Citrus Sinensis ID: 036413

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340------
Protein Sequence
MASRKQKKQRKRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNNNSNNIDEDEYEVEVDIEDEVRPPLPVVKDTLCYYPQYYQQKNPEVWESEDNSEVWGSEEPSDNKNNNNNLASLYRPPVDLMFNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMESGPRDQLERATKTQLPPYPPVHEQMPAYPAVPEEPLQVARNLVCRIGVRLPDGQEANQTRQFRLTRPDPGAPKPLDYNSKMTFQESGLNNSVILVTLE
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccEEEEEEccccccccccccccccccHHHHHHHHcccEEEEEEEcccccccccHHHHHHHHHcccccccEEEEEcccccccEEEcccccccHHHHHHHHHHHHcccccHHHHcccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEc
Secondary Structure Prediction (SSPRO)
cccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHcccHHHHHHHHHHcccccccccccccccccccccccccccccEEcccccccccccccccccccccHHHHHHcHHHHcccHHHHHHHccccHHHHccccHHHHHHHHHHcccEEEEEEccccHccHHHHcHHHcccHHHHHHHHHccEEEEEEEcccccccccHHHHHEEEEEccccccEEEEEccccccEEEEEcccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccEEEEEEEEcccccEEEccccEEEEEEcccccccccccccccHHHccccccEEEEEEc
Coil and Loop (DISEMBL)
masrkqkkQRKRVISSFLEITNGQTEETALKILNATNWNLDKAILRFnnnsnnidedeyevevdiedevrpplpvvkdtlcyypqyyqqknpevwesednsevwgseepsdnknnnnnlaslyrppvdlmfngsfekakdvgsdenKWLLVNLqspkeftshtlnrdtwadEAVSQTIRASNFIfwqvydddddddddsecrkvcgyykldslpvvlvidpitgekmrkwcgmvdpvsLLEDLLSFmesgprdqleratktqlppyppvheqmpaypavpeeplQVARNLVCrigvrlpdgqeanqtrqfrltrpdpgapkpldynskmtfqesglnnSVILVTLE
Flexible Loop (DISEMBL)
masrkqkkqrkrvissfleitngqteeTALKILNATNWNLDKAILRFNNNSNNIDEDEYEVEVDIEDEVRPPLPVVKDTLCYYPQYYQQKNPEVWESEDNSEVWGseepsdnknnnnNLASLYRPPVDLMFNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCgyykldslpvvlVIDPITGEKMRKWCGMVDPVSLLEDLLSFMESGPRDQLERATKTQLPPYPPVHEQMPAYPAVPEEPLQVARNLVCRIGVrlpdgqeanqtrqfrltrpdpgapkpldynskmtfqesglnnSVILVTLE
Low Complexity Region (SEG)
MASRKQKKQRKRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNNNSNNidedeyevevdiedevRPPLPVVKDTLCYYPQYYQQKNPEVWESEDNSEVWGSEEPSDnknnnnnLASLYRPPVDLMFNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYdddddddddSECRKVCGYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMESGPRDQLERATKTQLPPYPPVHEQMPAYPAVPEEPLQVARNLVCRIGVRLPDGQEANQTRQFRLTRPDPGAPKPLDYNSKMTFQESGLNNSVILVTLE
Disordered region (IsUnstruct)
**************SSFLEITNGQTEETALKILNATNWNLDKAILRFNNNSNNIDEDEYEVEVDIEDEVRPPLPVVKDTLCYYPQYYQQK*******************************************************NKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVY************RKVCGYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSF*************************************LQVARNLVCRIGVRL************************************************
Disordered Region (DISOPRED)
****************FLEITNGQTEETALKILNATNWNLDKAILRF**************************************************************************LYRPPVDLMFNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFM***************************************************************************LD**SKMTFQESGLNNSVILVTLE
Disordered Region (DISEMBL)
*************ISSFLEITNGQTEETALKILNATNWNLDKAILRFNNNSNNIDEDEYEVEVDIEDEVRPPLPVVKDTLCYYPQYYQQKNPE******************NKNNNNNLASLYRPPVDLMFNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMESGPRDQLERATKTQLPPYPPVHEQMPAYPAVPEEPLQVARNLVCRIGVRLPDGQEANQTRQFRLTRPDPGAPKPLDYNSKMTFQESGLNNSVILVTLE
Disordered Region (DISPRO)
**********KRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNNNS**************************D****YPQYYQ**NP*****E**S*V*G**E*****NNNNNLASLYRPPVDLMFNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMESGPR*********************PAYPAVPEEPLQVARNLVCRIGVRLPDGQEANQTRQFRLTRPDPGAPKPLDYNSKMTFQESGLNNSVILVTLE
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MASRKQKKQRKRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNNNSNNIDEDEYEVEVDIEDEVRPPLPVVKDTLCYYPQYYQQKNPEVWESEDNSEVWGSEEPSDNKNNNNNLASLYRPPVDLMFNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMESGPRDQLERATKTQLPPYPPVHEQMPAYPAVPEEPLQVARNLVCRIGVRLPDGQEANQTRQFRLTRPDPGAPKPLDYNSKMTFQESGLNNSVILVTLE
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	346	2.2.26 [Sep-21-2011]
Q6P5G6	467	UBX domain-containing pro	yes	no	0.632	0.468	0.337	6e-31
Q5REY7	489	UBX domain-containing pro	yes	no	0.682	0.482	0.323	5e-30
O94888	489	UBX domain-containing pro	yes	no	0.682	0.482	0.323	5e-30
Q55BU7	503	UBX domain-containing pro	yes	no	0.658	0.453	0.272	5e-21
O14048	427	UBX domain-containing pro	yes	no	0.378	0.306	0.355	4e-19
Q06682	500	UBX domain-containing pro	yes	no	0.358	0.248	0.311	1e-12

>sp|Q6P5G6|UBXN7_MOUSE UBX domain-containing protein 7 OS=Mus musculus GN=Ubxn7 PE=1 SV=2

 Score =  135 bits (339), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 87/258 (33%), Positives = 129/258 (50%), Gaps = 39/258 (15%)

Query: 11  KRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNNNSNNIDEDEYEVEV------D 64
           K +I  F  IT G +E     +L A N NL+ A+  F +     +E              
Sbjct: 14  KGLIQQFTAIT-GASESVGKHMLEACNNNLEMAVTMFLDGGGIAEEPSTSSASVSTVRPH 72

Query: 65  IEDEVRPPLPVVKDTLCYYPQYYQQKNPEVWESEDNSEVWGSEEPSDNKNNN------NN 118
            E+EVR P+P  ++ L           PE         ++G  +  + +N          
Sbjct: 73  TEEEVRAPIPQKQEILV---------EPE--------PLFGVRQEQELRNGGAIDKKLTT 115

Query: 119 LASLYRPPVDLMFNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTI 178
           LA L+RPP+DLM  GSFE AK+ G  +NKWL++N+Q+ ++F    LNRD W++EAV   I
Sbjct: 116 LADLFRPPIDLMHKGSFETAKECGQMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNII 175

Query: 179 RASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVS 238
           R  +FIFWQVY D +      E ++   +YKL   P V ++DP TG+K+ +W   +D  S
Sbjct: 176 R-EHFIFWQVYHDSE------EGQRYIQFYKLGDFPYVSILDPRTGQKLVEW-HQLDVSS 227

Query: 239 LLEDLLSFM-ESGPRDQL 255
            L+ +  F+ E G  D L
Sbjct: 228 FLDQVTGFLGEHGQLDGL 245

Mus musculus (taxid: 10090)

>sp|Q5REY7|UBXN7_PONAB UBX domain-containing protein 7 OS=Pongo abelii GN=UBXN7 PE=2 SV=2

 Score =  132 bits (331), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 85/263 (32%), Positives = 134/263 (50%), Gaps = 27/263 (10%)

Query: 11  KRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNNNSNNIDEDEYEVEV------D 64
           K +I  F  IT G +E     +L A N NL+ A+  F +     +E              
Sbjct: 14  KGLIQQFTTIT-GASESVGKHMLEACNNNLEMAVTMFLDGGGIAEEPSTSSASVSTVRPH 72

Query: 65  IEDEVRPPLPVVKDTLCYYPQYY---QQKNP--EVWESEDNSEVWGSEEPSDNKNNN--- 116
            E+EVR P+P  ++ L      +   +++ P   +++   + +     +  + +N     
Sbjct: 73  TEEEVRAPIPQKQEILVEPEPLFGAPKRRRPARSIFDGFRDFQTETIRQEQELRNGGAID 132

Query: 117 ---NNLASLYRPPVDLMFNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEA 173
                LA L+RPP+DLM  GSFE AK+ G  +NKWL++N+Q+ ++F    LNRD W++EA
Sbjct: 133 KKLTTLADLFRPPIDLMHKGSFETAKECGQMQNKWLMINIQNVQDFACQCLNRDVWSNEA 192

Query: 174 VSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVLVIDPITGEKMRKWCGM 233
           V   IR  +FIFWQVY D +      E ++   +YKL   P V ++DP TG+K+ +W   
Sbjct: 193 VKNIIR-EHFIFWQVYHDSE------EGQRYIQFYKLGDFPYVSILDPRTGQKLVEW-HQ 244

Query: 234 VDPVSLLEDLLSFM-ESGPRDQL 255
           +D  S L+ +  F+ E G  D L
Sbjct: 245 LDVSSFLDQVTGFLGEHGQLDGL 267

Pongo abelii (taxid: 9601)

>sp|O94888|UBXN7_HUMAN UBX domain-containing protein 7 OS=Homo sapiens GN=UBXN7 PE=1 SV=2

 Score =  132 bits (331), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 85/263 (32%), Positives = 134/263 (50%), Gaps = 27/263 (10%)

Query: 11  KRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNNNSNNIDEDEYEVEV------D 64
           K +I  F  IT G +E     +L A N NL+ A+  F +     +E              
Sbjct: 14  KGLIQQFTTIT-GASESVGKHMLEACNNNLEMAVTMFLDGGGIAEEPSTSSASVSTVRPH 72

Query: 65  IEDEVRPPLPVVKDTLCYYPQYY---QQKNP--EVWESEDNSEVWGSEEPSDNKNNN--- 116
            E+EVR P+P  ++ L      +   +++ P   +++   + +     +  + +N     
Sbjct: 73  TEEEVRAPIPQKQEILVEPEPLFGAPKRRRPARSIFDGFRDFQTETIRQEQELRNGGAID 132

Query: 117 ---NNLASLYRPPVDLMFNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEA 173
                LA L+RPP+DLM  GSFE AK+ G  +NKWL++N+Q+ ++F    LNRD W++EA
Sbjct: 133 KKLTTLADLFRPPIDLMHKGSFETAKECGQMQNKWLMINIQNVQDFACQCLNRDVWSNEA 192

Query: 174 VSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVLVIDPITGEKMRKWCGM 233
           V   IR  +FIFWQVY D +      E ++   +YKL   P V ++DP TG+K+ +W   
Sbjct: 193 VKNIIR-EHFIFWQVYHDSE------EGQRYIQFYKLGDFPYVSILDPRTGQKLVEW-HQ 244

Query: 234 VDPVSLLEDLLSFM-ESGPRDQL 255
           +D  S L+ +  F+ E G  D L
Sbjct: 245 LDVSSFLDQVTGFLGEHGQLDGL 267

Homo sapiens (taxid: 9606)

>sp|Q55BU7|UBXN7_DICDI UBX domain-containing protein 7 homolog OS=Dictyostelium discoideum GN=ubxd7 PE=4 SV=1

 Score =  102 bits (253), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 71/261 (27%), Positives = 125/261 (47%), Gaps = 33/261 (12%)

Query: 13  VISSFLEITNGQTEETALKILNATNWNLDKAILRF--NNNSNNID--------------- 55
           ++S+FL IT       A  IL   NW++++++  F   N+ +N+                
Sbjct: 6   ILSNFLSITGCDDSSLATTILENNNWDVERSVDFFFTMNDPSNVKPTTSSKKTSSPPTAS 65

Query: 56  EDEYEVEVDI-EDEVRPPLPVVKDTLCYYPQYYQ------QKNPEVWESEDNSEVWGSEE 108
                 E D  EDE R P+P   D L     YYQ      QK   V+E+  + E      
Sbjct: 66  SSSASSEFDYNEDEFRDPIPQKMDKLV--DHYYQPTQRSYQKQTNVFEAFRDFEKERGIN 123

Query: 109 PSDNKNNNNNLASLYRPPVDLMFNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDT 168
                    +L+ L++PP+D++  G+F++ K +   +  ++LVN+Q  +EF    LNRDT
Sbjct: 124 QDKATEKQKSLSELFKPPLDILTFGTFDEIKKMAEQKKYFVLVNIQDVQEFDCQKLNRDT 183

Query: 169 WADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVLVIDPITGEKMR 228
           W+++ + + I   NF+FWQV      +  + E +     Y +   P + +IDP TG+K++
Sbjct: 184 WSNKDLKELI-GENFVFWQV------NSANPEGKWFTQIYPVFKFPYIAIIDPRTGQKLQ 236

Query: 229 KWCGMVDPVSLLEDLLSFMES 249
              G +D   + + L++F+ +
Sbjct: 237 DMTGFIDAEEMAQYLVTFLST 257

Dictyostelium discoideum (taxid: 44689)

>sp|O14048|UBX2_SCHPO UBX domain-containing protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ubx2 PE=1 SV=1

 Score = 95.9 bits (237), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 49/138 (35%), Positives = 81/138 (58%), Gaps = 7/138 (5%)

Query: 117 NNLASLYRPPVDLMFNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQ 176
           + LA L+RPP D++ N S ++A+   S + +W+LVNLQ+   F    LNRD W DE+V +
Sbjct: 143 SRLAKLFRPPYDIISNLSLDEARIEASSQKRWILVNLQTSTSFECQVLNRDLWKDESVKE 202

Query: 177 TIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVLVIDPITGEKMRKWCGMVDP 236
            IRA +F+F Q+    DD++   E ++   +Y + S P + ++DP TGE++++W     P
Sbjct: 203 VIRA-HFLFLQLL---DDEEPGMEFKR---FYPVRSTPHIAILDPRTGERVKEWSKSFTP 255

Query: 237 VSLLEDLLSFMESGPRDQ 254
              +  L  F+E    D+
Sbjct: 256 ADFVIALNDFLEGCTLDE 273

Involved in CDC48-dependent protein degradation through the ubiquitin/proteasome pathway.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q06682|UBX5_YEAST UBX domain-containing protein 5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UBX5 PE=1 SV=1

 Score = 74.3 bits (181), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 69/135 (51%), Gaps = 11/135 (8%)

Query: 119 LASLYRPPVDLMFNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTI 178
           LA L+RPP  +M     + AK     + KW+++N+Q    F    LNRD W+   V +TI
Sbjct: 208 LALLFRPPFSIMSKLDLDAAKQKARAKQKWIMINIQDSGIFQCQALNRDLWSSRPV-KTI 266

Query: 179 RASNFIFWQVYDDDDDDDDDSECRKVCGYYKL---DSLPVVLVIDPITGEKMRKWCGMVD 235
              NF+F Q   +  +       +    +Y L   D LP + ++DPITGE++++W  +V 
Sbjct: 267 IKENFVFLQYQYESRN------AQPYLQFYHLNNKDDLPHIAILDPITGERVKQWNRVVP 320

Query: 236 -PVSLLEDLLSFMES 249
            P   + ++  F+ S
Sbjct: 321 IPEQFISEINEFLAS 335

Involved in CDC48-dependent protein degradation through the ubiquitin/proteasome pathway.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	346
356559122	467	PREDICTED: UBX domain-containing protein	0.927	0.687	0.389	8e-76
356559126	443	PREDICTED: UBX domain-containing protein	0.921	0.720	0.406	2e-75
356559124	456	PREDICTED: UBX domain-containing protein	0.930	0.706	0.391	2e-74
449445306	450	PREDICTED: UBX domain-containing protein	0.924	0.711	0.396	2e-74
357517375	461	UBX domain-containing protein [Medicago	0.924	0.694	0.384	2e-71
145323892	447	UBX domain-containing protein [Arabidops	0.950	0.736	0.378	2e-68
18394134	468	UBX domain-containing protein [Arabidops	0.950	0.702	0.361	9e-66
297844366	472	UBX domain-containing protein [Arabidops	0.950	0.697	0.360	2e-65
224099647	309	predicted protein [Populus trichocarpa]	0.690	0.773	0.481	1e-63
224111366	444	predicted protein [Populus trichocarpa]	0.664	0.518	0.501	1e-63

>gi|356559122|ref|XP_003547850.1| PREDICTED: UBX domain-containing protein 7-like isoform 1 [Glycine max]

 Score =  290 bits (742), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 184/472 (38%), Positives = 237/472 (50%), Gaps = 151/472 (31%)

Query: 9   QRKRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNNNSN---------------- 52
           +++ ++SSFLE+  GQT ETA + L AT+W L++A+  F   S                 
Sbjct: 9   EQQSMVSSFLEVAQGQTAETARQFLQATSWKLEEALQLFLIGSEGGAVPLPVPPPPLLHT 68

Query: 53  ----NIDE----------------DEYEVEVDIEDEVRPPLPVVKDTLCYYPQYY----- 87
               N+D                     + ++  +EVRPPLPV+++TL      Y     
Sbjct: 69  PPLENVDSWTDQQPLSEPRKDAAAASESIGLNDAEEVRPPLPVIRETLYDDAMLYGASRA 128

Query: 88  ------------------QQKNPEVWESEDNSEVWGSEEPSDNKNNNNNLASLYRPPVDL 129
                             + + P VWESE  +        S  + + +NLASLYRPP  L
Sbjct: 129 GHRSHEPSSLVAFRNFEEEMRQPGVWESEQGA-------ASTAEASRDNLASLYRPPFHL 181

Query: 130 MFNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVY 189
           MFNG+F+KAKD  S +NKWLLVN+QS KEF+SH LNRDTWA+EAVSQTI ++N IFWQVY
Sbjct: 182 MFNGAFDKAKDAASMQNKWLLVNIQSTKEFSSHMLNRDTWANEAVSQTI-STNCIFWQVY 240

Query: 190 DDDDDDDDDSECRKVCGYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMES 249
                 DD +E RKVC YY+LDS+PVVLVIDPITG+KMR W GMV P SLLE LL+F+++
Sbjct: 241 ------DDTTEGRKVCTYYRLDSIPVVLVIDPITGQKMRSWIGMVQPESLLEGLLAFLDA 294

Query: 250 GPRDQ-----LERATKTQLPP--------------YPPVHEQMPA--------------- 275
           GP+D       +R   +  PP              Y  V   + A               
Sbjct: 295 GPKDHHITMSHKRPRGSSSPPKSKALVESDENKEEYEEVQRALAASMESMKESTAMAGRD 354

Query: 276 --------------------YPAVPEEPLQVARNLVCRIGVRLPDGQEA----------- 304
                               YP +PEEP +V RNL+CR+GVRLPDG+             
Sbjct: 355 NKDADVAVNGQETPMAKRPTYPTLPEEP-KVERNLLCRVGVRLPDGRRVQRNFLRTDPIQ 413

Query: 305 ------------NQTRQFRLTRPDPGAPKPLDYNSKMTFQESGLNNSVILVT 344
                       ++T  FRLT   PGA K LDY    TFQESGL NS+I VT
Sbjct: 414 LLWSFISAQLGEDETNSFRLTHAIPGASKILDYEINSTFQESGLANSMISVT 465

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356559126|ref|XP_003547852.1| PREDICTED: UBX domain-containing protein 7-like isoform 3 [Glycine max]

 Score =  288 bits (738), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 183/450 (40%), Positives = 237/450 (52%), Gaps = 131/450 (29%)

Query: 9   QRKRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNNNSN---------------- 52
           +++ ++SSFLE+  GQT ETA + L AT+W L++A+  F   S                 
Sbjct: 9   EQQSMVSSFLEVAQGQTAETARQFLQATSWKLEEALQLFLIGSEGGAVPLPVPPPPLLHT 68

Query: 53  ----NIDE----------------DEYEVEVDIEDEVRPPLPVVKDTL----CYYPQYYQ 88
               N+D                     + ++  +EVRPPLPV+++TL      Y   Y+
Sbjct: 69  PPLENVDSWTDQQPLSEPRKDAAAASESIGLNDAEEVRPPLPVIRETLYDDAMLYG--YE 126

Query: 89  QKNPEVWESEDNSEVWGSEEPSDNKNNNNNLASLYRPPVDLMFNGSFEKAKDVGSDENKW 148
            + P VWESE  +        S  + + +NLASLYRPP  LMFNG+F+KAKD  S +NKW
Sbjct: 127 MRQPGVWESEQGA-------ASTAEASRDNLASLYRPPFHLMFNGAFDKAKDAASMQNKW 179

Query: 149 LLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYY 208
           LLVN+QS KEF+SH LNRDTWA+EAVSQTI ++N IFWQVY      DD +E RKVC YY
Sbjct: 180 LLVNIQSTKEFSSHMLNRDTWANEAVSQTI-STNCIFWQVY------DDTTEGRKVCTYY 232

Query: 209 KLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMESGPRD--------------- 253
           +LDS+PVVLVIDPITG+KMR W GMV P SLLE LL+F+++GP+D               
Sbjct: 233 RLDSIPVVLVIDPITGQKMRSWIGMVQPESLLEGLLAFLDAGPKDHHITMSHKRPRGSSS 292

Query: 254 ---------------QLERATKTQLPPYP---------------PVHEQ---MPAYPAVP 280
                          +++RA    +                    V+ Q   M   P  P
Sbjct: 293 PPKSKESDENKEEYEEVQRALAASMESMKESTAMAGRDNKDADVAVNGQETPMAKRPTYP 352

Query: 281 ---EEPLQVARNLVCRIGVRLPDGQEA-----------------------NQTRQFRLTR 314
              EEP +V RNL+CR+GVRLPDG+                         ++T  FRLT 
Sbjct: 353 TLPEEP-KVERNLLCRVGVRLPDGRRVQRNFLRTDPIQLLWSFISAQLGEDETNSFRLTH 411

Query: 315 PDPGAPKPLDYNSKMTFQESGLNNSVILVT 344
             PGA K LDY    TFQESGL NS+I VT
Sbjct: 412 AIPGASKILDYEINSTFQESGLANSMISVT 441

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356559124|ref|XP_003547851.1| PREDICTED: UBX domain-containing protein 7-like isoform 2 [Glycine max]

 Score =  285 bits (729), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 180/460 (39%), Positives = 232/460 (50%), Gaps = 138/460 (30%)

Query: 9   QRKRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNNNS----------------- 51
           +++ ++SSFLE+  GQT ETA + L AT+W L++A+  F   S                 
Sbjct: 9   EQQSMVSSFLEVAQGQTAETARQFLQATSWKLEEALQLFLIGSEGGAVPLPVPPPPLLHT 68

Query: 52  ----NNIDEDEYEVEVDIEDEVRPPLPVVKDTLCYYPQYY-------------------- 87
               N+       + ++  +EVRPPLPV+++TL      Y                    
Sbjct: 69  PPLENDAAAASESIGLNDAEEVRPPLPVIRETLYDDAMLYGASRAGHRSHEPSSLVAFRN 128

Query: 88  ---QQKNPEVWESEDNSEVWGSEEPSDNKNNNNNLASLYRPPVDLMFNGSFEKAKDVGSD 144
              + + P VWESE  +        S  + + +NLASLYRPP  LMFNG+F+KAKD  S 
Sbjct: 129 FEEEMRQPGVWESEQGA-------ASTAEASRDNLASLYRPPFHLMFNGAFDKAKDAASM 181

Query: 145 ENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKV 204
           +NKWLLVN+QS KEF+SH LNRDTWA+EAVSQTI ++N IFWQVY      DD +E RKV
Sbjct: 182 QNKWLLVNIQSTKEFSSHMLNRDTWANEAVSQTI-STNCIFWQVY------DDTTEGRKV 234

Query: 205 CGYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMESGPRDQ-----LERAT 259
           C YY+LDS+PVVLVIDPITG+KMR W GMV P SLLE LL+F+++GP+D       +R  
Sbjct: 235 CTYYRLDSIPVVLVIDPITGQKMRSWIGMVQPESLLEGLLAFLDAGPKDHHITMSHKRPR 294

Query: 260 KTQLPP------------------YPPVHEQMPAY------------------------- 276
            +  PP                  Y  V   + A                          
Sbjct: 295 GSSSPPKSKGMLLLSIYIPGNKEEYEEVQRALAASMESMKESTAMAGRDNKDADVAVNGQ 354

Query: 277 -------PAVPEEPLQ--VARNLVCRIGVRLPDGQEA----------------------- 304
                  P  P  P +  V RNL+CR+GVRLPDG+                         
Sbjct: 355 ETPMAKRPTYPTLPEEPKVERNLLCRVGVRLPDGRRVQRNFLRTDPIQLLWSFISAQLGE 414

Query: 305 NQTRQFRLTRPDPGAPKPLDYNSKMTFQESGLNNSVILVT 344
           ++T  FRLT   PGA K LDY    TFQESGL NS+I VT
Sbjct: 415 DETNSFRLTHAIPGASKILDYEINSTFQESGLANSMISVT 454

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449445306|ref|XP_004140414.1| PREDICTED: UBX domain-containing protein 7-like [Cucumis sativus]

 Score =  285 bits (729), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 180/454 (39%), Positives = 236/454 (51%), Gaps = 134/454 (29%)

Query: 10  RKRVISSFLEITNGQTEETALKILNATNWNLDKAILRF---------------------- 47
           ++ ++SSFLE+  GQT ETA + L AT+W L+ AI  F                      
Sbjct: 10  KQSMVSSFLEVAVGQTAETARQFLQATSWKLEDAIQLFYVGNEGGVVGPPPVPSPPSTNE 69

Query: 48  --NNNSNNIDEDEYE-----VEVDIEDEVRPPLPVVKD-----------TLCYYPQYY-- 87
             N+++++I  +  +          EDEVRPPLPV+++           T+ Y P     
Sbjct: 70  QINSSTDHISNESGKHAGPGTFGQYEDEVRPPLPVIREALYDDAMLYGTTMGYLPNESGS 129

Query: 88  ---------QQKNPEVWESEDNSEVWGSEEPSDNKNNNNNLASLYRPPVDLMFNGSFEKA 138
                    + K+ +VW+S       G    S + N+ +NLASLYRPP  LMF GSFEKA
Sbjct: 130 SIGFRNLQNEVKHHDVWQS-------GEGAASTSGNSRDNLASLYRPPYHLMFTGSFEKA 182

Query: 139 KDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDD 198
           K     ++KWL+VNLQS KEF+SH LNRDTWA+EAVSQTI ++NFIFWQVY      DD 
Sbjct: 183 KGAACVQDKWLIVNLQSTKEFSSHMLNRDTWANEAVSQTI-STNFIFWQVY------DDS 235

Query: 199 SECRKVCGYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMESGPRDQ---- 254
           +E +KVC YYKL+S+P VLVIDPITG+KM  W GMV P  LLEDLL FM+ GP+D     
Sbjct: 236 TEGQKVCTYYKLESIPAVLVIDPITGQKMHSWFGMVQPERLLEDLLPFMDGGPKDHHVTL 295

Query: 255 -------------------------LERATKTQLPPYPPV----------------HEQM 273
                                    ++RA    L                       E+ 
Sbjct: 296 SHKRPRESSLTPPKVREVEYEEDEEVQRALAVSLEGMKEAVKLSSEDKDTKVAEKEEEKC 355

Query: 274 PAYPAVPEEPLQVARNLVCRIGVRLPDGQ-----------------------EANQTRQF 310
           P YP +PEEP +  R L+CRIGVRLP+G+                       E  +T+ F
Sbjct: 356 PTYPPLPEEP-KGDRKLLCRIGVRLPNGRRCQRNFLRTDPIQLLWSFCSSQLEDGETKPF 414

Query: 311 RLTRPDPGAPKPLDYNSKMTFQESGLNNSVILVT 344
           +LT   PGA K LDY+++MTF+ESGL NS+I VT
Sbjct: 415 KLTHAIPGATKTLDYDTQMTFEESGLANSMISVT 448

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357517375|ref|XP_003628976.1| UBX domain-containing protein [Medicago truncatula] gi|358345084|ref|XP_003636613.1| UBX domain-containing protein [Medicago truncatula] gi|355502548|gb|AES83751.1| UBX domain-containing protein [Medicago truncatula] gi|355522998|gb|AET03452.1| UBX domain-containing protein [Medicago truncatula]

 Score =  275 bits (704), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 179/465 (38%), Positives = 234/465 (50%), Gaps = 145/465 (31%)

Query: 10  RKRVISSFLEITNGQTEETALKILNATNWNLDKAILRF---------------------N 48
           ++ +++SFLE+  GQT  TA + L AT+W L++A+  F                      
Sbjct: 10  QQTLVTSFLEVAQGQTAATARQFLQATSWKLEEALQLFLIGSETGAVPVPAPASFTPPLE 69

Query: 49  NNSNNIDEDEY-EVEVDIE---------DEVRPPLPVVKDTL------------CYYPQY 86
           N    ID+    E   D           DEVR PLPV+++TL             + PQ 
Sbjct: 70  NADGWIDQSHLSETRTDTANQSGVVNEGDEVRAPLPVIRETLYDNVLLYGGSRLGHLPQE 129

Query: 87  ---------YQQ--KNPEVWESEDNSEVWGSEEPSDNKNNNNNLASLYRPPVDLMFNGSF 135
                    ++Q  + P VWE E  +        S  +++ + LASLYRPP  LMF GSF
Sbjct: 130 PNSLIAFRNFEQETRRPGVWEPEQGAA-------STAESSQDTLASLYRPPFHLMFTGSF 182

Query: 136 EKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDD 195
           +KAK   S ++KWL+VN+QS KEF+SH LNRDTWA+EAVSQTI+ +NFIFWQVY      
Sbjct: 183 DKAKSAASMQDKWLMVNIQSTKEFSSHMLNRDTWANEAVSQTIK-TNFIFWQVY------ 235

Query: 196 DDDSECRKVCGYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMESGPRDQ- 254
           DD +E +KVC YY+LDS+PVVL+IDPITG+KMR W GMV P SLLE LL F ++GP+D  
Sbjct: 236 DDTTEGKKVCTYYRLDSIPVVLIIDPITGQKMRAWGGMVQPDSLLEGLLPFFDAGPKDHH 295

Query: 255 ----LERATKTQLPPYPP------------------------------------------ 268
                +R   +  PP P                                           
Sbjct: 296 NTLSHKRPRGSSSPPKPKATLDSDANKEEDEEVQRALAASLESVKESSEMAEGDDKEANV 355

Query: 269 ---VHEQM---PAYPAVPEEPLQVARNLVCRIGVRLPDGQEA------------------ 304
              V E     PAYP +PEEP +  RNL+CR+GVRLPDG+                    
Sbjct: 356 AGNVQETALPRPAYPTLPEEP-KAERNLLCRVGVRLPDGRRVQRNFLRSEPIQLLWSFIA 414

Query: 305 -----NQTRQFRLTRPDPGAPKPLDYNSKMTFQESGLNNSVILVT 344
                ++T+ F+LT   PGA K LDY S  TF+ESGL  S+I VT
Sbjct: 415 VQLGEDETKPFKLTHAIPGATKNLDYESNSTFEESGLAYSMISVT 459

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145323892|ref|NP_001077535.1| UBX domain-containing protein [Arabidopsis thaliana] gi|145323894|ref|NP_001077536.1| UBX domain-containing protein [Arabidopsis thaliana] gi|332191063|gb|AEE29184.1| UBX domain-containing protein [Arabidopsis thaliana] gi|332191064|gb|AEE29185.1| UBX domain-containing protein [Arabidopsis thaliana]

 Score =  265 bits (677), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 169/446 (37%), Positives = 230/446 (51%), Gaps = 117/446 (26%)

Query: 10  RKRVISSFLEITNGQTEETALKILNATNWNLDKAI-----------LRFNNNSNNIDEDE 58
           ++R++SSFLEI  GQT ETA + L AT+W L++AI           L+   ++     D+
Sbjct: 10  QQRLVSSFLEIAVGQTAETARQFLQATSWKLEEAIQLFYIGNEGGMLQSGTHTQPASNDD 69

Query: 59  YEVEV---------------DIEDEVRPPLPVVKDTLCYYPQYYQQ--KNPEVWESEDNS 101
              +                D+ DEVR PLPVV++TL     YY +  K+P +WE ++  
Sbjct: 70  AAAQSWGAATGTGNEMILPNDV-DEVRAPLPVVRETLYGESMYYGEEPKSPGIWEPDEGD 128

Query: 102 EVWGSEEPSDNKNN----NNNLASLYRPPVDLMFNGSFEKAKDVGSDENKWLLVNLQSPK 157
               +   +    +     ++LASLYRPP  LMF GSFE+AK   S ++KWLLVNLQS  
Sbjct: 129 SSASASASASASESASAPRDSLASLYRPPFHLMFQGSFEQAKTTSSSQDKWLLVNLQSTT 188

Query: 158 EFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVL 217
           EF+SH LNRDTWA++AVSQTI+A NFIFWQVY      DD +E RKVC YYKL+S+PVVL
Sbjct: 189 EFSSHMLNRDTWANDAVSQTIKA-NFIFWQVY------DDTTEGRKVCTYYKLESIPVVL 241

Query: 218 VIDPITGEKMRKWCGMVDPVSLLEDLLSFMESGPRDQLERATKTQ------LPPYPPVHE 271
           VIDP TG++MR W GMVDP +LLEDL+ FM+ GPR+     +K +      L P+    E
Sbjct: 242 VIDPTTGQRMRMWTGMVDPENLLEDLVPFMDGGPREHFASLSKKRPRGSFSLTPHSKPKE 301

Query: 272 QM--------------------------------------------PAYPAVP---EEPL 284
            +                                               P  P   EEP 
Sbjct: 302 DVAKDEEEEELQRALAASLEDNNMKESSDDQSTIIPEEVAVEAVTSAVLPTFPPLPEEPK 361

Query: 285 QVARNLVCRIGVRLPDGQ------------------------EANQTRQFRLTRPDPGAP 320
              R+L CR+G+RLP+GQ                        E+ + +  +LT+  PG  
Sbjct: 362 GGDRSLQCRVGIRLPNGQRLQRNFLKTDTIQLLWSFCYSQLEESERKKPLKLTQAIPGES 421

Query: 321 KPLDYNSKMTFQESGLNNSVILVTLE 346
           K L+Y S +T ++SG+ NS+I  T E
Sbjct: 422 KTLEYESNLTLEQSGVANSMISATWE 447

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18394134|ref|NP_563954.1| UBX domain-containing protein [Arabidopsis thaliana] gi|42571473|ref|NP_973827.1| UBX domain-containing protein [Arabidopsis thaliana] gi|13877613|gb|AAK43884.1|AF370507_1 Unknown protein [Arabidopsis thaliana] gi|17978789|gb|AAL47388.1| unknown protein [Arabidopsis thaliana] gi|222424074|dbj|BAH19997.1| AT1G14570 [Arabidopsis thaliana] gi|332191061|gb|AEE29182.1| UBX domain-containing protein [Arabidopsis thaliana] gi|332191062|gb|AEE29183.1| UBX domain-containing protein [Arabidopsis thaliana]

 Score =  256 bits (655), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 169/467 (36%), Positives = 230/467 (49%), Gaps = 138/467 (29%)

Query: 10  RKRVISSFLEITNGQTEETALKILNATNWNLDKAI-----------LRFNNNSNNIDEDE 58
           ++R++SSFLEI  GQT ETA + L AT+W L++AI           L+   ++     D+
Sbjct: 10  QQRLVSSFLEIAVGQTAETARQFLQATSWKLEEAIQLFYIGNEGGMLQSGTHTQPASNDD 69

Query: 59  YEVEV---------------DIEDEVRPPLPVVKDTLCYYPQYY---------------- 87
              +                D+ DEVR PLPVV++TL     YY                
Sbjct: 70  AAAQSWGAATGTGNEMILPNDV-DEVRAPLPVVRETLYGESMYYGAMRVGNSQPEPNSLI 128

Query: 88  -------QQKNPEVWESEDNSEVWGSEEPSDNKNN----NNNLASLYRPPVDLMFNGSFE 136
                  + K+P +WE ++      +   +    +     ++LASLYRPP  LMF GSFE
Sbjct: 129 AFRNFSEEPKSPGIWEPDEGDSSASASASASASESASAPRDSLASLYRPPFHLMFQGSFE 188

Query: 137 KAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDD 196
           +AK   S ++KWLLVNLQS  EF+SH LNRDTWA++AVSQTI+A NFIFWQVY      D
Sbjct: 189 QAKTTSSSQDKWLLVNLQSTTEFSSHMLNRDTWANDAVSQTIKA-NFIFWQVY------D 241

Query: 197 DDSECRKVCGYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMESGPRDQLE 256
           D +E RKVC YYKL+S+PVVLVIDP TG++MR W GMVDP +LLEDL+ FM+ GPR+   
Sbjct: 242 DTTEGRKVCTYYKLESIPVVLVIDPTTGQRMRMWTGMVDPENLLEDLVPFMDGGPREHFA 301

Query: 257 RATKTQ------LPPYPPVHEQM------------------------------------- 273
             +K +      L P+    E +                                     
Sbjct: 302 SLSKKRPRGSFSLTPHSKPKEDVAKDEEEEELQRALAASLEDNNMKESSDDQSTIIPEEV 361

Query: 274 -------PAYPAVP---EEPLQVARNLVCRIGVRLPDGQ--------------------- 302
                     P  P   EEP    R+L CR+G+RLP+GQ                     
Sbjct: 362 AVEAVTSAVLPTFPPLPEEPKGGDRSLQCRVGIRLPNGQRLQRNFLKTDTIQLLWSFCYS 421

Query: 303 ---EANQTRQFRLTRPDPGAPKPLDYNSKMTFQESGLNNSVILVTLE 346
              E+ + +  +LT+  PG  K L+Y S +T ++SG+ NS+I  T E
Sbjct: 422 QLEESERKKPLKLTQAIPGESKTLEYESNLTLEQSGVANSMISATWE 468

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297844366|ref|XP_002890064.1| UBX domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297335906|gb|EFH66323.1| UBX domain-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  255 bits (651), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 170/471 (36%), Positives = 232/471 (49%), Gaps = 142/471 (30%)

Query: 10  RKRVISSFLEITNGQTEETALKILNATNWNLDKAI-LRFNNNSNNI-------------- 54
           ++R++SSFLEI  GQT ETA + L AT+W L++AI L +  N   +              
Sbjct: 10  QQRLVSSFLEIAVGQTAETARQFLQATSWKLEEAIQLFYIGNEGGMLPSGTHTQPASNDH 69

Query: 55  -----------DEDEYEVEVDIEDEVRPPLPVVKDTLCYYPQYY---------------- 87
                        +E  ++ D+ DEVR PLPVV++TL     YY                
Sbjct: 70  VAAQSWGAATGTGNERILQNDV-DEVRAPLPVVRETLYGESVYYGTMRVGNSQPEPNSLI 128

Query: 88  -------QQKNPEVWESEDNSEVWGSEEPSDNKNN--------NNNLASLYRPPVDLMFN 132
                  + K+P +WE ++      +   +    +         ++LASLYRPP  LMF+
Sbjct: 129 AFRNFSEEPKSPGIWEPDEGDSSASASASASASASASESASAPRDSLASLYRPPFHLMFH 188

Query: 133 GSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDD 192
           GSFE+AK   S ++KWLLVNLQS  EF+SH LNRDTWA++AVSQTI+A NFIFWQVY   
Sbjct: 189 GSFEQAKATSSSQDKWLLVNLQSTTEFSSHMLNRDTWANDAVSQTIKA-NFIFWQVY--- 244

Query: 193 DDDDDDSECRKVCGYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMESGPR 252
              DD +E RKVC YYKL+S+PVVLVIDP TG++MR W GMV+P +LLEDL+ FM+ GPR
Sbjct: 245 ---DDTTEGRKVCTYYKLESIPVVLVIDPTTGQRMRIWSGMVEPENLLEDLVPFMDGGPR 301

Query: 253 DQLERATKTQ------LPPYPPVHEQM--------------------------------- 273
           +     +K +      L P+    E +                                 
Sbjct: 302 EHFASLSKKRPRGSFSLAPHSKPKEDVAKDEEEEELQRALAASLEDNSMKESSDDQSTMT 361

Query: 274 -----------PAYPAVP---EEPLQVARNLVCRIGVRLPDGQ----------------- 302
                         P  P   EEP    R+L CR+G+RLP+GQ                 
Sbjct: 362 PEEVAVEAVTSAVLPTFPPLPEEPKGGDRSLQCRVGIRLPNGQRLQRNFLKTDTIQLLWS 421

Query: 303 -------EANQTRQFRLTRPDPGAPKPLDYNSKMTFQESGLNNSVILVTLE 346
                  E+ + +  +LT+  PG  K LDY S +T ++SG+ NS+I  T E
Sbjct: 422 FCYSQLEESERKKPLKLTQAIPGESKTLDYESNLTLEQSGVANSMISATWE 472

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224099647|ref|XP_002311564.1| predicted protein [Populus trichocarpa] gi|222851384|gb|EEE88931.1| predicted protein [Populus trichocarpa]

 Score =  249 bits (636), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 144/299 (48%), Positives = 174/299 (58%), Gaps = 60/299 (20%)

Query: 11  KRVISSFLEITNGQTEETALKILNATNWNLDKAILRF--NNNSNNIDEDEY----EVEVD 64
           + ++SSFLEI  GQT ETA + L AT+W L+ AI  F   N    +    +    E   D
Sbjct: 13  QSMVSSFLEIAVGQTAETARQFLQATSWKLEDAIQLFYVGNEGGVVASASHPPQTETRTD 72

Query: 65  IED-----------------EVRPPLPVVKDTLCYYPQYY-------------------- 87
           + +                 EVR PLPVV+DTL      Y                    
Sbjct: 73  VHESGLKDFGNENVGPGGGEEVRAPLPVVRDTLYDDAMLYGASRMGHPPHEASSLIAFRN 132

Query: 88  ---QQKNPEVWESEDNSEVWGSEEPSDNKNNNNNLASLYRPPVDLMFNGSFEKAKDVGSD 144
              + K+  VWES+  S        S   N  +NLASLYRPP  LMF+GSFEKAKD  S 
Sbjct: 133 FDEEMKHSGVWESDQGST-------STIDNPRDNLASLYRPPFHLMFHGSFEKAKDAASV 185

Query: 145 ENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKV 204
           ++KWLLVNLQS KEF+SH LNRDTWA+EAV+QTI ++NFIFWQVY      DD SE RKV
Sbjct: 186 QDKWLLVNLQSTKEFSSHMLNRDTWANEAVAQTI-STNFIFWQVY------DDTSEGRKV 238

Query: 205 CGYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMESGPRDQLERATKTQL 263
           C YYKLDS+PVVLVIDPITG+KM  W GMV P SLLEDL+ FM+ GPRD  +  +  +L
Sbjct: 239 CTYYKLDSIPVVLVIDPITGQKMHSWVGMVQPESLLEDLVPFMDGGPRDHHKTLSHKRL 297

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224111366|ref|XP_002315828.1| predicted protein [Populus trichocarpa] gi|222864868|gb|EEF01999.1| predicted protein [Populus trichocarpa]

 Score =  249 bits (636), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 142/283 (50%), Positives = 173/283 (61%), Gaps = 53/283 (18%)

Query: 11  KRVISSFLEITNGQTEETALKILNATNWNLDKAILRF--NNNSNNI-------------- 54
           + ++SSFLEI  GQT ETA + L AT+W L+ AI  F   N    +              
Sbjct: 11  QSMVSSFLEIAVGQTAETARQFLQATSWKLEDAIQLFYVGNEGGAVASASHPPPTETWPE 70

Query: 55  DEDEYEVEVDIEDEVRPPLPVVKDTL-----------CYYPQYY------------QQKN 91
           D +  +V     +EVR PLPVV+DTL             YP +             + K+
Sbjct: 71  DLENEKVGHSDGEEVRAPLPVVRDTLYDDAMLYGASRTGYPPHEASSLIAFRNFDEEMKH 130

Query: 92  PEVWESEDNSEVWGSEEPSDNKNNNNNLASLYRPPVDLMFNGSFEKAKDVGSDENKWLLV 151
           P VWES+  S        S   N+ +NLASLYRPP  LMF+GSFEKAK   S ++KWLLV
Sbjct: 131 PGVWESDQGST-------STTDNSRDNLASLYRPPFHLMFHGSFEKAKGAASVQDKWLLV 183

Query: 152 NLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLD 211
           NLQS KEF+SH LNRDTWA+EAV+QTI ++NFIFWQVY      DD SE +KVC YYKLD
Sbjct: 184 NLQSTKEFSSHMLNRDTWANEAVAQTI-STNFIFWQVY------DDTSEGQKVCTYYKLD 236

Query: 212 SLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMESGPRDQ 254
           S+PVVL+IDPITG+KM  W GMV P SLLEDL+ FM+ GPRD 
Sbjct: 237 SIPVVLIIDPITGQKMHSWVGMVQPESLLEDLVPFMDGGPRDH 279

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	346
TAIR|locus:2204497	468	AT1G14570 "AT1G14570" [Arabido	0.479	0.354	0.564	5.1e-68
ZFIN|ZDB-GENE-040704-8	505	ubxn7 "UBX domain protein 7" [	0.367	0.251	0.426	2.7e-29
UNIPROTKB|I3LQY9	476	UBXN7 "Uncharacterized protein	0.372	0.271	0.434	7.9e-29
UNIPROTKB|E2R9U7	489	UBXN7 "Uncharacterized protein	0.372	0.263	0.434	8.4e-29
UNIPROTKB|O94888	489	UBXN7 "UBX domain-containing p	0.372	0.263	0.434	8.4e-29
UNIPROTKB|E1BTX4	492	UBXN7 "Uncharacterized protein	0.367	0.258	0.433	1.9e-28
UNIPROTKB|F1MUA8	474	UBXN7 "Uncharacterized protein	0.372	0.272	0.434	5.3e-28
MGI|MGI:2146388	467	Ubxn7 "UBX domain protein 7" [	0.661	0.490	0.326	1.6e-26
POMBASE|SPAC2C4.15c	427	ubx2 "UBX domain protein Ubx2"	0.459	0.372	0.321	1.6e-22
TAIR|locus:2202872	307	AT1G59550 "AT1G59550" [Arabido	0.156	0.175	0.537	1.8e-21

TAIR|locus:2204497 AT1G14570 "AT1G14570" [Arabidopsis thaliana (taxid:3702)]

 Score = 487 (176.5 bits), Expect = 5.1e-68, Sum P(3) = 5.1e-68
 Identities = 100/177 (56%), Positives = 121/177 (68%)

Query:    88 QQKNPEVWE-SEDNSEVWGSEEPSDXXXXXX---XLASLYRPPVDLMFNGSFEKAKDVGS 143
             + K+P +WE  E +S    S   S           LASLYRPP  LMF GSFE+AK   S
Sbjct:   136 EPKSPGIWEPDEGDSSASASASASASESASAPRDSLASLYRPPFHLMFQGSFEQAKTTSS 195

Query:   144 DENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYXXXXXXXXXSECRK 203
              ++KWLLVNLQS  EF+SH LNRDTWA++AVSQTI+A NFIFWQVY         +E RK
Sbjct:   196 SQDKWLLVNLQSTTEFSSHMLNRDTWANDAVSQTIKA-NFIFWQVYDDT------TEGRK 248

Query:   204 VCGYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMESGPRDQLERATK 260
             VC YYKL+S+PVVLVIDP TG++MR W GMVDP +LLEDL+ FM+ GPR+     +K
Sbjct:   249 VCTYYKLESIPVVLVIDPTTGQRMRMWTGMVDPENLLEDLVPFMDGGPREHFASLSK 305

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0048573 "photoperiodism, flowering" evidence=RCA

ZFIN|ZDB-GENE-040704-8 ubxn7 "UBX domain protein 7" [Danio rerio (taxid:7955)]

 Score = 291 (107.5 bits), Expect = 2.7e-29, Sum P(2) = 2.7e-29
 Identities = 58/136 (42%), Positives = 85/136 (62%)

Query:   119 LASLYRPPVDLMFNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTI 178
             LA L+RPP++LM  GSFE AKD G  ENKWL++N+Q+ ++F    LNRD W+++AV   I
Sbjct:   140 LADLFRPPIELMHKGSFETAKDSGQLENKWLMINIQNVQDFACQCLNRDVWSNDAVKTII 199

Query:   179 RASNFIFWQVYXXXXXXXXXSECRKVCGYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVS 238
             R  +FIFWQVY          E ++   +YKL+  P + ++DP TG+KM +W   +D  S
Sbjct:   200 R-EHFIFWQVYHDS------EEGQRYIQFYKLNKFPYISILDPRTGQKMVEW-NQLDVSS 251

Query:   239 LLEDLLSFM-ESGPRD 253
              ++ +  F+ E G  D
Sbjct:   252 FMDQVTGFLSEHGQLD 267

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|I3LQY9 UBXN7 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 292 (107.8 bits), Expect = 7.9e-29, Sum P(2) = 7.9e-29
 Identities = 60/138 (43%), Positives = 85/138 (61%)

Query:   119 LASLYRPPVDLMFNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTI 178
             LA L+RPP+DLM  GSFE AK+ G  +NKWL++N+Q+ ++F    LNRD W++EAV   I
Sbjct:   125 LADLFRPPIDLMHKGSFETAKECGQMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNII 184

Query:   179 RASNFIFWQVYXXXXXXXXXSECRKVCGYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVS 238
             R  +FIFWQVY          E ++   +YKL   P V ++DP TG+K+ +W   +D  S
Sbjct:   185 R-EHFIFWQVYHDS------EEGQRYIQFYKLGDFPYVSILDPRTGQKLVEW-HQLDVSS 236

Query:   239 LLEDLLSFM-ESGPRDQL 255
              L+ +  F+ E G  D L
Sbjct:   237 FLDQVTGFLGEHGQLDGL 254

GO:0043130 "ubiquitin binding" evidence=IEA

GO:0034098 "Cdc48p-Npl4p-Ufd1p AAA ATPase complex" evidence=IEA

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IEA

UNIPROTKB|E2R9U7 UBXN7 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 292 (107.8 bits), Expect = 8.4e-29, Sum P(2) = 8.4e-29
 Identities = 60/138 (43%), Positives = 85/138 (61%)

Query:   119 LASLYRPPVDLMFNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTI 178
             LA L+RPP+DLM  GSFE AK+ G  +NKWL++N+Q+ ++F    LNRD W++EAV   I
Sbjct:   138 LADLFRPPIDLMHKGSFETAKECGQMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNII 197

Query:   179 RASNFIFWQVYXXXXXXXXXSECRKVCGYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVS 238
             R  +FIFWQVY          E ++   +YKL   P V ++DP TG+K+ +W   +D  S
Sbjct:   198 R-EHFIFWQVYHDS------EEGQRYIQFYKLGDFPYVSILDPRTGQKLVEW-HQLDVSS 249

Query:   239 LLEDLLSFM-ESGPRDQL 255
              L+ +  F+ E G  D L
Sbjct:   250 FLDQVTGFLGEHGQLDGL 267

GO:0043130 "ubiquitin binding" evidence=IEA

GO:0034098 "Cdc48p-Npl4p-Ufd1p AAA ATPase complex" evidence=IEA

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IEA

UNIPROTKB|O94888 UBXN7 "UBX domain-containing protein 7" [Homo sapiens (taxid:9606)]

 Score = 292 (107.8 bits), Expect = 8.4e-29, Sum P(2) = 8.4e-29
 Identities = 60/138 (43%), Positives = 85/138 (61%)

Query:   119 LASLYRPPVDLMFNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTI 178
             LA L+RPP+DLM  GSFE AK+ G  +NKWL++N+Q+ ++F    LNRD W++EAV   I
Sbjct:   138 LADLFRPPIDLMHKGSFETAKECGQMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNII 197

Query:   179 RASNFIFWQVYXXXXXXXXXSECRKVCGYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVS 238
             R  +FIFWQVY          E ++   +YKL   P V ++DP TG+K+ +W   +D  S
Sbjct:   198 R-EHFIFWQVYHDS------EEGQRYIQFYKLGDFPYVSILDPRTGQKLVEW-HQLDVSS 249

Query:   239 LLEDLLSFM-ESGPRDQL 255
              L+ +  F+ E G  D L
Sbjct:   250 FLDQVTGFLGEHGQLDGL 267

GO:0005515 "protein binding" evidence=IPI

GO:0008134 "transcription factor binding" evidence=IPI

GO:0043130 "ubiquitin binding" evidence=IDA

GO:0034098 "Cdc48p-Npl4p-Ufd1p AAA ATPase complex" evidence=IDA

GO:0031625 "ubiquitin protein ligase binding" evidence=IDA

UNIPROTKB|E1BTX4 UBXN7 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 291 (107.5 bits), Expect = 1.9e-28, Sum P(2) = 1.9e-28
 Identities = 59/136 (43%), Positives = 84/136 (61%)

Query:   119 LASLYRPPVDLMFNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTI 178
             LA L+RPP+DLM  GSFE AK+ G  +NKWL++N+Q+ ++F    LNRD W++EAV   I
Sbjct:   141 LADLFRPPIDLMHKGSFETAKECGQMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNII 200

Query:   179 RASNFIFWQVYXXXXXXXXXSECRKVCGYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVS 238
             R  +FIFWQVY          E ++   +YKL   P V ++DP TG+K+ +W   +D  S
Sbjct:   201 R-EHFIFWQVYHDS------EEGQRYIQFYKLADFPYVSILDPRTGQKLVEW-HQLDVTS 252

Query:   239 LLEDLLSFM-ESGPRD 253
              L+ +  F+ E G  D
Sbjct:   253 FLDQVTGFLSEHGQLD 268

GO:0008134 "transcription factor binding" evidence=IEA

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

GO:0034098 "Cdc48p-Npl4p-Ufd1p AAA ATPase complex" evidence=IEA

GO:0043130 "ubiquitin binding" evidence=IEA

UNIPROTKB|F1MUA8 UBXN7 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 291 (107.5 bits), Expect = 5.3e-28, Sum P(2) = 5.3e-28
 Identities = 60/138 (43%), Positives = 85/138 (61%)

Query:   119 LASLYRPPVDLMFNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTI 178
             LA L+RPP+DLM  GSFE AK+ G  +NKWL++N+Q+ ++F    LNRD W++EAV   I
Sbjct:   123 LADLFRPPIDLMHKGSFETAKECGQMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNII 182

Query:   179 RASNFIFWQVYXXXXXXXXXSECRKVCGYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVS 238
             R  +FIFWQVY          E ++   +YKL   P V ++DP TG+K+ +W   +D  S
Sbjct:   183 R-EHFIFWQVYHDS------EEGQRYIQFYKLGDFPYVSILDPRTGKKLVEW-HQLDVSS 234

Query:   239 LLEDLLSFM-ESGPRDQL 255
              L+ +  F+ E G  D L
Sbjct:   235 FLDQVTGFLGEHGQLDGL 252

GO:0043130 "ubiquitin binding" evidence=IEA

GO:0034098 "Cdc48p-Npl4p-Ufd1p AAA ATPase complex" evidence=IEA

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IEA

MGI|MGI:2146388 Ubxn7 "UBX domain protein 7" [Mus musculus (taxid:10090)]

 Score = 301 (111.0 bits), Expect = 1.6e-26, P = 1.6e-26
 Identities = 81/248 (32%), Positives = 118/248 (47%)

Query:    11 KRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNNNSNNXXXXXXXXXXXXXXXXR 70
             K +I  F  IT G +E     +L A N NL+ A+  F +                    R
Sbjct:    14 KGLIQQFTAIT-GASESVGKHMLEACNNNLEMAVTMFLDGGG--IAEEPSTSSASVSTVR 70

Query:    71 PPLPVVKDTLCYYPQYYQ-QKNPE-VWESEDNSEVWGSEEPSDXXXXXXXLASLYRPPVD 128
             P     ++     PQ  +    PE ++      E+               LA L+RPP+D
Sbjct:    71 PHTE--EEVRAPIPQKQEILVEPEPLFGVRQEQEL---RNGGAIDKKLTTLADLFRPPID 125

Query:   129 LMFNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQV 188
             LM  GSFE AK+ G  +NKWL++N+Q+ ++F    LNRD W++EAV   IR  +FIFWQV
Sbjct:   126 LMHKGSFETAKECGQMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIR-EHFIFWQV 184

Query:   189 YXXXXXXXXXSECRKVCGYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFM- 247
             Y          E ++   +YKL   P V ++DP TG+K+ +W   +D  S L+ +  F+ 
Sbjct:   185 YHDS------EEGQRYIQFYKLGDFPYVSILDPRTGQKLVEW-HQLDVSSFLDQVTGFLG 237

Query:   248 ESGPRDQL 255
             E G  D L
Sbjct:   238 EHGQLDGL 245

GO:0008134 "transcription factor binding" evidence=ISO

GO:0008150 "biological_process" evidence=ND

GO:0031625 "ubiquitin protein ligase binding" evidence=ISO

GO:0034098 "Cdc48p-Npl4p-Ufd1p AAA ATPase complex" evidence=ISO

GO:0043130 "ubiquitin binding" evidence=ISO

POMBASE|SPAC2C4.15c ubx2 "UBX domain protein Ubx2" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 236 (88.1 bits), Expect = 1.6e-22, Sum P(2) = 1.6e-22
 Identities = 54/168 (32%), Positives = 87/168 (51%)

Query:    87 YQQKNPEVWESEDNSEVWGSEEPSDXXXXXXXLASLYRPPVDLMFNGSFEKAKDVGSDEN 146
             + Q   ++     N+E   S E SD       LA L+RPP D++ N S ++A+   S + 
Sbjct:   115 FDQSPSQIPFPSSNTE--DSSEESDSSSRASRLAKLFRPPYDIISNLSLDEARIEASSQK 172

Query:   147 KWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYXXXXXXXXXSECRKVCG 206
             +W+LVNLQ+   F    LNRD W DE+V + IRA +F+F Q+           E ++   
Sbjct:   173 RWILVNLQTSTSFECQVLNRDLWKDESVKEVIRA-HFLFLQLLDDEEPGM---EFKR--- 225

Query:   207 YYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMESGPRDQ 254
             +Y + S P + ++DP TGE++++W     P   +  L  F+E    D+
Sbjct:   226 FYPVRSTPHIAILDPRTGERVKEWSKSFTPADFVIALNDFLEGCTLDE 273

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=ISO

GO:0033554 "cellular response to stress" evidence=IEP

GO:0043130 "ubiquitin binding" evidence=IPI

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=IGI

TAIR|locus:2202872 AT1G59550 "AT1G59550" [Arabidopsis thaliana (taxid:3702)]

 Score = 158 (60.7 bits), Expect = 1.8e-21, Sum P(3) = 1.8e-21
 Identities = 29/54 (53%), Positives = 40/54 (74%)

Query:   125 PPVDLMFNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTI 178
             PP++L+FNGSFE AK   S ++ WLLV++QS  EF  +T NRD W++E VSQ +
Sbjct:    72 PPLNLLFNGSFEDAKLASSSKDLWLLVHIQSETEFPCNTFNRDLWSNEDVSQAL 125

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	346
cd02958	114	cd02958, UAS, UAS family; UAS is a domain of unkno	6e-45
smart00594	122	smart00594, UAS, UAS domain	3e-35
pfam13899	81	pfam13899, Thioredoxin_7, Thioredoxin-like	3e-07

>gnl|CDD|239256 cd02958, UAS, UAS family; UAS is a domain of unknown function

 Score =  149 bits (378), Expect = 6e-45
 Identities = 56/120 (46%), Positives = 70/120 (58%), Gaps = 7/120 (5%)

Query: 130 MFNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVY 189
            F GSFE AK     E KWLLV LQS  EF S  LNRD W++E+V + IR  NFIFWQ  
Sbjct: 1   FFQGSFEDAKQEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRE-NFIFWQC- 58

