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELAR   24 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999999864

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=96.60  E-value=0.0014  Score=51.05  Aligned_cols=22  Identities=27%  Similarity=0.446  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 036363           20 RTVVLVGHTGNGKSATGNSILG   41 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g   41 (240)
                      ..|+|+|.+||||||+.+.|..
T Consensus         5 ~lIvl~G~pGSGKSTla~~La~   26 (260)
T 3a4m_A            5 MLIILTGLPGVGKSTFSKNLAK   26 (260)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHH
Confidence            6899999999999999999864

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=96.60  E-value=0.0012  Score=49.74  Aligned_cols=21  Identities=24%  Similarity=0.466  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhC
Q 036363           21 TVVLVGHTGNGKSATGNSILG   41 (240)
Q Consensus        21 ~i~lvG~~g~GKSTlin~l~g   41 (240)
                      +|+|+|++||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIME   22 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999853

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=96.59  E-value=0.001  Score=51.66  Aligned_cols=23  Identities=35%  Similarity=0.677  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 036363           20 RTVVLVGHTGNGKSATGNSILGR   42 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~   42 (240)
                      ..++|+|++|+|||||+++|.+.
T Consensus        46 ~~vll~G~~GtGKT~la~~la~~   68 (257)
T 1lv7_A           46 KGVLMVGPPGTGKTLLAKAIAGE   68 (257)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEECcCCCCHHHHHHHHHHH
Confidence            46999999999999999999864

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.56  E-value=0.00021  Score=58.07  Aligned_cols=35  Identities=14%  Similarity=0.189  Sum_probs=25.8

Q ss_pred             CccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCC
Q 036363            9 DCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRR   43 (240)
Q Consensus         9 ~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~   43 (240)
                      .++..+..|....++|.||+|+||||+++.+++..
T Consensus        36 ~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l   70 (340)
T 1sxj_C           36 TVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREI   70 (340)
T ss_dssp             HHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence            33444455533348999999999999999998753

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=96.54  E-value=0.0017  Score=48.24  Aligned_cols=24  Identities=21%  Similarity=0.293  Sum_probs=21.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhC
Q 036363           18 GVRTVVLVGHTGNGKSATGNSILG   41 (240)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlin~l~g   41 (240)
                      ....|+|+|.+||||||+.+.|..
T Consensus        11 ~~~iIgltG~~GSGKSTva~~L~~   34 (192)
T 2grj_A           11 HHMVIGVTGKIGTGKSTVCEILKN   34 (192)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHH
Confidence            347899999999999999999864

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=96.53  E-value=0.0011  Score=54.61  Aligned_cols=29  Identities=21%  Similarity=0.472  Sum_probs=22.6

Q ss_pred             CccccCCCCCceEEEEEcCCCCcHHHHHHHHh
Q 036363            9 DCELTSPSNGVRTVVLVGHTGNGKSATGNSIL   40 (240)
Q Consensus         9 ~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~   40 (240)
                      +..+...+|   ..+|+|+||+||||++.+|.
T Consensus        18 ~~~i~f~~g---l~vi~G~NGaGKT~ileAI~   46 (371)
T 3auy_A           18 NSRIKFEKG---IVAIIGENGSGKSSIFEAVF   46 (371)
T ss_dssp             EEEEECCSE---EEEEEECTTSSHHHHHHHHH
T ss_pred             ceEEecCCC---eEEEECCCCCCHHHHHHHHH
Confidence            344555454   77899999999999999974

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=96.52  E-value=0.0016  Score=46.99  Aligned_cols=23  Identities=30%  Similarity=0.518  Sum_probs=20.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhC
Q 036363           19 VRTVVLVGHTGNGKSATGNSILG   41 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g   41 (240)
                      ..+|+|.|.+||||||+.+.|..
T Consensus         7 ~~~i~l~G~~GsGKSTva~~La~   29 (168)
T 1zuh_A            7 MQHLVLIGFMGSGKSSLAQELGL   29 (168)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHHH
T ss_pred             cceEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999853

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=96.52  E-value=0.0015  Score=49.60  Aligned_cols=21  Identities=29%  Similarity=0.667  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhC
Q 036363           21 TVVLVGHTGNGKSATGNSILG   41 (240)
Q Consensus        21 ~i~lvG~~g~GKSTlin~l~g   41 (240)
                      .|+|+|++||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~   22 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKD   22 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999853

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=96.47  E-value=0.0032  Score=52.57  Aligned_cols=25  Identities=36%  Similarity=0.348  Sum_probs=21.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCC
Q 036363           18 GVRTVVLVGHTGNGKSATGNSILGR   42 (240)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlin~l~g~   42 (240)
                      ....|+++|++||||||+.+.|+..
T Consensus       257 ~~~lIil~G~pGSGKSTla~~L~~~  281 (416)
T 3zvl_A          257 NPEVVVAVGFPGAGKSTFIQEHLVS  281 (416)
T ss_dssp             SCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHh
Confidence            3478999999999999999998753

>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}

Probab=96.46  E-value=0.00073  Score=58.16  Aligned_cols=32  Identities=25%  Similarity=0.255  Sum_probs=26.6

Q ss_pred             ccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHh
Q 036363            6 IDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSIL   40 (240)
Q Consensus         6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~   40 (240)
                      .++++++.+.+|   ..+|+|+||+|||||+.+|.
T Consensus        50 ~~~~~~l~f~~g---~n~i~G~NGaGKS~lleAl~   81 (517)
T 4ad8_A           50 TITQLELELGGG---FCAFTGETGAGKSIIVDALG   81 (517)
T ss_dssp             TBSCEEEECCCS---EEEEEESHHHHHHHHTHHHH
T ss_pred             ceeeEEEecCCC---eEEEEcCCCCCHHHHHHHHH
Confidence            456677777776   67899999999999999984

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=96.45  E-value=0.0016  Score=47.67  Aligned_cols=22  Identities=41%  Similarity=0.631  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 036363           20 RTVVLVGHTGNGKSATGNSILG   41 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g   41 (240)
                      ..|+|+|++||||||+.+.|..
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~   24 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAK   24 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999998853

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=96.43  E-value=0.0019  Score=48.61  Aligned_cols=22  Identities=23%  Similarity=0.502  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCC
Q 036363           21 TVVLVGHTGNGKSATGNSILGR   42 (240)
Q Consensus        21 ~i~lvG~~g~GKSTlin~l~g~   42 (240)
                      +|+|+|++||||+|....|+..
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~~   23 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAKE   23 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5889999999999999998743

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=96.42  E-value=0.0028  Score=48.04  Aligned_cols=23  Identities=17%  Similarity=0.557  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 036363           20 RTVVLVGHTGNGKSATGNSILGR   42 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~   42 (240)
                      ..|.|+|++||||+|....|+..
T Consensus        30 kiI~llGpPGsGKgTqa~~L~~~   52 (217)
T 3umf_A           30 KVIFVLGGPGSGKGTQCEKLVQK   52 (217)
T ss_dssp             EEEEEECCTTCCHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            67888999999999999988743

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=96.42  E-value=0.00095  Score=57.79  Aligned_cols=31  Identities=23%  Similarity=0.265  Sum_probs=25.1

Q ss_pred             ccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCC
Q 036363           10 CELTSPSNGVRTVVLVGHTGNGKSATGNSILGRR   43 (240)
Q Consensus        10 ~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~   43 (240)
                      +++.. ++  ..++|+||+|+|||||+++|.+..
T Consensus       102 ~~~~~-~g--~~vll~Gp~GtGKTtlar~ia~~l  132 (543)
T 3m6a_A          102 LTKSL-KG--PILCLAGPPGVGKTSLAKSIAKSL  132 (543)
T ss_dssp             HSSSC-CS--CEEEEESSSSSSHHHHHHHHHHHH
T ss_pred             hcccC-CC--CEEEEECCCCCCHHHHHHHHHHhc
Confidence            34444 34  799999999999999999998754

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=96.42  E-value=0.0021  Score=46.90  Aligned_cols=23  Identities=35%  Similarity=0.543  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 036363           20 RTVVLVGHTGNGKSATGNSILGR   42 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~   42 (240)
                      ..++|.|++|+|||++++.++..
T Consensus        44 ~~~ll~G~~G~GKT~l~~~~~~~   66 (195)
T 1jbk_A           44 NNPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHHHHH
Confidence            67999999999999999998754

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=96.41  E-value=0.0019  Score=51.42  Aligned_cols=27  Identities=22%  Similarity=0.407  Sum_probs=23.1

Q ss_pred             CCCCCceEEEEEcCCCCcHHHHHHHHhCC
Q 036363           14 SPSNGVRTVVLVGHTGNGKSATGNSILGR   42 (240)
Q Consensus        14 ~~~~~~~~i~lvG~~g~GKSTlin~l~g~   42 (240)
                      +..+  ..|+|.|++|+|||+|+++|.+.
T Consensus        46 ~~~~--~~vLL~Gp~GtGKT~la~ala~~   72 (301)
T 3cf0_A           46 MTPS--KGVLFYGPPGCGKTLLAKAIANE   72 (301)
T ss_dssp             CCCC--SEEEEECSSSSSHHHHHHHHHHH
T ss_pred             CCCC--ceEEEECCCCcCHHHHHHHHHHH
Confidence            3444  78999999999999999999864

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=96.38  E-value=0.0021  Score=47.82  Aligned_cols=23  Identities=26%  Similarity=0.301  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 036363           20 RTVVLVGHTGNGKSATGNSILGR   42 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~   42 (240)
                      ..+.|.|++|+|||+|+..|...
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~   77 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANE   77 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            68999999999999999998864

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=96.37  E-value=0.0023  Score=48.97  Aligned_cols=22  Identities=27%  Similarity=0.456  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 036363           20 RTVVLVGHTGNGKSATGNSILG   41 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g   41 (240)
                      ..|+|+|++||||||+.+.|..
T Consensus        17 ~~I~l~G~~GsGKsT~a~~La~   38 (233)
T 1ak2_A           17 VRAVLLGPPGAGKGTQAPKLAK   38 (233)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            6899999999999999999864

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=96.35  E-value=0.0016  Score=54.11  Aligned_cols=26  Identities=19%  Similarity=0.230  Sum_probs=22.0

Q ss_pred             cCCCCCceEEEEEcCCCCcHHHHHHHHh
Q 036363           13 TSPSNGVRTVVLVGHTGNGKSATGNSIL   40 (240)
Q Consensus        13 ~~~~~~~~~i~lvG~~g~GKSTlin~l~   40 (240)
                      -+++|  ..++|+|++|+|||||+..|+
T Consensus       174 GI~~G--ei~~I~G~sGsGKTTLl~~la  199 (400)
T 3lda_A          174 GVETG--SITELFGEFRTGKSQLCHTLA  199 (400)
T ss_dssp             SEETT--SEEEEEESTTSSHHHHHHHHH
T ss_pred             CcCCC--cEEEEEcCCCCChHHHHHHHH
Confidence            35566  899999999999999999664

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=96.33  E-value=0.011  Score=47.18  Aligned_cols=63  Identities=11%  Similarity=-0.030  Sum_probs=42.9

Q ss_pred             cEEEEEeCCCCCCCCCCCcC--CCceEEEEEEECCCCC-CHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           69 QVVNVIDTPGLFDFSAGSEF--DEIHAALVVFSVRSRF-SQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        69 ~~~~l~DtpG~~~~~~~~~~--~~~~~~l~v~~~~~~~-~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      ..+.+|||  +..+......  ..+|++++|+|++++. +.... .++..+..     ...|+++|+||+|...
T Consensus        63 ~~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~-----~~~piilv~NK~DL~~  129 (301)
T 1u0l_A           63 GSGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEK-----NELETVMVINKMDLYD  129 (301)
T ss_dssp             SSEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH-----TTCEEEEEECCGGGCC
T ss_pred             CeEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH-----CCCCEEEEEeHHHcCC
Confidence            37899999  5555444433  8999999999999664 55443 33333322     1367999999999554

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=96.33  E-value=0.0023  Score=48.39  Aligned_cols=22  Identities=27%  Similarity=0.519  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 036363           20 RTVVLVGHTGNGKSATGNSILG   41 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g   41 (240)
                      ..|+|+|++||||||+.+.|..
T Consensus         6 ~~I~l~G~~GsGKsT~a~~La~   27 (217)
T 3be4_A            6 HNLILIGAPGSGKGTQCEFIKK   27 (217)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            6899999999999999999853

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.33  E-value=0.0014  Score=53.20  Aligned_cols=23  Identities=26%  Similarity=0.456  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 036363           20 RTVVLVGHTGNGKSATGNSILGR   42 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~   42 (240)
                      ..++|+|++|+||||+++.|++.
T Consensus        37 ~~~ll~Gp~G~GKTtl~~~la~~   59 (354)
T 1sxj_E           37 PHLLLYGPNGTGKKTRCMALLES   59 (354)
T ss_dssp             CCEEEECSTTSSHHHHHHTHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            34999999999999999999883

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=96.31  E-value=0.0024  Score=47.65  Aligned_cols=21  Identities=24%  Similarity=0.433  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhC
Q 036363           21 TVVLVGHTGNGKSATGNSILG   41 (240)
Q Consensus        21 ~i~lvG~~g~GKSTlin~l~g   41 (240)
                      .|+|.|++||||||+.+.|..
T Consensus         4 ~i~i~G~~GsGKst~~~~la~   24 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAA   24 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            799999999999999999865

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=96.27  E-value=0.0026  Score=48.40  Aligned_cols=23  Identities=17%  Similarity=0.294  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 036363           20 RTVVLVGHTGNGKSATGNSILGR   42 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~   42 (240)
                      ..++|.|++|+|||||++.+...
T Consensus        53 ~~~ll~G~~G~GKT~la~~l~~~   75 (242)
T 3bos_A           53 QAIYLWGPVKSGRTHLIHAACAR   75 (242)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            78999999999999999998754

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=96.25  E-value=0.0036  Score=50.52  Aligned_cols=24  Identities=33%  Similarity=0.491  Sum_probs=21.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCC
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRR   43 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~   43 (240)
                      ..|+|+||+|+|||||...|+...
T Consensus        41 ~lIvI~GPTgsGKTtLa~~LA~~l   64 (339)
T 3a8t_A           41 KLLVLMGATGTGKSRLSIDLAAHF   64 (339)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTTS
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHC
Confidence            589999999999999999998754

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=96.25  E-value=0.0027  Score=51.33  Aligned_cols=23  Identities=26%  Similarity=0.420  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 036363           20 RTVVLVGHTGNGKSATGNSILGR   42 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~   42 (240)
                      ..|+|+|++|||||||...|...
T Consensus         8 ~lI~I~GptgSGKTtla~~La~~   30 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAKK   30 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCcCcHHHHHHHHHHH
Confidence            58999999999999999998754

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=96.24  E-value=0.0031  Score=50.35  Aligned_cols=23  Identities=35%  Similarity=0.476  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 036363           20 RTVVLVGHTGNGKSATGNSILGR   42 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~   42 (240)
                      ..|+|+||+|+|||||...|+..
T Consensus         4 ~~i~i~GptgsGKt~la~~La~~   26 (322)
T 3exa_A            4 KLVAIVGPTAVGKTKTSVMLAKR   26 (322)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHT
T ss_pred             cEEEEECCCcCCHHHHHHHHHHh
Confidence            57899999999999999999754

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=96.24  E-value=0.0029  Score=50.26  Aligned_cols=22  Identities=23%  Similarity=0.548  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 036363           20 RTVVLVGHTGNGKSATGNSILG   41 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g   41 (240)
                      ..|+++|++||||||+.+.|..
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999874

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=96.24  E-value=0.0036  Score=49.91  Aligned_cols=23  Identities=26%  Similarity=0.420  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 036363           20 RTVVLVGHTGNGKSATGNSILGR   42 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~   42 (240)
                      ..|+|+||+|+|||||...|+..
T Consensus        11 ~~i~i~GptgsGKt~la~~La~~   33 (316)
T 3foz_A           11 KAIFLMGPTASGKTALAIELRKI   33 (316)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHH
T ss_pred             cEEEEECCCccCHHHHHHHHHHh
Confidence            67899999999999999999754

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=96.24  E-value=0.0029  Score=50.80  Aligned_cols=23  Identities=22%  Similarity=0.391  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 036363           20 RTVVLVGHTGNGKSATGNSILGR   42 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~   42 (240)
                      ..|+|+|++|||||||...|+..
T Consensus         6 ~~i~i~GptGsGKTtla~~La~~   28 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALADA   28 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            58999999999999999998754

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=96.22  E-value=0.0032  Score=46.84  Aligned_cols=23  Identities=35%  Similarity=0.553  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 036363           20 RTVVLVGHTGNGKSATGNSILGR   42 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~   42 (240)
                      ..|+|+|++|+|||||...|...
T Consensus        35 ~~ilI~GpsGsGKStLA~~La~~   57 (205)
T 2qmh_A           35 LGVLITGDSGVGKSETALELVQR   57 (205)
T ss_dssp             EEEEEECCCTTTTHHHHHHHHTT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHh
Confidence            68999999999999999999864

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=96.16  E-value=0.0018  Score=55.05  Aligned_cols=23  Identities=30%  Similarity=0.670  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 036363           20 RTVVLVGHTGNGKSATGNSILGR   42 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~   42 (240)
                      .-|+|+|++|+|||+|+++|.+.
T Consensus        50 ~gvLL~GppGtGKT~Laraia~~   72 (476)
T 2ce7_A           50 KGILLVGPPGTGKTLLARAVAGE   72 (476)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            34899999999999999999874

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=96.15  E-value=0.0026  Score=46.28  Aligned_cols=23  Identities=26%  Similarity=0.440  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 036363           20 RTVVLVGHTGNGKSATGNSILGR   42 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~   42 (240)
                      ..++|.|++|+|||++++.+...
T Consensus        44 ~~vll~G~~G~GKT~la~~~~~~   66 (187)
T 2p65_A           44 NNPILLGDPGVGKTAIVEGLAIK   66 (187)
T ss_dssp             CEEEEESCGGGCHHHHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHHHHH
Confidence            67899999999999999998754

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=96.15  E-value=0.0047  Score=49.14  Aligned_cols=24  Identities=21%  Similarity=0.433  Sum_probs=21.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCC
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRR   43 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~   43 (240)
                      ..++|+|++|+|||++++.|.+..
T Consensus        48 ~~~ll~G~~GtGKt~la~~la~~~   71 (311)
T 4fcw_A           48 GSFLFLGPTGVGKTELAKTLAATL   71 (311)
T ss_dssp             EEEEEESCSSSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHHHH
Confidence            589999999999999999998653

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=96.14  E-value=0.0026  Score=48.55  Aligned_cols=23  Identities=22%  Similarity=0.339  Sum_probs=17.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 036363           20 RTVVLVGHTGNGKSATGNSILGR   42 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~   42 (240)
                      ..|+|.|++||||||+++.|...
T Consensus        26 ~~I~~eG~~GsGKsT~~~~l~~~   48 (227)
T 3v9p_A           26 KFITFEGIDGAGKTTHLQWFCDR   48 (227)
T ss_dssp             CEEEEECCC---CHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            89999999999999999998754

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=96.10  E-value=0.0038  Score=51.61  Aligned_cols=22  Identities=32%  Similarity=0.519  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 036363           20 RTVVLVGHTGNGKSATGNSILG   41 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g   41 (240)
                      ..|+|+||+|+|||||...|+.
T Consensus         3 ~~i~i~GptgsGKttla~~La~   24 (409)
T 3eph_A            3 KVIVIAGTTGVGKSQLSIQLAQ   24 (409)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHH
T ss_pred             cEEEEECcchhhHHHHHHHHHH
Confidence            6789999999999999999874

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=96.09  E-value=0.0035  Score=49.63  Aligned_cols=23  Identities=26%  Similarity=0.540  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 036363           20 RTVVLVGHTGNGKSATGNSILGR   42 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~   42 (240)
                      ..++|.|++|+||||+++.+.+.
T Consensus        55 ~~vll~Gp~GtGKT~la~~la~~   77 (297)
T 3b9p_A           55 KGLLLFGPPGNGKTLLARAVATE   77 (297)
T ss_dssp             SEEEEESSSSSCHHHHHHHHHHH
T ss_pred             CeEEEECcCCCCHHHHHHHHHHH
Confidence            68999999999999999999864

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=96.04  E-value=0.002  Score=51.15  Aligned_cols=22  Identities=18%  Similarity=0.360  Sum_probs=17.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 036363           20 RTVVLVGHTGNGKSATGNSILG   41 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g   41 (240)
                      ..|+|.|++||||||+.+.|..
T Consensus         6 ~iIgItG~sGSGKSTva~~L~~   27 (290)
T 1a7j_A            6 PIISVTGSSGAGTSTVKHTFDQ   27 (290)
T ss_dssp             CEEEEESCC---CCTHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            6899999999999999998864

>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*

Probab=96.02  E-value=0.0019  Score=55.17  Aligned_cols=30  Identities=20%  Similarity=0.263  Sum_probs=24.8

Q ss_pred             ccccCCCCCceEEEEEcCCCCcHHHHHHHHhC
Q 036363           10 CELTSPSNGVRTVVLVGHTGNGKSATGNSILG   41 (240)
Q Consensus        10 ~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g   41 (240)
                      +.+.+..+  ..++++|.||+||||++|+|+.
T Consensus       160 v~ldL~~~--pHlLIaG~TGSGKSt~L~~li~  189 (512)
T 2ius_A          160 VVADLAKM--PHLLVAGTTGSGASVGVNAMIL  189 (512)
T ss_dssp             EEEEGGGS--CSEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEcccC--ceEEEECCCCCCHHHHHHHHHH
Confidence            45555555  7899999999999999999864

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=96.00  E-value=0.0043  Score=48.74  Aligned_cols=23  Identities=22%  Similarity=0.501  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 036363           20 RTVVLVGHTGNGKSATGNSILGR   42 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~   42 (240)
                      ..+.|.|++|+|||+|+++++..
T Consensus        52 ~~~ll~G~~GtGKT~la~~la~~   74 (285)
T 3h4m_A           52 KGILLYGPPGTGKTLLAKAVATE   74 (285)
T ss_dssp             SEEEEESSSSSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            67999999999999999999764

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=95.98  E-value=0.004  Score=46.57  Aligned_cols=23  Identities=30%  Similarity=0.398  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 036363           20 RTVVLVGHTGNGKSATGNSILGR   42 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~   42 (240)
                      ..+++.||+|+||||++.+|+..
T Consensus        59 n~ili~GPPGtGKTt~a~ala~~   81 (212)
T 1tue_A           59 NCLVFCGPANTGKSYFGMSFIHF   81 (212)
T ss_dssp             SEEEEESCGGGCHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            57999999999999999888753

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.97  E-value=0.0025  Score=51.68  Aligned_cols=23  Identities=22%  Similarity=0.365  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 036363           20 RTVVLVGHTGNGKSATGNSILGR   42 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~   42 (240)
                      ..++|.|++|+||||+++.+.+.
T Consensus        59 ~~~ll~G~~G~GKT~la~~la~~   81 (353)
T 1sxj_D           59 PHMLFYGPPGTGKTSTILALTKE   81 (353)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            34999999999999999999865

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=95.92  E-value=0.0026  Score=57.64  Aligned_cols=31  Identities=29%  Similarity=0.413  Sum_probs=28.6

Q ss_pred             CccCCccccCCCCCceEEEEEcCCCCcHHHHHH
Q 036363            5 RIDDDCELTSPSNGVRTVVLVGHTGNGKSATGN   37 (240)
Q Consensus         5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin   37 (240)
                      +-++|+++.+|.+  .-++|.|.+|||||||+.
T Consensus        24 hNLkni~v~iP~~--~l~viTGvSGSGKSSLaf   54 (842)
T 2vf7_A           24 HNLKDISVKVPRD--ALVVFTGVSGSGKSSLAF   54 (842)
T ss_dssp             TTCCSEEEEEESS--SEEEEESSTTSSHHHHHT
T ss_pred             cCCCCeeEEecCC--CEEEEECCCCCCHHHHHH
Confidence            5678999999999  999999999999999984

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=95.89  E-value=0.0062  Score=47.10  Aligned_cols=23  Identities=22%  Similarity=0.466  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 036363           20 RTVVLVGHTGNGKSATGNSILGR   42 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~   42 (240)
                      ..|.|.|++|+|||++++.+...
T Consensus        40 ~~vll~G~~GtGKT~la~~la~~   62 (262)
T 2qz4_A           40 KGALLLGPPGCGKTLLAKAVATE   62 (262)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            67999999999999999999753

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=95.85  E-value=0.0043  Score=50.60  Aligned_cols=27  Identities=22%  Similarity=0.423  Sum_probs=23.0

Q ss_pred             CCCCCceEEEEEcCCCCcHHHHHHHHhCC
Q 036363           14 SPSNGVRTVVLVGHTGNGKSATGNSILGR   42 (240)
Q Consensus        14 ~~~~~~~~i~lvG~~g~GKSTlin~l~g~   42 (240)
                      +++|  ..+.|+|++|+|||||+..++..
T Consensus        58 i~~G--~i~~I~GppGsGKSTLal~la~~   84 (356)
T 3hr8_A           58 YPRG--RIVEIFGQESSGKTTLALHAIAE   84 (356)
T ss_dssp             EETT--EEEEEEESTTSSHHHHHHHHHHH
T ss_pred             ccCC--cEEEEECCCCCCHHHHHHHHHHH
Confidence            3456  79999999999999999998754

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=95.83  E-value=0.0054  Score=48.65  Aligned_cols=23  Identities=22%  Similarity=0.317  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 036363           20 RTVVLVGHTGNGKSATGNSILGR   42 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~   42 (240)
                      ..+.|.||+|+|||+|.++|+..
T Consensus        37 ~~lLl~GppGtGKT~la~aiA~~   59 (293)
T 3t15_A           37 LILGIWGGKGQGKSFQCELVFRK   59 (293)
T ss_dssp             SEEEEEECTTSCHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            67888899999999999999754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	240
d1h65a_	257	c.37.1.8 (A:) Chloroplast protein translocon GTPas	7e-19
d1tq4a_	400	c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (	1e-09
d1x3sa1	177	c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta	2e-04
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	4e-04
d2bmea1	174	c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta	7e-04
d2cxxa1	184	c.37.1.8 (A:2-185) GTP-binding protein engB {Pyroc	0.001
d1lnza2	185	c.37.1.8 (A:158-342) Obg GTP-binding protein middl	0.001
d1udxa2	180	c.37.1.8 (A:157-336) Obg GTP-binding protein middl	0.002
d1mkya2	186	c.37.1.8 (A:173-358) Probable GTPase Der, N-termin	0.002
d1xzpa2	160	c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotog	0.002
d1puja_	273	c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subti	0.002
d3raba_	169	c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI	0.002

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 257

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 80.6 bits (198), Expect = 7e-19
 Identities = 30/162 (18%), Positives = 60/162 (37%), Gaps = 15/162 (9%)

Query: 21  TVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLF 80
           T++++G  G GKS+T NSI+G R        S       + R+    G  +N+IDTPGL 
Sbjct: 34  TILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSR--AGFTLNIIDTPGLI 91

Query: 81  DFSAGSE------------FDEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMI 128
           +    ++                    V      R    ++    ++   FGK  ++  I
Sbjct: 92  EGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAI 151

Query: 129 VVFSGRDELEANDETLEDYLGRECPKPLKEILHLFDNRCVLF 170
           V  +       +    +++   +  + L +++    +     
Sbjct: 152 VALTHAQFSPPDGLPYDEFF-SKRSEALLQVVRSGASLKKDA 192

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Length = 400

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.2 bits (132), Expect = 1e-09
 Identities = 30/155 (19%), Positives = 54/155 (34%), Gaps = 12/155 (7%)

Query: 11  ELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTC-EMHRTVLKDGQ 69
            L    + V  V + G TG+GKS+  N++ G    +  A+ +GV     E H     +  
Sbjct: 48  ALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIP 107

Query: 70  VVNVIDTPGLFDFSAG-----SEFDEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCF 124
            V   D PG+   +        +         +    +RF + +     ++     K   
Sbjct: 108 NVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISM-MKKEF- 165

Query: 125 DYMIVVFSGRDELEANDETLEDYLGRECPKPLKEI 159
                V +  D    N+   E     +  K L++I
Sbjct: 166 ---YFVRTKVDSDITNEADGEPQT-FDKEKVLQDI 196

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (90), Expect = 2e-04
 Identities = 15/112 (13%), Positives = 39/112 (34%), Gaps = 3/112 (2%)

Query: 22  VVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFD 81
           ++++G +G GKS+          F    +++          +V  +   + + DT G   
Sbjct: 10  ILIIGESGVGKSSLLLRFTDDT-FDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER 68

Query: 82  FSAGSE--FDEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVF 131
           F   +   +      ++V+ V  R +  +     +    +        ++V 
Sbjct: 69  FRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVG 120

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.4 bits (86), Expect = 4e-04
 Identities = 20/115 (17%), Positives = 48/115 (41%), Gaps = 11/115 (9%)

Query: 22  VVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMH-RTVLKDGQVV--NVIDTPG 78
           ++L+G +G GK+     +L R +  +  S+   T   +   RT+  DG+ +   + DT G
Sbjct: 9   LLLIGDSGVGKT----CVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAG 64

Query: 79  LFDFSA--GSEFDEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVF 131
              F     + +      ++V+ + +  S +     + ++ +      D   ++ 
Sbjct: 65  QERFRTITTAYYRGAMGIMLVYDITNEKSFDN--IRNWIRNIEEHASADVEKMIL 117

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (84), Expect = 7e-04
 Identities = 17/110 (15%), Positives = 41/110 (37%), Gaps = 3/110 (2%)

Query: 22  VVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFD 81
            +++G+ G GKS   +  + ++ FK  ++ +           V      + + DT G   
Sbjct: 8   FLVIGNAGTGKSCLLHQFIEKK-FKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQER 66

Query: 82  FSAGSE--FDEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIV 129
           F + +   +     AL+V+ + SR +        +   +        ++ 
Sbjct: 67  FRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILC 116

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 36.6 bits (83), Expect = 0.001
 Identities = 28/212 (13%), Positives = 61/212 (28%), Gaps = 32/212 (15%)

Query: 21  TVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLF 80
           T++  G +  GKS     + G++  + +    GVT             +   +ID PG  
Sbjct: 2   TIIFAGRSNVGKSTLIYRLTGKKVRRGKR--PGVTRKIIEIEW-----KNHKIIDMPGFG 54

Query: 81  DFSAGSEFDEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEAN 140
                 +  +                                  D  ++V  G+   E  
Sbjct: 55  FMMGLPKEVQER----------------IKDEIVHFIEDNAKNIDVAVLVVDGKAAPEII 98

Query: 141 DETLEDYLGRECPKPLKEILHLFDNRCVLFDNKTKDAAKRTEQIGKLRSLQLAREHAARL 200
               +        +  + +  L  +   +      D  K  +++    + +     +   
Sbjct: 99  KRWEKRGEIPIDVEFYQFLREL--DIPTIVAVNKLDKIKNVQEVINFLAEKFEVPLSEID 156

Query: 201 K--VEVTAKSTQMKSDDKIHKLREDLERAQRE 230
           K  + ++A     K  D I +L+  +    RE
Sbjct: 157 KVFIPISA-----KFGDNIERLKNRIFEVIRE 183

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

 Score = 36.1 bits (82), Expect = 0.001
 Identities = 15/61 (24%), Positives = 22/61 (36%), Gaps = 2/61 (3%)

Query: 21 TVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLF 80
           V LVG    GKS   + +   +     A     T    +      DG+   + D PGL 
Sbjct: 3  DVGLVGFPSVGKSTLLSVVSSAKP--KIADYHFTTLVPNLGMVETDDGRSFVMADLPGLI 60

Query: 81 D 81
          +
Sbjct: 61 E 61

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} Length = 180

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

 Score = 36.2 bits (82), Expect = 0.002
 Identities = 12/60 (20%), Positives = 24/60 (40%), Gaps = 2/60 (3%)

Query: 22 VVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFD 81
          V LVG+   GKS+   ++         A     T +  +    + + +   + D PG+ +
Sbjct: 4  VGLVGYPNAGKSSLLAAMTRAHP--KIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIE 61

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

 Score = 36.2 bits (82), Expect = 0.002
 Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 3/63 (4%)

Query: 16 SNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVID 75
          ++ ++ V +VG    GKS   N+IL +   ++  S    T+   +   V  DG+    +D
Sbjct: 6  TDAIK-VAIVGRPNVGKSTLFNAILNKE--RALVSPIPGTTRDPVDDEVFIDGRKYVFVD 62

Query: 76 TPG 78
          T G
Sbjct: 63 TAG 65

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 35.7 bits (81), Expect = 0.002
 Identities = 16/75 (21%), Positives = 31/75 (41%), Gaps = 3/75 (4%)

Query: 22 VVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFD 81
          +V+VG    GKS   N +L     ++  +    T+   +   ++  G +  ++DT G+  
Sbjct: 3  MVIVGKPNVGKSTLLNRLLNED--RAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRS 60

Query: 82 FSAGS-EFDEIHAAL 95
           +    E   I   L
Sbjct: 61 ETNDLVERLGIERTL 75

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} Length = 273

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

 Score = 36.3 bits (83), Expect = 0.002
 Identities = 20/135 (14%), Positives = 45/135 (33%), Gaps = 11/135 (8%)

Query: 14  SPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNV 73
                    +++G    GKS   N +  +   K+     G        +  +K G+ + +
Sbjct: 107 GVKPRAIRALIIGIPNVGKSTLINRLAKKNIAKT-----GDRPGITTSQQWVKVGKELEL 161

Query: 74  IDTPGLFDFSAGSEFDEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSG 133
           +DTPG+       E   +  A+   +++      ++  +  L+ L               
Sbjct: 162 LDTPGILWPKFEDELVGLRLAV-TGAIKDSIINLQDVAVFGLRFLEEHYPERLKE----- 215

Query: 134 RDELEANDETLEDYL 148
           R  L+   E + +  
Sbjct: 216 RYGLDEIPEDIAELF 230

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.2 bits (80), Expect = 0.002
 Identities = 11/110 (10%), Positives = 40/110 (36%), Gaps = 3/110 (2%)

Query: 22  VVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFD 81
           ++++G++  GK++            +  S+ G+    +      K  + + + DT G   
Sbjct: 8   ILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIK-LQIWDTAGQER 66

Query: 82  FSA--GSEFDEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIV 129
           +     + +      ++++ + +  S        +    +  +    ++V
Sbjct: 67  YRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLV 116

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	240
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	99.89
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.79
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.74
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.7
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.69
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.69
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.68
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.67
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	99.67
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.67
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	99.67
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	99.66
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.65
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.65
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.64
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.64
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	99.64
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	99.64
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	99.63
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	99.63
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	99.63
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	99.63
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	99.63
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	99.62
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.62
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.62
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	99.62
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	99.62
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.62
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	99.61
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	99.61
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	99.61
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	99.61
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	99.6
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	99.6
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	99.6
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	99.6
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	99.59
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	99.59
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	99.58
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	99.58
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	99.58
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	99.57
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.57
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	99.57
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.57
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	99.57
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	99.57
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	99.55
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	99.55
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	99.54
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.54
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	99.54
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	99.54
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.53
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.53
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	99.53
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	99.52
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	99.52
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	99.52
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	99.52
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	99.49
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	99.49
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.48
d1nrjb_	209	Signal recognition particle receptor beta-subunit	99.48
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	99.48
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.45
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.45
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.44
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	99.44
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.43
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.42
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	99.42
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	99.41
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.38
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	99.37
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	99.37
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	99.35
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	99.34
d2awna2	232	Maltose transport protein MalK, N-terminal domain	99.3
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.29
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	99.27
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	99.27
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.25
d1g2912	240	Maltose transport protein MalK, N-terminal domain	99.24
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	99.2
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	99.19
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	99.18
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.17
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	99.17
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	99.14
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	99.14
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	99.13
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.12
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	99.08
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	99.07
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	99.05
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	99.04
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	99.01
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	98.98
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	98.96
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.94
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	98.94
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	98.93
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	98.92
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.88
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	98.81
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	98.8
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	98.76
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.75
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	98.67
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	98.64
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	98.64
d1j8yf2	211	GTPase domain of the signal sequence recognition p	98.43
d1vmaa2	213	GTPase domain of the signal recognition particle r	98.43
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.39
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	98.34
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	98.29
d2qy9a2	211	GTPase domain of the signal recognition particle r	98.26
d1okkd2	207	GTPase domain of the signal recognition particle r	98.22
d1ls1a2	207	GTPase domain of the signal sequence recognition p	98.18
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.8
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.72
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.58
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	97.54
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.54
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	97.52
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.5
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.5
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.48
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.47
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.47
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.42
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.42
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.38
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.37
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	97.34
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.33
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.32
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.31
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	97.3
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	97.29
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	97.28
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.27
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.25
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.24
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	97.24
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	97.23
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	97.23
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	97.22
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	97.21
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.21
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	97.18
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	97.18
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	97.17
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	97.17
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.11
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	97.1
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	97.09
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	97.08
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	97.03
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	97.03
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	97.03
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	97.01
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	97.01
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	97.0
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	96.98
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	96.85
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	96.84
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	96.83
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	96.83
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	96.8
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	96.77
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	96.73
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	96.69
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	96.66
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	96.64
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	96.59
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	96.57
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	96.55
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	96.51
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	96.51
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	96.47
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	96.45
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	96.41
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	96.35
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	96.34
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	96.31
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	96.31
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	96.3
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	96.3
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	96.23
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	96.22
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.15
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	96.15
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	96.12
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	96.12
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	96.1
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	96.09
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	96.08
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	96.06
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	96.04
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	96.02
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	96.02
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.02
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	95.99
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	95.99
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	95.92
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	95.92
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	95.88
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	95.85
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	95.83
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	95.78
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	95.76
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	95.72
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	95.61
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	95.59
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	95.54
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	95.51
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	95.4
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	95.34
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	95.24
d1xpua3	289	Transcription termination factor Rho, ATPase domai	95.2
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	95.06
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	94.99
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	94.98
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	94.81
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	94.63
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	94.62
d1tuea_	205	Replication protein E1 helicase domain {Human papi	94.6
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	94.58
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	94.41
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	94.35
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	94.25
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	94.05
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	94.03
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	93.93
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	93.84
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	93.8
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	93.5
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	93.39
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	93.14
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	92.79
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	92.65
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	91.74
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	91.73
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	91.68
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	91.59
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	91.54
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	90.78
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	90.57
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	90.4
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	90.21
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	89.9
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	89.83
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	89.75
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	89.42
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	88.98
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	88.29
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	88.11
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	88.08
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	88.04
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	87.51
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	87.3
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	87.05
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	86.59
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	85.9
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	85.33
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	85.24
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	82.84
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	81.16
d1gkub1	237	Helicase-like "domain" of reverse gyrase {Archaeon	80.16

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.89  E-value=3.8e-23  Score=161.18  Aligned_cols=145  Identities=21%  Similarity=0.309  Sum_probs=118.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC---------
Q 036363           18 GVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF---------   88 (240)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~---------   88 (240)
                      ...+|+|+|.+|+|||||+|+|+|...+..+. ..++|..+......+ .+..+.++||||+.+.......         
T Consensus        31 ~~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~-~~~~T~~~~~~~~~~-~g~~i~viDTPGl~~~~~~~~~~~~~i~~~~  108 (257)
T d1h65a_          31 NSLTILVMGKGGVGKSSTVNSIIGERVVSISP-FQSEGPRPVMVSRSR-AGFTLNIIDTPGLIEGGYINDMALNIIKSFL  108 (257)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCS-SSCCCSSCEEEEEEE-TTEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred             CCcEEEEECCCCCcHHHHHHHHhCCCceeecC-CCCcceeEEEEEEEe-ccEEEEEEeeecccCCcchHHHHHHHHHHHH
Confidence            34899999999999999999999998776654 356777777777777 8899999999999876433222         


Q ss_pred             --CCceEEEEEEECC-CCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCCcccHHHHhcccCCchHHHHHHHhCC
Q 036363           89 --DEIHAALVVFSVR-SRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEANDETLEDYLGRECPKPLKEILHLFDN  165 (240)
Q Consensus        89 --~~~~~~l~v~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (240)
                        ..+|+++||++++ .+++..+...++.+.+.||...++++++|+||+|.+.+....+++|+.. ....+..++..|..
T Consensus       109 ~~~~~~~il~v~~~~~~r~~~~~~~~l~~l~~~fg~~~~~~~ivv~t~~D~~~~~~~~~e~~~~~-~~~~l~~~i~~~~~  187 (257)
T d1h65a_         109 LDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYDEFFSK-RSEALLQVVRSGAS  187 (257)
T ss_dssp             TTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCCHHHHHHH-HHHHHHHHHHHHTT
T ss_pred             hcCCCCeEEEEEECCCCCCCHHHHHHHHHHHHHcchhhhhCEEEEEECcccCCcCCCcHHHHHHh-hhHHHHHHHHHHhh
Confidence              7889999999886 4799999999999999999998999999999999888766788888766 34455666666543

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.79  E-value=7.1e-19  Score=129.47  Aligned_cols=115  Identities=22%  Similarity=0.217  Sum_probs=86.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC----------C
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF----------D   89 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~----------~   89 (240)
                      ..|+|+|++|+|||||+|+|+|......+. ..++|.......... .+..+.++||||+.........          .
T Consensus         6 ~~I~lvG~~~~GKSSLin~l~~~~~~~~~~-~~~tt~~~~~~~~~~-~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~   83 (178)
T d1wf3a1           6 GFVAIVGKPNVGKSTLLNNLLGVKVAPISP-RPQTTRKRLRGILTE-GRRQIVFVDTPGLHKPMDALGEFMDQEVYEALA   83 (178)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSCCSCCCS-SSCCCCSCEEEEEEE-TTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTS
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCceeecc-cCCcccccccceeee-eeeeeeecccccccccccccchhcccccccccc
Confidence            479999999999999999999986433222 244555555555555 7889999999999876544332          6


Q ss_pred             CceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363           90 EIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        90 ~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~  139 (240)
                      .+|++++|+|++.+.+..+..++..+....+   ..|+++|+||+|....
T Consensus        84 ~ad~il~v~D~~~~~~~~~~~i~~~l~~~~~---~~piilv~NK~Dl~~~  130 (178)
T d1wf3a1          84 DVNAVVWVVDLRHPPTPEDELVARALKPLVG---KVPILLVGNKLDAAKY  130 (178)
T ss_dssp             SCSEEEEEEETTSCCCHHHHHHHHHHGGGTT---TSCEEEEEECGGGCSS
T ss_pred             cccceeeeechhhhhcccccchhhheecccc---chhhhhhhcccccccC
Confidence            7999999999998888887766666654332   2579999999996543

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.74  E-value=2.5e-18  Score=129.00  Aligned_cols=117  Identities=15%  Similarity=0.197  Sum_probs=89.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccc--cC-------------CCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCC
Q 036363           18 GVRTVVLVGHTGNGKSATGNSILGRRAFKS--RA-------------SSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDF   82 (240)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~--~~-------------~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~   82 (240)
                      +..+|+++|+.++|||||+++|++......  +.             ...+.|.......+.| ++..++++||||+.+|
T Consensus         2 ~~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~-~~~~i~iiDtPGh~df   80 (204)
T d2c78a3           2 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYET-AKRHYSHVDCPGHADY   80 (204)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEEC-SSCEEEEEECCCSGGG
T ss_pred             CCeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEe-CCeEEEEEeCCCchhh
Confidence            347999999999999999999973211000  00             0126677777777888 8999999999999988


Q ss_pred             CCCCcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363           83 SAGSEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        83 ~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~  139 (240)
                      ......  ..+|++|+|+++..+...+..+.|..+...    ..+++++++||+|.+..
T Consensus        81 ~~~~~~~~~~aD~avlVvda~~Gv~~qt~~~~~~~~~~----gi~~iiv~iNK~D~~~~  135 (204)
T d2c78a3          81 IKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQV----GVPYIVVFMNKVDMVDD  135 (204)
T ss_dssp             HHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHT----TCCCEEEEEECGGGCCC
T ss_pred             HHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHc----CCCeEEEEEEecccCCC
Confidence            755433  889999999999999999998888888643    23568888999997653

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.70  E-value=1.4e-16  Score=117.71  Aligned_cols=114  Identities=20%  Similarity=0.227  Sum_probs=79.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC-----------
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF-----------   88 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~-----------   88 (240)
                      .+|+++|++|+|||||+|+|+|......+.. .+++..+......+ ++..+.++||||+.........           
T Consensus         9 ~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~-~~t~~~~~~~~~~~-~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~   86 (186)
T d1mkya2           9 IKVAIVGRPNVGKSTLFNAILNKERALVSPI-PGTTRDPVDDEVFI-DGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVV   86 (186)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSTTEEECCC-C------CCEEEEE-TTEEEEESSCSCC-----------CCSCCHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCcceeecc-cccccccceeeecc-CCceeeeeccCCccccccccccccccchhHHHH
Confidence            8999999999999999999999765433332 34444444445556 8889999999998654432222           


Q ss_pred             ---CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCC
Q 036363           89 ---DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEAN  140 (240)
Q Consensus        89 ---~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~  140 (240)
                         ..+|++++|+++..+........+..+...     ..|+++|+||+|.....
T Consensus        87 ~~~~~~dvii~v~d~~~~~~~~~~~~~~~~~~~-----~~~~i~v~nK~D~~~~~  136 (186)
T d1mkya2          87 DSIEKADVVVIVLDATQGITRQDQRMAGLMERR-----GRASVVVFNKWDLVVHR  136 (186)
T ss_dssp             HHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHT-----TCEEEEEEECGGGSTTG
T ss_pred             HHHhcCCEEEEeecccccchhhHHHHHHHHHHc-----CCceeeeccchhhhcch
Confidence               778999999999978888877776666532     26799999999977554

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.69  E-value=3.6e-17  Score=124.78  Aligned_cols=112  Identities=20%  Similarity=0.256  Sum_probs=80.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEE------------------EEEeCCcEEEEEeCCCCCC
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHR------------------TVLKDGQVVNVIDTPGLFD   81 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~------------------~~~~~~~~~~l~DtpG~~~   81 (240)
                      ..|+++|++++|||||+|+|++........  .+.+.......                  ..+ ++..+.++||||+.+
T Consensus         6 p~IaIiGh~d~GKSTL~~~L~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~iDtPGh~~   82 (227)
T d1g7sa4           6 PIVSVLGHVDHGKTTLLDHIRGSAVASREA--GGITQHIGATEIPMDVIEGICGDFLKKFSIRE-TLPGLFFIDTPGHEA   82 (227)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHSCC------CCCBTTEEEEEHHHHHHHSCGGGGGCGGGG-TCCEEEEECCCTTSC
T ss_pred             CEEEEEeCCCccHHHHHHHHHhhcchheec--Cceeeeccccccccccccccccccccceeecc-cccccccccccceec
Confidence            459999999999999999998753221110  11111100111                  112 456789999999998


Q ss_pred             CCCCCcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363           82 FSAGSEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        82 ~~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~  139 (240)
                      +......  ..+|++++|+|+..++...+...+..+...     ..|+++++||+|....
T Consensus        83 f~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~-----~~p~iivlNK~D~~~~  137 (227)
T d1g7sa4          83 FTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMY-----RTPFVVAANKIDRIHG  137 (227)
T ss_dssp             CTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHT-----TCCEEEEEECGGGSTT
T ss_pred             ccccchhcccccceEEEEEecccCcccchhHHHHHhhcC-----CCeEEEEEECccCCCc
Confidence            8766554  889999999999999999999998888642     2579999999997644

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.69  E-value=1.6e-16  Score=116.84  Aligned_cols=117  Identities=15%  Similarity=0.084  Sum_probs=75.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC---------CCc
Q 036363           21 TVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF---------DEI   91 (240)
Q Consensus        21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~---------~~~   91 (240)
                      .|+|+|.+|||||||+|+|+|........  .+.|....+.......+..+.+|||||+.........         ...
T Consensus         3 ~VaivG~~nvGKSTLin~L~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~   80 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMTRAHPKIAPY--PFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIART   80 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEECCC--TTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCceecc--CCCceeeeeceeeecCCCeEEEcCCCeeecCchHHHHHHHHHHHHHHhh
Confidence            49999999999999999999986543332  3344444444344435678999999998765433222         788


Q ss_pred             eEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363           92 HAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        92 ~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~  139 (240)
                      ++++++++...............+..........|+++|+||+|.+.+
T Consensus        81 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~~  128 (180)
T d1udxa2          81 RVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE  128 (180)
T ss_dssp             SEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH
T ss_pred             hhhhhhcccccccccchhhhhhhhhccccccchhhhhhhhhhhhhhhH
Confidence            999999998733222222222232221111223579999999997654

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.68  E-value=4.3e-16  Score=115.97  Aligned_cols=125  Identities=20%  Similarity=0.281  Sum_probs=81.5

Q ss_pred             CCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC------
Q 036363           15 PSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF------   88 (240)
Q Consensus        15 ~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~------   88 (240)
                      |.+...+|+|+|++|||||||+|+|+|...........+.|......  .  ....+.++|++|..........      
T Consensus        19 p~~~~~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~~~--~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~   94 (195)
T d1svia_          19 PEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFY--I--INDELHFVDVPGYGFAKVSKSEREAWGR   94 (195)
T ss_dssp             CCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEE--E--ETTTEEEEECCCBCCCSSCHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHhcCCCceEEeecccceeeecccc--c--ccccceEEEEEeeccccccccccchhhh
Confidence            34445689999999999999999999975422222222333332221  1  2345678899887665444322      


Q ss_pred             ---------CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCCcccHHHHhcc
Q 036363           89 ---------DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEANDETLEDYLGR  150 (240)
Q Consensus        89 ---------~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~~~~~~~~~~~  150 (240)
                               ...+++++|+|+..++...+...+..+...     ..|+++|+||+|.+.+.  .+++++..
T Consensus        95 ~~~~~~~~~~~~~~vi~viD~~~~~~~~~~~~~~~l~~~-----~~piivv~NK~D~~~~~--~~~~~~~~  158 (195)
T d1svia_          95 MIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYY-----GIPVIVIATKADKIPKG--KWDKHAKV  158 (195)
T ss_dssp             HHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT-----TCCEEEEEECGGGSCGG--GHHHHHHH
T ss_pred             HHhhhhccccchhhhhhhhhccccccccccccccccccc-----cCcceechhhccccCHH--HHHHHHHH
Confidence                     677999999999988988888888887642     25699999999977553  55554443

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.67  E-value=1.6e-16  Score=114.60  Aligned_cols=115  Identities=22%  Similarity=0.211  Sum_probs=84.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC----------C
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF----------D   89 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~----------~   89 (240)
                      .+|+++|++|||||||+|+|+|........ ..+.+.........+ .+..+.++||||+.+.......          .
T Consensus         2 ~kI~lvG~~nvGKSsLin~l~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~   79 (161)
T d2gj8a1           2 MKVVIAGRPNAGKSSLLNALAGREAAIVTD-IAGTTRDVLREHIHI-DGMPLHIIDTAGLREASDEVERIGIERAWQEIE   79 (161)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSCCSCCCS-STTCCCSCEEEEEEE-TTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceEeec-ccccccceEeeeeec-cCceeeeccccccccccccchhHHHHHHHHHHH
Confidence            789999999999999999999986543322 234444444445555 7889999999999876543322          7


Q ss_pred             CceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           90 EIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        90 ~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      .+|+++++++............+..+......  ..|+++|+||+|...
T Consensus        80 ~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~iilv~NK~Dl~~  126 (161)
T d2gj8a1          80 QADRVLFMVDGTTTDAVDPAEIWPEFIARLPA--KLPITVVRNKADITG  126 (161)
T ss_dssp             TCSEEEEEEETTTCCCCSHHHHCHHHHHHSCT--TCCEEEEEECHHHHC
T ss_pred             hccccceeeccccccchhhhhhhhhhhhhccc--ccceeeccchhhhhh
Confidence            88999999999877666666666655554433  367999999999544

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.67  E-value=1.3e-16  Score=123.89  Aligned_cols=150  Identities=19%  Similarity=0.264  Sum_probs=107.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhC---CCCccc-------------cCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCC
Q 036363           18 GVRTVVLVGHTGNGKSATGNSILG---RRAFKS-------------RASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFD   81 (240)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlin~l~g---~~~~~~-------------~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~   81 (240)
                      ..++|+++|+.|+|||||+.+|+-   .....+             .....+.|.......+.| ++..++++||||+.+
T Consensus         5 ~iRni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~-~~~~~n~iDtPG~~d   83 (276)
T d2bv3a2           5 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFW-KDHRINIIDAPGHVD   83 (276)
T ss_dssp             GEEEEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEE-TTEEEEEECCCSSSS
T ss_pred             hceEEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeecc-CCeEEEEecCCchhh
Confidence            347899999999999999999862   211000             111235566667778888 999999999999999


Q ss_pred             CCCCCcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCCcccHHHHhcccC-------
Q 036363           82 FSAGSEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEANDETLEDYLGREC-------  152 (240)
Q Consensus        82 ~~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~~~~~~~~~~~~~-------  152 (240)
                      |......  ..+|++++|+++..+...+....|+.+.+.     ..|.++++||+|....+...+-+-+....       
T Consensus        84 F~~e~~~~l~~~D~avlVvda~~Gv~~~T~~~w~~a~~~-----~lP~i~fINKmDr~~ad~~~~l~ei~~~l~~~~vp~  158 (276)
T d2bv3a2          84 FTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKY-----KVPRIAFANKMDKTGADLWLVIRTMQERLGARPVVM  158 (276)
T ss_dssp             CSTTHHHHHHHCCEEEEEEETTTSSCHHHHHHHHHHHTT-----TCCEEEEEECTTSTTCCHHHHHHHHHHTTCCCEEEC
T ss_pred             hHHHHHHHHHhhhheEEeccccCCcchhHHHHHHHHHHc-----CCCEEEEEecccccccccchhHHHHHHHhCCCeEEE
Confidence            9888776  899999999999999999999999988632     35689999999976654222212111111       


Q ss_pred             ------CchHHHHHHHhCCcEEEEeCC
Q 036363          153 ------PKPLKEILHLFDNRCVLFDNK  173 (240)
Q Consensus       153 ------~~~~~~~~~~~~~~~~~~~~~  173 (240)
                            ...+.++++....+.+.|.+.
T Consensus       159 ~~Pig~~~~f~GvvDl~~~~a~~~~~~  185 (276)
T d2bv3a2         159 QLPIGREDTFSGIIDVLRMKAYTYGND  185 (276)
T ss_dssp             EEEESCGGGCCEEEETTTTEEEEESSS
T ss_pred             EecccCCCceeEEeeccceEEEEecCC
Confidence                  134456666667777777643

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=99.67  E-value=1.1e-15  Score=110.58  Aligned_cols=112  Identities=13%  Similarity=0.096  Sum_probs=79.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEEEEE
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAALVV   97 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~v   97 (240)
                      .+|+++|++|+|||||+++|.+.... .    .+.|.......... ++..+.+|||||...+......  ..++++++|
T Consensus         3 ~ki~ivG~~~~GKTsLi~~l~~~~~~-~----~~~t~~~~~~~~~~-~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   76 (165)
T d1ksha_           3 LRLLMLGLDNAGKTTILKKFNGEDVD-T----ISPTLGFNIKTLEH-RGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWV   76 (165)
T ss_dssp             EEEEEECSTTSSHHHHHHHHTTCCCS-S----CCCCSSEEEEEEEE-TTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEE
T ss_pred             EEEEEECCCCCCHHHHHHHHcCCCCC-c----ccceEeeeeeeccc-cccceeeeecCcchhhhhHHHhhhhhhhcceee
Confidence            79999999999999999999987542 2    23344444455555 7889999999998776544443  889999999


Q ss_pred             EECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           98 FSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        98 ~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      ++.++..+..+ ...+..+..... ....|+++|+||+|...
T Consensus        77 ~d~~d~~~~~~~~~~~~~~~~~~~-~~~~p~iiv~nK~Dl~~  117 (165)
T d1ksha_          77 VDSADRQRMQDCQRELQSLLVEER-LAGATLLIFANKQDLPG  117 (165)
T ss_dssp             EETTCGGGHHHHHHHHHHHHTCGG-GTTCEEEEEEECTTSTT
T ss_pred             eecccchhHHHHHHhhhhhhhhcc-cCCCceEEEEecccccc
Confidence            99986655554 333333322111 12368999999999543

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.67  E-value=2.5e-16  Score=114.04  Aligned_cols=139  Identities=19%  Similarity=0.108  Sum_probs=90.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAAL   95 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~l   95 (240)
                      .+|+++|++|+|||||++++++........++.+.+...  ..... .+  ..+.+|||+|...+......  ..+++++
T Consensus         3 iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~--~~~~~-~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   79 (164)
T d1z2aa1           3 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLE--RQIQV-NDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV   79 (164)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEE--EEEEE-TTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccce--eeeee-cCceeeeeeeccCCccchhhhhhhhhccCceEE
Confidence            689999999999999999998765433333222222222  22222 33  36689999999888766655  8999999


Q ss_pred             EEEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCCCCCcccHHHHhcccCCchHHHHHHHhCCcEEEEeCC
Q 036363           96 VVFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDELEANDETLEDYLGRECPKPLKEILHLFDNRCVLFDNK  173 (240)
Q Consensus        96 ~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (240)
                      +|+|++++.+.+.. .++..+.+..+.   .|+++|.||+|.........         ...+.+.+..+.+|+..+..
T Consensus        80 ~v~d~~~~~s~~~~~~~~~~i~~~~~~---~~iilVgnK~Dl~~~~~v~~---------~~~~~~~~~~~~~~~e~Sak  146 (164)
T d1z2aa1          80 LVFSTTDRESFEAISSWREKVVAEVGD---IPTALVQNKIDLLDDSCIKN---------EEAEGLAKRLKLRFYRTSVK  146 (164)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHCS---CCEEEEEECGGGGGGCSSCH---------HHHHHHHHHHTCEEEECBTT
T ss_pred             EEEeccchhhhhhcccccccccccCCC---ceEEEeeccCCcccceeeee---------hhhHHHHHHcCCEEEEeccC
Confidence            99999876665543 445556555443   67999999999654321111         12344555556666554544

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.66  E-value=9.2e-16  Score=114.09  Aligned_cols=117  Identities=18%  Similarity=0.159  Sum_probs=79.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEe-CCcEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363           19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLK-DGQVVNVIDTPGLFDFSAGSEF--DEIHAAL   95 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l   95 (240)
                      ..+|+|+|+.|+|||||++++++...........+.+...  ...... ....+.+|||||...+...+..  ..+|+++
T Consensus         6 ~~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~--~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~~i   83 (194)
T d2bcgy1           6 LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKI--KTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGII   83 (194)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEE--EEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEE--EEEEEeeEEEEEEEEECCCchhhHHHHHHHhccCCEEE
Confidence            3789999999999999999998765433333333333322  223331 2346789999999988776665  8999999


Q ss_pred             EEEECCCCCCHHHHH-HHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363           96 VVFSVRSRFSQEEEA-TLHSLQTLFGKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        96 ~v~~~~~~~~~~~~~-~l~~l~~~~~~~~~~~~i~v~~~~D~~~~  139 (240)
                      +|+|++++.+..... .+..+.....  ...|+++|.||+|....
T Consensus        84 ~v~d~t~~~s~~~~~~~~~~~~~~~~--~~~~iilv~nK~D~~~~  126 (194)
T d2bcgy1          84 IVYDVTDQESFNGVKMWLQEIDRYAT--STVLKLLVGNKCDLKDK  126 (194)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHSC--TTCEEEEEEECTTCTTT
T ss_pred             EEEeCcchhhhhhHhhhhhhhhhccc--CCceEEEEEeccccccc
Confidence            999998666655543 3334433322  33689999999995543

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.65  E-value=5.9e-17  Score=120.40  Aligned_cols=115  Identities=17%  Similarity=0.235  Sum_probs=87.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCC------c--------cccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCC
Q 036363           19 VRTVVLVGHTGNGKSATGNSILGRRA------F--------KSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSA   84 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g~~~------~--------~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~   84 (240)
                      ..+|+++|+.++|||||+++|++...      +        .......+.|.......+.+ .++.+.++||||+.+|..
T Consensus         3 ~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~-~~~~~~~iDtPGh~~f~~   81 (196)
T d1d2ea3           3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYST-AARHYAHTDCPGHADYVK   81 (196)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEEC-SSCEEEEEECSSHHHHHH
T ss_pred             CcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEe-ceeeEEeecCcchHHHHH
Confidence            47999999999999999999975210      0        00111246677766667777 888999999999988754


Q ss_pred             CCcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           85 GSEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        85 ~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      ....  ..+|++++|+|+..++..+.++.+..+... +   .+++|+++||+|...
T Consensus        82 ~~~~~~~~aD~allVVda~~G~~~QT~~~~~~a~~~-~---~~~iIv~iNK~D~~~  133 (196)
T d1d2ea3          82 NMITGTAPLDGCILVVAANDGPMPQTREHLLLARQI-G---VEHVVVYVNKADAVQ  133 (196)
T ss_dssp             HHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHT-T---CCCEEEEEECGGGCS
T ss_pred             HHHHHHhhcCeEEEEEEcCCCCchhHHHHHHHHHHh-c---CCcEEEEEecccccc
Confidence            4332  789999999999999999888887777543 2   257899999999764

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.65  E-value=1.3e-15  Score=110.93  Aligned_cols=110  Identities=24%  Similarity=0.275  Sum_probs=76.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC-----------C
Q 036363           21 TVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF-----------D   89 (240)
Q Consensus        21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~-----------~   89 (240)
                      +|+++|++|+|||||+|+|+|......+. ..+.|.......... ....+.++||||+.........           .
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~~~~~~~-~~~~t~~~~~~~~~~-~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~   79 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKKKAIVED-EEGVTRDPVQDTVEW-YGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIR   79 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC---------------CCSEEEEEE-TTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcceecc-cCceeeccccccccc-cccccccccccceeeeeccccccccccccccccc
Confidence            69999999999999999999976432222 234444444444444 6778899999998776544333           7


Q ss_pred             CceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363           90 EIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDEL  137 (240)
Q Consensus        90 ~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~  137 (240)
                      .+|+++++++.+......+...+..+... +    .|+++|+||+|.+
T Consensus        80 ~ad~i~~~~~~~~~~~~~~~~~~~~l~~~-~----~pviiv~NK~Dl~  122 (171)
T d1mkya1          80 EADLVLFVVDGKRGITKEDESLADFLRKS-T----VDTILVANKAENL  122 (171)
T ss_dssp             TCSEEEEEEETTTCCCHHHHHHHHHHHHH-T----CCEEEEEESCCSH
T ss_pred             cCcEEEEeecccccccccccccccccccc-c----ccccccchhhhhh
Confidence            88999999999888888887777766542 2    4699999999955

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.64  E-value=3.8e-16  Score=115.05  Aligned_cols=107  Identities=20%  Similarity=0.211  Sum_probs=73.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC------------
Q 036363           21 TVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF------------   88 (240)
Q Consensus        21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~------------   88 (240)
                      .|+|+|++|||||||+|+|+|.....+  ...++|....  ...+ .  .+.++||||+.........            
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~~~~~--~~~g~T~~~~--~~~~-~--~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~   74 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKKVRRG--KRPGVTRKII--EIEW-K--NHKIIDMPGFGFMMGLPKEVQERIKDEIVHF   74 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCCCSSS--SSTTCTTSCE--EEEE-T--TEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceee--CCCCEeeccc--cccc-c--cceecccCCceeccccccccccccchhhhhh
Confidence            699999999999999999999765322  2244555433  2333 3  4678999998665444321            


Q ss_pred             -----CCceEEEEEEECCC-----------CCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363           89 -----DEIHAALVVFSVRS-----------RFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        89 -----~~~~~~l~v~~~~~-----------~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~  139 (240)
                           ..+|++++|+|+..           .....+...+..+...     ..|+++|+||+|.+.+
T Consensus        75 ~~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~-----~~p~iiv~NK~D~~~~  136 (184)
T d2cxxa1          75 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLREL-----DIPTIVAVNKLDKIKN  136 (184)
T ss_dssp             HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHT-----TCCEEEEEECGGGCSC
T ss_pred             hhhcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHHc-----CCCEEEEEeeeehhhh
Confidence                 67899999999852           3444445555555431     2579999999997754

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.64  E-value=5.1e-15  Score=108.84  Aligned_cols=115  Identities=14%  Similarity=0.100  Sum_probs=77.9

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEE
Q 036363           17 NGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAA   94 (240)
Q Consensus        17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~   94 (240)
                      ....+|+++|++|||||||++.|.+...... .+    |.......... .+..+.+|||||...+......  ..++++
T Consensus        15 ~k~~KI~lvG~~~vGKTsLi~~l~~~~~~~~-~~----t~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~~~i   88 (182)
T d1moza_          15 NKELRILILGLDGAGKTTILYRLQIGEVVTT-KP----TIGFNVETLSY-KNLKLNVWDLGGQTSIRPYWRCYYADTAAV   88 (182)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCCSEEEEE-CS----STTCCEEEEEE-TTEEEEEEEEC----CCTTGGGTTTTEEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCcc-cc----ccceEEEEEee-CCEEEEEEecccccccchhHHhhhccceeE
Confidence            3449999999999999999999987754322 22    22222333444 7788999999999988776665  899999


Q ss_pred             EEEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           95 LVVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        95 l~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      ++|+|.++..+..+ ...+..+.... .....|+++|.||+|...
T Consensus        89 i~v~d~~d~~s~~~~~~~l~~~~~~~-~~~~~piliv~NK~Dl~~  132 (182)
T d1moza_          89 IFVVDSTDKDRMSTASKELHLMLQEE-ELQDAALLVFANKQDQPG  132 (182)
T ss_dssp             EEEEETTCTTTHHHHHHHHHHHTTSS-TTSSCEEEEEEECTTSTT
T ss_pred             EEEeeecccccchhHHHHHHHHHHhh-ccCCcceEEEEEeecccc
Confidence            99999997777664 33343332221 122378999999999543

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=5e-16  Score=112.91  Aligned_cols=113  Identities=24%  Similarity=0.111  Sum_probs=68.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAAL   95 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~l   95 (240)
                      .+|+++|.+|+|||||++.+.+..... .....+.+.   .....+ ++  ..+.+|||||...+......  ..+|+++
T Consensus         2 fKi~lvG~~~vGKTsLi~~~~~~~~~~-~~~~~~~~~---~~~i~~-~~~~~~l~i~D~~g~e~~~~~~~~~~~~~d~~i   76 (168)
T d2gjsa1           2 YKVLLLGAPGVGKSALARIFGGVEDGP-EAEAAGHTY---DRSIVV-DGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYV   76 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTC----------CEEE---EEEEEE-TTEEEEEEEEECC-------CHHHHHTSCSEEE
T ss_pred             eEEEEECCCCcCHHHHHHHHhCCccCC-cCCeeeeee---cceeec-cccccceeeeecccccccceecccchhhhhhhc
Confidence            689999999999999999999875322 111111111   122333 44  36789999999887665554  8999999


Q ss_pred             EEEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           96 VVFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        96 ~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      +|+|++++.+.... .++..+....+ ....|+++|.||+|...
T Consensus        77 lv~d~t~~~s~~~~~~~~~~i~~~~~-~~~~piilvgnK~Dl~~  119 (168)
T d2gjsa1          77 IVYSVTDKGSFEKASELRVQLRRARQ-TDDVPIILVGNKSDLVR  119 (168)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCGG
T ss_pred             eeccccccccccccccccchhhcccc-cccceEEEeecccchhh
Confidence            99999976666653 44444544433 23357999999999543

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.64  E-value=1.9e-16  Score=115.28  Aligned_cols=115  Identities=10%  Similarity=0.086  Sum_probs=75.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEE
Q 036363           19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAA   94 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~   94 (240)
                      ..+|+++|++|+|||||++++++...........+.+.  ....... ..  ..+.+|||||...+......  ..+|++
T Consensus         5 ~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~l~~wDt~G~e~~~~~~~~~~~~ad~~   81 (169)
T d3raba_           5 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDF--KVKTIYR-NDKRIKLQIWDTAGQERYRTITTAYYRGAMGF   81 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEE--EEEEEEE-TTEEEEEEEEEECCSGGGHHHHHTTTTTCCEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHcCCCCcccccccccce--eeEEEEe-ecceEEEEEEECCCchhhHHHHHHHHhcCCEE
Confidence            37899999999999999999987654333333232222  2222322 33  36789999998766543333  889999


Q ss_pred             EEEEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           95 LVVFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        95 l~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      ++|+|.++.-+.... ..+..+...  .....++++|.||+|...
T Consensus        82 ilv~d~~~~~s~~~~~~~~~~~~~~--~~~~~~iivv~nK~D~~~  124 (169)
T d3raba_          82 ILMYDITNEESFNAVQDWSTQIKTY--SWDNAQVLLVGNKCDMED  124 (169)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHH--CCSCCEEEEEEECTTCGG
T ss_pred             EEEEECccchhhhhhhhhhhhhhcc--cCCcceEEEEEeeccccc
Confidence            999999865444433 333333333  223467889999999543

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=5.2e-16  Score=113.54  Aligned_cols=114  Identities=21%  Similarity=0.210  Sum_probs=79.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAAL   95 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~l   95 (240)
                      .+|+++|++|+|||||++++++...........+  .......... ++  ..+.+|||||...+......  ..+|+++
T Consensus         5 ~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~i~d~~g~e~~~~~~~~~~~~~~~~i   81 (175)
T d2f9la1           5 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIG--VEFATRSIQV-DGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL   81 (175)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHSCCCC---CCCS--CEEEEEEEEE-TTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCccccccc--ceeeeEEEEE-CCEEEEEEecccCCcHHHHHHHHHHhhccCeEE
Confidence            7899999999999999999988665433332222  2222233333 44  36789999999887766655  8999999


Q ss_pred             EEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           96 VVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        96 ~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      +|++.+++.+... ...+..+....+.  ..|+++|.||+|...
T Consensus        82 ~v~d~~~~~S~~~~~~~~~~i~~~~~~--~~piilvgnK~Dl~~  123 (175)
T d2f9la1          82 LVYDIAKHLTYENVERWLKELRDHADS--NIVIMLVGNKSDLRH  123 (175)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCGG
T ss_pred             EEEECCCcccchhHHHHHHHHHHhcCC--CCcEEEEEeeecccc
Confidence            9999986655554 4555666555443  368999999999543

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=3.3e-16  Score=114.08  Aligned_cols=112  Identities=23%  Similarity=0.212  Sum_probs=75.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEE-eC--CcEEEEEeCCCCCCCCCCCcC--CCceEE
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVL-KD--GQVVNVIDTPGLFDFSAGSEF--DEIHAA   94 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~--~~~~~l~DtpG~~~~~~~~~~--~~~~~~   94 (240)
                      .+|+++|++|+|||||++++++........+    |....+..... .+  ...+.+|||||...+......  ..+|++
T Consensus         4 ~Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~----Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~   79 (170)
T d1i2ma_           4 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVA----TLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCA   79 (170)
T ss_dssp             EEEEEEECTTSSHHHHHHTTC-----CCEEE----ETTEEEEEEEECBTTCCEEEEEEECTTHHHHSSCGGGGTTTCCEE
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCccccc----ceeccccccccccccccccccccccccccccceecchhcccccch
Confidence            6899999999999999999987664332221    22222222222 12  347899999998887766655  899999


Q ss_pred             EEEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           95 LVVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        95 l~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      ++|+|++++.+... ..++..+.....   ..|+++|.||+|...
T Consensus        80 ilv~d~~~~~Sf~~~~~~~~~~~~~~~---~~piilvgnK~Dl~~  121 (170)
T d1i2ma_          80 IIMFDVTSRVTYKNVPNWHRDLVRVCE---NIPIVLCGNKVDIKD  121 (170)
T ss_dssp             EEEEETTSGGGGTTHHHHHHHHHHHHC---SCCEEEEEECCCCSC
T ss_pred             hhccccccccccchhHHHHHHHhhccC---CCceeeecchhhhhh
Confidence            99999997766554 345555544433   368999999999543

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.63  E-value=2.3e-15  Score=109.95  Aligned_cols=119  Identities=14%  Similarity=0.109  Sum_probs=70.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEEEE
Q 036363           19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAALV   96 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~   96 (240)
                      ..+|+++|++|+|||||++++++........+..+.+.........-.....+.+|||||...+......  ..++++++
T Consensus         2 ~~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   81 (175)
T d1ky3a_           2 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVL   81 (175)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCchhhhhHHHHHhhccceEEE
Confidence            4789999999999999999998766443332222222221111111001235789999998877665544  89999999


Q ss_pred             EEECCCCCCHHH-HHHHHHHHHHhCCC--cCCeEEEEEeCCCCC
Q 036363           97 VFSVRSRFSQEE-EATLHSLQTLFGKN--CFDYMIVVFSGRDEL  137 (240)
Q Consensus        97 v~~~~~~~~~~~-~~~l~~l~~~~~~~--~~~~~i~v~~~~D~~  137 (240)
                      |+++++..+... ..++..+.......  ...|+++|+||+|..
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~  125 (175)
T d1ky3a_          82 VYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAE  125 (175)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSC
T ss_pred             EeecccccccchhhhcchhhhhhhhhcccccCcEEEEecccchh
Confidence            999986666554 34555555554422  235799999999954

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=8e-16  Score=112.75  Aligned_cols=115  Identities=17%  Similarity=0.168  Sum_probs=76.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAAL   95 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~l   95 (240)
                      .+|+++|..|+|||||++++++...........  +.......... ++  ..+.+|||||...+......  ..+|+++
T Consensus         8 iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii   84 (177)
T d1x3sa1           8 LKILIIGESGVGKSSLLLRFTDDTFDPELAATI--GVDFKVKTISV-DGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVI   84 (177)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCC--SEEEEEEEEEE-TTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEE
T ss_pred             eEEEEECCCCcCHHHHHHHHHhCCCCCccccce--eecceeEEEEE-eccccEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence            789999999999999999999876433333222  22222223333 33  36789999999887665544  8999999


Q ss_pred             EEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           96 VVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        96 ~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      +|++++++.+... ..++..+... ......+++++.||.|...
T Consensus        85 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~~~i~~~~nk~d~~~  127 (177)
T d1x3sa1          85 LVYDVTRRDTFVKLDNWLNELETY-CTRNDIVNMLVGNKIDKEN  127 (177)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHTTC-CSCSCCEEEEEEECTTSSS
T ss_pred             EEEECCCccccccchhhhhhhccc-ccccceeeEEEeecccccc
Confidence            9999985444433 2333333222 2334577889999999554

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.63  E-value=2e-15  Score=109.42  Aligned_cols=141  Identities=13%  Similarity=0.139  Sum_probs=87.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEE
Q 036363           19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAA   94 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~   94 (240)
                      ..+|+++|.+|+|||||++++++...........+  .......... ++  ..+.+|||||...+......  ..++++
T Consensus         2 ~~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~--~~~~~~~i~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   78 (166)
T d1g16a_           2 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIG--IDFKIKTVDI-NGKKVKLQIWDTAGQERFRTITTAYYRGAMGI   78 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCC---------CCEEEEEEES-SSCEEEEEEECCTTGGGTSCCCHHHHTTEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCCccc--eeEEEEEEEE-CCEEEEEEEEECCCchhhHHHHHHHHhcCCEE
Confidence            37899999999999999999998765433332222  2222233333 33  35678999998877665554  999999


Q ss_pred             EEEEECCCCCCHHHHHHH-HHHHHHhCCCcCCeEEEEEeCCCCCCCCcccHHHHhcccCCchHHHHHHHhCCcEEEEeCC
Q 036363           95 LVVFSVRSRFSQEEEATL-HSLQTLFGKNCFDYMIVVFSGRDELEANDETLEDYLGRECPKPLKEILHLFDNRCVLFDNK  173 (240)
Q Consensus        95 l~v~~~~~~~~~~~~~~l-~~l~~~~~~~~~~~~i~v~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (240)
                      ++|+|.+++-+......+ ......  .....+++++.++.|..... .. .        .....+....+.+|+..+..
T Consensus        79 i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~~~~i~~~~k~d~~~~~-~~-~--------~~~~~~~~~~~~~~~~~Sa~  146 (166)
T d1g16a_          79 ILVYDITDERTFTNIKQWFKTVNEH--ANDEAQLLLVGNKSDMETRV-VT-A--------DQGEALAKELGIPFIESSAK  146 (166)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHH--SCTTCEEEEEEECTTCTTCC-SC-H--------HHHHHHHHHHTCCEEECBTT
T ss_pred             EEEEECCCccCHHHHHhhhhhhhcc--ccCcceeeeecchhhhhhhh-hh-H--------HHHHHHHHhcCCeEEEECCC
Confidence            999999966555544333 233322  22346788889998854432 11 1        12344455556667666644


Q ss_pred             C
Q 036363          174 T  174 (240)
Q Consensus       174 ~  174 (240)
                      .
T Consensus       147 ~  147 (166)
T d1g16a_         147 N  147 (166)
T ss_dssp             T
T ss_pred             C
Confidence            3

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.62  E-value=2.9e-15  Score=109.26  Aligned_cols=115  Identities=14%  Similarity=0.135  Sum_probs=57.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAAL   95 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~l   95 (240)
                      .+|+++|.+|+|||||++++++........  ...+.......... ++  ..+.+|||||...+......  ..+|+++
T Consensus         7 ~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~--~t~~~~~~~~~~~~-~~~~~~l~i~D~~G~e~~~~~~~~~~~~~~~~i   83 (173)
T d2fu5c1           7 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFI--STIGIDFKIRTIEL-DGKRIKLQIWDTAGQERFRTITTAYYRGAMGIM   83 (173)
T ss_dssp             EEEEEECCCCC----------------CHH--HHHCEEEEEEEEEE-TTEEEEEEEEEC---------CCTTTTTCSEEE
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCccC--ccccceEEEEEEEE-CCEEEEEEEEECCCchhhHHHHHHhccCCCEEE
Confidence            689999999999999999999765432221  12222333334444 44  35678999999888776665  8999999