Query: 190 DDDDDDDDDSECRKVCGYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMES 249
                D D SE ++    YK+D  P + +IDP TGE ++ W G + P  LL  L+ F+E 
Sbjct: 59  -----DIDSSEGQRFLQSYKVDKYPHIAIIDPRTGEVLKVWSGNITPEDLLSQLIEFLEE 113

Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP), which is involved in the ubiquitin-proteosome pathway. Some members of this family are uncharacterized proteins containing only a UAS domain. Length = 114

>gnl|CDD|214737 smart00594, UAS, UAS domain

 Score =  124 bits (313), Expect = 3e-35
 Identities = 53/129 (41%), Positives = 74/129 (57%), Gaps = 8/129 (6%)

Query: 121 SLYRPPV-DLMFNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIR 179
            L+RPP   L + GS E AK   S + + L + L S     S   NRD   +EAV   IR
Sbjct: 1   KLFRPPYGPLFYQGSLEAAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIR 60

Query: 180 ASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSL 239
             NFIFWQV      D D SE ++V  +YKLDS P V ++DP TG+++ +W G+V+    
Sbjct: 61  E-NFIFWQV------DVDTSEGQRVSQFYKLDSFPYVAIVDPRTGQRVIEWVGVVEGEIS 113

Query: 240 LEDLLSFME 248
            E+L++F+E
Sbjct: 114 PEELMTFLE 122

Length = 122

>gnl|CDD|222442 pfam13899, Thioredoxin_7, Thioredoxin-like

 Score = 47.3 bits (113), Expect = 3e-07
 Identities = 21/87 (24%), Positives = 35/87 (40%), Gaps = 11/87 (12%)

Query: 135 FEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDD 194
            ++A     +E K LLV+  +    T   L+RD  +D  V     A  F+  +V     D
Sbjct: 6   LDEALAKAREEGKPLLVDFGADWCPTCQALDRDFLSDPRVK--ALAEKFVLLRVDVTTRD 63

Query: 195 DDDDSECRKVCGYYKLDSLPVVLVIDP 221
            +   +     G      +P V+ +DP
Sbjct: 64  PNLLLD-----GQG----VPHVVFLDP 81

Thioredoxins are small enzymes that participate in redox reactions, via the reversible oxidation of an active centre disulfide bond. Length = 81

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	346
KOG1364	356	consensus Predicted ubiquitin regulatory protein,	100.0
smart00594	122	UAS UAS domain.	99.95
cd02991	116	UAS_ETEA UAS family, ETEA subfamily; composed of p	99.95
cd02958	114	UAS UAS family; UAS is a domain of unknown functio	99.94
cd02990	136	UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1	99.93
KOG1363	460	consensus Predicted regulator of the ubiquitin pat	99.7
PF13899	82	Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_	99.51
KOG2507	506	consensus Ubiquitin regulatory protein UBXD2, cont	99.47
cd01770	79	p47_UBX p47-like ubiquitin domain. p47_UBX p47 is	99.47
cd02955	124	SSP411 TRX domain, SSP411 protein family; members	99.35
cd02960	130	AGR Anterior Gradient (AGR) family; members of thi	99.35
PF14555	43	UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A	99.34
cd02951	125	SoxW SoxW family; SoxW is a bacterial periplasmic	99.29
cd01767	77	UBX UBX (ubiquitin regulatory X) domain. The UBX (	99.21
cd01774	85	Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 i	99.18
KOG2086	380	consensus Protein tyrosine phosphatase SHP1/Cofact	99.16
cd02953	104	DsbDgamma DsbD gamma family; DsbD gamma is the C-t	99.11
cd01773	82	Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 i	99.01
smart00166	80	UBX Domain present in ubiquitin-regulatory protein	98.99
cd01771	80	Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated fac	98.96
PF03190	163	Thioredox_DsbH: Protein of unknown function, DUF25	98.94
PF13098	112	Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_	98.9
PF00789	82	UBX: UBX domain; InterPro: IPR001012 The UBX domai	98.9
PRK00293	571	dipZ thiol:disulfide interchange protein precursor	98.84
cd01772	79	SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-subst	98.81
cd02959	117	ERp19 Endoplasmic reticulum protein 19 (ERp19) fam	98.77
COG2143	182	Thioredoxin-related protein [Posttranslational mod	98.67
cd02950	142	TxlA TRX-like protein A (TxlA) family; TxlA was or	98.61
cd02985	103	TRX_CDSP32 TRX family, chloroplastic drought-induc	98.43
cd02956	96	ybbN ybbN protein family; ybbN is a hypothetical p	98.33
KOG0910	150	consensus Thioredoxin-like protein [Posttranslatio	98.28
COG4232	569	Thiol:disulfide interchange protein [Posttranslati	98.25
cd02949	97	TRX_NTR TRX domain, novel NADPH thioredoxin reduct	98.19
PF00085	103	Thioredoxin: Thioredoxin; InterPro: IPR013766 Thio	98.11
PRK10996	139	thioredoxin 2; Provisional	98.09
cd02997	104	PDI_a_PDIR PDIa family, PDIR subfamily; composed o	98.06
cd02963	111	TRX_DnaJ TRX domain, DnaJ domain containing protei	98.04
cd02993	109	PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfat	98.04
cd02984	97	TRX_PICOT TRX domain, PICOT (for PKC-interacting c	98.01
COG1331	667	Highly conserved protein containing a thioredoxin	97.98
TIGR00385	173	dsbE periplasmic protein thiol:disulfide oxidoredu	97.97
cd03002	109	PDI_a_MPD1_like PDI family, MPD1-like subfamily; c	97.91
cd03006	113	PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamil	97.89
cd02961	101	PDI_a_family Protein Disulfide Isomerase (PDIa) fa	97.85
KOG0907	106	consensus Thioredoxin [Posttranslational modificat	97.82
cd02947	93	TRX_family TRX family; composed of two groups: Gro	97.8
PHA02278	103	thioredoxin-like protein	97.8
PLN00410	142	U5 snRNP protein, DIM1 family; Provisional	97.79
TIGR01126	102	pdi_dom protein disulfide-isomerase domain. This m	97.79
TIGR01068	101	thioredoxin thioredoxin. Several proteins, such as	97.79
PRK09381	109	trxA thioredoxin; Provisional	97.78
cd02948	102	TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fus	97.77
cd03000	104	PDI_a_TMX3 PDIa family, TMX3 subfamily; composed o	97.75
cd03011	123	TlpA_like_ScsD_MtbDsbE TlpA-like family, suppresso	97.71
cd02996	108	PDI_a_ERp44 PDIa family, endoplasmic reticulum pro	97.68
cd03004	104	PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfam	97.67
cd02999	100	PDI_a_ERp44_like PDIa family, endoplasmic reticulu	97.63
PRK15412	185	thiol:disulfide interchange protein DsbE; Provisio	97.62
cd03003	101	PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfam	97.6
TIGR02740	271	TraF-like TraF-like protein. This protein is relat	97.59
PTZ00051	98	thioredoxin; Provisional	97.57
cd02994	101	PDI_a_TMX PDIa family, TMX subfamily; composed of	97.55
cd02986	114	DLP Dim1 family, Dim1-like protein (DLP) subfamily	97.52
KOG2689	290	consensus Predicted ubiquitin regulatory protein [	97.51
cd02995	104	PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain	97.51
cd02998	105	PDI_a_ERp38 PDIa family, endoplasmic reticulum pro	97.51
TIGR01295	122	PedC_BrcD bacteriocin transport accessory protein,	97.48
PRK03147	173	thiol-disulfide oxidoreductase; Provisional	97.48
cd02954	114	DIM1 Dim1 family; Dim1 is also referred to as U5 s	97.42
cd03005	102	PDI_a_ERp46 PDIa family, endoplasmic reticulum pro	97.41
cd02957	113	Phd_like Phosducin (Phd)-like family; composed of	97.41
cd03001	103	PDI_a_P5 PDIa family, P5 subfamily; composed of eu	97.36
cd03065	120	PDI_b_Calsequestrin_N PDIb family, Calsequestrin s	97.32
cd02987	175	Phd_like_Phd Phosducin (Phd)-like family, Phd subf	97.29
PTZ00443	224	Thioredoxin domain-containing protein; Provisional	97.28
TIGR02738	153	TrbB type-F conjugative transfer system pilin asse	97.21
cd02989	113	Phd_like_TxnDC9 Phosducin (Phd)-like family, Thior	97.18
cd03010	127	TlpA_like_DsbE TlpA-like family, DsbE (also known	97.13
smart00804	63	TAP_C C-terminal domain of vertebrate Tap protein.	97.12
cd02966	116	TlpA_like_family TlpA-like family; composed of Tlp	97.1
cd03009	131	TryX_like_TryX_NRX Tryparedoxin (TryX)-like family	97.04
cd02992	114	PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidas	96.97
cd02975	113	PfPDO_like_N Pyrococcus furiosus protein disulfide	96.97
TIGR00424	463	APS_reduc 5'-adenylylsulfate reductase, thioredoxi	96.95
TIGR02739	256	TraF type-F conjugative transfer system pilin asse	96.91
PF03943	51	TAP_C: TAP C-terminal domain; InterPro: IPR005637	96.91
cd02982	103	PDI_b'_family Protein Disulfide Isomerase (PDIb')	96.89
PRK13703	248	conjugal pilus assembly protein TraF; Provisional	96.88
PTZ00102	477	disulphide isomerase; Provisional	96.87
TIGR01130	462	ER_PDI_fam protein disulfide isomerases, eukaryoti	96.82
cd02962	152	TMX2 TMX2 family; composed of proteins similar to	96.8
cd02952	119	TRP14_like Human TRX-related protein 14 (TRP14)-li	96.78
cd02965	111	HyaE HyaE family; HyaE is also called HupG and Hox	96.73
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	96.58
PF13728	215	TraF: F plasmid transfer operon protein	96.55
PRK14018	521	trifunctional thioredoxin/methionine sulfoxide red	96.51
cd02964	132	TryX_like_family Tryparedoxin (TryX)-like family;	96.44
PTZ00102	477	disulphide isomerase; Provisional	96.43
PLN02309	457	5'-adenylylsulfate reductase	96.43
PF00627	37	UBA: UBA/TS-N domain; InterPro: IPR000449 UBA doma	96.42
cd00194	38	UBA Ubiquitin Associated domain. The UBA domain is	96.38
cd03008	146	TryX_like_RdCVF Tryparedoxin (TryX)-like family, R	96.35
cd02969	171	PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypot	96.31
smart00165	37	UBA Ubiquitin associated domain. Present in Rad23,	96.27
PTZ00062	204	glutaredoxin; Provisional	96.23
TIGR02187	215	GlrX_arch Glutaredoxin-like domain protein. This f	96.09
PRK13728	181	conjugal transfer protein TrbB; Provisional	96.07
PLN02412	167	probable glutathione peroxidase	96.04
KOG0908	288	consensus Thioredoxin-like protein [Posttranslatio	95.99
PF13905	95	Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_	95.98
cd02988	192	Phd_like_VIAF Phosducin (Phd)-like family, Viral i	95.77
TIGR02661	189	MauD methylamine dehydrogenase accessory protein M	95.72
PTZ00056	199	glutathione peroxidase; Provisional	95.68
cd03012	126	TlpA_like_DipZ_like TlpA-like family, DipZ-like su	95.66
cd03017	140	PRX_BCP Peroxiredoxin (PRX) family, Bacterioferrit	95.61
PLN02399	236	phospholipid hydroperoxide glutathione peroxidase	95.44
KOG2244	786	consensus Highly conserved protein containing a th	95.42
cd02967	114	mauD Methylamine utilization (mau) D family; mauD	95.0
TIGR01130	462	ER_PDI_fam protein disulfide isomerases, eukaryoti	94.99
cd00340	152	GSH_Peroxidase Glutathione (GSH) peroxidase family	94.92
PRK15000	200	peroxidase; Provisional	94.39
TIGR03137	187	AhpC peroxiredoxin. This gene contains two invaria	94.3
cd03015	173	PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-	94.29
KOG2501	157	consensus Thioredoxin, nucleoredoxin and related p	94.25
PHA02125	75	thioredoxin-like protein	94.24
cd03007	116	PDI_a_ERp29_N PDIa family, endoplasmic reticulum p	94.16
TIGR00411	82	redox_disulf_1 small redox-active disulfide protei	94.1
PRK09437	154	bcp thioredoxin-dependent thiol peroxidase; Review	93.81
TIGR02540	153	gpx7 putative glutathione peroxidase Gpx7. This mo	93.49
PF08534	146	Redoxin: Redoxin; InterPro: IPR013740 This redoxin	93.42
PRK11509	132	hydrogenase-1 operon protein HyaE; Provisional	93.38
PRK10382	187	alkyl hydroperoxide reductase subunit C; Provision	93.29
PTZ00253	199	tryparedoxin peroxidase; Provisional	93.11
COG3118	304	Thioredoxin domain-containing protein [Posttransla	92.72
TIGR00412	76	redox_disulf_2 small redox-active disulfide protei	92.21
PF02845	42	CUE: CUE domain; InterPro: IPR003892 This domain m	92.01
KOG1364	356	consensus Predicted ubiquitin regulatory protein,	91.76
PRK00522	167	tpx lipid hydroperoxide peroxidase; Provisional	91.44
smart00546	43	CUE Domain that may be involved in binding ubiquit	91.34
TIGR02187	215	GlrX_arch Glutaredoxin-like domain protein. This f	91.24
PF00578	124	AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Per	90.76
KOG4351	244	consensus Uncharacterized conserved protein [Funct	90.5
PTZ00137	261	2-Cys peroxiredoxin; Provisional	90.06
KOG0912	375	consensus Thiol-disulfide isomerase and thioredoxi	89.56
PRK13189	222	peroxiredoxin; Provisional	88.69
KOG0191	383	consensus Thioredoxin/protein disulfide isomerase	88.57
TIGR00264	116	alpha-NAC-related protein. This hypothetical prote	88.55
PRK13190	202	putative peroxiredoxin; Provisional	88.38
cd02971	140	PRX_family Peroxiredoxin (PRX) family; composed of	87.85
PTZ00256	183	glutathione peroxidase; Provisional	87.8
PRK06369	115	nac nascent polypeptide-associated complex protein	87.63
cd02968	142	SCO SCO (an acronym for Synthesis of Cytochrome c	87.11
PF13848	184	Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_	86.67
PRK13191	215	putative peroxiredoxin; Provisional	86.66
cd03026	89	AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxid	86.47
TIGR01626	184	ytfJ_HI0045 conserved hypothetical protein YtfJ-fa	86.24
KOG3763	585	consensus mRNA export factor TAP/MEX67 [RNA proces	85.26
KOG0190	493	consensus Protein disulfide isomerase (prolyl 4-hy	85.21
cd01659	69	TRX_superfamily Thioredoxin (TRX) superfamily; a l	85.03
PF11543	80	UN_NPL4: Nuclear pore localisation protein NPL4; I	83.86
cd02983	130	P5_C P5 family, C-terminal redox inactive TRX-like	83.02
PF02114	265	Phosducin: Phosducin; InterPro: IPR024253 The oute	82.96
cd03018	149	PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-lik	82.92
PRK13599	215	putative peroxiredoxin; Provisional	82.32
cd03016	203	PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX sub	81.79
cd03014	143	PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical	81.18

>KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.2e-42  Score=328.79  Aligned_cols=283  Identities=33%  Similarity=0.582  Sum_probs=213.1

Q ss_pred             hhHHHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhhcCCCCCCcccccccccCCCCCCCCCCccccccCCcccc
Q 036413            8 KQRKRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNNNSNNIDEDEYEVEVDIEDEVRPPLPVVKDTLCYYPQYY   87 (346)
Q Consensus         8 ~~~~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~~~~~~~~d~~~~~~~~~~~vraP~~~~~e~L~~~~~~~   87 (346)
                      .++.++|.+|++||..++.+.|++||++++|||+.||++||++++..      ..+.+...+..|++.++++|+..-...
T Consensus         4 ~~~~~lv~~fl~It~~~t~e~A~q~L~~~~~~le~ai~Lffe~~~~~------~~~s~~~~a~sp~~~~re~l~~~~~~~   77 (356)
T KOG1364|consen    4 GAQRALVSKFLAITVQQTVEIATQYLSAADWDLEAAINLFFEHGGFT------QVYSSSSAAPSPIEPQREVLFDPLGIM   77 (356)
T ss_pred             chHHHHHHHHHHHhccccHHHHHHHHHhcCCcHHHHHHHHHHhcccc------cccCCcccCCCcccccceeeecccccc
Confidence            46788999999996559999999999999999999999999987642      222234445569999999998752200


Q ss_pred             cCC-CCccccCCCCccccCCCCCCCcchhhHHHHhhcCCCcccccccCHHHHHHHhhhcCcEEEEEecCCCCcccccccc
Q 036413           88 QQK-NPEVWESEDNSEVWGSEEPSDNKNNNNNLASLYRPPVDLMFNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNR  166 (346)
Q Consensus        88 ~~~-~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~~lf~PP~~l~~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnR  166 (346)
                      -.. ....+..    ..+.+  .+.-.+...+|+.||+||++||+.|+|+.|+..|.++.+||||               
T Consensus        78 d~~~~s~~~p~----~~~~~--~s~~~~~~srL~slfrpp~~i~~~gsld~ak~~a~sk~~wllV---------------  136 (356)
T KOG1364|consen   78 DQSTSSILDPS----ENQDD--ESEHASSQSRLASLFRPPTDILSHGSLDAAKSTASSKQRWLLV---------------  136 (356)
T ss_pred             ccCcccccCcc----cccch--hhhhccccchhhhhcCCCcchhhcCChhhhhhcccccceEEEE---------------
Confidence            000 0000000    00110  0111344679999999999999999999999999999999999               


Q ss_pred             ccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHH
Q 036413          167 DTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSF  246 (346)
Q Consensus       167 dvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~f  246 (346)
                                            +.+      +.||+++..+|++.+.|||+||||+||++|++|.|.+.|+.|++.|.+|
T Consensus       137 ----------------------~~D------tseg~~~~~Fy~~~~~P~i~iiDp~Tge~v~~ws~vi~~~~fl~~l~~F  188 (356)
T KOG1364|consen  137 ----------------------LDD------TSEGQPFSAFYHISSLPHIAIIDPITGERVKRWSGVIEPEQFLSDLNEF  188 (356)
T ss_pred             ----------------------eec------cCCCCchhhheeccCCceEEEECCchhhhhhhhccccCHHHHHHHHHHH
Confidence                                  123      8899999999999999999999999999999999999999999999999


Q ss_pred             HHcCCccccc---cCc----cC---CCC-CC--------------------C-----CcC-------cCCCCCCCCCCCC
Q 036413          247 MESGPRDQLE---RAT----KT---QLP-PY--------------------P-----PVH-------EQMPAYPAVPEEP  283 (346)
Q Consensus       247 l~~~~~~~~~---~~~----~~---~l~-e~--------------------~-----~~e-------~~~~~~~~~~~EP  283 (346)
                      ++.+++++++   +++    ..   .++ |.                    +     +.|       ...-.++.+..||
T Consensus       189 i~~~~~d~vas~t~n~~~p~~e~~~~ss~e~~~~elai~~sv~~~~~~~e~e~~~~s~~ee~e~~~e~~~~~~~~a~~ep  268 (356)
T KOG1364|consen  189 IDSCPHDEVASLTRNRKRPKTEPTCLSSEEDMQMELAIKNSVVNPSSGTEFEGQGASDEEELETVLEEDLFVFPVATVEP  268 (356)
T ss_pred             HhcCCccccccccccccCCCCCccccccccchhhhcccccccccCCCcccccCCCCcccchhhccccccccccceeeecC
Confidence            9999999776   222    11   111 00                    0     001       1112345555666


Q ss_pred             CC-CCCCCeeEEEEEcCCCccc-----------------------cCCcceEEecCCCCCCCCccCCcccchhhcCCCce
Q 036413          284 LQ-VARNLVCRIGVRLPDGQEA-----------------------NQTRQFRLTRPDPGAPKPLDYNSKMTFQESGLNNS  339 (346)
Q Consensus       284 ~~-~~~~~~trIqiRlpdG~ri-----------------------~~~~~f~l~~~~P~~~~~l~~~~d~TieeagL~n~  339 (346)
                      .. .+++.+|+||||+|||+|.                       .....|+|+.+|| +.|.|.++.|.||+||||+|+
T Consensus       269 ~~~~~~svvt~i~vR~pdG~R~qrkf~~sepv~ll~~~~~s~~dg~~k~~FkLv~a~P-~~k~l~~~~daT~~eaGL~nS  347 (356)
T KOG1364|consen  269 KGDCDRSVVTSIQVRFPDGRRKQRKFLKSEPVQLLWSFCYSHMDGSDKKRFKLVQAIP-ASKTLDYGADATFKEAGLANS  347 (356)
T ss_pred             CCCCCccceeEEEEecCCccHHHHhhccccHHHHHHHHHHHhhcccccccceeeeccc-chhhhhccccchHHHhccCcc
Confidence            65 3677899999999999996                       1357999999999 568999999999999999999


Q ss_pred             --eEEEEeC
Q 036413          340 --VILVTLE  346 (346)
Q Consensus       340 --~vl~~~~  346 (346)
                        .+.+.|+
T Consensus       348 ~~~~~~e~e  356 (356)
T KOG1364|consen  348 ETLLSVEWE  356 (356)
T ss_pred             ccccccccC
Confidence              5555553

>smart00594 UAS UAS domain

Probab=99.95  E-value=7.8e-28  Score=202.48  Aligned_cols=115  Identities=43%  Similarity=0.701  Sum_probs=108.0

Q ss_pred             hcCCCc-ccccccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChH
Q 036413          122 LYRPPV-DLMFNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSE  200 (346)
Q Consensus       122 lf~PP~-~l~~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~e  200 (346)
                      +|.||+ ++||.|||++|++.|++++|++|||||+++|..|+.|||+||+|+.|+++|+ +|||+|+++++      +++
T Consensus         2 ~~~~~~~~~f~~gs~~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~-~~fv~~~~dv~------~~e   74 (122)
T smart00594        2 LFRPPYGPLFYQGSLEAAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIR-ENFIFWQVDVD------TSE   74 (122)
T ss_pred             CCCCCCCCceeeCCHHHHHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHH-cCEEEEEecCC------Chh
Confidence            577888 8899999999999999999999999999999999999999999999999999 99999999999      999


Q ss_pred             HHHHHhhcCCCCCceEEEEeCCCCce----EEEEeCCCChHHHHHHH
Q 036413          201 CRKVCGYYKLDSLPVVLVIDPITGEK----MRKWCGMVDPVSLLEDL  243 (346)
Q Consensus       201 g~~~~~~y~~~~~P~i~iidp~tge~----l~~~~G~~~~~~~i~~L  243 (346)
                      |.++++.|++.+||+++||+|++|+.    +.+++|.+++++|+..|
T Consensus        75 g~~l~~~~~~~~~P~~~~l~~~~g~~~~~~~~~~~G~~~~~~l~~~l  121 (122)
T smart00594       75 GQRVSQFYKLDSFPYVAIVDPRTGQRVIEWVGVVEGEISPEELMTFL  121 (122)
T ss_pred             HHHHHHhcCcCCCCEEEEEecCCCceeEEEeccccCCCCHHHHHHhh
Confidence            99999999999999999999998764    34568999999999877

>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals

Probab=99.95  E-value=2.3e-27  Score=198.47  Aligned_cols=114  Identities=19%  Similarity=0.375  Sum_probs=108.4

Q ss_pred             ccccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcC
Q 036413          130 MFNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYK  209 (346)
Q Consensus       130 ~~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~  209 (346)
                      ||+|||++|++.||++.||||||||++.|.+|..+||+||+|++|+++|+ +|||+|++|++      ++||.++++.++
T Consensus         1 ff~gs~~eAl~~ak~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~ln-~~fv~w~~dv~------~~eg~~la~~l~   73 (116)
T cd02991           1 FYQGTYSQALNDAKQELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYIN-TRMLFWACSVA------KPEGYRVSQALR   73 (116)
T ss_pred             CCcCcHHHHHHHHHhhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHHH-cCEEEEEEecC------ChHHHHHHHHhC
Confidence            68999999999999999999999999999999999999999999999999 99999999999      999999999999


Q ss_pred             CCCCceEEEEeCCCCc--eEEEEeCCCChHHHHHHHHHHHHcC
Q 036413          210 LDSLPVVLVIDPITGE--KMRKWCGMVDPVSLLEDLLSFMESG  250 (346)
Q Consensus       210 ~~~~P~i~iidp~tge--~l~~~~G~~~~~~~i~~L~~fl~~~  250 (346)
                      +.+||+++||+|+.++  .+.+++|.++|++|+..|..+++++
T Consensus        74 ~~~~P~~~~l~~~~~~~~vv~~i~G~~~~~~ll~~L~~~~~~~  116 (116)
T cd02991          74 ERTYPFLAMIMLKDNRMTIVGRLEGLIQPEDLINRLTFIMDAN  116 (116)
T ss_pred             CCCCCEEEEEEecCCceEEEEEEeCCCCHHHHHHHHHHHHhcC
Confidence            9999999999987654  4678999999999999999998764

ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.

>cd02958 UAS UAS family; UAS is a domain of unknown function

Probab=99.94  E-value=1.7e-26  Score=191.35  Aligned_cols=113  Identities=49%  Similarity=0.870  Sum_probs=110.1

Q ss_pred             ccccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcC
Q 036413          130 MFNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYK  209 (346)
Q Consensus       130 ~~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~  209 (346)
                      ||.|+|++|++.||+++||||||||+++|..|+.|+|+||+++.|+++|+ +|||+|.++++      +++|.+++..|+
T Consensus         1 f~~gs~~~a~~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~-~~~v~~~~d~~------~~e~~~~~~~~~   73 (114)
T cd02958           1 FFQGSFEDAKQEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIR-ENFIFWQCDID------SSEGQRFLQSYK   73 (114)
T ss_pred             CccCCHHHHHHHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHH-hCEEEEEecCC------CccHHHHHHHhC
Confidence            58999999999999999999999999999999999999999999999999 99999999999      899999999999


Q ss_pred             CCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHHc
Q 036413          210 LDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMES  249 (346)
Q Consensus       210 ~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~~  249 (346)
                      +..+|++++|+|++|+.+.++.|.+++++|++.|.++++.
T Consensus        74 ~~~~P~~~~i~~~~g~~l~~~~G~~~~~~f~~~L~~~~~~  113 (114)
T cd02958          74 VDKYPHIAIIDPRTGEVLKVWSGNITPEDLLSQLIEFLEE  113 (114)
T ss_pred             ccCCCeEEEEeCccCcEeEEEcCCCCHHHHHHHHHHHHhc
Confidence            9999999999998899999999999999999999998875

Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),

>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain

Probab=99.93  E-value=2.7e-25  Score=190.10  Aligned_cols=114  Identities=25%  Similarity=0.291  Sum_probs=104.6

Q ss_pred             ccccCHHHHHHHh----hhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChH-----
Q 036413          130 MFNGSFEKAKDVG----SDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSE-----  200 (346)
Q Consensus       130 ~~~gsf~~A~~~A----k~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~e-----  200 (346)
                      ||.|+|++|++.|    |++.|+|+||||++.+.+|..|||+|+||+.|++||+ +|||+|+||++      .++     
T Consensus         1 F~~Gs~~~Al~~A~~~~~~e~K~L~VYLH~~~~~~t~~Fc~~~L~se~Vi~fl~-~nfv~Wg~dvt------~~~~~~~f   73 (136)
T cd02990           1 FFIGSLEAAFQEACYRKARDRKLLAIYLHHDESVLSNVFCSQLLCAESIVQYLS-QNFITWGWDMT------KESNKARF   73 (136)
T ss_pred             CccCcHHHHHHHHhhhhhhhcceEEEEEcCCCCccHHHHHHHHhcCHHHHHHHH-cCEEEEeeecc------chhhhhHH
Confidence            6899999999999    9999999999999999999999999999999999999 99999999999      554     


Q ss_pred             -----------HHHHHhhcCCCCCceEEEEeCCCC--ceEEEEeCCCChHHHHHHHHHHHHcC
Q 036413          201 -----------CRKVCGYYKLDSLPVVLVIDPITG--EKMRKWCGMVDPVSLLEDLLSFMESG  250 (346)
Q Consensus       201 -----------g~~~~~~y~~~~~P~i~iidp~tg--e~l~~~~G~~~~~~~i~~L~~fl~~~  250 (346)
                                 +.+.++.+++++||+++||.+..+  +.+.+++|.++|++++++|.+.++.|
T Consensus        74 l~~~~~~~g~~a~~~~~~~~~~~fP~~avI~~~~~~~~vl~~i~G~~~~~ell~~L~~~ve~~  136 (136)
T cd02990          74 LSSCTRHFGSVAAQTIRNIKTDQLPAILIIMGKRSSNEVLNVIQGNTGVDELLMRLIEAMEMF  136 (136)
T ss_pred             HHhhhhhhhHHHHHHHHhcCcCCCCeEEEEEecCCceEEEEEEECCCCHHHHHHHHHHHHhcC
Confidence                       666788899999999999997544  56677899999999999999998864

FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear

>KOG1363 consensus Predicted regulator of the ubiquitin pathway (contains UAS and UBX domains) [Signal transduction mechanisms]

Probab=99.70  E-value=1.1e-17  Score=168.44  Aligned_cols=222  Identities=20%  Similarity=0.287  Sum_probs=161.9

Q ss_pred             hhhHHHHhhcCCCcccccccCHHHHHHHhhhcC----cEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEee
Q 036413          114 NNNNNLASLYRPPVDLMFNGSFEKAKDVGSDEN----KWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVY  189 (346)
Q Consensus       114 ~~~~~l~~lf~PP~~l~~~gsf~~A~~~Ak~~~----K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~  189 (346)
                      ++...|.+.|+.+++.||.|.+..|...|.+..    |.|++|||++...+...||+.|+||+.|++||+ +|||+|.|+
T Consensus       146 ~f~~~f~~ry~~~~p~F~~d~l~~a~~~A~~~~~~~~~~l~~~~~~~~~~~~~~F~~~iL~~e~v~~~l~-~~~llw~~d  224 (460)
T KOG1363|consen  146 TFVDNFGDRYGSELPSFYTDVLRNAFLEAFDRESEARKLLAIYLHDDKSDDTNVFCGQILCNEAVVDYLR-ENFLLWGWD  224 (460)
T ss_pred             HHHHHHHHhcCCCCCccchhHHHHHHHHHHhhhhhhheeeEEecCCCCcccHHHHHHhhhhhHHHHHHHh-hceeeeccc
Confidence            378899999999999999999999988886655    999999999999999999999999999999999 999999999


Q ss_pred             cCCCCCCCChHHHHHHhhcCCC----------------CCceEEEEeC-CCC-ceEEEEeCCCChHHHHHHHHHHHHcCC
Q 036413          190 DDDDDDDDDSECRKVCGYYKLD----------------SLPVVLVIDP-ITG-EKMRKWCGMVDPVSLLEDLLSFMESGP  251 (346)
Q Consensus       190 ~~~~~~~~~~eg~~~~~~y~~~----------------~~P~i~iidp-~tg-e~l~~~~G~~~~~~~i~~L~~fl~~~~  251 (346)
                      +.      +++|..+.+.+.+.                .||.+.|+-- ++. |++..++|.++..+.+..+..+++.++
T Consensus       225 vt------~~e~~~~~~~~~~r~~~~~~~~~~~~~~~~~fP~~~iv~~~~~~~Ell~~l~g~~~~~e~~~~~~~~~~~~~  298 (460)
T KOG1363|consen  225 VT------ESENLLVFNSLLNRSISSPAAVTNKASKSERFPLVRIVIGSRSPEELLRYLQGVTGVDEEMTLLLVAFEEEE  298 (460)
T ss_pred             cc------CchhhHHHHHHhhcccchhhhhhcchhhcccCchhhhhhcCCCHHHHHHHHHhcCCchHHHHHHHhhhhhhh
Confidence            99      99999999998887                5666666652 121 233345677777777777766665554


Q ss_pred             ccccccCc-------------c------CCCC-------CC-------------C-CcCc----C--CCCCCCCCCCCCC
Q 036413          252 RDQLERAT-------------K------TQLP-------PY-------------P-PVHE----Q--MPAYPAVPEEPLQ  285 (346)
Q Consensus       252 ~~~~~~~~-------------~------~~l~-------e~-------------~-~~e~----~--~~~~~~~~~EP~~  285 (346)
                      .....+.+             .      .+++       ++             . .+++    +  ......+|+||.+
T Consensus       299 ~~~q~~~~~~~er~~r~~~~~eQd~eyq~sle~Dr~r~~e~e~~~e~~r~e~er~~~~ee~e~~R~~l~~es~lp~EP~a  378 (460)
T KOG1363|consen  299 RRLQMRRSEQDEREARLALEQEQDDEYQASLEADRVREAEAEQAAEEFRLEKERKEEEEERETARQLLALESSLPPEPSA  378 (460)
T ss_pred             HHHhhcccchhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHhhhccCCCCCCc
Confidence            33221100             0      0110       00             0 0000    0  1245678999966


Q ss_pred             CCCCCeeEEEEEcCCCccc--------------------c-CCcceEEecCCCCCCCCccC-CcccchhhcCCCc--eeE
Q 036413          286 VARNLVCRIGVRLPDGQEA--------------------N-QTRQFRLTRPDPGAPKPLDY-NSKMTFQESGLNN--SVI  341 (346)
Q Consensus       286 ~~~~~~trIqiRlpdG~ri--------------------~-~~~~f~l~~~~P~~~~~l~~-~~d~TieeagL~n--~~v  341 (346)
                       ...++.+|.||+|+|.|.                    . .+..|.+.+.||.  +.+.. ....|+++.||..  .+|
T Consensus       379 -~~~~~~~l~iR~P~G~r~~RrF~~s~~~q~l~~~v~~~~~~~~e~~~~~~fPr--~~~~~~~~~~sl~~~~l~p~qe~l  455 (460)
T KOG1363|consen  379 -SEEEAITVAIRLPSGTRLERRFLKSDKLQILYDYVDSNGFHPEEYSLNTSFPR--RPLGDYEHSSSLQDIGLTPRQETL  455 (460)
T ss_pred             -CcccceeeEEECCCCCeeeeeeecccchhHHHHHHHhccCCchhhccccCCCc--ccccccccccccccCCccccccee
Confidence             567899999999999987                    1 2468999999996  33444 4577999999986  444


Q ss_pred             EEEe
Q 036413          342 LVTL  345 (346)
Q Consensus       342 l~~~  345 (346)
                      .+.|
T Consensus       456 flE~  459 (460)
T KOG1363|consen  456 FLEE  459 (460)
T ss_pred             eeec
Confidence            4444

>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A

Probab=99.51  E-value=3.2e-14  Score=111.13  Aligned_cols=80  Identities=23%  Similarity=0.378  Sum_probs=70.7

Q ss_pred             ccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCC
Q 036413          132 NGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLD  211 (346)
Q Consensus       132 ~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~  211 (346)
                      ..+|++|+..|++++|+|||+++++||..|+.|.|.+|.++.|.++++ +|||++.++++      ..++..-...   .
T Consensus         3 ~~d~~~al~~A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~-~~fv~v~vd~~------~~~~~~~~~~---~   72 (82)
T PF13899_consen    3 QSDYEEALAEAKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALN-KNFVLVKVDVD------DEDPNAQFDR---Q   72 (82)
T ss_dssp             ESSHHHHHHHHHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHH-HCSEEEEEETT------THHHHHHHHH---C
T ss_pred             hhhHHHHHHHHHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHH-CCEEEEEEEcC------CCChhHHhCC---c
Confidence            358999999999999999999999999999999999999999999999 99999999998      6665442221   2


Q ss_pred             CCceEEEEeC
Q 036413          212 SLPVVLVIDP  221 (346)
Q Consensus       212 ~~P~i~iidp  221 (346)
                      -+|+++|+||
T Consensus        73 ~~P~~~~ldp   82 (82)
T PF13899_consen   73 GYPTFFFLDP   82 (82)
T ss_dssp             SSSEEEEEET
T ss_pred             cCCEEEEeCC
Confidence            2999999997

...

>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]

Probab=99.47  E-value=1e-12  Score=128.62  Aligned_cols=110  Identities=22%  Similarity=0.394  Sum_probs=102.4

Q ss_pred             cccccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhc
Q 036413          129 LMFNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYY  208 (346)
Q Consensus       129 l~~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y  208 (346)
                      +-|+|+..+|+..||..++.++|||.+.++ .++.|+|=+|.+..|.+.+. ..||...++..      +..+.+|+..|
T Consensus         2 lwfkGnipeAIa~aK~kkalfVVyI~gddE-~s~kl~r~~w~d~~vs~~ls-~~fVaIkiqag------s~aa~qFs~IY   73 (506)
T KOG2507|consen    2 LWFKGNIPEAIAEAKGKKALFVVYISGDDE-ESDKLNRLTWTDASVSDSLS-KYFVAIKIQAG------SVAATQFSAIY   73 (506)
T ss_pred             cccccchHHHHHHhhcCCeEEEEEEecCch-HhhHHhhccchhhhhhhhhh-cceEEEEeccC------chhhhhhhhhc
Confidence            358999999999999999999999988644 78999999999999999999 99999999999      99999999999


Q ss_pred             CCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHH
Q 036413          209 KLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFM  247 (346)
Q Consensus       209 ~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl  247 (346)
                      ++-..|.+++|+ .+|--+.++.|++++++|.+.|++.+
T Consensus        74 p~v~vPs~ffIg-~sGtpLevitg~v~adeL~~~i~Kv~  111 (506)
T KOG2507|consen   74 PYVSVPSIFFIG-FSGTPLEVITGFVTADELASSIEKVW  111 (506)
T ss_pred             ccccccceeeec-CCCceeEEeeccccHHHHHHHHHHHH
Confidence            999999999999 58999999999999999999887764

>cd01770 p47_UBX p47-like ubiquitin domain

Probab=99.47  E-value=8.3e-14  Score=108.90  Aligned_cols=54  Identities=33%  Similarity=0.469  Sum_probs=47.3

Q ss_pred             CCeeEEEEEcCCCccc---------------------c--CCcceEEecCCCCCCCCccCCcccchhhcCCCceeEEEEe
Q 036413          289 NLVCRIGVRLPDGQEA---------------------N--QTRQFRLTRPDPGAPKPLDYNSKMTFQESGLNNSVILVTL  345 (346)
Q Consensus       289 ~~~trIqiRlpdG~ri---------------------~--~~~~f~l~~~~P~~~~~l~~~~d~TieeagL~n~~vl~~~  345 (346)
                      .++|+||||||||+|+                     .  ..++|+|+++||+  +.+.++ ++||+||||+||+|+++|
T Consensus         2 ~p~t~iqiRlpdG~r~~~rF~~~~tv~~l~~~v~~~~~~~~~~~f~L~t~fP~--k~l~~~-~~Tl~eagL~~s~v~q~~   78 (79)
T cd01770           2 EPTTSIQIRLADGKRLVQKFNSSHRVSDVRDFIVNARPEFAARPFTLMTAFPV--KELSDE-SLTLKEANLLNAVIVQRL   78 (79)
T ss_pred             CCeeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHhCCCCCCCCEEEecCCCC--cccCCC-CCcHHHCCCcCcEEEEEe
Confidence            4689999999999998                     1  2389999999996  667666 999999999999999999

p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif

Probab=99.35  E-value=7.5e-12  Score=105.98  Aligned_cols=90  Identities=16%  Similarity=0.235  Sum_probs=76.5

Q ss_pred             HHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHH-HH----hhcCC
Q 036413          136 EKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRK-VC----GYYKL  210 (346)
Q Consensus       136 ~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~-~~----~~y~~  210 (346)
                      ++|++.|++++|+|||+++++||..|+.|.+.||.+++|.++|+ ++||+..+|+++     .++-.+ +.    ..|++
T Consensus         5 ~eal~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~-~~fv~VkvD~~~-----~~~~~~~~~~~~~~~~~~   78 (124)
T cd02955           5 EEAFEKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILN-ENFVPIKVDREE-----RPDVDKIYMNAAQAMTGQ   78 (124)
T ss_pred             HHHHHHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHh-CCEEEEEEeCCc-----CcHHHHHHHHHHHHhcCC
Confidence            57899999999999999999999999999999999999999999 999999999873     333222 22    24688


Q ss_pred             CCCceEEEEeCCCCceEEEEeC
Q 036413          211 DSLPVVLVIDPITGEKMRKWCG  232 (346)
Q Consensus       211 ~~~P~i~iidp~tge~l~~~~G  232 (346)
                      ..+|++++++| .|+.+....+
T Consensus        79 ~G~Pt~vfl~~-~G~~~~~~~~   99 (124)
T cd02955          79 GGWPLNVFLTP-DLKPFFGGTY   99 (124)
T ss_pred             CCCCEEEEECC-CCCEEeeeee
Confidence            89999999998 5998866543

The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.

>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus

Probab=99.35  E-value=1.7e-12  Score=110.53  Aligned_cols=91  Identities=15%  Similarity=0.248  Sum_probs=75.1

Q ss_pred             cccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCC
Q 036413          131 FNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKL  210 (346)
Q Consensus       131 ~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~  210 (346)
                      ..-+|++|+..||+++|+|||+++++||..|+.|.+.+|++++|+++++ +|||..-.+.+.-+++.++.|         
T Consensus         8 W~~~~eeal~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~-~~Fv~V~l~~d~td~~~~~~g---------   77 (130)
T cd02960           8 WVQTYEEGLYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQ-EDFIMLNLVHETTDKNLSPDG---------   77 (130)
T ss_pred             chhhHHHHHHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHH-hCeEEEEEEeccCCCCcCccC---------
Confidence            3448999999999999999999999999999999999999999999999 999977776652122222222         


Q ss_pred             CCCceEEEEeCCCCceEEEEeC
Q 036413          211 DSLPVVLVIDPITGEKMRKWCG  232 (346)
Q Consensus       211 ~~~P~i~iidp~tge~l~~~~G  232 (346)
                      .-+|+++++|| .|+.+..+.|
T Consensus        78 ~~vPtivFld~-~g~vi~~i~G   98 (130)
T cd02960          78 QYVPRIMFVDP-SLTVRADITG   98 (130)
T ss_pred             cccCeEEEECC-CCCCcccccc
Confidence            24899999998 5888877766

They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.

>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A

Probab=99.34  E-value=1.2e-12  Score=90.63  Aligned_cols=42  Identities=29%  Similarity=0.646  Sum_probs=36.4

Q ss_pred             HHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhhcCCC
Q 036413           11 KRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNNNSNN   53 (346)
Q Consensus        11 ~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~~~~~   53 (346)
                      +++|.+||+| ||+++++|++||++|||||+.||++||+.+++
T Consensus         1 ~e~i~~F~~i-Tg~~~~~A~~~L~~~~wdle~Av~~y~~~~~~   42 (43)
T PF14555_consen    1 DEKIAQFMSI-TGADEDVAIQYLEANNWDLEAAVNAYFDDGEA   42 (43)
T ss_dssp             HHHHHHHHHH-H-SSHHHHHHHHHHTTT-HHHHHHHHHHSS-S
T ss_pred             CHHHHHHHHH-HCcCHHHHHHHHHHcCCCHHHHHHHHHhCCCC
Confidence            5799999999 68899999999999999999999999997653

>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation

Probab=99.29  E-value=2.5e-11  Score=101.63  Aligned_cols=115  Identities=23%  Similarity=0.334  Sum_probs=96.2

Q ss_pred             CHHHHHHHhhhcC-cEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCC-----CCChHHHHHHhh
Q 036413          134 SFEKAKDVGSDEN-KWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDD-----DDDSECRKVCGY  207 (346)
Q Consensus       134 sf~~A~~~Ak~~~-K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~-----~~~~eg~~~~~~  207 (346)
                      ++-++++.|++++ |++||++.++||..|+.|...++.++.+.+.++ ++|+++.++++.+..     ........++..
T Consensus         1 ~~~~~~~~a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~-~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~   79 (125)
T cd02951           1 DLYEDLAEAAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIR-AHFVVVYINIDGDKEVTDFDGEALSEKELARK   79 (125)
T ss_pred             ChHHHHHHHHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHH-hheEEEEEEccCCceeeccCCCCccHHHHHHH
Confidence            3568899999999 999999999999999999999999999999999 899999998872000     000135688999


Q ss_pred             cCCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHHc
Q 036413          208 YKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMES  249 (346)
Q Consensus       208 y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~~  249 (346)
                      |++..+|++.++++..|+.+.++.|..+.+.|.+.|..+++.
T Consensus        80 ~~v~~~Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~~~~  121 (125)
T cd02951          80 YRVRFTPTVIFLDPEGGKEIARLPGYLPPDEFLAYLEYVQEK  121 (125)
T ss_pred             cCCccccEEEEEcCCCCceeEEecCCCCHHHHHHHHHHHHhh
Confidence            999999999999984378888999998888888888877654

Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.

>cd01767 UBX UBX (ubiquitin regulatory X) domain

Probab=99.21  E-value=2.5e-11  Score=94.07  Aligned_cols=54  Identities=33%  Similarity=0.544  Sum_probs=46.5

Q ss_pred             CeeEEEEEcCCCccc---------------------cCCcceEEecCCCCCCCCccC-CcccchhhcCCCceeEEEEe
Q 036413          290 LVCRIGVRLPDGQEA---------------------NQTRQFRLTRPDPGAPKPLDY-NSKMTFQESGLNNSVILVTL  345 (346)
Q Consensus       290 ~~trIqiRlpdG~ri---------------------~~~~~f~l~~~~P~~~~~l~~-~~d~TieeagL~n~~vl~~~  345 (346)
                      ++|+|+||||||+|+                     .....|+|.+.||+  +.+.+ +.++||+++||.|++++|+|
T Consensus         1 p~t~i~iRlpdG~~~~~~F~~~~tl~~l~~fv~~~~~~~~~f~L~t~~Pr--~~~~~~~~~~TL~e~gL~~s~~~~~~   76 (77)
T cd01767           1 PTTKIQIRLPDGKRLEQRFNSTHKLSDVRDFVESNGPPAEPFTLMTSFPR--RVLTDLDYELTLQEAGLVNEVVFQRL   76 (77)
T ss_pred             CcEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHcCCCCCCEEEEeCCCC--ccCCCCCccCcHHHcCCccceEEEEe
Confidence            489999999999998                     12478999999995  55655 58999999999999999999

The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.

>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain

Probab=99.18  E-value=4e-11  Score=95.06  Aligned_cols=56  Identities=25%  Similarity=0.398  Sum_probs=47.1

Q ss_pred             CCeeEEEEEcCCCccc--------------------c-CCcceEEecCCCCCCCCcc------CCcccchhhcCCCceeE
Q 036413          289 NLVCRIGVRLPDGQEA--------------------N-QTRQFRLTRPDPGAPKPLD------YNSKMTFQESGLNNSVI  341 (346)
Q Consensus       289 ~~~trIqiRlpdG~ri--------------------~-~~~~f~l~~~~P~~~~~l~------~~~d~TieeagL~n~~v  341 (346)
                      +++|+||||||||+|+                    . .+..|+|++.||+  +.+.      ++.++||+||||.++.+
T Consensus         2 ~~~~~I~iRlp~G~Rl~rrF~~~~tl~~l~~fv~~~~~~~~~f~L~t~FPr--r~~~~~~~~~~~~~~TL~eaGL~~s~~   79 (85)
T cd01774           2 PDTVKIVFKLPNGTRVERRFLFTQSLRVIHDFLFSLKETPEKFQIVTNFPR--RVLPCLPSEGDPPPPTLLEAGLSNSEV   79 (85)
T ss_pred             CceEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhCCCCCCcEEEecCCCC--ccccccccccCcCCCCHHHcCCCCccE
Confidence            4689999999999998                    1 2578999999995  4443      35688999999999999


Q ss_pred             EEEeC
Q 036413          342 LVTLE  346 (346)
Q Consensus       342 l~~~~  346 (346)
                      |+++|
T Consensus        80 L~V~d   84 (85)
T cd01774          80 LFVQD   84 (85)
T ss_pred             EEEec
Confidence            99986

Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>KOG2086 consensus Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion [Nuclear structure]

Probab=99.16  E-value=4.7e-11  Score=116.46  Aligned_cols=43  Identities=19%  Similarity=0.188  Sum_probs=39.3

Q ss_pred             hHHHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhhcCC
Q 036413            9 QRKRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNNNSN   52 (346)
Q Consensus         9 ~~~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~~~~   52 (346)
                      ...+.|.+|+++ |+.++..|+.||+.++||++.|...++....
T Consensus         3 ~p~~~ls~f~~~-t~~se~~~~~~l~s~~~d~~~a~~~~~~~~~   45 (380)
T KOG2086|consen    3 IPLDSLSEFRAV-TGPSESRARFYLESIYWDREAAHRSELEAFA   45 (380)
T ss_pred             CchhHHHHHhcc-CCCCccccccccccCCCchhhhhhhhccccc
Confidence            356789999999 9999999999999999999999999998654

>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD

Probab=99.11  E-value=2.8e-10  Score=92.12  Aligned_cols=102  Identities=15%  Similarity=0.182  Sum_probs=87.5

Q ss_pred             HHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCCCCceE
Q 036413          137 KAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVV  216 (346)
Q Consensus       137 ~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~i  216 (346)
                      +++..|.+++|++||++.++||..|+.|.+-++.++.+.+.++ +++++..++++.    .......+++.|++..+|++
T Consensus         2 ~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~-~~~~~~~vd~~~----~~~~~~~~~~~~~i~~~Pti   76 (104)
T cd02953           2 AALAQALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALK-KDVVLLRADWTK----NDPEITALLKRFGVFGPPTY   76 (104)
T ss_pred             HHHHHHHHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHh-CCeEEEEEecCC----CCHHHHHHHHHcCCCCCCEE
Confidence            5667788999999999999999999999988888999999999 899999998872    02335789999999999999


Q ss_pred             EEEeCCCCceEEEEeCCCChHHHHHHH
Q 036413          217 LVIDPITGEKMRKWCGMVDPVSLLEDL  243 (346)
Q Consensus       217 ~iidp~tge~l~~~~G~~~~~~~i~~L  243 (346)
                      .|+++-.|+.+....|..+.++|.+.|
T Consensus        77 ~~~~~~~g~~~~~~~G~~~~~~l~~~l  103 (104)
T cd02953          77 LFYGPGGEPEPLRLPGFLTADEFLEAL  103 (104)
T ss_pred             EEECCCCCCCCcccccccCHHHHHHHh
Confidence            999973588888889999988877665

It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.

>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain

Probab=99.01  E-value=8.3e-10  Score=86.72  Aligned_cols=56  Identities=25%  Similarity=0.417  Sum_probs=45.7

Q ss_pred             CCCeeEEEEEcCCCccc--------------------c-CCcceEEecCCCCCCCCcc-CCcccchhhcCCCceeEEEEe
Q 036413          288 RNLVCRIGVRLPDGQEA--------------------N-QTRQFRLTRPDPGAPKPLD-YNSKMTFQESGLNNSVILVTL  345 (346)
Q Consensus       288 ~~~~trIqiRlpdG~ri--------------------~-~~~~f~l~~~~P~~~~~l~-~~~d~TieeagL~n~~vl~~~  345 (346)
                      .+++|+|+||||||+|+                    . .+..|+|++.||.  +.+. .+.+.||++|||.++.+|++=
T Consensus         2 ~~~~t~i~vRlP~G~r~~rrF~~~~~L~~v~~fv~~~g~~~~~f~L~t~FPR--r~~~~~d~~~TL~e~GL~P~~~LfVq   79 (82)
T cd01773           2 NGPKARLMLRYPDGKREQIALPEQAKLLALVRHVQSKGYPNERFELLTNFPR--RKLSHLDYDITLQEAGLCPQETVFVQ   79 (82)
T ss_pred             CCCeeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcCCCCCCEEEecCCCC--cccCCcccCCCHHHcCCCCCcEEEEe
Confidence            45799999999999998                    1 2478999999996  4443 355689999999999988863

Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>smart00166 UBX Domain present in ubiquitin-regulatory proteins

Probab=98.99  E-value=9.2e-10  Score=85.95  Aligned_cols=55  Identities=27%  Similarity=0.477  Sum_probs=42.3

Q ss_pred             CCeeEEEEEcCCCccc---------------------c-CCcceEEecCCCCCCCCccC-CcccchhhcCCC-ceeEEEE
Q 036413          289 NLVCRIGVRLPDGQEA---------------------N-QTRQFRLTRPDPGAPKPLDY-NSKMTFQESGLN-NSVILVT  344 (346)
Q Consensus       289 ~~~trIqiRlpdG~ri---------------------~-~~~~f~l~~~~P~~~~~l~~-~~d~TieeagL~-n~~vl~~  344 (346)
                      .+.|+||||||||+|+                     . ..++|+|.+.||+  +.+.+ +.++||+++||. +++|+|+
T Consensus         2 ~~~~~I~iRlPdG~ri~~~F~~~~tl~~v~~~v~~~~~~~~~~f~L~t~~Pr--k~l~~~d~~~tL~e~gL~p~~~l~v~   79 (80)
T smart00166        2 SDQCRLQIRLPDGSRLVRRFPSSDTLRTVYEFVSAALTDGNDPFTLNSPFPR--RTFTKDDYSKTLLELALLPSSTLVLE   79 (80)
T ss_pred             CCeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHcccCCCCCEEEEeCCCC--cCCccccccCCHHHCCCCCceEEEEe
Confidence            3689999999999998                     1 2468999999995  44433 347899999997 5666665


Q ss_pred             e
Q 036413          345 L  345 (346)
Q Consensus       345 ~  345 (346)
                      |
T Consensus        80 ~   80 (80)
T smart00166       80 P   80 (80)
T ss_pred             C
Confidence            5

Present in FAF1 and Shp1p.

>cd01771 Faf1_UBX Faf1 UBX domain

Probab=98.96  E-value=1.3e-09  Score=85.37  Aligned_cols=54  Identities=20%  Similarity=0.337  Sum_probs=44.5

Q ss_pred             CCeeEEEEEcCCCccc---------------------cCCcceEEecCCCCCCCCcc-CCcccchhhcCCCceeEEEE
Q 036413          289 NLVCRIGVRLPDGQEA---------------------NQTRQFRLTRPDPGAPKPLD-YNSKMTFQESGLNNSVILVT  344 (346)
Q Consensus       289 ~~~trIqiRlpdG~ri---------------------~~~~~f~l~~~~P~~~~~l~-~~~d~TieeagL~n~~vl~~  344 (346)
                      .++|+||||||||+|+                     ...+.|+|++.||.  +.+. .+.+.||+++||.++.+|++
T Consensus         2 ~~~~~i~iRlP~G~r~~rrF~~t~~L~~l~~fv~~~~~~~~~f~L~t~fPR--k~~~~~d~~~TL~e~gL~p~~~L~V   77 (80)
T cd01771           2 EPISKLRVRTPSGDFLERRFLGDTPLQVLLNFVASKGYPIDEYKLLSSWPR--RDLTQLDPNFTLLELKLYPQETLIL   77 (80)
T ss_pred             CCeEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcCCCCCCEEEecCCCC--CCCcCCCCCCcHHHcCCCCCcEEEE
Confidence            5799999999999998                     12478999999995  5553 46788999999998877765

Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins

Probab=98.94  E-value=2.9e-09  Score=93.99  Aligned_cols=88  Identities=19%  Similarity=0.302  Sum_probs=63.7

Q ss_pred             HHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHH-HHh----hcC
Q 036413          135 FEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRK-VCG----YYK  209 (346)
Q Consensus       135 f~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~-~~~----~y~  209 (346)
                      .++|++.||+++|+|||.|...+|-.|++|.++++.|++|.++|| +|||-..+|.++     .++-.. |.+    ..+
T Consensus        26 ~~ea~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN-~~FI~VkvDree-----~Pdid~~y~~~~~~~~~   99 (163)
T PF03190_consen   26 GEEALEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLN-RNFIPVKVDREE-----RPDIDKIYMNAVQAMSG   99 (163)
T ss_dssp             SHHHHHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHH-HH-EEEEEETTT------HHHHHHHHHHHHHHHS
T ss_pred             CHHHHHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHh-CCEEEEEecccc-----CccHHHHHHHHHHHhcC
Confidence            369999999999999999999999999999999999999999999 999999998884     455222 211    125


Q ss_pred             CCCCceEEEEeCCCCceEEE
Q 036413          210 LDSLPVVLVIDPITGEKMRK  229 (346)
Q Consensus       210 ~~~~P~i~iidp~tge~l~~  229 (346)
                      ...+|..++++| .|+.+..
T Consensus       100 ~gGwPl~vfltP-dg~p~~~  118 (163)
T PF03190_consen  100 SGGWPLTVFLTP-DGKPFFG  118 (163)
T ss_dssp             ---SSEEEEE-T-TS-EEEE
T ss_pred             CCCCCceEEECC-CCCeeee
Confidence            678999999999 6877654

; PDB: 3IRA_A.

>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A

Probab=98.90  E-value=9.8e-10  Score=89.60  Aligned_cols=94  Identities=21%  Similarity=0.374  Sum_probs=78.4

Q ss_pred             hhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChH------------------HHH
Q 036413          142 GSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSE------------------CRK  203 (346)
Q Consensus       142 Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~e------------------g~~  203 (346)
                      ||.++|.++|++.+++|..|+.|...+..+..+...++ .+|.+..++.+      +..                  ...
T Consensus         1 ~~~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~   73 (112)
T PF13098_consen    1 AKGNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLK-DDFQVIFVNID------DSRDESEAVLDFDGQKNVRLSNKE   73 (112)
T ss_dssp             EETTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEH-CECEEEECESH------SHHHHHHHHHSHTCHSSCHHHHHH
T ss_pred             CCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhh-cCeEEEEEecC------CcccccccccccccchhhhHHHHH
Confidence            78899999999999999999999999999999999999 89999999888      332                  346


Q ss_pred             HHhhcCCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHH
Q 036413          204 VCGYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDL  243 (346)
Q Consensus       204 ~~~~y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L  243 (346)
                      ++..|++..+|++.++|+ .|+.+.+..|.+++++|...|
T Consensus        74 l~~~~~v~gtPt~~~~d~-~G~~v~~~~G~~~~~~l~~~L  112 (112)
T PF13098_consen   74 LAQRYGVNGTPTIVFLDK-DGKIVYRIPGYLSPEELLKML  112 (112)
T ss_dssp             HHHHTT--SSSEEEECTT-TSCEEEEEESS--HHHHHHHH
T ss_pred             HHHHcCCCccCEEEEEcC-CCCEEEEecCCCCHHHHHhhC
Confidence            889999999999999995 699998899999999998775

...

>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast

Probab=98.90  E-value=2.8e-09  Score=83.27  Aligned_cols=56  Identities=32%  Similarity=0.482  Sum_probs=42.3

Q ss_pred             CCCeeEEEEEcCCCccc---------------------cC-Cc-ceEEecCCCCCCCCccCCcccchhhcCCC-ceeEEE
Q 036413          288 RNLVCRIGVRLPDGQEA---------------------NQ-TR-QFRLTRPDPGAPKPLDYNSKMTFQESGLN-NSVILV  343 (346)
Q Consensus       288 ~~~~trIqiRlpdG~ri---------------------~~-~~-~f~l~~~~P~~~~~l~~~~d~TieeagL~-n~~vl~  343 (346)
                      ..+.|+|+||||||+++                     .. .. .|+|+++||+  +.+..+.++||+++||. +++|+|
T Consensus         3 ~~~~~~I~vRlpdG~~l~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~~~Pr--~~l~~~~~~tl~e~~l~p~~~l~v   80 (82)
T PF00789_consen    3 ESDVVRIQVRLPDGSRLQRRFPKSDTLQDLYDFVESQLFSPEESDFELITAFPR--RELTDEDSKTLEEAGLLPSATLIV   80 (82)
T ss_dssp             TSSEEEEEEEETTSTEEEEEEETTSBHHHHHHHHHHHHHCTTTSSEEEEESSST--EECCSTTTSBTCCCTTSSCEEEEE
T ss_pred             CCCEEEEEEECCCCCEEEEEECCcchHHHHHHHHHHhcCCCCCccEEEEeCCCC--cCCCccccccHHHhcCCCCeEEEE
Confidence            46799999999999998                     12 23 3999999995  44544446999999888 677777


Q ss_pred             Ee
Q 036413          344 TL  345 (346)
Q Consensus       344 ~~  345 (346)
                      +|
T Consensus        81 ~~   82 (82)
T PF00789_consen   81 EK   82 (82)
T ss_dssp             E-
T ss_pred             EC
Confidence            77

The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....