Q ss_pred             EEEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363           96 VVFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        96 ~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~  139 (240)
                      +|+|.+++.+.... .++..+....  ....|+++|.||.|....
T Consensus        84 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~iilv~~k~D~~~~  126 (173)
T d2fu5c1          84 LVYDITNEKSFDNIRNWIRNIEEHA--SADVEKMILGNKCDVNDK  126 (173)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHS--CTTCEEEEEEEC--CCSC
T ss_pred             EEEECCChhhHHHHHHHHHHhhhhc--cCCceEEEEEecccchhh
Confidence            99999876666553 3334443332  223679999999996544

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.62  E-value=2.7e-15  Score=109.67  Aligned_cols=118  Identities=16%  Similarity=0.113  Sum_probs=80.8

Q ss_pred             CCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCce
Q 036363           15 PSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIH   92 (240)
Q Consensus        15 ~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~   92 (240)
                      ++....+|+++|++|+|||||+|+|.+.......     .+.......... .+..+.+||+||...+......  ..+|
T Consensus        12 ~~~~~~kI~vvG~~~vGKSsLi~~l~~~~~~~~~-----~~~~~~~~~i~~-~~~~~~i~d~~g~~~~~~~~~~~~~~~~   85 (176)
T d1fzqa_          12 APDQEVRILLLGLDNAGKTTLLKQLASEDISHIT-----PTQGFNIKSVQS-QGFKLNVWDIGGQRKIRPYWRSYFENTD   85 (176)
T ss_dssp             CCSSCEEEEEEESTTSSHHHHHHHHCCSCCEEEE-----EETTEEEEEEEE-TTEEEEEEECSSCGGGHHHHHHHHTTCS
T ss_pred             CCCCEEEEEEECCCCCCHHHHHHHHhcCCCCcce-----eeeeeeEEEecc-CCeeEeEeeccccccchhHHHHHhhccc
Confidence            3344589999999999999999999887642221     111223334444 6788999999998876544433  8899


Q ss_pred             EEEEEEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363           93 AALVVFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        93 ~~l~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~  139 (240)
                      ++++|+|+++..+..+. ..+..+..... ....|+++|+||+|....
T Consensus        86 ~ii~v~d~~d~~s~~~~~~~~~~~~~~~~-~~~~pillv~nK~Dl~~~  132 (176)
T d1fzqa_          86 ILIYVIDSADRKRFEETGQELTELLEEEK-LSCVPVLIFANKQDLLTA  132 (176)
T ss_dssp             EEEEEEETTCGGGHHHHHHHHHHHTTCGG-GTTCCEEEEEECTTSTTC
T ss_pred             eeEEeeccccccchhhhhhhhhhhhhhhc-cCCCeEEEEEEecccccc
Confidence            99999999976666543 33333322222 123679999999997654

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=99.62  E-value=3.4e-15  Score=107.92  Aligned_cols=114  Identities=18%  Similarity=0.085  Sum_probs=79.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEEEE
Q 036363           19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAALV   96 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~   96 (240)
                      ..+|+++|++|+|||||++.|.+........    .|....+..... ++..+.+||+||...+......  ..++++++
T Consensus         2 e~ki~i~G~~~~GKTsLl~~l~~~~~~~~~~----~T~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   76 (164)
T d1zd9a1           2 EMELTLVGLQYSGKTTFVNVIASGQFNEDMI----PTVGFNMRKITK-GNVTIKLWDIGGQPRFRSMWERYCRGVSAIVY   76 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCCSCC----CCCSEEEEEEEE-TTEEEEEEEECCSHHHHTTHHHHHTTCSEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHHcCCCCCccc----ccceeeeeeeee-eeEEEEEeeccccccccccccccccccchhhc
Confidence            4799999999999999999998765432222    234444445555 7889999999998766554444  88999999


Q ss_pred             EEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           97 VFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        97 v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      |+++++..+... ...+..+..... ....|+++|.||.|...
T Consensus        77 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~pi~lv~nK~Dl~~  118 (164)
T d1zd9a1          77 MVDAADQEKIEASKNELHNLLDKPQ-LQGIPVLVLGNKRDLPG  118 (164)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTCGG-GTTCCEEEEEECTTSTT
T ss_pred             ccccccccccchhhhhhhhhhhhhc-ccCCcEEEEEeccccch
Confidence            999986655543 233333332211 12367999999999543

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=4e-16  Score=113.71  Aligned_cols=140  Identities=14%  Similarity=0.136  Sum_probs=87.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCc--EEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQ--VVNVIDTPGLFDFSAGSEF--DEIHAAL   95 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~--~~~~~~l   95 (240)
                      .+|+++|.+|+|||||++++++.........  ..+.......... ++.  .+.+|||||...+......  ..+++++
T Consensus         6 ~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~~--~~~~~~~~~~~~~-~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~~~~i   82 (171)
T d2ew1a1           6 FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGA--TIGVDFMIKTVEI-NGEKVKLQIWDTAGQERFRSITQSYYRSANALI   82 (171)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSSCCTTCCC--CCSEEEEEEEEEE-TTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEE
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCcccc--cccceEEEEEEEE-CCEEEEEEEEECCCchhhHHHHHHHHhccceEE
Confidence            7899999999999999999997664333222  2233333333444 443  5678999998766544333  8899999


Q ss_pred             EEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCCcccHHHHhcccCCchHHHHHHHhCCcEEEEeCC
Q 036363           96 VVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELEANDETLEDYLGRECPKPLKEILHLFDNRCVLFDNK  173 (240)
Q Consensus        96 ~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (240)
                      +|++.+++.+... ...+..+.....  ...|+++|.||+|.........+         ....+.+..+.+++..+..
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~~~ilvgnK~D~~~~~~v~~~---------~~~~~~~~~~~~~~~~SAk  150 (171)
T d2ew1a1          83 LTYDITCEESFRCLPEWLREIEQYAS--NKVITVLVGNKIDLAERREVSQQ---------RAEEFSEAQDMYYLETSAK  150 (171)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECGGGGGGCSSCHH---------HHHHHHHHHTCCEEECCTT
T ss_pred             Eeeecccchhhhhhhhhhhhhccccc--ccccEEEEEeecccccccchhhh---------HHHHHHHhCCCEEEEEccC
Confidence            9999986555544 344444444322  24679999999995433211111         2344455556666555543

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=99.62  E-value=3.5e-16  Score=121.14  Aligned_cols=113  Identities=27%  Similarity=0.308  Sum_probs=89.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccc-------cC---------CCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCC
Q 036363           19 VRTVVLVGHTGNGKSATGNSILGRRAFKS-------RA---------SSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDF   82 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~-------~~---------~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~   82 (240)
                      .++|+++|+.|+|||||+.+|+.......       +.         ...+.|.........| ++..++++||||+.+|
T Consensus         2 iRNv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~-~~~~~n~iDtPGh~dF   80 (267)
T d2dy1a2           2 IRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLF-RGHRVFLLDAPGYGDF   80 (267)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEE-TTEEEEEEECCCSGGG
T ss_pred             eeEEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccc-cccceeEEccCchhhh
Confidence            47899999999999999999853221110       10         1135566777778888 9999999999999999


Q ss_pred             CCCCcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363           83 SAGSEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDEL  137 (240)
Q Consensus        83 ~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~  137 (240)
                      ......  ..+|++++|+++..+...+....|+.+.+.     ..|.++++||+|..
T Consensus        81 ~~e~~~al~~~D~avlvvda~~Gv~~~t~~~~~~~~~~-----~~p~~i~iNk~D~~  132 (267)
T d2dy1a2          81 VGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERL-----GLPRMVVVTKLDKG  132 (267)
T ss_dssp             HHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHT-----TCCEEEEEECGGGC
T ss_pred             hhhhhhhhcccCceEEEeeccCCccchhHHHHHhhhhc-----cccccccccccccc
Confidence            776655  889999999999999999999999988643     25688899999963

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.62  E-value=5.8e-16  Score=111.48  Aligned_cols=111  Identities=22%  Similarity=0.298  Sum_probs=79.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC-----------
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF-----------   88 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~-----------   88 (240)
                      .+|+|+|.+|+|||||+|+|+|........ ..+.+.......... .+..+.++||||+.........           
T Consensus         1 ikI~liG~~n~GKSSLin~l~g~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~   78 (160)
T d1xzpa2           1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTD-IPGTTRDVISEEIVI-RGILFRIVDTAGVRSETNDLVERLGIERTLQEI   78 (160)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHTBCCCCC-SSCCSSCSCCEEEEE-TTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeec-cccccccceeEEEEe-CCeeEEeccccccccCCccHHHHHHHHHHHHHH
Confidence            479999999999999999999875433322 233444444444555 7888999999998655432221           


Q ss_pred             CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363           89 DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        89 ~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~  139 (240)
                      ..+|++++|+|++++....+......+.    .   .++++++||.|....
T Consensus        79 ~~ad~ii~v~d~~~~~~~~~~~~~~~~~----~---~~~i~~~~k~d~~~~  122 (160)
T d1xzpa2          79 EKADIVLFVLDASSPLDEEDRKILERIK----N---KRYLVVINKVDVVEK  122 (160)
T ss_dssp             HHCSEEEEEEETTSCCCHHHHHHHHHHT----T---SSEEEEEEECSSCCC
T ss_pred             HhCCEEEEEEeCCCCcchhhhhhhhhcc----c---ccceeeeeeccccch
Confidence            6789999999999888877766555442    2   568999999997654

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=2.5e-14  Score=103.60  Aligned_cols=114  Identities=22%  Similarity=0.206  Sum_probs=79.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCc--EEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQ--VVNVIDTPGLFDFSAGSEF--DEIHAAL   95 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~--~~~~~~l   95 (240)
                      .+|+++|+.|+|||||++++++........++.+...   .....+ ++.  .+.+|||+|...+......  ..+|+++
T Consensus         5 ~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~---~~~~~~-~~~~~~l~i~d~~g~~~~~~~~~~~~~~~d~~i   80 (167)
T d1xtqa1           5 RKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF---TKLITV-NGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYI   80 (167)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEE---EEEEEE-TTEEEEEEEEECCCCCTTCCCCGGGTSSCCEEE
T ss_pred             eEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeccc---ceEEec-CcEEEEeeecccccccccccccchhhhhhhhhh
Confidence            7999999999999999999987654332222222111   122233 443  5678999999988766555  8999999


Q ss_pred             EEEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           96 VVFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        96 ~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      +|+|++++.+.... .++..+....+.. ..|+++|.||+|...
T Consensus        81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~-~~piilvgnK~Dl~~  123 (167)
T d1xtqa1          81 LVYSVTSIKSFEVIKVIHGKLLDMVGKV-QIPIMLVGNKKDLHM  123 (167)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHCSS-CCCEEEEEECTTCGG
T ss_pred             hhcccchhhhhhhhhhhhhhhhhccccc-ccceeeecccccccc
Confidence            99999976666653 4455666655543 357999999999543

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=6.5e-15  Score=106.76  Aligned_cols=141  Identities=15%  Similarity=0.151  Sum_probs=85.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAAL   95 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~l   95 (240)
                      .+|+|+|.+|+|||||++++++........++.+..  ........ ++  ..+.+|||+|...+......  .++|+++
T Consensus         4 fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~--~~~~~~~~-~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   80 (167)
T d1z08a1           4 FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGAS--FLTKKLNI-GGKRVNLAIWDTAGQERFHALGPIYYRDSNGAI   80 (167)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCE--EEEEEEES-SSCEEEEEEEECCCC-------CCSSTTCSEEE
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCcccccccccc--hheeeecc-CCccceeeeeccCCcceecccchhhccCCceeE
Confidence            689999999999999999998766443333222222  22222222 32  46789999999887766555  8999999


Q ss_pred             EEEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCCCCCcccHHHHhcccCCchHHHHHHHhCCcEEEEeCCC
Q 036363           96 VVFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDELEANDETLEDYLGRECPKPLKEILHLFDNRCVLFDNKT  174 (240)
Q Consensus        96 ~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (240)
                      +|+|++++.+.... .++..+.....  ...++++|.||+|.........         .....+....+.+|+..+...
T Consensus        81 ~v~d~~~~~Sf~~~~~~~~~~~~~~~--~~~~~ilvgnK~Dl~~~~~v~~---------~e~~~~a~~~~~~~~e~Sak~  149 (167)
T d1z08a1          81 LVYDITDEDSFQKVKNWVKELRKMLG--NEICLCIVGNKIDLEKERHVSI---------QEAESYAESVGAKHYHTSAKQ  149 (167)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHG--GGSEEEEEEECGGGGGGCCSCH---------HHHHHHHHHTTCEEEEEBTTT
T ss_pred             EEEeCCchhHHHhhhhhhhhcccccc--cccceeeeccccccccccccch---------HHHHHHHHHcCCeEEEEecCC
Confidence            99999976666653 44444443332  2367889999999544321111         123445555566676666543

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=1.7e-15  Score=109.56  Aligned_cols=114  Identities=16%  Similarity=0.122  Sum_probs=78.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAAL   95 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~l   95 (240)
                      .+|+++|..|+|||||++++++...........  +.......... ++  ..+.+|||+|...+......  ..+|+++
T Consensus         1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   77 (164)
T d1yzqa1           1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATI--GIDFLSKTMYL-EDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAV   77 (164)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCC--SEEEEEEEEEC-SSCEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred             CEEEEECCCCcCHHHHHHHHHhCCCCCccccce--eeeccceeecc-CCCceeeeecccCCcchhccchHHHhhccceEE
Confidence            379999999999999999999776443333222  22222222222 33  36789999999877655444  9999999


Q ss_pred             EEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           96 VVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        96 ~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      +|++.+++.+... ..++..+......  ..|+++|.||+|...
T Consensus        78 lv~d~~~~~s~~~i~~~~~~~~~~~~~--~~~iilvgnK~Dl~~  119 (164)
T d1yzqa1          78 VVYDITNVNSFQQTTKWIDDVRTERGS--DVIIMLVGNKTDLAD  119 (164)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHTT--SSEEEEEEECTTCGG
T ss_pred             EeeccccccchhhhHhhHHHHHHhcCC--CceEEEEecccchhh
Confidence            9999986666655 4555555554433  368999999999543

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=1.6e-15  Score=109.92  Aligned_cols=113  Identities=18%  Similarity=0.204  Sum_probs=77.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCc--EEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQ--VVNVIDTPGLFDFSAGSEF--DEIHAAL   95 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~--~~~~~~l   95 (240)
                      .+|+|+|.+|+|||||++++++.........  ..+.......... ++.  .+.+|||||...+......  ..+|+++
T Consensus         5 ~KivlvG~~~vGKTsli~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~l~i~D~~g~~~~~~~~~~~~~~~d~~i   81 (166)
T d1z0fa1           5 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPH--TIGVEFGTRIIEV-SGQKIKLQIWDTAGQERFRAVTRSYYRGAAGAL   81 (166)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCSSCTT--SCCCCEEEEEEEE-TTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEE
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCcccc--cccccceeEEEEE-CCEEEEEEEeccCCchhHHHHHHHHhcCCcEEE
Confidence            6899999999999999999997765433332  2222233333334 443  6789999998776554444  8899999


Q ss_pred             EEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363           96 VVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDEL  137 (240)
Q Consensus        96 ~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~  137 (240)
                      +|+++++..+... ..++..+.....  ...|++++.||+|.-
T Consensus        82 lv~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iilvgnK~Dl~  122 (166)
T d1z0fa1          82 MVYDITRRSTYNHLSSWLTDARNLTN--PNTVIILIGNKADLE  122 (166)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCG
T ss_pred             EEeccCchHHHHHHHHHHHHHHhhcc--ccceEEEEcccccch
Confidence            9999986555543 344555544432  346899999999943

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.60  E-value=2.5e-14  Score=105.25  Aligned_cols=116  Identities=14%  Similarity=0.127  Sum_probs=77.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEe-CCcEEEEEeCCCCCCCCCCCcC--CCceEEEE
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLK-DGQVVNVIDTPGLFDFSAGSEF--DEIHAALV   96 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~   96 (240)
                      .+|+++|.+|||||||++++++.........+.+.+....  ..... ....+.+|||||..........  ..+|++++
T Consensus         3 ~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~--~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~   80 (184)
T d1vg8a_           3 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTK--EVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVL   80 (184)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEE--EEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEE
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeeee--eeeeCCceEEEEeeecCCcccccccccccccCccEEEE
Confidence            6899999999999999999997664433332222222222  22220 2346789999998877666655  89999999


Q ss_pred             EEECCCCCCHHH-HHHHHHHHHHhCC--CcCCeEEEEEeCCCCC
Q 036363           97 VFSVRSRFSQEE-EATLHSLQTLFGK--NCFDYMIVVFSGRDEL  137 (240)
Q Consensus        97 v~~~~~~~~~~~-~~~l~~l~~~~~~--~~~~~~i~v~~~~D~~  137 (240)
                      |++.++..+... ..++..+......  ....|+++|+||+|..
T Consensus        81 ~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~  124 (184)
T d1vg8a_          81 VFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE  124 (184)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS
T ss_pred             eecccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeeccc
Confidence            999985444443 3444455554432  1235799999999943

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=1.4e-15  Score=110.95  Aligned_cols=117  Identities=21%  Similarity=0.230  Sum_probs=80.2

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCc--EEEEEeCCCCCCCCCCCcC--CCc
Q 036363           16 SNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQ--VVNVIDTPGLFDFSAGSEF--DEI   91 (240)
Q Consensus        16 ~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~--~~~   91 (240)
                      +.+..+|+++|.+|+|||||++++++...... ..+.  ........... ++.  .+.+|||+|...+......  ..+
T Consensus         3 ~~~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~-~~~t--~~~~~~~~~~~-~~~~~~l~~~d~~g~~~~~~~~~~~~~~~   78 (173)
T d2fn4a1           3 PSETHKLVVVGGGGVGKSALTIQFIQSYFVSD-YDPT--IEDSYTKICSV-DGIPARLDILDTAGQEEFGAMREQYMRAG   78 (173)
T ss_dssp             SSCEEEEEEEECTTSSHHHHHHHHHHSSCCSS-CCTT--CCEEEEEEEEE-TTEEEEEEEEECCCTTTTSCCHHHHHHHC
T ss_pred             CCCeEEEEEECCCCcCHHHHHHHHHhCCCCcc-cccc--cccceeeEecc-CCeeeeeeccccccccccccccchhhccc
Confidence            44558999999999999999999987654322 2211  12222223333 443  5678999999988766554  889


Q ss_pred             eEEEEEEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363           92 HAALVVFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDEL  137 (240)
Q Consensus        92 ~~~l~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~  137 (240)
                      |++++|+|.++..+.... .++..+.+..+.. ..|+++|.||+|..
T Consensus        79 ~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~-~~p~ilvgnK~Dl~  124 (173)
T d2fn4a1          79 HGFLLVFAINDRQSFNEVGKLFTQILRVKDRD-DFPVVLVGNKADLE  124 (173)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHHHHHTSS-CCCEEEEEECGGGG
T ss_pred             eeeeeecccccccccchhhhhhHHHHHHhccC-CCceEEEEEeechh
Confidence            999999999966666553 4445555544332 35799999999954

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.60  E-value=9.9e-16  Score=125.85  Aligned_cols=110  Identities=21%  Similarity=0.208  Sum_probs=77.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCC---cceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC-------
Q 036363           19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSG---VTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF-------   88 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~---~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~-------   88 (240)
                      +.+|+|+|.+|+|||||+|+|+|......+....+   +|....  .+..++...+.+|||||+.........       
T Consensus        56 ~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~--~~~~~~~~~~~l~DtPG~~~~~~~~~~~~~~~~~  133 (400)
T d1tq4a_          56 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERH--PYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKF  133 (400)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCE--EEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTG
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeee--eeeccCCCeEEEEeCCCcccccccHHHHHHHhhh
Confidence            38999999999999999999999754433332222   333322  223335567899999999765543222       


Q ss_pred             CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363           89 DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDEL  137 (240)
Q Consensus        89 ~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~  137 (240)
                      ...|.++++.+  .+++..+...+..+.+.     ..|+++|+||+|..
T Consensus       134 ~~~d~~l~~~~--~~~~~~d~~l~~~l~~~-----~k~~~~V~nK~D~~  175 (400)
T d1tq4a_         134 YEYDFFIIISA--TRFKKNDIDIAKAISMM-----KKEFYFVRTKVDSD  175 (400)
T ss_dssp             GGCSEEEEEES--SCCCHHHHHHHHHHHHT-----TCEEEEEECCHHHH
T ss_pred             hcceEEEEecC--CCCCHHHHHHHHHHHHc-----CCCEEEEEeCcccc
Confidence            66777777765  47889998888888653     36899999999954

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=99.60  E-value=3e-15  Score=113.13  Aligned_cols=120  Identities=13%  Similarity=0.164  Sum_probs=86.0

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhCCCCccc-------------------------------cCCCCCcceeEEEEEEE
Q 036363           16 SNGVRTVVLVGHTGNGKSATGNSILGRRAFKS-------------------------------RASSSGVTSTCEMHRTV   64 (240)
Q Consensus        16 ~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~-------------------------------~~~~~~~t~~~~~~~~~   64 (240)
                      ..+..+|+++|+.++|||||+++|+.......                               .....+.+.........
T Consensus         6 ~~~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~   85 (222)
T d1zunb3           6 RKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS   85 (222)
T ss_dssp             SCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE
T ss_pred             cCCcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEEEe
Confidence            34568899999999999999999963211100                               00112344444445555


Q ss_pred             EeCCcEEEEEeCCCCCCCCCCCcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCC
Q 036363           65 LKDGQVVNVIDTPGLFDFSAGSEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEAN  140 (240)
Q Consensus        65 ~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~  140 (240)
                      + .++.+.++||||+.+|......  ..+|++++|+++..++..+..+.+..+.. +|   .+++++++||+|.....
T Consensus        86 ~-~~~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~~Qt~e~~~~~~~-~g---v~~iiv~vNK~D~~~~~  158 (222)
T d1zunb3          86 T-AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASL-LG---IKHIVVAINKMDLNGFD  158 (222)
T ss_dssp             C-SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHH-TT---CCEEEEEEECTTTTTSC
T ss_pred             c-cceEEEEEeccchhhhhhhhccccccCceEEEEeccccCcccchHHHHHHHHH-cC---CCEEEEEEEcccccccc
Confidence            5 7789999999999998655444  89999999999999999998877766653 33   36799999999976554

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=1.8e-15  Score=110.45  Aligned_cols=141  Identities=17%  Similarity=0.132  Sum_probs=90.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAAL   95 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~l   95 (240)
                      .+|+++|++|+|||||++++++.............+.  ....... .+  ..+.+||++|...+......  ..+|+++
T Consensus         4 ~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i   80 (173)
T d2a5ja1           4 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEF--GARMVNI-DGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL   80 (173)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSE--EEEEEEE-TTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEE
T ss_pred             EEEEEECCCCcCHHHHHHHHhcCCCCCCcccceeecc--ceeeeee-eeeEEEEEeecccCccchhhHHHHHhhccCEEE
Confidence            6899999999999999999987765444332222222  2222222 33  46789999999888776665  8999999


Q ss_pred             EEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCCcccHHHHhcccCCchHHHHHHHhCCcEEEEeCCC
Q 036363           96 VVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELEANDETLEDYLGRECPKPLKEILHLFDNRCVLFDNKT  174 (240)
Q Consensus        96 ~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (240)
                      +|++++++.+... ..++..+....+.  ..|+++|.||+|.........         .....+....+.+|+..+...
T Consensus        81 lv~d~~~~~sf~~~~~~~~~~~~~~~~--~~piilv~nK~D~~~~~~~~~---------~~~~~~a~~~~~~~~e~Sa~t  149 (173)
T d2a5ja1          81 LVYDITRRETFNHLTSWLEDARQHSSS--NMVIMLIGNKSDLESRRDVKR---------EEGEAFAREHGLIFMETSAKT  149 (173)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCGGGCCSCH---------HHHHHHHHHHTCEEEEECTTT
T ss_pred             EEEeecChHHHHhHHHHHHHHHHhCCC--CCeEEEEecCCchhhhhhhHH---------HHHHHHHHHcCCEEEEecCCC
Confidence            9999987666654 3555556554333  368999999999443221111         123344445566666655543

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=2.7e-15  Score=109.83  Aligned_cols=114  Identities=19%  Similarity=0.142  Sum_probs=77.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAAL   95 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~l   95 (240)
                      .+|+++|++|+|||||++++++........++.+   ......... ++  ..+.+|||+|...+......  ..+|+++
T Consensus         3 ~KivvvG~~~vGKTsLi~~~~~~~f~~~~~~t~~---~~~~~~~~~-~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i   78 (177)
T d1kmqa_           3 KKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF---ENYVADIEV-DGKQVELALWDTAGLEDYDRLRPLSYPDTDVIL   78 (177)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSE---EEEEEEEEE-TTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCCcCCcee---eeccccccc-cccceeeeccccCccchhcccchhhcccchhhh
Confidence            6899999999999999999987764333222111   111111222 33  36789999999988777655  8999999


Q ss_pred             EEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363           96 VVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        96 ~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~  139 (240)
                      +|+|++++.+.+. ...+..+......  ..|+++|.||+|....
T Consensus        79 lv~d~~~~~Sf~~~~~~~~~~~~~~~~--~~piilvgnK~Dl~~~  121 (177)
T d1kmqa_          79 MCFSIDSPDSLENIPEKWTPEVKHFCP--NVPIILVGNKKDLRND  121 (177)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHST--TSCEEEEEECGGGTTC
T ss_pred             hhcccchhHHHHHHHHHHHHHHHHhCC--CCceEEeeecccccch
Confidence            9999997666554 2333333333333  2679999999996543

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.58  E-value=1.3e-14  Score=104.92  Aligned_cols=144  Identities=15%  Similarity=0.072  Sum_probs=90.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCc-C--CCceEEE
Q 036363           19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSE-F--DEIHAAL   95 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~-~--~~~~~~l   95 (240)
                      ..+|+++|..|+|||||++++++...........+............ ....+.+||++|......... .  ..+|+++
T Consensus         2 ~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i   80 (165)
T d1z06a1           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDG-ERIKIQLWDTAGQERFRKSMVQHYYRNVHAVV   80 (165)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETT-EEEEEEEEECCCSHHHHTTTHHHHHTTCCEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeeec-cceEEEEEeccCchhhccccceeeecCCCceE
Confidence            47899999999999999999997665444433333333222222211 234678999999776543322 2  8999999


Q ss_pred             EEEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCCCCCcccHHHHhcccCCchHHHHHHHhCCcEEEEeCC
Q 036363           96 VVFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDELEANDETLEDYLGRECPKPLKEILHLFDNRCVLFDNK  173 (240)
Q Consensus        96 ~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (240)
                      +|+|++++.+.+.. .++..+.+..... ..|+++|.||.|.........         .....+....+.+|+..+..
T Consensus        81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~-~~pi~lvgnK~Dl~~~~~v~~---------~~~~~~~~~~~~~~~e~SAk  149 (165)
T d1z06a1          81 FVYDMTNMASFHSLPAWIEECKQHLLAN-DIPRILVGNKCDLRSAIQVPT---------DLAQKFADTHSMPLFETSAK  149 (165)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHCCCS-CCCEEEEEECTTCGGGCCSCH---------HHHHHHHHHTTCCEEECCSS
T ss_pred             EEEEeehhhhhhhhhhhhHHHHhhccCC-CCeEEEEeccccchhccchhH---------HHHHHHHHHCCCEEEEEecc
Confidence            99999977666654 4555665554432 367999999999544321111         12344555556666555443

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=8.5e-16  Score=112.26  Aligned_cols=113  Identities=18%  Similarity=0.172  Sum_probs=74.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeC--CcEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKD--GQVVNVIDTPGLFDFSAGSEF--DEIHAAL   95 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~--~~~~~~l   95 (240)
                      .+|+++|.+|+|||||++++++...........+.+.  ....... +  ...+.+|||||...+......  ..+++++
T Consensus         6 ~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~--~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (174)
T d2bmea1           6 FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEF--GSKIINV-GGKYVKLQIWDTAGQERFRSVTRSYYRGAAGAL   82 (174)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEE--EEEEEEE-TTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEE
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCcccccccccce--eeEEEEe-cCcceeEEEEECCCchhhhhhHHHHhhhCCEEE
Confidence            7899999999999999999987654333222222222  1122222 2  236789999998776554333  8899999


Q ss_pred             EEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363           96 VVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDEL  137 (240)
Q Consensus        96 ~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~  137 (240)
                      +|+|.++..+... ...+..+.....  ...|+++|.||+|..
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piivv~nK~D~~  123 (174)
T d2bmea1          83 LVYDITSRETYNALTNWLTDARMLAS--QNIVIILCGNKKDLD  123 (174)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECGGGG
T ss_pred             EEEecccchhHHHHhhhhcccccccC--CceEEEEEEeccccc
Confidence            9999986544443 344444444333  247899999999943

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=2.7e-14  Score=103.72  Aligned_cols=141  Identities=18%  Similarity=0.135  Sum_probs=83.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCc--EEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQ--VVNVIDTPGLFDFSAGSEF--DEIHAAL   95 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~--~~~~~~l   95 (240)
                      .+|+++|+.|+|||||++++++......... .............. .+.  .+.+|||||...+......  ..+|+++
T Consensus         7 fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~d~~i   84 (170)
T d2g6ba1           7 FKVMLVGDSGVGKTCLLVRFKDGAFLAGTFI-STVGIDFRNKVLDV-DGVKVKLQMWDTAGQERFRSVTHAYYRDAHALL   84 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCCCCCC-CCCSCEEEEEEEEE-TTEEEEEEEEECCCC--------CCGGGCSEEE
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCccccc-ceeeeeeEEEEEEe-cCcEEEEEEEECCCchhhHHHHHHhhcCCceeE
Confidence            6899999999999999999987654333222 22222222223333 443  6789999999888766555  8999999


Q ss_pred             EEEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCCCCCcccHHHHhcccCCchHHHHHHHhCCcEEEEeCC
Q 036363           96 VVFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDELEANDETLEDYLGRECPKPLKEILHLFDNRCVLFDNK  173 (240)
Q Consensus        96 ~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (240)
                      +|+|.+++.+.... ..+..+....+  ...++++|.||+|.........+         ....+....+.+|+..+..
T Consensus        85 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iilv~~k~d~~~~~~v~~~---------~~~~~~~~~~~~~~e~Sak  152 (170)
T d2g6ba1          85 LLYDVTNKASFDNIQAWLTEIHEYAQ--HDVALMLLGNKVDSAHERVVKRE---------DGEKLAKEYGLPFMETSAK  152 (170)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECCSTTSCCCSCHH---------HHHHHHHHHTCCEEECCTT
T ss_pred             EEecCCcccchhhhhhhhhhhhhccC--CCceEEEEEeeechhhcccccHH---------HHHHHHHHcCCEEEEEeCC
Confidence            99999865555443 33333434332  34678999999996554311211         2344555566666666544

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=2.1e-14  Score=104.14  Aligned_cols=114  Identities=21%  Similarity=0.153  Sum_probs=75.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC-CCceEEEE
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF-DEIHAALV   96 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~-~~~~~~l~   96 (240)
                      .+|+++|++|+|||||++++++........+    |....+......++  ..+.+|||+|...+...... ..++++++
T Consensus         3 iKi~lvG~~~vGKTsli~r~~~~~f~~~~~p----Ti~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~il   78 (168)
T d2atva1           3 VKLAIFGRAGVGKSALVVRFLTKRFIWEYDP----TLESTYRHQATIDDEVVSMEILDTAGQEDTIQREGHMRWGEGFVL   78 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCCCSCCCT----TCCEEEEEEEEETTEEEEEEEEECCCCCCCHHHHHHHHHCSEEEE
T ss_pred             EEEEEECCCCCCHHHHHHHHHhCCCCCccCC----ceeccccccccccccceEEEEeecccccccccchhhhccccccee
Confidence            7999999999999999999998654333222    22222222222244  36789999998765322212 78999999


Q ss_pred             EEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363           97 VFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDEL  137 (240)
Q Consensus        97 v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~  137 (240)
                      |+|++++.+......+.............|+++|.||+|..
T Consensus        79 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~  119 (168)
T d2atva1          79 VYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLD  119 (168)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGG
T ss_pred             ecccCCccchhhhhhhcccccccccccCcceeeeccchhhh
Confidence            99999776666654443333222233346899999999953

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=1.6e-15  Score=110.46  Aligned_cols=116  Identities=23%  Similarity=0.197  Sum_probs=77.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCc--EEEEEeCCCCCCCCCCCcC--CCceEE
Q 036363           19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQ--VVNVIDTPGLFDFSAGSEF--DEIHAA   94 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~--~~~~~~   94 (240)
                      ..+|+++|.+|+|||||++++++........++.+..   ....... ++.  .+.+|||+|...+......  ..+|++
T Consensus         2 ~~Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~~---~~~~~~~-~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~   77 (171)
T d2erxa1           2 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDT---YRQVISC-DKSICTLQITDTTGSHQFPAMQRLSISKGHAF   77 (171)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEE---EEEEEEE-TTEEEEEEEEECCSCSSCHHHHHHHHHHCSEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCCccCcceeec---cccceee-ccccceeccccccccccccccccccccceeEE
Confidence            4799999999999999999999876433222222211   1112222 443  5678999998877554443  888999


Q ss_pred             EEEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           95 LVVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        95 l~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      ++|+|++++-+... ..++..+.+..+.....|+++|.||+|...
T Consensus        78 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~  122 (171)
T d2erxa1          78 ILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESP  122 (171)
T ss_dssp             EEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGG
T ss_pred             EEEeecccccchhcccchhhhhhhhhccCCCCcEEEEeecccccc
Confidence            99999986655554 455555655555444568999999999543

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.57  E-value=4.5e-15  Score=107.64  Aligned_cols=114  Identities=18%  Similarity=0.111  Sum_probs=76.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEE
Q 036363           19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAA   94 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~   94 (240)
                      ..+|+++|.+|+|||||++++++.........+.+.+..  ...... +.  ..+.+|||+|...+......  ..+|++
T Consensus         4 ~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~--~~~~~~-~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~   80 (167)
T d1z0ja1           4 ELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFM--TKTVQY-QNELHKFLIWDTAGLERFRALAPMYYRGSAAA   80 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEE--EEEEEE-TTEEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred             eeEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccc--cccccc-cccccceeeeecCCchhhhHHHHHHHhhccce
Confidence            378999999999999999999976643332222222211  112222 32  25679999998887665555  899999


Q ss_pred             EEEEECCCCCCHHHHHH-HHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363           95 LVVFSVRSRFSQEEEAT-LHSLQTLFGKNCFDYMIVVFSGRDEL  137 (240)
Q Consensus        95 l~v~~~~~~~~~~~~~~-l~~l~~~~~~~~~~~~i~v~~~~D~~  137 (240)
                      ++|+|++++-+...... +..+.....  ...|+++|+||+|..
T Consensus        81 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iilvgnK~Dl~  122 (167)
T d1z0ja1          81 IIVYDITKEETFSTLKNWVRELRQHGP--PSIVVAIAGNKCDLT  122 (167)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHSC--TTSEEEEEEECTTCG
T ss_pred             EEEeeechhhhhhhHHHhhhhhhhccC--CcceEEEecccchhc
Confidence            99999986655555433 333333332  347899999999954

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.57  E-value=7.8e-16  Score=113.03  Aligned_cols=114  Identities=18%  Similarity=0.251  Sum_probs=77.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccC-----CCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCce
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRA-----SSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIH   92 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~-----~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~   92 (240)
                      .+|+++|++++|||||+|+|++........     ...+.+.........+ .+..+.++|+||+.++......  ...|
T Consensus         6 inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~d~~g~~~~~~~~~~~l~~~d   84 (179)
T d1wb1a4           6 INLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKL-ENYRITLVDAPGHADLIRAVVSAADIID   84 (179)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEE-TTEEEEECCCSSHHHHHHHHHHHTTSCC
T ss_pred             EEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeecccccccccc-CCccccccccccccccccchhhhhhhcc
Confidence            689999999999999999999754321111     1123333333344445 7788999999998765433222  7889


Q ss_pred             EEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363           93 AALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        93 ~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~  139 (240)
                      ++++|+++..+...++...+..+...     ..|+++|+||+|....
T Consensus        85 ~~ilv~d~~~g~~~~~~~~~~~~~~~-----~~p~iiv~NKiD~~~~  126 (179)
T d1wb1a4          85 LALIVVDAKEGPKTQTGEHMLILDHF-----NIPIIVVITKSDNAGT  126 (179)
T ss_dssp             EEEEEEETTTCSCHHHHHHHHHHHHT-----TCCBCEEEECTTSSCH
T ss_pred             ccccccccccccchhhhhhhhhhhhc-----CCcceeccccccccCH
Confidence            99999999988888887777666432     2468999999997654

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.57  E-value=1.1e-14  Score=105.87  Aligned_cols=141  Identities=23%  Similarity=0.218  Sum_probs=93.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEE
Q 036363           19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAA   94 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~   94 (240)
                      ..+|+++|..|+|||||++++++........+..+...   ...... ++  ..+.+||++|...+......  +++|++
T Consensus         4 t~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~---~~~~~~-~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~   79 (169)
T d1x1ra1           4 TYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSY---LKHTEI-DNQWAILDVLDTAGQEEFSAMREQYMRTGDGF   79 (169)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCEEE---EEEEEE-TTEEEEEEEEECCSCGGGCSSHHHHHHHCSEE
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeecc---cccccc-ccccccccccccccccccccchhhhhhhccEE
Confidence            48999999999999999999987654333222221111   112223 33  36679999999888766554  889999


Q ss_pred             EEEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCCcccHHHHhcccCCchHHHHHHHhCCcEEEEeCC
Q 036363           95 LVVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELEANDETLEDYLGRECPKPLKEILHLFDNRCVLFDNK  173 (240)
Q Consensus        95 l~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (240)
                      ++|++++++-+... ..++..+.+..+. ...|++++.||+|.........         .....+....+.+|+..+..
T Consensus        80 llv~d~~d~~Sf~~~~~~~~~i~~~~~~-~~~p~ilvgnK~Dl~~~~~v~~---------e~~~~~~~~~~~~~~e~Sak  149 (169)
T d1x1ra1          80 LIVYSVTDKASFEHVDRFHQLILRVKDR-ESFPMILVANKVDLMHLRKVTR---------DQGKEMATKYNIPYIETSAK  149 (169)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHTS-SCCCEEEEEECTTCSTTCCSCH---------HHHHHHHHHHTCCEEEEBCS
T ss_pred             EEecccccchhhhccchhhHHHHhhccc-cCccEEEEecccchhhhceeeh---------hhHHHHHHHcCCEEEEEcCC
Confidence            99999997766665 3555666655543 2367899999999654431111         12345556666777777654

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=7.9e-15  Score=108.12  Aligned_cols=115  Identities=15%  Similarity=0.072  Sum_probs=78.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceE
Q 036363           18 GVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHA   93 (240)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~   93 (240)
                      ...+|+++|..|+|||||+++++..........+.+..   ....... .+  ..+.+|||+|...+......  ..+|+
T Consensus         8 ~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~Ti~~~---~~~~~~~-~~~~~~l~i~D~~g~e~~~~~~~~~~~~a~~   83 (185)
T d2atxa1           8 LMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDH---YAVSVTV-GGKQYLLGLYDTAGQEDYDRLRPLSYPMTDV   83 (185)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCC---EEEEEES-SSCEEEEEEECCCCSSSSTTTGGGGCTTCSE
T ss_pred             cEEEEEEECCCCCCHHHHHHHHhhCCCCCcCCCceeee---eeEEEee-CCceEEeecccccccchhhhhhhhcccccce
Confidence            45799999999999999999998765433222222111   1122222 33  35689999999888776655  89999


Q ss_pred             EEEEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           94 ALVVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        94 ~l~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      +++|+|++++.+.+. ...+....+....  ..|+++|.||+|...
T Consensus        84 ~ilv~d~t~~~Sf~~~~~~~~~~~~~~~~--~~~~ilvgnK~Dl~~  127 (185)
T d2atxa1          84 FLICFSVVNPASFQNVKEEWVPELKEYAP--NVPFLLIGTQIDLRD  127 (185)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHST--TCCEEEEEECTTSTT
T ss_pred             eeeccccchHHHHHHHHHHHHHHHHhcCC--CCCeeEeeecccccc
Confidence            999999997666654 3344444443333  257899999999544

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.55  E-value=8.3e-15  Score=106.47  Aligned_cols=114  Identities=20%  Similarity=0.207  Sum_probs=78.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAAL   95 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~l   95 (240)
                      .+|+++|..|+|||||++++++...........+....  ...... .+  ..+.+|||+|...+......  ..+|+++
T Consensus         4 iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~--~~~i~~-~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~i   80 (170)
T d1ek0a_           4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFL--TQRVTI-NEHTVKFEIWDTAGQERFASLAPMYYRNAQAAL   80 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEE--EEEEEE-TTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCccccccccceee--cccccc-ccccccccccccCCchhHHHHHHHHHhccceEE
Confidence            79999999999999999999987654443332332222  222333 33  36789999998876555443  8999999


Q ss_pred             EEEECCCCCCHHHHHHH-HHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           96 VVFSVRSRFSQEEEATL-HSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        96 ~v~~~~~~~~~~~~~~l-~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      +|+|.+++.+......+ ..+...  .....+++++.||+|...
T Consensus        81 lv~d~~~~~s~~~~~~~~~~~~~~--~~~~~~~~~v~nk~d~~~  122 (170)
T d1ek0a_          81 VVYDVTKPQSFIKARHWVKELHEQ--ASKDIIIALVGNKIDMLQ  122 (170)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHH--SCTTCEEEEEEECGGGGG
T ss_pred             EEEeCCcccchhhhhhhhhhhccc--cccccceeeeeccccccc
Confidence            99999976666654333 333333  223478999999999543

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=6.3e-15  Score=107.13  Aligned_cols=114  Identities=18%  Similarity=0.165  Sum_probs=77.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAAL   95 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~l   95 (240)
                      .+|+++|..|+|||||++++++...........+.+.  ....... ..  ..+.+|||||...+......  ..+++++
T Consensus         7 ~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~--~~~~~~~-~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   83 (170)
T d1r2qa_           7 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAF--LTQTVCL-DDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAI   83 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEE--EEEEEEE-TTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCccccccccccc--ccceeec-cceEEEEEeccCCCchhhhhhHHHHhhCcceEE
Confidence            6899999999999999999997654433333222222  2122222 32  36789999999877655544  8999999


Q ss_pred             EEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           96 VVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        96 ~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      +|+|.++..+... ..++..+......  ..|+++|.||+|...
T Consensus        84 lv~d~~~~~s~~~~~~~~~~~~~~~~~--~~~iilvgnK~Dl~~  125 (170)
T d1r2qa_          84 VVYDITNEESFARAKNWVKELQRQASP--NIVIALSGNKADLAN  125 (170)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHSCT--TCEEEEEEECGGGGG
T ss_pred             EEeccchhhHHHHHHHHhhhhhhccCC--CceEEeecccccccc
Confidence            9999986655554 3444445444333  368999999999543

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=5e-15  Score=107.36  Aligned_cols=115  Identities=17%  Similarity=0.151  Sum_probs=76.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEE
Q 036363           19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAA   94 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~   94 (240)
                      ..+|+++|.+|+|||||++++++........+..+.   ........ ++  ..+.+||++|...+......  ..+|++
T Consensus         3 ~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~---~~~~~~~~-~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~   78 (167)
T d1kaoa_           3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIED---FYRKEIEV-DSSPSVLEILDTAGTEQFASMRDLYIKNGQGF   78 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCE---EEEEEEEE-TTEEEEEEEEECCCTTCCHHHHHHHHHHCSEE
T ss_pred             eeEEEEECCCCcCHHHHHHHHHhCCCCCccCCceee---eeeeeeec-CcceEeeccccCCCccccccchHHHhhcccce
Confidence            379999999999999999999987644333222221   11122222 33  36678999997766544333  789999


Q ss_pred             EEEEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           95 LVVFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        95 l~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      ++|++++++.+.... .++..+..... ....|+++|.||+|...
T Consensus        79 ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilvgnK~Dl~~  122 (167)
T d1kaoa_          79 ILVYSLVNQQSFQDIKPMRDQIIRVKR-YEKVPVILVGNKVDLES  122 (167)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHTT-TSCCCEEEEEECGGGGG
T ss_pred             eeeeeecchhhhhhhhchhhhhhhhcc-CCCCCEEEEEEccchhh
Confidence            999999976666653 33334443322 23357999999999543

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.54  E-value=3.6e-14  Score=103.36  Aligned_cols=113  Identities=12%  Similarity=0.086  Sum_probs=77.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEEEE
Q 036363           19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAALV   96 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~   96 (240)
                      ..+|+++|++|||||||++++++......     ..|.......... ....+.+||+||..........  ..++++++
T Consensus        12 ~~kIvlvG~~~vGKTSli~rl~~~~~~~~-----~~t~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ii~   85 (173)
T d1e0sa_          12 EMRILMLGLDAAGKTTILYKLKLGQSVTT-----IPTVGFNVETVTY-KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF   85 (173)
T ss_dssp             CEEEEEEEETTSSHHHHHHHTTCCCCEEE-----EEETTEEEEEEEE-TTEEEEEEEESCCGGGHHHHGGGTTTCCEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCc-----cceeeeeEEEeec-cceeeEEecCCCcchhhhHHHhhhcccceEEE
Confidence            38999999999999999999987654322     1233333344444 6778999999998877655444  89999999


Q ss_pred             EEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           97 VFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        97 v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      |+|+++..+... ...+....... .....|+++|+||+|...
T Consensus        86 v~D~s~~~~~~~~~~~l~~~~~~~-~~~~~piiiv~NK~Dl~~  127 (173)
T d1e0sa_          86 VVDCADRDRIDEARQELHRIINDR-EMRDAIILIFANKQDLPD  127 (173)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTSG-GGTTCEEEEEEECTTSTT
T ss_pred             EEecccchhHHHHHHHHHHHhhhc-ccccceeeeeeecccccc
Confidence            999986555543 23333332211 122378999999999543

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=4.3e-15  Score=107.62  Aligned_cols=113  Identities=21%  Similarity=0.230  Sum_probs=77.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAAL   95 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~l   95 (240)
                      .+|+++|++|||||||++++++...........+.....   .... .+  ..+.+||+||...+......  ..+++++
T Consensus         4 ~Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~i   79 (166)
T d1ctqa_           4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRK---QVVI-DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL   79 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEE---EEEE-TTEEEEEEEEEECCCGGGHHHHHHHHHHCSEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCccCCccceeecc---ceee-eceeeeeeeeeccCccccccchhhhhhcccccc
Confidence            789999999999999999999876443322222222111   1122 33  35789999998887554433  8899999


Q ss_pred             EEEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363           96 VVFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDEL  137 (240)
Q Consensus        96 ~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~  137 (240)
                      +|++.+++.+.+.. .++..+....+.. ..|+++|.||+|..
T Consensus        80 iv~d~~~~~s~~~~~~~~~~i~~~~~~~-~~piilv~nK~Dl~  121 (166)
T d1ctqa_          80 CVFAINNTKSFEDIHQYREQIKRVKDSD-DVPMVLVGNKCDLA  121 (166)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHTCS-SCCEEEEEECTTCS
T ss_pred             eeecccccccHHHHHHHHHHHHHhcCCC-CCeEEEEecccccc
Confidence            99999976666553 4445555544432 35799999999954

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.54  E-value=7.6e-15  Score=112.12  Aligned_cols=136  Identities=18%  Similarity=0.268  Sum_probs=90.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHh---CCCCcc------------cc--------------CCCCCcceeEEEEEEEEeCCc
Q 036363           19 VRTVVLVGHTGNGKSATGNSIL---GRRAFK------------SR--------------ASSSGVTSTCEMHRTVLKDGQ   69 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~---g~~~~~------------~~--------------~~~~~~t~~~~~~~~~~~~~~   69 (240)
                      ..+|+++|+.++|||||+.+|+   |.....            .+              ....+.|.......+.+ .++
T Consensus         6 ~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~-~~~   84 (239)
T d1f60a3           6 HINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFET-PKY   84 (239)
T ss_dssp             EEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEEC-SSE
T ss_pred             ccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEecc-CCE
Confidence            4799999999999999999985   221100            00              01236677777777788 889


Q ss_pred             EEEEEeCCCCCCCCCCCcC--CCceEEEEEEECCCC-------CCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCC
Q 036363           70 VVNVIDTPGLFDFSAGSEF--DEIHAALVVFSVRSR-------FSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEAN  140 (240)
Q Consensus        70 ~~~l~DtpG~~~~~~~~~~--~~~~~~l~v~~~~~~-------~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~  140 (240)
                      .++++||||+.+|......  ..+|++++|+++..+       ...+.+..+..+. .+|   .+++|+++||+|....+
T Consensus        85 ~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~~~-~~g---v~~iiv~iNKmD~~~~d  160 (239)
T d1f60a3          85 QVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAF-TLG---VRQLIVAVNKMDSVKWD  160 (239)
T ss_dssp             EEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHH-HTT---CCEEEEEEECGGGGTTC
T ss_pred             EEEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHHHHHH-HcC---CCeEEEEEECCCCCCCC
Confidence            9999999999999654433  889999999999743       2234444443333 333   36789999999977655


Q ss_pred             cccHHHHhcccCCchHHHHHHHhC
Q 036363          141 DETLEDYLGRECPKPLKEILHLFD  164 (240)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~  164 (240)
                      ...+++....     +..++...+
T Consensus       161 ~~~~~~~~~e-----l~~~l~~~~  179 (239)
T d1f60a3         161 ESRFQEIVKE-----TSNFIKKVG  179 (239)
T ss_dssp             HHHHHHHHHH-----HHHHHHHHT
T ss_pred             HHHHHHHHHH-----HHHHHHhcC
Confidence            3333433333     455555444

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.53  E-value=4.8e-15  Score=109.23  Aligned_cols=117  Identities=17%  Similarity=0.110  Sum_probs=72.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC---------CC
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF---------DE   90 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~---------~~   90 (240)
                      ..|+|+|++|||||||+|+|+|.......  ..+.|.........+.++..+.+|||||+.........         ..
T Consensus         2 ~~VaiiG~~nvGKSSLin~L~~~~~~~~~--~~~~T~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~   79 (185)
T d1lnza2           2 ADVGLVGFPSVGKSTLLSVVSSAKPKIAD--YHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIER   79 (185)
T ss_dssp             CCEEEESSTTSSHHHHHHHSEEECCEESS--TTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHhCCCCceec--CCCceEeeeeceeEecCCcEEEEecCCCcccCchHHHHHHHHHHHHHHH
Confidence            36999999999999999999987653332  23445544444455545678899999997543322211         45


Q ss_pred             ceEEEEEEECC--CCCCHHHH-HHHHHHHHHhCC-CcCCeEEEEEeCCCCCC
Q 036363           91 IHAALVVFSVR--SRFSQEEE-ATLHSLQTLFGK-NCFDYMIVVFSGRDELE  138 (240)
Q Consensus        91 ~~~~l~v~~~~--~~~~~~~~-~~l~~l~~~~~~-~~~~~~i~v~~~~D~~~  138 (240)
                      ++.++++++..  ......+. ............ ....|+++|+||+|...
T Consensus        80 ~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~  131 (185)
T d1lnza2          80 TRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPE  131 (185)
T ss_dssp             CCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTT
T ss_pred             hhhhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHh
Confidence            67777777665  23333332 222222222222 22367899999999654

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=2.1e-14  Score=104.39  Aligned_cols=140  Identities=21%  Similarity=0.178  Sum_probs=84.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCc--EEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQ--VVNVIDTPGLFDFSAGSEF--DEIHAAL   95 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~--~~~~~~l   95 (240)
                      .+|+|+|.+|+|||||++++++........+..+   ......... ++.  .+.+|||+|...+......  ..+|+++
T Consensus         6 ~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~---~~~~~~~~~-~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   81 (171)
T d2erya1           6 YRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE---DSYTKQCVI-DDRAARLDILDTAGQEEFGAMREQYMRTGEGFL   81 (171)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCC---EEEEEEEEE-TTEEEEEEEEECC----CCHHHHHHHHHCSEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCcccc---cceeeeeee-cccccccccccccccccccccccccccccceEE
Confidence            7999999999999999999987654333222222   122222333 443  6789999999887655444  8899999


Q ss_pred             EEEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCCCCCcccHHHHhcccCCchHHHHHHHhCCcEEEEeCC
Q 036363           96 VVFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDELEANDETLEDYLGRECPKPLKEILHLFDNRCVLFDNK  173 (240)
Q Consensus        96 ~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (240)
                      +|+|.+++.+.... .++..+....+.. ..|+++|.||+|.........         .....+....+.+|+..+..
T Consensus        82 lv~d~~~~~s~~~~~~~~~~~~~~~~~~-~~p~ilvgnK~Dl~~~~~v~~---------~~~~~~~~~~~~~~~e~Sak  150 (171)
T d2erya1          82 LVFSVTDRGSFEEIYKFQRQILRVKDRD-EFPMILIGNKADLDHQRQVTQ---------EEGQQLARQLKVTYMEASAK  150 (171)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHTSS-CCSEEEEEECTTCTTSCSSCH---------HHHHHHHHHTTCEEEECBTT
T ss_pred             EeeccccccchhhHHHHhHHHHhhcccC-CCCEEEEEeccchhhhccchH---------HHHHHHHHHcCCEEEEEcCC
Confidence            99999866555543 4444455444433 356899999999543321111         12344555556666554543

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=4.4e-14  Score=102.27  Aligned_cols=116  Identities=16%  Similarity=0.128  Sum_probs=78.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEE-eCCcEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363           19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVL-KDGQVVNVIDTPGLFDFSAGSEF--DEIHAAL   95 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l   95 (240)
                      ..+|++||..|+|||||++++++........+..+...   ...... .....+.+||++|...+......  ..+|+++
T Consensus         3 ~~KivvvG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~---~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   79 (167)
T d1c1ya_           3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY---RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFA   79 (167)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE---EEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCCCccCCcccccc---ceeEEeeeeEEEeccccccCcccccccccccccccceeE
Confidence            37899999999999999999987764333222221111   111222 12336789999999888766544  8899999


Q ss_pred             EEEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           96 VVFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        96 ~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      +|+|++++.+.+.. .++..+.+..+. ...|+++|.||+|...
T Consensus        80 lv~d~~~~~sf~~~~~~~~~~~~~~~~-~~~p~ilvgnK~Dl~~  122 (167)
T d1c1ya_          80 LVYSITAQSTFNDLQDLREQILRVKDT-EDVPMILVGNKCDLED  122 (167)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHCC-SCCCEEEEEECTTCGG
T ss_pred             EeeeccchhhhHhHHHHHHHHHHhcCC-CCCeEEEEEEecCccc
Confidence            99999977666653 455555554433 2357999999999543

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=1.3e-14  Score=106.92  Aligned_cols=142  Identities=13%  Similarity=0.078  Sum_probs=84.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEe-----------CCcEEEEEeCCCCCCCCCCCcC
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLK-----------DGQVVNVIDTPGLFDFSAGSEF   88 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-----------~~~~~~l~DtpG~~~~~~~~~~   88 (240)
                      .+|+++|++|+|||||++++++...........  +...........           ....+.+|||||...+......
T Consensus         6 ~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e~~~~~~~~   83 (186)
T d2f7sa1           6 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTV--GIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTA   83 (186)
T ss_dssp             EEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEE--EEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHhcCCCCCccCCcc--cceeeEEEEEEecccccccccccceEEeccccCCcchhhHHHHHH
Confidence            689999999999999999999866433221111  111111111110           1236789999998766544433


Q ss_pred             --CCceEEEEEEECCCCCCHHHHHHHHHHHHHhC--CCcCCeEEEEEeCCCCCCCCcccHHHHhcccCCchHHHHHHHhC
Q 036363           89 --DEIHAALVVFSVRSRFSQEEEATLHSLQTLFG--KNCFDYMIVVFSGRDELEANDETLEDYLGRECPKPLKEILHLFD  164 (240)
Q Consensus        89 --~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~--~~~~~~~i~v~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (240)
                        .++|++++|+|++++.+.+...  .++.....  ....+|+++|.||.|.......         .......+....+
T Consensus        84 ~~~~~~~~i~v~d~~~~~s~~~~~--~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~v---------~~~e~~~~~~~~~  152 (186)
T d2f7sa1          84 FFRDAMGFLLMFDLTSQQSFLNVR--NWMSQLQANAYCENPDIVLIGNKADLPDQREV---------NERQARELADKYG  152 (186)
T ss_dssp             HHTTCCEEEEEEETTCHHHHHHHH--HHHHTCCCCCTTTCCEEEEEEECTTCGGGCCS---------CHHHHHHHHHHTT
T ss_pred             HHhcCCEEEEEEeccccccceeee--eccchhhhhccCCCceEEEEeeeccchhhhcc---------hHHHHHHHHHHcC
Confidence              7899999999998544443322  22222221  2234678999999995432200         1122455666667


Q ss_pred             CcEEEEeCCC
Q 036363          165 NRCVLFDNKT  174 (240)
Q Consensus       165 ~~~~~~~~~~  174 (240)
                      .+|+..+...
T Consensus       153 ~~~~e~Sak~  162 (186)
T d2f7sa1         153 IPYFETSAAT  162 (186)
T ss_dssp             CCEEEEBTTT
T ss_pred             CEEEEEeCCC
Confidence            7777666553

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=2.1e-14  Score=106.32  Aligned_cols=113  Identities=19%  Similarity=0.100  Sum_probs=77.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAAL   95 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~l   95 (240)
                      .+|+++|+.|+|||||++++++........++.+   ......... .+  ..+.+|||+|...+......  ..+|+++
T Consensus         4 iKvvllG~~~vGKTSli~r~~~~~f~~~~~~t~~---~~~~~~~~~-~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i   79 (191)
T d2ngra_           4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVF---DNYAVTVMI-GGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL   79 (191)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSE---EEEEEEEEE-TTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred             eEEEEECCCCcCHHHHHHHHHhCCCCCCcCCcee---eecceeEee-CCceeeeeccccccchhhhhhhhhcccccceee
Confidence            7899999999999999999987664333222111   111122222 33  36789999999988766655  8999999


Q ss_pred             EEEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           96 VVFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        96 ~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      +|+|++++.|.+.. ..+.........  ..|+++|.||+|...
T Consensus        80 lv~d~~~~~Sf~~~~~~~~~~~~~~~~--~~~i~lvgnK~Dl~~  121 (191)
T d2ngra_          80 VCFSVVSPSSFENVKEKWVPEITHHCP--KTPFLLVGTQIDLRD  121 (191)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHCT--TCCEEEEEECGGGGG
T ss_pred             cccccchHHHHHHHHHHHHHHHhhcCC--CCceEEEeccccccc
Confidence            99999977766654 334444333332  367999999999543

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.52  E-value=2.4e-14  Score=104.91  Aligned_cols=112  Identities=15%  Similarity=0.081  Sum_probs=76.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAAL   95 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~l   95 (240)
                      .+|+++|.+|+|||||+++++....+....+..+   ......... ++  ..+.+||++|...+......  ..+|+++
T Consensus         3 ~KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~---~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   78 (179)
T d1m7ba_           3 CKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVF---ENYTASFEI-DTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL   78 (179)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSE---EEEEEEEEC-SSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred             eEEEEECCCCcCHHHHHHHHHhCCCCCccCCcee---ecccccccc-cceEEeeccccccccccccccccchhhhhhhhh
Confidence            5899999999999999999987664333222111   122222233 33  35679999999877666554  8999999


Q ss_pred             EEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363           96 VVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDEL  137 (240)
Q Consensus        96 ~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~  137 (240)
                      +|+|++++-|.+. ...+.........  ..|+++|.||+|..
T Consensus        79 lv~d~~~~~Sf~~~~~~~~~~~~~~~~--~~~iilVgnK~Dl~  119 (179)
T d1m7ba_          79 ICFDISRPETLDSVLKKWKGEIQEFCP--NTKMLLVGCKSDLR  119 (179)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHCT--TCEEEEEEECGGGG
T ss_pred             eeeecccCCCHHHHHHHHHHHHhccCC--cceEEEEEeccccc
Confidence            9999997666554 3344444444333  36899999999954

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=99.52  E-value=1.6e-14  Score=104.78  Aligned_cols=114  Identities=21%  Similarity=0.220  Sum_probs=74.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCc--EEEEEeCCCCCCCCCCCcC--CCceEE
Q 036363           19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQ--VVNVIDTPGLFDFSAGSEF--DEIHAA   94 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~--~~~~~~   94 (240)
                      ..+|+++|..|+|||||++++++........++.+....   ..... ++.  .+.+||+||...+......  ..+|++
T Consensus         4 ~~KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~~---~~~~~-~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~   79 (168)
T d1u8za_           4 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR---KKVVL-DGEEVQIDILDTAGQEDYAAIRDNYFRSGEGF   79 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEE---EEEEE-TTEEEEEEEEECCC---CHHHHHHHHHHCSEE
T ss_pred             eeEEEEECCCCcCHHHHHHHHHhCCCCcccCCccccccc---ccccc-ccccccccccccccccchhhhhhhccccccee
Confidence            379999999999999999999876543332222222111   12223 443  6678999999876543333  789999


Q ss_pred             EEEEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363           95 LVVFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDEL  137 (240)
Q Consensus        95 l~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~  137 (240)
                      ++|++.++..+.... .++..+.+..+. ...|+++|.||+|..
T Consensus        80 ilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piiivgnK~Dl~  122 (168)
T d1u8za_          80 LCVFSITEMESFAATADFREQILRVKED-ENVPFLLVGNKSDLE  122 (168)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHHCC-TTSCEEEEEECGGGG
T ss_pred             EEEeeccchhhhhhHHHHHHHHHHhhCC-CCCcEEEEecccccc
Confidence            999999876666553 455556554433 235799999999943

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=4.5e-14  Score=103.79  Aligned_cols=114  Identities=19%  Similarity=0.093  Sum_probs=77.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEEE
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAAL   95 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~l   95 (240)
                      .+|+++|.+|+|||||++++++........++.+..   ....... ++  ..+.+||++|...+......  ..+|+++
T Consensus         6 iKivviG~~~vGKTsli~~~~~~~f~~~~~~ti~~~---~~~~~~~-~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   81 (183)
T d1mh1a_           6 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDN---YSANVMV-DGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL   81 (183)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCE---EEEEEEE-TTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred             EEEEEECCCCCCHHHHHHHHHhCCCCcccccceeec---eeeeeec-cCcceEEEeecccccccchhhhhhcccccceee
Confidence            899999999999999999999876443323222211   1122222 33  35679999999888777665  8999999


Q ss_pred             EEEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363           96 VVFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        96 ~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~  139 (240)
                      +|+|++++.+.+.. ..+.........  ..|+++|.||+|...+
T Consensus        82 lv~d~~~~~sf~~i~~~~~~~~~~~~~--~~piilvgnK~Dl~~~  124 (183)
T d1mh1a_          82 ICFSLVSPASFENVRAKWYPEVRHHCP--NTPIILVGTKLDLRDD  124 (183)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHST--TSCEEEEEECHHHHTC
T ss_pred             eeeccchHHHHHHHHHHHHHHHHHhCC--CCcEEEEeecccchhh
Confidence            99999976666553 223333333332  3579999999995443

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=2.7e-14  Score=104.08  Aligned_cols=116  Identities=19%  Similarity=0.123  Sum_probs=74.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC--cEEEEEeCCCCCCCCCCCcC--CCceEE
Q 036363           19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG--QVVNVIDTPGLFDFSAGSEF--DEIHAA   94 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~--~~~~~~   94 (240)
                      ..+|+++|.+|+|||||++++++.........+.+.  ......... .+  ..+.+||++|..........  ..++++
T Consensus         6 ~~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~--~~~~~~~~~-~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~   82 (174)
T d1wmsa_           6 LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGV--EFLNKDLEV-DGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC   82 (174)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSE--EEEEEEEEE-TTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhCCCCCccccceee--eeeeeeeee-cCceeeEeeecccCcceehhhhhhhhhccceE
Confidence            468999999999999999999876543332222222  222222233 33  35679999997665443333  889999


Q ss_pred             EEEEECCCCCCHHH-HHHHHHHHHHhCC--CcCCeEEEEEeCCCCC
Q 036363           95 LVVFSVRSRFSQEE-EATLHSLQTLFGK--NCFDYMIVVFSGRDEL  137 (240)
Q Consensus        95 l~v~~~~~~~~~~~-~~~l~~l~~~~~~--~~~~~~i~v~~~~D~~  137 (240)
                      +++++.+++.+... ..+++.+......  ....|+++|.||+|..
T Consensus        83 i~~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~  128 (174)
T d1wmsa_          83 LLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS  128 (174)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS
T ss_pred             EEEEeeecccccchhhhHHHHHHHHhccccCCCceEEEeccccchh
Confidence            99999986655554 3344455544432  1235799999999953

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.48  E-value=5.8e-13  Score=96.91  Aligned_cols=115  Identities=12%  Similarity=0.078  Sum_probs=75.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEEEE
Q 036363           19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAALV   96 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~   96 (240)
                      ..+|+++|.+|||||||+++|.+......... .+.+    ...... .+..+.++|++|..........  ...+++++
T Consensus        15 ~~kI~vvG~~~~GKSsLi~rl~~~~~~~~~~~-~~~~----~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~i~   88 (177)
T d1zj6a1          15 EHKVIIVGLDNAGKTTILYQFSMNEVVHTSPT-IGSN----VEEIVI-NNTRFLMWDIGGQESLRSSWNTYYTNTEFVIV   88 (177)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTTSCEEEECC-SCSS----CEEEEE-TTEEEEEEECCC----CGGGHHHHTTCCEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCccccc-ccee----EEEEee-cceEEEEeccccccccccchhhhhccceeeee
Confidence            38999999999999999999999775433221 1111    122233 6778899999998776554444  88999999


Q ss_pred             EEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363           97 VFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        97 v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~  139 (240)
                      +++.++..+....................|+++|+||+|....
T Consensus        89 v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~  131 (177)
T d1zj6a1          89 VVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC  131 (177)
T ss_dssp             EEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTC
T ss_pred             ecccccccchhhhhhhhhhhhhcccccceEEEEEEEccccccc
Confidence            9999866666553332222222223345789999999995433

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.48  E-value=2.4e-14  Score=107.26  Aligned_cols=113  Identities=12%  Similarity=0.115  Sum_probs=70.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC------CCceE
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF------DEIHA   93 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~------~~~~~   93 (240)
                      .+|+|+|++|||||||+|+|++.....      ++|.......... ++..+.+|||||..........      ...+.
T Consensus         4 p~V~lvG~~n~GKTSLln~l~~~~~~~------~tt~~~~~~~~~~-~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~~~~   76 (209)
T d1nrjb_           4 PSIIIAGPQNSGKTSLLTLLTTDSVRP------TVVSQEPLSAADY-DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKG   76 (209)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHSSCCC------BCCCSSCEEETTG-GGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCC------eEEecceEEEEEe-CCeEEEEEecccccchhhHHHHHHHHHhhhccc
Confidence            699999999999999999999875421      2222222222333 6678899999998765433222      56688


Q ss_pred             EEEEEECCC-CCCH-HHHHHHHHHHHHhC--CCcCCeEEEEEeCCCCCCC
Q 036363           94 ALVVFSVRS-RFSQ-EEEATLHSLQTLFG--KNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        94 ~l~v~~~~~-~~~~-~~~~~l~~l~~~~~--~~~~~~~i~v~~~~D~~~~  139 (240)
                      +++++++.. ..+. .....+..+...+.  .....|+++|+||+|....
T Consensus        77 ~i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~~  126 (209)
T d1nrjb_          77 LIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA  126 (209)
T ss_dssp             EEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred             cceEEEEecccccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeeccccc
Confidence            888888763 2222 22233322221111  2234679999999997654

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.48  E-value=4.1e-14  Score=112.96  Aligned_cols=116  Identities=24%  Similarity=0.309  Sum_probs=83.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCCccc--------------cCCCCCcceeEEEEEEEEe---------------C
Q 036363           17 NGVRTVVLVGHTGNGKSATGNSILGRRAFKS--------------RASSSGVTSTCEMHRTVLK---------------D   67 (240)
Q Consensus        17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~--------------~~~~~~~t~~~~~~~~~~~---------------~   67 (240)
                      ...++|+++|+.++|||||+.+|+.......              .....+.|......+..+.               +
T Consensus        15 ~~IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~~~~   94 (341)
T d1n0ua2          15 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN   94 (341)
T ss_dssp             GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred             ccCcEEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhcccccc
Confidence            3457899999999999999999962111000              0111234444443433331               2


Q ss_pred             CcEEEEEeCCCCCCCCCCCcC--CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363           68 GQVVNVIDTPGLFDFSAGSEF--DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDEL  137 (240)
Q Consensus        68 ~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~  137 (240)
                      +..++++||||+.+|......  +.+|++++|+|+..+...+....++.+...     ..|+++++||+|.+
T Consensus        95 ~~~inliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~qT~~~~~~a~~~-----~~p~i~viNKiDr~  161 (341)
T d1n0ua2          95 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGE-----RIKPVVVINKVDRA  161 (341)
T ss_dssp             EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHT-----TCEEEEEEECHHHH
T ss_pred             ceEEEEEcCCCcHHHHHHHHHHHhhcCceEEEEecccCcchhHHHHHHHHHHc-----CCCeEEEEECcccc
Confidence            346899999999999877665  889999999999999999999999888642     25789999999965

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.45  E-value=1e-13  Score=102.87  Aligned_cols=118  Identities=17%  Similarity=0.249  Sum_probs=74.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccc-cCCCCCcceeEEEEEEEEe----------------------CCcEEEEE
Q 036363           18 GVRTVVLVGHTGNGKSATGNSILGRRAFKS-RASSSGVTSTCEMHRTVLK----------------------DGQVVNVI   74 (240)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~-~~~~~~~t~~~~~~~~~~~----------------------~~~~~~l~   74 (240)
                      +..+|+++|+.++|||||+|+|+|...... .....+.|....+....+.                      ....+.++
T Consensus         4 ~~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   83 (195)
T d1kk1a3           4 AEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFI   83 (195)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEE
T ss_pred             CcEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEeee
Confidence            347899999999999999999998532111 1111222222221111110                      12357899


Q ss_pred             eCCCCCCCCCCCcC--CCceEEEEEEECCCCC-CHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363           75 DTPGLFDFSAGSEF--DEIHAALVVFSVRSRF-SQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        75 DtpG~~~~~~~~~~--~~~~~~l~v~~~~~~~-~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~  139 (240)
                      ||||+.++......  ..+|++++|+++..+. .....+.+..+.. ++.   +++++++||+|....
T Consensus        84 DtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~-~~~---~~iiv~inK~D~~d~  147 (195)
T d1kk1a3          84 DAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQI-IGQ---KNIIIAQNKIELVDK  147 (195)
T ss_dssp             ECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHH-HTC---CCEEEEEECGGGSCH
T ss_pred             ccchhhhhhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHH-hcC---ccceeeeecccchhh
Confidence            99998877544333  7889999999999765 4444555554443 232   568899999996643

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.45  E-value=7.5e-14  Score=104.55  Aligned_cols=116  Identities=15%  Similarity=0.173  Sum_probs=71.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCC-cC--CCceEEEE
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGS-EF--DEIHAALV   96 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~-~~--~~~~~~l~   96 (240)
                      ++|+|+|++|+|||||+|+|++...... ..  +.+............+..+.+||+||...+.... ..  ..++++++
T Consensus         1 k~V~ivG~~~~GKTsLl~~l~~~~~~~~-~~--t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~i~   77 (207)
T d2fh5b1           1 RAVLFVGLCDSGKTLLFVRLLTGQYRDT-QT--SITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVF   77 (207)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHSCCCCB-CC--CCSCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCcc-cC--CeeEEEEEEEEeeeeeeeeeeeeccccccccchhhhhhhhhccccce
Confidence            4799999999999999999998764322 21  1222222222111135678999999986543211 11  78899999


Q ss_pred             EEECCCCCCH--HHHHHHHHH-HHHhCCCcCCeEEEEEeCCCCCC
Q 036363           97 VFSVRSRFSQ--EEEATLHSL-QTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        97 v~~~~~~~~~--~~~~~l~~l-~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      |+|+++..+.  .....+..+ ..........|+++|+||+|...
T Consensus        78 v~D~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~  122 (207)
T d2fh5b1          78 VVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAM  122 (207)
T ss_dssp             EEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTT
T ss_pred             EEEcccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCC
Confidence            9999843322  112333333 22222333468899999999654

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.44  E-value=3.8e-13  Score=96.11  Aligned_cols=113  Identities=12%  Similarity=0.064  Sum_probs=73.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEEEEE
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAALVV   97 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~v   97 (240)
                      .+|+++|++|||||||+|+|++.........     .......... ....+.+||+||..........  ...++++++
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~~-----~~~~~~~~~~-~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~   74 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPT-----IGFNVETVEY-KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV   74 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCCCCC-----SSCCEEEEEC-SSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccccc-----eeeEEEEEee-eeEEEEEecCCCcccchhhhhhhhccceeEEEE
Confidence            3799999999999999999987664322211     1111122333 6678899999998765433332  888999999


Q ss_pred             EECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363           98 FSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        98 ~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~  139 (240)
                      ++..++.+.... ..+..+.... .....+++++.||.|....
T Consensus        75 ~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~v~~k~d~~~~  116 (160)
T d1r8sa_          75 VDSNDRERVNEAREELMRMLAED-ELRDAVLLVFANKQDLPNA  116 (160)
T ss_dssp             EETTCGGGHHHHHHHHHHHHTCG-GGTTCEEEEEEECTTSTTC
T ss_pred             EEecChHHHHHHHHHHHHHHHhh-cccCceEEEEeeccccccc
Confidence            999866555542 2222232211 2234689999999995543

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=1.5e-12  Score=94.79  Aligned_cols=110  Identities=18%  Similarity=0.116  Sum_probs=71.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCc--EEEEEeCCCCCCCCCCCcCCCceEEEE
Q 036363           19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQ--VVNVIDTPGLFDFSAGSEFDEIHAALV   96 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~~l~   96 (240)
                      ..+|+++|..|+|||||++++++... .......+.+   -...... ++.  .+.+|||+|.....   ....+|++++
T Consensus         5 ~~ki~vlG~~~vGKTsLi~~~~~~~f-~~~~~t~~~~---~~~~i~v-~~~~~~l~i~Dt~g~~~~~---~~~~ad~~il   76 (175)
T d2bmja1           5 ELRLGVLGDARSGKSSLIHRFLTGSY-QVLEKTESEQ---YKKEMLV-DGQTHLVLIREEAGAPDAK---FSGWADAVIF   76 (175)
T ss_dssp             EEEEEEECCTTTTHHHHHHHHHHSCC-CCCCCSSCEE---EEEEEEE-TTEEEEEEEEECSSCCCHH---HHHHCSEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCC-CCcCCcccee---EEEEeec-CceEEEEEEeecccccccc---cccccceeEE
Confidence            48999999999999999999988764 2222211111   1122333 553  57899999976432   1177899999


Q ss_pred             EEECCCCCCHHHHH-HHHHHHHHhC-CCcCCeEEEEEeCCCC
Q 036363           97 VFSVRSRFSQEEEA-TLHSLQTLFG-KNCFDYMIVVFSGRDE  136 (240)
Q Consensus        97 v~~~~~~~~~~~~~-~l~~l~~~~~-~~~~~~~i~v~~~~D~  136 (240)
                      |+|++++.+.+... +..++..... .....|+++|+||.|.
T Consensus        77 Vfd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~  118 (175)
T d2bmja1          77 VFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRI  118 (175)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTC
T ss_pred             EeecccchhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCc
Confidence            99999776666533 3344443322 1233578999999884

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.43  E-value=3.7e-14  Score=106.16  Aligned_cols=118  Identities=20%  Similarity=0.240  Sum_probs=72.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCC-CCCcceeEEE--EEEEE-------------------------eCCc
Q 036363           18 GVRTVVLVGHTGNGKSATGNSILGRRAFKSRAS-SSGVTSTCEM--HRTVL-------------------------KDGQ   69 (240)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~-~~~~t~~~~~--~~~~~-------------------------~~~~   69 (240)
                      +..+|+++|+.++|||||+++|++......... ....+.....  .....                         ...+
T Consensus         7 p~ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r   86 (205)
T d2qn6a3           7 PEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLR   86 (205)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEE
T ss_pred             CCeEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeeccccceE
Confidence            347999999999999999999998543211100 0000000000  00000                         0123