>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional

Probab=98.84  E-value=1.2e-08  Score=106.78  Aligned_cols=107  Identities=17%  Similarity=0.314  Sum_probs=93.6

Q ss_pred             cCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCCC
Q 036413          133 GSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDS  212 (346)
Q Consensus       133 gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~  212 (346)
                      .+|+++++.|+.++|.++|++..+||..|+.+.+.++.++.|++.++  +|++..+|+++    .+++...+++.|++..
T Consensus       461 ~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~--~~~~v~vDvt~----~~~~~~~l~~~~~v~g  534 (571)
T PRK00293        461 AELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA--DTVLLQADVTA----NNAEDVALLKHYNVLG  534 (571)
T ss_pred             HHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc--CCEEEEEECCC----CChhhHHHHHHcCCCC
Confidence            46789999999999999999999999999999999999999999998  59999999882    1345678999999999


Q ss_pred             CceEEEEeCCCCceE--EEEeCCCChHHHHHHHHHH
Q 036413          213 LPVVLVIDPITGEKM--RKWCGMVDPVSLLEDLLSF  246 (346)
Q Consensus       213 ~P~i~iidp~tge~l--~~~~G~~~~~~~i~~L~~f  246 (346)
                      +|++.++++ .|+.+  .++.|..++++|++.|.+.
T Consensus       535 ~Pt~~~~~~-~G~~i~~~r~~G~~~~~~f~~~L~~~  569 (571)
T PRK00293        535 LPTILFFDA-QGQEIPDARVTGFMDAAAFAAHLRQL  569 (571)
T ss_pred             CCEEEEECC-CCCCcccccccCCCCHHHHHHHHHHh
Confidence            999999997 58774  5678999999998888763

>cd01772 SAKS1_UBX SAKS1-like UBX domain

Probab=98.81  E-value=7.3e-09  Score=80.89  Aligned_cols=53  Identities=32%  Similarity=0.438  Sum_probs=43.4

Q ss_pred             CeeEEEEEcCCCccc---------------------cCCcceEEecCCCCCCCCcc-CCcccchhhcCCCceeEEEE
Q 036413          290 LVCRIGVRLPDGQEA---------------------NQTRQFRLTRPDPGAPKPLD-YNSKMTFQESGLNNSVILVT  344 (346)
Q Consensus       290 ~~trIqiRlpdG~ri---------------------~~~~~f~l~~~~P~~~~~l~-~~~d~TieeagL~n~~vl~~  344 (346)
                      ..|+|+||||||+|+                     .++..|+|++.||+  |.+. ++.++||+|+||.++.+|++
T Consensus         3 ~~~~i~iRlp~G~~~~~~F~~~~tl~~v~~fV~~~~~~~~~f~L~t~fPr--k~~~~~d~~~TL~elgL~Psa~L~v   77 (79)
T cd01772           3 TETRIQIRLLDGTTLKQTFKAREQLAAVRLFVELNTGNGGPFTLMTPFPR--KVFTEDDMEKPLQELGLVPSAVLIV   77 (79)
T ss_pred             cEEEEEEECCCCCEEEEEeCCCChHHHHHHHHHHcCCCCCCEEEEeCCCC--eECCcccccCCHHHCCCCCceEEEE
Confidence            579999999999998                     12478999999995  4443 35688999999998888875

SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain

Probab=98.77  E-value=7.2e-09  Score=86.65  Aligned_cols=103  Identities=17%  Similarity=0.266  Sum_probs=77.7

Q ss_pred             CHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCCC-
Q 036413          134 SFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDS-  212 (346)
Q Consensus       134 sf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~-  212 (346)
                      +|++|++.|++++|++||+++.+||..|+.|.+.+...+.+.. ++ .+||..-++.+.     .+    ....|++.. 
T Consensus         7 ~~~~al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~-~~-~~fv~v~vd~~~-----~~----~~~~~~~~g~   75 (117)
T cd02959           7 TLEDGIKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISE-LS-HNFVMVNLEDDE-----EP----KDEEFSPDGG   75 (117)
T ss_pred             eHHHHHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHh-hc-CcEEEEEecCCC-----Cc----hhhhcccCCC
Confidence            7999999999999999999999999999999998777777665 57 799887655441     12    233566654 


Q ss_pred             -CceEEEEeCCCCceEEEE---eCCCChHHHHHHHHHHHH
Q 036413          213 -LPVVLVIDPITGEKMRKW---CGMVDPVSLLEDLLSFME  248 (346)
Q Consensus       213 -~P~i~iidp~tge~l~~~---~G~~~~~~~i~~L~~fl~  248 (346)
                       +|++++++| .|+.+.++   .|..+...|.+.|.....
T Consensus        76 ~vPt~~f~~~-~Gk~~~~~~~~~~~~~~~~f~~~~~~~~~  114 (117)
T cd02959          76 YIPRILFLDP-SGDVHPEIINKKGNPNYKYFYSSAAQVTE  114 (117)
T ss_pred             ccceEEEECC-CCCCchhhccCCCCccccccCCCHHHHHh
Confidence             999999998 59887753   455555666665555443

Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.

>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.67  E-value=1.6e-07  Score=81.82  Aligned_cols=110  Identities=15%  Similarity=0.218  Sum_probs=94.1

Q ss_pred             ccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCC---------CCChHHH
Q 036413          132 NGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDD---------DDDSECR  202 (346)
Q Consensus       132 ~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~---------~~~~eg~  202 (346)
                      +-+.-++...|.-.+|++|+-+-++.|.-|..|.||+...+.+++++. +||.++-.+... ++         ..+..-.
T Consensus        28 ~~~~~~d~ksi~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk-~hf~~~~l~i~~-skpv~f~~g~kee~~s~~  105 (182)
T COG2143          28 NIDVFDDNKSISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLK-EHFSAYYLNISY-SKPVLFKVGDKEEKMSTE  105 (182)
T ss_pred             hhhhHHHHHhcCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHh-hCeEEEEEEecc-CcceEeecCceeeeecHH
Confidence            344567888899999999999999999999999999999999999999 999999998772 11         0122234


Q ss_pred             HHHhhcCCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHH
Q 036413          203 KVCGYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLL  244 (346)
Q Consensus       203 ~~~~~y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~  244 (346)
                      .+++.|++.++|++.+.| .+|+.+-.+.|.++|+.|+.-|.
T Consensus       106 ELa~kf~vrstPtfvFfd-k~Gk~Il~lPGY~ppe~Fl~vlk  146 (182)
T COG2143         106 ELAQKFAVRSTPTFVFFD-KTGKTILELPGYMPPEQFLAVLK  146 (182)
T ss_pred             HHHHHhccccCceEEEEc-CCCCEEEecCCCCCHHHHHHHHH
Confidence            788999999999999999 58999999999999999997664

>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus

Probab=98.61  E-value=3.7e-07  Score=78.77  Aligned_cols=101  Identities=17%  Similarity=0.230  Sum_probs=78.7

Q ss_pred             HHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCCCCceEEEE
Q 036413          140 DVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVLVI  219 (346)
Q Consensus       140 ~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~i~ii  219 (346)
                      +.|...+|.++|++.++||..|+.|...+-   .+.+-.+ ..+-|..++++      ..+...++..|++..+|++.|+
T Consensus        14 ~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~---~l~~~~~-~~~~~v~v~vd------~~~~~~~~~~~~V~~iPt~v~~   83 (142)
T cd02950          14 EVALSNGKPTLVEFYADWCTVCQEMAPDVA---KLKQKYG-DQVNFVMLNVD------NPKWLPEIDRYRVDGIPHFVFL   83 (142)
T ss_pred             HHHHhCCCEEEEEEECCcCHHHHHhHHHHH---HHHHHhc-cCeeEEEEEcC------CcccHHHHHHcCCCCCCEEEEE
Confidence            445578999999999999999999854321   2333334 45666777777      5555678899999999999999


Q ss_pred             eCCCCceEEEEeCCCChHHHHHHHHHHHHcCC
Q 036413          220 DPITGEKMRKWCGMVDPVSLLEDLLSFMESGP  251 (346)
Q Consensus       220 dp~tge~l~~~~G~~~~~~~i~~L~~fl~~~~  251 (346)
                      ++ .|+.+..+.|..+.++|.+.|...+...+
T Consensus        84 ~~-~G~~v~~~~G~~~~~~l~~~l~~l~~~~~  114 (142)
T cd02950          84 DR-EGNEEGQSIGLQPKQVLAQNLDALVAGEP  114 (142)
T ss_pred             CC-CCCEEEEEeCCCCHHHHHHHHHHHHcCCC
Confidence            96 69999999999888888888888887664

It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.

>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif

Probab=98.43  E-value=2.8e-06  Score=68.97  Aligned_cols=96  Identities=19%  Similarity=0.340  Sum_probs=72.9

Q ss_pred             CHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhcc-CcEEEEEeecCCCCCCCChHHHHHHhhcCCCC
Q 036413          134 SFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRA-SNFIFWQVYDDDDDDDDDSECRKVCGYYKLDS  212 (346)
Q Consensus       134 sf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~-~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~  212 (346)
                      .|++++..+  .+|++||++.++||..|+.+.      +.+.++-++ .++.|..++.++     ..+...+++.|++..
T Consensus         5 ~~~~~i~~~--~~k~vvv~F~a~wC~~C~~~~------p~l~~la~~~~~v~~~~vd~d~-----~~~~~~l~~~~~V~~   71 (103)
T cd02985           5 ELDEALKKA--KGRLVVLEFALKHSGPSVKIY------PTMVKLSRTCNDVVFLLVNGDE-----NDSTMELCRREKIIE   71 (103)
T ss_pred             HHHHHHHHc--CCCEEEEEEECCCCHhHHHHh------HHHHHHHHHCCCCEEEEEECCC-----ChHHHHHHHHcCCCc
Confidence            466666544  499999999999999999884      556555441 257888888873     445568999999999


Q ss_pred             CceEEEEeCCCCceEEEEeCCCChHHHHHHHHH
Q 036413          213 LPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLS  245 (346)
Q Consensus       213 ~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~  245 (346)
                      +|++.++  +.|+.+..+.| ..+.++.+.+..
T Consensus        72 ~Pt~~~~--~~G~~v~~~~G-~~~~~l~~~~~~  101 (103)
T cd02985          72 VPHFLFY--KDGEKIHEEEG-IGPDELIGDVLY  101 (103)
T ss_pred             CCEEEEE--eCCeEEEEEeC-CCHHHHHHHHHh
Confidence            9998777  36999999999 456777766543

CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.

>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain

Probab=98.33  E-value=4.8e-06  Score=65.89  Aligned_cols=94  Identities=17%  Similarity=0.282  Sum_probs=71.8

Q ss_pred             CHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCCCC
Q 036413          134 SFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSL  213 (346)
Q Consensus       134 sf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~  213 (346)
                      +|++.+..  ..+|.+||+++++||..|+.+...+   ..+.+.+. ..+.|..++.+      .  ...+++.|++..+
T Consensus         2 ~f~~~i~~--~~~~~vlv~f~a~wC~~C~~~~~~~---~~~~~~~~-~~~~~~~vd~~------~--~~~l~~~~~i~~~   67 (96)
T cd02956           2 NFQQVLQE--STQVPVVVDFWAPRSPPSKELLPLL---ERLAEEYQ-GQFVLAKVNCD------A--QPQIAQQFGVQAL   67 (96)
T ss_pred             ChHHHHHh--cCCCeEEEEEECCCChHHHHHHHHH---HHHHHHhC-CcEEEEEEecc------C--CHHHHHHcCCCCC
Confidence            45555543  3589999999999999999996532   34444556 67888888877      3  3568899999999


Q ss_pred             ceEEEEeCCCCceEEEEeCCCChHHHHHHH
Q 036413          214 PVVLVIDPITGEKMRKWCGMVDPVSLLEDL  243 (346)
Q Consensus       214 P~i~iidp~tge~l~~~~G~~~~~~~i~~L  243 (346)
                      |++.|++  .|+.+....|..+.+++...|
T Consensus        68 Pt~~~~~--~g~~~~~~~g~~~~~~l~~~l   95 (96)
T cd02956          68 PTVYLFA--AGQPVDGFQGAQPEEQLRQML   95 (96)
T ss_pred             CEEEEEe--CCEEeeeecCCCCHHHHHHHh
Confidence            9999997  588888889988877665543

Its gene has been sequenced from several gammaproteobacteria and actinobacteria.

>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.28  E-value=8e-06  Score=71.00  Aligned_cols=107  Identities=22%  Similarity=0.302  Sum_probs=85.3

Q ss_pred             ccccccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhh
Q 036413          128 DLMFNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGY  207 (346)
Q Consensus       128 ~l~~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~  207 (346)
                      .++-.-+..+--..=.+..+++||++|.+||.+|+.|-.-+  ++.+.+| . +.|-|+-++.++        --.++..
T Consensus        43 ~~~~~~s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l--~~~~~~~-~-g~~k~~kvdtD~--------~~ela~~  110 (150)
T KOG0910|consen   43 TLFNVQSDSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPIL--EELVSEY-A-GKFKLYKVDTDE--------HPELAED  110 (150)
T ss_pred             ccccccCHHHHHHHHHccCCCEEEEEecCcCccHhHhhHHH--HHHHHhh-c-CeEEEEEEcccc--------ccchHhh
Confidence            33445567777778889999999999999999999994322  3344444 3 689999998882        2568999


Q ss_pred             cCCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHH
Q 036413          208 YKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFME  248 (346)
Q Consensus       208 y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~  248 (346)
                      |.+...|+++++.  +||++..+.|..+.+.+.+.+.+|+.
T Consensus       111 Y~I~avPtvlvfk--nGe~~d~~vG~~~~~~l~~~i~k~l~  149 (150)
T KOG0910|consen  111 YEISAVPTVLVFK--NGEKVDRFVGAVPKEQLRSLIKKFLK  149 (150)
T ss_pred             cceeeeeEEEEEE--CCEEeeeecccCCHHHHHHHHHHHhc
Confidence            9999999999999  59999999999998888888887764

>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

Probab=98.25  E-value=3.2e-06  Score=87.25  Aligned_cols=102  Identities=18%  Similarity=0.228  Sum_probs=86.0

Q ss_pred             HHHHhhhcC--cEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCCCCce
Q 036413          138 AKDVGSDEN--KWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPV  215 (346)
Q Consensus       138 A~~~Ak~~~--K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~  215 (346)
                      .++.+..++  |++|||++.+||-.|+.+.|-|++++.|..-+.  ++|+.+.|++    +.+++-..+.+.|++-..|.
T Consensus       464 ~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~--~~vlLqaDvT----~~~p~~~~lLk~~~~~G~P~  537 (569)
T COG4232         464 ELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQ--DVVLLQADVT----ANDPAITALLKRLGVFGVPT  537 (569)
T ss_pred             HHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcC--CeEEEEeeec----CCCHHHHHHHHHcCCCCCCE
Confidence            444444444  599999999999999999999999999988887  9999999999    34677778889999999999


Q ss_pred             EEEEeCCCCceEEEEeCCCChHHHHHHHHHH
Q 036413          216 VLVIDPITGEKMRKWCGMVDPVSLLEDLLSF  246 (346)
Q Consensus       216 i~iidp~tge~l~~~~G~~~~~~~i~~L~~f  246 (346)
                      +.+.++. |+....+.|+++.+.|++.|+++
T Consensus       538 ~~ff~~~-g~e~~~l~gf~~a~~~~~~l~~~  567 (569)
T COG4232         538 YLFFGPQ-GSEPEILTGFLTADAFLEHLERA  567 (569)
T ss_pred             EEEECCC-CCcCcCCcceecHHHHHHHHHHh
Confidence            9999985 54444488999999999999875

>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains

Probab=98.19  E-value=2e-05  Score=62.98  Aligned_cols=96  Identities=18%  Similarity=0.181  Sum_probs=75.0

Q ss_pred             cCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCCC
Q 036413          133 GSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDS  212 (346)
Q Consensus       133 gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~  212 (346)
                      |+|.-....++ .+|.++|++.++||..|+.+.+-+   +.+.+-++ .++.+..++.+      ..  ..++..|++..
T Consensus         1 ~~~~~~~~~~~-~~~~vlv~f~a~~C~~C~~~~~~l---~~l~~~~~-~~v~~~~id~d------~~--~~l~~~~~v~~   67 (97)
T cd02949           1 GSYALRKLYHE-SDRLILVLYTSPTCGPCRTLKPIL---NKVIDEFD-GAVHFVEIDID------ED--QEIAEAAGIMG   67 (97)
T ss_pred             CchhHHHHHHh-CCCeEEEEEECCCChhHHHHHHHH---HHHHHHhC-CceEEEEEECC------CC--HHHHHHCCCee
Confidence            56666666666 889999999999999999996543   44555566 67888888877      22  35788999999


Q ss_pred             CceEEEEeCCCCceEEEEeCCCChHHHHHHH
Q 036413          213 LPVVLVIDPITGEKMRKWCGMVDPVSLLEDL  243 (346)
Q Consensus       213 ~P~i~iidp~tge~l~~~~G~~~~~~~i~~L  243 (346)
                      +|++.|+.  .|+.+....|..+.++|.+.|
T Consensus        68 vPt~~i~~--~g~~v~~~~g~~~~~~~~~~l   96 (97)
T cd02949          68 TPTVQFFK--DKELVKEISGVKMKSEYREFI   96 (97)
T ss_pred             ccEEEEEE--CCeEEEEEeCCccHHHHHHhh
Confidence            99999996  589999999988877766554

The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.

>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms

Probab=98.11  E-value=3e-05  Score=61.25  Aligned_cols=97  Identities=21%  Similarity=0.368  Sum_probs=74.6

Q ss_pred             ccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCC
Q 036413          132 NGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLD  211 (346)
Q Consensus       132 ~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~  211 (346)
                      .-+|++++..   .++.++|++.++||..|+.+...+   ..+.+-.. .++.|+.++.+      .  ...+++.|++.
T Consensus         6 ~~~f~~~i~~---~~~~vvv~f~~~~C~~C~~~~~~~---~~~~~~~~-~~v~~~~vd~~------~--~~~l~~~~~v~   70 (103)
T PF00085_consen    6 DENFEKFINE---SDKPVVVYFYAPWCPPCKAFKPIL---EKLAKEYK-DNVKFAKVDCD------E--NKELCKKYGVK   70 (103)
T ss_dssp             TTTHHHHHTT---TSSEEEEEEESTTSHHHHHHHHHH---HHHHHHTT-TTSEEEEEETT------T--SHHHHHHTTCS
T ss_pred             HHHHHHHHHc---cCCCEEEEEeCCCCCcccccccee---cccccccc-cccccchhhhh------c--cchhhhccCCC
Confidence            3456666655   579999999999999999994222   23334444 58999998877      2  37799999999


Q ss_pred             CCceEEEEeCCCCceEEEEeCCCChHHHHHHHHH
Q 036413          212 SLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLS  245 (346)
Q Consensus       212 ~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~  245 (346)
                      .+|++.++.  .|+.+....|..+.+.+.+.|.+
T Consensus        71 ~~Pt~~~~~--~g~~~~~~~g~~~~~~l~~~i~~  102 (103)
T PF00085_consen   71 SVPTIIFFK--NGKEVKRYNGPRNAESLIEFIEK  102 (103)
T ss_dssp             SSSEEEEEE--TTEEEEEEESSSSHHHHHHHHHH
T ss_pred             CCCEEEEEE--CCcEEEEEECCCCHHHHHHHHHc
Confidence            999999998  48888899998898877776653

Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....

>PRK10996 thioredoxin 2; Provisional

Probab=98.09  E-value=3e-05  Score=66.52  Aligned_cols=91  Identities=13%  Similarity=0.227  Sum_probs=70.8

Q ss_pred             hhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCCCCceEEEEeC
Q 036413          142 GSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVLVIDP  221 (346)
Q Consensus       142 Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~i~iidp  221 (346)
                      +.+++|.++|+++.+||..|+.+.. ++  ..+.+-.+ .++.|..++.+      ..  ..++..|++..+|++.++. 
T Consensus        48 ~i~~~k~vvv~F~a~wC~~C~~~~~-~l--~~l~~~~~-~~v~~~~vd~~------~~--~~l~~~~~V~~~Ptlii~~-  114 (139)
T PRK10996         48 LLQDDLPVVIDFWAPWCGPCRNFAP-IF--EDVAAERS-GKVRFVKVNTE------AE--RELSARFRIRSIPTIMIFK-  114 (139)
T ss_pred             HHhCCCeEEEEEECCCCHHHHHHHH-HH--HHHHHHhC-CCeEEEEEeCC------CC--HHHHHhcCCCccCEEEEEE-
Confidence            3456899999999999999999854 33  33444456 68888888777      32  4688999999999998886 


Q ss_pred             CCCceEEEEeCCCChHHHHHHHHHH
Q 036413          222 ITGEKMRKWCGMVDPVSLLEDLLSF  246 (346)
Q Consensus       222 ~tge~l~~~~G~~~~~~~i~~L~~f  246 (346)
                       .|+.+..+.|..+.+.|.+.|.+.
T Consensus       115 -~G~~v~~~~G~~~~e~l~~~l~~~  138 (139)
T PRK10996        115 -NGQVVDMLNGAVPKAPFDSWLNEA  138 (139)
T ss_pred             -CCEEEEEEcCCCCHHHHHHHHHHh
Confidence             699999999988877776666543

>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

Probab=98.06  E-value=2.5e-05  Score=62.13  Aligned_cols=94  Identities=15%  Similarity=0.218  Sum_probs=69.1

Q ss_pred             cCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhc-cCcEEEEEeecCCCCCCCChHHHHHHhhcCCC
Q 036413          133 GSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIR-ASNFIFWQVYDDDDDDDDDSECRKVCGYYKLD  211 (346)
Q Consensus       133 gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~-~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~  211 (346)
                      .+|++++    ++++.++|++.++||..|+.+...+   ..+.+.+. ...++|..++.+      ..+...++..|++.
T Consensus         8 ~~~~~~~----~~~~~~~v~f~a~wC~~C~~~~~~~---~~~~~~~~~~~~~~~~~id~~------~~~~~~~~~~~~i~   74 (104)
T cd02997           8 EDFRKFL----KKEKHVLVMFYAPWCGHCKKMKPEF---TKAATELKEDGKGVLAAVDCT------KPEHDALKEEYNVK   74 (104)
T ss_pred             HhHHHHH----hhCCCEEEEEECCCCHHHHHhCHHH---HHHHHHHhhCCceEEEEEECC------CCccHHHHHhCCCc
Confidence            3455544    4567999999999999999996554   23333333 145788888887      54567789999999


Q ss_pred             CCceEEEEeCCCCceEEEEeCCCChHHHHH
Q 036413          212 SLPVVLVIDPITGEKMRKWCGMVDPVSLLE  241 (346)
Q Consensus       212 ~~P~i~iidp~tge~l~~~~G~~~~~~~i~  241 (346)
                      .+|++.+..  .|+.+..+.|..+.+.+++
T Consensus        75 ~~Pt~~~~~--~g~~~~~~~g~~~~~~l~~  102 (104)
T cd02997          75 GFPTFKYFE--NGKFVEKYEGERTAEDIIE  102 (104)
T ss_pred             cccEEEEEe--CCCeeEEeCCCCCHHHHHh
Confidence            999987665  5888888899888776654

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.

>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain

Probab=98.04  E-value=3.5e-05  Score=63.40  Aligned_cols=100  Identities=13%  Similarity=0.083  Sum_probs=70.5

Q ss_pred             cccCHHHHHHHh--hhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhc
Q 036413          131 FNGSFEKAKDVG--SDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYY  208 (346)
Q Consensus       131 ~~gsf~~A~~~A--k~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y  208 (346)
                      |.-+.++..+.+  +..+|.+||+++++||..|+.+.+.+.   .+.+-++..++.|..++.+      ..  ..++..|
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~---~l~~~~~~~~v~~~~vd~d------~~--~~l~~~~   75 (111)
T cd02963           7 YSLTFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWK---EVIQELEPLGVGIATVNAG------HE--RRLARKL   75 (111)
T ss_pred             heeeHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHH---HHHHHHHhcCceEEEEecc------cc--HHHHHHc
Confidence            344445554444  347899999999999999999965422   3333333136888888776      32  4678999


Q ss_pred             CCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHH
Q 036413          209 KLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDL  243 (346)
Q Consensus       209 ~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L  243 (346)
                      ++.++|++.++.  .|+.+....|..+.+.+.+.|
T Consensus        76 ~V~~~Pt~~i~~--~g~~~~~~~G~~~~~~l~~~i  108 (111)
T cd02963          76 GAHSVPAIVGII--NGQVTFYHDSSFTKQHVVDFV  108 (111)
T ss_pred             CCccCCEEEEEE--CCEEEEEecCCCCHHHHHHHH
Confidence            999999999996  688777888977766554443

DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.

>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases

Probab=98.04  E-value=2.4e-05  Score=63.98  Aligned_cols=97  Identities=24%  Similarity=0.252  Sum_probs=70.9

Q ss_pred             cCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHh-hcCCC
Q 036413          133 GSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCG-YYKLD  211 (346)
Q Consensus       133 gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~-~y~~~  211 (346)
                      .+|+ ++..|++.+|.+||+++++||..|+.|... |  ..+.+.++..+|.+..++.+      . +...++. .|++.
T Consensus         9 ~~~~-~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~-~--~~la~~~~~~~~~~~~vd~d------~-~~~~~~~~~~~v~   77 (109)
T cd02993           9 AEIE-ALAKGERRNQSTLVVLYAPWCPFCQAMEAS-Y--EELAEKLAGSNVKVAKFNAD------G-EQREFAKEELQLK   77 (109)
T ss_pred             HHHH-HHHhhhhcCCCEEEEEECCCCHHHHHHhHH-H--HHHHHHhccCCeEEEEEECC------c-cchhhHHhhcCCC
Confidence            3454 666778889999999999999999999655 3  34555666236999998877      3 2245664 69999


Q ss_pred             CCceEEEEeCCCCceEEEEeCC-CChHHHHH
Q 036413          212 SLPVVLVIDPITGEKMRKWCGM-VDPVSLLE  241 (346)
Q Consensus       212 ~~P~i~iidp~tge~l~~~~G~-~~~~~~i~  241 (346)
                      .||++.++++. +.....+.|. .+.+.+++
T Consensus        78 ~~Pti~~f~~~-~~~~~~y~g~~~~~~~l~~  107 (109)
T cd02993          78 SFPTILFFPKN-SRQPIKYPSEQRDVDSLLM  107 (109)
T ss_pred             cCCEEEEEcCC-CCCceeccCCCCCHHHHHh
Confidence            99999999864 4456667773 57766543

APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red

>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes

Probab=98.01  E-value=4.3e-05  Score=60.28  Aligned_cols=93  Identities=15%  Similarity=0.369  Sum_probs=68.9

Q ss_pred             CHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCCCC
Q 036413          134 SFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSL  213 (346)
Q Consensus       134 sf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~  213 (346)
                      +|++++..+.  +|.++|++..+||..|+.+.+. |  +.+.+-+. .++.|+.++.+      .  -..++..|++..+
T Consensus         4 ~~~~~~~~~~--~~~v~v~f~~~~C~~C~~~~~~-l--~~l~~~~~-~~i~~~~vd~~------~--~~~~~~~~~i~~~   69 (97)
T cd02984           4 EFEELLKSDA--SKLLVLHFWAPWAEPCKQMNQV-F--EELAKEAF-PSVLFLSIEAE------E--LPEISEKFEITAV   69 (97)
T ss_pred             HHHHHHhhCC--CCEEEEEEECCCCHHHHHHhHH-H--HHHHHHhC-CceEEEEEccc------c--CHHHHHhcCCccc
Confidence            5677777775  8999999999999999999542 2  22322335 58888888766      2  2457889999999


Q ss_pred             ceEEEEeCCCCceEEEEeCCCChHHHHHHH
Q 036413          214 PVVLVIDPITGEKMRKWCGMVDPVSLLEDL  243 (346)
Q Consensus       214 P~i~iidp~tge~l~~~~G~~~~~~~i~~L  243 (346)
                      |++.++.  .|+.+.+..|. .++++.+.|
T Consensus        70 Pt~~~~~--~g~~~~~~~g~-~~~~l~~~~   96 (97)
T cd02984          70 PTFVFFR--NGTIVDRVSGA-DPKELAKKV   96 (97)
T ss_pred             cEEEEEE--CCEEEEEEeCC-CHHHHHHhh
Confidence            9999996  58888888884 455555443

PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.

>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]

Probab=97.98  E-value=1.5e-05  Score=83.55  Aligned_cols=85  Identities=15%  Similarity=0.309  Sum_probs=70.1

Q ss_pred             HHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHH-HHHH---hhcC-C
Q 036413          136 EKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSEC-RKVC---GYYK-L  210 (346)
Q Consensus       136 ~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg-~~~~---~~y~-~  210 (346)
                      ++|...||+++|+|||.|--.+|-.||+|.++.+.|++|.++|| +|||-..+|-++     -|+= ..|.   +... -
T Consensus        33 ~eAf~~A~~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN-~~FV~IKVDREE-----RPDvD~~Ym~~~q~~tG~  106 (667)
T COG1331          33 EEAFAKAKEEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILN-ENFVPVKVDREE-----RPDVDSLYMNASQAITGQ  106 (667)
T ss_pred             HHHHHHHHHhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHH-hCceeeeEChhh-----ccCHHHHHHHHHHHhccC
Confidence            68999999999999999999999999999999999999999999 999999987763     4431 1122   2221 2


Q ss_pred             CCCceEEEEeCCCCceE
Q 036413          211 DSLPVVLVIDPITGEKM  227 (346)
Q Consensus       211 ~~~P~i~iidp~tge~l  227 (346)
                      ...|.-+++.| .|+-+
T Consensus       107 GGWPLtVfLTP-d~kPF  122 (667)
T COG1331         107 GGWPLTVFLTP-DGKPF  122 (667)
T ss_pred             CCCceeEEECC-CCcee
Confidence            57999999999 57755

>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily

Probab=97.97  E-value=5e-05  Score=67.30  Aligned_cols=94  Identities=15%  Similarity=0.121  Sum_probs=72.8

Q ss_pred             hhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHH-------------------HH
Q 036413          143 SDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSEC-------------------RK  203 (346)
Q Consensus       143 k~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg-------------------~~  203 (346)
                      ...+|.++|++..+||..|+.+.      +.+.++.+ .++.++.++.++  .  ..+.                   ..
T Consensus        60 ~~~gk~vll~F~a~wC~~C~~~~------p~l~~l~~-~~~~vi~V~~~~--~--~~~~~~~~~~~~~~f~~v~~D~~~~  128 (173)
T TIGR00385        60 FIQGKPVLLNVWASWCPPCRAEH------PYLNELAK-DGLPIVGVDYKD--Q--SQNALKFLKELGNPYQAILIDPNGK  128 (173)
T ss_pred             hcCCCEEEEEEECCcCHHHHHHH------HHHHHHHH-cCCEEEEEECCC--C--hHHHHHHHHHcCCCCceEEECCCCc
Confidence            44689999999999999999873      55677777 788888887651  0  1111                   23


Q ss_pred             HHhhcCCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHH
Q 036413          204 VCGYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFME  248 (346)
Q Consensus       204 ~~~~y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~  248 (346)
                      +...|++..+|+..+||+ .|+.+.++.|.++.+++.+.|.+++.
T Consensus       129 ~~~~~~v~~~P~~~~id~-~G~i~~~~~G~~~~~~l~~~l~~~~~  172 (173)
T TIGR00385       129 LGLDLGVYGAPETFLVDG-NGVILYRHAGPLNNEVWTEGFLPAME  172 (173)
T ss_pred             hHHhcCCeeCCeEEEEcC-CceEEEEEeccCCHHHHHHHHHHHhh
Confidence            445677778999999997 59999999999999999999988874

Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.

>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein

Probab=97.91  E-value=6.7e-05  Score=60.48  Aligned_cols=98  Identities=16%  Similarity=0.280  Sum_probs=70.6

Q ss_pred             cccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCC
Q 036413          131 FNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKL  210 (346)
Q Consensus       131 ~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~  210 (346)
                      -..+|++++.   +.+|.+||+++++||..|+.+...+   ..+.+-++ ..+.|..++.+      ..+...++..|++
T Consensus         6 ~~~~~~~~i~---~~~~~~lv~f~a~wC~~C~~~~~~~---~~~a~~~~-~~~~~~~v~~~------~~~~~~~~~~~~i   72 (109)
T cd03002           6 TPKNFDKVVH---NTNYTTLVEFYAPWCGHCKNLKPEY---AKAAKELD-GLVQVAAVDCD------EDKNKPLCGKYGV   72 (109)
T ss_pred             chhhHHHHHh---cCCCeEEEEEECCCCHHHHhhChHH---HHHHHHhc-CCceEEEEecC------ccccHHHHHHcCC
Confidence            3456776664   4578899999999999999986432   23444455 66778888887      5556789999999


Q ss_pred             CCCceEEEEeCCC---CceEEEEeCCCChHHHHH
Q 036413          211 DSLPVVLVIDPIT---GEKMRKWCGMVDPVSLLE  241 (346)
Q Consensus       211 ~~~P~i~iidp~t---ge~l~~~~G~~~~~~~i~  241 (346)
                      ..+|++.++.+..   +.....+.|..+.+.+++
T Consensus        73 ~~~Pt~~~~~~~~~~~~~~~~~~~G~~~~~~l~~  106 (109)
T cd03002          73 QGFPTLKVFRPPKKASKHAVEDYNGERSAKAIVD  106 (109)
T ss_pred             CcCCEEEEEeCCCcccccccccccCccCHHHHHH
Confidence            9999999999632   124455678777665543

MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.

>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox

Probab=97.89  E-value=8e-05  Score=62.00  Aligned_cols=97  Identities=14%  Similarity=0.209  Sum_probs=72.7

Q ss_pred             ccccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHH-hhc
Q 036413          130 MFNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVC-GYY  208 (346)
Q Consensus       130 ~~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~-~~y  208 (346)
                      +-..+|+++... .++++++||+++.+||..|+.|.-.   =+.+.+.++ ++..|..++.+      ...  .++ ..|
T Consensus        14 l~~~~f~~~~~v-~~~~~~vlV~FyA~WC~~Ck~l~p~---~~~la~~~~-~~v~~~~Vd~d------~~~--~l~~~~~   80 (113)
T cd03006          14 FYKGQLDYAEEL-RTDAEVSLVMYYAPWDAQSQAARQE---FEQVAQKLS-DQVLFVAINCW------WPQ--GKCRKQK   80 (113)
T ss_pred             echhhhHHHHhc-ccCCCEEEEEEECCCCHHHHHHHHH---HHHHHHHhc-CCeEEEEEECC------CCh--HHHHHhc
Confidence            446778887554 7888999999999999999998421   124444456 67888888877      332  466 589


Q ss_pred             CCCCCceEEEEeCCCCceEEEEeCCCChHHHHH
Q 036413          209 KLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLE  241 (346)
Q Consensus       209 ~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~  241 (346)
                      ++..||++.+.-  .|+......|..+.+.++.
T Consensus        81 ~I~~~PTl~lf~--~g~~~~~y~G~~~~~~i~~  111 (113)
T cd03006          81 HFFYFPVIHLYY--RSRGPIEYKGPMRAPYMEK  111 (113)
T ss_pred             CCcccCEEEEEE--CCccceEEeCCCCHHHHHh
Confidence            999999999884  5777777889888776654

ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.

>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=97.85  E-value=8.2e-05  Score=57.84  Aligned_cols=91  Identities=18%  Similarity=0.220  Sum_probs=67.5

Q ss_pred             HHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHh--ccCcEEEEEeecCCCCCCCChHHHHHHhhcCCCCCce
Q 036413          138 AKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTI--RASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPV  215 (346)
Q Consensus       138 A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i--~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~  215 (346)
                      ....+.++++.++|++.+++|..|+.+... |  ..+.+-+  + .++.|..++.+      .  ...++..|++..+|+
T Consensus         7 ~~~~~i~~~~~~~v~f~~~~C~~C~~~~~~-~--~~~~~~~~~~-~~~~~~~v~~~------~--~~~~~~~~~i~~~Pt   74 (101)
T cd02961           7 NFDELVKDSKDVLVEFYAPWCGHCKALAPE-Y--EKLAKELKGD-GKVVVAKVDCT------A--NNDLCSEYGVRGYPT   74 (101)
T ss_pred             HHHHHHhCCCcEEEEEECCCCHHHHhhhHH-H--HHHHHHhccC-CceEEEEeecc------c--hHHHHHhCCCCCCCE
Confidence            344455556699999999999999999543 3  2344445  5 78888888766      3  467899999999999


Q ss_pred             EEEEeCCCCceEEEEeCCCChHHHHH
Q 036413          216 VLVIDPITGEKMRKWCGMVDPVSLLE  241 (346)
Q Consensus       216 i~iidp~tge~l~~~~G~~~~~~~i~  241 (346)
                      +.++++. |..+....|..+++++.+
T Consensus        75 ~~~~~~~-~~~~~~~~g~~~~~~i~~   99 (101)
T cd02961          75 IKLFPNG-SKEPVKYEGPRTLESLVE   99 (101)
T ss_pred             EEEEcCC-CcccccCCCCcCHHHHHh
Confidence            9999973 466666778777776654

Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies

>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=97.82  E-value=0.00019  Score=59.23  Aligned_cols=93  Identities=12%  Similarity=0.234  Sum_probs=76.0

Q ss_pred             ccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhc-cCcEEEEEeecCCCCCCCChHHHHHHhhcCC
Q 036413          132 NGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIR-ASNFIFWQVYDDDDDDDDDSECRKVCGYYKL  210 (346)
Q Consensus       132 ~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~-~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~  210 (346)
                      ..+|+.....+...+|.++|++.++||.+|..+      .|.+.++-. -.+-+|+.+|++      .  -..+++.|++
T Consensus         7 ~~~~~~~~~~~~~~~kliVvdF~a~wCgPCk~i------~P~~~~La~~y~~v~Flkvdvd------e--~~~~~~~~~V   72 (106)
T KOG0907|consen    7 VSDLDLVLSAAEAGDKLVVVDFYATWCGPCKAI------APKFEKLAEKYPDVVFLKVDVD------E--LEEVAKEFNV   72 (106)
T ss_pred             hhhHHHHHHHhhCCCCeEEEEEECCCCcchhhh------hhHHHHHHHHCCCCEEEEEecc------c--CHhHHHhcCc
Confidence            456788888888889999999999999999998      567777665 124799999999      5  7889999999


Q ss_pred             CCCceEEEEeCCCCceEEEEeCCCChHHHHH
Q 036413          211 DSLPVVLVIDPITGEKMRKWCGMVDPVSLLE  241 (346)
Q Consensus       211 ~~~P~i~iidp~tge~l~~~~G~~~~~~~i~  241 (346)
                      ...|++.++-  .|+.+..+.|. ++.++.+
T Consensus        73 ~~~PTf~f~k--~g~~~~~~vGa-~~~~l~~  100 (106)
T KOG0907|consen   73 KAMPTFVFYK--GGEEVDEVVGA-NKAELEK  100 (106)
T ss_pred             eEeeEEEEEE--CCEEEEEEecC-CHHHHHH
Confidence            9999999994  69999998884 3443333

>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains

Probab=97.80  E-value=0.0002  Score=54.31  Aligned_cols=89  Identities=19%  Similarity=0.243  Sum_probs=65.7

Q ss_pred             HHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhc-cCcEEEEEeecCCCCCCCChHHHHHHhhcCCCCC
Q 036413          135 FEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIR-ASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSL  213 (346)
Q Consensus       135 f~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~-~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~  213 (346)
                      |+.++...    +.+||++.+++|..|+.+.+      .+.++.+ ..++.|..++.+      .  ...++..|++..+
T Consensus         3 ~~~~~~~~----~~~ll~~~~~~C~~C~~~~~------~~~~~~~~~~~~~~~~i~~~------~--~~~~~~~~~v~~~   64 (93)
T cd02947           3 FEELIKSA----KPVVVDFWAPWCGPCKAIAP------VLEELAEEYPKVKFVKVDVD------E--NPELAEEYGVRSI   64 (93)
T ss_pred             hHHHHhcC----CcEEEEEECCCChhHHHhhH------HHHHHHHHCCCceEEEEECC------C--ChhHHHhcCcccc
Confidence            44444444    89999999999999998854      3333333 168888888777      3  4568889999999


Q ss_pred             ceEEEEeCCCCceEEEEeCCCChHHHHHHH
Q 036413          214 PVVLVIDPITGEKMRKWCGMVDPVSLLEDL  243 (346)
Q Consensus       214 P~i~iidp~tge~l~~~~G~~~~~~~i~~L  243 (346)
                      |++.++.  .|+.+..+.|..+.+.+.+.|
T Consensus        65 P~~~~~~--~g~~~~~~~g~~~~~~l~~~i   92 (93)
T cd02947          65 PTFLFFK--NGKEVDRVVGADPKEELEEFL   92 (93)
T ss_pred             cEEEEEE--CCEEEEEEecCCCHHHHHHHh
Confidence            9999997  478888889977766555543

Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio

>PHA02278 thioredoxin-like protein

Probab=97.80  E-value=0.00019  Score=58.68  Aligned_cols=85  Identities=16%  Similarity=0.226  Sum_probs=62.6

Q ss_pred             hcCcEEEEEecCCCCccccccccccCCCHHHHHHhcc--CcEEEEEeecCCCCCCCChHHHHHHhhcCCCCCceEEEEeC
Q 036413          144 DENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRA--SNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVLVIDP  221 (346)
Q Consensus       144 ~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~--~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~i~iidp  221 (346)
                      ++++.++|+++.+||.+|+.|.      +.+.++-.+  ...-|+.++++.   + .-+...++..|++.+.|++++.. 
T Consensus        12 ~~~~~vvV~F~A~WCgpCk~m~------p~l~~l~~~~~~~~~~~~vdvd~---~-~~d~~~l~~~~~I~~iPT~i~fk-   80 (103)
T PHA02278         12 RQKKDVIVMITQDNCGKCEILK------SVIPMFQESGDIKKPILTLNLDA---E-DVDREKAVKLFDIMSTPVLIGYK-   80 (103)
T ss_pred             hCCCcEEEEEECCCCHHHHhHH------HHHHHHHhhhcCCceEEEEECCc---c-ccccHHHHHHCCCccccEEEEEE-
Confidence            5889999999999999999994      444444330  223366677762   0 11145589999999999999998 


Q ss_pred             CCCceEEEEeCCCChHHHH
Q 036413          222 ITGEKMRKWCGMVDPVSLL  240 (346)
Q Consensus       222 ~tge~l~~~~G~~~~~~~i  240 (346)
                       .|+.+.+..|..+++.+.
T Consensus        81 -~G~~v~~~~G~~~~~~l~   98 (103)
T PHA02278         81 -DGQLVKKYEDQVTPMQLQ   98 (103)
T ss_pred             -CCEEEEEEeCCCCHHHHH
Confidence             599999999987776543

>PLN00410 U5 snRNP protein, DIM1 family; Provisional

Probab=97.79  E-value=0.00019  Score=62.30  Aligned_cols=102  Identities=11%  Similarity=0.119  Sum_probs=74.3

Q ss_pred             ccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhcc--CcEEEEEeecCCCCCCCChHHHHHHhhcC
Q 036413          132 NGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRA--SNFIFWQVYDDDDDDDDDSECRKVCGYYK  209 (346)
Q Consensus       132 ~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~--~nFVfw~~~~~~~~~~~~~eg~~~~~~y~  209 (346)
                      ...|++|+..+  .+|+++|++..+||.+|..|      +|.+.++-.+  +...|+.+|++      .  ...++..|+
T Consensus        11 ~~e~d~~I~~~--~~~lVVvdF~A~WCgpCk~m------~p~l~~la~~~~~~~~~~kVDVD------e--~~dla~~y~   74 (142)
T PLN00410         11 GWAVDQAILAE--EERLVVIRFGHDWDETCMQM------DEVLASVAETIKNFAVIYLVDIT------E--VPDFNTMYE   74 (142)
T ss_pred             HHHHHHHHHhc--CCCEEEEEEECCCChhHHHH------HHHHHHHHHHcCCceEEEEEECC------C--CHHHHHHcC
Confidence            34567777644  78999999999999999998      4444444430  33566999988      3  357999999


Q ss_pred             CCCCceEEEEeCCCCc-eEEEEeC--------CCChHHHHHHHHHHHHcC
Q 036413          210 LDSLPVVLVIDPITGE-KMRKWCG--------MVDPVSLLEDLLSFMESG  250 (346)
Q Consensus       210 ~~~~P~i~iidp~tge-~l~~~~G--------~~~~~~~i~~L~~fl~~~  250 (346)
                      +.+.|.+.++- +.|+ ++....|        ..+.++|++.+..++...
T Consensus        75 I~~~~t~~~ff-k~g~~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~~~~a  123 (142)
T PLN00410         75 LYDPCTVMFFF-RNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGA  123 (142)
T ss_pred             ccCCCcEEEEE-ECCeEEEEEecccccccccccCCHHHHHHHHHHHHHHH
Confidence            99776666454 3577 6666677        578889999988887543

>TIGR01126 pdi_dom protein disulfide-isomerase domain

Probab=97.79  E-value=0.00021  Score=56.39  Aligned_cols=94  Identities=16%  Similarity=0.262  Sum_probs=68.3

Q ss_pred             CHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccC--cEEEEEeecCCCCCCCChHHHHHHhhcCCC
Q 036413          134 SFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRAS--NFIFWQVYDDDDDDDDDSECRKVCGYYKLD  211 (346)
Q Consensus       134 sf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~--nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~  211 (346)
                      +|++++.    +++.++|+++++||..|+.+ ...|  +.+.+.++ .  ++.+...+.+        +...++..|++.
T Consensus         5 ~~~~~~~----~~~~~~i~f~~~~C~~c~~~-~~~~--~~~~~~~~-~~~~~~~~~~d~~--------~~~~~~~~~~i~   68 (102)
T TIGR01126         5 NFDDIVL----SNKDVLVEFYAPWCGHCKNL-APEY--EKLAKELK-GDPDIVLAKVDAT--------AEKDLASRFGVS   68 (102)
T ss_pred             hHHHHhc----cCCcEEEEEECCCCHHHHhh-ChHH--HHHHHHhc-cCCceEEEEEEcc--------chHHHHHhCCCC
Confidence            4555553    79999999999999999998 3444  34555555 4  5777666555        346788999999


Q ss_pred             CCceEEEEeCCCCceEEEEeCCCChHHHHHHHHH
Q 036413          212 SLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLS  245 (346)
Q Consensus       212 ~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~  245 (346)
                      .+|++.++++  |+.+....|..+.+.|...|.+
T Consensus        69 ~~P~~~~~~~--~~~~~~~~g~~~~~~l~~~i~~  100 (102)
T TIGR01126        69 GFPTIKFFPK--GKKPVDYEGGRDLEAIVEFVNE  100 (102)
T ss_pred             cCCEEEEecC--CCcceeecCCCCHHHHHHHHHh
Confidence            9999999996  3436678898787765555443

This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.

>TIGR01068 thioredoxin thioredoxin

Probab=97.79  E-value=0.0003  Score=55.15  Aligned_cols=88  Identities=16%  Similarity=0.281  Sum_probs=66.8

Q ss_pred             hcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCCCCceEEEEeCCC
Q 036413          144 DENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVLVIDPIT  223 (346)
Q Consensus       144 ~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~i~iidp~t  223 (346)
                      ..+|.++|+++++||..|..+...+   ..+.+-++ .++.|+.++.+      ..  ..+++.|++..+|++.++.  .
T Consensus        12 ~~~~~vvi~f~~~~C~~C~~~~~~l---~~~~~~~~-~~~~~~~vd~~------~~--~~~~~~~~v~~~P~~~~~~--~   77 (101)
T TIGR01068        12 SSDKPVLVDFWAPWCGPCKMIAPIL---EELAKEYE-GKVKFVKLNVD------EN--PDIAAKYGIRSIPTLLLFK--N   77 (101)
T ss_pred             hcCCcEEEEEECCCCHHHHHhCHHH---HHHHHHhc-CCeEEEEEECC------CC--HHHHHHcCCCcCCEEEEEe--C
Confidence            4478999999999999999985432   24444446 67888888877      32  3578889999999999995  5


Q ss_pred             CceEEEEeCCCChHHHHHHHHH
Q 036413          224 GEKMRKWCGMVDPVSLLEDLLS  245 (346)
Q Consensus       224 ge~l~~~~G~~~~~~~i~~L~~  245 (346)
                      |+.+....|..+.+++...|.+
T Consensus        78 g~~~~~~~g~~~~~~l~~~l~~   99 (101)
T TIGR01068        78 GKEVDRSVGALPKAALKQLINK   99 (101)
T ss_pred             CcEeeeecCCCCHHHHHHHHHh
Confidence            8877777888877766666554

Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.

>PRK09381 trxA thioredoxin; Provisional

Probab=97.78  E-value=0.00031  Score=56.92  Aligned_cols=96  Identities=15%  Similarity=0.159  Sum_probs=68.4

Q ss_pred             CHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCCCC
Q 036413          134 SFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSL  213 (346)
Q Consensus       134 sf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~  213 (346)
                      +|.+...   +.+++++|+++++||..|+.+...+   +.+.+-.+ .++.|..++.+      ..  ..++..|++..+
T Consensus        12 ~~~~~v~---~~~~~vvv~f~~~~C~~C~~~~p~~---~~l~~~~~-~~~~~~~vd~~------~~--~~~~~~~~v~~~   76 (109)
T PRK09381         12 SFDTDVL---KADGAILVDFWAEWCGPCKMIAPIL---DEIADEYQ-GKLTVAKLNID------QN--PGTAPKYGIRGI   76 (109)
T ss_pred             hHHHHHh---cCCCeEEEEEECCCCHHHHHHhHHH---HHHHHHhC-CCcEEEEEECC------CC--hhHHHhCCCCcC
Confidence            4555443   4588999999999999999884222   12333344 56777787777      32  346788999999


Q ss_pred             ceEEEEeCCCCceEEEEeCCCChHHHHHHHHHH
Q 036413          214 PVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSF  246 (346)
Q Consensus       214 P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~f  246 (346)
                      |++.++.  .|+.+....|..+.+++...|.+.
T Consensus        77 Pt~~~~~--~G~~~~~~~G~~~~~~l~~~i~~~  107 (109)
T PRK09381         77 PTLLLFK--NGEVAATKVGALSKGQLKEFLDAN  107 (109)
T ss_pred             CEEEEEe--CCeEEEEecCCCCHHHHHHHHHHh
Confidence            9999995  688888888988877666555544

>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein

Probab=97.77  E-value=0.00035  Score=56.39  Aligned_cols=88  Identities=11%  Similarity=0.050  Sum_probs=62.6

Q ss_pred             hhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCCCCceEEEEeC
Q 036413          142 GSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVLVIDP  221 (346)
Q Consensus       142 Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~i~iidp  221 (346)
                      +.+.+|.++|+++++||..|+.+...+   +.+.+-.+..+..|..++.+      .   ...++.|++..+|++.++. 
T Consensus        13 ~i~~~~~vvv~F~a~wC~~Ck~~~p~l---~~~~~~~~~~~~~~~~vd~d------~---~~~~~~~~v~~~Pt~~~~~-   79 (102)
T cd02948          13 LLSNKGLTVVDVYQEWCGPCKAVVSLF---KKIKNELGDDLLHFATAEAD------T---IDTLKRYRGKCEPTFLFYK-   79 (102)
T ss_pred             HHccCCeEEEEEECCcCHhHHHHhHHH---HHHHHHcCCCcEEEEEEeCC------C---HHHHHHcCCCcCcEEEEEE-
Confidence            335689999999999999999985432   22333333123456666555      3   3578999999999988886 


Q ss_pred             CCCceEEEEeCCCChHHHHHHHH
Q 036413          222 ITGEKMRKWCGMVDPVSLLEDLL  244 (346)
Q Consensus       222 ~tge~l~~~~G~~~~~~~i~~L~  244 (346)
                       .|+.+....|. +++.+.+.|.
T Consensus        80 -~g~~~~~~~G~-~~~~~~~~i~  100 (102)
T cd02948          80 -NGELVAVIRGA-NAPLLNKTIT  100 (102)
T ss_pred             -CCEEEEEEecC-ChHHHHHHHh
Confidence             69999998894 7776666554

Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which

>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus

Probab=97.75  E-value=0.00019  Score=57.95  Aligned_cols=96  Identities=10%  Similarity=0.151  Sum_probs=66.6

Q ss_pred             CHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhc--cCcEEEEEeecCCCCCCCChHHHHHHhhcCCC
Q 036413          134 SFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIR--ASNFIFWQVYDDDDDDDDDSECRKVCGYYKLD  211 (346)
Q Consensus       134 sf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~--~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~  211 (346)
                      +++++.+.+++ ++.+||++.++||..|+.+.. +|.  .+.+-++  ..++.+...+.+      .  ...+++.|++.
T Consensus         4 ~~~~~~~~~~~-~~~vlv~f~a~wC~~C~~~~p-~l~--~l~~~~~~~~~~~~~~~vd~~------~--~~~~~~~~~I~   71 (104)
T cd03000           4 DLDDSFKDVRK-EDIWLVDFYAPWCGHCKKLEP-VWN--EVGAELKSSGSPVRVGKLDAT------A--YSSIASEFGVR   71 (104)
T ss_pred             echhhhhhhcc-CCeEEEEEECCCCHHHHhhCh-HHH--HHHHHHHhcCCcEEEEEEECc------c--CHhHHhhcCCc
Confidence            56677777655 678899999999999999965 332  2333332  024777777766      2  24678899999


Q ss_pred             CCceEEEEeCCCCceEEEEeCCCChHHHHHHHH
Q 036413          212 SLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLL  244 (346)
Q Consensus       212 ~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~  244 (346)
                      .+|++.++.  .| .+....|..+.+++.+.+.
T Consensus        72 ~~Pt~~l~~--~~-~~~~~~G~~~~~~l~~~~~  101 (104)
T cd03000          72 GYPTIKLLK--GD-LAYNYRGPRTKDDIVEFAN  101 (104)
T ss_pred             cccEEEEEc--CC-CceeecCCCCHHHHHHHHH
Confidence            999999995  24 3455788777666555444

The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.

>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif

Probab=97.71  E-value=7.4e-05  Score=61.54  Aligned_cols=91  Identities=18%  Similarity=0.144  Sum_probs=62.5

Q ss_pred             hhhcCcEEEEEecCCCCccccccccccC----------------CCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHH
Q 036413          142 GSDENKWLLVNLQSPKEFTSHTLNRDTW----------------ADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVC  205 (346)
Q Consensus       142 Ak~~~K~LlV~l~~~~~f~c~~lnRdvw----------------~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~  205 (346)
                      +...+|.++|++.+++|..|+.+.+.+=                ..+.+.++++ ++-+-|....+        +...++
T Consensus        16 ~~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~~i~i~~~~~~~~~~~~~~~-~~~~~~~~~~d--------~~~~~~   86 (123)
T cd03011          16 ESLSGKPVLVYFWATWCPVCRFTSPTVNQLAADYPVVSVALRSGDDGAVARFMQ-KKGYGFPVIND--------PDGVIS   86 (123)
T ss_pred             HHhCCCEEEEEEECCcChhhhhhChHHHHHHhhCCEEEEEccCCCHHHHHHHHH-HcCCCccEEEC--------CCcHHH
Confidence            3345699999999999999998842221                1244445554 33333333222        124688


Q ss_pred             hhcCCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHH
Q 036413          206 GYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDL  243 (346)
Q Consensus       206 ~~y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L  243 (346)
                      ..|++...|++.|||+ .| ......|..+++++.+++
T Consensus        87 ~~~~i~~~P~~~vid~-~g-i~~~~~g~~~~~~~~~~~  122 (123)
T cd03011          87 ARWGVSVTPAIVIVDP-GG-IVFVTTGVTSEWGLRLRL  122 (123)
T ss_pred             HhCCCCcccEEEEEcC-CC-eEEEEeccCCHHHHHhhc
Confidence            8899999999999997 46 777889999998887654

The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.

>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=97.68  E-value=0.00024  Score=57.63  Aligned_cols=93  Identities=17%  Similarity=0.293  Sum_probs=64.4

Q ss_pred             ccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhcc-----CcEEEEEeecCCCCCCCChHHHHHHh
Q 036413          132 NGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRA-----SNFIFWQVYDDDDDDDDDSECRKVCG  206 (346)
Q Consensus       132 ~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~-----~nFVfw~~~~~~~~~~~~~eg~~~~~  206 (346)
                      ..+|++++    +.++++||+++++||..|+.|... |.  .+.+.+++     .++.|..++.+      ..  ..++.
T Consensus         8 ~~~f~~~i----~~~~~vlv~F~a~wC~~C~~~~p~-~~--~~a~~~~~~~~~~~~~~~~~vd~d------~~--~~l~~   72 (108)
T cd02996           8 SGNIDDIL----QSAELVLVNFYADWCRFSQMLHPI-FE--EAAAKIKEEFPDAGKVVWGKVDCD------KE--SDIAD   72 (108)
T ss_pred             HhhHHHHH----hcCCEEEEEEECCCCHHHHhhHHH-HH--HHHHHHhhccCCCCcEEEEEEECC------CC--HHHHH
Confidence            44677655    457899999999999999999643 22  12222220     14777788777      33  46899


Q ss_pred             hcCCCCCceEEEEeCCCCce-EEEEeCCCChHHHHH
Q 036413          207 YYKLDSLPVVLVIDPITGEK-MRKWCGMVDPVSLLE  241 (346)
Q Consensus       207 ~y~~~~~P~i~iidp~tge~-l~~~~G~~~~~~~i~  241 (346)
                      .|++.+||++.+.-  .|+. .....|..+.+++++
T Consensus        73 ~~~v~~~Ptl~~~~--~g~~~~~~~~g~~~~~~l~~  106 (108)
T cd02996          73 RYRINKYPTLKLFR--NGMMMKREYRGQRSVEALAE  106 (108)
T ss_pred             hCCCCcCCEEEEEe--CCcCcceecCCCCCHHHHHh
Confidence            99999999999985  4763 456678777665543

It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.