Q ss_pred             EEEEEeCCCCCCCCCCCcC--CCceEEEEEEECCCCC-CHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363           70 VVNVIDTPGLFDFSAGSEF--DEIHAALVVFSVRSRF-SQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        70 ~~~l~DtpG~~~~~~~~~~--~~~~~~l~v~~~~~~~-~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~  139 (240)
                      .+.++||||+.+|......  ..+|++++|+++..++ ..+.++.+..+.. ++   .+++++++||+|....
T Consensus        87 ~~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~-~~---i~~iIV~vNK~Dl~~~  155 (205)
T d2qn6a3          87 RISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGI-IG---VKNLIIVQNKVDVVSK  155 (205)
T ss_dssp             EEEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHH-TT---CCCEEEEEECGGGSCH
T ss_pred             EEEEeccchHHHHHhhhhcceeccccccccccccccccchhHHHHHHHHHH-cC---CceeeeccccCCCccc
Confidence            6889999999987543322  7789999999999776 5555555555443 33   2578999999997654

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.42  E-value=3.8e-12  Score=91.48  Aligned_cols=113  Identities=14%  Similarity=0.080  Sum_probs=77.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEEEEE
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAALVV   97 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~v   97 (240)
                      .+|++||.+|||||||+|.+++......     ..+.......... ++..+.++|++|..........  ...++++++
T Consensus         6 ~kI~ivG~~~vGKSSLi~~~~~~~~~~~-----~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (169)
T d1upta_           6 MRILILGLDGAGKTTILYRLQVGEVVTT-----IPTIGFNVETVTY-KNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYV   79 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSSCCCC-----CCCSSEEEEEEEE-TTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCCCcce-----ecccceeeeeecc-CceEEEEeeccccccccccchhhhhhhhhhhhh
Confidence            8999999999999999999998765322     1233333333444 7788999999998876655444  888999999


Q ss_pred             EECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363           98 FSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        98 ~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~  139 (240)
                      ++..+..+.... ..+....... .....+++++.||.|....
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~iv~nk~Dl~~~  121 (169)
T d1upta_          80 VDSCDRDRIGISKSELVAMLEEE-ELRKAILVVFANKQDMEQA  121 (169)
T ss_dssp             EETTCCTTHHHHHHHHHHHHTCG-GGTTCEEEEEEECTTSTTC
T ss_pred             hhhhhcchhhhccchhhhhhhhh-ccccceEEEEEeecccccc
Confidence            998855555543 2222222211 2234678999999996544

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=1.1e-13  Score=100.64  Aligned_cols=116  Identities=22%  Similarity=0.185  Sum_probs=69.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccc-cCCCCCcceeEEEEEEEEeCCc--EEEEEeCCCCC---CCCCCCcCCCce
Q 036363           19 VRTVVLVGHTGNGKSATGNSILGRRAFKS-RASSSGVTSTCEMHRTVLKDGQ--VVNVIDTPGLF---DFSAGSEFDEIH   92 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~-~~~~~~~t~~~~~~~~~~~~~~--~~~l~DtpG~~---~~~~~~~~~~~~   92 (240)
                      -.+|+++|..|+|||||++++++...... ...+.+.....  ..... ++.  .+.+||+|+..   .+........+|
T Consensus         3 ~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~--~~~~~-~~~~~~~~~~d~~~~~g~e~~~~~~~~~~~~   79 (172)
T d2g3ya1           3 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYE--RTLMV-DGESATIILLDMWENKGENEWLHDHCMQVGD   79 (172)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEE--EEEEE-TTEEEEEEEECCTTTTHHHHHHHHCCCCCCS
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCcCCccccccceeeecce--eeecc-CCceeeeeeeccccccccccccccccccccc
Confidence            37999999999999999999998654222 22222222211  22223 333  45788877542   221111127889


Q ss_pred             EEEEEEECCCCCCHHHH-HHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           93 AALVVFSVRSRFSQEEE-ATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        93 ~~l~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      ++++|+|+++..+.... .++..+....+ ....|+++|.||+|...
T Consensus        80 ~~ilvfd~t~~~s~~~~~~~~~~i~~~~~-~~~~piilvgnK~Dl~~  125 (172)
T d2g3ya1          80 AYLIVYSITDRASFEKASELRIQLRRARQ-TEDIPIILVGNKSDLVR  125 (172)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHTSGG-GTTSCEEEEEECTTCGG
T ss_pred             eeeeeecccccchhhhhhhhhhhhhhccc-cCCceEEEEeccccccc
Confidence            99999999866565543 33333332222 22367999999999543

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.41  E-value=5.5e-14  Score=106.59  Aligned_cols=116  Identities=24%  Similarity=0.324  Sum_probs=74.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCcc-----------------------------ccCCCCCcceeEEEEEEEEeCCc
Q 036363           19 VRTVVLVGHTGNGKSATGNSILGRRAFK-----------------------------SRASSSGVTSTCEMHRTVLKDGQ   69 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~-----------------------------~~~~~~~~t~~~~~~~~~~~~~~   69 (240)
                      ..+|+++|+.++|||||+.+|+......                             ......+.+.........+ ++.
T Consensus         3 ~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~-~~~   81 (224)
T d1jnya3           3 HLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFET-KKY   81 (224)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEEC-SSC
T ss_pred             ccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEEec-CCc
Confidence            4799999999999999999885321100                             0111235566666666677 888


Q ss_pred             EEEEEeCCCCCCCCCCCcC--CCceEEEEEEECCCCCCHH-------HHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363           70 VVNVIDTPGLFDFSAGSEF--DEIHAALVVFSVRSRFSQE-------EEATLHSLQTLFGKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        70 ~~~l~DtpG~~~~~~~~~~--~~~~~~l~v~~~~~~~~~~-------~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~  139 (240)
                      .++++||||+.+|......  ..+|++++|+++..+...+       ..+.+..+ ..++   .+++++++||+|...+
T Consensus        82 ~i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~-~~~~---~~~iIv~iNK~D~~~~  156 (224)
T d1jnya3          82 FFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILA-KTMG---LDQLIVAVNKMDLTEP  156 (224)
T ss_dssp             EEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHH-HHTT---CTTCEEEEECGGGSSS
T ss_pred             eeEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHH-HHhC---CCceEEEEEcccCCCc
Confidence            9999999999999765544  8899999999998664332       22222222 2223   3568999999997643

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.38  E-value=2e-12  Score=92.52  Aligned_cols=112  Identities=9%  Similarity=-0.016  Sum_probs=76.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEEEEEE
Q 036363           21 TVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAALVVF   98 (240)
Q Consensus        21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~v~   98 (240)
                      +|+++|++|||||||+|+|++......     ..|.......... .+....++|++|...+......  ...+++++++
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~~~~~-----~~t~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDRLATL-----QPTWHPTSEELAI-GNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLV   75 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCC-----CCCCSCEEEEECC-TTCCEEEEECCCSGGGGGGGGGGCTTCSEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCee-----eceeeEeEEEecc-CCeeEEEEeeccchhhhhhHhhhhhheeeeeeec
Confidence            799999999999999999998764321     2233333334444 6678899999998766554444  8889999999


Q ss_pred             ECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           99 SVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        99 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      +.++..+......+.............|++++.||.|...
T Consensus        76 d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~k~d~~~  115 (166)
T d2qtvb1          76 DAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN  115 (166)
T ss_dssp             ETTCGGGHHHHHHHHHHHHTCTTTTTCCEEEEEECTTSSS
T ss_pred             cccchhhhhhhhHHHHhhhhhhccCCceEEEEeccccccc
Confidence            9986655554332222222222334567899999999654

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.37  E-value=1.2e-12  Score=100.24  Aligned_cols=116  Identities=21%  Similarity=0.266  Sum_probs=66.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHh---CCCCcc--------------------------ccCCCCCcceeEEEEEEEEeCC
Q 036363           18 GVRTVVLVGHTGNGKSATGNSIL---GRRAFK--------------------------SRASSSGVTSTCEMHRTVLKDG   68 (240)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlin~l~---g~~~~~--------------------------~~~~~~~~t~~~~~~~~~~~~~   68 (240)
                      +..+|+++|+.++|||||+.+|+   |.....                          ......+.+.........+ .+
T Consensus        23 ~~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~-~~  101 (245)
T d1r5ba3          23 EHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFET-EH  101 (245)
T ss_dssp             EEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEEC-SS
T ss_pred             CceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCcccccccccccc-cc
Confidence            34689999999999999999994   321100                          0001123344444444555 77


Q ss_pred             cEEEEEeCCCCCCCCCCCcC--CCceEEEEEEECCCCCC-------HHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           69 QVVNVIDTPGLFDFSAGSEF--DEIHAALVVFSVRSRFS-------QEEEATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        69 ~~~~l~DtpG~~~~~~~~~~--~~~~~~l~v~~~~~~~~-------~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      ..+.++||||+.+|......  ..+|++++|+++..+.-       .+..+.+..+. .++   .+++++++||+|...
T Consensus       102 ~~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~-~~~---i~~iiv~iNKmD~~~  176 (245)
T d1r5ba3         102 RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLAR-TQG---INHLVVVINKMDEPS  176 (245)
T ss_dssp             EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHH-HTT---CSSEEEEEECTTSTT
T ss_pred             ceeeeecccccccchhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHHH-HcC---CCeEEEEEEcCCCCc
Confidence            88999999999999877666  89999999999985432       23344443333 223   356899999999753

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.37  E-value=7.8e-11  Score=92.75  Aligned_cols=117  Identities=15%  Similarity=0.193  Sum_probs=72.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCC-cceeEEEEE------------------------------------
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSG-VTSTCEMHR------------------------------------   62 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~-~t~~~~~~~------------------------------------   62 (240)
                      .+|+++|..++|||||+|+|+|....+++..+.. ......+..                                    
T Consensus        27 P~ivvvG~~SsGKSsliNaLlg~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (299)
T d2akab1          27 PQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGT  106 (299)
T ss_dssp             CEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHCSS
T ss_pred             CeEEEEcCCCCCHHHHHHHHhCCCcCCCCCCccccCCEEEEEeccccceeEEEeCCCCeeCCHHHHHHHHHHHHHHhhCC
Confidence            5899999999999999999999886555443221 111111111                                    


Q ss_pred             ------------EEEeCCcEEEEEeCCCCCCCCCCCcC---------------CCc-eEEEEEEECCCCCCHHHHHHHHH
Q 036363           63 ------------TVLKDGQVVNVIDTPGLFDFSAGSEF---------------DEI-HAALVVFSVRSRFSQEEEATLHS  114 (240)
Q Consensus        63 ------------~~~~~~~~~~l~DtpG~~~~~~~~~~---------------~~~-~~~l~v~~~~~~~~~~~~~~l~~  114 (240)
                                  ...+....+.++||||+.........               ..+ +.+++|.++...++..+  .+..
T Consensus       107 ~~~~~~~~i~l~~~~p~~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~--~~~~  184 (299)
T d2akab1         107 NKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSD--ALKI  184 (299)
T ss_dssp             TTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCH--HHHH
T ss_pred             CcCcCCccEEEEEcCCCCCCeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhH--HHHH
Confidence                        11111235789999999876544432               334 45667777775565553  2222


Q ss_pred             HHHHhCCCcCCeEEEEEeCCCCCCCC
Q 036363          115 LQTLFGKNCFDYMIVVFSGRDELEAN  140 (240)
Q Consensus       115 l~~~~~~~~~~~~i~v~~~~D~~~~~  140 (240)
                      +...  .....++++|+||+|.+.+.
T Consensus       185 ~~~~--~~~~~r~i~Vltk~D~~~~~  208 (299)
T d2akab1         185 AKEV--DPQGQRTIGVITKLDLMDEG  208 (299)
T ss_dssp             HHHH--CTTCSSEEEEEECGGGSCTT
T ss_pred             HHHh--CcCCCceeeEEeccccccch
Confidence            3322  23336799999999987654

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=99.35  E-value=2e-11  Score=89.17  Aligned_cols=141  Identities=13%  Similarity=0.187  Sum_probs=75.1

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC-------
Q 036363           16 SNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF-------   88 (240)
Q Consensus        16 ~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~-------   88 (240)
                      .....+|+|+|.+|+|||||+|+|++......... .+.+.......... .+......++++..........       
T Consensus        13 ~~~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (188)
T d1puia_          13 SDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSK-TPGRTQLINLFEVA-DGKRLVDLPGYGYAEVPEEMKRKWQRALG   90 (188)
T ss_dssp             CSCSEEEEEEECTTSSHHHHHTTTCCC--------------CCEEEEEEE-TTEEEEECCCCC------CCHHHHHHHHH
T ss_pred             CccCCEEEEECCCCCCHHHHHHHHhCCCceEeecc-cccceeeccceecc-cccceeeeecccccchhhhhhhhhhhhhh
Confidence            33459999999999999999999999764333222 22222222222222 4444444444443333322222       


Q ss_pred             ------CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCCCcccHHHHhcccCCchHHHHHHH
Q 036363           89 ------DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEANDETLEDYLGRECPKPLKEILHL  162 (240)
Q Consensus        89 ------~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (240)
                            .....++++.+............+..+...     ..+.++++||+|.+...  .....+..     +.+.+..
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~v~~k~D~~~~~--~~~~~~~~-----~~~~l~~  158 (188)
T d1puia_          91 EYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDS-----NIAVLVLLTKADKLASG--ARKAQLNM-----VREAVLA  158 (188)
T ss_dssp             HHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT-----TCCEEEEEECGGGSCHH--HHHHHHHH-----HHHHHGG
T ss_pred             hhhhhhhheeEEEEeecccccchhHHHHHHHHhhhc-----cccccchhhhhhccCHH--HHHHHHHH-----HHHHHHh
Confidence                  556667777777777777777776666542     24688999999977642  33333332     4455555


Q ss_pred             hCCcEEEE
Q 036363          163 FDNRCVLF  170 (240)
Q Consensus       163 ~~~~~~~~  170 (240)
                      .....-++
T Consensus       159 ~~~~~~~i  166 (188)
T d1puia_         159 FNGDVQVE  166 (188)
T ss_dssp             GCSCEEEE
T ss_pred             hCCCCcEE
Confidence            55443333

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.34  E-value=3e-12  Score=93.21  Aligned_cols=112  Identities=19%  Similarity=0.260  Sum_probs=71.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCc-----------C
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSE-----------F   88 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~-----------~   88 (240)
                      -.|+|+|.+|+|||||+|+|+|........ ...++.......... +...+.++|+||.........           .
T Consensus         6 ~~I~iiG~~nvGKSSLin~L~~~~~~~~~~-~~~t~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (179)
T d1egaa1           6 GFIAIVGRPNVGKSTLLNKLLGQKISITSR-KAQTTRHRIVGIHTE-GAYQAIYVDTPGLHMEEKRAINRLMNKAASSSI   83 (179)
T ss_dssp             EEEEEECSSSSSHHHHHHHHHTCSEEECCC-CSSCCSSCEEEEEEE-TTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCceeecc-CCCceEEEEEeeeec-CCceeEeecCCCceecchhhhhhhhhhccccch
Confidence            468999999999999999999986543332 222222222233333 666778899998764321110           0


Q ss_pred             CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363           89 DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        89 ~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~  139 (240)
                      ..+++++++.+.. +...........+.    .. ..+.++|+|++|.+..
T Consensus        84 ~~~~~~l~~~d~~-~~~~~~~~~~~~l~----~~-~~~~i~v~~k~d~~~~  128 (179)
T d1egaa1          84 GDVELVIFVVEGT-RWTPDDEMVLNKLR----EG-KAPVILAVNKVDNVQE  128 (179)
T ss_dssp             CCEEEEEEEEETT-CCCHHHHHHHHHHH----SS-SSCEEEEEESTTTCCC
T ss_pred             hhcceeEEEEecC-ccchhHHHHHHHhh----hc-cCceeeeeeeeeccch
Confidence            6678888888887 55555444444443    22 2457889999997764

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.30  E-value=5.2e-13  Score=100.61  Aligned_cols=46  Identities=30%  Similarity=0.373  Sum_probs=41.3

Q ss_pred             CCCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            2 GGSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      |+..++++++|++++|  ..++|+||||||||||+++|+|...+.+|.
T Consensus        11 g~~~~l~~isl~i~~G--ei~~liGpsGsGKSTLl~~i~Gl~~p~sG~   56 (232)
T d2awna2          11 GEVVVSKDINLDIHEG--EFVVFVGPSGCGKSTLLRMIAGLETITSGD   56 (232)
T ss_dssp             TTEEEEEEEEEEECTT--CEEEEECCTTSSHHHHHHHHHTSSCCSEEE
T ss_pred             CCEEEEeeeEEEEcCC--CEEEEECCCCChHHHHHHHHhcCCCCCCCE
Confidence            4567889999999999  999999999999999999999998776654

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.29  E-value=1.5e-11  Score=89.70  Aligned_cols=115  Identities=14%  Similarity=0.075  Sum_probs=70.9

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEE
Q 036363           17 NGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAA   94 (240)
Q Consensus        17 ~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~   94 (240)
                      +...+|+|||++|||||||+++|++....... ...+    .......+ ++....++|+++..........  ...+++
T Consensus        11 ~k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~~-~~~~----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (186)
T d1f6ba_          11 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHV-PTLH----PTSEELTI-AGMTFTTFDLGGHIQARRVWKNYLPAINGI   84 (186)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCC----CSCEEEEE-TTEEEEEEEECC----CCGGGGGGGGCSEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccee-cccc----cceeEEEe-cccccccccccchhhhhhHHhhhhccccee
Confidence            33489999999999999999999987653221 1111    12223344 6778889999998887766555  889999


Q ss_pred             EEEEECCCCCCHHHHH-HHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           95 LVVFSVRSRFSQEEEA-TLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        95 l~v~~~~~~~~~~~~~-~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      +++++..+........ .+...... ......|++++.||.|...
T Consensus        85 ~~~~d~~d~~~~~~~~~~~~~~~~~-~~~~~~~~li~~~K~D~~~  128 (186)
T d1f6ba_          85 VFLVDCADHERLLESKEELDSLMTD-ETIANVPILILGNKIDRPE  128 (186)
T ss_dssp             EEEEETTCGGGHHHHHHHHHHHHTC-GGGTTSCEEEEEECTTSTT
T ss_pred             eeeeeccCccchHHHHHHHHHhhcc-cccCCCceEEEEeccCccc
Confidence            9999988554444322 22222211 1222367999999999543

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=99.27  E-value=3.5e-11  Score=95.11  Aligned_cols=30  Identities=30%  Similarity=0.499  Sum_probs=24.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      .+|++||..++|||||+|+|+|....+.+.
T Consensus        25 P~ivVvG~~ssGKSSliNaLlG~~~lP~~~   54 (306)
T d1jwyb_          25 PQIVVVGSQSSGKSSVLENIVGRDFLPRGS   54 (306)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHTSCCCCC--
T ss_pred             CeEEEEeCCCCCHHHHHHHHhCCCCCCCCC
Confidence            489999999999999999999988644443

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.27  E-value=1e-12  Score=99.32  Aligned_cols=46  Identities=26%  Similarity=0.290  Sum_probs=41.4

Q ss_pred             CCCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            2 GGSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      |+..++++++|.+++|  ..++|+|+||||||||+++|+|...+.+|.
T Consensus        17 g~~~al~~vsl~v~~G--e~~~liGpsGaGKSTLl~~i~Gl~~p~sG~   62 (239)
T d1v43a3          17 GNFTAVNKLNLTIKDG--EFLVLLGPSGCGKTTTLRMIAGLEEPTEGR   62 (239)
T ss_dssp             TTEEEEEEEEEEECTT--CEEEEECCTTSSHHHHHHHHHTSSCCSEEE
T ss_pred             CCEEEEcceeEEECCC--CEEEEECCCCChHHHHHHHHHcCCCCCCCE
Confidence            4567899999999999  999999999999999999999998776654

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.25  E-value=3.6e-11  Score=88.91  Aligned_cols=110  Identities=15%  Similarity=0.107  Sum_probs=69.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEEEEE
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAALVV   97 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~v   97 (240)
                      .+|+++|.+|||||||++++.   ......+    |.......... ....+.+||++|.......+..  ...++++++
T Consensus         3 iKivllG~~~vGKTsll~r~~---f~~~~~p----TiG~~~~~~~~-~~~~~~~~D~~gq~~~~~~~~~~~~~~~~~~~~   74 (200)
T d1zcba2           3 VKILLLGAGESGKSTFLKQMR---IIHGQDP----TKGIHEYDFEI-KNVPFKMVDVGGQRSERKRWFECFDSVTSILFL   74 (200)
T ss_dssp             EEEEEECSTTSSHHHHHHHHH---HHHSCCC----CSSEEEEEEEE-TTEEEEEEEECC-------CTTSCTTCCEEEEE
T ss_pred             EEEEEECCCCCCHHHHHHHHh---cCCCCCC----eeeeEEEEEee-eeeeeeeecccceeeecccccccccccceeEEE
Confidence            799999999999999999993   1122222    33344455566 7889999999999887666555  888999999


Q ss_pred             EECCCCCCH--------HHHHHHHHHHHHhCC--CcCCeEEEEEeCCCCC
Q 036363           98 FSVRSRFSQ--------EEEATLHSLQTLFGK--NCFDYMIVVFSGRDEL  137 (240)
Q Consensus        98 ~~~~~~~~~--------~~~~~l~~l~~~~~~--~~~~~~i~v~~~~D~~  137 (240)
                      ++.++....        .....+..+...+..  ....|+++++||+|.+
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~  124 (200)
T d1zcba2          75 VSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLL  124 (200)
T ss_dssp             EETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHH
T ss_pred             EEcCCcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhh
Confidence            998754322        112222233332221  2246899999999965

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=99.24  E-value=3.5e-12  Score=96.52  Aligned_cols=84  Identities=18%  Similarity=0.239  Sum_probs=55.6

Q ss_pred             CCCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEE---eCCcEEEEEeCCC
Q 036363            2 GGSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVL---KDGQVVNVIDTPG   78 (240)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~~~l~DtpG   78 (240)
                      |+..++++++|.+++|  ..++|+|+||||||||+++|+|...+.+|................+   .....-++.+.|+
T Consensus        14 g~~~al~~vsl~i~~G--e~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~~r~ig~v~Q~~~   91 (240)
T d1g2912          14 GEVTAVREMSLEVKDG--EFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYA   91 (240)
T ss_dssp             TTEEEEEEEEEEEETT--CEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCC
T ss_pred             CCEEEEcceeeEEcCC--CEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEEecccchhhhcccccccceecccchh
Confidence            4567889999999999  9999999999999999999999987766544222111100000000   0122346777787


Q ss_pred             CCCCCCCCc
Q 036363           79 LFDFSAGSE   87 (240)
Q Consensus        79 ~~~~~~~~~   87 (240)
                      ++...+..+
T Consensus        92 L~~~ltV~e  100 (240)
T d1g2912          92 LYPHMTVYD  100 (240)
T ss_dssp             CCTTSCHHH
T ss_pred             hcchhhhhH
Confidence            776655443

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.20  E-value=8.3e-11  Score=88.56  Aligned_cols=122  Identities=17%  Similarity=0.199  Sum_probs=80.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEEEEE
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAALVV   97 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~v   97 (240)
                      .+|+++|..|||||||++.+.....    .+    |.........+ ++..+.+||+.|.......+..  ..+++++++
T Consensus         7 ~KilllG~~~vGKTsll~~~~~~~~----~p----TiG~~~~~~~~-~~~~~~~~D~~Gq~~~r~~w~~~~~~~~~ii~v   77 (221)
T d1azta2           7 HRLLLLGAGESGKSTIVKQMRILHV----VL----TSGIFETKFQV-DKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFV   77 (221)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHC----CC----CCSCEEEEEEE-TTEEEEEEECCCSTTTTTGGGGGCTTCSEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCc----CC----CCCeEEEEEEE-CcEEEEEEecCccceeccchhhhcccccceEEE
Confidence            7999999999999999999863221    11    22233344555 7889999999999988777666  899999999


Q ss_pred             EECCCC--------CCHHHHHHHHHHHHHhCCC--cCCeEEEEEeCCCCCCCC----cccHHHHhcc
Q 036363           98 FSVRSR--------FSQEEEATLHSLQTLFGKN--CFDYMIVVFSGRDELEAN----DETLEDYLGR  150 (240)
Q Consensus        98 ~~~~~~--------~~~~~~~~l~~l~~~~~~~--~~~~~i~v~~~~D~~~~~----~~~~~~~~~~  150 (240)
                      ++.++.        ......+.+..+...+...  ...|+++++||+|.+...    ...+.++...
T Consensus        78 ~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~~~k~~~~~~~~~~~f~~  144 (221)
T d1azta2          78 VASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPE  144 (221)
T ss_dssp             EETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHHHHHCSSCHHHHCGG
T ss_pred             EEccccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhhhhhhccCcccHHHhCcc
Confidence            998631        1111123333344444432  236899999999965331    1245555444

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=99.19  E-value=1.7e-12  Score=98.56  Aligned_cols=46  Identities=22%  Similarity=0.168  Sum_probs=41.9

Q ss_pred             CCCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            2 GGSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      |++.++++++|.+.+|  ..++|+|+||||||||+++|+|...+.+|.
T Consensus        13 g~~~vl~~vs~~v~~G--ei~glvG~nGaGKSTLl~~l~G~~~p~~G~   58 (238)
T d1vpla_          13 GKKEILKGISFEIEEG--EIFGLIGPNGAGKTTTLRIISTLIKPSSGI   58 (238)
T ss_dssp             TTEEEEEEEEEEECTT--CEEEEECCTTSSHHHHHHHHTTSSCCSEEE
T ss_pred             CCEEEEccceeEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCCE
Confidence            5678999999999999  999999999999999999999998776654

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=99.18  E-value=1.2e-12  Score=99.58  Aligned_cols=46  Identities=26%  Similarity=0.385  Sum_probs=41.6

Q ss_pred             CCCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            2 GGSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      |+..++++++|.+++|  ..++|+||||||||||+++|+|...+.+|.
T Consensus        17 g~~~al~~vs~~i~~G--ei~~liGpnGaGKSTl~~~i~Gl~~p~~G~   62 (240)
T d1ji0a_          17 GAIHAIKGIDLKVPRG--QIVTLIGANGAGKTTTLSAIAGLVRAQKGK   62 (240)
T ss_dssp             TTEEEEEEEEEEEETT--CEEEEECSTTSSHHHHHHHHTTSSCCSEEE
T ss_pred             CCEEEEeeeeEEECCC--CEEEEECCCCCcHHHHHHHHhCCCCCCccE
Confidence            5667899999999999  999999999999999999999998776654

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.17  E-value=2.3e-11  Score=89.50  Aligned_cols=109  Identities=9%  Similarity=0.038  Sum_probs=73.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEEEE
Q 036363           19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAALV   96 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~   96 (240)
                      ..+|+++|..|+|||||++.+.....+..         ......... ....+.+|||.|...+...+..  ..++++++
T Consensus         2 e~KivllG~~~vGKTsl~~r~~~~~~~t~---------~~~~~~~~~-~~~~~~i~D~~Gq~~~~~~~~~~~~~~~~~i~   71 (195)
T d1svsa1           2 EVKLLLLGAGESGKSTIVKQMKIIHEAGT---------GIVETHFTF-KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIF   71 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHSCCC---------SEEEEEEEE-TTEEEEEEEECCSGGGGGGGGGGCTTCSEEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCCCCc---------cEEEEEEEe-eeeeeeeeccccccccccchhhcccCCceeee
Confidence            37999999999999999999875433211         112233445 7788999999999988777666  99999999


Q ss_pred             EEECCCCCCHH--------HHHHHHHHHHHhC--CCcCCeEEEEEeCCCCC
Q 036363           97 VFSVRSRFSQE--------EEATLHSLQTLFG--KNCFDYMIVVFSGRDEL  137 (240)
Q Consensus        97 v~~~~~~~~~~--------~~~~l~~l~~~~~--~~~~~~~i~v~~~~D~~  137 (240)
                      |++.++..+..        ...........+.  .....|+++++||+|.+
T Consensus        72 v~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~~  122 (195)
T d1svsa1          72 CVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLF  122 (195)
T ss_dssp             EEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHH
T ss_pred             EEeecccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEEEeccchhh
Confidence            99986432221        1122222222222  12236899999999853

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.17  E-value=6.7e-12  Score=94.88  Aligned_cols=45  Identities=16%  Similarity=0.177  Sum_probs=40.4

Q ss_pred             CCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCC
Q 036363            4 SRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRAS   50 (240)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~   50 (240)
                      ..++++++|++.+|  ..++|+|+||||||||+++|.|...+.+|..
T Consensus        18 ~~aL~~vsl~i~~G--e~~~iiG~sGsGKSTll~~i~gl~~p~~G~I   62 (242)
T d1oxxk2          18 VVALDNVNINIENG--ERFGILGPSGAGKTTFMRIIAGLDVPSTGEL   62 (242)
T ss_dssp             EEEEEEEEEEECTT--CEEEEECSCHHHHHHHHHHHHTSSCCSEEEE
T ss_pred             EEEEeceEEEECCC--CEEEEECCCCCcHHHHHHHHHcCcCCCCceE
Confidence            45789999999999  9999999999999999999999887766643

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.14  E-value=5.3e-11  Score=91.21  Aligned_cols=46  Identities=22%  Similarity=0.291  Sum_probs=41.3

Q ss_pred             CCCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            2 GGSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      |+..++++++|++.+|  ..++|+|+||||||||+++|+|...+.+|.
T Consensus        13 g~~~al~~vs~~i~~G--Ei~~iiG~sGsGKSTLl~~i~Gl~~p~~G~   58 (258)
T d1b0ua_          13 GGHEVLKGVSLQARAG--DVISIIGSSGSGKSTFLRCINFLEKPSEGA   58 (258)
T ss_dssp             TTEEEEEEEEEEECTT--CEEEEECCTTSSHHHHHHHHTTSSCCSEEE
T ss_pred             CCEEEEcceeeEEcCC--CEEEEECCCCCcHHHHHHHHHcCccCCCCC
Confidence            5567899999999999  999999999999999999999988766554

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=99.14  E-value=3.4e-12  Score=95.78  Aligned_cols=43  Identities=28%  Similarity=0.228  Sum_probs=38.9

Q ss_pred             CccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            5 RIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      .++++++|.+++|  ..++|+|+||||||||+++|+|...+.+|.
T Consensus        14 ~aL~~vs~~i~~G--e~~~liGpsGaGKSTll~~l~Gl~~p~sG~   56 (229)
T d3d31a2          14 FSLDNLSLKVESG--EYFVILGPTGAGKTLFLELIAGFHVPDSGR   56 (229)
T ss_dssp             CEEEEEEEEECTT--CEEEEECCCTHHHHHHHHHHHTSSCCSEEE
T ss_pred             EEEeeeEEEECCC--CEEEEECCCCCcHHHHHHHHhcCcCCCCCE
Confidence            4679999999999  999999999999999999999998776654

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=99.13  E-value=3.4e-12  Score=97.15  Aligned_cols=45  Identities=18%  Similarity=0.201  Sum_probs=40.8

Q ss_pred             CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      +..++++++|++++|  ..++|+|+||||||||++.|+|...+.+|.
T Consensus        14 ~~~vL~~isl~i~~G--e~vaivG~sGsGKSTLl~ll~gl~~p~~G~   58 (242)
T d1mv5a_          14 SEQILRDISFEAQPN--SIIAFAGPSGGGKSTIFSLLERFYQPTAGE   58 (242)
T ss_dssp             SSCSEEEEEEEECTT--EEEEEECCTTSSHHHHHHHHTTSSCCSBSC
T ss_pred             CCceeeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHHHhhCCCCCE
Confidence            457899999999999  999999999999999999999988776654

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.12  E-value=2.3e-10  Score=84.33  Aligned_cols=111  Identities=14%  Similarity=0.093  Sum_probs=75.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCCCCCcC--CCceEEEE
Q 036363           19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFSAGSEF--DEIHAALV   96 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~l~   96 (240)
                      ..+|+++|..|||||||++++..... . ..+    |.......... ....+.+||++|...+...+..  ..++++++
T Consensus         2 e~Kiv~lG~~~vGKTsll~r~~~~~~-~-~~p----TiG~~~~~~~~-~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~   74 (200)
T d2bcjq2           2 ELKLLLLGTGESGKSTFIKQMRIIHG-S-GVP----TTGIIEYPFDL-QSVIFRMVDVGGQRSERRKWIHCFENVTSIMF   74 (200)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHTS-S-CCC----CCSCEEEEEEC-SSCEEEEEECCCSTTGGGGGGGGCSSCSEEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCC-C-CCc----eeeEEEEEEec-cceeeeeccccccccccccccccccccceeeE
Confidence            37999999999999999999976543 1 222    33333344444 6778999999999988777666  89999999


Q ss_pred             EEECCCCCC-----------HHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363           97 VFSVRSRFS-----------QEEEATLHSLQTLFGKNCFDYMIVVFSGRDEL  137 (240)
Q Consensus        97 v~~~~~~~~-----------~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~  137 (240)
                      +++.++...           .+....+..+...- .....|+++++||.|..
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~-~~~~~~~~~v~NK~Dl~  125 (200)
T d2bcjq2          75 LVALSEYDQVLVESDNENRMEESKALFRTIITYP-WFQNSSVILFLNKKDLL  125 (200)
T ss_dssp             EEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCG-GGSSSEEEEEEECHHHH
T ss_pred             eeeccchhhhhhhhccccchHHHHHHHHHHHhhh-hccCccEEEecchhhhh
Confidence            999863221           12233344333211 11246899999999964

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.08  E-value=7.7e-12  Score=95.79  Aligned_cols=44  Identities=27%  Similarity=0.352  Sum_probs=39.4

Q ss_pred             CCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            4 SRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      ..++++++|.+++|  ..++|||++|||||||++.|+|...+.+|.
T Consensus        28 ~~~L~~isl~i~~G--e~iaivG~sGsGKSTLl~ll~gl~~p~~G~   71 (253)
T d3b60a1          28 VPALRNINLKIPAG--KTVALVGRSGSGKSTIASLITRFYDIDEGH   71 (253)
T ss_dssp             CCSEEEEEEEECTT--CEEEEEECTTSSHHHHHHHHTTTTCCSEEE
T ss_pred             CceeeceEEEEcCC--CEEEEECCCCChHHHHHHHHhcccCCCccE
Confidence            35889999999999  999999999999999999999987766544

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=99.07  E-value=5e-12  Score=96.01  Aligned_cols=45  Identities=22%  Similarity=0.249  Sum_probs=39.9

Q ss_pred             CCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            3 GSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      .+.++++++|.+++|  .+|+|+|++|||||||++.|+|...+.+|.
T Consensus        15 ~~~vL~~isl~i~~G--e~vaIvG~sGsGKSTLl~ll~gl~~p~~G~   59 (241)
T d2pmka1          15 SPVILDNINLSIKQG--EVIGIVGRSGSGKSTLTKLIQRFYIPENGQ   59 (241)
T ss_dssp             SCEEEEEEEEEEETT--CEEEEECSTTSSHHHHHHHHTTSSCCSEEE
T ss_pred             CcceEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHHhcCCCCCCE
Confidence            345889999999999  999999999999999999999987765543

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.05  E-value=1.3e-11  Score=92.72  Aligned_cols=42  Identities=21%  Similarity=0.167  Sum_probs=38.4

Q ss_pred             ccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            6 IDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      ++++++|++++|  ..++|+|+||||||||+++|+|...+.+|.
T Consensus        20 al~~isl~i~~G--e~~~iiG~sGsGKSTLl~~i~gl~~p~sG~   61 (230)
T d1l2ta_          20 ALKNVNLNIKEG--EFVSIMGPSGSGKSTMLNIIGCLDKPTEGE   61 (230)
T ss_dssp             EEEEEEEEECTT--CEEEEECSTTSSHHHHHHHHTTSSCCSEEE
T ss_pred             EEeceEEEEcCC--CEEEEECCCCCCcchhhHhccCCCCCCcce
Confidence            689999999999  999999999999999999999988766654

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=1.6e-11  Score=93.95  Aligned_cols=43  Identities=19%  Similarity=0.185  Sum_probs=39.1

Q ss_pred             CccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            5 RIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      .++++++|.+++|  ..++|+|+||||||||++.|+|...+.+|.
T Consensus        28 ~vL~~isl~i~~G--e~vaivG~sGsGKSTLl~li~gl~~p~~G~   70 (251)
T d1jj7a_          28 LVLQGLTFTLRPG--EVTALVGPNGSGKSTVAALLQNLYQPTGGQ   70 (251)
T ss_dssp             CSEEEEEEEECTT--CEEEEECSTTSSHHHHHHHHTTSSCCSEEE
T ss_pred             EeEeceEEEEcCC--CEEEEECCCCCcHHHHHHHHhcccCCCcCE
Confidence            4889999999999  999999999999999999999988766554

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.01  E-value=1.2e-11  Score=94.61  Aligned_cols=44  Identities=32%  Similarity=0.302  Sum_probs=39.7

Q ss_pred             CCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            4 SRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      ..++++++|.+++|  .+++|+|++|||||||++.|+|...+.+|.
T Consensus        31 ~~vL~~isl~i~~G--e~vaivG~sGsGKSTLl~ll~gl~~p~~G~   74 (255)
T d2hyda1          31 APILKDINLSIEKG--ETVAFVGMSGGGKSTLINLIPRFYDVTSGQ   74 (255)
T ss_dssp             CCSEEEEEEEECTT--CEEEEECSTTSSHHHHHTTTTTSSCCSEEE
T ss_pred             CcceeceEEEEcCC--CEEEEECCCCCcHHHHHHHHHhcCCccccc
Confidence            46899999999999  999999999999999999999987766554

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.98  E-value=9.1e-10  Score=87.33  Aligned_cols=79  Identities=16%  Similarity=0.007  Sum_probs=41.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEE----EE-------------------eCCcEEEEEeCC
Q 036363           21 TVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRT----VL-------------------KDGQVVNVIDTP   77 (240)
Q Consensus        21 ~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~----~~-------------------~~~~~~~l~Dtp   77 (240)
                      +|||||.++||||||+|+|+|.....+..  +.+|........    ..                   .....+.++|+|
T Consensus         2 ~v~lvG~pn~GKStlfn~lt~~~~~v~ny--pftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~p   79 (319)
T d1wxqa1           2 EIGVVGKPNVGKSTFFSAATLVDVEIANY--PFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVA   79 (319)
T ss_dssp             EEEEEECTTSSHHHHHHHHHC----------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC
T ss_pred             cEeEECCCCCCHHHHHHHHHCCCCchhcC--CCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECC
Confidence            69999999999999999999986533322  222322111100    00                   011358899999


Q ss_pred             CCCCCCCCCcC---------CCceEEEEEEECC
Q 036363           78 GLFDFSAGSEF---------DEIHAALVVFSVR  101 (240)
Q Consensus        78 G~~~~~~~~~~---------~~~~~~l~v~~~~  101 (240)
                      |+.........         ..+|++++|+++.
T Consensus        80 Gli~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~  112 (319)
T d1wxqa1          80 GLVPGAHEGRGLGNKFLDDLRMASALIHVVDAT  112 (319)
T ss_dssp             ---------------CCCSSTTCSEEEEEEETT
T ss_pred             CcccchhcccchHHHHHHhhccceEEEEEeccc
Confidence            98765433221         8999999999986