>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=97.67  E-value=0.00022  Score=57.20  Aligned_cols=94  Identities=14%  Similarity=0.181  Sum_probs=66.9

Q ss_pred             ccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCC
Q 036413          132 NGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLD  211 (346)
Q Consensus       132 ~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~  211 (346)
                      ..+|++...   ..++.++|++.++||..|+.|.. +|  +.+.+-++ .++.|..++.+      .  ...+++.|++.
T Consensus         8 ~~~f~~~i~---~~~~~v~v~f~a~wC~~C~~~~p-~~--~~~~~~~~-~~~~~~~vd~~------~--~~~~~~~~~i~   72 (104)
T cd03004           8 PEDFPELVL---NRKEPWLVDFYAPWCGPCQALLP-EL--RKAARALK-GKVKVGSVDCQ------K--YESLCQQANIR   72 (104)
T ss_pred             HHHHHHHHh---cCCCeEEEEEECCCCHHHHHHHH-HH--HHHHHHhc-CCcEEEEEECC------c--hHHHHHHcCCC
Confidence            345666544   45679999999999999999942 22  22223334 56778888777      3  34688999999


Q ss_pred             CCceEEEEeCCCCceEEEEeCCCC-hHHHHH
Q 036413          212 SLPVVLVIDPITGEKMRKWCGMVD-PVSLLE  241 (346)
Q Consensus       212 ~~P~i~iidp~tge~l~~~~G~~~-~~~~i~  241 (346)
                      .||++.++.. .|+.+....|..+ .+++.+
T Consensus        73 ~~Pt~~~~~~-g~~~~~~~~G~~~~~~~l~~  102 (104)
T cd03004          73 AYPTIRLYPG-NASKYHSYNGWHRDADSILE  102 (104)
T ss_pred             cccEEEEEcC-CCCCceEccCCCCCHHHHHh
Confidence            9999999985 3477888889765 766543

This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.

>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44

Probab=97.63  E-value=0.00018  Score=58.16  Aligned_cols=85  Identities=12%  Similarity=0.136  Sum_probs=60.5

Q ss_pred             hhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCCCCceEEEEeC
Q 036413          142 GSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVLVIDP  221 (346)
Q Consensus       142 Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~i~iidp  221 (346)
                      |...+|.+||+++.+||..|+.+.. +|  +.+.+..+  ++.|..++.+      . +-..++..|++..||++.+++.
T Consensus        14 ~~~~g~~vlV~F~a~WC~~C~~~~p-~l--~~la~~~~--~~~~~~vd~~------~-~~~~l~~~~~V~~~PT~~lf~~   81 (100)
T cd02999          14 AFNREDYTAVLFYASWCPFSASFRP-HF--NALSSMFP--QIRHLAIEES------S-IKPSLLSRYGVVGFPTILLFNS   81 (100)
T ss_pred             HhcCCCEEEEEEECCCCHHHHhHhH-HH--HHHHHHhc--cCceEEEECC------C-CCHHHHHhcCCeecCEEEEEcC
Confidence            3567999999999999999998832 11  12233333  4666666544      1 2347889999999999999984


Q ss_pred             CCCceEEEEeCCCChHHHHH
Q 036413          222 ITGEKMRKWCGMVDPVSLLE  241 (346)
Q Consensus       222 ~tge~l~~~~G~~~~~~~i~  241 (346)
                        | .+....|..+.+.+++
T Consensus        82 --g-~~~~~~G~~~~~~l~~   98 (100)
T cd02999          82 --T-PRVRYNGTRTLDSLAA   98 (100)
T ss_pred             --C-ceeEecCCCCHHHHHh
Confidence              5 6677889877766544

CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.

>PRK15412 thiol:disulfide interchange protein DsbE; Provisional

Probab=97.62  E-value=0.00046  Score=61.88  Aligned_cols=93  Identities=15%  Similarity=0.114  Sum_probs=69.8

Q ss_pred             hcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChH-HH-------------------H
Q 036413          144 DENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSE-CR-------------------K  203 (346)
Q Consensus       144 ~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~e-g~-------------------~  203 (346)
                      ..+|+++||+..+||..|+..-      +.+.++-+ .++.++.++.++     +.+ ..                   .
T Consensus        66 ~~gk~vvv~FwatwC~~C~~e~------p~l~~l~~-~~~~vi~v~~~~-----~~~~~~~~~~~~~~~~~~~~~D~~~~  133 (185)
T PRK15412         66 TQGKPVLLNVWATWCPTCRAEH------QYLNQLSA-QGIRVVGMNYKD-----DRQKAISWLKELGNPYALSLFDGDGM  133 (185)
T ss_pred             cCCCEEEEEEECCCCHHHHHHH------HHHHHHHH-cCCEEEEEECCC-----CHHHHHHHHHHcCCCCceEEEcCCcc
Confidence            3689999999999999998763      45566666 678788887652     211 22                   2


Q ss_pred             HHhhcCCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHHc
Q 036413          204 VCGYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMES  249 (346)
Q Consensus       204 ~~~~y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~~  249 (346)
                      +...|++..+|+..|||+ .|+...+..|.++.+++-+.+...+..
T Consensus       134 ~~~~~gv~~~P~t~vid~-~G~i~~~~~G~~~~~~l~~~i~~~~~~  178 (185)
T PRK15412        134 LGLDLGVYGAPETFLIDG-NGIIRYRHAGDLNPRVWESEIKPLWEK  178 (185)
T ss_pred             HHHhcCCCcCCeEEEECC-CceEEEEEecCCCHHHHHHHHHHHHHH
Confidence            334677888999999997 599899999988888877777776644

>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=97.60  E-value=0.00034  Score=55.91  Aligned_cols=90  Identities=26%  Similarity=0.410  Sum_probs=66.9

Q ss_pred             cCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCCC
Q 036413          133 GSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDS  212 (346)
Q Consensus       133 gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~  212 (346)
                      .+|++..    .++|.+||++.++||..|+.|.. +|.  .+.+-++ .++.|..++.+      ..  ..++..|++..
T Consensus         9 ~~f~~~v----~~~~~~~v~f~a~wC~~C~~~~p-~~~--~~a~~~~-~~~~~~~vd~~------~~--~~~~~~~~v~~   72 (101)
T cd03003           9 GDFDAAV----NSGEIWFVNFYSPRCSHCHDLAP-TWR--EFAKEMD-GVIRIGAVNCG------DD--RMLCRSQGVNS   72 (101)
T ss_pred             hhHHHHh----cCCCeEEEEEECCCChHHHHhHH-HHH--HHHHHhc-CceEEEEEeCC------cc--HHHHHHcCCCc
Confidence            3566655    34589999999999999999843 221  2444455 77888888888      32  46889999999


Q ss_pred             CceEEEEeCCCCceEEEEeCCCChHHHH
Q 036413          213 LPVVLVIDPITGEKMRKWCGMVDPVSLL  240 (346)
Q Consensus       213 ~P~i~iidp~tge~l~~~~G~~~~~~~i  240 (346)
                      ||++.++.  .|+.+....|..+.+.+.
T Consensus        73 ~Pt~~~~~--~g~~~~~~~G~~~~~~l~   98 (101)
T cd03003          73 YPSLYVFP--SGMNPEKYYGDRSKESLV   98 (101)
T ss_pred             cCEEEEEc--CCCCcccCCCCCCHHHHH
Confidence            99998884  588777788877776554

This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.

>TIGR02740 TraF-like TraF-like protein

Probab=97.59  E-value=0.00069  Score=64.76  Aligned_cols=117  Identities=13%  Similarity=0.065  Sum_probs=79.8

Q ss_pred             CcccccccCHHHHHH------HhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCC--
Q 036413          126 PVDLMFNGSFEKAKD------VGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDD--  197 (346)
Q Consensus       126 P~~l~~~gsf~~A~~------~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~--  197 (346)
                      |++-+..-.|.++..      .+.-.+|++||++..+||..|+.+      .+.+.++-++-++.+..++++......  
T Consensus       140 P~~~~a~~~~~~~~~~~~~~~l~~l~~k~~Lv~F~AswCp~C~~~------~P~L~~la~~yg~~Vi~VsvD~~~~~~fp  213 (271)
T TIGR02740       140 PVSTLALDAHDTTAKKQKDRVMKDLAKKSGLFFFFKSDCPYCHQQ------APILQAFEDRYGIEVLPVSVDGGPLPGFP  213 (271)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEECCCCccHHHH------hHHHHHHHHHcCcEEEEEeCCCCccccCC
Confidence            344344444544433      234458999999999999999987      577777776335777777776200000  


Q ss_pred             -ChHHHHHHhhcCCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHH
Q 036413          198 -DSECRKVCGYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFME  248 (346)
Q Consensus       198 -~~eg~~~~~~y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~  248 (346)
                       ......++..|++...|++.++++.+|+...+..|.++.+++.+.+.....
T Consensus       214 ~~~~d~~la~~~gV~~vPtl~Lv~~~~~~v~~v~~G~~s~~eL~~~i~~~a~  265 (271)
T TIGR02740       214 NARPDAGQAQQLKIRTVPAVFLADPDPNQFTPIGFGVMSADELVDRILLAAH  265 (271)
T ss_pred             cccCCHHHHHHcCCCcCCeEEEEECCCCEEEEEEeCCCCHHHHHHHHHHHhc
Confidence             000123678899999999999998666665566799999999888877654

This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.

>PTZ00051 thioredoxin; Provisional

Probab=97.57  E-value=0.00057  Score=53.97  Aligned_cols=85  Identities=14%  Similarity=0.187  Sum_probs=62.0

Q ss_pred             HHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhc-cCcEEEEEeecCCCCCCCChHHHHHHhhcCCCCCce
Q 036413          137 KAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIR-ASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPV  215 (346)
Q Consensus       137 ~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~-~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~  215 (346)
                      +......+.+|.++|++.++||..|+.+.      +.+.++.+ -.++.|..++.+        +...++..|++..+|+
T Consensus         9 ~~~~~~~~~~~~vli~f~~~~C~~C~~~~------~~l~~l~~~~~~~~~~~vd~~--------~~~~~~~~~~v~~~Pt   74 (98)
T PTZ00051          9 AEFESTLSQNELVIVDFYAEWCGPCKRIA------PFYEECSKEYTKMVFVKVDVD--------ELSEVAEKENITSMPT   74 (98)
T ss_pred             HHHHHHHhcCCeEEEEEECCCCHHHHHHh------HHHHHHHHHcCCcEEEEEECc--------chHHHHHHCCCceeeE
Confidence            34455567899999999999999999984      33344333 024677776655        2457899999999999


Q ss_pred             EEEEeCCCCceEEEEeCCCChHH
Q 036413          216 VLVIDPITGEKMRKWCGMVDPVS  238 (346)
Q Consensus       216 i~iidp~tge~l~~~~G~~~~~~  238 (346)
                      +.++.  .|+.+..+.|. .+++
T Consensus        75 ~~~~~--~g~~~~~~~G~-~~~~   94 (98)
T PTZ00051         75 FKVFK--NGSVVDTLLGA-NDEA   94 (98)
T ss_pred             EEEEe--CCeEEEEEeCC-CHHH
Confidence            87774  68999899995 4443

>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX

Probab=97.55  E-value=0.00064  Score=54.15  Aligned_cols=92  Identities=15%  Similarity=0.318  Sum_probs=63.5

Q ss_pred             ccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCC
Q 036413          132 NGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLD  211 (346)
Q Consensus       132 ~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~  211 (346)
                      ..+|++++     +++| ||+++++||..|+.+... |.  .+.+..+..++.|..++.+      ..  ..++..|++.
T Consensus         8 ~~~f~~~~-----~~~~-lv~f~a~wC~~C~~~~p~-~~--~l~~~~~~~~v~~~~vd~~------~~--~~~~~~~~i~   70 (101)
T cd02994           8 DSNWTLVL-----EGEW-MIEFYAPWCPACQQLQPE-WE--EFADWSDDLGINVAKVDVT------QE--PGLSGRFFVT   70 (101)
T ss_pred             hhhHHHHh-----CCCE-EEEEECCCCHHHHHHhHH-HH--HHHHhhccCCeEEEEEEcc------CC--HhHHHHcCCc
Confidence            45677654     2455 599999999999998543 22  2233333136888888877      33  3478899999


Q ss_pred             CCceEEEEeCCCCceEEEEeCCCChHHHHHHH
Q 036413          212 SLPVVLVIDPITGEKMRKWCGMVDPVSLLEDL  243 (346)
Q Consensus       212 ~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L  243 (346)
                      .||++.++.  .|+ +....|..+.+++.+.|
T Consensus        71 ~~Pt~~~~~--~g~-~~~~~G~~~~~~l~~~i   99 (101)
T cd02994          71 ALPTIYHAK--DGV-FRRYQGPRDKEDLISFI   99 (101)
T ss_pred             ccCEEEEeC--CCC-EEEecCCCCHHHHHHHH
Confidence            999998873  577 46678977776665544

TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.

>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1

Probab=97.52  E-value=0.00073  Score=56.43  Aligned_cols=96  Identities=16%  Similarity=0.271  Sum_probs=72.8

Q ss_pred             cCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhcc-Cc-EEEEEeecCCCCCCCChHHHHHHhhcCC
Q 036413          133 GSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRA-SN-FIFWQVYDDDDDDDDDSECRKVCGYYKL  210 (346)
Q Consensus       133 gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~-~n-FVfw~~~~~~~~~~~~~eg~~~~~~y~~  210 (346)
                      ..|++|+..|  ++|.++|.+..+||.+|..|      +|.+.++-++ .+ .+|+.+|+++        -..++..|.+
T Consensus         3 ~~~d~~i~~~--~~klVVVdF~a~WC~pCk~m------dp~l~ela~~~~~~~~f~kVDVDe--------v~dva~~y~I   66 (114)
T cd02986           3 KEVDQAIKST--AEKVLVLRFGRDEDAVCLQL------DDILSKTSHDLSKMASIYLVDVDK--------VPVYTQYFDI   66 (114)
T ss_pred             HHHHHHHHhc--CCCEEEEEEeCCCChhHHHH------HHHHHHHHHHccCceEEEEEeccc--------cHHHHHhcCc
Confidence            4678888888  89999999999999999999      4555555540 15 8899999982        3559999999


Q ss_pred             CCCceEEEEeCCCCceEEE---------EeCCC-ChHHHHHHHHHH
Q 036413          211 DSLPVVLVIDPITGEKMRK---------WCGMV-DPVSLLEDLLSF  246 (346)
Q Consensus       211 ~~~P~i~iidp~tge~l~~---------~~G~~-~~~~~i~~L~~f  246 (346)
                      ..-|+.+++-  .|+-|++         |.|.+ +.++||.-+...
T Consensus        67 ~amPtfvffk--ngkh~~~d~gt~~~~k~~~~~~~k~~~idi~e~~  110 (114)
T cd02986          67 SYIPSTIFFF--NGQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVI  110 (114)
T ss_pred             eeCcEEEEEE--CCcEEEEecCCCCCcEEEEEcCchhHHHHHHHHH
Confidence            9999999776  3665543         45544 567888776543

Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.

>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.51  E-value=0.00014  Score=68.52  Aligned_cols=53  Identities=26%  Similarity=0.421  Sum_probs=42.5

Q ss_pred             CeeEEEEEcCCCccc---------------------cCC-cceEEecCCCCCCCCccCCcccchhhcCCCceeEEE
Q 036413          290 LVCRIGVRLPDGQEA---------------------NQT-RQFRLTRPDPGAPKPLDYNSKMTFQESGLNNSVILV  343 (346)
Q Consensus       290 ~~trIqiRlpdG~ri---------------------~~~-~~f~l~~~~P~~~~~l~~~~d~TieeagL~n~~vl~  343 (346)
                      ..||||||||||+.+                     .++ .+|.|.+.||.. --..++...+|++.||.++++++
T Consensus       209 s~crlQiRl~DG~Tl~~tF~a~E~L~~VR~wVd~n~~~~~~P~~f~t~fPR~-tf~edD~~KpLq~L~L~Psa~li  283 (290)
T KOG2689|consen  209 SQCRLQIRLPDGQTLTQTFNARETLAAVRLWVDLNRGDGLDPYSFHTGFPRV-TFTEDDELKPLQELDLVPSAVLI  283 (290)
T ss_pred             cceEEEEEcCCCCeeeeecCchhhHHHHHHHHHHhccCCCCCeeeecCCCce-ecccccccccHHHhccccchhee
Confidence            799999999999998                     233 599999999953 23445667799999999887764

>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1

Probab=97.51  E-value=0.00047  Score=54.63  Aligned_cols=92  Identities=18%  Similarity=0.281  Sum_probs=65.4

Q ss_pred             cCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhcc-CcEEEEEeecCCCCCCCChHHHHHHhhcCCC
Q 036413          133 GSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRA-SNFIFWQVYDDDDDDDDDSECRKVCGYYKLD  211 (346)
Q Consensus       133 gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~-~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~  211 (346)
                      .+|++++.   +.+|.+||+++++||..|+.|...+   ..+.+.++. .++.|..++.+      ..   .++..|.+.
T Consensus         8 ~~f~~~i~---~~~~~~~v~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~~~id~~------~~---~~~~~~~~~   72 (104)
T cd02995           8 KNFDEVVL---DSDKDVLVEFYAPWCGHCKALAPIY---EELAEKLKGDDNVVIAKMDAT------AN---DVPSEFVVD   72 (104)
T ss_pred             hhhHHHHh---CCCCcEEEEEECCCCHHHHHHhhHH---HHHHHHhcCCCCEEEEEEeCc------ch---hhhhhccCC
Confidence            34555443   4468999999999999999995433   555666661 26999998877      33   367778889


Q ss_pred             CCceEEEEeCCCCc--eEEEEeCCCChHHHHH
Q 036413          212 SLPVVLVIDPITGE--KMRKWCGMVDPVSLLE  241 (346)
Q Consensus       212 ~~P~i~iidp~tge--~l~~~~G~~~~~~~i~  241 (346)
                      .+|++.++.+  |+  ......|..+...|++
T Consensus        73 ~~Pt~~~~~~--~~~~~~~~~~g~~~~~~l~~  102 (104)
T cd02995          73 GFPTILFFPA--GDKSNPIKYEGDRTLEDLIK  102 (104)
T ss_pred             CCCEEEEEcC--CCcCCceEccCCcCHHHHHh
Confidence            9999999974  44  4555678777665544

PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu

>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5

Probab=97.51  E-value=0.00048  Score=54.59  Aligned_cols=91  Identities=19%  Similarity=0.265  Sum_probs=65.3

Q ss_pred             CHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhc----cCcEEEEEeecCCCCCCCChHHHHHHhhcC
Q 036413          134 SFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIR----ASNFIFWQVYDDDDDDDDDSECRKVCGYYK  209 (346)
Q Consensus       134 sf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~----~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~  209 (346)
                      +|++   ..+..+|.++|+++++||..|+.+.      +.+.++.+    ..++.+...+.+      .. ...++..|+
T Consensus         9 ~~~~---~~~~~~~~~~v~f~a~~C~~C~~~~------~~~~~~~~~~~~~~~~~~~~id~~------~~-~~~~~~~~~   72 (105)
T cd02998           9 NFDK---VVGDDKKDVLVEFYAPWCGHCKNLA------PEYEKLAAVFANEDDVVIAKVDAD------EA-NKDLAKKYG   72 (105)
T ss_pred             cHHH---HhcCCCCcEEEEEECCCCHHHHhhC------hHHHHHHHHhCCCCCEEEEEEECC------Cc-chhhHHhCC
Confidence            4555   3344578999999999999999884      33333332    146888888777      32 457899999


Q ss_pred             CCCCceEEEEeCCCCceEEEEeCCCChHHHHH
Q 036413          210 LDSLPVVLVIDPITGEKMRKWCGMVDPVSLLE  241 (346)
Q Consensus       210 ~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~  241 (346)
                      +..+|++.++.+ .|+....+.|..+.+.+.+
T Consensus        73 i~~~P~~~~~~~-~~~~~~~~~g~~~~~~l~~  103 (105)
T cd02998          73 VSGFPTLKFFPK-GSTEPVKYEGGRDLEDLVK  103 (105)
T ss_pred             CCCcCEEEEEeC-CCCCccccCCccCHHHHHh
Confidence            999999999986 3456666778777665543

The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER

>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative

Probab=97.48  E-value=0.0013  Score=55.42  Aligned_cols=101  Identities=9%  Similarity=0.178  Sum_probs=69.0

Q ss_pred             CHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCC---ChHHHHHHhhcCC
Q 036413          134 SFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDD---DSECRKVCGYYKL  210 (346)
Q Consensus       134 sf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~---~~eg~~~~~~y~~  210 (346)
                      +.++..+. -+.++..+||+..+||.+|+.|      .|.+.++.++.+.-++-++++.+..-+   ..+-..+...|+.
T Consensus        12 t~~~~~~~-i~~~~~~iv~f~~~~Cp~C~~~------~P~l~~~~~~~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i   84 (122)
T TIGR01295        12 TVVRALEA-LDKKETATFFIGRKTCPYCRKF------SGTLSGVVAQTKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGI   84 (122)
T ss_pred             CHHHHHHH-HHcCCcEEEEEECCCChhHHHH------hHHHHHHHHhcCCcEEEEECCCccCcCcccHHHHHHHHHHcCC
Confidence            44443333 3568889999999999999999      688888887344557777777311001   1244567777765


Q ss_pred             C----CCceEEEEeCCCCceEEEEeCC-CChHHHHHHHHHHH
Q 036413          211 D----SLPVVLVIDPITGEKMRKWCGM-VDPVSLLEDLLSFM  247 (346)
Q Consensus       211 ~----~~P~i~iidp~tge~l~~~~G~-~~~~~~i~~L~~fl  247 (346)
                      .    ..|+++++.  .|+.+.++.|. .+.    ++|..|+
T Consensus        85 ~~~i~~~PT~v~~k--~Gk~v~~~~G~~~~~----~~l~~~~  120 (122)
T TIGR01295        85 PTSFMGTPTFVHIT--DGKQVSVRCGSSTTA----QELQDIA  120 (122)
T ss_pred             cccCCCCCEEEEEe--CCeEEEEEeCCCCCH----HHHHHHh
Confidence            4    499999998  59999999894 444    4455444

This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.

>PRK03147 thiol-disulfide oxidoreductase; Provisional

Probab=97.48  E-value=0.00088  Score=58.43  Aligned_cols=92  Identities=18%  Similarity=0.164  Sum_probs=65.9

Q ss_pred             cCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChH-------------------HHHHH
Q 036413          145 ENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSE-------------------CRKVC  205 (346)
Q Consensus       145 ~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~e-------------------g~~~~  205 (346)
                      .+|+++|++.+++|..|+...+.+  ++...++-+ .++.++.++.+.     +.+                   -..++
T Consensus        60 ~~k~~~l~f~a~~C~~C~~~~~~l--~~~~~~~~~-~~~~vi~i~~d~-----~~~~~~~~~~~~~~~~~~~~d~~~~~~  131 (173)
T PRK03147         60 KGKGVFLNFWGTWCKPCEKEMPYM--NELYPKYKE-KGVEIIAVNVDE-----TELAVKNFVNRYGLTFPVAIDKGRQVI  131 (173)
T ss_pred             CCCEEEEEEECCcCHHHHHHHHHH--HHHHHHhhc-CCeEEEEEEcCC-----CHHHHHHHHHHhCCCceEEECCcchHH
Confidence            578899999999999997753221  122333334 567788887762     211                   24667


Q ss_pred             hhcCCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHH
Q 036413          206 GYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLS  245 (346)
Q Consensus       206 ~~y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~  245 (346)
                      +.|++..+|++.|||+ .|+.+..+.|..+.+++.+.|.+
T Consensus       132 ~~~~v~~~P~~~lid~-~g~i~~~~~g~~~~~~l~~~l~~  170 (173)
T PRK03147        132 DAYGVGPLPTTFLIDK-DGKVVKVITGEMTEEQLEEYLEK  170 (173)
T ss_pred             HHcCCCCcCeEEEECC-CCcEEEEEeCCCCHHHHHHHHHH
Confidence            8899999999999997 69999899998888777666653

>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein

Probab=97.42  E-value=0.001  Score=55.61  Aligned_cols=72  Identities=17%  Similarity=0.230  Sum_probs=57.4

Q ss_pred             cCcEEEEEecCCCCccccccccccCCCHHHHHHhcc--CcEEEEEeecCCCCCCCChHHHHHHhhcCCCCCceEEEEeCC
Q 036413          145 ENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRA--SNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVLVIDPI  222 (346)
Q Consensus       145 ~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~--~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~i~iidp~  222 (346)
                      .++.++|+++.+||.+|+.|      .+.+.++-.+  +...|+.++++      .  ...++..|++.+.|++.++-  
T Consensus        13 ~~~~vVV~F~A~WCgpCk~m------~P~le~la~~~~~~v~f~kVDvD------~--~~~la~~~~V~~iPTf~~fk--   76 (114)
T cd02954          13 EEKVVVIRFGRDWDPVCMQM------DEVLAKIAEDVSNFAVIYLVDID------E--VPDFNKMYELYDPPTVMFFF--   76 (114)
T ss_pred             CCCEEEEEEECCCChhHHHH------HHHHHHHHHHccCceEEEEEECC------C--CHHHHHHcCCCCCCEEEEEE--
Confidence            68899999999999999999      4555555541  34568898888      3  24799999999999999998  


Q ss_pred             CCceEEEEeC
Q 036413          223 TGEKMRKWCG  232 (346)
Q Consensus       223 tge~l~~~~G  232 (346)
                      .|+.+....|
T Consensus        77 ~G~~v~~~~G   86 (114)
T cd02954          77 RNKHMKIDLG   86 (114)
T ss_pred             CCEEEEEEcC
Confidence            5898877655

It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.

>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains

Probab=97.41  E-value=0.0012  Score=52.20  Aligned_cols=90  Identities=21%  Similarity=0.360  Sum_probs=62.9

Q ss_pred             cCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhcc--CcEEEEEeecCCCCCCCChHHHHHHhhcCC
Q 036413          133 GSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRA--SNFIFWQVYDDDDDDDDDSECRKVCGYYKL  210 (346)
Q Consensus       133 gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~--~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~  210 (346)
                      .+|++++.    .+ .+||+++++||..|+.+... |.  .+.+-.+.  .++.|..++.+      ..  ..+++.|++
T Consensus         8 ~~f~~~~~----~~-~~lv~f~a~wC~~C~~~~p~-~~--~~~~~~~~~~~~~~~~~vd~~------~~--~~~~~~~~v   71 (102)
T cd03005           8 DNFDHHIA----EG-NHFVKFFAPWCGHCKRLAPT-WE--QLAKKFNNENPSVKIAKVDCT------QH--RELCSEFQV   71 (102)
T ss_pred             HHHHHHhh----cC-CEEEEEECCCCHHHHHhCHH-HH--HHHHHHhccCCcEEEEEEECC------CC--hhhHhhcCC
Confidence            35666663    23 39999999999999998532 21  23333331  26888887776      32  367889999


Q ss_pred             CCCceEEEEeCCCCceEEEEeCCCChHHHH
Q 036413          211 DSLPVVLVIDPITGEKMRKWCGMVDPVSLL  240 (346)
Q Consensus       211 ~~~P~i~iidp~tge~l~~~~G~~~~~~~i  240 (346)
                      ..+|++.++.  .|..+....|..+.+++.
T Consensus        72 ~~~Pt~~~~~--~g~~~~~~~G~~~~~~l~   99 (102)
T cd03005          72 RGYPTLLLFK--DGEKVDKYKGTRDLDSLK   99 (102)
T ss_pred             CcCCEEEEEe--CCCeeeEeeCCCCHHHHH
Confidence            9999999995  477777788987766543

Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.

>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions

Probab=97.41  E-value=0.001  Score=54.64  Aligned_cols=83  Identities=17%  Similarity=0.292  Sum_probs=60.1

Q ss_pred             cCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhc-cCcEEEEEeecCCCCCCCChHHHHHHhhcCCC
Q 036413          133 GSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIR-ASNFIFWQVYDDDDDDDDDSECRKVCGYYKLD  211 (346)
Q Consensus       133 gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~-~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~  211 (346)
                      ..|.+....+. .+++++|+++++||..|+.|.      +.+.++.. -.+..|..++.+      ..   .+++.|++.
T Consensus        12 ~~f~~~i~~~~-~~~~vvv~F~a~~c~~C~~l~------~~l~~la~~~~~v~f~~vd~~------~~---~l~~~~~i~   75 (113)
T cd02957          12 KEFLEEVTKAS-KGTRVVVHFYEPGFPRCKILD------SHLEELAAKYPETKFVKINAE------KA---FLVNYLDIK   75 (113)
T ss_pred             HHHHHHHHccC-CCCEEEEEEeCCCCCcHHHHH------HHHHHHHHHCCCcEEEEEEch------hh---HHHHhcCCC
Confidence            34555554322 358999999999999999884      44444444 013456677666      32   889999999


Q ss_pred             CCceEEEEeCCCCceEEEEeCC
Q 036413          212 SLPVVLVIDPITGEKMRKWCGM  233 (346)
Q Consensus       212 ~~P~i~iidp~tge~l~~~~G~  233 (346)
                      ++|++.++-  .|+.+..+.|.
T Consensus        76 ~~Pt~~~f~--~G~~v~~~~G~   95 (113)
T cd02957          76 VLPTLLVYK--NGELIDNIVGF   95 (113)
T ss_pred             cCCEEEEEE--CCEEEEEEecH
Confidence            999999987  59999888873

Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te

>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=97.36  E-value=0.0017  Score=51.51  Aligned_cols=85  Identities=13%  Similarity=0.231  Sum_probs=59.5

Q ss_pred             hcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCCCCceEEEEeCCC
Q 036413          144 DENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVLVIDPIT  223 (346)
Q Consensus       144 ~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~i~iidp~t  223 (346)
                      +.++.++|+++++||..|+.+... |  ..+.+-+. ..+.|...+.+        +...+++.|++..+|++.++.+. 
T Consensus        16 ~~~~~vlv~f~a~~C~~C~~~~~~-~--~~~~~~~~-~~~~~~~id~~--------~~~~~~~~~~i~~~P~~~~~~~~-   82 (103)
T cd03001          16 NSDDVWLVEFYAPWCGHCKNLAPE-W--KKAAKALK-GIVKVGAVDAD--------VHQSLAQQYGVRGFPTIKVFGAG-   82 (103)
T ss_pred             cCCCcEEEEEECCCCHHHHHHhHH-H--HHHHHHhc-CCceEEEEECc--------chHHHHHHCCCCccCEEEEECCC-
Confidence            456789999999999999999422 2  23333445 56666666655        23568899999999999999852 


Q ss_pred             CceEEEEeCCCChHHHHH
Q 036413          224 GEKMRKWCGMVDPVSLLE  241 (346)
Q Consensus       224 ge~l~~~~G~~~~~~~i~  241 (346)
                      ......+.|..+.+.+++
T Consensus        83 ~~~~~~~~g~~~~~~l~~  100 (103)
T cd03001          83 KNSPQDYQGGRTAKAIVS  100 (103)
T ss_pred             CcceeecCCCCCHHHHHH
Confidence            244556778777665543

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.

>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=97.32  E-value=0.0024  Score=53.77  Aligned_cols=100  Identities=16%  Similarity=0.173  Sum_probs=72.4

Q ss_pred             ccCHHHHHHHhhhcCcEEEEEecCCCCcc--cc--ccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhh
Q 036413          132 NGSFEKAKDVGSDENKWLLVNLQSPKEFT--SH--TLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGY  207 (346)
Q Consensus       132 ~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~--c~--~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~  207 (346)
                      ..+|++.+   ++..+.++|+.-..||.+  |+  ++-+.+  .+.-.+++++....|..+|++      ..  ..+++.
T Consensus        16 ~~nF~~~v---~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~--~~~aa~~l~~~~v~~~kVD~d------~~--~~La~~   82 (120)
T cd03065          16 EKNYKQVL---KKYDVLCLLYHEPVESDKEAQKQFQMEELV--LELAAQVLEDKGIGFGLVDSK------KD--AKVAKK   82 (120)
T ss_pred             hhhHHHHH---HhCCceEEEEECCCcCChhhChhhcchhhH--HHHHHHHhhcCCCEEEEEeCC------CC--HHHHHH
Confidence            45566554   455678888888888866  76  331111  234455554367899999888      33  789999


Q ss_pred             cCCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHH
Q 036413          208 YKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFM  247 (346)
Q Consensus       208 y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl  247 (346)
                      |++.++|++.++.  .|+.+. +.|..+.+.+++.|.+.+
T Consensus        83 ~~I~~iPTl~lfk--~G~~v~-~~G~~~~~~l~~~l~~~~  119 (120)
T cd03065          83 LGLDEEDSIYVFK--DDEVIE-YDGEFAADTLVEFLLDLI  119 (120)
T ss_pred             cCCccccEEEEEE--CCEEEE-eeCCCCHHHHHHHHHHHh
Confidence            9999999999997  688776 889888888887777654

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2

>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions

Probab=97.29  E-value=0.0025  Score=56.99  Aligned_cols=99  Identities=20%  Similarity=0.261  Sum_probs=68.5

Q ss_pred             cCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhc-cCcEEEEEeecCCCCCCCChHHHHHHhhcCCC
Q 036413          133 GSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIR-ASNFIFWQVYDDDDDDDDDSECRKVCGYYKLD  211 (346)
Q Consensus       133 gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~-~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~  211 (346)
                      ..|.++...+. .+++++|+++.+||.+|+.|+      +.+.++.. -.+..|+.++++      ..   .++..|++.
T Consensus        71 ~~f~~~v~~~~-~~~~VVV~Fya~wc~~Ck~m~------~~l~~LA~~~~~vkF~kVd~d------~~---~l~~~f~v~  134 (175)
T cd02987          71 EQFLDAIDKEG-KDTTVVVHIYEPGIPGCAALN------SSLLCLAAEYPAVKFCKIRAS------AT---GASDEFDTD  134 (175)
T ss_pred             HHHHHHHHhcC-CCcEEEEEEECCCCchHHHHH------HHHHHHHHHCCCeEEEEEecc------ch---hhHHhCCCC
Confidence            45665554322 346999999999999999994      45555554 024778888877      33   688999999


Q ss_pred             CCceEEEEeCCCCceEEEEeCCCC---hHHHHHHHHHHHHc
Q 036413          212 SLPVVLVIDPITGEKMRKWCGMVD---PVSLLEDLLSFMES  249 (346)
Q Consensus       212 ~~P~i~iidp~tge~l~~~~G~~~---~~~~i~~L~~fl~~  249 (346)
                      ..|+++|+-  .|+.+..+.|...   .+-..+.|..+|.+
T Consensus       135 ~vPTlllyk--~G~~v~~~vG~~~~~g~~f~~~~le~~L~~  173 (175)
T cd02987         135 ALPALLVYK--GGELIGNFVRVTEDLGEDFDAEDLESFLVE  173 (175)
T ss_pred             CCCEEEEEE--CCEEEEEEechHHhcCCCCCHHHHHHHHHh
Confidence            999999997  5998888876421   12234455555543

It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>PTZ00443 Thioredoxin domain-containing protein; Provisional

Probab=97.28  E-value=0.0025  Score=59.41  Aligned_cols=104  Identities=13%  Similarity=0.217  Sum_probs=75.2

Q ss_pred             ccccCHHHHHHHhh-hcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhc
Q 036413          130 MFNGSFEKAKDVGS-DENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYY  208 (346)
Q Consensus       130 ~~~gsf~~A~~~Ak-~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y  208 (346)
                      +-..+|++.....+ ..++.+||+++.+||..|+.+... |  +.+.+-++ ..+.|..++.+        +...+++.|
T Consensus        35 Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~-~--e~la~~~~-~~v~~~~VD~~--------~~~~l~~~~  102 (224)
T PTZ00443         35 LNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPA-W--ERLAKALK-GQVNVADLDAT--------RALNLAKRF  102 (224)
T ss_pred             CCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHH-H--HHHHHHcC-CCeEEEEecCc--------ccHHHHHHc
Confidence            34668888776553 356788999999999999999654 3  45555566 66666666555        235789999


Q ss_pred             CCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHH
Q 036413          209 KLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFM  247 (346)
Q Consensus       209 ~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl  247 (346)
                      ++..||++.+++  .|+.+....|..+.+++.+.+.+-+
T Consensus       103 ~I~~~PTl~~f~--~G~~v~~~~G~~s~e~L~~fi~~~~  139 (224)
T PTZ00443        103 AIKGYPTLLLFD--KGKMYQYEGGDRSTEKLAAFALGDF  139 (224)
T ss_pred             CCCcCCEEEEEE--CCEEEEeeCCCCCHHHHHHHHHHHH
Confidence            999999999999  5877766678777776655544433

>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB

Probab=97.21  E-value=0.0014  Score=57.57  Aligned_cols=122  Identities=11%  Similarity=0.163  Sum_probs=73.0

Q ss_pred             HHHhhcCCCcccccccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCC
Q 036413          118 NLASLYRPPVDLMFNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDD  197 (346)
Q Consensus       118 ~l~~lf~PP~~l~~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~  197 (346)
                      .+..+..|| .....-+-+++.-......++.|||+-.+||..|+..      .+.+.++-++-+|.+..++.++..-..
T Consensus        23 ~~~~~~~~~-~~~~~~~~~~~~G~~~~l~~~~lvnFWAsWCppCr~e------~P~L~~l~~~~~~~Vi~Vs~d~~~~~~   95 (153)
T TIGR02738        23 EITNLWAPP-QGLTAATDNAPQGRHANQDDYALVFFYQSTCPYCHQF------APVLKRFSQQFGLPVYAFSLDGQGLTG   95 (153)
T ss_pred             HHhhccccc-ccccccccccCcchhhhcCCCEEEEEECCCChhHHHH------HHHHHHHHHHcCCcEEEEEeCCCcccc
Confidence            444555554 2222222222223334455777999999999999887      567777666225666666666200000


Q ss_pred             -----ChHHHHHHhhc---CCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHH
Q 036413          198 -----DSECRKVCGYY---KLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSF  246 (346)
Q Consensus       198 -----~~eg~~~~~~y---~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~f  246 (346)
                           +..+......|   ++..+|+..+||+..|....+..|.++.+++.+.+.+.
T Consensus        96 fp~~~~~~~~~~~~~~~~~~v~~iPTt~LID~~G~~i~~~~~G~~s~~~l~~~I~~l  152 (153)
T TIGR02738        96 FPDPLPATPEVMQTFFPNPRPVVTPATFLVNVNTRKAYPVLQGAVDEAELANRMDEI  152 (153)
T ss_pred             cccccCCchHHHHHHhccCCCCCCCeEEEEeCCCCEEEEEeecccCHHHHHHHHHHh
Confidence                 00122233445   77899999999985444455788998888777666553

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.

>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif

Probab=97.18  E-value=0.0022  Score=52.99  Aligned_cols=75  Identities=12%  Similarity=0.290  Sum_probs=58.2

Q ss_pred             hhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccC--cEEEEEeecCCCCCCCChHHHHHHhhcCCCCCceEEEE
Q 036413          142 GSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRAS--NFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVLVI  219 (346)
Q Consensus       142 Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~--nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~i~ii  219 (346)
                      +.+++++++|++.++||..|+.|.      +.+.++.+ +  +..|+.++.+      .  -..+++.|++...|+++++
T Consensus        18 ~i~~~~~vvV~f~a~~c~~C~~~~------p~l~~la~-~~~~i~f~~Vd~~------~--~~~l~~~~~v~~vPt~l~f   82 (113)
T cd02989          18 IVKSSERVVCHFYHPEFFRCKIMD------KHLEILAK-KHLETKFIKVNAE------K--APFLVEKLNIKVLPTVILF   82 (113)
T ss_pred             HHhCCCcEEEEEECCCCccHHHHH------HHHHHHHH-HcCCCEEEEEEcc------c--CHHHHHHCCCccCCEEEEE
Confidence            335668999999999999999883      55555554 2  4677777776      2  3458899999999999999


Q ss_pred             eCCCCceEEEEeCC
Q 036413          220 DPITGEKMRKWCGM  233 (346)
Q Consensus       220 dp~tge~l~~~~G~  233 (346)
                      .  .|+.+..+.|.
T Consensus        83 k--~G~~v~~~~g~   94 (113)
T cd02989          83 K--NGKTVDRIVGF   94 (113)
T ss_pred             E--CCEEEEEEECc
Confidence            8  58988887764

The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.

>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif

Probab=97.13  E-value=0.0013  Score=54.60  Aligned_cols=89  Identities=15%  Similarity=0.109  Sum_probs=59.1

Q ss_pred             hhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCC----------------ChHHHHHH
Q 036413          142 GSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDD----------------DSECRKVC  205 (346)
Q Consensus       142 Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~----------------~~eg~~~~  205 (346)
                      +.-++|+++|++-++||..|+.+-      +.+.++-++.++.++.++.++ ..+.                ......++
T Consensus        21 ~~~~gk~vvv~F~a~~C~~C~~~~------~~l~~l~~~~~~~vv~v~~~~-~~~~~~~~~~~~~~~~~~~~~D~~~~~~   93 (127)
T cd03010          21 ADLKGKPYLLNVWASWCAPCREEH------PVLMALARQGRVPIYGINYKD-NPENALAWLARHGNPYAAVGFDPDGRVG   93 (127)
T ss_pred             HHcCCCEEEEEEEcCcCHHHHHHH------HHHHHHHHhcCcEEEEEECCC-CHHHHHHHHHhcCCCCceEEECCcchHH
Confidence            333589999999999999998764      344444441225555555321 0000                00123566


Q ss_pred             hhcCCCCCceEEEEeCCCCceEEEEeCCCChHH
Q 036413          206 GYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVS  238 (346)
Q Consensus       206 ~~y~~~~~P~i~iidp~tge~l~~~~G~~~~~~  238 (346)
                      ..|++..+|+..|||+ .|+.+.++.|.++.+.
T Consensus        94 ~~~~v~~~P~~~~ld~-~G~v~~~~~G~~~~~~  125 (127)
T cd03010          94 IDLGVYGVPETFLIDG-DGIIRYKHVGPLTPEV  125 (127)
T ss_pred             HhcCCCCCCeEEEECC-CceEEEEEeccCChHh
Confidence            7788889999999996 6999999999887654

Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.

>smart00804 TAP_C C-terminal domain of vertebrate Tap protein

Probab=97.12  E-value=0.00089  Score=50.12  Aligned_cols=42  Identities=19%  Similarity=0.464  Sum_probs=39.8

Q ss_pred             hhHHHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhhc
Q 036413            8 KQRKRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNNN   50 (346)
Q Consensus         8 ~~~~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~~   50 (346)
                      ..+.++|..|+.. ||-+.+-++.+|+.+|||++.|+..|-+.
T Consensus        10 ~~q~~~v~~~~~~-Tgmn~~~s~~cLe~~~Wd~~~Al~~F~~l   51 (63)
T smart00804       10 PEQQEMVQAFSAQ-TGMNAEYSQMCLEDNNWDYERALKNFTEL   51 (63)
T ss_pred             HHHHHHHHHHHHH-HCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence            5788999999999 99999999999999999999999999884

The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.

>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins

Probab=97.10  E-value=0.0014  Score=51.68  Aligned_cols=81  Identities=20%  Similarity=0.222  Sum_probs=57.8

Q ss_pred             HhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhc---cCcEEEEEeecCCCCCCCChH-----------------
Q 036413          141 VGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIR---ASNFIFWQVYDDDDDDDDDSE-----------------  200 (346)
Q Consensus       141 ~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~---~~nFVfw~~~~~~~~~~~~~e-----------------  200 (346)
                      .+...+|++||++..++|..|+..      .+.+.++.+   +.++.++.++.+..    +.+                 
T Consensus        14 ~~~~~~k~~ll~f~~~~C~~C~~~------~~~l~~~~~~~~~~~~~~~~v~~d~~----~~~~~~~~~~~~~~~~~~~~   83 (116)
T cd02966          14 LSDLKGKVVLVNFWASWCPPCRAE------MPELEALAKEYKDDGVEVVGVNVDDD----DPAAVKAFLKKYGITFPVLL   83 (116)
T ss_pred             hHHcCCCEEEEEeecccChhHHHH------hHHHHHHHHHhCCCCeEEEEEECCCC----CHHHHHHHHHHcCCCcceEE
Confidence            344448999999999999999765      244444443   14678888877720    022                 


Q ss_pred             --HHHHHhhcCCCCCceEEEEeCCCCceEEEEeC
Q 036413          201 --CRKVCGYYKLDSLPVVLVIDPITGEKMRKWCG  232 (346)
Q Consensus       201 --g~~~~~~y~~~~~P~i~iidp~tge~l~~~~G  232 (346)
                        ...+...|++..+|.+.|||| .|+.+..+.|
T Consensus        84 ~~~~~~~~~~~~~~~P~~~l~d~-~g~v~~~~~g  116 (116)
T cd02966          84 DPDGELAKAYGVRGLPTTFLIDR-DGRIRARHVG  116 (116)
T ss_pred             cCcchHHHhcCcCccceEEEECC-CCcEEEEecC
Confidence              256788899999999999998 5888877655

TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.

>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif

Probab=97.04  E-value=0.0025  Score=53.26  Aligned_cols=79  Identities=15%  Similarity=0.261  Sum_probs=53.3

Q ss_pred             hcCcEEEEEecCCCCccccccccccCCCHHHHHHhc---c--CcEEEEEeecCCCCCC----------------CChHHH
Q 036413          144 DENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIR---A--SNFIFWQVYDDDDDDD----------------DDSECR  202 (346)
Q Consensus       144 ~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~---~--~nFVfw~~~~~~~~~~----------------~~~eg~  202 (346)
                      -++|++||++..+||..|+.+.      +.+.++.+   +  .++.++.++.+...++                .+....
T Consensus        16 ~~gk~vll~Fwa~wC~~C~~~~------p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (131)
T cd03009          16 LEGKTVGLYFSASWCPPCRAFT------PKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRS   89 (131)
T ss_pred             hCCcEEEEEEECCCChHHHHHh------HHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHH
Confidence            3579999999999999998874      44444433   0  2576777776621000                001224


Q ss_pred             HHHhhcCCCCCceEEEEeCCCCceEEE
Q 036413          203 KVCGYYKLDSLPVVLVIDPITGEKMRK  229 (346)
Q Consensus       203 ~~~~~y~~~~~P~i~iidp~tge~l~~  229 (346)
                      .++..|++..+|++.|||+ .|+.+..
T Consensus        90 ~~~~~~~v~~~P~~~lid~-~G~i~~~  115 (131)
T cd03009          90 RLNRTFKIEGIPTLIILDA-DGEVVTT  115 (131)
T ss_pred             HHHHHcCCCCCCEEEEECC-CCCEEcc
Confidence            6778899999999999997 5886644

TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the

>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein

Probab=96.97  E-value=0.0018  Score=53.57  Aligned_cols=78  Identities=18%  Similarity=0.232  Sum_probs=56.2

Q ss_pred             ccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccC---cEEEEEeecCCCCCCCChHHHHHHhhc
Q 036413          132 NGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRAS---NFIFWQVYDDDDDDDDDSECRKVCGYY  208 (346)
Q Consensus       132 ~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~---nFVfw~~~~~~~~~~~~~eg~~~~~~y  208 (346)
                      ..+|++...   +.+|.++|+++++||..|+.|.. +|.  .+.+-++ +   .+.|..++.+      ......+++.|
T Consensus         8 ~~~f~~~i~---~~~~~vvV~f~a~wC~~C~~~~~-~~~--~la~~~~-~~~~~v~~~~vd~~------~~~~~~~~~~~   74 (114)
T cd02992           8 AASFNSALL---GSPSAWLVEFYASWCGHCRAFAP-TWK--KLARDLR-KWRPVVRVAAVDCA------DEENVALCRDF   74 (114)
T ss_pred             HHhHHHHHh---cCCCeEEEEEECCCCHHHHHHhH-HHH--HHHHHHH-hcCCceEEEEEecc------chhhHHHHHhC
Confidence            445666665   34589999999999999999954 333  2444444 2   3566666655      44557889999


Q ss_pred             CCCCCceEEEEeCC
Q 036413          209 KLDSLPVVLVIDPI  222 (346)
Q Consensus       209 ~~~~~P~i~iidp~  222 (346)
                      ++..||++.++.+.
T Consensus        75 ~i~~~Pt~~lf~~~   88 (114)
T cd02992          75 GVTGYPTLRYFPPF   88 (114)
T ss_pred             CCCCCCEEEEECCC
Confidence            99999999999863

QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.

>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding

Probab=96.97  E-value=0.011  Score=48.84  Aligned_cols=92  Identities=9%  Similarity=0.086  Sum_probs=62.8

Q ss_pred             HhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhc-cCcEEEEEeecCCCCCCCChHHHHHHhhcCCCCCceEEEE
Q 036413          141 VGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIR-ASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVLVI  219 (346)
Q Consensus       141 ~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~-~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~i~ii  219 (346)
                      .+.+.++-++|+++.+||..|+.+-      +.+.++.. ....-|..++.+      .  ...++..|++.+.|+++|.
T Consensus        17 ~~l~~~~~vvv~f~a~wC~~C~~~~------~~l~~la~~~~~i~~~~vd~d------~--~~~l~~~~~v~~vPt~~i~   82 (113)
T cd02975          17 KEMKNPVDLVVFSSKEGCQYCEVTK------QLLEELSELSDKLKLEIYDFD------E--DKEKAEKYGVERVPTTIFL   82 (113)
T ss_pred             HHhCCCeEEEEEeCCCCCCChHHHH------HHHHHHHHhcCceEEEEEeCC------c--CHHHHHHcCCCcCCEEEEE
Confidence            4456677799999999999999883      23333333 023446666665      2  3578899999999999999


Q ss_pred             eCCCCceEE--EEeCCCChHHHHHHHHHHHH
Q 036413          220 DPITGEKMR--KWCGMVDPVSLLEDLLSFME  248 (346)
Q Consensus       220 dp~tge~l~--~~~G~~~~~~~i~~L~~fl~  248 (346)
                      +.  |+...  ...|..+..+|.+.|...+.
T Consensus        83 ~~--g~~~~~~~~~G~~~~~el~~~i~~i~~  111 (113)
T cd02975          83 QD--GGKDGGIRYYGLPAGYEFASLIEDIVR  111 (113)
T ss_pred             eC--CeecceEEEEecCchHHHHHHHHHHHh
Confidence            84  22222  46787777777777766543

PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.

>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent

Probab=96.95  E-value=0.0041  Score=63.72  Aligned_cols=115  Identities=14%  Similarity=0.127  Sum_probs=77.0

Q ss_pred             HHHhhcCCCccc-ccccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCC
Q 036413          118 NLASLYRPPVDL-MFNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDD  196 (346)
Q Consensus       118 ~l~~lf~PP~~l-~~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~  196 (346)
                      ..+++|-.+..+ +-..+|++.+.. +..+|.+||+++.+||..|+.|...+   +.+.+-++..++.|..++++     
T Consensus       343 ~~~dl~~~~~Vv~L~~~nf~~~v~~-~~~~k~VLV~FyApWC~~Ck~m~P~~---eelA~~~~~~~v~~~kVdvD-----  413 (463)
T TIGR00424       343 AVADIFDSNNVVSLSRPGIENLLKL-EERKEAWLVVLYAPWCPFCQAMEASY---LELAEKLAGSGVKVAKFRAD-----  413 (463)
T ss_pred             ccccccCCCCeEECCHHHHHHHHhh-hcCCCeEEEEEECCCChHHHHHHHHH---HHHHHHhccCCcEEEEEECC-----
Confidence            356888665444 456678887643 67899999999999999999996542   44444444124677778777     


Q ss_pred             CChHHHHHHhhcCCCCCceEEEEeCCCCceEEEEe-CCCChHHHHHHH
Q 036413          197 DDSECRKVCGYYKLDSLPVVLVIDPITGEKMRKWC-GMVDPVSLLEDL  243 (346)
Q Consensus       197 ~~~eg~~~~~~y~~~~~P~i~iidp~tge~l~~~~-G~~~~~~~i~~L  243 (346)
                       ..+-...++.|++..||++.++... +....... |.-+.+.|+.-+
T Consensus       414 -~~~~~~~~~~~~I~~~PTii~Fk~g-~~~~~~Y~~g~R~~e~L~~Fv  459 (463)
T TIGR00424       414 -GDQKEFAKQELQLGSFPTILFFPKH-SSRPIKYPSEKRDVDSLMSFV  459 (463)
T ss_pred             -CCccHHHHHHcCCCccceEEEEECC-CCCceeCCCCCCCHHHHHHHH
Confidence             3322334578999999999999853 22333454 466777655433

This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.

>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF

Probab=96.91  E-value=0.0089  Score=56.77  Aligned_cols=96  Identities=10%  Similarity=0.090  Sum_probs=78.2

Q ss_pred             CcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCCh------HHHHHHhhcCCCCCceEEEE
Q 036413          146 NKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDS------ECRKVCGYYKLDSLPVVLVI  219 (346)
Q Consensus       146 ~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~------eg~~~~~~y~~~~~P~i~ii  219 (346)
                      ++|=||++....|.-|+.+      .+.|+.|-+.-+|-...++++.   .-.+      -....++.+++..+|.+.+|
T Consensus       150 ~~~gL~fFy~~~C~~C~~~------apil~~fa~~ygi~v~~VS~DG---~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv  220 (256)
T TIGR02739       150 QSYGLFFFYRGKSPISQKM------APVIQAFAKEYGISVIPISVDG---TLIPGLPNSRSDSGQAQHLGVKYFPALYLV  220 (256)
T ss_pred             hceeEEEEECCCCchhHHH------HHHHHHHHHHhCCeEEEEecCC---CCCCCCCCccCChHHHHhcCCccCceEEEE
Confidence            4799999999999999998      5778888875678888888882   0000      11335677888999999999


Q ss_pred             eCCCCceEEEEeCCCChHHHHHHHHHHHHcC
Q 036413          220 DPITGEKMRKWCGMVDPVSLLEDLLSFMESG  250 (346)
Q Consensus       220 dp~tge~l~~~~G~~~~~~~i~~L~~fl~~~  250 (346)
                      +|.|++..-+-.|.++.++|++++...+..|
T Consensus       221 ~~~t~~~~pv~~G~iS~deL~~Ri~~v~~~f  251 (256)
T TIGR02739       221 NPKSQKMSPLAYGFISQDELKERILNVLTQF  251 (256)
T ss_pred             ECCCCcEEEEeeccCCHHHHHHHHHHHHhcc
Confidence            9999988888899999999999999998877

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.

>PF03943 TAP_C: TAP C-terminal domain; InterPro: IPR005637 This entry contains the NXF family of shuttling transport receptors for nuclear export of mRNA, which include: vertebrate mRNA export factor TAP or nuclear RNA export factor 1 (NXF1)

Probab=96.91  E-value=0.00048  Score=49.38  Aligned_cols=42  Identities=21%  Similarity=0.465  Sum_probs=36.4

Q ss_pred             HHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhhcCCC
Q 036413           11 KRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNNNSNN   53 (346)
Q Consensus        11 ~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~~~~~   53 (346)
                      +++|.+|+.. ||-+.+-|..+|+.++||++.|+..|......
T Consensus         1 q~mv~~~s~~-Tgmn~~~s~~CL~~n~Wd~~~A~~~F~~l~~~   42 (51)
T PF03943_consen    1 QEMVQQFSQQ-TGMNLEWSQKCLEENNWDYERALQNFEELKAQ   42 (51)
T ss_dssp             HHHHHHHHHH-CSS-CCHHHHHHHHTTT-CCHHHHHHHHCCCT
T ss_pred             CHHHHHHHHH-HCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHc
Confidence            4689999999 99999999999999999999999999986543

Caenorhabditis elegans nuclear RNA export factor 1 (nxf-1). yeast mRNA export factor MEX67. Members of the NXF family have a modular structure. A nuclear localization sequence and a noncanonical RNA recognition motif (RRM) (see PDOC00030 from PROSITEDOC) followed by four LRR repeats are located in its N-terminal half. The C-terminal half contains a NTF2 domain (see PDOC50177 from PROSITEDOC) followed by a second domain, TAP-C. The TAP-C domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate nuclear shuttling [,]. The Tap-C domain is made of four alpha helices packed against each other. The arrangement of helices 1, 2 and 3 is similar to that seen in a UBA fold. and is joined to the next module by flexible 12-residue Pro-rich linker [, ].; GO: 0051028 mRNA transport, 0005634 nucleus; PDB: 1OAI_A 1GO5_A 2KHH_A 2JP7_A.

>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=96.89  E-value=0.003  Score=50.15  Aligned_cols=87  Identities=24%  Similarity=0.284  Sum_probs=60.5

Q ss_pred             CcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCC--CCceEEEEeCCC
Q 036413          146 NKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLD--SLPVVLVIDPIT  223 (346)
Q Consensus       146 ~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~--~~P~i~iidp~t  223 (346)
                      +++++|.+.+++|.+|..+-..+   +.|.+-.+ ..+.|..++.+        +...++..|++.  ++|+++++...+
T Consensus        12 ~~~~~~~f~~~~~~~~~~~~~~~---~~vA~~~~-~~v~f~~vd~~--------~~~~~~~~~~i~~~~~P~~~~~~~~~   79 (103)
T cd02982          12 GKPLLVLFYNKDDSESEELRERF---KEVAKKFK-GKLLFVVVDAD--------DFGRHLEYFGLKEEDLPVIAIINLSD   79 (103)
T ss_pred             CCCEEEEEEcCChhhHHHHHHHH---HHHHHHhC-CeEEEEEEchH--------hhHHHHHHcCCChhhCCEEEEEeccc
Confidence            68899999999999998883211   23444444 56777777665        356799999998  999999999755


Q ss_pred             CceEEEEeCCCChHHHHHHHH
Q 036413          224 GEKMRKWCGMVDPVSLLEDLL  244 (346)
Q Consensus       224 ge~l~~~~G~~~~~~~i~~L~  244 (346)
                      |.+.....|..+.+.+.+-|.
T Consensus        80 ~~k~~~~~~~~~~~~l~~fi~  100 (103)
T cd02982          80 GKKYLMPEEELTAESLEEFVE  100 (103)
T ss_pred             ccccCCCccccCHHHHHHHHH
Confidence            766655555556655444443

Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w

>PRK13703 conjugal pilus assembly protein TraF; Provisional

Probab=96.88  E-value=0.0065  Score=57.41  Aligned_cols=98  Identities=11%  Similarity=0.112  Sum_probs=78.0

Q ss_pred             CcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChH------HHHHHhhcCCCCCceEEEE
Q 036413          146 NKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSE------CRKVCGYYKLDSLPVVLVI  219 (346)
Q Consensus       146 ~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~e------g~~~~~~y~~~~~P~i~ii  219 (346)
                      ++|=||++....|.-|+.+      .+.|+.|-+.-+|-...+++|.   .-.++      ....+..+++..+|.+.+|
T Consensus       143 ~~~GL~fFy~s~Cp~C~~~------aPil~~fa~~yg~~v~~VS~DG---~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv  213 (248)
T PRK13703        143 EHYGLMFFYRGQDPIDGQL------AQVINDFRDTYGLSVIPVSVDG---VINPLLPDSRTDQGQAQRLGVKYFPALMLV  213 (248)
T ss_pred             hcceEEEEECCCCchhHHH------HHHHHHHHHHhCCeEEEEecCC---CCCCCCCCCccChhHHHhcCCcccceEEEE
Confidence            4699999999999999999      5888888875688888888872   00010      1123357888899999999


Q ss_pred             eCCCCceEEEEeCCCChHHHHHHHHHHHHcCCc
Q 036413          220 DPITGEKMRKWCGMVDPVSLLEDLLSFMESGPR  252 (346)
Q Consensus       220 dp~tge~l~~~~G~~~~~~~i~~L~~fl~~~~~  252 (346)
                      +|.|++..-+-.|.++.++|.+++......+..
T Consensus       214 ~~~t~~~~pv~~G~iS~deL~~Ri~~v~t~~~~  246 (248)
T PRK13703        214 DPKSGSVRPLSYGFITQDDLAKRFLNVSTDFKP  246 (248)
T ss_pred             ECCCCcEEEEeeccCCHHHHHHHHHHHHhccCC
Confidence            999999888889999999999999988877643

>PTZ00102 disulphide isomerase; Provisional

Probab=96.87  E-value=0.0036  Score=63.47  Aligned_cols=99  Identities=13%  Similarity=0.242  Sum_probs=71.7

Q ss_pred             ccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhc--cCcEEEEEeecCCCCCCCChHHHHHHhhcC
Q 036413          132 NGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIR--ASNFIFWQVYDDDDDDDDDSECRKVCGYYK  209 (346)
Q Consensus       132 ~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~--~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~  209 (346)
                      ..+|++++    ++++.+||+++++||..|+.|.... .  .+.+.++  ..++.|..++.+      .  ...++..|+
T Consensus        39 ~~~f~~~i----~~~~~~lv~f~a~wC~~Ck~~~p~~-~--~~a~~~~~~~~~i~~~~vd~~------~--~~~l~~~~~  103 (477)
T PTZ00102         39 DSTFDKFI----TENEIVLVKFYAPWCGHCKRLAPEY-K--KAAKMLKEKKSEIVLASVDAT------E--EMELAQEFG  103 (477)
T ss_pred             hhhHHHHH----hcCCcEEEEEECCCCHHHHHhhHHH-H--HHHHHHHhcCCcEEEEEEECC------C--CHHHHHhcC
Confidence            44566654    5578999999999999999986543 1  2233333  135788887766      2  357899999


Q ss_pred             CCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHH
Q 036413          210 LDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFME  248 (346)
Q Consensus       210 ~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~  248 (346)
                      +..||++.++..  |..+ ...|..+++.+++-|.+.+.
T Consensus       104 i~~~Pt~~~~~~--g~~~-~y~g~~~~~~l~~~l~~~~~  139 (477)
T PTZ00102        104 VRGYPTIKFFNK--GNPV-NYSGGRTADGIVSWIKKLTG  139 (477)
T ss_pred             CCcccEEEEEEC--CceE-EecCCCCHHHHHHHHHHhhC
Confidence            999999999984  5555 77898888888877777653

>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic

Probab=96.82  E-value=0.0046  Score=61.96  Aligned_cols=98  Identities=13%  Similarity=0.266  Sum_probs=70.8

Q ss_pred             cCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhcc--CcEEEEEeecCCCCCCCChHHHHHHhhcCC
Q 036413          133 GSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRA--SNFIFWQVYDDDDDDDDDSECRKVCGYYKL  210 (346)
Q Consensus       133 gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~--~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~  210 (346)
                      .+|++++    +++|.++|+++++||..|+.+....   ..+.+.+++  .++.|..++.+      .  ...++..|++
T Consensus         9 ~~~~~~i----~~~~~~~v~f~a~wC~~c~~~~~~~---~~~a~~~~~~~~~v~~~~vd~~------~--~~~l~~~~~i   73 (462)
T TIGR01130         9 DNFDDFI----KSHEFVLVEFYAPWCGHCKSLAPEY---EKAADELKKKGPPIKLAKVDAT------E--EKDLAQKYGV   73 (462)
T ss_pred             HHHHHHH----hcCCCEEEEEECCCCHHHHhhhHHH---HHHHHHHhhcCCceEEEEEECC------C--cHHHHHhCCC
Confidence            4455554    4678999999999999999985432   234444431  34788888776      2  2578999999


Q ss_pred             CCCceEEEEeCCCCce-EEEEeCCCChHHHHHHHHHHH
Q 036413          211 DSLPVVLVIDPITGEK-MRKWCGMVDPVSLLEDLLSFM  247 (346)
Q Consensus       211 ~~~P~i~iidp~tge~-l~~~~G~~~~~~~i~~L~~fl  247 (346)
                      ..||++.++.  .|+. +....|..+.+.+.+-+.+.+
T Consensus        74 ~~~Pt~~~~~--~g~~~~~~~~g~~~~~~l~~~i~~~~  109 (462)
T TIGR01130        74 SGYPTLKIFR--NGEDSVSDYNGPRDADGIVKYMKKQS  109 (462)
T ss_pred             ccccEEEEEe--CCccceeEecCCCCHHHHHHHHHHhc
Confidence            9999999996  4666 677789888777766666554

Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).

>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library

Probab=96.80  E-value=0.0078  Score=52.75  Aligned_cols=83  Identities=12%  Similarity=0.171  Sum_probs=61.5

Q ss_pred             ccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhc---cCcEEEEEeecCCCCCCCChHHHHHHhhc
Q 036413          132 NGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIR---ASNFIFWQVYDDDDDDDDDSECRKVCGYY  208 (346)
Q Consensus       132 ~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~---~~nFVfw~~~~~~~~~~~~~eg~~~~~~y  208 (346)
                      ..+|++.+..  ..++.++|+++++||..|+.+.      +.+.++.+   ..++.|..++.++     .   ..+++.|
T Consensus        35 ~~~f~~~l~~--~~~~~vvV~Fya~wC~~Ck~l~------p~l~~la~~~~~~~v~f~~VDvd~-----~---~~la~~~   98 (152)
T cd02962          35 PKTLEEELER--DKRVTWLVEFFTTWSPECVNFA------PVFAELSLKYNNNNLKFGKIDIGR-----F---PNVAEKF   98 (152)
T ss_pred             HHHHHHHHHh--cCCCEEEEEEECCCCHHHHHHH------HHHHHHHHHcccCCeEEEEEECCC-----C---HHHHHHc
Confidence            3446655433  3578999999999999999983      44555543   1358999999882     2   3678888


Q ss_pred             CCCC------CceEEEEeCCCCceEEEEeC
Q 036413          209 KLDS------LPVVLVIDPITGEKMRKWCG  232 (346)
Q Consensus       209 ~~~~------~P~i~iidp~tge~l~~~~G  232 (346)
                      ++.+      +|++.+..  .|+.+.+..|
T Consensus        99 ~V~~~~~v~~~PT~ilf~--~Gk~v~r~~G  126 (152)
T cd02962          99 RVSTSPLSKQLPTIILFQ--GGKEVARRPY  126 (152)
T ss_pred             CceecCCcCCCCEEEEEE--CCEEEEEEec
Confidence            8877      99999987  6898888775

It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.

>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1

Probab=96.78  E-value=0.0053  Score=51.68  Aligned_cols=74  Identities=14%  Similarity=0.105  Sum_probs=53.5

Q ss_pred             cCcEEEEEecC-------CCCccccccccccCCCHHHHHHhc--cCcEEEEEeecCCCCCCCChHHHHHHhhcCCC-CCc
Q 036413          145 ENKWLLVNLQS-------PKEFTSHTLNRDTWADEAVSQTIR--ASNFIFWQVYDDDDDDDDDSECRKVCGYYKLD-SLP  214 (346)
Q Consensus       145 ~~K~LlV~l~~-------~~~f~c~~lnRdvw~~~~V~~~i~--~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~-~~P  214 (346)
                      .+|+++|++.+       +||.+|+.+      .+.|.++..  +.+..|+.++++... .-......+...|++. ..|
T Consensus        20 ~~~~vvV~F~A~~~~~~~~WC~pCr~~------~P~l~~l~~~~~~~v~fv~Vdvd~~~-~w~d~~~~~~~~~~I~~~iP   92 (119)
T cd02952          20 EGKPIFILFYGDKDPDGQSWCPDCVKA------EPVVREALKAAPEDCVFIYCDVGDRP-YWRDPNNPFRTDPKLTTGVP   92 (119)
T ss_pred             CCCeEEEEEEccCCCCCCCCCHhHHhh------chhHHHHHHHCCCCCEEEEEEcCCcc-cccCcchhhHhccCcccCCC
Confidence            57899999999       999999988      456666665  136889999987200 0001246788899998 999


Q ss_pred             eEEEEeCCCCceE
Q 036413          215 VVLVIDPITGEKM  227 (346)
Q Consensus       215 ~i~iidp~tge~l  227 (346)
                      ++.++.  +|+++
T Consensus        93 T~~~~~--~~~~l  103 (119)
T cd02952          93 TLLRWK--TPQRL  103 (119)
T ss_pred             EEEEEc--CCcee
Confidence            999995  56544

TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.

>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO

Probab=96.73  E-value=0.018  Score=47.86  Aligned_cols=102  Identities=12%  Similarity=0.085  Sum_probs=73.9

Q ss_pred             HHHHhhcCCCcccccccCHHHHHHHhhhcCcEEEEEecCCC--CccccccccccCCCHHHHHHhc--cCcEEEEEeecCC
Q 036413          117 NNLASLYRPPVDLMFNGSFEKAKDVGSDENKWLLVNLQSPK--EFTSHTLNRDTWADEAVSQTIR--ASNFIFWQVYDDD  192 (346)
Q Consensus       117 ~~l~~lf~PP~~l~~~gsf~~A~~~Ak~~~K~LlV~l~~~~--~f~c~~lnRdvw~~~~V~~~i~--~~nFVfw~~~~~~  192 (346)
                      .+|..+-+=|-  .-..+|++-.    +.+..++|.++.+|  |.+|..+      .+.+.++.+  ++...|+.++.+ 
T Consensus         4 ~~~~~~~~~~~--~~~~~~~~~~----~~~~~~v~~f~~~~~~cp~c~~i------~P~leela~e~~~~v~f~kVdid-   70 (111)
T cd02965           4 ARLQTRHGWPR--VDAATLDDWL----AAGGDLVLLLAGDPVRFPEVLDV------AVVLPELLKAFPGRFRAAVVGRA-   70 (111)
T ss_pred             HHHHHhcCCcc--cccccHHHHH----hCCCCEEEEecCCcccCcchhhh------HhHHHHHHHHCCCcEEEEEEECC-
Confidence            34555444332  3466788555    56677788888885  9999888      466666665  134667788777 


Q ss_pred             CCCCCChHHHHHHhhcCCCCCceEEEEeCCCCceEEEEeCCCChHHHH
Q 036413          193 DDDDDDSECRKVCGYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLL  240 (346)
Q Consensus       193 ~~~~~~~eg~~~~~~y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i  240 (346)
                           ..  ..++..|++.+.|+++++-  .|+.+....|..+-+++.
T Consensus        71 -----~~--~~la~~f~V~sIPTli~fk--dGk~v~~~~G~~~~~e~~  109 (111)
T cd02965          71 -----DE--QALAARFGVLRTPALLFFR--DGRYVGVLAGIRDWDEYV  109 (111)
T ss_pred             -----CC--HHHHHHcCCCcCCEEEEEE--CCEEEEEEeCccCHHHHh
Confidence                 33  3899999999999999998  599999999988877664

They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=96.58  E-value=0.016  Score=65.22  Aligned_cols=101  Identities=12%  Similarity=0.086  Sum_probs=72.4

Q ss_pred             cCcEEEEEecCCCCccccccccccCCCHHHHHHhc---cCcEEEEEeecCCCCCCCCh-------------------HHH
Q 036413          145 ENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIR---ASNFIFWQVYDDDDDDDDDS-------------------ECR  202 (346)
Q Consensus       145 ~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~---~~nFVfw~~~~~~~~~~~~~-------------------eg~  202 (346)
                      .+|++|||+-.+||.+|+..      .|.+.++-+   +.+|+++.+.....|.+++.                   ...
T Consensus       419 kGK~vll~FWAsWC~pC~~e------~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~  492 (1057)
T PLN02919        419 KGKVVILDFWTYCCINCMHV------LPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDM  492 (1057)
T ss_pred             CCCEEEEEEECCcChhHHhH------hHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCch
Confidence            58999999999999999875      355544443   24588888853211111111                   122


Q ss_pred             HHHhhcCCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHHcCCc
Q 036413          203 KVCGYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMESGPR  252 (346)
Q Consensus       203 ~~~~~y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~~~~~  252 (346)
                      .+...|++..+|++.|||+ .|+.+.++.|....+.+.+.|...+..+..
T Consensus       493 ~~~~~~~V~~iPt~ilid~-~G~iv~~~~G~~~~~~l~~~l~~~l~~~~~  541 (1057)
T PLN02919        493 YLWRELGVSSWPTFAVVSP-NGKLIAQLSGEGHRKDLDDLVEAALQYYGE  541 (1057)
T ss_pred             HHHHhcCCCccceEEEECC-CCeEEEEEecccCHHHHHHHHHHHHHhhcc
Confidence            4667788999999999997 599999999988888888888887776643

>PF13728 TraF: F plasmid transfer operon protein

Probab=96.55  E-value=0.015  Score=53.81  Aligned_cols=93  Identities=12%  Similarity=0.035  Sum_probs=71.8

Q ss_pred             cCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCC---ChHHHHHHhhcCCCCCceEEEEeC
Q 036413          145 ENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDD---DSECRKVCGYYKLDSLPVVLVIDP  221 (346)
Q Consensus       145 ~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~---~~eg~~~~~~y~~~~~P~i~iidp  221 (346)
                      .++|=||++...+|.-|+.+      .+.|+.+-++-+|-...+++|.---..   .......+..+++...|.+.+|+|
T Consensus       119 a~~~gL~~F~~~~C~~C~~~------~pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~  192 (215)
T PF13728_consen  119 AQKYGLFFFYRSDCPYCQQQ------APILQQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNP  192 (215)
T ss_pred             hhCeEEEEEEcCCCchhHHH------HHHHHHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEEC
Confidence            46999999999999999998      577777777568888888777200000   001244677889999999999999


Q ss_pred             CCCceEEEEeCCCChHHHHHHH
Q 036413          222 ITGEKMRKWCGMVDPVSLLEDL  243 (346)
Q Consensus       222 ~tge~l~~~~G~~~~~~~i~~L  243 (346)
                      .|++..-+-.|.++.++|++++
T Consensus       193 ~~~~~~pv~~G~~s~~~L~~ri  214 (215)
T PF13728_consen  193 NTKKWYPVSQGFMSLDELEDRI  214 (215)
T ss_pred             CCCeEEEEeeecCCHHHHHHhh
Confidence            8888888889999999998875

>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional

Probab=96.51  E-value=0.011  Score=61.56  Aligned_cols=93  Identities=11%  Similarity=0.016  Sum_probs=61.7

Q ss_pred             cCcEEEEEecCCCCccccccccccCCCHHHHHHhc---cCcEEEEEeecCCCCCCC--------------------ChHH
Q 036413          145 ENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIR---ASNFIFWQVYDDDDDDDD--------------------DSEC  201 (346)
Q Consensus       145 ~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~---~~nFVfw~~~~~~~~~~~--------------------~~eg  201 (346)
                      ++|++|||+-.+||..|+..-      +.+.++.+   ..++.+..+..+..+.++                    ....
T Consensus        55 kGKpVvV~FWATWCppCk~em------P~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~  128 (521)
T PRK14018         55 KDKPTLIKFWASWCPLCLSEL------GETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNG  128 (521)
T ss_pred             CCCEEEEEEEcCCCHHHHHHH------HHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceecccc
Confidence            689999999999999998862      33333322   023444433321000000                    0113


Q ss_pred             HHHHhhcCCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHH
Q 036413          202 RKVCGYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLL  244 (346)
Q Consensus       202 ~~~~~~y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~  244 (346)
                      ..+++.|++..+|+++|||+ .|+.+....|.++.+++.+.|.
T Consensus       129 ~~lak~fgV~giPTt~IIDk-dGkIV~~~~G~~~~eeL~a~Ie  170 (521)
T PRK14018        129 GTLAQSLNISVYPSWAIIGK-DGDVQRIVKGSISEAQALALIR  170 (521)
T ss_pred             HHHHHHcCCCCcCeEEEEcC-CCeEEEEEeCCCCHHHHHHHHH
Confidence            46778899999999999997 6999999999988877666555

>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX

Probab=96.44  E-value=0.011  Score=49.60  Aligned_cols=86  Identities=15%  Similarity=0.226  Sum_probs=54.5

Q ss_pred             HHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHh---ccC--cEEEEEeecCCCCC--------C-------
Q 036413          137 KAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTI---RAS--NFIFWQVYDDDDDD--------D-------  196 (346)
Q Consensus       137 ~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i---~~~--nFVfw~~~~~~~~~--------~-------  196 (346)
                      +-+..+.-++|.+||++.++||..|+.+-      +.+.++.   +++  ++.+..++.+....        .       
T Consensus         8 ~~v~l~~~~Gk~vll~F~atwC~~C~~~~------p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~   81 (132)
T cd02964           8 GVVPVSALEGKTVGLYFSASWCPPCRAFT------PKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVP   81 (132)
T ss_pred             ccccHHHhCCCEEEEEEECCCCchHHHHH------HHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeec
Confidence            33444555689999999999999998763      3343332   212  46565565552000        0       


Q ss_pred             -CC-hHHHHHHhhcCCCCCceEEEEeCCCCceEEE
Q 036413          197 -DD-SECRKVCGYYKLDSLPVVLVIDPITGEKMRK  229 (346)
Q Consensus       197 -~~-~eg~~~~~~y~~~~~P~i~iidp~tge~l~~  229 (346)
                       .+ .....+.+.|++..+|++.|||+ +|+.+..
T Consensus        82 ~~d~~~~~~~~~~~~v~~iPt~~lid~-~G~iv~~  115 (132)
T cd02964          82 FEDEELRELLEKQFKVEGIPTLVVLKP-DGDVVTT  115 (132)
T ss_pred             cCcHHHHHHHHHHcCCCCCCEEEEECC-CCCEEch
Confidence             01 12345677899999999999996 5876644

Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.

>PTZ00102 disulphide isomerase; Provisional

Probab=96.43  E-value=0.0071  Score=61.35  Aligned_cols=104  Identities=11%  Similarity=0.159  Sum_probs=70.9

Q ss_pred             ccccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhc-cCcEEEEEeecCCCCCCCChHHHHHHhhc
Q 036413          130 MFNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIR-ASNFIFWQVYDDDDDDDDDSECRKVCGYY  208 (346)
Q Consensus       130 ~~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~-~~nFVfw~~~~~~~~~~~~~eg~~~~~~y  208 (346)
                      +-..+|+++.   .+.+|.+||++.++||..|+.|. .+|.  .+.+..+ ..++++..++.+      ..  ...+..|
T Consensus       362 l~~~~f~~~v---~~~~k~vlv~f~a~wC~~C~~~~-p~~~--~~a~~~~~~~~v~~~~id~~------~~--~~~~~~~  427 (477)
T PTZ00102        362 VVGNTFEEIV---FKSDKDVLLEIYAPWCGHCKNLE-PVYN--ELGEKYKDNDSIIVAKMNGT------AN--ETPLEEF  427 (477)
T ss_pred             ecccchHHHH---hcCCCCEEEEEECCCCHHHHHHH-HHHH--HHHHHhccCCcEEEEEEECC------CC--ccchhcC
Confidence            3355677654   46689999999999999999883 2333  2222233 136778877766      22  2356788


Q ss_pred             CCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHH
Q 036413          209 KLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFME  248 (346)
Q Consensus       209 ~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~  248 (346)
                      ++..+|++.++.+ .++....+.|..+.+.+.+.|.+...
T Consensus       428 ~v~~~Pt~~~~~~-~~~~~~~~~G~~~~~~l~~~i~~~~~  466 (477)
T PTZ00102        428 SWSAFPTILFVKA-GERTPIPYEGERTVEGFKEFVNKHAT  466 (477)
T ss_pred             CCcccCeEEEEEC-CCcceeEecCcCCHHHHHHHHHHcCC
Confidence            9999999999985 34444567898888766666665543

>PLN02309 5'-adenylylsulfate reductase

Probab=96.43  E-value=0.018  Score=58.95  Aligned_cols=113  Identities=15%  Similarity=0.177  Sum_probs=71.2

Q ss_pred             HhhcCCCccc-ccccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCC
Q 036413          120 ASLYRPPVDL-MFNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDD  198 (346)
Q Consensus       120 ~~lf~PP~~l-~~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~  198 (346)
                      .++|.-+..+ +-..+|++.+. .+..+|.+||+++.+||..|+.|... |.  .+.+-++..++.|..++.+      .
T Consensus       339 ~dl~~~~~Vv~Lt~~nfe~ll~-~~~~~k~vlV~FyApWC~~Cq~m~p~-~e--~LA~~~~~~~V~f~kVD~d------~  408 (457)
T PLN02309        339 ADIFNSQNVVALSRAGIENLLK-LENRKEPWLVVLYAPWCPFCQAMEAS-YE--ELAEKLAGSGVKVAKFRAD------G  408 (457)
T ss_pred             ccccCCCCcEECCHHHHHHHHH-hhcCCCeEEEEEECCCChHHHHHHHH-HH--HHHHHhccCCeEEEEEECC------C
Confidence            5666433322 22334444333 35789999999999999999999543 22  3444443156999988877      2


Q ss_pred             hHHHHHHh-hcCCCCCceEEEEeCCCCceEEEEe-CCCChHHHHHHHH
Q 036413          199 SECRKVCG-YYKLDSLPVVLVIDPITGEKMRKWC-GMVDPVSLLEDLL  244 (346)
Q Consensus       199 ~eg~~~~~-~y~~~~~P~i~iidp~tge~l~~~~-G~~~~~~~i~~L~  244 (346)
                      .+ ..++. .|++..||+|.+..+.+. .-.... |.-+.+.|++-+.
T Consensus       409 ~~-~~la~~~~~I~~~PTil~f~~g~~-~~v~Y~~~~R~~~~L~~fv~  454 (457)
T PLN02309        409 DQ-KEFAKQELQLGSFPTILLFPKNSS-RPIKYPSEKRDVDSLLSFVN  454 (457)
T ss_pred             cc-hHHHHhhCCCceeeEEEEEeCCCC-CeeecCCCCcCHHHHHHHHH
Confidence            22 35564 699999999999986332 333344 3567766655444

>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []

Probab=96.42  E-value=0.0067  Score=40.24  Aligned_cols=35  Identities=26%  Similarity=0.392  Sum_probs=31.0

Q ss_pred             HHHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHH
Q 036413           10 RKRVISSFLEITNGQTEETALKILNATNWNLDKAILR   46 (346)
Q Consensus        10 ~~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~   46 (346)
                      .+++|.+.+++  |-+.+.|+..|.+++||++.|++.
T Consensus         2 ~~~~v~~L~~m--Gf~~~~~~~AL~~~~~nve~A~~~   36 (37)
T PF00627_consen    2 DEEKVQQLMEM--GFSREQAREALRACNGNVERAVDW   36 (37)
T ss_dssp             HHHHHHHHHHH--TS-HHHHHHHHHHTTTSHHHHHHH
T ss_pred             CHHHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHh
Confidence            36789999999  899999999999999999999973

The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....

>cd00194 UBA Ubiquitin Associated domain

Probab=96.38  E-value=0.0082  Score=39.71  Aligned_cols=36  Identities=33%  Similarity=0.443  Sum_probs=32.4

Q ss_pred             HHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHh
Q 036413           11 KRVISSFLEITNGQTEETALKILNATNWNLDKAILRFN   48 (346)
Q Consensus        11 ~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~   48 (346)
                      ++.|.+++++  |-+.+.|+..|.+++||++.|++..|
T Consensus         2 ~~~v~~L~~m--Gf~~~~~~~AL~~~~~d~~~A~~~L~   37 (38)
T cd00194           2 EEKLEQLLEM--GFSREEARKALRATNNNVERAVEWLL   37 (38)
T ss_pred             HHHHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHHh
Confidence            4678999998  78899999999999999999998765

The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.

>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors

Probab=96.35  E-value=0.0082  Score=52.29  Aligned_cols=79  Identities=18%  Similarity=0.307  Sum_probs=51.1

Q ss_pred             hcCcEEEEEecCCCCccccccccccCCCHHHHHHh---cc-------CcEEEEEeecCCCCCC-----------------
Q 036413          144 DENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTI---RA-------SNFIFWQVYDDDDDDD-----------------  196 (346)
Q Consensus       144 ~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i---~~-------~nFVfw~~~~~~~~~~-----------------  196 (346)
                      =++|+++||+-++||.+|..+.      +.+.++-   ++       ++|.+..++.+....+                 
T Consensus        23 ~kgk~vlL~FwAsWCppCr~e~------P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~   96 (146)
T cd03008          23 LENRVLLLFFGAVVSPQCQLFA------PKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPF   96 (146)
T ss_pred             hCCCEEEEEEECCCChhHHHHH------HHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecc
Confidence            3579999999999999998763      3333321   10       1355555554420000                 


Q ss_pred             CChHHHHHHhhcCCCCCceEEEEeCCCCceEEE
Q 036413          197 DDSECRKVCGYYKLDSLPVVLVIDPITGEKMRK  229 (346)
Q Consensus       197 ~~~eg~~~~~~y~~~~~P~i~iidp~tge~l~~  229 (346)
                      ....+..+...|++..+|+..|||| .|..+..
T Consensus        97 ~~~~~~~l~~~y~v~~iPt~vlId~-~G~Vv~~  128 (146)
T cd03008          97 EDEFRRELEAQFSVEELPTVVVLKP-DGDVLAA  128 (146)
T ss_pred             cchHHHHHHHHcCCCCCCEEEEECC-CCcEEee
Confidence            0222346778899999999999998 5888765

RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.

>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs

Probab=96.31  E-value=0.028  Score=49.23  Aligned_cols=104  Identities=15%  Similarity=0.192  Sum_probs=66.1

Q ss_pred             cCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCC---CCCChH------------------HHH
Q 036413          145 ENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDD---DDDDSE------------------CRK  203 (346)
Q Consensus       145 ~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~---~~~~~e------------------g~~  203 (346)
                      .+|++||++..++|..|...-..+  ++...+|=+ .++.|+.++.+...   .+...+                  ...
T Consensus        24 ~~k~~ll~f~~t~Cp~c~~~~~~l--~~l~~~~~~-~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~  100 (171)
T cd02969          24 DGKALVVMFICNHCPYVKAIEDRL--NRLAKEYGA-KGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQE  100 (171)
T ss_pred             CCCEEEEEEECCCCccHHHHHHHH--HHHHHHHhh-CCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchH
Confidence            679999999999999986432211  122222323 67888888776100   001111                  224


Q ss_pred             HHhhcCCCCCceEEEEeCCCCceEEEE------eC---CCChHHHHHHHHHHHHcCCc
Q 036413          204 VCGYYKLDSLPVVLVIDPITGEKMRKW------CG---MVDPVSLLEDLLSFMESGPR  252 (346)
Q Consensus       204 ~~~~y~~~~~P~i~iidp~tge~l~~~------~G---~~~~~~~i~~L~~fl~~~~~  252 (346)
                      ++..|++...|++.|||| +|+.+..+      .|   ..+.+++.+.|...+...+.
T Consensus       101 ~~~~~~v~~~P~~~lid~-~G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~  157 (171)
T cd02969         101 VAKAYGAACTPDFFLFDP-DGKLVYRGRIDDSRPGNDPPVTGRDLRAALDALLAGKPV  157 (171)
T ss_pred             HHHHcCCCcCCcEEEECC-CCeEEEeecccCCcccccccccHHHHHHHHHHHHcCCCC
Confidence            556777778899999997 68877653      11   24567888888888877654

Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.

>smart00165 UBA Ubiquitin associated domain

Probab=96.27  E-value=0.009  Score=39.32  Aligned_cols=36  Identities=36%  Similarity=0.455  Sum_probs=32.0

Q ss_pred             HHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHh
Q 036413           11 KRVISSFLEITNGQTEETALKILNATNWNLDKAILRFN   48 (346)
Q Consensus        11 ~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~   48 (346)
                      .+.|++++++  |-+.+.|+..|.+++||++.|++-.|
T Consensus         2 ~~~v~~L~~m--Gf~~~~a~~aL~~~~~d~~~A~~~L~   37 (37)
T smart00165        2 EEKIDQLLEM--GFSREEALKALRAANGNVERAAEYLL   37 (37)
T ss_pred             HHHHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHHC
Confidence            4678999999  89999999999999999999987543

Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.

>PTZ00062 glutaredoxin; Provisional

Probab=96.23  E-value=0.038  Score=50.78  Aligned_cols=91  Identities=12%  Similarity=0.129  Sum_probs=65.3

Q ss_pred             CHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhc-cCcEEEEEeecCCCCCCCChHHHHHHhhcCCCC
Q 036413          134 SFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIR-ASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDS  212 (346)
Q Consensus       134 sf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~-~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~  212 (346)
                      +.++-.+..+.....++++++++||.+|..|+      +.+.++.. -.++.|+.++.+                |.+..
T Consensus         5 ~~ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~------~vl~~l~~~~~~~~F~~V~~d----------------~~V~~   62 (204)
T PTZ00062          5 KKEEKDKLIESNTGKLVLYVKSSKEPEYEQLM------DVCNALVEDFPSLEFYVVNLA----------------DANNE   62 (204)
T ss_pred             CHHHHHHHHhcCCCcEEEEEeCCCCcchHHHH------HHHHHHHHHCCCcEEEEEccc----------------cCccc
Confidence            33444444444447789999999999999984      55555554 126788877433                99999


Q ss_pred             CceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHHc
Q 036413          213 LPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMES  249 (346)
Q Consensus       213 ~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~~  249 (346)
                      .|+++++.  .|+.+.++.|. +|.++.+.|......
T Consensus        63 vPtfv~~~--~g~~i~r~~G~-~~~~~~~~~~~~~~~   96 (204)
T PTZ00062         63 YGVFEFYQ--NSQLINSLEGC-NTSTLVSFIRGWAQK   96 (204)
T ss_pred             ceEEEEEE--CCEEEeeeeCC-CHHHHHHHHHHHcCC
Confidence            99999997  69999999984 577777777665543

>TIGR02187 GlrX_arch Glutaredoxin-like domain protein

Probab=96.09  E-value=0.044  Score=50.22  Aligned_cols=90  Identities=8%  Similarity=0.110  Sum_probs=62.9

Q ss_pred             cCcEEEEEec--CCCCccccccccccCCCHHHHHHhccC--cEEEEEeecCCCCCCCChHHHHHHhhcCCCCCceEEEEe
Q 036413          145 ENKWLLVNLQ--SPKEFTSHTLNRDTWADEAVSQTIRAS--NFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVLVID  220 (346)
Q Consensus       145 ~~K~LlV~l~--~~~~f~c~~lnRdvw~~~~V~~~i~~~--nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~i~iid  220 (346)
                      .++-|+++..  .+||..|+.+.      +.+.++.. .  +.-+.-++++      ..+...++..|++..+|+++++.
T Consensus        19 ~~~~i~~f~~~~a~wC~~C~~~~------p~l~~la~-~~~~~~i~~v~vd------~~~~~~l~~~~~V~~~Pt~~~f~   85 (215)
T TIGR02187        19 NPVEIVVFTDNDKEGCQYCKETE------QLLEELSE-VSPKLKLEIYDFD------TPEDKEEAEKYGVERVPTTIILE   85 (215)
T ss_pred             CCeEEEEEcCCCCCCCCchHHHH------HHHHHHHh-hCCCceEEEEecC------CcccHHHHHHcCCCccCEEEEEe
Confidence            4455666554  38999999983      45555543 2  2223445566      55678999999999999999998


Q ss_pred             CCCCceEE-EEeCCCChHHHHHHHHHHHHc
Q 036413          221 PITGEKMR-KWCGMVDPVSLLEDLLSFMES  249 (346)
Q Consensus       221 p~tge~l~-~~~G~~~~~~~i~~L~~fl~~  249 (346)
                        .|+.+. ++.|..+.++|.+.|...+..
T Consensus        86 --~g~~~~~~~~G~~~~~~l~~~i~~~~~~  113 (215)
T TIGR02187        86 --EGKDGGIRYTGIPAGYEFAALIEDIVRV  113 (215)
T ss_pred             --CCeeeEEEEeecCCHHHHHHHHHHHHHh
Confidence              377764 788988887777777666543

This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.

>PRK13728 conjugal transfer protein TrbB; Provisional

Probab=96.07  E-value=0.043  Score=49.52  Aligned_cols=92  Identities=11%  Similarity=0.155  Sum_probs=68.2

Q ss_pred             EEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCC------ChHHHHHHhhcCC--CCCceEEEEeC
Q 036413          150 LVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDD------DSECRKVCGYYKL--DSLPVVLVIDP  221 (346)
Q Consensus       150 lV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~------~~eg~~~~~~y~~--~~~P~i~iidp  221 (346)
                      ||++-.+||..|+..      .+.++++-++-.|.++.+++++ +.+.      ...+..+...|+.  ..+|+..|||+
T Consensus        73 lV~FwaswCp~C~~e------~P~L~~l~~~~g~~Vi~Vs~D~-~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~  145 (181)
T PRK13728         73 VVLFMQGHCPYCHQF------DPVLKQLAQQYGFSVFPYTLDG-QGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNV  145 (181)
T ss_pred             EEEEECCCCHhHHHH------HHHHHHHHHHcCCEEEEEEeCC-CCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeC
Confidence            777888999999887      5777787773379999998873 1000      1123446677884  58999999997


Q ss_pred             CCCceE-EEEeCCCChHHHHHHHHHHHHc
Q 036413          222 ITGEKM-RKWCGMVDPVSLLEDLLSFMES  249 (346)
Q Consensus       222 ~tge~l-~~~~G~~~~~~~i~~L~~fl~~  249 (346)
                       .|... .+..|.++.+++.+.+.+.+..
T Consensus       146 -~G~i~~~~~~G~~~~~~L~~~I~~ll~~  173 (181)
T PRK13728        146 -NTLEALPLLQGATDAAGFMARMDTVLQM  173 (181)
T ss_pred             -CCcEEEEEEECCCCHHHHHHHHHHHHhh
Confidence             47764 5789999999888888877654

>PLN02412 probable glutathione peroxidase

Probab=96.04  E-value=0.025  Score=49.83  Aligned_cols=101  Identities=11%  Similarity=0.179  Sum_probs=61.4

Q ss_pred             cCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCC---CCCChHHHHH-HhhcC-----------
Q 036413          145 ENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDD---DDDDSECRKV-CGYYK-----------  209 (346)
Q Consensus       145 ~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~---~~~~~eg~~~-~~~y~-----------  209 (346)
                      .+|.+||++..+||.+|..-...+  ++.-.+|=. .+|.+++++.+...   .+...+-.++ +..|+           
T Consensus        28 ~gk~vlv~f~a~~C~~c~~e~~~l--~~l~~~~~~-~g~~vvgv~~~~~~~~~~~~~~~~~~~~~~~~~~~fpvl~~~d~  104 (167)
T PLN02412         28 KGKVLLIVNVASKCGLTDSNYKEL--NVLYEKYKE-QGFEILAFPCNQFLGQEPGSNEEIQQTVCTRFKAEFPIFDKVDV  104 (167)
T ss_pred             CCCEEEEEEeCCCCCChHHHHHHH--HHHHHHHhh-CCcEEEEecccccccCCCCCHHHHHHHHHHccCCCCceEeEEee
Confidence            469999999999999997421111  222223333 56777777654100   0001121121 22211           


Q ss_pred             -----------------------CCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHHc
Q 036413          210 -----------------------LDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMES  249 (346)
Q Consensus       210 -----------------------~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~~  249 (346)
                                             +...|+..|||+ .|+.+.+|.|.++++++...+...|..
T Consensus       105 ~g~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~-~G~vv~~~~g~~~~~~l~~~i~~~l~~  166 (167)
T PLN02412        105 NGKNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSK-EGKVVQRYAPTTSPLKIEKDIQNLLGQ  166 (167)
T ss_pred             CCCCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECC-CCcEEEEECCCCCHHHHHHHHHHHHhh
Confidence                                   222578899996 699999999999998888888877653

>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=95.99  E-value=0.038  Score=52.05  Aligned_cols=97  Identities=16%  Similarity=0.308  Sum_probs=77.1

Q ss_pred             HHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhc-cCcEEEEEeecCCCCCCCChHHHHHHhhcCCCCCceEE
Q 036413          139 KDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIR-ASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVL  217 (346)
Q Consensus       139 ~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~-~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~i~  217 (346)
                      ...++.-+|+++|++...||.+|+..      .|.+.++-+ =-.+||..+|++        +.+..+..|++...|+..
T Consensus        14 ~~ls~ag~k~v~Vdfta~wCGPCk~I------aP~Fs~lankYp~aVFlkVdVd--------~c~~taa~~gV~amPTFi   79 (288)
T KOG0908|consen   14 RELSAAGGKLVVVDFTASWCGPCKRI------APIFSDLANKYPGAVFLKVDVD--------ECRGTAATNGVNAMPTFI   79 (288)
T ss_pred             HhhhccCceEEEEEEEecccchHHhh------hhHHHHhhhhCcccEEEEEeHH--------HhhchhhhcCcccCceEE
Confidence            35567788999999999999999987      455555555 125799999888        567788999999999988


Q ss_pred             EEeCCCCceEEEEeCCCChHHHHHHHHHHHHcCCc
Q 036413          218 VIDPITGEKMRKWCGMVDPVSLLEDLLSFMESGPR  252 (346)
Q Consensus       218 iidp~tge~l~~~~G~~~~~~~i~~L~~fl~~~~~  252 (346)
                      +.-  +|.++.+++|. ++..|-+++.++++.-..
T Consensus        80 ff~--ng~kid~~qGA-d~~gLe~kv~~~~stsaa  111 (288)
T KOG0908|consen   80 FFR--NGVKIDQIQGA-DASGLEEKVAKYASTSAA  111 (288)
T ss_pred             EEe--cCeEeeeecCC-CHHHHHHHHHHHhccCcc
Confidence            775  68999999994 777788888888765443

>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A

Probab=95.98  E-value=0.02  Score=44.77  Aligned_cols=72  Identities=17%  Similarity=0.308  Sum_probs=42.3

Q ss_pred             CcEEEEEecCCCCccccccccccCCCHHHHHHhc----cCcEEEEEeecCCCCCCC------------------ChHHHH
Q 036413          146 NKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIR----ASNFIFWQVYDDDDDDDD------------------DSECRK  203 (346)
Q Consensus       146 ~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~----~~nFVfw~~~~~~~~~~~------------------~~eg~~  203 (346)
                      ||.++|++-++||..|....      +.+.++.+    ..++.+..++.++ +.++                  ...-..
T Consensus         1 gK~~ll~fwa~~c~~c~~~~------~~l~~l~~~~~~~~~v~~v~Vs~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~   73 (95)
T PF13905_consen    1 GKPVLLYFWASWCPPCKKEL------PKLKELYKKYKKKDDVEFVFVSLDE-DEEEWKKFLKKNNFPWYNVPFDDDNNSE   73 (95)
T ss_dssp             TSEEEEEEE-TTSHHHHHHH------HHHHHHHHHHTTTTTEEEEEEE-SS-SHHHHHHHHHTCTTSSEEEETTTHHHHH
T ss_pred             CCEEEEEEECCCCHHHHHHH------HHHHHHHHHhCCCCCEEEEEEEeCC-CHHHHHHHHHhcCCCceEEeeCcchHHH
Confidence            57778888877777776653      23333322    1455555544442 0000                  334567


Q ss_pred             HHhhcCCCCCceEEEEeCCCCc
Q 036413          204 VCGYYKLDSLPVVLVIDPITGE  225 (346)
Q Consensus       204 ~~~~y~~~~~P~i~iidp~tge  225 (346)
                      +.+.|.+..+|++.|||| .|+
T Consensus        74 l~~~~~i~~iP~~~lld~-~G~   94 (95)
T PF13905_consen   74 LLKKYGINGIPTLVLLDP-DGK   94 (95)
T ss_dssp             HHHHTT-TSSSEEEEEET-TSB
T ss_pred             HHHHCCCCcCCEEEEECC-CCC
Confidence            888899999999999997 575

...

>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis

Probab=95.77  E-value=0.079  Score=48.14  Aligned_cols=89  Identities=18%  Similarity=0.368  Sum_probs=60.7

Q ss_pred             cCCCcccccccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccC--cEEEEEeecCCCCCCCChH
Q 036413          123 YRPPVDLMFNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRAS--NFIFWQVYDDDDDDDDDSE  200 (346)
Q Consensus       123 f~PP~~l~~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~--nFVfw~~~~~~~~~~~~~e  200 (346)
                      |+...++ ...+|.+....|. .++|++|+++.+||..|+.|+      +.+.++-. +  +..|..++++      .  
T Consensus        81 ~G~v~ei-s~~~f~~eV~~as-~~~~VVV~Fya~wc~~C~~m~------~~l~~LA~-k~~~vkFvkI~ad------~--  143 (192)
T cd02988          81 FGEVYEI-SKPDYVREVTEAS-KDTWVVVHLYKDGIPLCRLLN------QHLSELAR-KFPDTKFVKIIST------Q--  143 (192)
T ss_pred             CCeEEEe-CHHHHHHHHHhcC-CCCEEEEEEECCCCchHHHHH------HHHHHHHH-HCCCCEEEEEEhH------H--
Confidence            4443333 3445555544332 357999999999999999994      44555544 2  2456666655      2  


Q ss_pred             HHHHHhhcCCCCCceEEEEeCCCCceEEEEeCC
Q 036413          201 CRKVCGYYKLDSLPVVLVIDPITGEKMRKWCGM  233 (346)
Q Consensus       201 g~~~~~~y~~~~~P~i~iidp~tge~l~~~~G~  233 (346)
                         .+..|++...|+++|.-  .|+.+..+.|.
T Consensus       144 ---~~~~~~i~~lPTlliyk--~G~~v~~ivG~  171 (192)
T cd02988         144 ---CIPNYPDKNLPTILVYR--NGDIVKQFIGL  171 (192)
T ss_pred             ---hHhhCCCCCCCEEEEEE--CCEEEEEEeCc
Confidence               25789999999999997  69988888763

It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD

Probab=95.72  E-value=0.078  Score=47.68  Aligned_cols=96  Identities=17%  Similarity=0.251  Sum_probs=56.1

Q ss_pred             hcCcEEEEEecCCCCccccccccccCCCHHHHHHhcc--CcEEEEEeecCC------------CCCCCChHHHHHHhhcC
Q 036413          144 DENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRA--SNFIFWQVYDDD------------DDDDDDSECRKVCGYYK  209 (346)
Q Consensus       144 ~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~--~nFVfw~~~~~~------------~~~~~~~eg~~~~~~y~  209 (346)
                      ..+|.++|++-++||..|+..-      +.+.++.++  -++++..  .+.            ++-..-.....+...|+
T Consensus        72 ~~gk~vvl~F~atwCp~C~~~l------p~l~~~~~~~~~~vv~Is--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~  143 (189)
T TIGR02661        72 APGRPTLLMFTAPSCPVCDKLF------PIIKSIARAEETDVVMIS--DGTPAEHRRFLKDHELGGERYVVSAEIGMAFQ  143 (189)
T ss_pred             cCCCEEEEEEECCCChhHHHHH------HHHHHHHHhcCCcEEEEe--CCCHHHHHHHHHhcCCCcceeechhHHHHhcc
Confidence            3679999999999999998762      333333331  2344332  110            00000001235667788


Q ss_pred             CCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHHcC
Q 036413          210 LDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMESG  250 (346)
Q Consensus       210 ~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~~~  250 (346)
                      +...|+..|||+ .|+....  |.+...+-++.|.+.++.+
T Consensus       144 v~~~P~~~lID~-~G~I~~~--g~~~~~~~le~ll~~l~~~  181 (189)
T TIGR02661       144 VGKIPYGVLLDQ-DGKIRAK--GLTNTREHLESLLEADREG  181 (189)
T ss_pred             CCccceEEEECC-CCeEEEc--cCCCCHHHHHHHHHHHHcC
Confidence            889999999997 5876653  5544444566665555443

This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.

>PTZ00056 glutathione peroxidase; Provisional

Probab=95.68  E-value=0.093  Score=47.79  Aligned_cols=97  Identities=10%  Similarity=0.142  Sum_probs=62.9

Q ss_pred             cCcEEEEEecCCCCccccccccccCCCHHHHHHhc---cCcEEEEEeecCCC---CCCCChHHHHHHhhcCCCCCc----
Q 036413          145 ENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIR---ASNFIFWQVYDDDD---DDDDDSECRKVCGYYKLDSLP----  214 (346)
Q Consensus       145 ~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~---~~nFVfw~~~~~~~---~~~~~~eg~~~~~~y~~~~~P----  214 (346)
                      .+|.+||++-.+||..|..-.      +.+.++.+   +.++.+++++.+..   +.+...+..+++..+++ .||    
T Consensus        38 kGkvvlv~fwAswC~~C~~e~------p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~e~~~~f~~~~~~-~fpvl~d  110 (199)
T PTZ00056         38 KNKVLMITNSASKCGLTKKHV------DQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTKDIRKFNDKNKI-KYNFFEP  110 (199)
T ss_pred             CCCEEEEEEECCCCCChHHHH------HHHHHHHHHHhcCceEEEEecchhccCCCCCCHHHHHHHHHHcCC-Cceeeee
Confidence            589999999999999996421      23333322   25688888865310   00112346666655543 122    


Q ss_pred             ------------------------------------eEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHHc
Q 036413          215 ------------------------------------VVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMES  249 (346)
Q Consensus       215 ------------------------------------~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~~  249 (346)
                                                          +..|||+ .|+.+..+.|..+++++...|...+..
T Consensus       111 ~~v~g~~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~-~G~iv~~~~g~~~~~~l~~~I~~ll~~  180 (199)
T PTZ00056        111 IEVNGENTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNK-SGNVVAYFSPRTEPLELEKKIAELLGV  180 (199)
T ss_pred             eeccCCccCHHHHHHHHhCcccccccccCCccCCCCEEEEECC-CCcEEEEeCCCCCHHHHHHHHHHHHHH
Confidence                                                4678885 799999888988888887777777644

>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain

Probab=95.66  E-value=0.046  Score=45.39  Aligned_cols=81  Identities=15%  Similarity=0.139  Sum_probs=51.8

Q ss_pred             cCcEEEEEecCCCCccccccccccCCCHHHHHHhc---cCcEEEEEeecCCCCCCCChH-H------------------H
Q 036413          145 ENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIR---ASNFIFWQVYDDDDDDDDDSE-C------------------R  202 (346)
Q Consensus       145 ~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~---~~nFVfw~~~~~~~~~~~~~e-g------------------~  202 (346)
                      ++|+++|++.+++|..|....      +.+.++.+   +.++.++.++..+.+.+++.+ .                  .
T Consensus        22 ~gk~vvl~F~a~~C~~C~~~~------p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~   95 (126)
T cd03012          22 RGKVVLLDFWTYCCINCLHTL------PYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDY   95 (126)
T ss_pred             CCCEEEEEEECCCCccHHHHH------HHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCch
Confidence            579999999999999997652      33333332   256777777553111111111 1                  2


Q ss_pred             HHHhhcCCCCCceEEEEeCCCCceEEEEeC
Q 036413          203 KVCGYYKLDSLPVVLVIDPITGEKMRKWCG  232 (346)
Q Consensus       203 ~~~~~y~~~~~P~i~iidp~tge~l~~~~G  232 (346)
                      .+...|++..+|+..|||+ .|+.+..+.|
T Consensus        96 ~~~~~~~v~~~P~~~vid~-~G~v~~~~~G  124 (126)
T cd03012          96 ATWRAYGNQYWPALYLIDP-TGNVRHVHFG  124 (126)
T ss_pred             HHHHHhCCCcCCeEEEECC-CCcEEEEEec
Confidence            3445577778999999997 5988888776

Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.

>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides

Probab=95.61  E-value=0.061  Score=44.97  Aligned_cols=38  Identities=21%  Similarity=0.310  Sum_probs=27.4

Q ss_pred             HHHhhcCCCCC---------ceEEEEeCCCCceEEEEeCCCChHHHHH
Q 036413          203 KVCGYYKLDSL---------PVVLVIDPITGEKMRKWCGMVDPVSLLE  241 (346)
Q Consensus       203 ~~~~~y~~~~~---------P~i~iidp~tge~l~~~~G~~~~~~~i~  241 (346)
                      .++..|++...         |++.|||+ +|+....+.|......+-+
T Consensus        91 ~~~~~~gv~~~~~~~~~~~~p~~~lid~-~G~v~~~~~g~~~~~~~~~  137 (140)
T cd03017          91 KLAKAYGVWGEKKKKYMGIERSTFLIDP-DGKIVKVWRKVKPKGHAEE  137 (140)
T ss_pred             HHHHHhCCccccccccCCcceeEEEECC-CCEEEEEEecCCccchHHH
Confidence            45566666665         99999996 6999999999765444433

The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w

>PLN02399 phospholipid hydroperoxide glutathione peroxidase

Probab=95.44  E-value=0.039  Score=51.86  Aligned_cols=34  Identities=12%  Similarity=0.306  Sum_probs=29.2

Q ss_pred             CceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHH
Q 036413          213 LPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFM  247 (346)
Q Consensus       213 ~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl  247 (346)
                      .|+..|||+ .|+.+.++.|.++++++...|.+.|
T Consensus       201 ~PttfLIDk-~GkVv~~~~G~~~~~~le~~I~~lL  234 (236)
T PLN02399        201 NFEKFLVDK-NGKVVERYPPTTSPFQIEKDIQKLL  234 (236)
T ss_pred             CceEEEECC-CCcEEEEECCCCCHHHHHHHHHHHh
Confidence            588999996 6999999999999988888887766

>KOG2244 consensus Highly conserved protein containing a thioredoxin domain [General function prediction only]

Probab=95.42  E-value=0.022  Score=58.73  Aligned_cols=80  Identities=15%  Similarity=0.295  Sum_probs=67.2

Q ss_pred             HHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHH-HH----hhcCC
Q 036413          136 EKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRK-VC----GYYKL  210 (346)
Q Consensus       136 ~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~-~~----~~y~~  210 (346)
                      .+|.+.|+.++|.|++.+--..|..||+|...-|-|++..++++ +|||-..+|-++     .|+--+ |+    ..+.-
T Consensus       102 qeaf~kar~enkpifLsvgystchwchvmekesfeneet~~iln-enfv~ikVDREE-----RPDVDK~YM~Fv~assg~  175 (786)
T KOG2244|consen  102 QEAFNKARAENKPIFLSVGYSTCHWCHVMEKESFENEETGEILN-ENFVKIKVDREE-----RPDVDKLYMAFVVASSGG  175 (786)
T ss_pred             HHHHHHHHhcCCCEEEEcccccchheeeeecccccCHHHHHHHh-hhhhhhccChhh-----cCchHHHHHHHHHhccCC
Confidence            78999999999999999977889999999999999999999999 999998876664     555444 33    33444


Q ss_pred             CCCceEEEEeC
Q 036413          211 DSLPVVLVIDP  221 (346)
Q Consensus       211 ~~~P~i~iidp  221 (346)
                      ...|.-+.+.|
T Consensus       176 GGWPmsV~LTP  186 (786)
T KOG2244|consen  176 GGWPMSVFLTP  186 (786)
T ss_pred             CCCceeEEeCC
Confidence            67999999987

>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source

Probab=95.00  E-value=0.13  Score=41.40  Aligned_cols=73  Identities=15%  Similarity=0.173  Sum_probs=43.0

Q ss_pred             cCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHH-----------------hh
Q 036413          145 ENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVC-----------------GY  207 (346)
Q Consensus       145 ~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~-----------------~~  207 (346)
                      ++|+++|++.++||..|+.....+   ..+.+... ..+.++.+..+  +   ..+..+++                 ..
T Consensus        20 ~gk~vvl~F~~~wC~~C~~~~p~l---~~~~~~~~-~~~~vi~v~~~--~---~~~~~~~~~~~~~~~~p~~~~~~~~~~   90 (114)
T cd02967          20 PGRPTLLFFLSPTCPVCKKLLPVI---RSIARAEA-DWLDVVLASDG--E---KAEHQRFLKKHGLEAFPYVLSAELGMA   90 (114)
T ss_pred             CCCeEEEEEECCCCcchHhHhHHH---HHHHHHhc-CCcEEEEEeCC--C---HHHHHHHHHHhCCCCCcEEecHHHHhh
Confidence            589999999999999998875332   11222233 45655555322  0   22333344                 44


Q ss_pred             cCCCCCceEEEEeCCCCceE
Q 036413          208 YKLDSLPVVLVIDPITGEKM  227 (346)
Q Consensus       208 y~~~~~P~i~iidp~tge~l  227 (346)
                      |++...|+..|||+ .|+.+
T Consensus        91 ~~~~~~P~~~vid~-~G~v~  109 (114)
T cd02967          91 YQVSKLPYAVLLDE-AGVIA  109 (114)
T ss_pred             cCCCCcCeEEEECC-CCeEE
Confidence            45556677777775 46544

mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.

>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic

Probab=94.99  E-value=0.085  Score=52.84  Aligned_cols=95  Identities=15%  Similarity=0.233  Sum_probs=66.4

Q ss_pred             ccccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccC---cEEEEEeecCCCCCCCChHHHHHHh
Q 036413          130 MFNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRAS---NFIFWQVYDDDDDDDDDSECRKVCG  206 (346)
Q Consensus       130 ~~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~---nFVfw~~~~~~~~~~~~~eg~~~~~  206 (346)
                      +...+|++..   ...+|-+||+++.+||..|..|...+   ..+.+.++ .   ++.|..++.+      ..+   +..
T Consensus       351 l~~~~f~~~v---~~~~~~vlv~f~a~wC~~C~~~~p~~---~~~~~~~~-~~~~~i~~~~id~~------~n~---~~~  414 (462)
T TIGR01130       351 LVGKNFDEIV---LDETKDVLVEFYAPWCGHCKNLAPIY---EELAEKYK-DAESDVVIAKMDAT------AND---VPP  414 (462)
T ss_pred             eeCcCHHHHh---ccCCCeEEEEEECCCCHhHHHHHHHH---HHHHHHhh-cCCCcEEEEEEECC------CCc---cCC
Confidence            3455677664   34689999999999999999985432   44556666 5   7889999887      333   333


Q ss_pred             hcCCCCCceEEEEeCCCCce--EEEEeCCCChHHHHHHH
Q 036413          207 YYKLDSLPVVLVIDPITGEK--MRKWCGMVDPVSLLEDL  243 (346)
Q Consensus       207 ~y~~~~~P~i~iidp~tge~--l~~~~G~~~~~~~i~~L  243 (346)
                       |++..+|++.+...  |.+  .....|..+.+.+++.|
T Consensus       415 -~~i~~~Pt~~~~~~--~~~~~~~~~~g~~~~~~l~~~l  450 (462)
T TIGR01130       415 -FEVEGFPTIKFVPA--GKKSEPVPYDGDRTLEDFSKFI  450 (462)
T ss_pred             -CCccccCEEEEEeC--CCCcCceEecCcCCHHHHHHHH
Confidence             88999999999974  433  24567877765544443

Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).

>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate

Probab=94.92  E-value=0.025  Score=48.84  Aligned_cols=26  Identities=23%  Similarity=0.506  Sum_probs=21.0

Q ss_pred             eEEEEeCCCCceEEEEeCCCChHHHHH
Q 036413          215 VVLVIDPITGEKMRKWCGMVDPVSLLE  241 (346)
Q Consensus       215 ~i~iidp~tge~l~~~~G~~~~~~~i~  241 (346)
                      +..|||+ .|+.+.++.|.++++++..
T Consensus       125 ttflId~-~G~i~~~~~G~~~~~~l~~  150 (152)
T cd00340         125 TKFLVDR-DGEVVKRFAPTTDPEELEK  150 (152)
T ss_pred             EEEEECC-CCcEEEEECCCCCHHHHHh
Confidence            6889996 6999999999888776543

GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.

>PRK15000 peroxidase; Provisional

Probab=94.39  E-value=0.2  Score=45.67  Aligned_cols=91  Identities=13%  Similarity=0.037  Sum_probs=61.0

Q ss_pred             cCcEEEEEecCC-CCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChH-----------------------
Q 036413          145 ENKWLLVNLQSP-KEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSE-----------------------  200 (346)
Q Consensus       145 ~~K~LlV~l~~~-~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~e-----------------------  200 (346)
                      .+||++|+++.. +|+.|..-...+  ++...+|-+ .++.+++++.+      +.+                       
T Consensus        33 ~gk~vvL~F~p~~~t~vC~~El~~l--~~~~~~f~~-~g~~vigvS~D------~~~~~~~w~~~~~~~~g~~~i~fpll  103 (200)
T PRK15000         33 NGKTTVLFFWPMDFTFVCPSELIAF--DKRYEEFQK-RGVEVVGVSFD------SEFVHNAWRNTPVDKGGIGPVKYAMV  103 (200)
T ss_pred             CCCEEEEEEECCCCCCCCHHHHHHH--HHHHHHHHH-CCCEEEEEECC------CHHHHHHHHhhHHHhCCccccCceEE
Confidence            589999999985 789997643221  234444545 78888888887      332                       


Q ss_pred             ---HHHHHhhcCCC------CCceEEEEeCCCCceEEEEeCC----CChHHHHHHHHH
Q 036413          201 ---CRKVCGYYKLD------SLPVVLVIDPITGEKMRKWCGM----VDPVSLLEDLLS  245 (346)
Q Consensus       201 ---g~~~~~~y~~~------~~P~i~iidp~tge~l~~~~G~----~~~~~~i~~L~~  245 (346)
                         ...+++.|++.      .+|...|||| .|.....+.|.    -+.+++++.|..
T Consensus       104 sD~~~~ia~~ygv~~~~~g~~~r~tfiID~-~G~I~~~~~~~~~~gr~~~eilr~l~a  160 (200)
T PRK15000        104 ADVKREIQKAYGIEHPDEGVALRGSFLIDA-NGIVRHQVVNDLPLGRNIDEMLRMVDA  160 (200)
T ss_pred             ECCCcHHHHHcCCccCCCCcEEeEEEEECC-CCEEEEEEecCCCCCCCHHHHHHHHHH
Confidence               12445566664      5899999998 58877776553    256667666644

>TIGR03137 AhpC peroxiredoxin

Probab=94.30  E-value=0.17  Score=45.32  Aligned_cols=90  Identities=17%  Similarity=0.144  Sum_probs=58.5

Q ss_pred             cCcEEEEEec-CCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChH-----------------------
Q 036413          145 ENKWLLVNLQ-SPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSE-----------------------  200 (346)
Q Consensus       145 ~~K~LlV~l~-~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~e-----------------------  200 (346)
                      .+||++|++. ..+|+.|..-...+  ++...+|-+ .++.++.++.+      +++                       
T Consensus        30 ~Gk~vvl~F~p~~~cp~C~~el~~l--~~~~~~~~~-~gv~vi~VS~D------~~~~~~~~~~~~~~~~~l~fpllsD~  100 (187)
T TIGR03137        30 KGKWSVFFFYPADFTFVCPTELEDL--ADKYAELKK-LGVEVYSVSTD------THFVHKAWHDTSEAIGKITYPMLGDP  100 (187)
T ss_pred             CCCEEEEEEECCCcCCcCHHHHHHH--HHHHHHHHh-cCCcEEEEeCC------CHHHHHHHHhhhhhccCcceeEEECC
Confidence            5899999998 88999997643322  223334444 67888888776      221                       


Q ss_pred             HHHHHhhcCCC------CCceEEEEeCCCCceEEEEeCC----CChHHHHHHHH
Q 036413          201 CRKVCGYYKLD------SLPVVLVIDPITGEKMRKWCGM----VDPVSLLEDLL  244 (346)
Q Consensus       201 g~~~~~~y~~~------~~P~i~iidp~tge~l~~~~G~----~~~~~~i~~L~  244 (346)
                      ...++..|++.      ..|...|||+ .|.....+.+.    -..++++..|.
T Consensus       101 ~~~~a~~~gv~~~~~g~~~p~tfiID~-~G~I~~~~~~~~~~~~~~~~ll~~l~  153 (187)
T TIGR03137       101 TGVLTRNFGVLIEEAGLADRGTFVIDP-EGVIQAVEITDNGIGRDASELLRKIK  153 (187)
T ss_pred             ccHHHHHhCCcccCCCceeeEEEEECC-CCEEEEEEEeCCCCCCCHHHHHHHHH
Confidence            23455666653      3599999997 58888776432    25566666653

This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.