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.96  E-value=8.1e-10  Score=86.69  Aligned_cols=83  Identities=18%  Similarity=0.064  Sum_probs=58.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeC----------------CcEEEEEeCCCCCCC
Q 036363           19 VRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKD----------------GQVVNVIDTPGLFDF   82 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~----------------~~~~~l~DtpG~~~~   82 (240)
                      ..+|+|||.++||||||+|+|++...+..+. .+++|.......+..++                ...+.++|.||+...
T Consensus        10 ~~kiGivG~Pn~GKSTlfnalT~~~~~~~an-ypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv~g   88 (296)
T d1ni3a1          10 NLKTGIVGMPNVGKSTFFRAITKSVLGNPAN-YPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG   88 (296)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHHSTTTSTTC-CSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHCCCCCCcCC-CCccCccCCeEEEeccccchhhhhhcccCCceecccceeeeccccccc
Confidence            3899999999999999999999865432222 23444443333333311                126789999999887


Q ss_pred             CCCCcC---------CCceEEEEEEECCC
Q 036363           83 SAGSEF---------DEIHAALVVFSVRS  102 (240)
Q Consensus        83 ~~~~~~---------~~~~~~l~v~~~~~  102 (240)
                      ......         +.+|+++.|+++..
T Consensus        89 A~~g~GLGn~fL~~ir~~d~lihVV~~f~  117 (296)
T d1ni3a1          89 ASTGVGLGNAFLSHVRAVDAIYQVVRAFD  117 (296)
T ss_dssp             CCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             cccccccHHHHHHHhhccceeEEEEeccC
Confidence            665543         99999999999863

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.94  E-value=3.2e-10  Score=84.52  Aligned_cols=60  Identities=28%  Similarity=0.389  Sum_probs=38.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCC----CC--cceeEEEEEEEEeCCcEEEEEeCCCCCCCC
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASS----SG--VTSTCEMHRTVLKDGQVVNVIDTPGLFDFS   83 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~----~~--~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~   83 (240)
                      ...+++|++|+|||||+|+|++.....++...    .|  +|.....+  .+ . ....++||||+..+.
T Consensus        96 kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~~~~rGrHTTt~~~l~--~l-~-~gg~iiDTPG~r~~~  161 (225)
T d1u0la2          96 KISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLL--KF-D-FGGYVVDTPGFANLE  161 (225)
T ss_dssp             SEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEE--EC-T-TSCEEESSCSSTTCC
T ss_pred             CeEEEECCCCCCHHHHHHhhcchhhhhccCcccccCCCCccccceeEE--EE-C-CCcEEEeCCcccccc
Confidence            68899999999999999999987554443321    11  22222222  22 2 235799999998874

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=98.94  E-value=8.6e-11  Score=86.87  Aligned_cols=44  Identities=16%  Similarity=0.096  Sum_probs=39.8

Q ss_pred             CCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            4 SRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      .+++++++|++++|  ..++|+|+||||||||+++|+|...+.+|.
T Consensus        14 ~~vl~~is~~i~~G--ei~~l~G~NGsGKSTLl~~i~gl~~p~~G~   57 (200)
T d1sgwa_          14 KPVLERITMTIEKG--NVVNFHGPNGIGKTTLLKTISTYLKPLKGE   57 (200)
T ss_dssp             SEEEEEEEEEEETT--CCEEEECCTTSSHHHHHHHHTTSSCCSEEE
T ss_pred             CeEEeceEEEEcCC--CEEEEECCCCChHHHHHHHHhcccccCCCE
Confidence            46889999999999  999999999999999999999988766654

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.93  E-value=1.2e-10  Score=89.17  Aligned_cols=46  Identities=22%  Similarity=0.289  Sum_probs=41.5

Q ss_pred             CCCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            2 GGSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      |+..++++++|++.+|  ..++|+|+||||||||+++|+|...+.+|.
T Consensus        15 g~~~aL~~vs~~v~~G--ei~~liG~nGaGKSTLl~~i~Gl~~p~~G~   60 (254)
T d1g6ha_          15 GEFKALDGVSISVNKG--DVTLIIGPNGSGKSTLINVITGFLKADEGR   60 (254)
T ss_dssp             TTEEEEEEECCEEETT--CEEEEECSTTSSHHHHHHHHTTSSCCSEEE
T ss_pred             CCeEEEcceEEEECCC--CEEEEECCCCCcHHHHHHHHHCCCcCCCcE
Confidence            5667899999999999  999999999999999999999998776654

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.92  E-value=1.9e-10  Score=89.32  Aligned_cols=46  Identities=22%  Similarity=0.291  Sum_probs=41.2

Q ss_pred             CCCCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            2 GGSRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      +|.++++|++|.+++|  ..++|+|+||||||||+++|+|...+.+|.
T Consensus        47 ~g~pvL~~isl~i~~G--e~vaivG~nGsGKSTLl~~i~Gl~~p~~G~   92 (281)
T d1r0wa_          47 VGNPVLKNINLNIEKG--EMLAITGSTGSGKTSLLMLILGELEASEGI   92 (281)
T ss_dssp             TTCEEEEEEEEEECTT--CEEEEEESTTSSHHHHHHHHHTSSCCSEEE
T ss_pred             CCCeEEeCeEEEEcCC--CEEEEECCCCChHHHHHHHHhCCCcCCCcE
Confidence            3577899999999999  999999999999999999999987766554

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.88  E-value=3.3e-10  Score=84.69  Aligned_cols=59  Identities=32%  Similarity=0.445  Sum_probs=34.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCC----CC--cceeEEEEEEEEeCCcEEEEEeCCCCCCCC
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASS----SG--VTSTCEMHRTVLKDGQVVNVIDTPGLFDFS   83 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~----~~--~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~   83 (240)
                      ...+++|++|+|||||+|+|++.....++...    .|  +|.....+  .. ++  ..++||||+..+.
T Consensus        98 ~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~~~~rGrHTTt~~~l~--~~-~g--g~iiDTPG~r~~~  162 (231)
T d1t9ha2          98 KTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELI--HT-SG--GLVADTPGFSSLE  162 (231)
T ss_dssp             SEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEE--EE-TT--EEEESSCSCSSCC
T ss_pred             ceEEEECCCCccHHHHHHhhccHhHhhhcccccccCCCceeeeeEEEE--ec-CC--CEEEECCcccccc
Confidence            67889999999999999999997544443221    12  22222222  22 33  4699999998874

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=98.81  E-value=5.7e-10  Score=84.17  Aligned_cols=43  Identities=16%  Similarity=0.197  Sum_probs=38.9

Q ss_pred             CccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            5 RIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      .++++++|.++.|  ..++|+|+||||||||+++|.|...+.+|.
T Consensus        19 ~al~~vsl~i~~G--e~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~   61 (240)
T d3dhwc1          19 QALNNVSLHVPAG--QIYGVIGASGAGKSTLIRCVNLLERPTEGS   61 (240)
T ss_dssp             EEEEEEEEEECSS--CEEEEEESTTSSHHHHHHHHTTSSCCSEEE
T ss_pred             EEeeceeEEEcCC--CEEEEECCCCCCHHHHHHHHcCCccccCCc
Confidence            4689999999999  999999999999999999999988766554

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=98.80  E-value=1.5e-09  Score=84.40  Aligned_cols=80  Identities=19%  Similarity=0.058  Sum_probs=52.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCC----------------cEEEEEeCCCCCCCC
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDG----------------QVVNVIDTPGLFDFS   83 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~----------------~~~~l~DtpG~~~~~   83 (240)
                      .+|+|||.++||||||+|+|++.....+..  +.+|.......+.+++.                -.+.++|.||+....
T Consensus         3 ~~~GivG~Pn~GKSTlf~~lt~~~~~~~~y--pf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~ga   80 (278)
T d1jala1           3 FKCGIVGLPNVGKSTLFNALTKAGIEAANY--PFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGA   80 (278)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTC--------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTH
T ss_pred             ceEEEECCCCCCHHHHHHHHHCCCCccccC--CCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCCc
Confidence            689999999999999999999876433322  23343333333333111                147799999997654


Q ss_pred             CCCcC---------CCceEEEEEEECC
Q 036363           84 AGSEF---------DEIHAALVVFSVR  101 (240)
Q Consensus        84 ~~~~~---------~~~~~~l~v~~~~  101 (240)
                      +.-..         +.+|+++.|+++.
T Consensus        81 ~~g~Glg~~FL~~ir~~d~LihVVr~f  107 (278)
T d1jala1          81 SKGEGLGNKFLANIRETDAIGHVVRCF  107 (278)
T ss_dssp             HHHGGGTCCHHHHHHTCSEEEEEEECS
T ss_pred             ccCCCccHHHHHHHHhccceEEEeecc
Confidence            43221         9999999999874

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.76  E-value=6.7e-10  Score=83.57  Aligned_cols=38  Identities=26%  Similarity=0.263  Sum_probs=31.5

Q ss_pred             CccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 036363            9 DCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRA   49 (240)
Q Consensus         9 ~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~   49 (240)
                      |++|++. +  ..++|+||||||||||+++|+|...+.+|.
T Consensus        17 ~vs~~~~-~--e~~~liGpnGaGKSTll~~i~Gl~~p~~G~   54 (240)
T d2onka1          17 NVDFEMG-R--DYCVLLGPTGAGKSVFLELIAGIVKPDRGE   54 (240)
T ss_dssp             EEEEEEC-S--SEEEEECCTTSSHHHHHHHHHTSSCCSEEE
T ss_pred             EEEEEeC-C--EEEEEECCCCChHHHHHHHHHcCCCCCceE
Confidence            5777774 3  588899999999999999999998776654

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.75  E-value=6.3e-09  Score=80.50  Aligned_cols=61  Identities=23%  Similarity=0.351  Sum_probs=39.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeEEEEEEEEeCCcEEEEEeCCCCCCCC
Q 036363           18 GVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMHRTVLKDGQVVNVIDTPGLFDFS   83 (240)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~   83 (240)
                      ...+|++||.+++|||||+|+|.|.....++.. +|.|...+..    ..+..+.++||||+....
T Consensus       111 ~~~~v~vvG~PNvGKSsliN~L~~~~~~~~~~~-pG~Tr~~~~i----~~~~~~~l~DTPGi~~p~  171 (273)
T d1puja_         111 RAIRALIIGIPNVGKSTLINRLAKKNIAKTGDR-PGITTSQQWV----KVGKELELLDTPGILWPK  171 (273)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTSCCC-------------CCE----EETTTEEEEECCCCCCSC
T ss_pred             CceEEEEEecCccchhhhhhhhhccceEEECCc-ccccccceEE----ECCCCeEEecCCCccccC
Confidence            348999999999999999999999876555443 4555543322    145678999999997654

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=98.67  E-value=3.6e-09  Score=79.71  Aligned_cols=39  Identities=23%  Similarity=0.187  Sum_probs=35.7

Q ss_pred             CCccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCC
Q 036363            4 SRIDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRA   44 (240)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~   44 (240)
                      +..+++++|.+.+|  ..++|+|+||||||||+++|+|...
T Consensus        12 ~~~l~~isl~I~~G--ei~~iiG~nGaGKSTLl~~l~Gl~~   50 (231)
T d1l7vc_          12 STRLGPLSGEVRAG--EILHLVGPNGAGKSTLLARMAGMTS   50 (231)
T ss_dssp             TTTSCSEEEEEETT--CEEECBCCTTSSHHHHHHHHHTSCC
T ss_pred             CceecCEEEEEcCC--CEEEEECCCCCcHHHHHHHHhCCCC
Confidence            45689999999999  9999999999999999999999653

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=98.64  E-value=5.3e-09  Score=79.26  Aligned_cols=71  Identities=15%  Similarity=0.049  Sum_probs=43.5

Q ss_pred             cEEEEEeCCCCCCCCCCCcC-------CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363           69 QVVNVIDTPGLFDFSAGSEF-------DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        69 ~~~~l~DtpG~~~~~~~~~~-------~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~  139 (240)
                      ..+.++|+||+.+.......       ...+.+++++++.....+...................|.++|+||+|.+..
T Consensus        95 ~~~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~~~~~~~ivvinK~D~~~~  172 (244)
T d1yrba1          95 NDYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSE  172 (244)
T ss_dssp             CSEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCH
T ss_pred             cceeeeccccchhHHHHHHHHHHHHhhccCceEEEEeccccccCchhHhhHHHHHHHHHHHhCCCceeeeeccccccH
Confidence            35889999999765433222       456688899998755665543322222111111222568999999997754

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=98.64  E-value=2.5e-07  Score=72.86  Aligned_cols=25  Identities=20%  Similarity=0.216  Sum_probs=22.4

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHh
Q 036363           16 SNGVRTVVLVGHTGNGKSATGNSIL   40 (240)
Q Consensus        16 ~~~~~~i~lvG~~g~GKSTlin~l~   40 (240)
                      .+...+|+|.|++|||||||++.|+
T Consensus        51 ~~~~~~IgitG~pGaGKSTLi~~l~   75 (327)
T d2p67a1          51 CGNTLRLGVTGTPGAGKSTFLEAFG   75 (327)
T ss_dssp             CSCSEEEEEEECTTSCHHHHHHHHH
T ss_pred             cCCceEEEeeCCCCCCHHHHHHHHH
Confidence            3456999999999999999999997

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=98.43  E-value=4.5e-08  Score=72.20  Aligned_cols=139  Identities=13%  Similarity=0.092  Sum_probs=69.4

Q ss_pred             CCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCC----------------------CcceeEEEEEEE-------
Q 036363           14 SPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRASSS----------------------GVTSTCEMHRTV-------   64 (240)
Q Consensus        14 ~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~~~----------------------~~t~~~~~~~~~-------   64 (240)
                      ++...+..|+++||+|+||||++--|+.... ..+....                      +...........       
T Consensus         7 ~~~k~p~vi~lvGptGvGKTTTiAKLA~~~~-~~g~kV~lit~Dt~R~ga~eQL~~~a~~l~v~~~~~~~~~~~~~~~~~   85 (211)
T d1j8yf2           7 IPDKIPYVIMLVGVQGTGKATTAGKLAYFYK-KKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKR   85 (211)
T ss_dssp             SCSSSSEEEEEECSCCC----HHHHHHHHHH-HTTCCEEEEECCCSSHHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHH
T ss_pred             CCCCCCEEEEEECCCCCCHHHHHHHHHHHHH-HCCCceEEEEeeccccchhHHHHHhccccCcceeecccchhhhHHHHH
Confidence            3444558999999999999999877763211 1111000                      000000000000       


Q ss_pred             -----EeCCcEEEEEeCCCCCCCCCCCc---C-------CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEE
Q 036363           65 -----LKDGQVVNVIDTPGLFDFSAGSE---F-------DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIV  129 (240)
Q Consensus        65 -----~~~~~~~~l~DtpG~~~~~~~~~---~-------~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~  129 (240)
                           ...+..+.++||||.........   .       ..++-+++|++++.+.  ++..........++     .--+
T Consensus        86 a~~~~~~~~~d~IlIDTaGr~~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~~--~~~~~~~~~~~~~~-----~~~l  158 (211)
T d1j8yf2          86 GVEKFLSEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQ--KAYDLASKFNQASK-----IGTI  158 (211)
T ss_dssp             HHHHHHHTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGG--GHHHHHHHHHHHCT-----TEEE
T ss_pred             HHHHhhccCCceEEEecCCcCccchhhHHHHHHHHHHhhcCCceEEEEEecccCc--chHHHHhhhhcccC-----cceE
Confidence                 01334789999999865542111   1       5567788888887443  22233333333322     2347


Q ss_pred             EEeCCCCCCCCcccHHHHhcccCCchHHHHHHHhCCcEEEEeCC
Q 036363          130 VFSGRDELEANDETLEDYLGRECPKPLKEILHLFDNRCVLFDNK  173 (240)
Q Consensus       130 v~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (240)
                      ++||.|.....             -.+-.+....+.++.++...
T Consensus       159 I~TKlDet~~~-------------G~~l~~~~~~~lPi~~it~G  189 (211)
T d1j8yf2         159 IITKMDGTAKG-------------GGALSAVAATGATIKFIGTG  189 (211)
T ss_dssp             EEECTTSCSCH-------------HHHHHHHHTTTCCEEEEECS
T ss_pred             EEecccCCCcc-------------cHHHHHHHHHCcCEEEEeCC
Confidence            79999954431             11334455566676666654

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=98.43  E-value=1.7e-08  Score=74.64  Aligned_cols=142  Identities=15%  Similarity=0.144  Sum_probs=77.0

Q ss_pred             cccCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCC---------CCC---------cceeEEEEEEE--------
Q 036363           11 ELTSPSNGVRTVVLVGHTGNGKSATGNSILGRRAFKSRAS---------SSG---------VTSTCEMHRTV--------   64 (240)
Q Consensus        11 ~~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~~~~~~---------~~~---------~t~~~~~~~~~--------   64 (240)
                      .+.++++.+..|+++|++|+||||.+--|+.... ..+..         ..+         ....+..+...        
T Consensus         3 ~l~~~~~~p~vi~lvGptGvGKTTTiAKLAa~~~-~~~~kV~lit~Dt~R~gA~eQL~~~a~~l~i~~~~~~~~~d~~~~   81 (213)
T d1vmaa2           3 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFV-DEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAV   81 (213)
T ss_dssp             CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHH-HTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHH
T ss_pred             cCcCCCCCCEEEEEECCCCCCHHHHHHHHHHHHH-HCCCceEEEeecccccchhHHHHHHhhhcCccccccCCCCcHHHH
Confidence            3455666668999999999999999877763211 11110         000         00000000000        


Q ss_pred             --------EeCCcEEEEEeCCCCCCCCCCCcC--------------CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCC
Q 036363           65 --------LKDGQVVNVIDTPGLFDFSAGSEF--------------DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKN  122 (240)
Q Consensus        65 --------~~~~~~~~l~DtpG~~~~~~~~~~--------------~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~  122 (240)
                              ...+..+.++||||........-.              ..++-.++|++++.+  ..+..........++  
T Consensus        82 ~~~~~~~~~~~~~d~ilIDTaGr~~~d~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~--~~~~~~~~~~~~~~~--  157 (213)
T d1vmaa2          82 AFDAVAHALARNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG--QNGLVQAKIFKEAVN--  157 (213)
T ss_dssp             HHHHHHHHHHTTCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH--HHHHHHHHHHHHHSC--
T ss_pred             HHHHHHHHHHcCCCEEEEeccccccchHHHHHHHHHHHhhhhhccccccceeEEeeccccC--cchhhhhhhhccccC--
Confidence                    002446899999997665433211              236778889988622  233233222222222  


Q ss_pred             cCCeEEEEEeCCCCCCCCcccHHHHhcccCCchHHHHHHHhCCcEEEEeCC
Q 036363          123 CFDYMIVVFSGRDELEANDETLEDYLGRECPKPLKEILHLFDNRCVLFDNK  173 (240)
Q Consensus       123 ~~~~~i~v~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (240)
                         .-=+++||.|.....             -.+-.+...++.++.++...
T Consensus       158 ---~~~lI~TKlDe~~~~-------------G~~l~~~~~~~~Pi~~i~~G  192 (213)
T d1vmaa2         158 ---VTGIILTKLDGTAKG-------------GITLAIARELGIPIKFIGVG  192 (213)
T ss_dssp             ---CCEEEEECGGGCSCT-------------THHHHHHHHHCCCEEEEECS
T ss_pred             ---CceEEEecccCCCcc-------------cHHHHHHHHHCCCEEEEeCC
Confidence               345889999954321             22344455667777776655

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.39  E-value=1.2e-06  Score=62.48  Aligned_cols=26  Identities=23%  Similarity=0.465  Sum_probs=23.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCCCCcc
Q 036363           21 TVVLVGHTGNGKSATGNSILGRRAFK   46 (240)
Q Consensus        21 ~i~lvG~~g~GKSTlin~l~g~~~~~   46 (240)
                      +|+|+|+||+|||||++.|+|...+.
T Consensus         2 ki~I~G~~G~GKSTLl~~i~~~l~~~   27 (178)
T d1ye8a1           2 KIIITGEPGVGKTTLVKKIVERLGKR   27 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHGGG
T ss_pred             EEEEECCCCcHHHHHHHHHHhcCCCC
Confidence            69999999999999999999876543

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=98.34  E-value=7.3e-06  Score=64.23  Aligned_cols=26  Identities=27%  Similarity=0.298  Sum_probs=22.6

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhC
Q 036363           16 SNGVRTVVLVGHTGNGKSATGNSILG   41 (240)
Q Consensus        16 ~~~~~~i~lvG~~g~GKSTlin~l~g   41 (240)
                      .+...+|+|.|++|+|||||++.|..
T Consensus        48 ~~~~~~igitG~pGaGKSTli~~l~~   73 (323)
T d2qm8a1          48 TGRAIRVGITGVPGVGKSTTIDALGS   73 (323)
T ss_dssp             CCCSEEEEEECCTTSCHHHHHHHHHH
T ss_pred             cCCceEEeeeCCCCCCHHHHHHHHHH
Confidence            34559999999999999999999874

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=8.8e-07  Score=68.09  Aligned_cols=68  Identities=25%  Similarity=0.311  Sum_probs=49.2

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhCCCC-ccccCCCCCcceeEEEEEEEEe--CCcEEEEEeCCCCCCCC
Q 036363           16 SNGVRTVVLVGHTGNGKSATGNSILGRRA-FKSRASSSGVTSTCEMHRTVLK--DGQVVNVIDTPGLFDFS   83 (240)
Q Consensus        16 ~~~~~~i~lvG~~g~GKSTlin~l~g~~~-~~~~~~~~~~t~~~~~~~~~~~--~~~~~~l~DtpG~~~~~   83 (240)
                      .++...|+++|+.++|||||+|.|+|... +..+.....+|...........  .+..+.++||.|+.+..
T Consensus        29 ~~~v~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~~~~~~~~~~~lDteG~~~~~   99 (277)
T d1f5na2          29 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVE   99 (277)
T ss_dssp             CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGG
T ss_pred             CCCEEEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeeccCCCCceEEEEecccccccc
Confidence            44567999999999999999999998653 4444444556666655544331  34578899999998754

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=98.26  E-value=1.7e-07  Score=68.97  Aligned_cols=86  Identities=10%  Similarity=0.078  Sum_probs=49.0

Q ss_pred             CcEEEEEeCCCCCCCCCCCcC--------------CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeC
Q 036363           68 GQVVNVIDTPGLFDFSAGSEF--------------DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSG  133 (240)
Q Consensus        68 ~~~~~l~DtpG~~~~~~~~~~--------------~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~  133 (240)
                      +..+.++||||........-.              ..++-.++|++++.+  ..+........+.++     .-=+++||
T Consensus        91 ~~d~ilIDTaGr~~~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~--~~~~~~~~~~~~~~~-----~~~lIlTK  163 (211)
T d2qy9a2          91 NIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTG--QNAVSQAKLFHEAVG-----LTGITLTK  163 (211)
T ss_dssp             TCSEEEECCCCCGGGHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGT--HHHHHHHHHHHHHSC-----CCEEEEEC
T ss_pred             CCCEEEeccCCCccccHHHHHHHHHHHHHHhhhcccCcceeeeehhcccC--cchHHHHhhhhhccC-----CceEEEee
Confidence            346789999997544321111              246778899988732  333333333322222     34588999


Q ss_pred             CCCCCCCcccHHHHhcccCCchHHHHHHHhCCcEEEEeCC
Q 036363          134 RDELEANDETLEDYLGRECPKPLKEILHLFDNRCVLFDNK  173 (240)
Q Consensus       134 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (240)
                      .|.....             -.+-.+...++.++.++...
T Consensus       164 lDe~~~~-------------G~~l~~~~~~~~Pi~~i~~G  190 (211)
T d2qy9a2         164 LDGTAKG-------------GVIFSVADQFGIPIRYIGVG  190 (211)
T ss_dssp             CTTCTTT-------------THHHHHHHHHCCCEEEEECS
T ss_pred             cCCCCCc-------------cHHHHHHHHHCCCEEEEeCC
Confidence            9954331             22344555667777777655

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=98.22  E-value=2.1e-07  Score=68.34  Aligned_cols=86  Identities=13%  Similarity=0.079  Sum_probs=51.1

Q ss_pred             CcEEEEEeCCCCCCCCCCCcC--------------CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeC
Q 036363           68 GQVVNVIDTPGLFDFSAGSEF--------------DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSG  133 (240)
Q Consensus        68 ~~~~~l~DtpG~~~~~~~~~~--------------~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~  133 (240)
                      +..+.++||||..........              ..++-.++|++++.+.  ++........+.++-     --+++||
T Consensus        88 ~~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~--~~~~~~~~~~~~~~~-----~~lI~TK  160 (207)
T d1okkd2          88 GYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQ--NGLEQAKKFHEAVGL-----TGVIVTK  160 (207)
T ss_dssp             TCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCT--HHHHHHHHHHHHHCC-----SEEEEEC
T ss_pred             CCCEEEcCccccchhhHHHHHHHHHHHHHhhhcccCCCceEEEEeecccCc--hHHHHHHHhhhccCC-----ceEEEec
Confidence            346789999997765433111              3567789999997433  333333333333332     3578999


Q ss_pred             CCCCCCCcccHHHHhcccCCchHHHHHHHhCCcEEEEeCC
Q 036363          134 RDELEANDETLEDYLGRECPKPLKEILHLFDNRCVLFDNK  173 (240)
Q Consensus       134 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (240)
                      .|.....             -.+-.+....+.++.++...
T Consensus       161 lDet~~~-------------G~~l~~~~~~~~Pi~~i~~G  187 (207)
T d1okkd2         161 LDGTAKG-------------GVLIPIVRTLKVPIKFVGVG  187 (207)
T ss_dssp             TTSSCCC-------------TTHHHHHHHHCCCEEEEECS
T ss_pred             cCCCCCc-------------cHHHHHHHHHCCCEEEEeCC
Confidence            9965331             22344556667777766655

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=98.18  E-value=3.1e-07  Score=67.49  Aligned_cols=64  Identities=16%  Similarity=0.122  Sum_probs=40.2

Q ss_pred             CcEEEEEeCCCCCCCCCCCcC--------CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCC
Q 036363           68 GQVVNVIDTPGLFDFSAGSEF--------DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELE  138 (240)
Q Consensus        68 ~~~~~l~DtpG~~~~~~~~~~--------~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~  138 (240)
                      +..+.++||||........-.        ..++-+++|+++..+  ...........+.++-     -=+++||.|...
T Consensus        92 ~~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~--~~~~~~~~~f~~~~~~-----~~~I~TKlDe~~  163 (207)
T d1ls1a2          92 ARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG--QEALSVARAFDEKVGV-----TGLVLTKLDGDA  163 (207)
T ss_dssp             TCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT--HHHHHHHHHHHHHTCC-----CEEEEECGGGCS
T ss_pred             cCcceeecccccchhhhhhHHHHHHHHhhcCCceEEEEeccccc--hhHHHHHHHHHhhCCC-----CeeEEeecCccc
Confidence            346889999998765443222        667888899888633  3334444444443332     348899999543

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.80  E-value=5.2e-06  Score=59.28  Aligned_cols=24  Identities=29%  Similarity=0.436  Sum_probs=21.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCC
Q 036363           19 VRTVVLVGHTGNGKSATGNSILGR   42 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g~   42 (240)
                      .++|+|+|++|+|||||++.|+..
T Consensus         7 ~K~I~i~G~~GsGKTTla~~La~~   30 (192)
T d1lw7a2           7 AKTVAILGGESSGKSVLVNKLAAV   30 (192)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHH
Confidence            479999999999999999999754

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.72  E-value=8.4e-06  Score=57.34  Aligned_cols=23  Identities=13%  Similarity=0.300  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 036363           20 RTVVLVGHTGNGKSATGNSILGR   42 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~   42 (240)
                      +.|+|+|++|||||||++.|+..
T Consensus         3 Pvi~itG~~GSGKTTL~~~L~~~   25 (170)
T d1np6a_           3 PLLAFAAWSGTGKTTLLKKLIPA   25 (170)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHH
Confidence            57999999999999999999853

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.58  E-value=2.1e-05  Score=55.51  Aligned_cols=23  Identities=22%  Similarity=0.505  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 036363           20 RTVVLVGHTGNGKSATGNSILGR   42 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~   42 (240)
                      .+|+|+|++||||||+.+.|...
T Consensus         6 ~~I~i~G~~GsGKTT~~~~La~~   28 (174)
T d1y63a_           6 INILITGTPGTGKTSMAEMIAAE   28 (174)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEEeCCCCCHHHHHHHHHHH
Confidence            79999999999999999999753

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.54  E-value=0.00012  Score=54.13  Aligned_cols=25  Identities=28%  Similarity=0.445  Sum_probs=21.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCC
Q 036363           18 GVRTVVLVGHTGNGKSATGNSILGR   42 (240)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlin~l~g~   42 (240)
                      +....+|.|.-|||||||++.++..
T Consensus         2 ~iPv~iitGFLGaGKTTll~~lL~~   26 (222)
T d1nija1           2 PIAVTLLTGFLGAGKTTLLRHILNE   26 (222)
T ss_dssp             CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred             CCCEEEEeeCCCCCHHHHHHHHHhc
Confidence            4578899999999999999999864

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.54  E-value=2.8e-05  Score=55.90  Aligned_cols=27  Identities=19%  Similarity=0.277  Sum_probs=22.7

Q ss_pred             CCCCceEEEEEcCCCCcHHHHHHHHhC
Q 036363           15 PSNGVRTVVLVGHTGNGKSATGNSILG   41 (240)
Q Consensus        15 ~~~~~~~i~lvG~~g~GKSTlin~l~g   41 (240)
                      .+..+..|+|.|++|||||||.+.|..
T Consensus        18 ~~~~~~iIgI~G~~GSGKSTla~~L~~   44 (198)
T d1rz3a_          18 KTAGRLVLGIDGLSRSGKTTLANQLSQ   44 (198)
T ss_dssp             CCSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             cCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            344458899999999999999999864

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.50  E-value=3.1e-05  Score=53.40  Aligned_cols=22  Identities=23%  Similarity=0.548  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 036363           20 RTVVLVGHTGNGKSATGNSILG   41 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g   41 (240)
                      ..|+++|++|||||||.+.|+.
T Consensus         3 klIii~G~pGsGKTTla~~L~~   24 (152)
T d1ly1a_           3 KIILTIGCPGSGKSTWAREFIA   24 (152)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            5688999999999999998864

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.50  E-value=3.2e-05  Score=55.61  Aligned_cols=25  Identities=28%  Similarity=0.509  Sum_probs=22.0

Q ss_pred             CCCCceEEEEEcCCCCcHHHHHHHHhC
Q 036363           15 PSNGVRTVVLVGHTGNGKSATGNSILG   41 (240)
Q Consensus        15 ~~~~~~~i~lvG~~g~GKSTlin~l~g   41 (240)
                      |+|  .+|+|+|++||||||..+.|+.
T Consensus         1 p~~--~riil~G~pGSGKsT~a~~La~   25 (190)
T d1ak2a1           1 PKG--VRAVLLGPPGAGKGTQAPKLAK   25 (190)
T ss_dssp             CCC--CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCc--cEEEEECCCCCCHHHHHHHHHH
Confidence            455  7999999999999999999973

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.48  E-value=3e-05  Score=54.46  Aligned_cols=23  Identities=17%  Similarity=0.196  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 036363           20 RTVVLVGHTGNGKSATGNSILGR   42 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~   42 (240)
                      ..|+|+|.+|||||||++.|+..
T Consensus         2 kii~I~G~~gSGKTTli~~l~~~   24 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWVAA   24 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHH
Confidence            57899999999999999998754

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.47  E-value=2.6e-05  Score=54.20  Aligned_cols=23  Identities=39%  Similarity=0.699  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 036363           20 RTVVLVGHTGNGKSATGNSILGR   42 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~   42 (240)
                      ..|.|+|++||||||+.+.|+..
T Consensus         3 k~I~l~G~~GsGKSTvak~La~~   25 (169)
T d1kaga_           3 RNIFLVGPMGAGKSTIGRQLAQQ   25 (169)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            57999999999999999999753

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.47  E-value=2.4e-05  Score=55.03  Aligned_cols=22  Identities=27%  Similarity=0.599  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 036363           20 RTVVLVGHTGNGKSATGNSILG   41 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g   41 (240)
                      .+|+|+|++||||||+.+.|+.
T Consensus         5 ~~I~i~G~pGsGKTTia~~La~   26 (173)
T d1rkba_           5 PNILLTGTPGVGKTTLGKELAS   26 (173)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5789999999999999999964

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.42  E-value=6.5e-05  Score=53.22  Aligned_cols=23  Identities=39%  Similarity=0.375  Sum_probs=20.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhC
Q 036363           19 VRTVVLVGHTGNGKSATGNSILG   41 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g   41 (240)
                      +..|+++|.+||||||+.+.++.
T Consensus        14 p~liil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          14 PEVVVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHTG
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            37999999999999999998864

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.42  E-value=4.1e-05  Score=54.72  Aligned_cols=24  Identities=38%  Similarity=0.440  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCC
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRR   43 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~   43 (240)
                      ..|+|+||+||||||+++.|....
T Consensus         3 ~iivl~GpsG~GK~tl~~~L~~~~   26 (182)
T d1znwa1           3 RVVVLSGPSAVGKSTVVRCLRERI   26 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhC
Confidence            678999999999999999997643

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.38  E-value=6.6e-05  Score=54.06  Aligned_cols=24  Identities=25%  Similarity=0.450  Sum_probs=21.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCC
Q 036363           19 VRTVVLVGHTGNGKSATGNSILGR   42 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g~   42 (240)
                      +..|+|+|++||||||+.+.|+..
T Consensus         6 p~iI~i~G~pGSGKsT~a~~La~~   29 (194)
T d1qf9a_           6 PNVVFVLGGPGSGKGTQCANIVRD   29 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            378999999999999999998743

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.37  E-value=5.1e-05  Score=53.20  Aligned_cols=23  Identities=26%  Similarity=0.494  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 036363           20 RTVVLVGHTGNGKSATGNSILGR   42 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~   42 (240)
                      ..|+|.|++||||||+.+.|...
T Consensus         3 klI~i~G~~GsGKTTva~~L~~~   25 (176)
T d2bdta1           3 KLYIITGPAGVGKSTTCKRLAAQ   25 (176)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            56899999999999999999854

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.34  E-value=8.7e-05  Score=52.18  Aligned_cols=24  Identities=29%  Similarity=0.555  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCC
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRR   43 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~   43 (240)
                      ..|+|.|++||||||+.+.|....
T Consensus         5 ~iI~l~G~~GsGKSTia~~La~~l   28 (176)
T d1zp6a1           5 NILLLSGHPGSGKSTIAEALANLP   28 (176)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHTCS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            679999999999999999998653

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.33  E-value=4.6e-05  Score=54.00  Aligned_cols=23  Identities=30%  Similarity=0.343  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 036363           20 RTVVLVGHTGNGKSATGNSILGR   42 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~   42 (240)
                      +.|.|.|++|+|||||+..++..
T Consensus         2 k~v~ItG~~GtGKTtl~~~i~~~   24 (189)
T d2i3ba1           2 RHVFLTGPPGVGKTTLIHKASEV   24 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHH
T ss_pred             cEEEEECCCCCcHHHHHHHHHHH
Confidence            46899999999999999998754

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.32  E-value=7.6e-05  Score=52.60  Aligned_cols=23  Identities=26%  Similarity=0.339  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 036363           20 RTVVLVGHTGNGKSATGNSILGR   42 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~   42 (240)
                      ..|.|+|.+||||||+.+.|...
T Consensus         7 ~~I~l~G~~GsGKTTia~~La~~   29 (183)
T d1m8pa3           7 FTIFLTGYMNSGKDAIARALQVT   29 (183)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            88999999999999999988743

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.31  E-value=8.7e-05  Score=51.98  Aligned_cols=23  Identities=35%  Similarity=0.573  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 036363           20 RTVVLVGHTGNGKSATGNSILGR   42 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~   42 (240)
                      ..|+|+|++||||||+.+.|...
T Consensus         7 ~iivl~G~~GsGKsT~a~~La~~   29 (171)
T d1knqa_           7 HIYVLMGVSGSGKSAVASEVAHQ   29 (171)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            78889999999999999998753

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.30  E-value=7.1e-05  Score=54.74  Aligned_cols=24  Identities=25%  Similarity=0.237  Sum_probs=21.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCC
Q 036363           19 VRTVVLVGHTGNGKSATGNSILGR   42 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g~   42 (240)
                      +..|+|.|++|||||||.+.|...
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~~~   25 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIVQL   25 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHH
Confidence            588999999999999999988643

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.29  E-value=6e-05  Score=54.07  Aligned_cols=22  Identities=27%  Similarity=0.546  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCC
Q 036363           21 TVVLVGHTGNGKSATGNSILGR   42 (240)
Q Consensus        21 ~i~lvG~~g~GKSTlin~l~g~   42 (240)
                      -|+|+||+|||||||++.|+..
T Consensus         3 pIvl~GpsG~GK~tl~~~L~~~   24 (186)
T d1gkya_           3 PIVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHh
Confidence            3899999999999999999764

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.28  E-value=4.9e-05  Score=55.46  Aligned_cols=24  Identities=21%  Similarity=0.343  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCC
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRR   43 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~   43 (240)
                      ..|+|+||+|||||||++.|+...
T Consensus         3 ~livi~GPSG~GK~tl~~~L~~~~   26 (205)
T d1s96a_           3 TLYIVSAPSGAGKSSLIQALLKTQ   26 (205)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhC
Confidence            678999999999999999997643

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.27  E-value=7.3e-05  Score=53.04  Aligned_cols=22  Identities=23%  Similarity=0.483  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 036363           20 RTVVLVGHTGNGKSATGNSILG   41 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g   41 (240)
                      +.|+|.|++||||||+++.|..
T Consensus         2 kiI~i~G~~GsGKsT~~~~L~~   23 (190)
T d1khta_           2 KVVVVTGVPGVGSTTSSQLAMD   23 (190)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            6899999999999999999863

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.25  E-value=7.3e-05  Score=53.26  Aligned_cols=23  Identities=30%  Similarity=0.655  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 036363           20 RTVVLVGHTGNGKSATGNSILGR   42 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~   42 (240)
                      +-|+|+||+|+|||||++.|+..
T Consensus         4 k~ivl~Gpsg~GK~tl~~~L~~~   26 (178)
T d1kgda_           4 KTLVLLGAHGVGRRHIKNTLITK   26 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHHh
Confidence            46899999999999999999854

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.24  E-value=8.1e-05  Score=52.86  Aligned_cols=21  Identities=33%  Similarity=0.651  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhC
Q 036363           21 TVVLVGHTGNGKSATGNSILG   41 (240)
Q Consensus        21 ~i~lvG~~g~GKSTlin~l~g   41 (240)
                      +|+|+|++||||||+.+.|+.
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~   22 (182)
T d1zina1           2 NLVLMGLPGAGKGTQAEKIVA   22 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999854