>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides

Probab=94.29  E-value=0.19  Score=44.28  Aligned_cols=97  Identities=16%  Similarity=0.121  Sum_probs=57.8

Q ss_pred             cCcEEEEEec-CCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCC--------------CC------ChHHHH
Q 036413          145 ENKWLLVNLQ-SPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDD--------------DD------DSECRK  203 (346)
Q Consensus       145 ~~K~LlV~l~-~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~--------------~~------~~eg~~  203 (346)
                      .+||++|++. ..+|..|..-.+.+  +....+|-+ .++.++.++.+...+              ..      ......
T Consensus        28 ~Gk~vvl~F~~~~~c~~C~~~l~~l--~~~~~~~~~-~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~  104 (173)
T cd03015          28 KGKWVVLFFYPLDFTFVCPTEIIAF--SDRYEEFKK-LNAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKK  104 (173)
T ss_pred             CCCEEEEEEECCCCCCcCHHHHHHH--HHHHHHHHH-CCCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCchh
Confidence            5799999998 67899998754332  222333334 677777777661000              00      001223


Q ss_pred             HHhhcCCC------CCceEEEEeCCCCceEEEEeCCC----ChHHHHHHHHH
Q 036413          204 VCGYYKLD------SLPVVLVIDPITGEKMRKWCGMV----DPVSLLEDLLS  245 (346)
Q Consensus       204 ~~~~y~~~------~~P~i~iidp~tge~l~~~~G~~----~~~~~i~~L~~  245 (346)
                      ++..|++.      ..|++.|||+ .|..+.++.+..    +.++++..|..
T Consensus       105 ~~~~~gv~~~~~~~~~p~~~lID~-~G~I~~~~~~~~~~~~~~~~il~~l~~  155 (173)
T cd03015         105 ISRDYGVLDEEEGVALRGTFIIDP-EGIIRHITVNDLPVGRSVDETLRVLDA  155 (173)
T ss_pred             HHHHhCCccccCCceeeEEEEECC-CCeEEEEEecCCCCCCCHHHHHHHHHH
Confidence            44556653      4689999997 588888875532    34556666544

The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric

>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]

Probab=94.25  E-value=0.18  Score=44.45  Aligned_cols=87  Identities=15%  Similarity=0.216  Sum_probs=60.5

Q ss_pred             HHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCc---EEEEEeecCCCCCCC----------------
Q 036413          137 KAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASN---FIFWQVYDDDDDDDD----------------  197 (346)
Q Consensus       137 ~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~n---FVfw~~~~~~~~~~~----------------  197 (346)
                      ++.....=++|-+.+|+...||.+|+.|   ||.=..+-+-|+ ++   |-..-++.+.+..+.                
T Consensus        24 ~~~~~~~l~gKvV~lyFsA~wC~pCR~F---TP~Lk~fYe~l~-~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf   99 (157)
T KOG2501|consen   24 EVLASEALQGKVVGLYFSAHWCPPCRDF---TPILKDFYEELK-DNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPF   99 (157)
T ss_pred             cchHhHhhCCcEEEEEEEEEECCchhhC---CchHHHHHHHHH-hcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecC
Confidence            3444444567999999999999999999   666667777777 67   755545555211000                


Q ss_pred             -ChHHHHHHhhcCCCCCceEEEEeCCCCceEE
Q 036413          198 -DSECRKVCGYYKLDSLPVVLVIDPITGEKMR  228 (346)
Q Consensus       198 -~~eg~~~~~~y~~~~~P~i~iidp~tge~l~  228 (346)
                       ++--++++..|.+...|.+.||.| .|..+.
T Consensus       100 ~d~~~~~l~~ky~v~~iP~l~i~~~-dG~~v~  130 (157)
T KOG2501|consen  100 GDDLIQKLSEKYEVKGIPALVILKP-DGTVVT  130 (157)
T ss_pred             CCHHHHHHHHhcccCcCceeEEecC-CCCEeh
Confidence             233455667899999999999998 576664

>PHA02125 thioredoxin-like protein

Probab=94.24  E-value=0.069  Score=40.57  Aligned_cols=71  Identities=14%  Similarity=0.250  Sum_probs=48.1

Q ss_pred             EEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCCCCceEEEEeCCCCceEEE
Q 036413          150 LVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVLVIDPITGEKMRK  229 (346)
Q Consensus       150 lV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~i~iidp~tge~l~~  229 (346)
                      +|+++++||..|+.+.+- |     .+ +   .|.+..++.+        +...++..|++..+|++.     .|+.+..
T Consensus         2 iv~f~a~wC~~Ck~~~~~-l-----~~-~---~~~~~~vd~~--------~~~~l~~~~~v~~~PT~~-----~g~~~~~   58 (75)
T PHA02125          2 IYLFGAEWCANCKMVKPM-L-----AN-V---EYTYVDVDTD--------EGVELTAKHHIRSLPTLV-----NTSTLDR   58 (75)
T ss_pred             EEEEECCCCHhHHHHHHH-H-----HH-H---hheEEeeeCC--------CCHHHHHHcCCceeCeEE-----CCEEEEE
Confidence            688899999999988542 1     11 1   2444444433        356889999999999986     3777778


Q ss_pred             EeCC-CChHHHHHHH
Q 036413          230 WCGM-VDPVSLLEDL  243 (346)
Q Consensus       230 ~~G~-~~~~~~i~~L  243 (346)
                      +.|. .+..++.+.|
T Consensus        59 ~~G~~~~~~~l~~~~   73 (75)
T PHA02125         59 FTGVPRNVAELKEKL   73 (75)
T ss_pred             EeCCCCcHHHHHHHh
Confidence            8885 2335555444

>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells

Probab=94.16  E-value=0.35  Score=40.57  Aligned_cols=94  Identities=22%  Similarity=0.274  Sum_probs=61.1

Q ss_pred             ccCHHHHHHHhhhcCcEEEEEecC--CCCc---cccccccccCCCHHHHHHhc-cCcEEEEEeecCCCCCCCChHHHHHH
Q 036413          132 NGSFEKAKDVGSDENKWLLVNLQS--PKEF---TSHTLNRDTWADEAVSQTIR-ASNFIFWQVYDDDDDDDDDSECRKVC  205 (346)
Q Consensus       132 ~gsf~~A~~~Ak~~~K~LlV~l~~--~~~f---~c~~lnRdvw~~~~V~~~i~-~~nFVfw~~~~~~~~~~~~~eg~~~~  205 (346)
                      ..+|++++    ++++.+||-+..  +||.   .|..|         .-++-. +...++-.++.+++.   ..+...++
T Consensus         8 ~~nF~~~v----~~~~~vlV~F~A~~Pwc~k~~~~~~L---------A~e~~~aa~~v~lakVd~~d~~---~~~~~~L~   71 (116)
T cd03007           8 TVTFYKVI----PKFKYSLVKFDTAYPYGEKHEAFTRL---------AESSASATDDLLVAEVGIKDYG---EKLNMELG   71 (116)
T ss_pred             hhhHHHHH----hcCCcEEEEEeCCCCCCCChHHHHHH---------HHHHHhhcCceEEEEEeccccc---chhhHHHH
Confidence            44666655    667899999999  5554   33333         122222 235788888876100   14557899


Q ss_pred             hhcCCC--CCceEEEEeCCCCc--eEEEEeCC-CChHHHHHHH
Q 036413          206 GYYKLD--SLPVVLVIDPITGE--KMRKWCGM-VDPVSLLEDL  243 (346)
Q Consensus       206 ~~y~~~--~~P~i~iidp~tge--~l~~~~G~-~~~~~~i~~L  243 (346)
                      ..|+++  .||+|.+...  |+  ......|. .+.+.+++-|
T Consensus        72 ~~y~I~~~gyPTl~lF~~--g~~~~~~~Y~G~~r~~~~lv~~v  112 (116)
T cd03007          72 ERYKLDKESYPVIYLFHG--GDFENPVPYSGADVTVDALQRFL  112 (116)
T ss_pred             HHhCCCcCCCCEEEEEeC--CCcCCCccCCCCcccHHHHHHHH
Confidence            999999  9999999984  43  33456785 7777666543

It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.

>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1

Probab=94.10  E-value=0.21  Score=37.59  Aligned_cols=74  Identities=12%  Similarity=0.163  Sum_probs=51.4

Q ss_pred             EecCCCCccccccccccCCCHHHHHHh---ccCcEEEEEeecCCCCCCCChHHHHHHhhcCCCCCceEEEEeCCCCceEE
Q 036413          152 NLQSPKEFTSHTLNRDTWADEAVSQTI---RASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVLVIDPITGEKMR  228 (346)
Q Consensus       152 ~l~~~~~f~c~~lnRdvw~~~~V~~~i---~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~i~iidp~tge~l~  228 (346)
                      -++++||..|+.+.      +.+.++.   + .++-+..++.+.     .   ...+..|++..+|++.+ +   |+  .
T Consensus         5 ~f~~~~C~~C~~~~------~~l~~l~~~~~-~~~~~~~vd~~~-----~---~~~~~~~~v~~vPt~~~-~---g~--~   63 (82)
T TIGR00411         5 LFTSPTCPYCPAAK------RVVEEVAKEMG-DAVEVEYINVME-----N---PQKAMEYGIMAVPAIVI-N---GD--V   63 (82)
T ss_pred             EEECCCCcchHHHH------HHHHHHHHHhc-CceEEEEEeCcc-----C---HHHHHHcCCccCCEEEE-C---CE--E
Confidence            34678999998883      3444433   3 456677777662     2   34667799999999975 3   54  2


Q ss_pred             EEeCCCChHHHHHHHHHH
Q 036413          229 KWCGMVDPVSLLEDLLSF  246 (346)
Q Consensus       229 ~~~G~~~~~~~i~~L~~f  246 (346)
                      .+.|..+++++.+.|...
T Consensus        64 ~~~G~~~~~~l~~~l~~~   81 (82)
T TIGR00411        64 EFIGAPTKEELVEAIKKR   81 (82)
T ss_pred             EEecCCCHHHHHHHHHhh
Confidence            678988888888777654

This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.

>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed

Probab=93.81  E-value=0.41  Score=40.95  Aligned_cols=33  Identities=12%  Similarity=0.289  Sum_probs=23.3

Q ss_pred             ceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHH
Q 036413          214 PVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFME  248 (346)
Q Consensus       214 P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~  248 (346)
                      |+..|||+ .|..+.++.|.... +-++.+..+++
T Consensus       121 ~~~~lid~-~G~i~~~~~g~~~~-~~~~~~~~~~~  153 (154)
T PRK09437        121 RISFLIDA-DGKIEHVFDKFKTS-NHHDVVLDYLK  153 (154)
T ss_pred             eEEEEECC-CCEEEEEEcCCCcc-hhHHHHHHHHh
Confidence            77899997 59999999986443 34555655553

>TIGR02540 gpx7 putative glutathione peroxidase Gpx7

Probab=93.49  E-value=0.91  Score=38.97  Aligned_cols=34  Identities=12%  Similarity=0.326  Sum_probs=28.2

Q ss_pred             CCce----EEEEeCCCCceEEEEeCCCChHHHHHHHHHH
Q 036413          212 SLPV----VLVIDPITGEKMRKWCGMVDPVSLLEDLLSF  246 (346)
Q Consensus       212 ~~P~----i~iidp~tge~l~~~~G~~~~~~~i~~L~~f  246 (346)
                      .+|.    ..|||+ .|+.+.++.|.++++++...|.+.
T Consensus       115 ~~p~~~~~tflID~-~G~v~~~~~g~~~~~~l~~~i~~l  152 (153)
T TIGR02540       115 KEPRWNFWKYLVNP-EGQVVKFWRPEEPVEEIRPEITAL  152 (153)
T ss_pred             CCCCCccEEEEEcC-CCcEEEEECCCCCHHHHHHHHHHh
Confidence            4787    899996 799999999999998887777653

This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.

>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins

Probab=93.42  E-value=0.32  Score=41.04  Aligned_cols=81  Identities=15%  Similarity=0.136  Sum_probs=50.8

Q ss_pred             hhcCcEEEEEecCC-CCccccccccccCCCHHHHHH---hccCcEEEEEeecCCCCCCCChHH-----------------
Q 036413          143 SDENKWLLVNLQSP-KEFTSHTLNRDTWADEAVSQT---IRASNFIFWQVYDDDDDDDDDSEC-----------------  201 (346)
Q Consensus       143 k~~~K~LlV~l~~~-~~f~c~~lnRdvw~~~~V~~~---i~~~nFVfw~~~~~~~~~~~~~eg-----------------  201 (346)
                      .-.+|.++|++-.. ||..|+.--.      .+.++   .+..++.+..+..+.     ++..                 
T Consensus        25 ~~~gk~~vv~f~~~~~Cp~C~~~~p------~l~~l~~~~~~~~v~~v~v~~~~-----~~~~~~~~~~~~~~~~~~~D~   93 (146)
T PF08534_consen   25 DFKGKPVVVNFWASAWCPPCRKELP------YLNELQEKYKDKGVDVVGVSSDD-----DPPVREFLKKYGINFPVLSDP   93 (146)
T ss_dssp             GGTTSEEEEEEESTTTSHHHHHHHH------HHHHHHHHHHTTTCEEEEEEESS-----SHHHHHHHHHTTTTSEEEEET
T ss_pred             HhCCCeEEEEEEccCCCCcchhhhh------hHHhhhhhhccCceEEEEecccC-----CHHHHHHHHhhCCCceEEech
Confidence            35678888888777 8888865421      22222   221445555554442     2222                 


Q ss_pred             -HHHHhhcCCC---------CCceEEEEeCCCCceEEEEeCCCC
Q 036413          202 -RKVCGYYKLD---------SLPVVLVIDPITGEKMRKWCGMVD  235 (346)
Q Consensus       202 -~~~~~~y~~~---------~~P~i~iidp~tge~l~~~~G~~~  235 (346)
                       ..+...|++.         .+|++.|||+ .|..+....|..+
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~P~~~lId~-~G~V~~~~~g~~~  136 (146)
T PF08534_consen   94 DGALAKALGVTIMEDPGNGFGIPTTFLIDK-DGKVVYRHVGPDP  136 (146)
T ss_dssp             TSHHHHHTTCEEECCTTTTSSSSEEEEEET-TSBEEEEEESSBT
T ss_pred             HHHHHHHhCCccccccccCCeecEEEEEEC-CCEEEEEEeCCCC
Confidence             3445566666         8999999996 6998888888544

Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....

>PRK11509 hydrogenase-1 operon protein HyaE; Provisional

Probab=93.38  E-value=0.59  Score=40.09  Aligned_cols=114  Identities=10%  Similarity=0.022  Sum_probs=74.1

Q ss_pred             hhhHHHHhhcCCCcccccccCHHHHHHHhhhcCcEEEEEecCC-CCccccccccccCCCHHHHHHhc----cCcEEEEEe
Q 036413          114 NNNNNLASLYRPPVDLMFNGSFEKAKDVGSDENKWLLVNLQSP-KEFTSHTLNRDTWADEAVSQTIR----ASNFIFWQV  188 (346)
Q Consensus       114 ~~~~~l~~lf~PP~~l~~~gsf~~A~~~Ak~~~K~LlV~l~~~-~~f~c~~lnRdvw~~~~V~~~i~----~~nFVfw~~  188 (346)
                      .-.++|.+ ++-|.  .-..++++-+..+.    ..+|.|.+. .-|.      +++-...|.+=|.    ...+.|..+
T Consensus         9 ~l~~rl~~-~g~~~--~~~~~~~~~~~~~~----~~vl~~~gdp~r~~------E~~D~avvleELa~e~~~~~v~~akV   75 (132)
T PRK11509          9 ALWQRMLA-RGWTP--VSESRLDDWLTQAP----DGVVLLSSDPKRTP------EVSDNPVMIGELLREFPDYTWQVAIA   75 (132)
T ss_pred             HHHHHHHH-cCCCc--cccccHHHHHhCCC----cEEEEeCCCCCcCC------ccccHHHHHHHHHHHhcCCceEEEEE
Confidence            34567777 34433  34566666663322    345556442 2111      2222233333222    023678887


Q ss_pred             ecCCCCCCCChHHHHHHhhcCCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHHcC
Q 036413          189 YDDDDDDDDDSECRKVCGYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMESG  250 (346)
Q Consensus       189 ~~~~~~~~~~~eg~~~~~~y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~~~  250 (346)
                      +.+      .  ...++..|++.++|++++.-  .|+.+..+.|..+.+++++.|.+++++-
T Consensus        76 DiD------~--~~~LA~~fgV~siPTLl~Fk--dGk~v~~i~G~~~k~~l~~~I~~~L~~~  127 (132)
T PRK11509         76 DLE------Q--SEAIGDRFGVFRFPATLVFT--GGNYRGVLNGIHPWAELINLMRGLVEPQ  127 (132)
T ss_pred             ECC------C--CHHHHHHcCCccCCEEEEEE--CCEEEEEEeCcCCHHHHHHHHHHHhcCc
Confidence            777      2  37899999999999999998  5999999999999999999999998764

>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional

Probab=93.29  E-value=0.49  Score=42.75  Aligned_cols=110  Identities=17%  Similarity=0.228  Sum_probs=67.8

Q ss_pred             CCccc--ccccCHHHHHHHhhhcCcEEEEEec-CCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChH-
Q 036413          125 PPVDL--MFNGSFEKAKDVGSDENKWLLVNLQ-SPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSE-  200 (346)
Q Consensus       125 PP~~l--~~~gsf~~A~~~Ak~~~K~LlV~l~-~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~e-  200 (346)
                      |+|..  ++.|++..... +.=.+||++++++ ..+|+.|..--..+  ++...+|-+ .++.+++++.+      ++. 
T Consensus         9 p~f~~~~~~~g~~~~v~L-~d~~Gk~vvL~F~P~~~~p~C~~el~~l--~~~~~~f~~-~g~~vigIS~D------~~~~   78 (187)
T PRK10382          9 KPFKNQAFKNGEFIEVTE-KDTEGRWSVFFFYPADFTFVCPTELGDV--ADHYEELQK-LGVDVYSVSTD------THFT   78 (187)
T ss_pred             CCcEEEEEeCCcceEEEH-HHhCCCeEEEEEECCCCCCcCHHHHHHH--HHHHHHHHh-CCCEEEEEeCC------CHHH
Confidence            55554  23355533221 2225789999998 78999996632221  234444545 67888888877      332 


Q ss_pred             ----------------------HHHHHhhcCC----CCC--ceEEEEeCCCCceEEEEeC----CCChHHHHHHHHH
Q 036413          201 ----------------------CRKVCGYYKL----DSL--PVVLVIDPITGEKMRKWCG----MVDPVSLLEDLLS  245 (346)
Q Consensus       201 ----------------------g~~~~~~y~~----~~~--P~i~iidp~tge~l~~~~G----~~~~~~~i~~L~~  245 (346)
                                            ...++..|++    ..+  |...|||| .|.....+..    -.+.+++++.|..
T Consensus        79 ~~a~~~~~~~~~~l~fpllsD~~~~ia~~ygv~~~~~g~~~r~tfIID~-~G~I~~~~~~~~~~~~~~~eil~~l~a  154 (187)
T PRK10382         79 HKAWHSSSETIAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDP-QGIIQAIEVTAEGIGRDASDLLRKIKA  154 (187)
T ss_pred             HHHHHHhhccccCCceeEEEcCchHHHHHcCCCcccCCceeeEEEEECC-CCEEEEEEEeCCCCCCCHHHHHHHHHh
Confidence                                  2456677776    234  99999997 5887766532    1367777776643

>PTZ00253 tryparedoxin peroxidase; Provisional

Probab=93.11  E-value=0.47  Score=42.94  Aligned_cols=84  Identities=14%  Similarity=0.192  Sum_probs=52.8

Q ss_pred             cCcEEEEEecC-CCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCC-------C-------C------ChHHHH
Q 036413          145 ENKWLLVNLQS-PKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDD-------D-------D------DSECRK  203 (346)
Q Consensus       145 ~~K~LlV~l~~-~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~-------~-------~------~~eg~~  203 (346)
                      .+||++|+++. .+|+.|..--..+  ++...+|-+ .++-++.++.+....       .       .      ......
T Consensus        35 ~Gk~~lL~F~p~~~~~~C~~e~~~l--~~~~~~f~~-~g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~  111 (199)
T PTZ00253         35 KGKWVVLFFYPLDFTFVCPTEIIQF--SDSVKRFNE-LNCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKS  111 (199)
T ss_pred             CCCEEEEEEEcCCCCCcCHHHHHHH--HHHHHHHHH-cCCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcHhH
Confidence            57999999985 5688887543221  333444444 688888887772000       0       0      012345


Q ss_pred             HHhhcCCC------CCceEEEEeCCCCceEEEEeC
Q 036413          204 VCGYYKLD------SLPVVLVIDPITGEKMRKWCG  232 (346)
Q Consensus       204 ~~~~y~~~------~~P~i~iidp~tge~l~~~~G  232 (346)
                      +++.|++-      .||...|||| .|.....+.+
T Consensus       112 ia~~ygv~~~~~g~~~r~~fiID~-~G~i~~~~~~  145 (199)
T PTZ00253        112 IARSYGVLEEEQGVAYRGLFIIDP-KGMLRQITVN  145 (199)
T ss_pred             HHHHcCCcccCCCceEEEEEEECC-CCEEEEEEec
Confidence            67778763      4799999998 5887776655

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=92.72  E-value=0.48  Score=45.87  Aligned_cols=100  Identities=19%  Similarity=0.270  Sum_probs=71.2

Q ss_pred             ccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCC
Q 036413          132 NGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLD  211 (346)
Q Consensus       132 ~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~  211 (346)
                      .-+|++...++. ..+++|||+-++||.+|..|--.+   +.+..=-+ ..|++--++.+      ..  ..++..+++.
T Consensus        30 ~anfe~~V~~~S-~~~PVlV~fWap~~~~c~qL~p~L---ekla~~~~-G~f~LakvN~D------~~--p~vAaqfgiq   96 (304)
T COG3118          30 EANFEQEVIQSS-REVPVLVDFWAPWCGPCKQLTPTL---EKLAAEYK-GKFKLAKVNCD------AE--PMVAAQFGVQ   96 (304)
T ss_pred             HhHHHHHHHHHc-cCCCeEEEecCCCCchHHHHHHHH---HHHHHHhC-CceEEEEecCC------cc--hhHHHHhCcC
Confidence            445777766653 347999999999999999884222   22333334 79999999888      22  5688999999


Q ss_pred             CCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHHcC
Q 036413          212 SLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMESG  250 (346)
Q Consensus       212 ~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~~~  250 (346)
                      +.|+|..+-  .|+-+.-+.|... +   +.|.+|+++.
T Consensus        97 sIPtV~af~--dGqpVdgF~G~qP-e---sqlr~~ld~~  129 (304)
T COG3118          97 SIPTVYAFK--DGQPVDGFQGAQP-E---SQLRQFLDKV  129 (304)
T ss_pred             cCCeEEEee--CCcCccccCCCCc-H---HHHHHHHHHh
Confidence            999988876  4888877888544 3   4455555543

>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2

Probab=92.21  E-value=0.65  Score=35.38  Aligned_cols=69  Identities=16%  Similarity=0.119  Sum_probs=45.4

Q ss_pred             EEecCCCCccccccccccCCCHHHHHHhcc--CcEEEEEeecCCCCCCCChHHHHHHhhcCCCCCceEEEEeCCCCceEE
Q 036413          151 VNLQSPKEFTSHTLNRDTWADEAVSQTIRA--SNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVLVIDPITGEKMR  228 (346)
Q Consensus       151 V~l~~~~~f~c~~lnRdvw~~~~V~~~i~~--~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~i~iidp~tge~l~  228 (346)
                      |.++++||..|+.+      .+.+.+++.+  ..+.|..++        +.+   -+..|++...|+++|    .|+.+ 
T Consensus         3 i~~~a~~C~~C~~~------~~~~~~~~~e~~~~~~~~~v~--------~~~---~a~~~~v~~vPti~i----~G~~~-   60 (76)
T TIGR00412         3 IQIYGTGCANCQMT------EKNVKKAVEELGIDAEFEKVT--------DMN---EILEAGVTATPGVAV----DGELV-   60 (76)
T ss_pred             EEEECCCCcCHHHH------HHHHHHHHHHcCCCeEEEEeC--------CHH---HHHHcCCCcCCEEEE----CCEEE-
Confidence            67788999999988      3566666651  235554443        222   156699999999999    47766 


Q ss_pred             EEeCC-CChHHHHHH
Q 036413          229 KWCGM-VDPVSLLED  242 (346)
Q Consensus       229 ~~~G~-~~~~~~i~~  242 (346)
                       +.|. .+.+++.+.
T Consensus        61 -~~G~~~~~~~l~~~   74 (76)
T TIGR00412        61 -IMGKIPSKEEIKEI   74 (76)
T ss_pred             -EEeccCCHHHHHHH
Confidence             7785 344544443

This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.

>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs)

Probab=92.01  E-value=0.46  Score=32.24  Aligned_cols=39  Identities=18%  Similarity=0.233  Sum_probs=33.9

Q ss_pred             HHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhh
Q 036413           11 KRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNN   49 (346)
Q Consensus        11 ~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~   49 (346)
                      ++.|.+.+++--.-+.+.-+..|++++||+|.||+..++
T Consensus         2 ~~~v~~L~~mFP~~~~~~I~~~L~~~~~~ve~ai~~LL~   40 (42)
T PF02845_consen    2 EEMVQQLQEMFPDLDREVIEAVLQANNGDVEAAIDALLE   40 (42)
T ss_dssp             HHHHHHHHHHSSSS-HHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence            467888888878889999999999999999999998875

CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.

>KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones]

Probab=91.76  E-value=0.015  Score=56.90  Aligned_cols=87  Identities=18%  Similarity=0.208  Sum_probs=69.8

Q ss_pred             hhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCC-hHHHHHHhhcCCC--CCceEEE
Q 036413          142 GSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDD-SECRKVCGYYKLD--SLPVVLV  218 (346)
Q Consensus       142 Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~-~eg~~~~~~y~~~--~~P~i~i  218 (346)
                      ++-..+|+.|.++.+-.+.|++|++..|..+.++.++. +++.+|+.+... ..-.+ -++++....|...  ..++..+
T Consensus         7 ~~lv~~fl~It~~~t~e~A~q~L~~~~~~le~ai~Lff-e~~~~~~~~s~~-~~a~sp~~~~re~l~~~~~~~d~~~~s~   84 (356)
T KOG1364|consen    7 RALVSKFLAITVQQTVEIATQYLSAADWDLEAAINLFF-EHGGFTQVYSSS-SAAPSPIEPQREVLFDPLGIMDQSTSSI   84 (356)
T ss_pred             HHHHHHHHHHhccccHHHHHHHHHhcCCcHHHHHHHHH-HhcccccccCCc-ccCCCcccccceeeeccccccccCcccc
Confidence            44567899999999999999999999999999999999 999999998841 11113 4566677666665  8999999


Q ss_pred             EeCCCCceEEEE
Q 036413          219 IDPITGEKMRKW  230 (346)
Q Consensus       219 idp~tge~l~~~  230 (346)
                      ++|++|....-|
T Consensus        85 ~~p~~~~~~~s~   96 (356)
T KOG1364|consen   85 LDPSENQDDESE   96 (356)
T ss_pred             cCcccccchhhh
Confidence            999988765444

>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional

Probab=91.44  E-value=1.7  Score=38.11  Aligned_cols=92  Identities=15%  Similarity=0.026  Sum_probs=52.1

Q ss_pred             cCcEEEEEecCCC-CccccccccccCCCHHHHHHhcc-CcEEEEEeecCCCC--------CCC-------ChHHHHHHhh
Q 036413          145 ENKWLLVNLQSPK-EFTSHTLNRDTWADEAVSQTIRA-SNFIFWQVYDDDDD--------DDD-------DSECRKVCGY  207 (346)
Q Consensus       145 ~~K~LlV~l~~~~-~f~c~~lnRdvw~~~~V~~~i~~-~nFVfw~~~~~~~~--------~~~-------~~eg~~~~~~  207 (346)
                      .+|+++|++...| |+.|..--      +.+.++.++ .++.+++++.+.-.        ..-       +..+..++..
T Consensus        43 ~Gk~vvl~f~~s~~cp~C~~e~------~~l~~~~~~~~~~~vv~vs~D~~~~~~~f~~~~~~~~~~~lsD~~~~~~~~~  116 (167)
T PRK00522         43 AGKRKVLNIFPSIDTGVCATSV------RKFNQEAAELDNTVVLCISADLPFAQKRFCGAEGLENVITLSDFRDHSFGKA  116 (167)
T ss_pred             CCCEEEEEEEcCCCCCccHHHH------HHHHHHHHHcCCcEEEEEeCCCHHHHHHHHHhCCCCCceEeecCCccHHHHH
Confidence            5889999999887 88886521      122222221 24555555544100        000       1234466667


Q ss_pred             cCCCCCc---------eEEEEeCCCCceEEEEeCC-----CChHHHHHHH
Q 036413          208 YKLDSLP---------VVLVIDPITGEKMRKWCGM-----VDPVSLLEDL  243 (346)
Q Consensus       208 y~~~~~P---------~i~iidp~tge~l~~~~G~-----~~~~~~i~~L  243 (346)
                      |++...|         ...|||+ +|.....+.+.     .+.+++++.|
T Consensus       117 ~gv~~~~~~~~g~~~r~tfvId~-~G~I~~~~~~~~~~~~~~~~~~l~~l  165 (167)
T PRK00522        117 YGVAIAEGPLKGLLARAVFVLDE-NNKVVYSELVPEITNEPDYDAALAAL  165 (167)
T ss_pred             hCCeecccccCCceeeEEEEECC-CCeEEEEEECCCcCCCCCHHHHHHHh
Confidence            7765555         8899995 68888777431     2445555544

>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs)

Probab=91.34  E-value=0.6  Score=31.75  Aligned_cols=40  Identities=18%  Similarity=0.248  Sum_probs=33.5

Q ss_pred             HHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhhc
Q 036413           11 KRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNNN   50 (346)
Q Consensus        11 ~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~~   50 (346)
                      .+.|.+.+++=-..+.+..+..|++++||+|.||+..++.
T Consensus         3 ~~~v~~L~~mFP~l~~~~I~~~L~~~~g~ve~~i~~LL~~   42 (43)
T smart00546        3 DEALHDLKDMFPNLDEEVIKAVLEANNGNVEATINNLLEG   42 (43)
T ss_pred             HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence            3456667777677899999999999999999999988763

CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)

>TIGR02187 GlrX_arch Glutaredoxin-like domain protein

Probab=91.24  E-value=1.3  Score=40.59  Aligned_cols=84  Identities=14%  Similarity=0.122  Sum_probs=55.9

Q ss_pred             hhcCcEEEEE-ecCCCCccccccccccCCCHHHHHHhcc-CcEEEEEeecCCCCCCCChHHHHHHhhcCCCCCceEEEEe
Q 036413          143 SDENKWLLVN-LQSPKEFTSHTLNRDTWADEAVSQTIRA-SNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVLVID  220 (346)
Q Consensus       143 k~~~K~LlV~-l~~~~~f~c~~lnRdvw~~~~V~~~i~~-~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~i~iid  220 (346)
                      +...+.+.|. +.++||..|..+.      +.+.++..+ .+..+..++.+        +...++..|++.++|++.|..
T Consensus       129 ~~~~~pv~I~~F~a~~C~~C~~~~------~~l~~l~~~~~~i~~~~vD~~--------~~~~~~~~~~V~~vPtl~i~~  194 (215)
T TIGR02187       129 QSLDEPVRIEVFVTPTCPYCPYAV------LMAHKFALANDKILGEMIEAN--------ENPDLAEKYGVMSVPKIVINK  194 (215)
T ss_pred             HhcCCCcEEEEEECCCCCCcHHHH------HHHHHHHHhcCceEEEEEeCC--------CCHHHHHHhCCccCCEEEEec
Confidence            3445665555 6889999999874      344444431 24556555555        235688899999999999864


Q ss_pred             CCCCceEEEEeCCCChHHHHHHHHH
Q 036413          221 PITGEKMRKWCGMVDPVSLLEDLLS  245 (346)
Q Consensus       221 p~tge~l~~~~G~~~~~~~i~~L~~  245 (346)
                        .|+.   +.|..+.++|.+.|..
T Consensus       195 --~~~~---~~G~~~~~~l~~~l~~  214 (215)
T TIGR02187       195 --GVEE---FVGAYPEEQFLEYILS  214 (215)
T ss_pred             --CCEE---EECCCCHHHHHHHHHh
Confidence              3543   7787777777766653

This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.

>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells

Probab=90.76  E-value=0.63  Score=37.71  Aligned_cols=73  Identities=16%  Similarity=0.241  Sum_probs=45.4

Q ss_pred             cCcEEEEEecCC-CCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChH-HHHH------------------
Q 036413          145 ENKWLLVNLQSP-KEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSE-CRKV------------------  204 (346)
Q Consensus       145 ~~K~LlV~l~~~-~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~e-g~~~------------------  204 (346)
                      .+||++|++... +|..|......+  ++...++ ++.++-++.+..+      +.+ ..++                  
T Consensus        24 ~gk~~vl~f~~~~~c~~c~~~l~~l--~~~~~~~-~~~~~~vi~is~d------~~~~~~~~~~~~~~~~~~~~D~~~~~   94 (124)
T PF00578_consen   24 KGKPVVLFFWPTAWCPFCQAELPEL--NELYKKY-KDKGVQVIGISTD------DPEEIKQFLEEYGLPFPVLSDPDGEL   94 (124)
T ss_dssp             TTSEEEEEEESTTTSHHHHHHHHHH--HHHHHHH-HTTTEEEEEEESS------SHHHHHHHHHHHTCSSEEEEETTSHH
T ss_pred             CCCcEEEEEeCccCccccccchhHH--HHHhhhh-ccceEEeeecccc------cccchhhhhhhhccccccccCcchHH
Confidence            679999999887 999997664321  1122222 2257888888777      443 3333                  


Q ss_pred             HhhcCCC------CCceEEEEeCCCCceE
Q 036413          205 CGYYKLD------SLPVVLVIDPITGEKM  227 (346)
Q Consensus       205 ~~~y~~~------~~P~i~iidp~tge~l  227 (346)
                      +..|++.      .+|.+.|||+ .|...
T Consensus        95 ~~~~~~~~~~~~~~~p~~~lid~-~g~I~  122 (124)
T PF00578_consen   95 AKAFGIEDEKDTLALPAVFLIDP-DGKIR  122 (124)
T ss_dssp             HHHTTCEETTTSEESEEEEEEET-TSBEE
T ss_pred             HHHcCCccccCCceEeEEEEECC-CCEEE
Confidence            3445554      6788888886 46544

Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....

>KOG4351 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.50  E-value=0.037  Score=51.27  Aligned_cols=45  Identities=27%  Similarity=0.421  Sum_probs=38.2

Q ss_pred             hhHHHHHHhhhcccCCC-CH-HHHHHHHHHcCCCHHHHHHHHhhcCC
Q 036413            8 KQRKRVISSFLEITNGQ-TE-ETALKILNATNWNLDKAILRFNNNSN   52 (346)
Q Consensus         8 ~~~~~~i~~F~~iTt~~-~~-~~A~~~L~~~~wdle~Av~~f~~~~~   52 (346)
                      .++..+|.+|..++..+ .+ .-|+.||++.||||..|++.||+.+.
T Consensus        21 ~dr~~Li~qf~~lm~~qm~P~~~aaF~Ld~knW~lqna~sv~~d~~t   67 (244)
T KOG4351|consen   21 TDRPELIHQFQRLMNTQMNPMLSAAFVLDMKNWNLQNAGSVYWDQDT   67 (244)
T ss_pred             CCcHHHHHHHHHHhhhccCcccccceeeeccceeccccccEEEcCCC
Confidence            57889999999985433 34 78999999999999999999999765

>PTZ00137 2-Cys peroxiredoxin; Provisional

Probab=90.06  E-value=1.1  Score=42.78  Aligned_cols=97  Identities=12%  Similarity=0.016  Sum_probs=59.4

Q ss_pred             cCcEEEEEec-CCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCC--C----C--------CC------ChHHHH
Q 036413          145 ENKWLLVNLQ-SPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDD--D----D--------DD------DSECRK  203 (346)
Q Consensus       145 ~~K~LlV~l~-~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~--~----~--------~~------~~eg~~  203 (346)
                      .+||++++++ ..+|+.|..=-..+  ++...+|-+ .++.+++++.+.-  +    +        ..      +.....
T Consensus        97 kgk~vVL~FyPa~ftpvCt~El~~l--~~~~~ef~~-~gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~  173 (261)
T PTZ00137         97 KDSYGLLVFYPLDFTFVCPSELLGF--SERLKEFEE-RGVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISRE  173 (261)
T ss_pred             CCCeEEEEEECCCCCCCCHHHHHHH--HHHHHHHHH-CCCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChH
Confidence            5789999998 68999997632221  233344444 6777788777610  0    0        00      001245


Q ss_pred             HHhhcCCC-----CCceEEEEeCCCCceEEEEeC----CCChHHHHHHHHH
Q 036413          204 VCGYYKLD-----SLPVVLVIDPITGEKMRKWCG----MVDPVSLLEDLLS  245 (346)
Q Consensus       204 ~~~~y~~~-----~~P~i~iidp~tge~l~~~~G----~~~~~~~i~~L~~  245 (346)
                      ++..|++.     ..|.+.|||| .|.....+..    --+.++++..|..
T Consensus       174 iakayGv~~~~g~a~R~tFIID~-dG~I~~~~~~~~~~gr~v~eiLr~l~a  223 (261)
T PTZ00137        174 VSKSFGLLRDEGFSHRASVLVDK-AGVVKHVAVYDLGLGRSVDETLRLFDA  223 (261)
T ss_pred             HHHHcCCCCcCCceecEEEEECC-CCEEEEEEEeCCCCCCCHHHHHHHHHH
Confidence            66777763     5899999998 5887766521    1366777766653

>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]

Probab=89.56  E-value=0.56  Score=45.62  Aligned_cols=89  Identities=19%  Similarity=0.303  Sum_probs=62.3

Q ss_pred             CcEEEEEecCCCCccccccccccCC--CHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCCCCceEEEEeCCC
Q 036413          146 NKWLLVNLQSPKEFTSHTLNRDTWA--DEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVLVIDPIT  223 (346)
Q Consensus       146 ~K~LlV~l~~~~~f~c~~lnRdvw~--~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~i~iidp~t  223 (346)
                      +..++|++...||.=+|+|. -++.  ...+++-.- ++=|.|+- ++      ..--..+++.|.+.+||++=|+-  +
T Consensus        13 ~elvfv~FyAdWCrFSq~L~-piF~EAa~~~~~e~P-~~kvvwg~-VD------cd~e~~ia~ky~I~KyPTlKvfr--n   81 (375)
T KOG0912|consen   13 NELVFVNFYADWCRFSQMLK-PIFEEAAAKFKQEFP-EGKVVWGK-VD------CDKEDDIADKYHINKYPTLKVFR--N   81 (375)
T ss_pred             ceEEeeeeehhhchHHHHHh-HHHHHHHHHHHHhCC-CcceEEEE-cc------cchhhHHhhhhccccCceeeeee--c
Confidence            67899999999999999984 3331  222333333 35578873 55      33345688999999999999986  6


Q ss_pred             CceEEE-EeCCCChHHHHHHHHH
Q 036413          224 GEKMRK-WCGMVDPVSLLEDLLS  245 (346)
Q Consensus       224 ge~l~~-~~G~~~~~~~i~~L~~  245 (346)
                      |+++++ ..|.-+++.|++-+..
T Consensus        82 G~~~~rEYRg~RsVeaL~efi~k  104 (375)
T KOG0912|consen   82 GEMMKREYRGQRSVEALIEFIEK  104 (375)
T ss_pred             cchhhhhhccchhHHHHHHHHHH
Confidence            999984 6677777666655443

>PRK13189 peroxiredoxin; Provisional

Probab=88.69  E-value=1.9  Score=39.96  Aligned_cols=91  Identities=12%  Similarity=0.032  Sum_probs=54.2

Q ss_pred             cCcEEEEEe-cCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChH-----------------------
Q 036413          145 ENKWLLVNL-QSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSE-----------------------  200 (346)
Q Consensus       145 ~~K~LlV~l-~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~e-----------------------  200 (346)
                      .+||+++.. =..+|+.|..--..+  +....+|-+ .|+.+++++++      +..                       
T Consensus        34 ~Gk~vvL~f~pa~fcpvC~tEl~~l--~~~~~ef~~-~~v~VigvS~D------~~~~h~aw~~~~~~~~g~~i~fPlls  104 (222)
T PRK13189         34 KGKWFVLFSHPADFTPVCTTEFVAF--QKRYDEFRE-LNTELIGLSID------QVFSHIKWVEWIKEKLGVEIEFPIIA  104 (222)
T ss_pred             CCCeEEEEEeCCCCCCCCHHHHHHH--HHHHHHHHH-cCCEEEEEECC------CHHHHHHHHHhHHHhcCcCcceeEEE
Confidence            578887655 467899997532221  233344444 67777777766      221                       


Q ss_pred             --HHHHHhhcCCC-------CCceEEEEeCCCCceEEEEeCC----CChHHHHHHHHH
Q 036413          201 --CRKVCGYYKLD-------SLPVVLVIDPITGEKMRKWCGM----VDPVSLLEDLLS  245 (346)
Q Consensus       201 --g~~~~~~y~~~-------~~P~i~iidp~tge~l~~~~G~----~~~~~~i~~L~~  245 (346)
                        ...+++.|++.       ..|.+.|||| .|.....+.+.    .+.++++..|..
T Consensus       105 D~~~~ia~~ygv~~~~~~~~~~r~tfIID~-~G~Ir~~~~~~~~~gr~~~eilr~l~a  161 (222)
T PRK13189        105 DDRGEIAKKLGMISPGKGTNTVRAVFIIDP-KGIIRAILYYPQEVGRNMDEILRLVKA  161 (222)
T ss_pred             cCccHHHHHhCCCccccCCCceeEEEEECC-CCeEEEEEecCCCCCCCHHHHHHHHHH
Confidence              13455666653       4799999998 58766554332    245666665543

>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=88.57  E-value=2  Score=42.79  Aligned_cols=96  Identities=22%  Similarity=0.297  Sum_probs=70.4

Q ss_pred             HHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCCCCceEEEE
Q 036413          140 DVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVLVI  219 (346)
Q Consensus       140 ~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~i~ii  219 (346)
                      ......++..+|.+..+||..|+.|-. +|.  .+...++ .  +.....++      -.+-..+|+.|++..||++.+.
T Consensus        41 ~~~~~~~~~~~v~fyapwc~~c~~l~~-~~~--~~~~~l~-~--~~~~~~vd------~~~~~~~~~~y~i~gfPtl~~f  108 (383)
T KOG0191|consen   41 DFLLKDDSPWLVEFYAPWCGHCKKLAP-TYK--KLAKALK-G--KVKIGAVD------CDEHKDLCEKYGIQGFPTLKVF  108 (383)
T ss_pred             HHhhccCCceEEEEECCCCcchhhhch-HHH--HHHHHhc-C--ceEEEEeC------chhhHHHHHhcCCccCcEEEEE
Confidence            444566788899999999999999943 333  5666677 5  55556677      7788999999999999999999


Q ss_pred             eCCCCceEEEEeCCCChHHHHHHHHHHHHc
Q 036413          220 DPITGEKMRKWCGMVDPVSLLEDLLSFMES  249 (346)
Q Consensus       220 dp~tge~l~~~~G~~~~~~~i~~L~~fl~~  249 (346)
                      .|  |.......|..+.+.+.+.+...++.
T Consensus       109 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (383)
T KOG0191|consen  109 RP--GKKPIDYSGPRNAESLAEFLIKELEP  136 (383)
T ss_pred             cC--CCceeeccCcccHHHHHHHHHHhhcc
Confidence            97  34444556766666666655555543

>TIGR00264 alpha-NAC-related protein

Probab=88.55  E-value=0.65  Score=38.90  Aligned_cols=34  Identities=21%  Similarity=0.245  Sum_probs=30.0

Q ss_pred             HHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHH
Q 036413           11 KRVISSFLEITNGQTEETALKILNATNWNLDKAIL   45 (346)
Q Consensus        11 ~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~   45 (346)
                      .+.|.-.++- ||+|.+.|+..|+.|||||-.||-
T Consensus        79 ~eDI~lV~eq-~gvs~e~A~~AL~~~~gDl~~AI~  112 (116)
T TIGR00264        79 EDDIELVMKQ-CNVSKEEARRALEECGGDLAEAIM  112 (116)
T ss_pred             HHHHHHHHHH-hCcCHHHHHHHHHHcCCCHHHHHH
Confidence            4566677787 899999999999999999999986

This hypothetical protein is found so far only in the Archaea. Its C-terminal domain of about 40 amino acids is homologous to the C-termini of the nascent polypeptide-associated complex alpha chain (alpha-NAC) and its yeast ortholog Egd2p and to the huntingtin-interacting protein HYPK. It shows weaker similarity, possibly through shared structural constraints rather than through homology, with the amino-terminal domain of elongation factor Ts. Alpha-NAC plays a role in preventing nascent polypeptides from binding inappropriately to membrane-targeting apparatus during translation, but is also active as a transcription regulator.

>PRK13190 putative peroxiredoxin; Provisional

Probab=88.38  E-value=3.8  Score=37.20  Aligned_cols=97  Identities=12%  Similarity=0.031  Sum_probs=55.0

Q ss_pred             cCcEEEEE-ecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCC------------C-C-------ChHHHH
Q 036413          145 ENKWLLVN-LQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDD------------D-D-------DSECRK  203 (346)
Q Consensus       145 ~~K~LlV~-l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~------------~-~-------~~eg~~  203 (346)
                      .+||++|+ .-..+|+.|..--..+  .+...+|=+ .++.+++++.+....            . .       ++ ...
T Consensus        26 ~gk~vvL~~~p~~~cp~C~~El~~l--~~~~~~f~~-~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~-~~~  101 (202)
T PRK13190         26 KGKWVLLFSHPADFTPVCTTEFIAF--SRRYEDFKK-LGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADI-DKE  101 (202)
T ss_pred             CCCEEEEEEEcCCCCCCCHHHHHHH--HHHHHHHHH-CCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECC-ChH
Confidence            57898875 5567899986432211  122223333 567777776661000            0 0       11 134


Q ss_pred             HHhhcCCC------CCceEEEEeCCCCceEEEE----eCCCChHHHHHHHHHH
Q 036413          204 VCGYYKLD------SLPVVLVIDPITGEKMRKW----CGMVDPVSLLEDLLSF  246 (346)
Q Consensus       204 ~~~~y~~~------~~P~i~iidp~tge~l~~~----~G~~~~~~~i~~L~~f  246 (346)
                      ++..|++.      .+|.+.|||| .|....+.    .+-.+.++++..|...
T Consensus       102 ia~~ygv~~~~~g~~~p~~fiId~-~G~I~~~~~~~~~~gr~~~ellr~l~~l  153 (202)
T PRK13190        102 LAREYNLIDENSGATVRGVFIIDP-NQIVRWMIYYPAETGRNIDEIIRITKAL  153 (202)
T ss_pred             HHHHcCCccccCCcEEeEEEEECC-CCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence            55667763      4899999998 47655443    2224777777777653

>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified

Probab=87.85  E-value=2.7  Score=34.75  Aligned_cols=79  Identities=13%  Similarity=0.072  Sum_probs=46.2

Q ss_pred             cCcEEEEEec-CCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChH-HH-------------------H
Q 036413          145 ENKWLLVNLQ-SPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSE-CR-------------------K  203 (346)
Q Consensus       145 ~~K~LlV~l~-~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~e-g~-------------------~  203 (346)
                      .+|+++|++- +.+|..|...-+.+  +....++=. .++.|+.+..+      +++ ..                   .
T Consensus        21 ~gk~~ll~f~~~~~c~~C~~~~~~l--~~~~~~~~~-~~~~~i~is~d------~~~~~~~~~~~~~~~~~~~l~D~~~~   91 (140)
T cd02971          21 KGKWVVLFFYPKDFTPVCTTELCAF--RDLAEEFAK-GGAEVLGVSVD------SPFSHKAWAEKEGGLNFPLLSDPDGE   91 (140)
T ss_pred             CCCeEEEEEeCCCCCCcCHHHHHHH--HHHHHHHHH-CCCEEEEEeCC------CHHHHHHHHhcccCCCceEEECCChH
Confidence            4677777765 67888886543332  122222223 56777777665      222 23                   3


Q ss_pred             HHhhcCCCCC---------ceEEEEeCCCCceEEEEeCC
Q 036413          204 VCGYYKLDSL---------PVVLVIDPITGEKMRKWCGM  233 (346)
Q Consensus       204 ~~~~y~~~~~---------P~i~iidp~tge~l~~~~G~  233 (346)
                      +...|++...         |++.|||+ +|+.+.++.|.
T Consensus        92 ~~~~~g~~~~~~~~~~~~~p~~~lid~-~g~i~~~~~~~  129 (140)
T cd02971          92 FAKAYGVLIEKSAGGGLAARATFIIDP-DGKIRYVEVEP  129 (140)
T ss_pred             HHHHcCCccccccccCceeEEEEEECC-CCcEEEEEecC
Confidence            3344444333         47888996 68888888774

PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a

>PTZ00256 glutathione peroxidase; Provisional

Probab=87.80  E-value=5.5  Score=35.42  Aligned_cols=37  Identities=19%  Similarity=0.477  Sum_probs=29.0

Q ss_pred             CCCCce---EEEEeCCCCceEEEEeCCCChHHHHHHHHHHH
Q 036413          210 LDSLPV---VLVIDPITGEKMRKWCGMVDPVSLLEDLLSFM  247 (346)
Q Consensus       210 ~~~~P~---i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl  247 (346)
                      +..+|+   ..|||+ .|..+.++.|.++++.+.+.|.+.+
T Consensus       142 ~~~iP~~~~tflID~-~G~Iv~~~~g~~~~~~l~~~I~~ll  181 (183)
T PTZ00256        142 ARQIPWNFAKFLIDG-QGKVVKYFSPKVNPNEMIQDIEKLL  181 (183)
T ss_pred             CcccCcceEEEEECC-CCCEEEEECCCCCHHHHHHHHHHHh
Confidence            345684   589996 6999999999888888877777665

>PRK06369 nac nascent polypeptide-associated complex protein; Reviewed

Probab=87.63  E-value=0.78  Score=38.40  Aligned_cols=36  Identities=36%  Similarity=0.398  Sum_probs=31.6

Q ss_pred             HHHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHH
Q 036413           10 RKRVISSFLEITNGQTEETALKILNATNWNLDKAILR   46 (346)
Q Consensus        10 ~~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~   46 (346)
                      .++.|.-.++- ||+|.+.|+..|+.|||||-.||-.
T Consensus        76 ~~edI~lv~~q-~gvs~~~A~~AL~~~~gDl~~AI~~  111 (115)
T PRK06369         76 PEEDIELVAEQ-TGVSEEEARKALEEANGDLAEAILK  111 (115)
T ss_pred             CHHHHHHHHHH-HCcCHHHHHHHHHHcCCcHHHHHHH
Confidence            45667778888 9999999999999999999999974

>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold

Probab=87.11  E-value=2.4  Score=35.23  Aligned_cols=44  Identities=14%  Similarity=0.006  Sum_probs=27.1

Q ss_pred             cCcEEEEEecCCCCcc-ccccccccCCCHHHHHHhccC---cEEEEEeecC
Q 036413          145 ENKWLLVNLQSPKEFT-SHTLNRDTWADEAVSQTIRAS---NFIFWQVYDD  191 (346)
Q Consensus       145 ~~K~LlV~l~~~~~f~-c~~lnRdvw~~~~V~~~i~~~---nFVfw~~~~~  191 (346)
                      .+||++|++..++|.. |...-+.+   ..+.+-+++.   ++.++.++.+
T Consensus        21 ~gk~~vl~f~~~~C~~~C~~~l~~l---~~~~~~~~~~~~~~v~~v~vs~d   68 (142)
T cd02968          21 KGKPVLVYFGYTHCPDVCPTTLANL---AQALKQLGADGGDDVQVVFISVD   68 (142)
T ss_pred             CCCEEEEEEEcCCCcccCHHHHHHH---HHHHHHhhHhhcCceEEEEEEEC
Confidence            5799999999999986 87543332   2222223312   3767666654

Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti

>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A

Probab=86.67  E-value=3.3  Score=35.82  Aligned_cols=59  Identities=20%  Similarity=0.405  Sum_probs=37.7

Q ss_pred             HHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCC--CCceEEEEeCCCCceEEEEeCCCChHHHHH
Q 036413          174 VSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLD--SLPVVLVIDPITGEKMRKWCGMVDPVSLLE  241 (346)
Q Consensus       174 V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~--~~P~i~iidp~tge~l~~~~G~~~~~~~i~  241 (346)
                      +..-.+ .+++|.-++.+        ...+++..|+++  .+|.++|+++.+++.-....|.++++.+..
T Consensus       120 ~a~~~~-~~~~f~~~d~~--------~~~~~~~~~~i~~~~~P~~vi~~~~~~~~~~~~~~~~~~~~i~~  180 (184)
T PF13848_consen  120 IAKKFK-GKINFVYVDAD--------DFPRLLKYFGIDEDDLPALVIFDSNKGKYYYLPEGEITPESIEK  180 (184)
T ss_dssp             HHHCTT-TTSEEEEEETT--------TTHHHHHHTTTTTSSSSEEEEEETTTSEEEE--SSCGCHHHHHH
T ss_pred             HHHhcC-CeEEEEEeehH--------HhHHHHHHcCCCCccCCEEEEEECCCCcEEcCCCCCCCHHHHHH
Confidence            333335 66666655544        235588889886  899999999887764333477777754433

...

>PRK13191 putative peroxiredoxin; Provisional

Probab=86.66  E-value=3.4  Score=38.10  Aligned_cols=91  Identities=10%  Similarity=0.061  Sum_probs=57.2

Q ss_pred             cCcEEEE-EecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHH----------------------
Q 036413          145 ENKWLLV-NLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSEC----------------------  201 (346)
Q Consensus       145 ~~K~LlV-~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg----------------------  201 (346)
                      .+||++| +.-..+|+.|..--..+  ++...+|-+ .|+.+++++++      +...                      
T Consensus        32 ~GK~vvLff~pa~ftpvC~tEl~~l--~~~~~ef~~-~g~~VigvS~D------s~~~h~aw~~~~~~~~~~~i~fPlls  102 (215)
T PRK13191         32 KGRWFVLFSHPGDFTPVCTTEFYSF--AKKYEEFKK-LNTELIGLSVD------SNISHIEWVMWIEKNLKVEVPFPIIA  102 (215)
T ss_pred             CCCcEEEEEeCCCCCCcCHHHHHHH--HHHHHHHHH-CCCEEEEEECC------CHHHHHHHHhhHHHhcCCCCceEEEE
Confidence            5789887 45567899987643222  334445555 77888888877      3332                      


Q ss_pred             ---HHHHhhcCCC-------CCceEEEEeCCCCceEEEEeCC----CChHHHHHHHHH
Q 036413          202 ---RKVCGYYKLD-------SLPVVLVIDPITGEKMRKWCGM----VDPVSLLEDLLS  245 (346)
Q Consensus       202 ---~~~~~~y~~~-------~~P~i~iidp~tge~l~~~~G~----~~~~~~i~~L~~  245 (346)
                         ..+++.|++-       ..|.+.|||| .|.....+.+.    -+.++++..|..
T Consensus       103 D~~~~ia~~ygv~~~~~~~~~~r~tfIID~-~G~Ir~~~~~~~~~gr~~~eilr~l~a  159 (215)
T PRK13191        103 DPMGNVAKRLGMIHAESSTATVRAVFIVDD-KGTVRLILYYPMEIGRNIDEILRAIRA  159 (215)
T ss_pred             CCchHHHHHcCCcccccCCceeEEEEEECC-CCEEEEEEecCCCCCCCHHHHHHHHHH
Confidence               2455566651       3699999998 57766654332    256777766654

>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides

Probab=86.47  E-value=5  Score=31.64  Aligned_cols=79  Identities=13%  Similarity=0.060  Sum_probs=48.3

Q ss_pred             hhcCcEEEE-EecCCCCccccccccccCCCHHHHHHhcc-CcEEEEEeecCCCCCCCChHHHHHHhhcCCCCCceEEEEe
Q 036413          143 SDENKWLLV-NLQSPKEFTSHTLNRDTWADEAVSQTIRA-SNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVLVID  220 (346)
Q Consensus       143 k~~~K~LlV-~l~~~~~f~c~~lnRdvw~~~~V~~~i~~-~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~i~iid  220 (346)
                      ++-++.+=+ -+.+++|..|..+.+      .+.++... .++-+..++.+      .  -...+..|++.+.|++.| |
T Consensus         8 ~~l~~pv~i~~F~~~~C~~C~~~~~------~~~~l~~~~~~i~~~~vd~~------~--~~e~a~~~~V~~vPt~vi-d   72 (89)
T cd03026           8 RRLNGPINFETYVSLSCHNCPDVVQ------ALNLMAVLNPNIEHEMIDGA------L--FQDEVEERGIMSVPAIFL-N   72 (89)
T ss_pred             HhcCCCEEEEEEECCCCCCcHHHHH------HHHHHHHHCCCceEEEEEhH------h--CHHHHHHcCCccCCEEEE-C
Confidence            334444333 235688999987632      22333330 35666666655      2  256788999999999964 3


Q ss_pred             CCCCceEEEEeCCCChHHHHH
Q 036413          221 PITGEKMRKWCGMVDPVSLLE  241 (346)
Q Consensus       221 p~tge~l~~~~G~~~~~~~i~  241 (346)
                         |+.+.  .|..+.++++.
T Consensus        73 ---G~~~~--~G~~~~~e~~~   88 (89)
T cd03026          73 ---GELFG--FGRMTLEEILA   88 (89)
T ss_pred             ---CEEEE--eCCCCHHHHhh
Confidence               76543  58777777653

AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.

>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626

Probab=86.24  E-value=6.9  Score=35.39  Aligned_cols=93  Identities=16%  Similarity=0.150  Sum_probs=57.6

Q ss_pred             cCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEE------EEeecCCCC--------------CCC-------
Q 036413          145 ENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIF------WQVYDDDDD--------------DDD-------  197 (346)
Q Consensus       145 ~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVf------w~~~~~~~~--------------~~~-------  197 (346)
                      .+|-.|||.=..||.+|.+=      .|.+.++=. .+|-+      .+++.++..              +..       
T Consensus        58 ~GKV~lvn~~Aswc~~c~~e------~P~l~~l~~-~~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vl  130 (184)
T TIGR01626        58 AGKVRVVHHIAGRTSAKEXN------ASLIDAIKA-AKFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVV  130 (184)
T ss_pred             CCCEEEEEEEecCCChhhcc------chHHHHHHH-cCCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEE
Confidence            37777888888888887542      344444433 56666      666655100              000       


Q ss_pred             -ChHHHHHHhhcCCCCCceE-EEEeCCCCceEEEEeCCCChHHHHHHHHHHH
Q 036413          198 -DSECRKVCGYYKLDSLPVV-LVIDPITGEKMRKWCGMVDPVSLLEDLLSFM  247 (346)
Q Consensus       198 -~~eg~~~~~~y~~~~~P~i-~iidp~tge~l~~~~G~~~~~~~i~~L~~fl  247 (346)
                       +.+| .+...|++..+|.. .|||+ .|+.+.+..|.++.+++-. +...+
T Consensus       131 lD~~g-~v~~~~gv~~~P~T~fVIDk-~GkVv~~~~G~l~~ee~e~-~~~li  179 (184)
T TIGR01626       131 LDDKG-AVKNAWQLNSEDSAIIVLDK-TGKVKFVKEGALSDSDIQT-VISLV  179 (184)
T ss_pred             ECCcc-hHHHhcCCCCCCceEEEECC-CCcEEEEEeCCCCHHHHHH-HHHHH
Confidence             1122 24457778889777 89996 7999999999888776633 44433

This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.

>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]

Probab=85.26  E-value=1.1  Score=46.70  Aligned_cols=44  Identities=20%  Similarity=0.344  Sum_probs=40.1

Q ss_pred             hHHHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhhcCCC
Q 036413            9 QRKRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNNNSNN   53 (346)
Q Consensus         9 ~~~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~~~~~   53 (346)
                      ..+++|..|++. ||-..+-+..+||.+|||.|.|+++|-+....
T Consensus       534 ~~~e~l~~~~~~-tGln~~~s~~c~e~~nWdy~~A~k~F~~~ks~  577 (585)
T KOG3763|consen  534 VTDEKLLKFQEE-TGLNSEWSTMCLEQNNWDYERALKLFIELKSD  577 (585)
T ss_pred             hHHHHHHHHHHH-hcCChHHHHHHHHHccCCHHHHHHHHHHhhcC
Confidence            457899999999 99999999999999999999999999987643

>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]

Probab=85.21  E-value=2.3  Score=44.03  Aligned_cols=96  Identities=15%  Similarity=0.270  Sum_probs=67.7

Q ss_pred             ccccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHH--HHHHhccC--cEEEEEeecCCCCCCCChHHHHHH
Q 036413          130 MFNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEA--VSQTIRAS--NFIFWQVYDDDDDDDDDSECRKVC  205 (346)
Q Consensus       130 ~~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~--V~~~i~~~--nFVfw~~~~~~~~~~~~~eg~~~~  205 (346)
                      +-..+|++.+    ..+.++||-+..+||--|+.|     .-+-  -.+.|.+.  .--+-.+|.+        +-..+|
T Consensus        30 Lt~dnf~~~i----~~~~~vlVeFYAPWCghck~L-----aPey~kAA~~Lke~~s~i~LakVDat--------~~~~~~   92 (493)
T KOG0190|consen   30 LTKDNFKETI----NGHEFVLVEFYAPWCGHCKAL-----APEYEKAATELKEEGSPVKLAKVDAT--------EESDLA   92 (493)
T ss_pred             EecccHHHHh----ccCceEEEEEEchhhhhhhhh-----CcHHHHHHHHhhccCCCceeEEeecc--------hhhhhH
Confidence            4466787766    468999999999999999999     3332  23344412  4445555444        338999


Q ss_pred             hhcCCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHH
Q 036413          206 GYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLL  244 (346)
Q Consensus       206 ~~y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~  244 (346)
                      +.|.+..||++-|.-  +|.+.....|.-+.+.++.-|.
T Consensus        93 ~~y~v~gyPTlkiFr--nG~~~~~Y~G~r~adgIv~wl~  129 (493)
T KOG0190|consen   93 SKYEVRGYPTLKIFR--NGRSAQDYNGPREADGIVKWLK  129 (493)
T ss_pred             hhhcCCCCCeEEEEe--cCCcceeccCcccHHHHHHHHH
Confidence            999999999999986  6887566678666665554443

>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold

Probab=85.03  E-value=1.5  Score=29.29  Aligned_cols=63  Identities=22%  Similarity=0.245  Sum_probs=41.9

Q ss_pred             EEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCCCCceEEEEeCC
Q 036413          150 LVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVLVIDPI  222 (346)
Q Consensus       150 lV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~i~iidp~  222 (346)
                      |+.+++.+|..|+.+.. ++..-   .+.+ .++.+..++.+.     ..+-......+++..+|.+.++++.
T Consensus         1 l~~~~~~~c~~c~~~~~-~~~~~---~~~~-~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~P~~~~~~~~   63 (69)
T cd01659           1 LVLFYAPWCPFCQALRP-VLAEL---ALLN-KGVKFEAVDVDE-----DPALEKELKRYGVGGVPTLVVFGPG   63 (69)
T ss_pred             CEEEECCCChhHHhhhh-HHHHH---HhhC-CCcEEEEEEcCC-----ChHHhhHHHhCCCccccEEEEEeCC
Confidence            35666778888888743 22221   4566 889999998882     2222222356888899999999963

Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.

>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway

Probab=83.86  E-value=0.69  Score=36.11  Aligned_cols=51  Identities=20%  Similarity=0.273  Sum_probs=24.0

Q ss_pred             EEEEEcCCC-ccc-------------------c-CCcceEEecCCCCCCCCccCCcccchhhcCCCceeEEEE
Q 036413          293 RIGVRLPDG-QEA-------------------N-QTRQFRLTRPDPGAPKPLDYNSKMTFQESGLNNSVILVT  344 (346)
Q Consensus       293 rIqiRlpdG-~ri-------------------~-~~~~f~l~~~~P~~~~~l~~~~d~TieeagL~n~~vl~~  344 (346)
                      =|+||-||| .||                   . ....|.|-..-.+ ...+..+.+.|+.++||+++.+++.
T Consensus         6 ilRvrS~dG~~Rie~~~~~t~~~L~~kI~~~l~~~~~~~~L~~~~~~-~~~l~s~~~~tl~~lglkHGdmlyL   77 (80)
T PF11543_consen    6 ILRVRSKDGMKRIEVSPSSTLSDLKEKISEQLSIPDSSQSLSKDRNN-KEELKSSDSKTLSSLGLKHGDMLYL   77 (80)
T ss_dssp             EEEEE-SSEEEEEEE-TTSBHHHHHHHHHHHS---TTT---BSSGGG-GGCSSS-TT-CCCCT---TT-EEE-
T ss_pred             EEEEECCCCCEEEEcCCcccHHHHHHHHHHHcCCCCcceEEEecCCC-CcccccCCcCCHHHcCCCCccEEEE
Confidence            489999999 466                   0 1235555443221 1234345678999999998887764

Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.

>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=83.02  E-value=6.3  Score=33.38  Aligned_cols=68  Identities=10%  Similarity=0.078  Sum_probs=45.0

Q ss_pred             HHHHHhccCc-EEEEEeecCCCCCCCChHHHHHHhhcCCC--CCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHHc
Q 036413          173 AVSQTIRASN-FIFWQVYDDDDDDDDDSECRKVCGYYKLD--SLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMES  249 (346)
Q Consensus       173 ~V~~~i~~~n-FVfw~~~~~~~~~~~~~eg~~~~~~y~~~--~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~~  249 (346)
                      .|.+-.+ .. +.|.-++.+      ...  .+...+++.  .||.++++++..| +.....|.++.+.+.+-+..|++.
T Consensus        48 ~vAk~~k-gk~i~Fv~vd~~------~~~--~~~~~fgl~~~~~P~v~i~~~~~~-KY~~~~~~~t~e~i~~Fv~~~l~G  117 (130)
T cd02983          48 SVAEKFK-KKPWGWLWTEAG------AQL--DLEEALNIGGFGYPAMVAINFRKM-KFATLKGSFSEDGINEFLRELSYG  117 (130)
T ss_pred             HHHHHhc-CCcEEEEEEeCc------ccH--HHHHHcCCCccCCCEEEEEecccC-ccccccCccCHHHHHHHHHHHHcC
Confidence            3333344 45 555555555      222  288888984  5999999998655 555567888888777777777654


Q ss_pred             C
Q 036413          250 G  250 (346)
Q Consensus       250 ~  250 (346)
                      .
T Consensus       118 k  118 (130)
T cd02983         118 R  118 (130)
T ss_pred             C
Confidence            3

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.

>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin

Probab=82.96  E-value=5.7  Score=37.97  Aligned_cols=102  Identities=17%  Similarity=0.259  Sum_probs=68.5

Q ss_pred             CHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCCCC
Q 036413          134 SFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSL  213 (346)
Q Consensus       134 sf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~  213 (346)
                      .|-++...+ ...-|++|.|+.+....|..||.-+  ......|.. -.||=..+...          . ++..|+...+
T Consensus       135 ~~l~~ie~~-~~~~~VVVHiY~~~~~~C~~mn~~L--~~LA~kyp~-vKFvkI~a~~~----------~-~~~~f~~~~L  199 (265)
T PF02114_consen  135 EFLDAIEKE-SKSTWVVVHIYEPGFPRCEIMNSCL--ECLARKYPE-VKFVKIRASKC----------P-ASENFPDKNL  199 (265)
T ss_dssp             HHHHHCCTS-STT-EEEEEEE-TTSCCHHHHHHHH--HHHHHH-TT-SEEEEEEECGC----------C-TTTTS-TTC-
T ss_pred             hHHHHHhcc-CCCcEEEEEEEeCCCchHHHHHHHH--HHHHHhCCc-eEEEEEehhcc----------C-cccCCcccCC
Confidence            355555433 3357999999999999999998554  356667777 88876665332          1 5667888899


Q ss_pred             ceEEEEeCCCCceEEEEeCC---CChHHHHHHHHHHHHcCCc
Q 036413          214 PVVLVIDPITGEKMRKWCGM---VDPVSLLEDLLSFMESGPR  252 (346)
Q Consensus       214 P~i~iidp~tge~l~~~~G~---~~~~~~i~~L~~fl~~~~~  252 (346)
                      |+|+|.-  .|.++..+.|.   ..-+-+...|..||.++-.
T Consensus       200 PtllvYk--~G~l~~~~V~l~~~~g~df~~~dlE~~L~~~G~  239 (265)
T PF02114_consen  200 PTLLVYK--NGDLIGNFVGLTDLLGDDFFTEDLEAFLIEYGV  239 (265)
T ss_dssp             SEEEEEE--TTEEEEEECTGGGCT-TT--HHHHHHHHHTTTS
T ss_pred             CEEEEEE--CCEEEEeEEehHHhcCCCCCHHHHHHHHHHcCC
Confidence            9999998  59999888764   2334567789999987754

Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.

>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE

Probab=82.92  E-value=5.8  Score=33.24  Aligned_cols=31  Identities=26%  Similarity=0.299  Sum_probs=20.3

Q ss_pred             HHHHhhcCCC----C--CceEEEEeCCCCceEEEEeCC
Q 036413          202 RKVCGYYKLD----S--LPVVLVIDPITGEKMRKWCGM  233 (346)
Q Consensus       202 ~~~~~~y~~~----~--~P~i~iidp~tge~l~~~~G~  233 (346)
                      ..++..|++.    .  .|+..|||+ .|+....+.|.
T Consensus        97 ~~~~~~~g~~~~~~~~~~~~~~lid~-~G~v~~~~~~~  133 (149)
T cd03018          97 GEVAKAYGVFDEDLGVAERAVFVIDR-DGIIRYAWVSD  133 (149)
T ss_pred             hHHHHHhCCccccCCCccceEEEECC-CCEEEEEEecC
Confidence            3455556654    2  248899996 58888887763

AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.

>PRK13599 putative peroxiredoxin; Provisional

Probab=82.32  E-value=7.5  Score=35.84  Aligned_cols=90  Identities=14%  Similarity=0.062  Sum_probs=50.7

Q ss_pred             cCcEE-EEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChH-----------------------
Q 036413          145 ENKWL-LVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSE-----------------------  200 (346)
Q Consensus       145 ~~K~L-lV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~e-----------------------  200 (346)
                      .+||+ |++.=..+|+.|..--..+  +....+|-+ .++.+++++.+      +.+                       
T Consensus        27 ~Gk~vVL~~~pa~~tpvCt~El~~l--~~~~~~f~~-~gv~vigIS~D------~~~~~~~w~~~i~~~~~~~i~fPil~   97 (215)
T PRK13599         27 AGKWFVLFSHPADFTPVCTTEFVEF--ARKANDFKE-LNTELIGLSVD------QVFSHIKWVEWIKDNTNIAIPFPVIA   97 (215)
T ss_pred             CCCeEEEEEeCCCCCCcCHHHHHHH--HHHHHHHHH-CCCEEEEEeCC------CHHHHHHHHHhHHHhcCCCCceeEEE
Confidence            47786 4566667888886532111  112223333 56667777666      321                       


Q ss_pred             --HHHHHhhcCCC-------CCceEEEEeCCCCceEEEEeCC----CChHHHHHHHH
Q 036413          201 --CRKVCGYYKLD-------SLPVVLVIDPITGEKMRKWCGM----VDPVSLLEDLL  244 (346)
Q Consensus       201 --g~~~~~~y~~~-------~~P~i~iidp~tge~l~~~~G~----~~~~~~i~~L~  244 (346)
                        ...++..|++.       ..|.+.|||| .|.....+...    ...+++++.|.
T Consensus        98 D~~~~va~~yg~~~~~~~~~~~R~tfIID~-dG~Ir~~~~~p~~~gr~~~eilr~l~  153 (215)
T PRK13599         98 DDLGKVSNQLGMIHPGKGTNTVRAVFIVDD-KGTIRLIMYYPQEVGRNVDEILRALK  153 (215)
T ss_pred             CCCchHHHHcCCCccCCCCceeeEEEEECC-CCEEEEEEEcCCCCCCCHHHHHHHHH
Confidence              12455667652       5799999998 58766654321    24455555444

>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine

Probab=81.79  E-value=8  Score=35.05  Aligned_cols=88  Identities=14%  Similarity=0.072  Sum_probs=51.0

Q ss_pred             cEEEE-EecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChH-------------------------
Q 036413          147 KWLLV-NLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSE-------------------------  200 (346)
Q Consensus       147 K~LlV-~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~e-------------------------  200 (346)
                      ||++| +.-..+|+.|..--..+  ++...+|=+ .++.+++++.+      +.+                         
T Consensus        26 k~vvlf~~pa~~cp~C~~el~~l--~~~~~~f~~-~gv~vigvS~D------~~~~~~~~~~~i~~~~~~~~~fpil~D~   96 (203)
T cd03016          26 SWGILFSHPADFTPVCTTELGAF--AKLAPEFKK-RNVKLIGLSVD------SVESHIKWIEDIEEYTGVEIPFPIIADP   96 (203)
T ss_pred             CEEEEEEecCCCCCcCHHHHHHH--HHHHHHHHH-cCCEEEEEECC------CHHHHHHHHhhHHHhcCCCCceeEEECc
Confidence            78766 44557898886542221  122233333 67888888777      321                         


Q ss_pred             HHHHHhhcCCC--------CCceEEEEeCCCCceEEEEeCCC----ChHHHHHHHH
Q 036413          201 CRKVCGYYKLD--------SLPVVLVIDPITGEKMRKWCGMV----DPVSLLEDLL  244 (346)
Q Consensus       201 g~~~~~~y~~~--------~~P~i~iidp~tge~l~~~~G~~----~~~~~i~~L~  244 (346)
                      ...++..|++.        ..|.+.|||| .|.....+.+..    +.++++..|.
T Consensus        97 ~~~ia~~yg~~~~~~~~~~~~r~~fiID~-~G~I~~~~~~~~~~gr~~~ell~~l~  151 (203)
T cd03016          97 DREVAKLLGMIDPDAGSTLTVRAVFIIDP-DKKIRLILYYPATTGRNFDEILRVVD  151 (203)
T ss_pred             hHHHHHHcCCccccCCCCceeeEEEEECC-CCeEEEEEecCCCCCCCHHHHHHHHH
Confidence            23556667653        2457999998 487666665532    3455555553

They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an

>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx)

Probab=81.18  E-value=7.4  Score=32.49  Aligned_cols=81  Identities=15%  Similarity=0.071  Sum_probs=48.5

Q ss_pred             cCcEEEEEecCCC-CccccccccccCCCHHHHHHhcc-CcEEEEEeecCCCC---------C-CC-----ChHHHHHHhh
Q 036413          145 ENKWLLVNLQSPK-EFTSHTLNRDTWADEAVSQTIRA-SNFIFWQVYDDDDD---------D-DD-----DSECRKVCGY  207 (346)
Q Consensus       145 ~~K~LlV~l~~~~-~f~c~~lnRdvw~~~~V~~~i~~-~nFVfw~~~~~~~~---------~-~~-----~~eg~~~~~~  207 (346)
                      .+|+++|++...+ |..|..-      -+.+.++.++ .++.++.++.+...         + ..     +.....++..
T Consensus        25 ~gk~vvl~f~~~~~c~~C~~e------~~~l~~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~   98 (143)
T cd03014          25 AGKVKVISVFPSIDTPVCATQ------TKRFNKEAAKLDNTVVLTISADLPFAQKRWCGAEGVDNVTTLSDFRDHSFGKA   98 (143)
T ss_pred             CCCeEEEEEEcCCCCCcCHHH------HHHHHHHHHhcCCCEEEEEECCCHHHHHHHHHhcCCCCceEeecCcccHHHHH
Confidence            4789999998877 5777654      2333443330 26788888776100         0 00     0111345555


Q ss_pred             cCCC------CCceEEEEeCCCCceEEEEeC
Q 036413          208 YKLD------SLPVVLVIDPITGEKMRKWCG  232 (346)
Q Consensus       208 y~~~------~~P~i~iidp~tge~l~~~~G  232 (346)
                      |++.      ..|...|||+ .|..+..+.|
T Consensus        99 ~gv~~~~~~~~~~~~~iid~-~G~I~~~~~~  128 (143)
T cd03014          99 YGVLIKDLGLLARAVFVIDE-NGKVIYVELV  128 (143)
T ss_pred             hCCeeccCCccceEEEEEcC-CCeEEEEEEC
Confidence            6653      1588899996 5888887765

Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	346
2dlx_A	153	Solution Structure Of The Uas Domain Of Human Ubx D		4e-27

>pdb|2DLX|A Chain A, Solution Structure Of The Uas Domain Of Human Ubx Domain- Containing Protein 7 Length = 153

Iteration: 1
 Score =  118 bits (296), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 62/152 (40%), Positives = 88/152 (57%), Gaps = 10/152 (6%)
Query: 105 GSEEPSDXXXXXXXLASLYRPPVDLMFNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTL 164
           GS   S        LA L+RPP+DLM  GSFE AK+ G  +NKWL++N+Q+ ++F    L
Sbjct: 1   GSSGSSGIDKKLTTLADLFRPPIDLMHKGSFETAKECGQMQNKWLMINIQNVQDFACQCL 60
Query: 165 NRDTWADEAVSQTIRASNFIFWQVYXXXXXXXXXSECRKVCGYYKLDSLPVVLVIDPITG 224
           NRD W++EAV   IR  +FIFWQVY          E ++   +YKL   P V ++DP TG
Sbjct: 61  NRDVWSNEAVKNIIR-EHFIFWQVY------HDSEEGQRYIQFYKLGDFPYVSILDPRTG 113
Query: 225 EKMRKWCGMVDPVSLLEDLLSFMESGPRDQLE 256
           +K+ +W   +D  S L+ +  F+  G   QL+
Sbjct: 114 QKLVEW-HQLDVSSFLDQVTGFL--GEHGQLD 142

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	346
2dlx_A	153	UBX domain-containing protein 7; UAS domain, prote	4e-46
2ec4_A	178	FAS-associated factor 1; UAS domain, protein FAF1,	5e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
2cr5_A	109	Reproduction 8; UBX domain, D0H8S2298E protein, st	2e-04
3bq3_A	270	Defective in cullin neddylation protein 1; ubiquit	2e-04

>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24 Length = 153

 Score =  153 bits (387), Expect = 4e-46
 Identities = 62/158 (39%), Positives = 89/158 (56%), Gaps = 9/158 (5%)

Query: 105 GSEEPSDNKNNNNNLASLYRPPVDLMFNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTL 164
           GS   S        LA L+RPP+DLM  GSFE AK+ G  +NKWL++N+Q+ ++F    L
Sbjct: 1   GSSGSSGIDKKLTTLADLFRPPIDLMHKGSFETAKECGQMQNKWLMINIQNVQDFACQCL 60

Query: 165 NRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVLVIDPITG 224
           NRD W++EAV   IR  +FIFWQV        D  E ++   +YKL   P V ++DP TG
Sbjct: 61  NRDVWSNEAVKNIIR-EHFIFWQV------YHDSEEGQRYIQFYKLGDFPYVSILDPRTG 113

Query: 225 EKMRKWCGMVDPVSLLEDLLSFMES-GPRDQLERATKT 261
           +K+ +W  + D  S L+ +  F+   G  D L  ++  
Sbjct: 114 QKLVEWHQL-DVSSFLDQVTGFLGEHGQLDGLSSSSGP 150

>2ec4_A FAS-associated factor 1; UAS domain, protein FAF1, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 178

 Score = 51.3 bits (122), Expect = 5e-08
 Identities = 33/168 (19%), Positives = 56/168 (33%), Gaps = 18/168 (10%)

Query: 98  EDNSEVWGSEEPSDNKNN-NNNLASLYRPPVDLMFNGSFE----KAKDVGSDENKWLLVN 152
              S    +E   D         +S Y     + F GS E    +A  V + + K L + 
Sbjct: 2   SSGSSGENAENEGDALLQFTAEFSSRYGDCHPVFFIGSLEAAFQEAFYVKARDRKLLAIY 61

Query: 153 LQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQ--VYDDDDDDDDDSECRKVCGY--- 207
           L   +   ++         E++   +   NFI W   +  D +     + C +  G    
Sbjct: 62  LHHDESVLTNVFCSQMLCAESIVSYLSQ-NFITWAWDLTKDSNRARFLTMCNRHFGSVVA 120

Query: 208 -----YKLDSLPVVLVIDPITG--EKMRKWCGMVDPVSLLEDLLSFME 248
                 K D  P+ L+I       E +    G      L+  L++ ME
Sbjct: 121 QTIRTQKTDQFPLFLIIMGKRSSNEVLNVIQGNTTVDELMMRLMAAME 168

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.4 bits (109), Expect = 1e-05
 Identities = 51/331 (15%), Positives = 101/331 (30%), Gaps = 108/331 (32%)

Query: 1   MASRKQKKQRKRVISSF-LEITNGQTEETALKILNATNWNLDKAILRFNNNSNNIDEDEY 59
                 K Q K     F L + N  + ET L++L    + +D     + + S++    + 
Sbjct: 169 DVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDP---NWTSRSDHSSNIKL 225

Query: 60  EVEVDIEDEVRPPLPVVKDTLCYYPQYYQQKNP-----EVWESEDNSEVWGSEEPSD--- 111
            +   I+ E+R         L     Y   +N       V     N++ W      +   
Sbjct: 226 RIH-SIQAELR--------RLLKSKPY---ENCLLVLLNVQ----NAKAW---NAFNLSC 266

Query: 112 -------NKNNNNNLASLYRPPVDLM-FNGSFEKAKDVGSDEN-----KWLLVNLQS-PK 157
                   K   + L++     + L   + +         DE      K+L    Q  P+
Sbjct: 267 KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP------DEVKSLLLKYLDCRPQDLPR 320

Query: 158 E--------------FTSHTLNR-DTWAD---EAVSQTIRASNFIFWQVYDDDDDDDDDS 199
           E                   L   D W     + ++  I +S        +  +      
Sbjct: 321 EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS-------LNVLEPA---- 369

Query: 200 ECRKVCGYYKL----DSLPV---VLVIDPITGEKMRKWCGMV--DPVSLLEDL--LSFME 248
           E RK+  + +L     S  +   +L +          W  ++  D + ++  L   S +E
Sbjct: 370 EYRKM--FDRLSVFPPSAHIPTILLSL---------IWFDVIKSDVMVVVNKLHKYSLVE 418

Query: 249 SGPRD------QLERATKTQLPPYPPVHEQM 273
             P++       +    K +L     +H  +
Sbjct: 419 KQPKESTISIPSIYLELKVKLENEYALHRSI 449

>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2 Length = 109

 Score = 39.8 bits (93), Expect = 2e-04
 Identities = 16/88 (18%), Positives = 31/88 (35%), Gaps = 24/88 (27%)

Query: 277 PAVPEEPLQVARNLVCRIGVRLPDGQ---------------------EANQTRQFRLTRP 315
           P +PEEP + A   V  + +R P+G+                            +RL+  
Sbjct: 10  PDLPEEPSETAEE-VVTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKVGYHKSLYRLSTS 68

Query: 316 DPGAPKPLDYNSKMTFQESGLNNSVILV 343
            P   + L+     + ++ G+    +L 
Sbjct: 69  FP--RRALEVEGGSSLEDIGITVDTVLN 94

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	346
2dlx_A	153	UBX domain-containing protein 7; UAS domain, prote	99.97
2ec4_A	178	FAS-associated factor 1; UAS domain, protein FAF1,	99.97
2cr5_A	109	Reproduction 8; UBX domain, D0H8S2298E protein, st	99.41
3f9u_A	172	Putative exported cytochrome C biogenesis-related;	99.32
1v92_A	46	NSFL1 cofactor P47; 3-helix bundle, recombination;	99.3
3e21_A	45	HFAF1, FAS-associated factor 1; UBA, alternative s	99.28
2kuc_A	130	Putative disulphide-isomerase; structural genomics	99.26
2dal_A	62	Protein KIAA0794; FAS associted factor 1, UBA-like	99.23
2lst_A	130	Thioredoxin; structural genomics, NEW YORK structu	98.87
2ju5_A	154	Thioredoxin disulfide isomerase; protein, oxidored	99.19
2dam_A	67	ETEA protein; KIAA0887, UBA-like domain, structura	99.17
3ph9_A	151	Anterior gradient protein 3 homolog; thioredoxin f	99.15
1s3s_G	127	P47 protein; AAA ATPase, protein-protein complex,	99.14
3ira_A	173	Conserved protein; methanosarcina mazei,structural	99.06
2dzl_A	66	Protein FAM100B; UBA-like domain, structural genom	99.05
2dzk_A	109	UBX domain-containing protein 2; ubiquitin-like fo	99.05
3qx1_A	84	FAS-associated factor 1; UBX, protein binding, P97	99.04
3fk8_A	133	Disulphide isomerase; APC61824.1, xylella fastidio	99.0
2fwh_A	134	Thiol:disulfide interchange protein DSBD; thioredo	98.97
1wj4_A	124	KIAA0794 protein; UBX domain, beta-grAsp fold, str	98.88
2l57_A	126	Uncharacterized protein; structural genomics, unkn	98.66
1ep7_A	112	Thioredoxin CH1, H-type; electron transport; 2.10A	98.64
2dml_A	130	Protein disulfide-isomerase A6; thioredoxin domain	98.59
3zzx_A	105	Thioredoxin; oxidoreductase; 1.88A {Litopenaeus va	98.55
3qfa_C	116	Thioredoxin; protein-protein complex, rossmann fol	98.54
2vm1_A	118	Thioredoxin, thioredoxin H isoform 1.; oxidoreduct	98.53
1xfl_A	124	Thioredoxin H1; AT3G51030, structural genomics, pr	98.53
3tco_A	109	Thioredoxin (TRXA-1); disulfide oxidoreductase, ox	98.53
3dml_A	116	Putative uncharacterized protein; thioredoxin, oxi	98.51
1ti3_A	113	Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul	98.51
2voc_A	112	Thioredoxin; electron transport, homodimer, disulf	98.5
3gnj_A	111	Thioredoxin domain protein; APC92103, STR genomics	98.5
2vlu_A	122	Thioredoxin, thioredoxin H isoform 2.; oxidoreduct	98.5
1w4v_A	119	Thioredoxin, mitochondrial; antioxidant enzyme, mi	98.48
3die_A	106	Thioredoxin, TRX; electron transport, SWAP domain,	98.47
1thx_A	115	Thioredoxin, thioredoxin 2; oxido-reductase, elect	98.47
3d22_A	139	TRXH4, thioredoxin H-type; electron transport, cyt	98.47
1dby_A	107	Chloroplast thioredoxin M CH2; thioredoxin CH2, ch	98.46
2i4a_A	107	Thioredoxin; acidophIle, disulfide exchange, oxido	98.45
2trx_A	108	Thioredoxin; electron transport; 1.68A {Escherichi	98.44
3p2a_A	148	Thioredoxin 2, putative thioredoxin-like protein;	98.44
2yzu_A	109	Thioredoxin; redox protein, electron transport, st	98.43
2e0q_A	104	Thioredoxin; electron transport; 1.49A {Sulfolobus	98.42
3d6i_A	112	Monothiol glutaredoxin-3; thioredoxin-like, electr	98.42
1nsw_A	105	Thioredoxin, TRX; thermostability, electron transp	98.42
3hxs_A	141	Thioredoxin, TRXP; electron transport; 2.00A {Bact	98.41
2l5l_A	136	Thioredoxin; structural genomics, electron transpo	98.41
1t00_A	112	Thioredoxin, TRX; redox regulation, multifunction	98.4
3hz4_A	140	Thioredoxin; NYSGXRC, PSI-II, reduced form, protei	98.39
3m9j_A	105	Thioredoxin; oxidoreductase; 1.10A {Homo sapiens}	98.38
1fb6_A	105	Thioredoxin M; electron transport; 2.10A {Spinacia	98.37
3ul3_B	128	Thioredoxin, thioredoxin-2; PTEX, oxidoreductase;	98.37
2o8v_B	128	Thioredoxin 1; disulfide crosslinked complex, oxid	98.35
3f3q_A	109	Thioredoxin-1; His TAG, electron transport, cytopl	98.34
1xwb_A	106	Thioredoxin; dimerization, redox regulation, THI X	98.33
4euy_A	105	Uncharacterized protein; structural genomics, PSI-	98.32
1r26_A	125	Thioredoxin; redox-active disulfide, electron tran	98.31
1x5d_A	133	Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC	98.3
3bq3_A	270	Defective in cullin neddylation protein 1; ubiquit	98.29
1sen_A	164	Thioredoxin-like protein P19; endoplasmic reticulu	98.29
2i1u_A	121	Thioredoxin, TRX, MPT46; redox protein, electron t	98.29
2dj1_A	140	Protein disulfide-isomerase A4; protein ERP-72, ER	98.28
3uvt_A	111	Thioredoxin domain-containing protein 5; thioredox	98.28
3aps_A	122	DNAJ homolog subfamily C member 10; thioredoxin fo	98.27
2b5x_A	148	YKUV protein, TRXY; thioredoxin-like, oxidoreducta	98.27
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	98.27
2lja_A	152	Putative thiol-disulfide oxidoreductase; structura	98.26
1v98_A	140	Thioredoxin; oxidoreductase, structural genomics,	98.26
1syr_A	112	Thioredoxin; SGPP, structural genomics, PSI, prote	98.25
2xc2_A	117	Thioredoxinn; oxidoreductase, protein disulfide re	98.25
1gh2_A	107	Thioredoxin-like protein; redox-active center, ele	98.24
2oe3_A	114	Thioredoxin-3; electron transport, alpha/beta sand	98.23
1wmj_A	130	Thioredoxin H-type; structural genomics, program f	98.22
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.21
2ppt_A	155	Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc	98.21
2j23_A	121	Thioredoxin; immune protein, autoreactivity, cross	98.21
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	98.2
2wz9_A	153	Glutaredoxin-3; protein binding; 1.55A {Homo sapie	98.19
2f9s_A	151	Thiol-disulfide oxidoreductase RESA; thioredoxin-l	98.18
1zzo_A	136	RV1677; thioredoxin fold, structural genomics, PSI	98.17
4evm_A	138	Thioredoxin family protein; structural genomics, n	98.16
2f51_A	118	Thioredoxin; electron transport; 1.90A {Trichomona	98.16
1lu4_A	136	Soluble secreted antigen MPT53; thioredoxin-like f	98.14
3cxg_A	133	Putative thioredoxin; malaria, structural GEN oxid	98.14
3erw_A	145	Sporulation thiol-disulfide oxidoreductase A; thio	98.13
1mek_A	120	Protein disulfide isomerase; electron transport, r	98.13
2l6c_A	110	Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu	98.12
3raz_A	151	Thioredoxin-related protein; structural genomics,	98.12
3gix_A	149	Thioredoxin-like protein 4B; PRE-mRNA splicing, TX	98.12
2vim_A	104	Thioredoxin, TRX; thioredoxin fold, oxidoreductase	98.12
1kng_A	156	Thiol:disulfide interchange protein CYCY; thioredo	98.12
3kh7_A	176	Thiol:disulfide interchange protein DSBE; TRX-like	98.11
3h79_A	127	Thioredoxin-like protein; thioredoxin fold, cataly	98.09
2yj7_A	106	LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti	97.37
1oaz_A	123	Thioredoxin 1; immune system, antibody/complex, an	98.08
3or5_A	165	Thiol:disulfide interchange protein, thioredoxin p	98.08
2pu9_C	111	TRX-F, thioredoxin F-type, chloroplast; protein-pr	98.05
3lor_A	160	Thiol-disulfide isomerase and thioredoxins; PSI, M	98.04
3hcz_A	148	Possible thiol-disulfide isomerase; APC61559.2, cy	98.03
3fkf_A	148	Thiol-disulfide oxidoreductase; structural genomic	98.03
1zma_A	118	Bacterocin transport accessory protein; alpha-beta	98.01
2b1k_A	168	Thiol:disulfide interchange protein DSBE; C-termin	98.0
2l5o_A	153	Putative thioredoxin; structural genomics, unknown	97.99
3gl3_A	152	Putative thiol:disulfide interchange protein DSBE;	97.98
3emx_A	135	Thioredoxin; structural genomics, oxidoreductase,	97.98
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	97.97
1faa_A	124	Thioredoxin F; electron transport; 1.85A {Spinacia	97.96
3lwa_A	183	Secreted thiol-disulfide isomerase; thioredoxin, P	97.96
2dbc_A	135	PDCL2, unnamed protein product; phosducin-like pro	97.94
2lrn_A	152	Thiol:disulfide interchange protein; structural ge	97.92
1qgv_A	142	Spliceosomal protein U5-15KD; snRNP, thioredoxin,	97.92
2dj0_A	137	Thioredoxin-related transmembrane protein 2; AVLA2	97.9
3eyt_A	158	Uncharacterized protein SPOA0173; thioredoxin-like	97.9
2av4_A	160	Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECI	97.88
3kcm_A	154	Thioredoxin family protein; SGX, thioredoxin prote	97.86
2qsi_A	137	Putative hydrogenase expression/formation protein;	97.86
2ggt_A	164	SCO1 protein homolog, mitochondrial; copper chaper	97.85
2h30_A	164	Thioredoxin, peptide methionine sulfoxide reductas	97.84
1jfu_A	186	Thiol:disulfide interchange protein TLPA; thioredo	97.8
3t58_A	519	Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.	97.79
2djj_A	121	PDI, protein disulfide-isomerase; thioredoxin fold	97.79
3hdc_A	158	Thioredoxin family protein; ATCC53774, DSM 7210, ,	97.79
3ed3_A	298	Protein disulfide-isomerase MPD1; thioredoxin-like	97.77
1x5e_A	126	Thioredoxin domain containing protein 1; TMX, TXND	97.72
3eur_A	142	Uncharacterized protein; PSI2,MCSG, conserved prot	97.72
2rli_A	171	SCO2 protein homolog, mitochondrial; copper protei	97.69
2lrt_A	152	Uncharacterized protein; structural genomics, thio	97.69
3ia1_A	154	THIO-disulfide isomerase/thioredoxin; oxidoreducta	97.68
3ewl_A	142	Uncharacterized conserved protein BF1870; alpha-be	97.68
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	97.65
2qgv_A	140	Hydrogenase-1 operon protein HYAE; alpha-beta prot	97.65
1wou_A	123	Thioredoxin -related protein, 14 kDa; electron tra	97.65
2dj3_A	133	Protein disulfide-isomerase A4; protein ERP-72, ER	97.64
1nho_A	85	Probable thioredoxin; beta sheet, alpha helix, oxi	97.63
3ha9_A	165	Uncharacterized thioredoxin-like protein; PSI, MCS	97.61
3fw2_A	150	Thiol-disulfide oxidoreductase; structural genomic	97.59
2es7_A	142	Q8ZP25_salty, putative thiol-disulfide isomerase a	97.59
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	97.57
1i5g_A	144	Tryparedoxin II; electron transport; HET: TS5; 1.4	97.53
1fo5_A	85	Thioredoxin; disulfide oxidoreductase, structural	97.52
1z96_A	40	DNA-damage, UBA-domain protein MUD1; ubiquitin, th	97.51
1a0r_P	245	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	97.49
3drn_A	161	Peroxiredoxin, bacterioferritin comigratory prote	97.46
3s9f_A	165	Tryparedoxin; thioredoxin fold, disulfide reductas	97.46
1o8x_A	146	Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrot	97.44
1wj7_A	104	Hypothetical protein (RSGI RUH-015); UBA domain, u	97.43
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	97.42
2hyx_A	352	Protein DIPZ; thioredoxin fold, jelly-roll, struct	97.41
2ywi_A	196	Hypothetical conserved protein; uncharacterized co	97.38
2r2j_A	382	Thioredoxin domain-containing protein 4; CRFS moti	97.37
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	97.37
3cmi_A	171	Peroxiredoxin HYR1; thioredoxin-like fold, oxidore	97.37
1o73_A	144	Tryparedoxin; electron transport, trypanosomatid,	97.35
2p5q_A	170	Glutathione peroxidase 5; thioredoxin fold, oxidor	97.33
2vup_A	190	Glutathione peroxidase-like protein; oxidoreductas	97.3
1xvw_A	160	Hypothetical protein RV2238C/MT2298; thioredoxin f	97.28
2cvb_A	188	Probable thiol-disulfide isomerase/thioredoxin; re	97.28
1oai_A	59	Nuclear RNA export factor; nuclear transport, nucl	97.28
3iv4_A	112	Putative oxidoreductase; APC23140, meticillin-resi	97.27
2trc_P	217	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	97.25
2bmx_A	195	Alkyl hydroperoxidase C; peroxiredoxin, antioxidan	97.24
3evi_A	118	Phosducin-like protein 2; alpha beta, 3-layer(ABA)	97.23
1zof_A	198	Alkyl hydroperoxide-reductase; decamer, toroide-sh	97.22
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	97.22
2v1m_A	169	Glutathione peroxidase; selenium, selenocysteine,	97.21
1sji_A	350	Calsequestrin 2, calsequestrin, cardiac muscle iso	97.2
4fo5_A	143	Thioredoxin-like protein; AHPC/TSA family protein,	97.2
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	97.2
1we0_A	187	Alkyl hydroperoxide reductase C; peroxiredoxin, AH	97.2
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	97.19
2k6v_A	172	Putative cytochrome C oxidase assembly protein; th	97.15
3us3_A	367	Calsequestrin-1; calcium-binding protein; 1.74A {O	97.07
3dwv_A	187	Glutathione peroxidase-like protein; alpha beta, 3	97.06
2h01_A	192	2-Cys peroxiredoxin; thioredoxin peroxidase, struc	97.03
3kp8_A	106	Vkorc1/thioredoxin domain protein; blood coagulati	97.01
2jp7_A	57	MRNA export factor MEX67; solution MEX67, UBA, tra	97.01
3kij_A	180	Probable glutathione peroxidase 8; human PDI-perox	97.0
1ilo_A	77	Conserved hypothetical protein MTH895; beta-alpha-	96.99
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	96.98
1zye_A	220	Thioredoxin-dependent peroxide reductase; catenane	96.97
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	96.97
1uul_A	202	Tryparedoxin peroxidase homologue; peroxiredoxin,	96.96
1qmv_A	197	Human thioredoxin peroxidase-B; peroxiredoxin, sul	96.95
2knz_A	53	Ubiquilin-4; cytoplasm, endoplasmic reticulum, nuc	96.9
2i81_A	213	2-Cys peroxiredoxin; structural genomics consortiu	96.81
2obi_A	183	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	96.76
2b7k_A	200	SCO1 protein; metallochaperone, cytochrome C oxida	96.73
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	96.71
2djk_A	133	PDI, protein disulfide-isomerase; thioredoxin fold	96.69
2f8a_A	208	Glutathione peroxidase 1; thioredoxin fold, struct	96.61
2dah_A	54	Ubiquilin-3; UBA domain, structural genomics, NPPS	96.6
3u5r_E	218	Uncharacterized protein; structural genomics, PSI-	96.59
2g3q_A	43	Protein YBL047C; endocytosis, solution structure,	96.59
4gew_A	362	5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosy	96.59
1ify_A	49	HHR23A, UV excision repair protein RAD23 homolog A	96.59
2bwb_A	46	Ubiquitin-like protein DSK2; UBA, signaling protei	96.58
2ls5_A	159	Uncharacterized protein; structural genomics, unkn	95.59
2p31_A	181	CL683, glutathione peroxidase 7; thioredoxin fold,	96.56
1vg5_A	73	RSGI RUH-014, rhomboid family protein; UBA domain,	96.56
2gs3_A	185	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	96.55
1xzo_A	174	BSSCO, hypothetical protein YPMQ; thioredoxin-like	96.53
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	96.48
1dv0_A	47	DNA repair protein HHR23A; helical bundle, DNA bin	96.45
1z6n_A	167	Hypothetical protein PA1234; alpha-beta-alpha sand	96.39
2jy5_A	52	Ubiquilin-1; UBA, alternative splicing, cytoplasm,	96.37
3ztl_A	222	Thioredoxin peroxidase; oxidoreductase, reductase,	96.34
4f9z_D	227	Endoplasmic reticulum resident protein 27; thiored	96.33
1wr1_B	58	Ubiquitin-like protein DSK2; UBA domain, UBA-ubiqu	96.31
1veg_A	83	NEDD8 ultimate buster-1; ubiquitin associated doma	96.31
3ga4_A	178	Dolichyl-diphosphooligosaccharide-protein glycosyl	96.28
3qcp_A	470	QSOX from trypanosoma brucei (tbqsox); ERV fold, t	96.25
2r37_A	207	Glutathione peroxidase 3; plasma, structural genom	96.23
2hls_A	243	Protein disulfide oxidoreductase; thioredoxin fold	96.2
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	96.14
2cwb_A	108	Chimera of immunoglobulin G binding protein G and	96.11
2lus_A	143	Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carci	95.1
1vej_A	74	Riken cDNA 4931431F19; UBA domain, three helix bun	96.09
1wji_A	63	Tudor domain containing protein 3; UBA domain, str	96.04
3gkn_A	163	Bacterioferritin comigratory protein; BCP, PRX, at	96.03
3a2v_A	249	Probable peroxiredoxin; thioredoxin peroxidase, hy	96.03
2l2d_A	73	OTU domain-containing protein 7A; UBA fold, struct	95.9
4gqc_A	164	Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, f	95.85
2jsy_A	167	Probable thiol peroxidase; solution structure, ant	95.81
2i3y_A	215	Epididymal secretory glutathione peroxidase; thior	95.78
1wiv_A	73	UBP14, ubiquitin-specific protease 14; ubiquitin a	95.75
1xvq_A	175	Thiol peroxidase; thioredoxin fold, structural gen	95.72
2dkl_A	85	Trinucleotide repeat containing 6C protein; TNRC6C	95.7
2c0g_A	248	ERP29 homolog, windbeutel protein; PDI-dbeta, PDI,	95.62
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	95.6
2qc7_A	240	ERP31, ERP28, endoplasmic reticulum protein ERP29;	95.59
4g2e_A	157	Peroxiredoxin; redox protein, structural genomics,	95.53
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	95.5
4hde_A	170	SCO1/SENC family lipoprotein; structural genomics,	95.48
2dak_A	63	Ubiquitin carboxyl-terminal hydrolase 5; isopeptid	95.39
2kzr_A	86	Ubiquitin thioesterase OTU1; structural genomics,	95.26
3me7_A	170	Putative uncharacterized protein; electron transfe	95.24
2c0d_A	221	Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, th	95.17
2pn8_A	211	Peroxiredoxin-4; thioredoxin, oxidoreductase, stru	94.99
2yzh_A	171	Probable thiol peroxidase; redox protein, antioxid	94.95
1wgn_A	63	UBAP1, ubiquitin associated protein; ubiquitin ass	94.88
2ooa_A	52	E3 ubiquitin-protein ligase CBL-B; alpha-helical d	94.86
1whc_A	64	RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain	94.81
2dai_A	83	Ubadc1, ubiquitin associated domain containing 1;	94.79
1wjk_A	100	C330018D20RIK protein; glutaredoxin, thioredoxin f	94.74
2dna_A	67	Unnamed protein product; ubiquitin associated doma	94.64
1n8j_A	186	AHPC, alkyl hydroperoxide reductase C22 protein; p	94.6
2a4v_A	159	Peroxiredoxin DOT5; yeast nuclear thiol peroxidase	94.59
3tjj_A	254	Peroxiredoxin-4; thioredoxin fold, sulfenylation,	94.55
2cpw_A	64	CBL-interacting protein STS-1 variant; ubiquitin a	94.53
3qpm_A	240	Peroxiredoxin; oxidoreductase, thioredoxin fold, p	94.42
2ekk_A	47	UBA domain from E3 ubiquitin-protein ligase HUWE1;	94.27
3ixr_A	179	Bacterioferritin comigratory protein; alpha beta p	94.25
2d9s_A	53	CBL E3 ubiquitin protein ligase; UBA domain, dimer	94.15
2dag_A	74	Ubiquitin carboxyl-terminal hydrolase 5; isopeptid	94.04
1ttz_A	87	Conserved hypothetical protein; structural genomic	93.87
2cp9_A	64	EF-TS, EF-TSMT, elongation factor TS, mitochondria	93.68
1otr_A	49	Protein CUE2; protein-protein complex, cell cycle;	93.67
2e7p_A	116	Glutaredoxin; thioredoxin fold, poplar, electron t	93.67
1vdl_A	80	Ubiquitin carboxyl-terminal hydrolase 25; UBA doma	93.62
2cp8_A	54	NEXT to BRCA1 gene 1 protein; UBA domain, structur	93.6
1jkg_B	250	TAP; NTF2-like domain, transport protein; 1.90A {H	93.52
3p7x_A	166	Probable thiol peroxidase; thioredoxin fold, oxido	93.43
1psq_A	163	Probable thiol peroxidase; structural genomics, NY	93.22
1v58_A	241	Thiol:disulfide interchange protein DSBG; reduced	92.89
1eej_A	216	Thiol:disulfide interchange protein; oxidoreductas	92.24
1vek_A	84	UBP14, ubiquitin-specific protease 14, putative; U	92.15
3zrd_A	200	Thiol peroxidase; oxidoreductase, 2Cys peroxiredox	91.98
1wgl_A	59	TOLL-interacting protein; CUE domain, structural g	91.49
1q98_A	165	Thiol peroxidase, TPX; structural genomics, NYSGXR	91.32
2lva_A	129	Ubiquitin carboxyl-terminal hydrolase 28; UIM, ubi	90.11
3kp9_A	291	Vkorc1/thioredoxin domain protein; warfarin, disul	90.39
2lbc_A	126	Ubiquitin carboxyl-terminal hydrolase 13; tandem U	90.34
2v2g_A	233	Peroxiredoxin 6; oxidoreductase, antioxidant enzym	89.81
2hls_A	243	Protein disulfide oxidoreductase; thioredoxin fold	89.52
1tp9_A	162	Peroxiredoxin, PRX D (type II); oligomer, thioredo	89.31
3gyk_A	175	27KDA outer membrane protein; APC61738.2, siliciba	89.2
4eo3_A	322	Bacterioferritin comigratory protein/NADH dehydro;	89.18
1nm3_A	241	Protein HI0572; hybrid, peroxiredoxin, glutaredoxi	88.97
2crn_A	64	Ubash3A protein; compact three-helix bundle, struc	87.9
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	87.4
3keb_A	224	Probable thiol peroxidase; structural genomics, AP	87.38
4ae4_A	118	Ubiquitin-associated protein 1; protein transport,	87.05
3bj5_A	147	Protein disulfide-isomerase; thioredoxin fold, cha	86.78
2fgx_A	107	Putative thioredoxin; NET3, NESG, GFT-glutaredoxin	86.18
2pjh_A	80	Protein NPL4, nuclear protein localization protein	84.66
1t3b_A	211	Thiol:disulfide interchange protein DSBC; oxidored	84.56
2k8s_A	80	Thioredoxin; dimer, structural genomics, PSI-2, pr	84.54
2juj_A	56	E3 ubiquitin-protein ligase CBL; alpha helix, UBA	84.45
2dhy_A	67	CUE domain-containing protein 1; structural genomi	83.84
1xcc_A	220	1-Cys peroxiredoxin; unknown function, structural	83.51
3uma_A	184	Hypothetical peroxiredoxin protein; nysgrc, PSI bi	82.3
3sbc_A	216	Peroxiredoxin TSA1; alpha-beta fold, peroxidase, c	81.9
2oo9_A	46	E3 ubiquitin-protein ligase CBL; alpha-helical dom	80.83
3mng_A	173	Peroxiredoxin-5, mitochondrial; peroxidase, PRXV,	80.08

>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24

Probab=99.97  E-value=1.1e-30  Score=227.14  Aligned_cols=134  Identities=43%  Similarity=0.852  Sum_probs=127.3

Q ss_pred             CcchhhHHHHhhcCCCcccccccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeec
Q 036413          111 DNKNNNNNLASLYRPPVDLMFNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYD  190 (346)
Q Consensus       111 ~~~~~~~~l~~lf~PP~~l~~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~  190 (346)
                      .+.++.++|+.+|+||+.++|.++|++|++.||+++|||||||+++||+.|++|+|+||+|+.|+++|+ +|||+|++++
T Consensus         7 ~~~~~~~~l~~lf~~p~~~~~~~~~~~Al~~Ak~~~K~vlvd~~a~wC~~C~~me~~vf~d~~V~~~l~-~~fv~v~~d~   85 (153)
T 2dlx_A            7 GIDKKLTTLADLFRPPIDLMHKGSFETAKECGQMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIR-EHFIFWQVYH   85 (153)
T ss_dssp             CCCCCCCCCCCTTSCCTTTSCCSCHHHHHHHHHHHTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHH-HTEEEEEEES
T ss_pred             CCCchhhHHHHhhCCchhhhcccCHHHHHHHHHHcCCeEEEEEECCCCHhHHHHHHHhcCCHHHHHHHH-cCeEEEEEec
Confidence            445667899999999999999999999999999999999999999999999999999999999999999 9999999999


Q ss_pred             CCCCCCCChHHHHHHhhcCCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHHcCCc
Q 036413          191 DDDDDDDDSECRKVCGYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMESGPR  252 (346)
Q Consensus       191 ~~~~~~~~~eg~~~~~~y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~~~~~  252 (346)
                      +      ++++..+++.|++..+|+++||||.||+.+.+|.| +++++|++.|.++++.+..
T Consensus        86 ~------~~~~~~l~~~y~v~~~P~~~fld~~~G~~l~~~~g-~~~~~fl~~L~~~l~~~~~  140 (153)
T 2dlx_A           86 D------SEEGQRYIQFYKLGDFPYVSILDPRTGQKLVEWHQ-LDVSSFLDQVTGFLGEHGQ  140 (153)
T ss_dssp             S------SHHHHHHHHHHTCCSSSEEEEECTTTCCCCEEESS-CCHHHHHHHHHHHHHHTCS
T ss_pred             C------CHhHHHHHHHcCCCCCCEEEEEeCCCCcEeeecCC-CCHHHHHHHHHHHHHhcCC
Confidence            9      99999999999999999999999988998988877 8999999999999998863

>2ec4_A FAS-associated factor 1; UAS domain, protein FAF1, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.97  E-value=2.6e-30  Score=230.19  Aligned_cols=137  Identities=20%  Similarity=0.227  Sum_probs=125.7

Q ss_pred             CcchhhHHHHhhcCCCcccccccCHHHHHHHh----hhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEE
Q 036413          111 DNKNNNNNLASLYRPPVDLMFNGSFEKAKDVG----SDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFW  186 (346)
Q Consensus       111 ~~~~~~~~l~~lf~PP~~l~~~gsf~~A~~~A----k~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw  186 (346)
                      .+..|++.|++.|+++|+.||.|+|++|++.|    |+++||||||||+++|++|+.|||+||||+.|+++|+ +|||+|
T Consensus        16 ~~~~F~~~f~~~yg~~~p~F~~gs~~~Al~~A~~~~k~e~K~LlVyLhs~~~~~~~~f~~~~L~~~~V~~~l~-~nfV~w   94 (178)
T 2ec4_A           16 ALLQFTAEFSSRYGDCHPVFFIGSLEAAFQEAFYVKARDRKLLAIYLHHDESVLTNVFCSQMLCAESIVSYLS-QNFITW   94 (178)
T ss_dssp             HHHHHHHHHHHHHCSCCCCCCCSCHHHHHHTTTSSCTTTCCEEEEEEECSSCSHHHHHHHHTTTCHHHHHHHH-HTEEEE
T ss_pred             HHHHHHHHHHHHhCCCCCCeeeCCHHHHHHHHHhhhhhhCcEEEEEEeCCCCccHHHHHHHhcCCHHHHHHHH-cCEEEE
Confidence            34679999999999999999999999999999    9999999999999999999999999999999999999 999999


Q ss_pred             EeecCCCCCCCChH-------------HHHHHhh---cCCCCCceEEEEeCCC--CceEEEEeCCCChHHHHHHHHHHHH
Q 036413          187 QVYDDDDDDDDDSE-------------CRKVCGY---YKLDSLPVVLVIDPIT--GEKMRKWCGMVDPVSLLEDLLSFME  248 (346)
Q Consensus       187 ~~~~~~~~~~~~~e-------------g~~~~~~---y~~~~~P~i~iidp~t--ge~l~~~~G~~~~~~~i~~L~~fl~  248 (346)
                      ++|++      ++|             |.+++..   |+++.||+++||+|+.  ++.+.+++|.+++++|++.|.++++
T Consensus        95 ~~dv~------~~e~~~~~~~~~~~~~g~~~a~~~~~~~~~~~P~l~ii~~~~~~~~vl~~~~G~~~~~~ll~~L~~~~e  168 (178)
T 2ec4_A           95 AWDLT------KDSNRARFLTMCNRHFGSVVAQTIRTQKTDQFPLFLIIMGKRSSNEVLNVIQGNTTVDELMMRLMAAME  168 (178)
T ss_dssp             EEECC------SHHHHHHHHHHHHHHTCHHHHHHHHHSCSTTCSEEEEECCCSSCCCEEEEECSCCCHHHHHHHHHHHHH
T ss_pred             EEeCC------CchhhhhhhhhhhhhhHHHHHHHHhhcCCCCCCeEEEEEcCCCceEEEEEEeCCCCHHHHHHHHHHHHH
Confidence            99999      898             5667765   8999999999999863  3567889999999999999999999


Q ss_pred             cCCccc
Q 036413          249 SGPRDQ  254 (346)
Q Consensus       249 ~~~~~~  254 (346)
                      .+..++
T Consensus       169 ~~~~~l  174 (178)
T 2ec4_A          169 IFTAQQ  174 (178)
T ss_dssp             HHHHHS
T ss_pred             HhhHhh
Confidence            886543

>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2

Probab=99.41  E-value=5.1e-13  Score=109.40  Aligned_cols=67  Identities=22%  Similarity=0.483  Sum_probs=56.7

Q ss_pred             CCCCCCCCCCCCCCCCeeEEEEEcCCCccc---------------------cCCcceEEecCCCCCCCCccCCcccchhh
Q 036413          275 AYPAVPEEPLQVARNLVCRIGVRLPDGQEA---------------------NQTRQFRLTRPDPGAPKPLDYNSKMTFQE  333 (346)
Q Consensus       275 ~~~~~~~EP~~~~~~~~trIqiRlpdG~ri---------------------~~~~~f~l~~~~P~~~~~l~~~~d~Tiee  333 (346)
                      +...+|+||.+ +..++|+||||||||+|+                     ..++.|+|++.||+  +.+..+.++||+|
T Consensus         8 ~~~~lp~EP~~-~~~~~~~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~~~~~~~f~L~t~fPr--k~l~~d~~~TL~e   84 (109)
T 2cr5_A            8 EVPDLPEEPSE-TAEEVVTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKVGYHKSLYRLSTSFPR--RALEVEGGSSLED   84 (109)
T ss_dssp             CCCCCCCCCCS-SCSSEEEEEEECTTSCEEEEEEESSSBTHHHHHHHHHHTCCTTTEEEECSSSC--CBCCCCSSCBHHH
T ss_pred             ccccCCCCCCC-CCCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhcCCCCCCeEEEeCCCC--cCCCCCCCCCHHH
Confidence            45679999988 557899999999999987                     12578999999995  6676688999999


Q ss_pred             cCCCceeEEEE
Q 036413          334 SGLNNSVILVT  344 (346)
Q Consensus       334 agL~n~~vl~~  344 (346)
                      +||.|+.+|++
T Consensus        85 ~gL~p~a~L~V   95 (109)
T 2cr5_A           85 IGITVDTVLNV   95 (109)
T ss_dssp             HTCSSCEEEEE
T ss_pred             cCCCCCeEEEE
Confidence            99999888775

>3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343}

Probab=99.32  E-value=7.8e-13  Score=114.20  Aligned_cols=117  Identities=14%  Similarity=0.209  Sum_probs=99.4

Q ss_pred             ccccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCCh----------
Q 036413          130 MFNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDS----------  199 (346)
Q Consensus       130 ~~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~----------  199 (346)
                      ....+|++++..|+.++|++||++..+||..|+.|.+.+|.++.+.++++ ++|++..++.++  ..+..          
T Consensus        31 ~~~~~~~~~~~~a~~~gk~vlv~F~A~WC~~C~~~~~~~~~~~~~~~~~~-~~~~~v~v~~d~--~~~~~~~~~~~~~~~  107 (172)
T 3f9u_A           31 AKFDDYDLGMEYARQHNKPVMLDFTGYGCVNCRKMELAVWTDPKVSSIIN-NDYVLITLYVDN--KTPLTEPVKIMENGT  107 (172)
T ss_dssp             CCBSCHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHTTTSHHHHHHHH-HHCEEEEEETTC--CCEEEEEEEEEETTE
T ss_pred             cchhhHHHHHHHHHHcCCeEEEEEECCCCHHHHHHHHHhcCCHHHHHHhc-CCEEEEEEecCc--ccccchhhhhhhcch
Confidence            34668999999999999999999999999999999999999999999999 899999999882  11000          


Q ss_pred             ----------HHHHHHhhcCCCCCceEEEEeCCCCceEEEEeCCCC-hHHHHHHHHHHHHcC
Q 036413          200 ----------ECRKVCGYYKLDSLPVVLVIDPITGEKMRKWCGMVD-PVSLLEDLLSFMESG  250 (346)
Q Consensus       200 ----------eg~~~~~~y~~~~~P~i~iidp~tge~l~~~~G~~~-~~~~i~~L~~fl~~~  250 (346)
                                .+.-.+..|++..+|++.|||+ .|+.+....|..+ +++|++.|.+.++.+
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~v~~~Pt~~lid~-~G~~~~~~~G~~~~~~~l~~~l~~~l~~~  168 (172)
T 3f9u_A          108 ERTLRTVGDKWSYLQRVKFGANAQPFYVLIDN-EGNPLNKSYAYDEDISKYINFLQTGLENY  168 (172)
T ss_dssp             EEEEEEHHHHHHHHHHHHHSCCCSSEEEEECT-TSCBSSCCBCSCCCHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhhhHHHHHHcCCCCcceEEEECC-CCCEEeeccCCCCCHHHHHHHHHHHHHHh
Confidence                      0111168899999999999997 6998888889887 999999999988764

>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3

Probab=99.30  E-value=2.3e-12  Score=89.27  Aligned_cols=43  Identities=23%  Similarity=0.570  Sum_probs=40.1

Q ss_pred             hhHHHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhhcC
Q 036413            8 KQRKRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNNNS   51 (346)
Q Consensus         8 ~~~~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~~~   51 (346)
                      ++++++|.+|++| ||++++.|++||++++|||+.||+.||+.+
T Consensus         3 ~~~~~~i~~F~~i-Tg~~~~~A~~~L~~~~wdle~Ai~~ff~~~   45 (46)
T 1v92_A            3 EERQDALREFVAV-TGAEEDRARFFLESAGWDLQIALASFYEDG   45 (46)
T ss_dssp             THHHHHHHHHHHH-TCCCHHHHHHHHHHTTSCSHHHHHHHHHTC
T ss_pred             ccHHHHHHHHHHH-hCcCHHHHHHHHHHcCCCHHHHHHHHHcCC
Confidence            4678899999999 788999999999999999999999999865

>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}

Probab=99.28  E-value=1.1e-12  Score=90.34  Aligned_cols=43  Identities=23%  Similarity=0.382  Sum_probs=36.6