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.24  E-value=5.8e-05  Score=52.96  Aligned_cols=22  Identities=41%  Similarity=0.631  Sum_probs=19.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 036363           20 RTVVLVGHTGNGKSATGNSILG   41 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g   41 (240)
                      ++|+|+|++||||||+.+.|..
T Consensus         2 p~IvliG~~G~GKSTig~~La~   23 (165)
T d2iyva1           2 PKAVLVGLPGSGKSTIGRRLAK   23 (165)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHH
Confidence            4688999999999999998863

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=97.23  E-value=6.7e-05  Score=52.45  Aligned_cols=21  Identities=29%  Similarity=0.623  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhC
Q 036363           21 TVVLVGHTGNGKSATGNSILG   41 (240)
Q Consensus        21 ~i~lvG~~g~GKSTlin~l~g   41 (240)
                      +|+|+|++||||||+.+.|+.
T Consensus         2 ~I~liG~~GsGKsTi~k~La~   22 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAK   22 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999854

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.23  E-value=7e-05  Score=53.72  Aligned_cols=23  Identities=22%  Similarity=0.336  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 036363           20 RTVVLVGHTGNGKSATGNSILGR   42 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~   42 (240)
                      .+|+|+|++||||||+.+.|...
T Consensus         4 m~I~i~GppGsGKsT~a~~La~~   26 (189)
T d1zaka1           4 LKVMISGAPASGKGTQCELIKTK   26 (189)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            67999999999999999998643

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.22  E-value=0.00012  Score=52.68  Aligned_cols=25  Identities=20%  Similarity=0.449  Sum_probs=22.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCC
Q 036363           18 GVRTVVLVGHTGNGKSATGNSILGR   42 (240)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlin~l~g~   42 (240)
                      ....|+|+|++||||||+...|+..
T Consensus         7 ~~~iI~i~GppGSGKsT~a~~La~~   31 (196)
T d1ukza_           7 QVSVIFVLGGPGAGKGTQCEKLVKD   31 (196)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            3478999999999999999999754

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.21  E-value=9.8e-05  Score=53.61  Aligned_cols=22  Identities=23%  Similarity=0.412  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 036363           20 RTVVLVGHTGNGKSATGNSILG   41 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g   41 (240)
                      ..|+++|.+|+||||+.+.|+.
T Consensus         3 ~li~l~GlpgsGKSTla~~L~~   24 (213)
T d1bifa1           3 TLIVMVGLPARGKTYISKKLTR   24 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999984

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=97.18  E-value=0.00011  Score=51.50  Aligned_cols=24  Identities=25%  Similarity=0.353  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCC
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRR   43 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~   43 (240)
                      +.|+|.|++||||||+.+.|....
T Consensus         4 kiI~l~G~~GsGKsTva~~L~~~l   27 (178)
T d1qhxa_           4 RMIILNGGSSAGKSGIVRCLQSVL   27 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHc
Confidence            578888999999999999997653

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.18  E-value=0.00012  Score=52.68  Aligned_cols=22  Identities=27%  Similarity=0.453  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 036363           20 RTVVLVGHTGNGKSATGNSILG   41 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g   41 (240)
                      .+|+|+|++||||||....|+.
T Consensus         2 ~iI~i~GppGSGKsT~a~~La~   23 (194)
T d1teva_           2 LVVFVLGGPGAGKGTQCARIVE   23 (194)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            6899999999999999999874

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=97.17  E-value=0.0001  Score=52.41  Aligned_cols=22  Identities=32%  Similarity=0.678  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCC
Q 036363           21 TVVLVGHTGNGKSATGNSILGR   42 (240)
Q Consensus        21 ~i~lvG~~g~GKSTlin~l~g~   42 (240)
                      +|+|+|++||||||+.+.|+..
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~   23 (182)
T d1s3ga1           2 NIVLMGLPGAGKGTQADRIVEK   23 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999998754

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.17  E-value=9.9e-05  Score=53.09  Aligned_cols=21  Identities=38%  Similarity=0.558  Sum_probs=18.9

Q ss_pred             EEEEcCCCCcHHHHHHHHhCC
Q 036363           22 VVLVGHTGNGKSATGNSILGR   42 (240)
Q Consensus        22 i~lvG~~g~GKSTlin~l~g~   42 (240)
                      |+|+||+|||||||++.|+..
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~   23 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQE   23 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999998653

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=97.11  E-value=0.00016  Score=51.93  Aligned_cols=24  Identities=21%  Similarity=0.439  Sum_probs=21.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCC
Q 036363           19 VRTVVLVGHTGNGKSATGNSILGR   42 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g~   42 (240)
                      ..+|+|+|++||||||+...|+..
T Consensus         6 ~mrIiliG~PGSGKtT~a~~La~~   29 (189)
T d2ak3a1           6 LLRAAIMGAPGSGKGTVSSRITKH   29 (189)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceeEEEECCCCCCHHHHHHHHHHH
Confidence            479999999999999999999853

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.10  E-value=0.00014  Score=51.62  Aligned_cols=22  Identities=27%  Similarity=0.537  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCC
Q 036363           21 TVVLVGHTGNGKSATGNSILGR   42 (240)
Q Consensus        21 ~i~lvG~~g~GKSTlin~l~g~   42 (240)
                      +|+|+|++||||||+.+.|+..
T Consensus         2 ~I~i~G~pGsGKsT~a~~La~~   23 (181)
T d2cdna1           2 RVLLLGPPGAGKGTQAVKLAEK   23 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            7899999999999999998643

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.09  E-value=0.00014  Score=51.59  Aligned_cols=21  Identities=24%  Similarity=0.466  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhC
Q 036363           21 TVVLVGHTGNGKSATGNSILG   41 (240)
Q Consensus        21 ~i~lvG~~g~GKSTlin~l~g   41 (240)
                      +|+|+|++||||||..+.|+.
T Consensus         2 ~I~i~G~pGSGKsT~~~~La~   22 (179)
T d1e4va1           2 RIILLGAPVAGKGTQAQFIME   22 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999998864

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=97.08  E-value=0.00011  Score=57.36  Aligned_cols=25  Identities=32%  Similarity=0.480  Sum_probs=22.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCCC
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRRA   44 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~~   44 (240)
                      .+|+++|++|||||||+|+|++..+
T Consensus       167 ~nili~G~tgSGKTT~l~al~~~i~  191 (323)
T d1g6oa_         167 KNVIVCGGTGSGKTTYIKSIMEFIP  191 (323)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred             CCEEEEeeccccchHHHHHHhhhcc
Confidence            4699999999999999999997653

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=97.03  E-value=0.00019  Score=51.03  Aligned_cols=22  Identities=23%  Similarity=0.317  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 036363           20 RTVVLVGHTGNGKSATGNSILG   41 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g   41 (240)
                      ..|+|.|.+||||||+++.|..
T Consensus         2 kiivi~G~~GsGKTT~~~~La~   23 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5678899999999999999964

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.03  E-value=0.00018  Score=51.11  Aligned_cols=23  Identities=30%  Similarity=0.549  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 036363           20 RTVVLVGHTGNGKSATGNSILGR   42 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~   42 (240)
                      -+|+|+|++||||||+.+.|+..
T Consensus         3 mrIvl~G~pGSGKtT~a~~La~~   25 (180)
T d1akya1           3 IRMVLIGPPGAGKGTQAPNLQER   25 (180)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            57899999999999999999743

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=97.03  E-value=0.0061  Score=48.36  Aligned_cols=22  Identities=32%  Similarity=0.496  Sum_probs=18.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 036363           20 RTVVLVGHTGNGKSATGNSILG   41 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g   41 (240)
                      -+++|||++|+|||+++..|+.
T Consensus        44 ~n~llvG~~GvGKtaiv~~la~   65 (387)
T d1qvra2          44 NNPVLIGEPGVGKTAIVEGLAQ   65 (387)
T ss_dssp             CCCEEEECTTSCHHHHHHHHHH
T ss_pred             CCCeEECCCCCCHHHHHHHHHH
Confidence            4689999999999999977664

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.01  E-value=0.00012  Score=52.40  Aligned_cols=22  Identities=32%  Similarity=0.425  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 036363           20 RTVVLVGHTGNGKSATGNSILG   41 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g   41 (240)
                      ..|.|+|++||||||+.+.|.-
T Consensus        20 ~vI~L~G~pGSGKTTiAk~La~   41 (195)
T d1x6va3          20 CTVWLTGLSGAGKTTVSMALEE   41 (195)
T ss_dssp             EEEEEESSCHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            6888999999999999999864

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.01  E-value=0.00015  Score=54.67  Aligned_cols=25  Identities=24%  Similarity=0.456  Sum_probs=21.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCCC
Q 036363           19 VRTVVLVGHTGNGKSATGNSILGRR   43 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g~~   43 (240)
                      +..|+|.||+|+|||||.+.|++..
T Consensus        32 P~~ilL~GpPGtGKT~la~~la~~~   56 (273)
T d1gvnb_          32 PTAFLLGGQPGSGKTSLRSAIFEET   56 (273)
T ss_dssp             CEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHh
Confidence            3679999999999999999998653

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.00  E-value=0.0002  Score=51.44  Aligned_cols=23  Identities=26%  Similarity=0.589  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 036363           20 RTVVLVGHTGNGKSATGNSILGR   42 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~   42 (240)
                      ..|.|+|++||||||+...|+..
T Consensus         9 ~iI~l~G~pGSGKsT~a~~La~~   31 (194)
T d3adka_           9 KIIFVVGGPGSGKGTQCEKIVQK   31 (194)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            68999999999999999999754

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=96.98  E-value=0.00019  Score=50.42  Aligned_cols=22  Identities=23%  Similarity=0.536  Sum_probs=19.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 036363           20 RTVVLVGHTGNGKSATGNSILG   41 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g   41 (240)
                      ..|.|+|++||||||+.+.|+.
T Consensus         3 ~~Iil~G~~GsGKSTia~~LA~   24 (170)
T d1e6ca_           3 EPIFMVGARGCGMTTVGRELAR   24 (170)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHH
T ss_pred             CCEEEECCCCCCHHHHHHHHHH
Confidence            4578999999999999999863

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=96.85  E-value=5.2e-05  Score=54.65  Aligned_cols=20  Identities=35%  Similarity=0.504  Sum_probs=17.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 036363           21 TVVLVGHTGNGKSATGNSIL   40 (240)
Q Consensus        21 ~i~lvG~~g~GKSTlin~l~   40 (240)
                      ..+|+|+|||||||++.+|.
T Consensus        26 ~tvi~G~NGsGKStil~Ai~   45 (222)
T d1qhla_          26 VTTLSGGNGAGKSTTMAAFV   45 (222)
T ss_dssp             HHHHHSCCSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHH
Confidence            55788999999999999984

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=96.84  E-value=0.0015  Score=44.96  Aligned_cols=29  Identities=24%  Similarity=0.290  Sum_probs=24.3

Q ss_pred             CCCCceEEEEEcCCCCcHHHHHHHHhCCCCc
Q 036363           15 PSNGVRTVVLVGHTGNGKSATGNSILGRRAF   45 (240)
Q Consensus        15 ~~~~~~~i~lvG~~g~GKSTlin~l~g~~~~   45 (240)
                      .+|  ..|.|-|+-|||||||.+.|+.....
T Consensus        31 ~~g--~ii~L~G~LGaGKTtfvr~~~~~lg~   59 (158)
T d1htwa_          31 EKA--IMVYLNGDLGAGKTTLTRGMLQGIGH   59 (158)
T ss_dssp             SSC--EEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred             CCC--eEEEEecCCCccHHHHHHHHHhhccc
Confidence            455  89999999999999999999865543

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=96.83  E-value=0.00037  Score=49.82  Aligned_cols=23  Identities=22%  Similarity=0.352  Sum_probs=20.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhC
Q 036363           19 VRTVVLVGHTGNGKSATGNSILG   41 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g   41 (240)
                      +..|+|.|.+||||||+.+.|..
T Consensus         3 p~IIgitG~~gSGKstva~~l~~   25 (191)
T d1uf9a_           3 PIIIGITGNIGSGKSTVAALLRS   25 (191)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            47899999999999999998853

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.80  E-value=0.00038  Score=49.93  Aligned_cols=24  Identities=29%  Similarity=0.318  Sum_probs=21.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCC
Q 036363           19 VRTVVLVGHTGNGKSATGNSILGR   42 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g~   42 (240)
                      +..|+|-|..||||||+++.|...
T Consensus         9 p~~I~ieG~~GsGKTTl~~~L~~~   32 (197)
T d2vp4a1           9 PFTVLIEGNIGSGKTTYLNHFEKY   32 (197)
T ss_dssp             CEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHH
Confidence            479999999999999999998753

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.77  E-value=0.0019  Score=47.65  Aligned_cols=32  Identities=22%  Similarity=0.321  Sum_probs=23.7

Q ss_pred             ccCCccccCCCCCceEEEEEcCCCCcHHHHHHHHh
Q 036363            6 IDDDCELTSPSNGVRTVVLVGHTGNGKSATGNSIL   40 (240)
Q Consensus         6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKSTlin~l~   40 (240)
                      +.+++++....   ..++|.|||.+||||+++++.
T Consensus        31 VpNdi~l~~~~---~~~iiTGpN~~GKSt~lk~i~   62 (234)
T d1wb9a2          31 IANPLNLSPQR---RMLIITGPNMGGKSTYMRQTA   62 (234)
T ss_dssp             CCEEEEECSSS---CEEEEECCTTSSHHHHHHHHH
T ss_pred             cceeEEECCCc---eEEEEeccCchhhHHHHHHHH
Confidence            44455554322   578999999999999999974

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.73  E-value=0.00022  Score=54.90  Aligned_cols=20  Identities=35%  Similarity=0.527  Sum_probs=17.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 036363           21 TVVLVGHTGNGKSATGNSIL   40 (240)
Q Consensus        21 ~i~lvG~~g~GKSTlin~l~   40 (240)
                      .-+|+|+|||||||++.+|.
T Consensus        26 lnvlvG~NgsGKS~iL~Ai~   45 (308)
T d1e69a_          26 VTAIVGPNGSGKSNIIDAIK   45 (308)
T ss_dssp             EEEEECCTTTCSTHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHH
Confidence            55899999999999999883

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=96.69  E-value=0.0004  Score=51.50  Aligned_cols=24  Identities=25%  Similarity=0.444  Sum_probs=21.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCC
Q 036363           19 VRTVVLVGHTGNGKSATGNSILGR   42 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g~   42 (240)
                      ...++|.||+|+||||+++++++.
T Consensus        35 ~~~~Ll~GPpG~GKTtla~~la~~   58 (239)
T d1ixsb2          35 LEHLLLFGPPGLGKTTLAHVIAHE   58 (239)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            357899999999999999999864

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.66  E-value=0.00061  Score=50.77  Aligned_cols=27  Identities=22%  Similarity=0.343  Sum_probs=22.9

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhCCC
Q 036363           17 NGVRTVVLVGHTGNGKSATGNSILGRR   43 (240)
Q Consensus        17 ~~~~~i~lvG~~g~GKSTlin~l~g~~   43 (240)
                      +....++|.||+|+||||++++|+...
T Consensus        50 ~~~~~lll~GPpG~GKTt~a~~la~~~   76 (253)
T d1sxja2          50 GVFRAAMLYGPPGIGKTTAAHLVAQEL   76 (253)
T ss_dssp             TSCSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence            334689999999999999999998654

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.64  E-value=0.00043  Score=53.59  Aligned_cols=23  Identities=22%  Similarity=0.523  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 036363           20 RTVVLVGHTGNGKSATGNSILGR   42 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~   42 (240)
                      ..|+++||+|+|||.|.++|+..
T Consensus        50 ~~iLl~GPpG~GKT~lAkalA~~   72 (309)
T d1ofha_          50 KNILMIGPTGVGKTEIARRLAKL   72 (309)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHhhc
Confidence            57899999999999999999853

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=96.59  E-value=0.00081  Score=51.81  Aligned_cols=25  Identities=20%  Similarity=0.240  Sum_probs=21.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhC
Q 036363           17 NGVRTVVLVGHTGNGKSATGNSILG   41 (240)
Q Consensus        17 ~~~~~i~lvG~~g~GKSTlin~l~g   41 (240)
                      ..+..|+|.|++|||||||.+.|..
T Consensus        78 k~P~iIGIaG~sgSGKSTla~~L~~  102 (308)
T d1sq5a_          78 RIPYIISIAGSVAVGKSTTARVLQA  102 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCCCCcHHHHHHHH
Confidence            4568999999999999999988754

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=96.57  E-value=0.00056  Score=50.60  Aligned_cols=23  Identities=30%  Similarity=0.465  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 036363           20 RTVVLVGHTGNGKSATGNSILGR   42 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~   42 (240)
                      ..+.|.||+|+||||+.+.|+..
T Consensus        36 ~~~L~~GPpGtGKT~lA~~la~~   58 (238)
T d1in4a2          36 DHVLLAGPPGLGKTTLAHIIASE   58 (238)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHhc
Confidence            46899999999999999998754

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.55  E-value=0.00071  Score=50.51  Aligned_cols=25  Identities=28%  Similarity=0.364  Sum_probs=21.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCC
Q 036363           18 GVRTVVLVGHTGNGKSATGNSILGR   42 (240)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlin~l~g~   42 (240)
                      +...|.|.||+|+|||+++++|++.
T Consensus        39 p~~~vLL~GppGtGKT~la~alA~~   63 (246)
T d1d2na_          39 PLVSVLLEGPPHSGKTALAAKIAEE   63 (246)
T ss_dssp             SEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHhhc
Confidence            3467999999999999999999753

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=96.51  E-value=0.0043  Score=45.35  Aligned_cols=21  Identities=24%  Similarity=0.224  Sum_probs=18.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 036363           20 RTVVLVGHTGNGKSATGNSIL   40 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~   40 (240)
                      ..++|.|||.+||||+++++.
T Consensus        36 ~~~iiTGpN~~GKSt~lk~i~   56 (224)
T d1ewqa2          36 ELVLITGPNMAGKSTFLRQTA   56 (224)
T ss_dssp             CEEEEESCSSSSHHHHHHHHH
T ss_pred             cEEEEECCCccccchhhhhhH
Confidence            368999999999999999864

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.51  E-value=0.00082  Score=49.44  Aligned_cols=23  Identities=17%  Similarity=0.387  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 036363           20 RTVVLVGHTGNGKSATGNSILGR   42 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~   42 (240)
                      ..+.|.||+|+||||+++.|+..
T Consensus        46 ~~lll~Gp~G~GKTtla~~iak~   68 (231)
T d1iqpa2          46 PHLLFAGPPGVGKTTAALALARE   68 (231)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            46899999999999999998764

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.47  E-value=0.00092  Score=50.03  Aligned_cols=25  Identities=24%  Similarity=0.344  Sum_probs=21.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhCC
Q 036363           18 GVRTVVLVGHTGNGKSATGNSILGR   42 (240)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlin~l~g~   42 (240)
                      ....+.|.|++|+||||+++.|+..
T Consensus        42 ~~~~lll~GppGtGKT~l~~~l~~~   66 (276)
T d1fnna2          42 HYPRATLLGRPGTGKTVTLRKLWEL   66 (276)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHH
Confidence            3468999999999999999998754

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=96.45  E-value=0.00085  Score=48.82  Aligned_cols=23  Identities=17%  Similarity=0.359  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 036363           20 RTVVLVGHTGNGKSATGNSILGR   42 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~   42 (240)
                      +.|+|.||+||||||+...|...
T Consensus         4 piI~I~GppGSGKgT~ak~La~~   26 (225)
T d1ckea_           4 PVITIDGPSGAGKGTLCKAMAEA   26 (225)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            48899999999999999998754

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.41  E-value=0.00067  Score=54.35  Aligned_cols=20  Identities=30%  Similarity=0.484  Sum_probs=17.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 036363           21 TVVLVGHTGNGKSATGNSIL   40 (240)
Q Consensus        21 ~i~lvG~~g~GKSTlin~l~   40 (240)
                      .-+|+|+||+||||++.+|.
T Consensus        27 l~~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          27 FTSIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            45688999999999999983

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.35  E-value=0.0013  Score=47.74  Aligned_cols=25  Identities=24%  Similarity=0.279  Sum_probs=21.9

Q ss_pred             CCCCceEEEEEcCCCCcHHHHHHHHhC
Q 036363           15 PSNGVRTVVLVGHTGNGKSATGNSILG   41 (240)
Q Consensus        15 ~~~~~~~i~lvG~~g~GKSTlin~l~g   41 (240)
                      ..|  ..|.|.|.+||||||+.+.|..
T Consensus        22 ~kg--~vIwltGlsGsGKTTia~~L~~   46 (208)
T d1m7ga_          22 QRG--LTIWLTGLSASGKSTLAVELEH   46 (208)
T ss_dssp             SSC--EEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCC--eEEEEECCCCCCHHHHHHHHHH
Confidence            445  8999999999999999999864

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.34  E-value=0.0011  Score=48.32  Aligned_cols=23  Identities=22%  Similarity=0.315  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 036363           20 RTVVLVGHTGNGKSATGNSILGR   42 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~   42 (240)
                      .+|+|-||+||||||....|+..
T Consensus         4 i~IaIdGp~GsGKgT~ak~La~~   26 (223)
T d1q3ta_           4 IQIAIDGPASSGKSTVAKIIAKD   26 (223)
T ss_dssp             CEEEEECSSCSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            57888899999999999999754

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=96.31  E-value=0.0012  Score=47.73  Aligned_cols=21  Identities=33%  Similarity=0.430  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 036363           20 RTVVLVGHTGNGKSATGNSIL   40 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~   40 (240)
                      ..|+|.|..||||||+.+.|.
T Consensus         3 ~iIgITG~igSGKStv~~~l~   23 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFT   23 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHH
Confidence            679999999999999999875

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=96.31  E-value=0.0012  Score=47.85  Aligned_cols=21  Identities=38%  Similarity=0.556  Sum_probs=19.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 036363           20 RTVVLVGHTGNGKSATGNSIL   40 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~   40 (240)
                      ..|+|.|..||||||+.+.|.
T Consensus         4 ~iIgitG~igSGKStv~~~l~   24 (208)
T d1vhta_           4 YIVALTGGIGSGKSTVANAFA   24 (208)
T ss_dssp             EEEEEECCTTSCHHHHHHHHH
T ss_pred             EEEEEECCCcCCHHHHHHHHH
Confidence            489999999999999999875

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.30  E-value=0.0015  Score=49.60  Aligned_cols=25  Identities=28%  Similarity=0.331  Sum_probs=21.2

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHh
Q 036363           16 SNGVRTVVLVGHTGNGKSATGNSIL   40 (240)
Q Consensus        16 ~~~~~~i~lvG~~g~GKSTlin~l~   40 (240)
                      ...+..|+|-|+.|||||||...|.
T Consensus        24 ~~~P~iIGi~G~qGSGKSTl~~~l~   48 (286)
T d1odfa_          24 NKCPLFIFFSGPQGSGKSFTSIQIY   48 (286)
T ss_dssp             CCSCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCCEEEEeECCCCCCHHHHHHHHH
Confidence            3445899999999999999998775

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.30  E-value=0.0012  Score=48.64  Aligned_cols=23  Identities=22%  Similarity=0.365  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 036363           20 RTVVLVGHTGNGKSATGNSILGR   42 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~   42 (240)
                      ..+.|.||+|+||||+++.|+..
T Consensus        34 ~~lll~Gp~G~GKTtl~~~i~~~   56 (237)
T d1sxjd2          34 PHMLFYGPPGTGKTSTILALTKE   56 (237)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCChHHHHHHHHHH
Confidence            45899999999999999999754

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=96.23  E-value=0.0014  Score=49.15  Aligned_cols=23  Identities=35%  Similarity=0.677  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 036363           20 RTVVLVGHTGNGKSATGNSILGR   42 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~   42 (240)
                      ..+++.||+|+|||+++++|+..
T Consensus        46 ~~iLL~GppGtGKT~la~~iA~~   68 (256)
T d1lv7a_          46 KGVLMVGPPGTGKTLLAKAIAGE   68 (256)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEeeCCCCCCccHHHHHHHHH
Confidence            67999999999999999999853

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.22  E-value=0.0009  Score=49.36  Aligned_cols=24  Identities=21%  Similarity=0.320  Sum_probs=21.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCC
Q 036363           19 VRTVVLVGHTGNGKSATGNSILGR   42 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g~   42 (240)
                      ...|+|-|+.||||||+++.|...
T Consensus         2 ~k~I~ieG~dGsGKST~~~~L~~~   25 (241)
T d1p5zb_           2 IKKISIEGNIAAGKSTFVNILKQL   25 (241)
T ss_dssp             CEEEEEECSTTSSHHHHHTTTGGG
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHH
Confidence            378999999999999999988764

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.15  E-value=0.0019  Score=48.50  Aligned_cols=23  Identities=26%  Similarity=0.554  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 036363           20 RTVVLVGHTGNGKSATGNSILGR   42 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~   42 (240)
                      .-|+|.||+|+|||+++++++..
T Consensus        39 ~giLL~GppGtGKT~l~~ala~~   61 (258)
T d1e32a2          39 RGILLYGPPGTGKTLIARAVANE   61 (258)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceeEEecCCCCCchHHHHHHHHH
Confidence            67999999999999999999864

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.15  E-value=0.0016  Score=46.46  Aligned_cols=23  Identities=35%  Similarity=0.543  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 036363           20 RTVVLVGHTGNGKSATGNSILGR   42 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~   42 (240)
                      .+++|||++|+|||+++..|+..
T Consensus        44 ~n~lLvG~pGVGKTalv~~LA~r   66 (195)
T d1jbka_          44 NNPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEecCCcccHHHHHHHHHH
Confidence            58999999999999999888754

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=96.12  E-value=0.0013  Score=52.67  Aligned_cols=23  Identities=35%  Similarity=0.434  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 036363           20 RTVVLVGHTGNGKSATGNSILGR   42 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~   42 (240)
                      --|++.||+|+||||++.+++..
T Consensus       159 GliLvtGpTGSGKSTTl~~~l~~  181 (401)
T d1p9ra_         159 GIILVTGPTGSGKSTTLYAGLQE  181 (401)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHH
T ss_pred             ceEEEEcCCCCCccHHHHHHhhh
Confidence            48999999999999999999864

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.12  E-value=0.0013  Score=53.41  Aligned_cols=22  Identities=23%  Similarity=0.579  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 036363           20 RTVVLVGHTGNGKSATGNSILG   41 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g   41 (240)
                      .+|+++||||+|||-|.++|+.
T Consensus        50 sNILliGPTGvGKTlLAr~LAk   71 (443)
T d1g41a_          50 KNILMIGPTGVGKTEIARRLAK   71 (443)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             ccEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999999976

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=96.10  E-value=0.0017  Score=48.36  Aligned_cols=23  Identities=35%  Similarity=0.641  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 036363           20 RTVVLVGHTGNGKSATGNSILGR   42 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~   42 (240)
                      .-|++.||+|+|||+++++|++.
T Consensus        43 ~giLl~GppGtGKT~la~aia~~   65 (247)
T d1ixza_          43 KGVLLVGPPGVGKTHLARAVAGE   65 (247)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEecCCCCChhHHHHHHHHH
Confidence            56999999999999999999864

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=96.09  E-value=0.0016  Score=48.67  Aligned_cols=22  Identities=18%  Similarity=0.208  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 036363           20 RTVVLVGHTGNGKSATGNSILG   41 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g   41 (240)
                      ..|+|.|+.|+|||||++.++.
T Consensus        30 ~~i~i~G~~G~GKTsLl~~~~~   51 (283)
T d2fnaa2          30 PITLVLGLRRTGKSSIIKIGIN   51 (283)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEEcCCCCcHHHHHHHHHH
Confidence            6889999999999999998863

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.08  E-value=0.0016  Score=46.92  Aligned_cols=21  Identities=24%  Similarity=0.439  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhC
Q 036363           21 TVVLVGHTGNGKSATGNSILG   41 (240)
Q Consensus        21 ~i~lvG~~g~GKSTlin~l~g   41 (240)
                      .|+|-|..||||||+++.|..
T Consensus         2 lI~ieG~dGsGKST~~~~L~~   22 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSG   22 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            489999999999999998874

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.06  E-value=0.002  Score=46.57  Aligned_cols=22  Identities=27%  Similarity=0.569  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 036363           20 RTVVLVGHTGNGKSATGNSILG   41 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g   41 (240)
                      .-|+|-|..||||||+++.|..
T Consensus         3 kfIviEG~dGsGKsT~~~~L~~   24 (210)
T d4tmka_           3 KYIVIEGLEGAGKTTARNVVVE   24 (210)
T ss_dssp             CEEEEEECTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            6799999999999999999864

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.04  E-value=0.0022  Score=46.52  Aligned_cols=22  Identities=27%  Similarity=0.413  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 036363           20 RTVVLVGHTGNGKSATGNSILG   41 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g   41 (240)
                      .-|+|-|+.||||||+++.|..
T Consensus         4 ~lI~ieG~dGsGKsT~~~~L~~   25 (209)
T d1nn5a_           4 ALIVLEGVDRAGKSTQSRKLVE   25 (209)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            6799999999999999988754

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.02  E-value=0.0017  Score=48.13  Aligned_cols=23  Identities=26%  Similarity=0.456  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 036363           20 RTVVLVGHTGNGKSATGNSILGR   42 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~   42 (240)
                      ..+.|.||+|+||||++..++..
T Consensus        34 ~~lll~Gp~G~GKTt~~~~la~~   56 (252)
T d1sxje2          34 PHLLLYGPNGTGKKTRCMALLES   56 (252)
T ss_dssp             CCEEEECSTTSSHHHHHHTHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHh
Confidence            46899999999999999988753

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=96.02  E-value=0.00097  Score=50.72  Aligned_cols=21  Identities=19%  Similarity=0.393  Sum_probs=16.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 036363           20 RTVVLVGHTGNGKSATGNSIL   40 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~   40 (240)
                      ..|+|.|.+||||||+.+.|.
T Consensus         5 pIIgIaG~SGSGKTTva~~l~   25 (288)
T d1a7ja_           5 PIISVTGSSGAGTSTVKHTFD   25 (288)
T ss_dssp             CEEEEESCC---CCTHHHHHH
T ss_pred             CEEEEECCCCCcHHHHHHHHH
Confidence            589999999999999998764

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.02  E-value=0.0019  Score=48.62  Aligned_cols=23  Identities=35%  Similarity=0.556  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 036363           20 RTVVLVGHTGNGKSATGNSILGR   42 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~   42 (240)
                      .+++|||++|+|||+++..++..
T Consensus        40 ~n~lLVG~~GvGKTalv~~la~r   62 (268)
T d1r6bx2          40 NNPLLVGESGVGKTAIAEGLAWR   62 (268)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCcEEECCCCCcHHHHHHHHHHH
Confidence            68999999999999999998754

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.99  E-value=0.0016  Score=49.09  Aligned_cols=24  Identities=25%  Similarity=0.428  Sum_probs=21.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCC
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRR   43 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~   43 (240)
                      ..|+|.||+|+|||+|++++++..
T Consensus        42 ~giLL~Gp~GtGKT~l~~ala~~~   65 (265)
T d1r7ra3          42 KGVLFYGPPGCGKTLLAKAIANEC   65 (265)
T ss_dssp             CEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred             CeEEEECCCCCcchhHHHHHHHHh
Confidence            679999999999999999998654

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.99  E-value=0.0016  Score=46.90  Aligned_cols=27  Identities=11%  Similarity=0.167  Sum_probs=23.0

Q ss_pred             CCCCCceEEEEEcCCCCcHHHHHHHHhCC
Q 036363           14 SPSNGVRTVVLVGHTGNGKSATGNSILGR   42 (240)
Q Consensus        14 ~~~~~~~~i~lvG~~g~GKSTlin~l~g~   42 (240)
                      +++|  ..+.|.|++|+|||+|...++..
T Consensus        20 i~~G--~v~~i~G~~GsGKT~l~l~la~~   46 (242)
T d1n0wa_          20 IETG--SITEMFGEFRTGKTQICHTLAVT   46 (242)
T ss_dssp             EETT--SEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcCC--EEEEEEeCCCCCHHHHHHHHHHH
Confidence            4566  89999999999999999888743

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.92  E-value=0.0025  Score=46.91  Aligned_cols=23  Identities=22%  Similarity=0.235  Sum_probs=20.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhC
Q 036363           19 VRTVVLVGHTGNGKSATGNSILG   41 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g   41 (240)
                      +..|+|=|..||||||+++.|..
T Consensus         2 pk~IviEG~~GsGKST~~~~L~~   24 (241)
T d2ocpa1           2 PRRLSIEGNIAVGKSTFVKLLTK   24 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHHH
Confidence            47899999999999999999974

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.92  E-value=0.002  Score=47.03  Aligned_cols=23  Identities=17%  Similarity=0.385  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 036363           20 RTVVLVGHTGNGKSATGNSILGR   42 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~   42 (240)
                      ..+.|.||+|+||||+++.++..
T Consensus        37 ~~~ll~Gp~G~GKTt~a~~la~~   59 (224)
T d1sxjb2          37 PHMIISGMPGIGKTTSVHCLAHE   59 (224)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCchhhHHHHHHH
Confidence            45899999999999999988654

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.88  E-value=0.0022  Score=46.82  Aligned_cols=23  Identities=22%  Similarity=0.382  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 036363           20 RTVVLVGHTGNGKSATGNSILGR   42 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~   42 (240)
                      ..+.|.||+|+||||++..|+..
T Consensus        36 ~~lLl~Gp~G~GKttl~~~la~~   58 (227)
T d1sxjc2          36 PHLLFYGPPGTGKTSTIVALARE   58 (227)
T ss_dssp             CCEEEECSSSSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCChhHHHHHHHHH
Confidence            35889999999999999999754

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=95.85  E-value=0.0038  Score=48.17  Aligned_cols=24  Identities=25%  Similarity=0.369  Sum_probs=20.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhC
Q 036363           18 GVRTVVLVGHTGNGKSATGNSILG   41 (240)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlin~l~g   41 (240)
                      +.-.+.++||+|+|||.|.++|+.
T Consensus        51 p~~~~lf~Gp~GvGKT~lak~la~   74 (315)
T d1r6bx3          51 PVGSFLFAGPTGVGKTEVTVQLSK   74 (315)
T ss_dssp             CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CceEEEEECCCcchhHHHHHHHHh
Confidence            335899999999999999999874

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=95.83  E-value=0.0023  Score=50.40  Aligned_cols=23  Identities=22%  Similarity=0.348  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 036363           20 RTVVLVGHTGNGKSATGNSILGR   42 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~   42 (240)
                      ..+++.||+|+|||+|.++|++.
T Consensus       155 ~~~~~~g~~~~gk~~~~~~~~~~  177 (362)
T d1svma_         155 RYWLFKGPIDSGKTTLAAALLEL  177 (362)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            79999999999999999998754

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=95.78  E-value=0.0029  Score=46.62  Aligned_cols=22  Identities=27%  Similarity=0.496  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 036363           20 RTVVLVGHTGNGKSATGNSILG   41 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g   41 (240)
                      ..|+|.|..||||||+.+.|..
T Consensus         2 ~iIgiTG~igSGKsTva~~l~e   23 (241)
T d1deka_           2 KLIFLSGVKRSGKDTTADFIMS   23 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            6799999999999999999854

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.76  E-value=0.0006  Score=50.63  Aligned_cols=22  Identities=18%  Similarity=0.371  Sum_probs=18.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 036363           20 RTVVLVGHTGNGKSATGNSILG   41 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g   41 (240)
                      ..++|.|++|+||||+++.++.
T Consensus        35 ~~~Ll~Gp~G~GKtt~a~~~~~   56 (239)
T d1njfa_          35 HAYLFSGTRGVGKTSIARLLAK   56 (239)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHH
T ss_pred             eeEEEECCCCCcHHHHHHHHHH
Confidence            4588999999999999998754

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=95.72  E-value=0.0016  Score=48.92  Aligned_cols=21  Identities=24%  Similarity=0.343  Sum_probs=17.8

Q ss_pred             EEEEcCCCCcHHHHHHHHhCC
Q 036363           22 VVLVGHTGNGKSATGNSILGR   42 (240)
Q Consensus        22 i~lvG~~g~GKSTlin~l~g~   42 (240)
                      +.+.||+|+||||+++.++..
T Consensus        49 l~l~GppGtGKT~l~~~l~~~   69 (287)
T d1w5sa2          49 YGSIGRVGIGKTTLAKFTVKR   69 (287)
T ss_dssp             EECTTCCSSSHHHHHHHHHHH
T ss_pred             EEeECCCCCCHHHHHHHHHHH
Confidence            445699999999999998864

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=95.61  E-value=0.0029  Score=49.93  Aligned_cols=22  Identities=27%  Similarity=0.614  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 036363           20 RTVVLVGHTGNGKSATGNSILG   41 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g   41 (240)
                      .++.++||||+|||-+.++|+.
T Consensus        69 ~niLfiGPTGvGKTElAk~LA~   90 (364)
T d1um8a_          69 SNILLIGPTGSGKTLMAQTLAK   90 (364)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             cceeeeCCCCccHHHHHHHHHh
Confidence            5899999999999999999864

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.59  E-value=0.0026  Score=46.69  Aligned_cols=27  Identities=19%  Similarity=0.192  Sum_probs=23.1

Q ss_pred             CCCCCceEEEEEcCCCCcHHHHHHHHhCC
Q 036363           14 SPSNGVRTVVLVGHTGNGKSATGNSILGR   42 (240)
Q Consensus        14 ~~~~~~~~i~lvG~~g~GKSTlin~l~g~   42 (240)
                      +++|  ..+.|.|++|+|||||+..++-.
T Consensus        31 i~~G--~~~li~G~pGsGKT~l~lq~~~~   57 (251)
T d1szpa2          31 VETG--SITELFGEFRTGKSQLCHTLAVT   57 (251)
T ss_dssp             EESS--SEEEEEESTTSSHHHHHHHHTTT
T ss_pred             CcCC--eEEEEEcCCCCCHHHHHHHHHHH
Confidence            4566  89999999999999999888754

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=95.54  E-value=0.0038  Score=43.73  Aligned_cols=22  Identities=32%  Similarity=0.507  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 036363           20 RTVVLVGHTGNGKSATGNSILG   41 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g   41 (240)
                      .-|++.|++|+||||+.-.+..
T Consensus        15 ~gvl~~G~sG~GKStlal~l~~   36 (176)
T d1kkma_          15 LGVLITGDSGVGKSETALELVQ   36 (176)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEEeCCCCCHHHHHHHHHH
Confidence            6899999999999999988764

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=95.51  E-value=0.0043  Score=43.51  Aligned_cols=22  Identities=32%  Similarity=0.518  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 036363           20 RTVVLVGHTGNGKSATGNSILG   41 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g   41 (240)
                      .-|+|.|++|+||||+.-.+..
T Consensus        16 ~gvli~G~sG~GKS~lal~l~~   37 (177)
T d1knxa2          16 VGVLLTGRSGIGKSECALDLIN   37 (177)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHT
T ss_pred             EEEEEEcCCCCCHHHHHHHHHH
Confidence            6899999999999999988874

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.40  E-value=0.0038  Score=46.05  Aligned_cols=26  Identities=15%  Similarity=0.287  Sum_probs=22.3

Q ss_pred             CCCCCceEEEEEcCCCCcHHHHHHHHhC
Q 036363           14 SPSNGVRTVVLVGHTGNGKSATGNSILG   41 (240)
Q Consensus        14 ~~~~~~~~i~lvG~~g~GKSTlin~l~g   41 (240)
                      ++.|  ..+.|.|++|+|||||.-.++.
T Consensus        33 lp~G--~~~li~G~pGsGKT~~~lq~~~   58 (254)
T d1pzna2          33 IETQ--AITEVFGEFGSGKTQLAHTLAV   58 (254)
T ss_dssp             EESS--EEEEEEESTTSSHHHHHHHHHH
T ss_pred             ccCC--EEEEEEcCCCCCHHHHHHHHHH
Confidence            5666  8999999999999999987763

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.34  E-value=0.0054  Score=44.44  Aligned_cols=23  Identities=17%  Similarity=0.403  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 036363           20 RTVVLVGHTGNGKSATGNSILGR   42 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~   42 (240)
                      .-|+|-|..||||||+++.|...
T Consensus         4 k~I~iEG~DGsGKST~~~~L~~~   26 (214)
T d1tmka_           4 KLILIEGLDRTGKTTQCNILYKK   26 (214)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCcHHHHHHHHHHH
Confidence            78999999999999999988643

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.24  E-value=0.0067  Score=44.65  Aligned_cols=27  Identities=15%  Similarity=0.096  Sum_probs=23.5

Q ss_pred             cCCCCCceEEEEEcCCCCcHHHHHHHHhC
Q 036363           13 TSPSNGVRTVVLVGHTGNGKSATGNSILG   41 (240)
Q Consensus        13 ~~~~~~~~~i~lvG~~g~GKSTlin~l~g   41 (240)
                      -+++|  ..+.|.|++|+|||+|.-.++.
T Consensus        33 Gip~G--~~~~i~G~~GsGKT~lalq~~~   59 (258)
T d1v5wa_          33 GIESM--AITEAFGEFRTGKTQLSHTLCV   59 (258)
T ss_dssp             SBCSS--EEEEEECCTTCTHHHHHHHHHH
T ss_pred             CCcCC--EEEEEECCCCCCHHHHHHHHHH
Confidence            36777  8999999999999999988874

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=95.20  E-value=0.0068  Score=45.87  Aligned_cols=29  Identities=14%  Similarity=0.083  Sum_probs=24.3

Q ss_pred             ccCCCCCceEEEEEcCCCCcHHHHHHHHhCC
Q 036363           12 LTSPSNGVRTVVLVGHTGNGKSATGNSILGR   42 (240)
Q Consensus        12 ~~~~~~~~~~i~lvG~~g~GKSTlin~l~g~   42 (240)
                      +++..|  .+++|+|+.|+|||+|+..|+..
T Consensus        38 ~PigrG--Qr~~I~g~~g~GKT~l~~~i~~~   66 (289)
T d1xpua3          38 SPIGRG--QRGLIVAPPKAGKTMLLQNIAQS   66 (289)
T ss_dssp             SCCBTT--CEEEEEECSSSSHHHHHHHHHHH
T ss_pred             ccccCC--CeeeEeCCCCCCHHHHHHHHHHH
Confidence            355566  89999999999999999888753

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=95.06  E-value=0.0065  Score=42.25  Aligned_cols=22  Identities=32%  Similarity=0.514  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 036363           20 RTVVLVGHTGNGKSATGNSILG   41 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g   41 (240)
                      .-|++.|++|+||||+.-.+..
T Consensus        16 ~gvli~G~sg~GKS~la~~l~~   37 (169)
T d1ko7a2          16 VGVLITGDSGIGKSETALELIK   37 (169)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEEeCCCCCHHHHHHHHHH
Confidence            7899999999999999877664

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=94.99  E-value=0.0057  Score=44.89  Aligned_cols=27  Identities=19%  Similarity=0.279  Sum_probs=22.5

Q ss_pred             CCCCCceEEEEEcCCCCcHHHHHHHHhCC
Q 036363           14 SPSNGVRTVVLVGHTGNGKSATGNSILGR   42 (240)
Q Consensus        14 ~~~~~~~~i~lvG~~g~GKSTlin~l~g~   42 (240)
                      +++|  ..+.|.|++|+|||+|+..++..
T Consensus        23 i~~g--sl~li~G~pGsGKT~l~~qia~~   49 (242)
T d1tf7a2          23 FFKD--SIILATGATGTGKTLLVSRFVEN   49 (242)
T ss_dssp             EESS--CEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CcCC--eEEEEEeCCCCCHHHHHHHHHHH
Confidence            4556  79999999999999999887643

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=94.98  E-value=0.0062  Score=44.57  Aligned_cols=26  Identities=19%  Similarity=0.156  Sum_probs=22.6

Q ss_pred             CCCCCceEEEEEcCCCCcHHHHHHHHhC
Q 036363           14 SPSNGVRTVVLVGHTGNGKSATGNSILG   41 (240)
Q Consensus        14 ~~~~~~~~i~lvG~~g~GKSTlin~l~g   41 (240)
                      +++|  ..+.|.|++|+|||+|...++.
T Consensus        31 l~~G--~l~~i~G~~G~GKT~~~l~~a~   56 (258)
T d2i1qa2          31 LESQ--SVTEFAGVFGSGKTQIMHQSCV   56 (258)
T ss_dssp             EETT--EEEEEEESTTSSHHHHHHHHHH
T ss_pred             ccCC--eEEEEEeCCCCCHHHHHHHHHH
Confidence            5667  8999999999999999988764

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=94.81  E-value=0.0066  Score=44.10  Aligned_cols=25  Identities=28%  Similarity=0.514  Sum_probs=21.4

Q ss_pred             CCCCCceEEEEEcCCCCcHHHHHHHHh
Q 036363           14 SPSNGVRTVVLVGHTGNGKSATGNSIL   40 (240)
Q Consensus        14 ~~~~~~~~i~lvG~~g~GKSTlin~l~   40 (240)
                      +++|  ..+.|.|++|+|||+|...++
T Consensus        23 i~~G--~~~~I~G~~G~GKT~la~~~~   47 (242)
T d1tf7a1          23 LPIG--RSTLVSGTSGTGKTLFSIQFL   47 (242)
T ss_dssp             EETT--SEEEEEESTTSSHHHHHHHHH
T ss_pred             CcCC--eEEEEEeCCCCCHHHHHHHHH
Confidence            5677  899999999999999986654

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=94.63  E-value=0.0077  Score=45.21  Aligned_cols=26  Identities=15%  Similarity=0.210  Sum_probs=21.6

Q ss_pred             cCCCCCceEEEEEcCCCCcHHHHHHHHh
Q 036363           13 TSPSNGVRTVVLVGHTGNGKSATGNSIL   40 (240)
Q Consensus        13 ~~~~~~~~~i~lvG~~g~GKSTlin~l~   40 (240)
                      -+.+|  ..++|.|++|+|||||+..++
T Consensus        31 G~~~G--~l~vi~G~~G~GKT~~~~~la   56 (277)
T d1cr2a_          31 GARGG--EVIMVTSGSGMGKSTFVRQQA   56 (277)
T ss_dssp             SBCTT--CEEEEECSTTSSHHHHHHHHH
T ss_pred             CCCCC--eEEEEEeCCCCCHHHHHHHHH
Confidence            35566  789999999999999987765

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=94.62  E-value=0.0095  Score=43.11  Aligned_cols=21  Identities=19%  Similarity=0.328  Sum_probs=19.2

Q ss_pred             EEEEcCCCCcHHHHHHHHhCC
Q 036363           22 VVLVGHTGNGKSATGNSILGR   42 (240)
Q Consensus        22 i~lvG~~g~GKSTlin~l~g~   42 (240)
                      +.|.|++|+|||-|+++++..
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~   59 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNE   59 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            789999999999999999764

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=94.60  E-value=0.01  Score=42.34  Aligned_cols=23  Identities=30%  Similarity=0.398  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 036363           20 RTVVLVGHTGNGKSATGNSILGR   42 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~   42 (240)
                      ..+++.||+++|||+|+++|+..
T Consensus        54 n~i~~~GP~~TGKS~f~~sl~~~   76 (205)
T d1tuea_          54 NCLVFCGPANTGKSYFGMSFIHF   76 (205)
T ss_dssp             SEEEEESCGGGCHHHHHHHHHHH
T ss_pred             eEEEEECCCCccHHHHHHHHHHH
Confidence            79999999999999999998764

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=94.58  E-value=0.013  Score=44.06  Aligned_cols=23  Identities=30%  Similarity=0.429  Sum_probs=20.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhC
Q 036363           19 VRTVVLVGHTGNGKSATGNSILG   41 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g   41 (240)
                      ...|+|+|..|.|||||...++.
T Consensus        44 ~~~v~I~GmgGiGKTtLA~~v~~   66 (277)
T d2a5yb3          44 SFFLFLHGRAGSGKSVIASQALS   66 (277)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            37899999999999999998864

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=94.41  E-value=0.0057  Score=47.44  Aligned_cols=23  Identities=26%  Similarity=0.437  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 036363           20 RTVVLVGHTGNGKSATGNSILGR   42 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~   42 (240)
                      -.|.|+|++|+|||||++++.+.
T Consensus        29 h~vLl~G~pG~GKT~lar~~~~i   51 (333)
T d1g8pa_          29 GGVLVFGDRGTGKSTAVRALAAL   51 (333)
T ss_dssp             CCEEEECCGGGCTTHHHHHHHHH
T ss_pred             CeEEEECCCCccHHHHHHHHHHh
Confidence            36899999999999999998753

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=94.35  E-value=0.015  Score=44.64  Aligned_cols=23  Identities=22%  Similarity=0.484  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 036363           20 RTVVLVGHTGNGKSATGNSILGR   42 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~   42 (240)
                      -.+.++||+|+|||.+.+.|+..
T Consensus        54 ~~~lf~Gp~G~GKt~lak~la~~   76 (315)
T d1qvra3          54 GSFLFLGPTGVGKTELAKTLAAT   76 (315)
T ss_dssp             EEEEEBSCSSSSHHHHHHHHHHH
T ss_pred             eEEEEECCCcchHHHHHHHHHHH
Confidence            47888999999999999987643

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=94.25  E-value=0.011  Score=47.24  Aligned_cols=22  Identities=32%  Similarity=0.418  Sum_probs=19.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 036363           20 RTVVLVGHTGNGKSATGNSILG   41 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g   41 (240)
                      ..++|+|.+|+|||++++.++-
T Consensus        51 ~H~~I~G~tGsGKT~~l~~li~   72 (433)
T d1e9ra_          51 RHLLVNGATGTGKSVLLRELAY   72 (433)
T ss_dssp             GCEEEEECTTSSHHHHHHHHHH
T ss_pred             ceEEEEeCCCCcHHHHHHHHHH
Confidence            5699999999999999987663

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=94.05  E-value=0.013  Score=45.21  Aligned_cols=23  Identities=26%  Similarity=0.352  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 036363           20 RTVVLVGHTGNGKSATGNSILGR   42 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~   42 (240)
                      .+|+|=|+.|+||||+++.|...
T Consensus         5 lrI~IEG~iGsGKTTl~~~La~~   27 (329)
T d1e2ka_           5 LRVYIDGPHGMGKTTTTQLLVAL   27 (329)
T ss_dssp             EEEEECSCTTSSHHHHHHHHTC-
T ss_pred             eEEEEECCcCCCHHHHHHHHHHH
Confidence            68999999999999999999754

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.03  E-value=0.015  Score=41.68  Aligned_cols=22  Identities=14%  Similarity=0.196  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 036363           20 RTVVLVGHTGNGKSATGNSILG   41 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g   41 (240)
                      ..+++.|++|+||||++..++.
T Consensus        25 h~lLl~Gp~G~GKtt~a~~~a~   46 (207)
T d1a5ta2          25 HALLIQALPGMGDDALIYALSR   46 (207)
T ss_dssp             SEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHHH
Confidence            4599999999999999997764

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=93.93  E-value=0.013  Score=45.39  Aligned_cols=23  Identities=26%  Similarity=0.388  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCC
Q 036363           20 RTVVLVGHTGNGKSATGNSILGR   42 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~   42 (240)
                      .+|+|=|.-|+||||+++.|...
T Consensus         6 lrI~IEG~iGsGKSTl~~~L~~~   28 (331)
T d1osna_           6 LRIYLDGAYGIGKTTAAEEFLHH   28 (331)
T ss_dssp             EEEEEEESSSSCTTHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            68999999999999999999754

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=93.84  E-value=0.02  Score=44.28  Aligned_cols=24  Identities=33%  Similarity=0.454  Sum_probs=21.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhCC
Q 036363           19 VRTVVLVGHTGNGKSATGNSILGR   42 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~g~   42 (240)
                      ..+|.|=|+.|+||||+++.|...
T Consensus         6 ~~rI~iEG~iGsGKSTl~~~L~~~   29 (333)
T d1p6xa_           6 IVRIYLDGVYGIGKSTTGRVMASA   29 (333)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHSG
T ss_pred             eEEEEEECCccCCHHHHHHHHHHH
Confidence            478999999999999999999865

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=93.80  E-value=0.015  Score=44.76  Aligned_cols=22  Identities=18%  Similarity=0.326  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhCC
Q 036363           21 TVVLVGHTGNGKSATGNSILGR   42 (240)
Q Consensus        21 ~i~lvG~~g~GKSTlin~l~g~   42 (240)
                      .+++.||+|+|||.+.+.|.+.
T Consensus       125 ~~l~~G~pG~GKT~la~ala~~  146 (321)
T d1w44a_         125 MVIVTGKGNSGKTPLVHALGEA  146 (321)
T ss_dssp             EEEEECSSSSCHHHHHHHHHHH
T ss_pred             eEEEECCCCccHHHHHHHHHHH
Confidence            4555799999999999999865

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=93.50  E-value=0.015  Score=43.63  Aligned_cols=44  Identities=16%  Similarity=0.132  Sum_probs=33.2

Q ss_pred             CCceEEEEEEECCCCCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363           89 DEIHAALVVFSVRSRFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        89 ~~~~~~l~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~  139 (240)
                      ..+|++++|+|+..+++..+..+.+.+    .   .+|.++|+||+|..++
T Consensus        14 ~~~DvIl~V~DaR~P~ss~~~~l~~~~----~---~Kp~IlVlNK~DLv~~   57 (273)
T d1puja_          14 KLIDIVYELVDARIPMSSRNPMIEDIL----K---NKPRIMLLNKADKADA   57 (273)
T ss_dssp             GGCSEEEEEEETTSTTTTSCHHHHHHC----S---SSCEEEEEECGGGSCH
T ss_pred             HhCCEEEEEEECCCCCCCCCHHHHHHH----c---CCCeEEEEECccCCch
Confidence            568999999999988887765443333    2   2579999999997654

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=93.39  E-value=0.025  Score=42.12  Aligned_cols=21  Identities=29%  Similarity=0.284  Sum_probs=18.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 036363           20 RTVVLVGHTGNGKSATGNSIL   40 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~   40 (240)
                      ...+|+|++|+|||||+-.|+
T Consensus        30 ~~~~i~G~~G~GKS~l~l~la   50 (274)
T d1nlfa_          30 TVGALVSPGGAGKSMLALQLA   50 (274)
T ss_dssp             SEEEEEESTTSSHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHH
Confidence            577899999999999997764

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=93.14  E-value=0.034  Score=41.54  Aligned_cols=24  Identities=25%  Similarity=0.349  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhCCC
Q 036363           20 RTVVLVGHTGNGKSATGNSILGRR   43 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g~~   43 (240)
                      -.+.+.|++++|||+|+++|....
T Consensus       105 n~~~l~G~~~tGKS~f~~~i~~~l  128 (267)
T d1u0ja_         105 NTIWLFGPATTGKTNIAEAIAHTV  128 (267)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHh
Confidence            789999999999999999987643

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=92.79  E-value=0.037  Score=41.14  Aligned_cols=22  Identities=36%  Similarity=0.584  Sum_probs=18.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHh
Q 036363           19 VRTVVLVGHTGNGKSATGNSIL   40 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l~   40 (240)
                      .++|+|.|..|+||||+.-.|.
T Consensus         1 mr~Iai~gKGGvGKTT~a~nLA   22 (269)
T d1cp2a_           1 MRQVAIYGKGGIGKSTTTQNLT   22 (269)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHH
T ss_pred             CCEEEEECCCcCCHHHHHHHHH
Confidence            3689999999999999986553

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.65  E-value=0.032  Score=41.76  Aligned_cols=26  Identities=19%  Similarity=0.276  Sum_probs=22.1

Q ss_pred             cCCCCCceEEEEEcCCCCcHHHHHHHHh
Q 036363           13 TSPSNGVRTVVLVGHTGNGKSATGNSIL   40 (240)
Q Consensus        13 ~~~~~~~~~i~lvG~~g~GKSTlin~l~   40 (240)
                      ++-.|  .+++++|+.|+|||+|+-.++
T Consensus        64 pigkG--Qr~~If~~~g~GKt~l~~~i~   89 (276)
T d2jdid3          64 PYAKG--GKIGLFGGAGVGKTVLIMELI   89 (276)
T ss_dssp             CEETT--CEEEEEECTTSSHHHHHHHHH
T ss_pred             cccCC--CEEEeeCCCCCCHHHHHHHHH
Confidence            44556  899999999999999987775

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=91.74  E-value=0.031  Score=42.15  Aligned_cols=16  Identities=19%  Similarity=0.395  Sum_probs=13.7

Q ss_pred             EEEEEcCCCCcHHHHH
Q 036363           21 TVVLVGHTGNGKSATG   36 (240)
Q Consensus        21 ~i~lvG~~g~GKSTli   36 (240)
                      .+.|+|++|+||||++
T Consensus        16 ~~lI~g~aGTGKTt~l   31 (306)
T d1uaaa1          16 PCLVLAGAGSGKTRVI   31 (306)
T ss_dssp             EEEECCCTTSCHHHHH
T ss_pred             CEEEEeeCCccHHHHH
Confidence            4788899999999765

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=91.73  E-value=0.045  Score=36.02  Aligned_cols=21  Identities=29%  Similarity=0.316  Sum_probs=17.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 036363           20 RTVVLVGHTGNGKSATGNSIL   40 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~   40 (240)
                      ...+|.+++|+|||+++-.++
T Consensus         9 ~~~ll~apTGsGKT~~~~~~~   29 (136)
T d1a1va1           9 QVAHLHAPTGSGKSTKVPAAY   29 (136)
T ss_dssp             EEEEEECCTTSCTTTHHHHHH
T ss_pred             CEEEEEeCCCCCHHHHHHHHH
Confidence            677889999999998875443

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=91.68  E-value=0.044  Score=40.80  Aligned_cols=25  Identities=24%  Similarity=0.450  Sum_probs=20.9

Q ss_pred             CCCCceEEEEEcCCCCcHHHHHHHHhC
Q 036363           15 PSNGVRTVVLVGHTGNGKSATGNSILG   41 (240)
Q Consensus        15 ~~~~~~~i~lvG~~g~GKSTlin~l~g   41 (240)
                      +.|  ..+.|.|++|+|||||+-.++.
T Consensus        52 ~~g--~itei~G~~gsGKTtl~l~~~~   76 (263)
T d1u94a1          52 PMG--RIVEIYGPESSGKTTLTLQVIA   76 (263)
T ss_dssp             ETT--SEEEEECSTTSSHHHHHHHHHH
T ss_pred             cCc--eEEEEecCCCcHHHHHHHHHHH
Confidence            445  7899999999999999877764

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.59  E-value=0.07  Score=34.44  Aligned_cols=22  Identities=14%  Similarity=0.135  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 036363           20 RTVVLVGHTGNGKSATGNSILG   41 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g   41 (240)
                      ..|.+-|.+|+||||+.++|.-
T Consensus         7 f~i~~tg~~~~gk~~ia~al~~   28 (122)
T d1g8fa3           7 FSIVLGNSLTVSREQLSIALLS   28 (122)
T ss_dssp             EEEEECTTCCSCHHHHHHHHHH
T ss_pred             eEEEEeCCCCCCHHHHHHHHHH
Confidence            8999999999999999999853

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=91.54  E-value=0.041  Score=41.83  Aligned_cols=16  Identities=19%  Similarity=0.451  Sum_probs=13.7

Q ss_pred             EEEEEcCCCCcHHHHH
Q 036363           21 TVVLVGHTGNGKSATG   36 (240)
Q Consensus        21 ~i~lvG~~g~GKSTli   36 (240)
                      .+.|.|+.|+||||.+
T Consensus        26 ~~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          26 PLLIMAGAGSGKTRVL   41 (318)
T ss_dssp             CEEEEECTTSCHHHHH
T ss_pred             CEEEEecCCccHHHHH
Confidence            4788899999999765

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=90.78  E-value=0.076  Score=39.71  Aligned_cols=23  Identities=17%  Similarity=0.219  Sum_probs=18.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHh
Q 036363           18 GVRTVVLVGHTGNGKSATGNSIL   40 (240)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlin~l~   40 (240)
                      .++.|.+.|..|+||||+.-.|.
T Consensus         7 ~p~~i~~sGKGGVGKTTvaa~lA   29 (296)
T d1ihua1           7 IPPYLFFTGKGGVGKTSISCATA   29 (296)
T ss_dssp             CCSEEEEECSTTSSHHHHHHHHH
T ss_pred             CCeEEEEECCCcChHHHHHHHHH
Confidence            34788899999999999776654

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=90.57  E-value=0.084  Score=41.11  Aligned_cols=19  Identities=37%  Similarity=0.555  Sum_probs=16.6

Q ss_pred             eEEEEEcCCCCcHHHHHHH
Q 036363           20 RTVVLVGHTGNGKSATGNS   38 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~   38 (240)
                      ...+|.|++|+||||++..
T Consensus       164 ~~~vI~G~pGTGKTt~i~~  182 (359)
T d1w36d1         164 RISVISGGPGTGKTTTVAK  182 (359)
T ss_dssp             SEEEEECCTTSTHHHHHHH
T ss_pred             CeEEEEcCCCCCceehHHH
Confidence            5889999999999998754

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=90.40  E-value=0.067  Score=40.22  Aligned_cols=26  Identities=12%  Similarity=0.290  Sum_probs=21.7

Q ss_pred             cCCCCCceEEEEEcCCCCcHHHHHHHHh
Q 036363           13 TSPSNGVRTVVLVGHTGNGKSATGNSIL   40 (240)
Q Consensus        13 ~~~~~~~~~i~lvG~~g~GKSTlin~l~   40 (240)
                      ++-.|  .+++++|+.|+|||+|+..++
T Consensus        64 pig~G--Qr~~If~~~g~GKt~ll~~~~   89 (285)
T d2jdia3          64 PIGRG--QRELIIGDRQTGKTSIAIDTI   89 (285)
T ss_dssp             CCBTT--CBCEEEESTTSSHHHHHHHHH
T ss_pred             CccCC--CEEEeecCCCCChHHHHHHHH
Confidence            55566  899999999999999986655

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=90.21  E-value=0.065  Score=40.11  Aligned_cols=26  Identities=15%  Similarity=0.367  Sum_probs=21.1

Q ss_pred             ccCCCCCceEEEEEcCCCCcHHHHHHHH
Q 036363           12 LTSPSNGVRTVVLVGHTGNGKSATGNSI   39 (240)
Q Consensus        12 ~~~~~~~~~~i~lvG~~g~GKSTlin~l   39 (240)
                      +++-.|  .+++|+|+.|+|||+|+..+
T Consensus        62 ~pig~G--Qr~~Ifg~~g~GKt~l~~~~   87 (276)
T d1fx0a3          62 IPVGRG--QRELIIGDRQTGKTAVATDT   87 (276)
T ss_dssp             SCCBTT--CBCBEEESSSSSHHHHHHHH
T ss_pred             ccccCC--ceEeeccCCCCChHHHHHHH
Confidence            345556  89999999999999998654

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=89.90  E-value=0.11  Score=38.90  Aligned_cols=21  Identities=33%  Similarity=0.578  Sum_probs=17.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHH
Q 036363           19 VRTVVLVGHTGNGKSATGNSI   39 (240)
Q Consensus        19 ~~~i~lvG~~g~GKSTlin~l   39 (240)
                      +++|++-|..|+||||+.-.|
T Consensus         2 Mr~IaisgKGGVGKTT~a~NL   22 (289)
T d2afhe1           2 MRQCAIYGKGGIGKSTTTQNL   22 (289)
T ss_dssp             CEEEEEEECTTSSHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHH
Confidence            468899999999999977554

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=89.83  E-value=0.11  Score=38.67  Aligned_cols=26  Identities=19%  Similarity=0.374  Sum_probs=21.5

Q ss_pred             cCCCCCceEEEEEcCCCCcHHHHHHHHh
Q 036363           13 TSPSNGVRTVVLVGHTGNGKSATGNSIL   40 (240)
Q Consensus        13 ~~~~~~~~~i~lvG~~g~GKSTlin~l~   40 (240)
                      -++.|  ..+.+.|++|+|||||+-.++
T Consensus        56 G~~~g--~i~e~~G~~~~GKT~l~l~~~   81 (269)
T d1mo6a1          56 GLPRG--RVIEIYGPESSGKTTVALHAV   81 (269)
T ss_dssp             SBCSS--SEEEEECSSSSSHHHHHHHHH
T ss_pred             Ccccc--eeEEEecCCCcHHHHHHHHHH
Confidence            34556  899999999999999986665

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=89.75  E-value=0.13  Score=38.07  Aligned_cols=23  Identities=26%  Similarity=0.452  Sum_probs=18.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHh
Q 036363           18 GVRTVVLVGHTGNGKSATGNSIL   40 (240)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlin~l~   40 (240)
                      ....|++.|..|+||||+.-.|.
T Consensus        19 ~~~iii~sGKGGVGKTT~a~nLA   41 (279)
T d1ihua2          19 EHGLIMLMGKGGVGKTTMAAAIA   41 (279)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHH
Confidence            34777888999999999865553

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=89.42  E-value=0.091  Score=39.13  Aligned_cols=26  Identities=23%  Similarity=0.449  Sum_probs=21.9

Q ss_pred             CCCCceEEEEEcCCCCcHHHHHHHHhCC
Q 036363           15 PSNGVRTVVLVGHTGNGKSATGNSILGR   42 (240)
Q Consensus        15 ~~~~~~~i~lvG~~g~GKSTlin~l~g~   42 (240)
                      +.|  ..+-+.|++|+|||+|+-.++..
T Consensus        55 p~g--~itei~G~~~sGKT~l~l~~~~~   80 (268)
T d1xp8a1          55 PRG--RITEIYGPESGGKTTLALAIVAQ   80 (268)
T ss_dssp             ETT--SEEEEEESTTSSHHHHHHHHHHH
T ss_pred             cCc--eEEEEecCCccchHHHHHHHHHH
Confidence            455  78999999999999999887753

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=88.98  E-value=0.12  Score=38.00  Aligned_cols=22  Identities=27%  Similarity=0.434  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhC
Q 036363           20 RTVVLVGHTGNGKSATGNSILG   41 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTlin~l~g   41 (240)
                      .-|.|.|++|+||+++.+.|-.
T Consensus        24 ~pvlI~Ge~GtGK~~~A~~ih~   45 (247)
T d1ny5a2          24 CPVLITGESGVGKEVVARLIHK   45 (247)
T ss_dssp             SCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEECCCCcCHHHHHHHHHH
Confidence            4689999999999999999864

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=88.29  E-value=1.4  Score=31.57  Aligned_cols=47  Identities=21%  Similarity=0.147  Sum_probs=29.3

Q ss_pred             CCceEEEEEEECCC-CCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363           89 DEIHAALVVFSVRS-RFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        89 ~~~~~~l~v~~~~~-~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~  139 (240)
                      ..+|.+++|+.+.+ .++..-...+-.+.+..    ..+.++|+||+|.+.+
T Consensus         9 ANiD~~~iV~s~~~P~~~~~~idR~Lv~a~~~----~i~pvIvlnK~DL~~~   56 (231)
T d1t9ha2           9 CNVDQAVLVFSAVQPSFSTALLDRFLVLVEAN----DIQPIICITKMDLIED   56 (231)
T ss_dssp             ECCCEEEEEEESTTTTCCHHHHHHHHHHHHTT----TCEEEEEEECGGGCCC
T ss_pred             cccCEEEEEEECCCCCCCHHHHHHHHHHHHHc----CCCEEEEEeccccccc
Confidence            35788888888763 45555444333333322    2457899999997654

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=88.11  E-value=0.14  Score=33.89  Aligned_cols=18  Identities=22%  Similarity=0.209  Sum_probs=14.3

Q ss_pred             EEEEcCCCCcHHH-HHHHH
Q 036363           22 VVLVGHTGNGKSA-TGNSI   39 (240)
Q Consensus        22 i~lvG~~g~GKST-lin~l   39 (240)
                      =+++||-.||||| |++.+
T Consensus         5 ~~i~GpMfsGKTteLi~~~   23 (139)
T d2b8ta1           5 EFITGPMFAGKTAELIRRL   23 (139)
T ss_dssp             EEEECSTTSCHHHHHHHHH
T ss_pred             EEEEccccCHHHHHHHHHH
Confidence            3678999999999 55554

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=88.08  E-value=1.5  Score=31.34  Aligned_cols=47  Identities=13%  Similarity=0.085  Sum_probs=29.6

Q ss_pred             CCceEEEEEEECCC-CCCHHHHHHHHHHHHHhCCCcCCeEEEEEeCCCCCCC
Q 036363           89 DEIHAALVVFSVRS-RFSQEEEATLHSLQTLFGKNCFDYMIVVFSGRDELEA  139 (240)
Q Consensus        89 ~~~~~~l~v~~~~~-~~~~~~~~~l~~l~~~~~~~~~~~~i~v~~~~D~~~~  139 (240)
                      ..+|.+++|+.+.. .++..-...+-.+.+..+    .+.++|+||+|.+.+
T Consensus         9 ANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~~~----i~pvIvlnK~DL~~~   56 (225)
T d1u0la2           9 ANVDQVILVVTVKMPETSTYIIDKFLVLAEKNE----LETVMVINKMDLYDE   56 (225)
T ss_dssp             ESCCEEEEEECSSTTCCCHHHHHHHHHHHHHTT----CEEEEEECCGGGCCH
T ss_pred             ccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHcC----CCEEEEEeCcccCCH
Confidence            35788899988764 455554433333333222    467899999997654

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=88.04  E-value=0.17  Score=35.64  Aligned_cols=21  Identities=19%  Similarity=0.400  Sum_probs=17.8

Q ss_pred             eEEEEEcCC-CCcHHHHHHHHh
Q 036363           20 RTVVLVGHT-GNGKSATGNSIL   40 (240)
Q Consensus        20 ~~i~lvG~~-g~GKSTlin~l~   40 (240)
                      +++.|.|.. |+||||+.-.|+
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~La   23 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCALL   23 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHH
T ss_pred             ceEEEEECCCCccHHHHHHHHH
Confidence            688999995 999999887664

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=87.51  E-value=0.16  Score=38.47  Aligned_cols=21  Identities=10%  Similarity=0.058  Sum_probs=16.6

Q ss_pred             hHHHHHHHhCCcEEEEeCCCc
Q 036363          155 PLKEILHLFDNRCVLFDNKTK  175 (240)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~  175 (240)
                      .+.+.+...+.++|.+|....
T Consensus       197 lL~~ki~~~~~~v~LvNTGw~  217 (313)
T d2olra1         197 VLVKRMQAAGAQAYLVNTGWN  217 (313)
T ss_dssp             HHHHHHHHHTCEEEEEECSBC
T ss_pred             HHHHHHHhcCCcEEEEecccc
Confidence            367788888999999987654

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=87.30  E-value=0.089  Score=34.19  Aligned_cols=16  Identities=44%  Similarity=0.480  Sum_probs=13.9

Q ss_pred             eEEEEEcCCCCcHHHH
Q 036363           20 RTVVLVGHTGNGKSAT   35 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTl   35 (240)
                      .+++|.+++|+|||..
T Consensus         8 ~~~il~~~tGsGKT~~   23 (140)
T d1yksa1           8 MTTVLDFHPGAGKTRR   23 (140)
T ss_dssp             CEEEECCCTTSSTTTT
T ss_pred             CcEEEEcCCCCChhHH
Confidence            7889999999999943

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=87.05  E-value=0.17  Score=38.33  Aligned_cols=17  Identities=29%  Similarity=0.581  Sum_probs=15.2

Q ss_pred             eEEEEEcCCCCcHHHHH
Q 036363           20 RTVVLVGHTGNGKSATG   36 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTli   36 (240)
                      ..-+++|.+|+|||||-
T Consensus        15 ~valffGLSGTGKTTLs   31 (318)
T d1j3ba1          15 DVAVFFGLSGTGKTTLS   31 (318)
T ss_dssp             CEEEEEECTTSCHHHHT
T ss_pred             CEEEEEccCCCCccccc
Confidence            57799999999999975

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=86.59  E-value=0.2  Score=38.09  Aligned_cols=17  Identities=29%  Similarity=0.579  Sum_probs=15.2

Q ss_pred             eEEEEEcCCCCcHHHHH
Q 036363           20 RTVVLVGHTGNGKSATG   36 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTli   36 (240)
                      ..-+++|.+|+|||||-
T Consensus        15 d~alfFGLSGTGKTTLs   31 (323)
T d1ii2a1          15 DVTVFFGLSGTGKTTLS   31 (323)
T ss_dssp             CEEEEECCTTSSHHHHH
T ss_pred             CEEEEEccCCCCcccce
Confidence            56789999999999987

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=85.90  E-value=0.31  Score=34.29  Aligned_cols=24  Identities=4%  Similarity=-0.046  Sum_probs=21.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhC
Q 036363           18 GVRTVVLVGHTGNGKSATGNSILG   41 (240)
Q Consensus        18 ~~~~i~lvG~~g~GKSTlin~l~g   41 (240)
                      ....+.+.|++|+||||+...+..
T Consensus        14 ~~~~~l~~G~~g~gk~~~a~~l~~   37 (198)
T d2gnoa2          14 EGISILINGEDLSYPREVSLELPE   37 (198)
T ss_dssp             SSEEEEEECSSSSHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHH
Confidence            447999999999999999998875

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=85.33  E-value=0.31  Score=34.69  Aligned_cols=21  Identities=29%  Similarity=0.550  Sum_probs=17.2

Q ss_pred             eEEEEE-cCCCCcHHHHHHHHh
Q 036363           20 RTVVLV-GHTGNGKSATGNSIL   40 (240)
Q Consensus        20 ~~i~lv-G~~g~GKSTlin~l~   40 (240)
                      +.|+++ |..|+||||+.-.|+
T Consensus         2 kvIav~s~KGGvGKTtia~nlA   23 (232)
T d1hyqa_           2 RTITVASGKGGTGKTTITANLG   23 (232)
T ss_dssp             EEEEEEESSSCSCHHHHHHHHH
T ss_pred             EEEEEECCCCCChHHHHHHHHH
Confidence            578888 789999999987654

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=85.24  E-value=0.24  Score=34.50  Aligned_cols=16  Identities=31%  Similarity=0.399  Sum_probs=13.1

Q ss_pred             EEEEEcCCCCcHHHHH
Q 036363           21 TVVLVGHTGNGKSATG   36 (240)
Q Consensus        21 ~i~lvG~~g~GKSTli   36 (240)
                      ++.+++|+|+|||...
T Consensus        25 n~lv~~pTGsGKT~i~   40 (200)
T d1wp9a1          25 NCLIVLPTGLGKTLIA   40 (200)
T ss_dssp             CEEEECCTTSCHHHHH
T ss_pred             CeEEEeCCCCcHHHHH
Confidence            5678899999999643

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=82.84  E-value=0.15  Score=35.88  Aligned_cols=17  Identities=24%  Similarity=0.360  Sum_probs=14.5

Q ss_pred             eEEEEEcCCCCcHHHHH
Q 036363           20 RTVVLVGHTGNGKSATG   36 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTli   36 (240)
                      ..+++.+|+|+|||+..
T Consensus        41 ~~~il~apTGsGKT~~a   57 (202)
T d2p6ra3          41 KNLLLAMPTAAGKTLLA   57 (202)
T ss_dssp             SCEEEECSSHHHHHHHH
T ss_pred             CCEEEEcCCCCchhHHH
Confidence            57889999999999753

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=81.16  E-value=0.6  Score=33.10  Aligned_cols=64  Identities=17%  Similarity=0.045  Sum_probs=34.7

Q ss_pred             cEEEEEeCCCCCCCCCCCcCCCceEEEEEEECCCCCCHHH-HHHHHHHHHHhCCCcCCeEEEEEeCCCCC
Q 036363           69 QVVNVIDTPGLFDFSAGSEFDEIHAALVVFSVRSRFSQEE-EATLHSLQTLFGKNCFDYMIVVFSGRDEL  137 (240)
Q Consensus        69 ~~~~l~DtpG~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~i~v~~~~D~~  137 (240)
                      ..+.++|+|+............+|.++++..+. ..+... .+.++.+.    ....+..-+|+|+.+..
T Consensus       112 ~d~IiiD~~~~~~~~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~~~----~~~~~~~giv~N~~~~~  176 (237)
T d1g3qa_         112 FDFILIDCPAGLQLDAMSAMLSGEEALLVTNPE-ISCLTDTMKVGIVLK----KAGLAILGFVLNRYGRS  176 (237)
T ss_dssp             CSEEEEECCSSSSHHHHHHHTTCSEEEEEECSC-HHHHHHHHHHHHHHH----HTTCEEEEEEEEEETSC
T ss_pred             CCEEEEcccccccccchhhhhhhhccccccccc-ceecchhhHHHHHHh----hhhhhhhhhhhcccccc
Confidence            467899998754322111116788899988765 222222 23333332    22223344789998744

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Helicase-like "domain" of reverse gyrase
domain: Helicase-like "domain" of reverse gyrase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=80.16  E-value=0.23  Score=35.86  Aligned_cols=17  Identities=29%  Similarity=0.472  Sum_probs=14.6

Q ss_pred             eEEEEEcCCCCcHHHHH
Q 036363           20 RTVVLVGHTGNGKSATG   36 (240)
Q Consensus        20 ~~i~lvG~~g~GKSTli   36 (240)
                      ..+++++|+|+|||...
T Consensus        59 ~~~~i~apTGsGKT~~~   75 (237)
T d1gkub1          59 ESFAATAPTGVGKTSFG   75 (237)
T ss_dssp             CCEECCCCBTSCSHHHH
T ss_pred             CCEEEEecCCChHHHHH
Confidence            67889999999999654