Q ss_pred             hhhHHHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhh
Q 036413            7 KKQRKRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNN   49 (346)
Q Consensus         7 ~~~~~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~   49 (346)
                      +.+++++|++|++||+..+.++|++||++|||||+.||+.||.
T Consensus         2 ~~d~de~ia~F~~iTG~~d~~~A~~~Lea~nWDLe~Av~~f~~   44 (45)
T 3e21_A            2 SMDREMILADFQACTGIENIDEAITLLEQNNWDLVAAINGVIP   44 (45)
T ss_dssp             -CCHHHHHHHHHHHHCCCCHHHHHHHHHHTTTCHHHHHTTC--
T ss_pred             cccHHHHHHHHHHHHCCCCHHHHHHHHHHcCCcHHHHHHHHcC
Confidence            3579999999999955566799999999999999999999985

>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}

Probab=99.26  E-value=2.3e-11  Score=99.46  Aligned_cols=111  Identities=22%  Similarity=0.262  Sum_probs=100.2

Q ss_pred             cccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCC
Q 036413          131 FNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKL  210 (346)
Q Consensus       131 ~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~  210 (346)
                      ...+|++++..|+.++|++||++.++||..|+.+...++.++.+.++++ .+|+++.++.+      ..+...++..|++
T Consensus        12 ~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~-~~~~~~~vd~~------~~~~~~~~~~~~v   84 (130)
T 2kuc_A           12 RELSFPEALKRAEVEDKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFN-RHFVNLKMDME------KGEGVELRKKYGV   84 (130)
T ss_dssp             BCCCHHHHHHHHHHHSSCEEEEECCTTCTHHHHHHHHGGGCHHHHHHHH-HHSEEEEECSS------STTHHHHHHHTTC
T ss_pred             ccCCHHHHHHHHHhcCCeEEEEEECCCCccHHHHHHHhcCcHHHHHHHh-cCeEEEEEecC------CcchHHHHHHcCC
Confidence            4688999999999999999999999999999999998888899999999 99999999888      6667889999999


Q ss_pred             CCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHHc
Q 036413          211 DSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMES  249 (346)
Q Consensus       211 ~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~~  249 (346)
                      ..+|++.++|+ .|+.+..+.|..+.++|.+.|.+.+..
T Consensus        85 ~~~Pt~~~~d~-~G~~~~~~~G~~~~~~l~~~l~~~~~~  122 (130)
T 2kuc_A           85 HAYPTLLFINS-SGEVVYRLVGAEDAPELLKKVKLGVES  122 (130)
T ss_dssp             CSSCEEEEECT-TSCEEEEEESCCCHHHHHHHHHHHHSC
T ss_pred             CCCCEEEEECC-CCcEEEEecCCCCHHHHHHHHHHHHHh
Confidence            99999999996 699998999998998888888877643

>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.23  E-value=1.2e-11  Score=91.18  Aligned_cols=45  Identities=29%  Similarity=0.418  Sum_probs=41.8

Q ss_pred             hhHHHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhhcCCC
Q 036413            8 KQRKRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNNNSNN   53 (346)
Q Consensus         8 ~~~~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~~~~~   53 (346)
                      ..++++|.+||+| ||+++++|++||++++||||.||++||+.++.
T Consensus        13 ~~~~e~i~qF~~i-Tg~~~~~A~~~Le~~~WnLe~Av~~ff~~~~~   57 (62)
T 2dal_A           13 SALKGLIQQFTTI-TGASESVGKHMLEACNNNLEMAVTMFLDGGGS   57 (62)
T ss_dssp             HHHHHHHHHHHHH-TCCCHHHHHHHHHTTTSCHHHHHHHHHHSCCC
T ss_pred             ccHHHHHHHHHHH-hCCCHHHHHHHHHHcCCCHHHHHHHHHcCCCC
Confidence            6788999999999 89999999999999999999999999997643

>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus}

Probab=98.87  E-value=9.3e-13  Score=108.09  Aligned_cols=109  Identities=17%  Similarity=0.274  Sum_probs=99.5

Q ss_pred             HHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCCCCce
Q 036413          136 EKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPV  215 (346)
Q Consensus       136 ~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~  215 (346)
                      .+++..|+.++|++||++.++||..|+.+...++.++.+.+.++ .+|+++.++.+      ..+...++..|++..+|+
T Consensus         9 ~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~-~~~~~~~vd~~------~~~~~~~~~~~~v~~~Pt   81 (130)
T 2lst_A            9 PEALALAQAHGRMVMVYFHSEHCPYCQQMNTFVLSDPGVSRLLE-ARFVVASVSVD------TPEGQELARRYRVPGTPT   81 (130)
Confidence            88999999999999999999999999999999999999999999 89999999988      677888999999999999


Q ss_pred             EEEEeCCCCce--EEEEeCCCChHHHHHHHHHHHHcCC
Q 036413          216 VLVIDPITGEK--MRKWCGMVDPVSLLEDLLSFMESGP  251 (346)
Q Consensus       216 i~iidp~tge~--l~~~~G~~~~~~~i~~L~~fl~~~~  251 (346)
                      +.++||..|+.  +..+.|..++++|.+.|.+.+....
T Consensus        82 ~~~~d~~~G~~~~~~~~~G~~~~~~l~~~l~~~~~~~~  119 (130)
T 2lst_A           82 FVFLVPKAGAWEEVGRLFGSRPRAEFLKELRQVCVKGG  119 (130)
Confidence            99999888888  8888998888888888888876554

>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae}

Probab=99.19  E-value=7.5e-11  Score=100.59  Aligned_cols=108  Identities=12%  Similarity=0.186  Sum_probs=97.5

Q ss_pred             cCHHHHHHHhhhcCcEEEEEec-CCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCC--------hHHHH
Q 036413          133 GSFEKAKDVGSDENKWLLVNLQ-SPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDD--------SECRK  203 (346)
Q Consensus       133 gsf~~A~~~Ak~~~K~LlV~l~-~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~--------~eg~~  203 (346)
                      .++.+++..|+.++|++||++. ++||..|+.+...++.++.+.++.+ .+|++..++.+.     .        .....
T Consensus        34 ~~~~~~~~~a~~~gk~vlv~F~ga~wC~~C~~~~p~l~~~~~~~~~~~-~~~~~v~vd~~~-----~~~~~~~~~~~~~~  107 (154)
T 2ju5_A           34 ESYAEALEHSKQDHKPIGLFFTGSDWCMWCIKMQDQILQSSEFKHFAG-VHLHMVEVDFPQ-----KNHQPEEQRQKNQE  107 (154)
T ss_dssp             ECHHHHHHHHHHHCCCEEEEEECTTTCHHHHHHHHHTTTSHHHHHHHH-HHCEEEEEECCS-----SCCCCHHHHHHHHH
T ss_pred             CCHHHHHHHHHhCCCeEEEEEeCCCCCHhHHHHHHHHhcCHHHHHHhc-CcEEEEEecCcc-----ccCCChhhHhhHHH
Confidence            7899999999999999999999 8999999999999999999999998 899999999882     2        34668


Q ss_pred             HHhhcCCCCCceEEEEeCCCCceEEEEeCCC--ChHHHHHHHHHHHH
Q 036413          204 VCGYYKLDSLPVVLVIDPITGEKMRKWCGMV--DPVSLLEDLLSFME  248 (346)
Q Consensus       204 ~~~~y~~~~~P~i~iidp~tge~l~~~~G~~--~~~~~i~~L~~fl~  248 (346)
                      ++..|++..+|++.|||+ .|+.+..+ |..  ++++|++.|.+.+.
T Consensus       108 l~~~~~v~~~Pt~~~~d~-~G~~~~~~-G~~~~~~~~l~~~l~~~l~  152 (154)
T 2ju5_A          108 LKAQYKVTGFPELVFIDA-EGKQLARM-GFEPGGGAAYVSKVKSALK  152 (154)
T ss_dssp             HHHHTTCCSSSEEEEECT-TCCEEEEE-CCCTTCHHHHHHHHHHHHT
T ss_pred             HHHHcCCCCCCEEEEEcC-CCCEEEEe-cCCCCCHHHHHHHHHHHHh
Confidence            899999999999999996 69999988 988  89999999888764

>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.17  E-value=2e-11  Score=91.45  Aligned_cols=46  Identities=17%  Similarity=0.367  Sum_probs=41.4

Q ss_pred             hhhHHHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhhcCC
Q 036413            7 KKQRKRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNNNSN   52 (346)
Q Consensus         7 ~~~~~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~~~~   52 (346)
                      +.+++++|.+|++||+++++++|++||+++|||||.||+.||+...
T Consensus        15 s~~~~e~i~qF~~ITg~~d~~~A~~~Le~~~WnLe~Av~~ff~~~~   60 (67)
T 2dam_A           15 TQEQTEKLLQFQDLTGIESMDQCRHTLEQHNWNIEAAVQDRLNEQE   60 (67)
T ss_dssp             CHHHHHHHHHHHHHHCCSCHHHHHHHHHHHTSCHHHHHHHHHHSSC
T ss_pred             ChhHHHHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence            3678999999999954499999999999999999999999999754

>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A

Probab=99.15  E-value=1.8e-11  Score=105.63  Aligned_cols=120  Identities=15%  Similarity=0.173  Sum_probs=97.5

Q ss_pred             HHhhcCCCcccccccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCC
Q 036413          119 LASLYRPPVDLMFNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDD  198 (346)
Q Consensus       119 l~~lf~PP~~l~~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~  198 (346)
                      ++..|+.  .+-...+|++|++.|++++|++||++..+||..|+.|...++.++.|.++++ .+||...++.+      .
T Consensus        19 ~~~~~~~--~i~W~~~~~~al~~A~~~~KpVlV~F~A~WC~~Ck~m~p~~~~~~~~~~~~~-~~fv~V~vD~e------~   89 (151)
T 3ph9_A           19 LSRGWGD--DITWVQTYEEGLFYAQKSKKPLMVIHHLEDCQYSQALKKVFAQNEEIQEMAQ-NKFIMLNLMHE------T   89 (151)
T ss_dssp             SSTTSCT--TSCCCSSHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHCHHHHHHHH-HTCEEEEESSC------C
T ss_pred             ccccccC--CCcchhCHHHHHHHHHHcCCcEEEEEECCCCHhHHHHHHHHhcCHHHHHHhh-cCeEEEEecCC------c
Confidence            4444544  3335679999999999999999999999999999999999999999999999 89999888643      2


Q ss_pred             hHHHHHHhhcCCCCCceEEEEeCCCCceEEEEeCC-------C---ChHHHHHHHHHHHHcCC
Q 036413          199 SECRKVCGYYKLDSLPVVLVIDPITGEKMRKWCGM-------V---DPVSLLEDLLSFMESGP  251 (346)
Q Consensus       199 ~eg~~~~~~y~~~~~P~i~iidp~tge~l~~~~G~-------~---~~~~~i~~L~~fl~~~~  251 (346)
                      .+   .+..|++..+|++++++| .|+.+..+.|.       .   +.+.+++.+.+.+.++.
T Consensus        90 ~~---~~~~~~v~~~PT~~f~~~-~G~~v~~~~G~~~~~~~~~~~~~~~~ll~~~~~al~~~~  148 (151)
T 3ph9_A           90 TD---KNLSPDGQYVPRIMFVDP-SLTVRADIAGRYSNRLYTYEPRDLPLLIENMKKALRLIQ  148 (151)
T ss_dssp             SC---GGGCTTCCCSSEEEEECT-TSCBCTTCCCSCTTSTTCCCGGGHHHHHHHHHHHHSCCC
T ss_pred             hh---hHhhcCCCCCCEEEEECC-CCCEEEEEeCCcCCcccccchhhHHHHHHHHHHHHHHHh
Confidence            22   356788899999999997 59988888887       3   34668888888877654

>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A

Probab=99.14  E-value=3.4e-11  Score=101.14  Aligned_cols=59  Identities=31%  Similarity=0.390  Sum_probs=49.2

Q ss_pred             CCCCCCCeeEEEEEcCCCccc---------------------c--CCcceEEecCCCCCCCCccCCcccchhhcCCCcee
Q 036413          284 LQVARNLVCRIGVRLPDGQEA---------------------N--QTRQFRLTRPDPGAPKPLDYNSKMTFQESGLNNSV  340 (346)
Q Consensus       284 ~~~~~~~~trIqiRlpdG~ri---------------------~--~~~~f~l~~~~P~~~~~l~~~~d~TieeagL~n~~  340 (346)
                      ..++..++|+||||||||+|+                     .  ..+.|+|++.||+  +.+ .+.++||+|+||.|++
T Consensus        45 ~~d~~~~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fPr--k~l-~d~~~TL~eagL~psa  121 (127)
T 1s3s_G           45 LINEAEPTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPN--KEL-ADENQTLKEANLLNAV  121 (127)
T ss_dssp             CCCTTSCCCCEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEETTTT--EEC-CSTTCBHHHHTCSSCE
T ss_pred             cccCCCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEecCCCC--CCC-CCCCCcHHHCCCcCce
Confidence            344567899999999999997                     1  1478999999995  445 4678999999999999


Q ss_pred             EEEEe
Q 036413          341 ILVTL  345 (346)
Q Consensus       341 vl~~~  345 (346)
                      |+++|
T Consensus       122 vl~k~  126 (127)
T 1s3s_G          122 IVQRL  126 (127)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            99999

>3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei}

Probab=99.06  E-value=1.8e-10  Score=101.50  Aligned_cols=108  Identities=16%  Similarity=0.247  Sum_probs=84.7

Q ss_pred             cccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhc--
Q 036413          131 FNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYY--  208 (346)
Q Consensus       131 ~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y--  208 (346)
                      ..-.+++|++.|++++|.|||++..+||..|++|.+.+|.++.|.++++ ++||+..+|.++     .++   +...|  
T Consensus        24 W~~~~~ea~~~A~~~~KpVlvdF~A~WC~~Ck~m~~~~f~~~~va~~l~-~~fv~ikVD~de-----~~~---l~~~y~~   94 (173)
T 3ira_A           24 WYPWGEEAFEKARKENKPVFLSIGYSTCHWCHMMAHESFEDEEVAGLMN-EAFVSIKVDREE-----RPD---IDNIYMT   94 (173)
T ss_dssp             CBCSSHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHTTTCHHHHHHHH-HHCEEEEEETTT-----CHH---HHHHHHH
T ss_pred             CCCcCHHHHHHHHHhCCCEEEecccchhHhhccccccccCCHHHHHHHH-hcCceeeeCCcc-----cCc---HHHHHHH
Confidence            3455699999999999999999999999999999999999999999999 999999998883     333   33334  


Q ss_pred             ------CCCCCceEEEEeCCCCceEEEEe-----CCCChHHHHHHHHHHHH
Q 036413          209 ------KLDSLPVVLVIDPITGEKMRKWC-----GMVDPVSLLEDLLSFME  248 (346)
Q Consensus       209 ------~~~~~P~i~iidp~tge~l~~~~-----G~~~~~~~i~~L~~fl~  248 (346)
                            ++..+|++++++| .|+.+....     |..+...|++.|....+
T Consensus        95 ~~q~~~gv~g~Pt~v~l~~-dG~~v~~~ty~p~~~~~~~~~f~~~L~~v~~  144 (173)
T 3ira_A           95 VCQIILGRGGWPLNIIMTP-GKKPFFAGTYIPKNTRFNQIGMLELVPRIKE  144 (173)
T ss_dssp             HHHHHHSCCCSSEEEEECT-TSCEEEEESSCCSSCBTTBCCHHHHHHHHHH
T ss_pred             HHHHHcCCCCCcceeeECC-CCCceeeeeeCCCCcCCCCCCHHHHHHHHHH
Confidence                  8999999999998 588776531     12233445555554443

>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.05  E-value=1.4e-10  Score=86.51  Aligned_cols=42  Identities=26%  Similarity=0.551  Sum_probs=38.8

Q ss_pred             HH-HHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhhcCC
Q 036413           10 RK-RVISSFLEITNGQTEETALKILNATNWNLDKAILRFNNNSN   52 (346)
Q Consensus        10 ~~-~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~~~~   52 (346)
                      ++ ++|.+|++| ||+++++|++||++++||||.||+.||+..+
T Consensus        16 ~~q~~i~qF~~i-Tg~~~~~A~~~Le~~~WdLe~Al~~ff~~~~   58 (66)
T 2dzl_A           16 RHQVMINQFVLA-AGCAADQAKQLLQAAHWQFETALSTFFQETN   58 (66)
T ss_dssp             HHHHHHHHHHHH-HCCCHHHHHHHHHTTTTCHHHHHHHHHTCSC
T ss_pred             ccHHHHHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHHHHHcCCC
Confidence            45 799999999 8999999999999999999999999998654

>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A

Probab=99.05  E-value=3.1e-10  Score=92.77  Aligned_cols=57  Identities=25%  Similarity=0.367  Sum_probs=44.5

Q ss_pred             CCCCeeEEEEEcCCCccc---------------------c-CCcceEEecCCCCCCCCccC-CcccchhhcCCCcee-EE
Q 036413          287 ARNLVCRIGVRLPDGQEA---------------------N-QTRQFRLTRPDPGAPKPLDY-NSKMTFQESGLNNSV-IL  342 (346)
Q Consensus       287 ~~~~~trIqiRlpdG~ri---------------------~-~~~~f~l~~~~P~~~~~l~~-~~d~TieeagL~n~~-vl  342 (346)
                      +.+++|+||||||||+|+                     . ..+.|+|++.||+  +.+.. +.++||+|+||.++. |+
T Consensus         9 ~~~~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t~fPr--k~l~~~d~~~TL~elgL~psa~L~   86 (109)
T 2dzk_A            9 DRSTIARIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFPR--REFTREDYKRRLLDLELAPSASVV   86 (109)
T ss_dssp             CCSCCEEEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEECSSSC--CBCCTTTTTSBTGGGTCSSEEEEE
T ss_pred             CCCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEEcCCCC--cCCcccccCCCHHHCCCCCceEEE
Confidence            456799999999999998                     1 2379999999995  44543 678999999999855 44


Q ss_pred             EEe
Q 036413          343 VTL  345 (346)
Q Consensus       343 ~~~  345 (346)
                      |+|
T Consensus        87 v~~   89 (109)
T 2dzk_A           87 LLP   89 (109)
T ss_dssp             EEC
T ss_pred             EEE
Confidence            545

>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A

Probab=99.04  E-value=3.4e-10  Score=88.06  Aligned_cols=55  Identities=16%  Similarity=0.247  Sum_probs=45.5

Q ss_pred             CCCeeEEEEEcCCCccc---------------------cCCcceEEecCCCCCCCCc-cCCcccchhhcCCCceeEEEE
Q 036413          288 RNLVCRIGVRLPDGQEA---------------------NQTRQFRLTRPDPGAPKPL-DYNSKMTFQESGLNNSVILVT  344 (346)
Q Consensus       288 ~~~~trIqiRlpdG~ri---------------------~~~~~f~l~~~~P~~~~~l-~~~~d~TieeagL~n~~vl~~  344 (346)
                      ..++|+||||||||+|+                     ..+..|.|++.||+  +.+ ..+.++||+|+||.++.+|++
T Consensus         4 ~~~~~~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~~~~~~~~f~L~t~fPr--k~l~~~d~~~TL~e~gL~p~a~L~v   80 (84)
T 3qx1_A            4 MEPVSKLRIRTPSGEFLERRFLASNKLQIVFDFVASKGFPWDEYKLLSTFPR--RDVTQLDPNKSLLEVKLFPQETLFL   80 (84)
T ss_dssp             CCCEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHTTCCTTTEEEECSSSC--CBGGGSCTTSBTTTTTCCSEEEEEE
T ss_pred             CCCeEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHcCCCCCCeEEEeCCCC--CCCcCCCCCCCHHHCCCCCCCEEEE
Confidence            35799999999999987                     13589999999996  556 457889999999998877764

>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa}

Probab=99.00  E-value=6.3e-10  Score=91.47  Aligned_cols=105  Identities=14%  Similarity=0.168  Sum_probs=88.7

Q ss_pred             cCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCC--
Q 036413          133 GSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKL--  210 (346)
Q Consensus       133 gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~--  210 (346)
                      -+|++++..|+.++|.+||++.++||..|+.+.. +|.++.+.+.++ .++.+..++.+.     ..+...++..|++  
T Consensus        16 ~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~-~l~~~~~~~~~~-~~~~~~~vd~~~-----~~~~~~l~~~~~v~~   88 (133)
T 3fk8_A           16 TQVKKALAAGKRTHKPTLLVFGANWCTDCRALDK-SLRNQKNTALIA-KHFEVVKIDVGN-----FDRNLELSQAYGDPI   88 (133)
T ss_dssp             HHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHH-HHTSHHHHHHHH-HHCEEEEEECTT-----TTSSHHHHHHTTCGG
T ss_pred             hHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHH-HhCCHHHHHHhc-CCEEEEEEeCCc-----ccchHHHHHHhCCcc
Confidence            4689999999999999999999999999999976 688889999998 899999999852     2345679999999  


Q ss_pred             -CCCceEEEEeCCCCceEEEEeC-------CCChHHHHHHHHH
Q 036413          211 -DSLPVVLVIDPITGEKMRKWCG-------MVDPVSLLEDLLS  245 (346)
Q Consensus       211 -~~~P~i~iidp~tge~l~~~~G-------~~~~~~~i~~L~~  245 (346)
                       ..+|++.++|+ .|+.+....|       ..+.+++.+.|..
T Consensus        89 ~~~~Pt~~~~d~-~G~~~~~~~g~~~~~~~~~~~~~l~~~l~~  130 (133)
T 3fk8_A           89 QDGIPAVVVVNS-DGKVRYTTKGGELANARKMSDQGIYDFFAK  130 (133)
T ss_dssp             GGCSSEEEEECT-TSCEEEECCSCTTTTGGGSCHHHHHHHHHH
T ss_pred             CCccceEEEECC-CCCEEEEecCCcccccccCCHHHHHHHHHH
Confidence             99999999996 6999988888       5666655555544

>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A

Probab=98.97  E-value=1.6e-09  Score=89.74  Aligned_cols=113  Identities=14%  Similarity=0.208  Sum_probs=90.7

Q ss_pred             CCCcc-cccccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHH
Q 036413          124 RPPVD-LMFNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECR  202 (346)
Q Consensus       124 ~PP~~-l~~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~  202 (346)
                      .|+|. +--..+|..++..++  +|++||++.++||..|+.+...++.++.+.+.++ + +.+..++.+.    ...+..
T Consensus        10 ~~~f~~~~~~~~~~~~l~~~~--~k~vlv~F~a~wC~~C~~~~~~~~~~~~l~~~~~-~-~~~~~vd~~~----~~~~~~   81 (134)
T 2fwh_A           10 HLNFTQIKTVDELNQALVEAK--GKPVMLDLYADWCVACKEFEKYTFSDPQVQKALA-D-TVLLQANVTA----NDAQDV   81 (134)
T ss_dssp             CCCCEECCSHHHHHHHHHHHT--TSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTT-T-SEEEEEECTT----CCHHHH
T ss_pred             CCCcEEecCHHHHHHHHHHhc--CCcEEEEEECCCCHHHHHHHHHhcCCHHHHHHhc-C-cEEEEEeCCC----CcchHH
Confidence            35554 333456777776554  8999999999999999999999999999998888 4 9999998871    125678


Q ss_pred             HHHhhcCCCCCceEEEEeCCCCceE--EEEeCCCChHHHHHHHHH
Q 036413          203 KVCGYYKLDSLPVVLVIDPITGEKM--RKWCGMVDPVSLLEDLLS  245 (346)
Q Consensus       203 ~~~~~y~~~~~P~i~iidp~tge~l--~~~~G~~~~~~~i~~L~~  245 (346)
                      .++..|++..+|++.++|+ .|+.+  .++.|..++++|.+.|..
T Consensus        82 ~l~~~~~v~~~Pt~~~~d~-~G~~v~~~~~~G~~~~~~l~~~l~~  125 (134)
T 2fwh_A           82 ALLKHLNVLGLPTILFFDG-QGQEHPQARVTGFMDAETFSAHLRD  125 (134)
T ss_dssp             HHHHHTTCCSSSEEEEECT-TSCBCGGGCBCSCCCHHHHHHHHHH
T ss_pred             HHHHHcCCCCCCEEEEECC-CCCEeeeeeeeeccCHHHHHHHHHh
Confidence            8999999999999999996 68887  678899998877666654

>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2

Probab=98.88  E-value=3.4e-09  Score=88.57  Aligned_cols=56  Identities=25%  Similarity=0.452  Sum_probs=44.6

Q ss_pred             CCCCeeEEEEEcCCCccc---------------------cCCcceEEecCCCCCCCCcc-CCcccchhhcCCCc-eeEEE
Q 036413          287 ARNLVCRIGVRLPDGQEA---------------------NQTRQFRLTRPDPGAPKPLD-YNSKMTFQESGLNN-SVILV  343 (346)
Q Consensus       287 ~~~~~trIqiRlpdG~ri---------------------~~~~~f~l~~~~P~~~~~l~-~~~d~TieeagL~n-~~vl~  343 (346)
                      +.+++|+||||||||+|+                     .....|+|++.||+  +.+. .+.++||+|+||.+ ++|+|
T Consensus        39 ~~~~~t~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~~~~~~~F~L~t~fPr--k~l~~~d~~~TL~e~gL~psa~Liv  116 (124)
T 1wj4_A           39 VNGPKAQLMLRYPDGKREQITLPEQAKLLALVKHVQSKGYPNERFELLTNFPR--RKLSHLDYDITLQEAGLCPQETVFV  116 (124)
T ss_dssp             CSSCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHCCTTTEEEECSSSC--CEETSSCSSSCTTTTTCCSSBCCEE
T ss_pred             CCCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhcCCCCCCeEEecCCCC--cCCccCCCCCCHHHCCCCCceEEEE
Confidence            567899999999999997                     12478999999995  5564 47889999999997 44444


Q ss_pred             E
Q 036413          344 T  344 (346)
Q Consensus       344 ~  344 (346)
                      +
T Consensus       117 ~  117 (124)
T 1wj4_A          117 Q  117 (124)
T ss_dssp             E
T ss_pred             E
Confidence            3

>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens}

Probab=98.66  E-value=8.7e-08  Score=77.75  Aligned_cols=99  Identities=12%  Similarity=0.137  Sum_probs=80.5

Q ss_pred             HhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCCCCceEEEEe
Q 036413          141 VGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVLVID  220 (346)
Q Consensus       141 ~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~i~iid  220 (346)
                      .+..++|.+||++.++||..|+.+...+   ..+.+-++ .++.|+.++.+      ..+...++..|++..+|++.+++
T Consensus        21 ~~~~~~k~~lv~f~a~wC~~C~~~~~~l---~~~~~~~~-~~v~~~~v~~~------~d~~~~~~~~~~v~~~Pt~~~~~   90 (126)
T 2l57_A           21 EEAKEGIPTIIMFKTDTCPYCVEMQKEL---SYVSKERE-GKFNIYYARLE------EEKNIDLAYKYDANIVPTTVFLD   90 (126)
T ss_dssp             TTCCSSSCEEEEEECSSCHHHHHHHHHH---HHHHHHSS-SSCEEEEEETT------SSHHHHHHHHTTCCSSSEEEEEC
T ss_pred             HHHhCCCcEEEEEECCCCccHHHHHHHH---HHHHHHhc-CCeEEEEEeCC------CCchHHHHHHcCCcceeEEEEEC
Confidence            4567889999999999999999997544   45566666 78999999954      34556789999999999999999


Q ss_pred             CCCCceEEEEeCCCChHHHHHHHHHHHHcC
Q 036413          221 PITGEKMRKWCGMVDPVSLLEDLLSFMESG  250 (346)
Q Consensus       221 p~tge~l~~~~G~~~~~~~i~~L~~fl~~~  250 (346)
                      + .|+.+..+.|..+.++|.+.|.+.+...
T Consensus        91 ~-~G~~~~~~~G~~~~~~l~~~l~~~~~~~  119 (126)
T 2l57_A           91 K-EGNKFYVHQGLMRKNNIETILNSLGVKE  119 (126)
T ss_dssp             T-TCCEEEEEESCCCHHHHHHHHHHHCCCC
T ss_pred             C-CCCEEEEecCCCCHHHHHHHHHHHhccc
Confidence            7 6999989999989888877777665443

>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A

Probab=98.64  E-value=9.8e-08  Score=75.30  Aligned_cols=101  Identities=17%  Similarity=0.189  Sum_probs=81.1

Q ss_pred             ccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCC
Q 036413          132 NGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLD  211 (346)
Q Consensus       132 ~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~  211 (346)
                      ..+|++++..|++.+|.++|++.++||..|+.+...+   ..+.+-.. .++.|..++.+      .  ...++..|++.
T Consensus        10 ~~~~~~~l~~~~~~~~~~vv~f~~~~C~~C~~~~~~l---~~~~~~~~-~~~~~~~vd~~------~--~~~~~~~~~v~   77 (112)
T 1ep7_A           10 KAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLF---ETLSNDYA-GKVIFLKVDVD------A--VAAVAEAAGIT   77 (112)
T ss_dssp             HHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHH---HHHHHHTT-TTSEEEEEETT------T--THHHHHHHTCC
T ss_pred             HHHHHHHHHhhcccCCeEEEEEECCCCHHHHHHHHHH---HHHHHHcC-CCeEEEEEECC------c--hHHHHHHcCCC
Confidence            4568899988888899999999999999999996443   33444455 58999999887      3  35688999999


Q ss_pred             CCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHH
Q 036413          212 SLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFM  247 (346)
Q Consensus       212 ~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl  247 (346)
                      .+|++.++.  .|+.+..+.|. +++++.+.|.+.+
T Consensus        78 ~~Pt~~~~~--~G~~~~~~~G~-~~~~l~~~l~~~l  110 (112)
T 1ep7_A           78 AMPTFHVYK--DGVKADDLVGA-SQDKLKALVAKHA  110 (112)
T ss_dssp             BSSEEEEEE--TTEEEEEEESC-CHHHHHHHHHHHH
T ss_pred             cccEEEEEE--CCeEEEEEcCC-CHHHHHHHHHHHh
Confidence            999987773  69988889998 8888877777665

>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=98.59  E-value=2.8e-07  Score=74.87  Aligned_cols=115  Identities=17%  Similarity=0.301  Sum_probs=86.3

Q ss_pred             hhcCCCccc--ccccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCC
Q 036413          121 SLYRPPVDL--MFNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDD  198 (346)
Q Consensus       121 ~lf~PP~~l--~~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~  198 (346)
                      .+|.++..+  +-..+|++..   .+.+|.+||++.++||..|+.+...+   +.+.+-++ .++.|..++.+      .
T Consensus        11 ~l~~~~~~v~~l~~~~f~~~~---~~~~~~~lv~f~a~wC~~C~~~~~~~---~~~~~~~~-~~~~~~~vd~~------~   77 (130)
T 2dml_A           11 GLYSSSDDVIELTPSNFNREV---IQSDGLWLVEFYAPWCGHCQRLTPEW---KKAATALK-DVVKVGAVNAD------K   77 (130)
T ss_dssp             CSSCTTSSSEECCTTTHHHHT---TTCSSCEEEEEECTTCSTTGGGHHHH---HHHHHHTT-TTSEEEEEETT------T
T ss_pred             cccCCCCCcEECCHHHHHHHH---hcCCCeEEEEEECCCCHHHHhhCHHH---HHHHHHhc-CceEEEEEeCC------C
Confidence            344443333  3345566544   35689999999999999999996554   55666666 67888888877      3


Q ss_pred             hHHHHHHhhcCCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHHcCC
Q 036413          199 SECRKVCGYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMESGP  251 (346)
Q Consensus       199 ~eg~~~~~~y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~~~~  251 (346)
                        ...++..|++..+|++.++++ .|+.+..+.|..+.++|++.|.+.+...+
T Consensus        78 --~~~l~~~~~v~~~Pt~~~~~~-~~~~~~~~~G~~~~~~l~~~l~~~l~~~~  127 (130)
T 2dml_A           78 --HQSLGGQYGVQGFPTIKIFGA-NKNKPEDYQGGRTGEAIVDAALSALRSGP  127 (130)
T ss_dssp             --CHHHHHHHTCCSSSEEEEESS-CTTSCEECCSCCSHHHHHHHHHHHHHHSS
T ss_pred             --CHHHHHHcCCCccCEEEEEeC-CCCeEEEeecCCCHHHHHHHHHHHHhcCC
Confidence              246889999999999999996 35557778898999999999998887654

>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}

Probab=98.55  E-value=3.2e-07  Score=73.56  Aligned_cols=94  Identities=21%  Similarity=0.381  Sum_probs=70.5

Q ss_pred             ccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCC
Q 036413          132 NGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLD  211 (346)
Q Consensus       132 ~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~  211 (346)
                      .-+|++++..+  .+|+++|+++++||.+|+.|..-+   +.+.+..  .+++|..++++      .  ...++..|++.
T Consensus         8 ~~~f~~~l~~~--~~k~vvv~F~a~wC~~C~~~~p~~---~~~~~~~--~~~~~~~vd~d------~--~~~l~~~~~V~   72 (105)
T 3zzx_A            8 QEDFTKQLNEA--GNKLVVIDFYATWCGPCKMIAPKL---EELSQSM--SDVVFLKVDVD------E--CEDIAQDNQIA   72 (105)
T ss_dssp             HHHHHHHHHHT--TTSEEEEEEECTTCHHHHHHHHHH---HHHHHHC--TTEEEEEEETT------T--CHHHHHHTTCC
T ss_pred             HHHHHHHHHhc--CCCEEEEEEECCCCCCccCCCcch---hhhhhcc--CCeEEEEEecc------c--CHHHHHHcCCC
Confidence            34678887665  479999999999999999995332   2233333  36889988887      2  35689999999


Q ss_pred             CCceEEEEeCCCCceEEEEeCCCChHHHHHHH
Q 036413          212 SLPVVLVIDPITGEKMRKWCGMVDPVSLLEDL  243 (346)
Q Consensus       212 ~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L  243 (346)
                      ++|++.++.  .|+.+..+.|. ++++|.+.|
T Consensus        73 ~~PT~~~~~--~G~~v~~~~G~-~~~~l~~~i  101 (105)
T 3zzx_A           73 CMPTFLFMK--NGQKLDSLSGA-NYDKLLELV  101 (105)
T ss_dssp             BSSEEEEEE--TTEEEEEEESC-CHHHHHHHH
T ss_pred             eecEEEEEE--CCEEEEEEeCc-CHHHHHHHH
Confidence            999998884  69999999994 666554444

>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*

Probab=98.54  E-value=2.3e-07  Score=74.71  Aligned_cols=102  Identities=21%  Similarity=0.315  Sum_probs=77.9

Q ss_pred             CcccccccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhcc-CcEEEEEeecCCCCCCCChHHHHH
Q 036413          126 PVDLMFNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRA-SNFIFWQVYDDDDDDDDDSECRKV  204 (346)
Q Consensus       126 P~~l~~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~-~nFVfw~~~~~~~~~~~~~eg~~~  204 (346)
                      .....-.-+|++++..+  .+|++||++.++||..|+.+.      +.+.++.++ .++.|..++.+      .  ...+
T Consensus        13 ~~~~~t~~~f~~~l~~~--~~k~vlv~F~a~wC~~C~~~~------p~l~~l~~~~~~v~~~~vd~d------~--~~~l   76 (116)
T 3qfa_C           13 VKQIESKTAFQEALDAA--GDKLVVVDFSATWCGPSKMIK------PFFHSLSEKYSNVIFLEVDVD------D--CQDV   76 (116)
T ss_dssp             CBCCCCHHHHHHHHHHH--TTSCEEEEEECTTCHHHHHHH------HHHHHHHTTCTTSEEEEEETT------T--THHH
T ss_pred             ccCCCCHHHHHHHHHhc--CCCEEEEEEECCCCHHHHHHH------HHHHHHHHHCCCCEEEEEECC------C--CHHH
Confidence            33444566788877554  689999999999999999985      344444440 13788888877      2  3578


Q ss_pred             HhhcCCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHH
Q 036413          205 CGYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSF  246 (346)
Q Consensus       205 ~~~y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~f  246 (346)
                      +..|++..+|++.++  ..|+.+..+.|. ++++|.+.|.+.
T Consensus        77 ~~~~~v~~~Pt~~~~--~~G~~~~~~~G~-~~~~l~~~l~~~  115 (116)
T 3qfa_C           77 ASECEVKSMPTFQFF--KKGQKVGEFSGA-NKEKLEATINEL  115 (116)
T ss_dssp             HHHTTCCSSSEEEEE--SSSSEEEEEESC-CHHHHHHHHHHH
T ss_pred             HHHcCCccccEEEEE--eCCeEEEEEcCC-CHHHHHHHHHHh
Confidence            999999999999998  369999999998 888887777654

>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A

Probab=98.53  E-value=2.1e-07  Score=73.92  Aligned_cols=101  Identities=19%  Similarity=0.340  Sum_probs=82.1

Q ss_pred             cccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccC--cEEEEEeecCCCCCCCChHHHHHHhhc
Q 036413          131 FNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRAS--NFIFWQVYDDDDDDDDDSECRKVCGYY  208 (346)
Q Consensus       131 ~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~--nFVfw~~~~~~~~~~~~~eg~~~~~~y  208 (346)
                      -..+|++++..|+..+|+++|++.++||..|+.+.      +.+.++.+ +  ++.|..++.+      .  ...++..|
T Consensus        13 ~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~------~~l~~~~~-~~~~~~~~~v~~~------~--~~~~~~~~   77 (118)
T 2vm1_A           13 TKQEFDTHMANGKDTGKLVIIDFTASWCGPCRVIA------PVFAEYAK-KFPGAIFLKVDVD------E--LKDVAEAY   77 (118)
T ss_dssp             SHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHH------HHHHHHHH-HCTTSEEEEEETT------T--SHHHHHHT
T ss_pred             CHHHHHHHHHhcccCCCEEEEEEECCCCHhHHHHh------HHHHHHHH-HCCCcEEEEEEcc------c--CHHHHHHc
Confidence            45689999999999999999999999999999985      34455554 3  6888888777      3  35688999


Q ss_pred             CCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHHc
Q 036413          209 KLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMES  249 (346)
Q Consensus       209 ~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~~  249 (346)
                      ++..+|++.++.  .|+.+..+.| .+++++.+.|.+++..
T Consensus        78 ~v~~~Pt~~~~~--~g~~~~~~~g-~~~~~l~~~l~~~~~~  115 (118)
T 2vm1_A           78 NVEAMPTFLFIK--DGEKVDSVVG-GRKDDIHTKIVALMGS  115 (118)
T ss_dssp             TCCSBSEEEEEE--TTEEEEEEES-CCHHHHHHHHHHHHC-
T ss_pred             CCCcCcEEEEEe--CCeEEEEecC-CCHHHHHHHHHHHhcc
Confidence            999999998883  6998888899 5888888888887754

>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1

Probab=98.53  E-value=2.7e-07  Score=75.39  Aligned_cols=98  Identities=11%  Similarity=0.239  Sum_probs=79.1

Q ss_pred             cccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccC--cEEEEEeecCCCCCCCChHHHHHHhhc
Q 036413          131 FNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRAS--NFIFWQVYDDDDDDDDDSECRKVCGYY  208 (346)
Q Consensus       131 ~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~--nFVfw~~~~~~~~~~~~~eg~~~~~~y  208 (346)
                      -..+|++++..|+..+|+++|++.++||..|+.+..      .+.++.+ +  ++.|..++.+      .  ...++..|
T Consensus        23 ~~~~~~~~l~~~~~~~k~vvv~f~a~wC~~C~~~~~------~l~~l~~-~~~~v~~~~vd~d------~--~~~l~~~~   87 (124)
T 1xfl_A           23 TVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAP------FFADLAK-KLPNVLFLKVDTD------E--LKSVASDW   87 (124)
T ss_dssp             SHHHHHHHHHHHHHTTCEEEEEEECTTCHHHHHHHH------HHHHHHH-HCSSEEEEEEETT------T--SHHHHHHT
T ss_pred             CHHHHHHHHHHhhhcCCEEEEEEECCCCHHHHHHHH------HHHHHHH-HCCCcEEEEEECc------c--CHHHHHHc
Confidence            456799999999999999999999999999999953      3445444 2  6899998887      2  25688999


Q ss_pred             CCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHH
Q 036413          209 KLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSF  246 (346)
Q Consensus       209 ~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~f  246 (346)
                      ++..+|++.|+  ..|+.+..+.| .+++++.+.|.++
T Consensus        88 ~v~~~Pt~~~~--~~G~~~~~~~G-~~~~~l~~~l~~~  122 (124)
T 1xfl_A           88 AIQAMPTFMFL--KEGKILDKVVG-AKKDELQSTIAKH  122 (124)
T ss_dssp             TCCSSSEEEEE--ETTEEEEEEES-CCHHHHHHHHHHH
T ss_pred             CCCccCEEEEE--ECCEEEEEEeC-CCHHHHHHHHHHh
Confidence            99999998887  36999988999 4887777777654

>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=98.53  E-value=4.5e-07  Score=70.64  Aligned_cols=99  Identities=18%  Similarity=0.317  Sum_probs=77.9

Q ss_pred             cccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCC
Q 036413          131 FNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKL  210 (346)
Q Consensus       131 ~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~  210 (346)
                      -..+|++++.    ++|+++|++.++||..|+.+...+   ..+.+-.. .++.|..++.+      .  ...++..|++
T Consensus        10 ~~~~~~~~~~----~~~~~lv~f~~~~C~~C~~~~~~~---~~~~~~~~-~~~~~~~v~~~------~--~~~~~~~~~i   73 (109)
T 3tco_A           10 TEENFDEVIR----NNKLVLVDCWAEWCAPCHLYEPIY---KKVAEKYK-GKAVFGRLNVD------E--NQKIADKYSV   73 (109)
T ss_dssp             CTTTHHHHHH----HSSEEEEEEECTTCHHHHHHHHHH---HHHHHHTT-TTSEEEEEETT------T--CHHHHHHTTC
T ss_pred             cHHHHHHHHh----cCCeEEEEEECCCCHHHHhhhHHH---HHHHHHhC-CCceEEEEccc------c--CHHHHHhcCc
Confidence            4566777764    489999999999999999996322   33444445 67888888877      2  2468899999


Q ss_pred             CCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHH
Q 036413          211 DSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFM  247 (346)
Q Consensus       211 ~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl  247 (346)
                      ..+|++.++  ..|+.+....|..+.++|.+.|.+.+
T Consensus        74 ~~~Pt~~~~--~~g~~~~~~~g~~~~~~l~~~l~~~l  108 (109)
T 3tco_A           74 LNIPTTLIF--VNGQLVDSLVGAVDEDTLESTVNKYL  108 (109)
T ss_dssp             CSSSEEEEE--ETTEEEEEEESCCCHHHHHHHHHHHC
T ss_pred             ccCCEEEEE--cCCcEEEeeeccCCHHHHHHHHHHHh
Confidence            999999999  36999999999999988888887764

>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*

Probab=98.51  E-value=8.5e-08  Score=79.11  Aligned_cols=97  Identities=7%  Similarity=-0.003  Sum_probs=80.6

Q ss_pred             cCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCCCCceEEEEeCCCC
Q 036413          145 ENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVLVIDPITG  224 (346)
Q Consensus       145 ~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~i~iidp~tg  224 (346)
                      ..+.+||++.++||..|+.|.+.|.....+.+-.+  .+.+..++++      ......++..|++...|++++++  .|
T Consensus        17 ~~~~~LV~F~A~wC~~Ck~~~~~i~~~~~~~a~~~--~~~l~~vdv~------~~~~~~la~~~~V~g~PT~i~f~--~G   86 (116)
T 3dml_A           17 KAELRLLMFEQPGCLYCARWDAEIAPQYPLTDEGR--AAPVQRLQMR------DPLPPGLELARPVTFTPTFVLMA--GD   86 (116)
T ss_dssp             --CEEEEEEECTTCHHHHHHHHHTTTTGGGSHHHH--HSCEEEEETT------SCCCTTCBCSSCCCSSSEEEEEE--TT
T ss_pred             cCCCEEEEEECCCCHHHHHHHHHHHhhHHHhhhcc--cceEEEEECC------CCCchhHHHHCCCCCCCEEEEEE--CC
Confidence            34789999999999999999998888877665554  4667778888      44445678889999999999999  69


Q ss_pred             ceEEEEeCCCChHHHHHHHHHHHHcCC
Q 036413          225 EKMRKWCGMVDPVSLLEDLLSFMESGP  251 (346)
Q Consensus       225 e~l~~~~G~~~~~~~i~~L~~fl~~~~  251 (346)
                      +.+.++.|++.++.|+..|...+...+
T Consensus        87 ~ev~Ri~G~~~~~~f~~~L~~~l~~~~  113 (116)
T 3dml_A           87 VESGRLEGYPGEDFFWPMLARLIGQAE  113 (116)
T ss_dssp             EEEEEEECCCCHHHHHHHHHHHHHHHC
T ss_pred             EEEeeecCCCCHHHHHHHHHHHHhhcC
Confidence            999999999999999999999887654

>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1

Probab=98.51  E-value=2.9e-07  Score=72.49  Aligned_cols=101  Identities=14%  Similarity=0.251  Sum_probs=81.1

Q ss_pred             cccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhcc-CcEEEEEeecCCCCCCCChHHHHHHhhcC
Q 036413          131 FNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRA-SNFIFWQVYDDDDDDDDDSECRKVCGYYK  209 (346)
Q Consensus       131 ~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~-~nFVfw~~~~~~~~~~~~~eg~~~~~~y~  209 (346)
                      -..+|++++..|+..+|.++|++.++||..|+.+.      +.+.++.++ .++.|..++.+      .  ...++..|+
T Consensus        11 ~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~------~~l~~~~~~~~~v~~~~v~~~------~--~~~~~~~~~   76 (113)
T 1ti3_A           11 TVDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIA------PIFAELAKKFPNVTFLKVDVD------E--LKAVAEEWN   76 (113)
T ss_dssp             SHHHHHHHHHHHTTSSSEEEEEEECSSCHHHHHHH------HHHHHHHHHCSSEEEEEEETT------T--CHHHHHHHH
T ss_pred             cHHHHHHHHHHhhhcCCeEEEEEECCCCHHHHHHH------HHHHHHHHhCCCcEEEEEEcc------c--cHHHHHhCC
Confidence            35679999999999999999999999999999985      344455440 26889888877      3  246888899


Q ss_pred             CCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHH
Q 036413          210 LDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFME  248 (346)
Q Consensus       210 ~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~  248 (346)
                      +..+|++.++.  .|+.+..+.| .+++++.+.|.+++.
T Consensus        77 v~~~Pt~~~~~--~G~~~~~~~g-~~~~~l~~~l~~~~~  112 (113)
T 1ti3_A           77 VEAMPTFIFLK--DGKLVDKTVG-ADKDGLPTLVAKHAT  112 (113)
T ss_dssp             CSSTTEEEEEE--TTEEEEEEEC-CCTTHHHHHHHHHHH
T ss_pred             CCcccEEEEEe--CCEEEEEEec-CCHHHHHHHHHHhhc
Confidence            99999998884  6998888899 588888888877663

>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A

Probab=98.50  E-value=4.1e-07  Score=72.40  Aligned_cols=98  Identities=19%  Similarity=0.270  Sum_probs=77.8

Q ss_pred             cccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCC
Q 036413          131 FNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKL  210 (346)
Q Consensus       131 ~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~  210 (346)
                      -..+|++++     .+|.++|++.++||..|+.+...+   +.+.+-++ .++.|..++.+.      .  ..++..|++
T Consensus         7 ~~~~~~~~~-----~~~~~lv~f~a~wC~~C~~~~~~l---~~~~~~~~-~~v~~~~vd~~~------~--~~l~~~~~v   69 (112)
T 2voc_A            7 TDQSFSAET-----SEGVVLADFWAPWCGPSKMIAPVL---EELDQEMG-DKLKIVKIDVDE------N--QETAGKYGV   69 (112)
T ss_dssp             CTTTHHHHH-----SSSEEEEEEECTTBGGGGGHHHHH---HHHHHHHT-TTCEEEEEETTT------C--CSHHHHTTC
T ss_pred             cHHHHHHHh-----CCCEEEEEEECCCCHHHHHHHHHH---HHHHHHhC-CCcEEEEEECCC------C--HHHHHHcCC
Confidence            456788877     789999999999999999996554   45566666 689999998882      2  358889999


Q ss_pred             CCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHH
Q 036413          211 DSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFM  247 (346)
Q Consensus       211 ~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl  247 (346)
                      ..+|++.++ . .|+.+..+.|..+.++|.+.|.+.+
T Consensus        70 ~~~Pt~~~~-~-~G~~~~~~~G~~~~~~l~~~l~~~~  104 (112)
T 2voc_A           70 MSIPTLLVL-K-DGEVVETSVGFKPKEALQELVNKHL  104 (112)
T ss_dssp             CSBSEEEEE-E-TTEEEEEEESCCCHHHHHHHHHTTS
T ss_pred             CcccEEEEE-e-CCEEEEEEeCCCCHHHHHHHHHHHH
Confidence            999999999 3 6999989999988876666555443

>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0

Probab=98.50  E-value=7.4e-07  Score=69.90  Aligned_cols=92  Identities=20%  Similarity=0.263  Sum_probs=75.8

Q ss_pred             hhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCCCCceEEEEeCC
Q 036413          143 SDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVLVIDPI  222 (346)
Q Consensus       143 k~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~i~iidp~  222 (346)
                      ...+|.++|++.++||..|+.+...+   +.+.+... .++.|..++.+      .  ...++..|++..+|++.++.  
T Consensus        19 ~~~~~~vlv~f~a~~C~~C~~~~~~~---~~~~~~~~-~~v~~~~vd~~------~--~~~l~~~~~v~~~Pt~~~~~--   84 (111)
T 3gnj_A           19 YDEGKACLVMFSRKNCHVCQKVTPVL---EELRLNYE-ESFGFYYVDVE------E--EKTLFQRFSLKGVPQILYFK--   84 (111)
T ss_dssp             TTSCCCEEEEEECSSCHHHHHHHHHH---HHHHHHTT-TTSEEEEEETT------T--CHHHHHHTTCCSSCEEEEEE--
T ss_pred             HhcCCEEEEEEeCCCChhHHHHHHHH---HHHHHHcC-CceEEEEEECC------c--ChhHHHhcCCCcCCEEEEEE--
Confidence            35679999999999999999996544   45555556 67999999888      3  24688999999999999994  


Q ss_pred             CCceEEEEeCCCChHHHHHHHHHHHH
Q 036413          223 TGEKMRKWCGMVDPVSLLEDLLSFME  248 (346)
Q Consensus       223 tge~l~~~~G~~~~~~~i~~L~~fl~  248 (346)
                      .|+.+..+.|..+.+++.+.|.+.+.
T Consensus        85 ~g~~~~~~~g~~~~~~l~~~l~~~l~  110 (111)
T 3gnj_A           85 DGEYKGKMAGDVEDDEVEQMIADVLE  110 (111)
T ss_dssp             TTEEEEEEESSCCHHHHHHHHHHHHH
T ss_pred             CCEEEEEEeccCCHHHHHHHHHHHhc
Confidence            69999889999999999888888764

>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*

Probab=98.50  E-value=4.5e-07  Score=72.80  Aligned_cols=107  Identities=9%  Similarity=0.209  Sum_probs=82.2

Q ss_pred             CcccccccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHH
Q 036413          126 PVDLMFNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVC  205 (346)
Q Consensus       126 P~~l~~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~  205 (346)
                      ...+.-..+|++++..|+..+|+++|++.++||..|+.+... |  ..+.+-..  ++.|..++.+      .  ...++
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~-l--~~~~~~~~--~~~~~~vd~~------~--~~~~~   80 (122)
T 2vlu_A           14 VISVHSLEQWTMQIEEANTAKKLVVIDFTASWCGPCRIMAPV-F--ADLAKKFP--NAVFLKVDVD------E--LKPIA   80 (122)
T ss_dssp             CEEECSHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHH-H--HHHHHHCT--TSEEEEEETT------T--CHHHH
T ss_pred             ceeccCHHHHHHHHHHhhccCCEEEEEEECCCCHHHHHHHHH-H--HHHHHHCC--CcEEEEEECC------C--CHHHH
Confidence            344455678999999999999999999999999999998532 2  12333333  3888888877      3  24688


Q ss_pred             hhcCCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHH
Q 036413          206 GYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFME  248 (346)
Q Consensus       206 ~~y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~  248 (346)
                      ..|++..+|++.++.  .|+.+..+.|.. +++|.+.|.+.+.
T Consensus        81 ~~~~v~~~Pt~~~~~--~G~~~~~~~G~~-~~~l~~~l~~~l~  120 (122)
T 2vlu_A           81 EQFSVEAMPTFLFMK--EGDVKDRVVGAI-KEELTAKVGLHAA  120 (122)
T ss_dssp             HHTTCCSSSEEEEEE--TTEEEEEEESSC-HHHHHHHHHHHHS
T ss_pred             HHcCCCcccEEEEEe--CCEEEEEEeCcC-HHHHHHHHHHHhc
Confidence            999999999987773  699888899987 8878777777654

>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A

Probab=98.48  E-value=7.1e-07  Score=71.91  Aligned_cols=98  Identities=17%  Similarity=0.224  Sum_probs=75.7

Q ss_pred             HHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCCCCce
Q 036413          136 EKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPV  215 (346)
Q Consensus       136 ~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~  215 (346)
                      ++......+.+|.+||++.++||..|+.+...+   ..+.+-+. .++.|..++.+      ..  ..++..|++..+|+
T Consensus        21 ~~f~~~v~~~~k~vlv~f~a~~C~~C~~~~~~l---~~~~~~~~-~~v~~~~vd~d------~~--~~l~~~~~v~~~Pt   88 (119)
T 1w4v_A           21 PDFQDRVVNSETPVVVDFHAQWCGPCKILGPRL---EKMVAKQH-GKVVMAKVDID------DH--TDLAIEYEVSAVPT   88 (119)
T ss_dssp             HHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHH---HHHHHHTT-TSSEEEEEETT------TT--HHHHHHTTCCSSSE
T ss_pred             hhHHHHHHcCCCcEEEEEECCCCHHHHHHHHHH---HHHHHHhc-CCeEEEEEeCC------CC--HHHHHHcCCCcccE
Confidence            333444456789999999999999999996443   23444445 67999998887      32  46889999999999


Q ss_pred             EEEEeCCCCceEEEEeCCCChHHHHHHHHHHH
Q 036413          216 VLVIDPITGEKMRKWCGMVDPVSLLEDLLSFM  247 (346)
Q Consensus       216 i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl  247 (346)
                      +.++  ..|+.+..+.|..+++.+.+.|.+.+
T Consensus        89 ~~~~--~~G~~~~~~~G~~~~~~l~~~l~~~l  118 (119)
T 1w4v_A           89 VLAM--KNGDVVDKFVGIKDEDQLEAFLKKLI  118 (119)
T ss_dssp             EEEE--ETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred             EEEE--eCCcEEEEEcCCCCHHHHHHHHHHHh
Confidence            9999  37998888999889888887777654

>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A

Probab=98.47  E-value=4.7e-07  Score=70.35  Aligned_cols=97  Identities=16%  Similarity=0.204  Sum_probs=77.5

Q ss_pred             ccccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcC
Q 036413          130 MFNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYK  209 (346)
Q Consensus       130 ~~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~  209 (346)
                      +-..+|++++     .+|.++|++.++||..|+.+...+   ..+.+-++ +++.|..++.+      .  ...++..|+
T Consensus         8 l~~~~~~~~~-----~~~~~lv~f~~~~C~~C~~~~~~~---~~~~~~~~-~~~~~~~v~~~------~--~~~~~~~~~   70 (106)
T 3die_A            8 VTDADFDSKV-----ESGVQLVDFWATACGPCKMIAPVL---EELAADYE-GKADILKLDVD------E--NPSTAAKYE   70 (106)
T ss_dssp             CCTTTHHHHS-----CSSEEEEEEECSBCHHHHHHHHHH---HHHHHHTT-TTCEEEEEETT------T--CHHHHHHTT
T ss_pred             CCHHHHHHHh-----cCCcEEEEEECCCCHHHHHHhHHH---HHHHHHhc-CCcEEEEEECC------c--CHHHHHhCC
Confidence            3456777777     789999999999999999996544   55555566 67888888877      2  246889999


Q ss_pred             CCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHH
Q 036413          210 LDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLS  245 (346)
Q Consensus       210 ~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~  245 (346)
                      +..+|++.++.  .|+.+..+.|..+.+++.+.|.+
T Consensus        71 v~~~Pt~~~~~--~G~~~~~~~g~~~~~~l~~~l~~  104 (106)
T 3die_A           71 VMSIPTLIVFK--DGQPVDKVVGFQPKENLAEVLDK  104 (106)
T ss_dssp             CCSBSEEEEEE--TTEEEEEEESCCCHHHHHHHHHT
T ss_pred             CcccCEEEEEe--CCeEEEEEeCCCCHHHHHHHHHH
Confidence            99999999996  69999999998888777766654

>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1

Probab=98.47  E-value=7.8e-07  Score=70.09  Aligned_cols=100  Identities=13%  Similarity=0.143  Sum_probs=79.8

Q ss_pred             ccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCC
Q 036413          132 NGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLD  211 (346)
Q Consensus       132 ~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~  211 (346)
                      ..+|++..   ...+|.++|++.++||..|+.+...+   +.+.+... .++.|..++.+      ..  ..++..|++.
T Consensus        14 ~~~~~~~~---~~~~~~~lv~f~~~~C~~C~~~~~~l---~~~~~~~~-~~v~~~~v~~~------~~--~~~~~~~~v~   78 (115)
T 1thx_A           14 DAEFESEV---LKAEQPVLVYFWASWCGPCQLMSPLI---NLAANTYS-DRLKVVKLEID------PN--PTTVKKYKVE   78 (115)
T ss_dssp             GGGHHHHT---TTCSSCEEEEEECTTCTTHHHHHHHH---HHHHHHTT-TTCEEEEEEST------TC--HHHHHHTTCC
T ss_pred             ccchhhHh---hcCCceEEEEEECCCCHHHHHhHHHH---HHHHHHhC-CcEEEEEEEcC------CC--HHHHHHcCCC
Confidence            34555544   46789999999999999999996544   45555566 67999998887      32  4688999999


Q ss_pred             CCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHH
Q 036413          212 SLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFME  248 (346)
Q Consensus       212 ~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~  248 (346)
                      .+|++.++ + .|+.+..+.|..+.+++.+.|.+.+.
T Consensus        79 ~~Pt~~~~-~-~G~~~~~~~g~~~~~~l~~~l~~~l~  113 (115)
T 1thx_A           79 GVPALRLV-K-GEQILDSTEGVISKDKLLSFLDTHLN  113 (115)
T ss_dssp             SSSEEEEE-E-TTEEEEEEESCCCHHHHHHHHHHHHC
T ss_pred             ceeEEEEE-c-CCEEEEEecCCCCHHHHHHHHHHHhc
Confidence            99999999 3 79998889999899888888887764

>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A

Probab=98.47  E-value=4.5e-07  Score=74.76  Aligned_cols=105  Identities=13%  Similarity=0.236  Sum_probs=84.3

Q ss_pred             ccccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhc-cCcEEEEEeecCCCCCCCChHHHHHHhhc
Q 036413          130 MFNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIR-ASNFIFWQVYDDDDDDDDDSECRKVCGYY  208 (346)
Q Consensus       130 ~~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~-~~nFVfw~~~~~~~~~~~~~eg~~~~~~y  208 (346)
                      ....+|++++..|+..+|+++|++.++||..|+.+..      .+.++.+ -.++.|..++.+      .  ...++..|
T Consensus        30 ~~~~~~~~~~~~~~~~~k~vvv~f~a~wC~~C~~~~~------~l~~l~~~~~~v~~~~v~~~------~--~~~~~~~~   95 (139)
T 3d22_A           30 TTKERWDQKLSEASRDGKIVLANFSARWCGPSRQIAP------YYIELSENYPSLMFLVIDVD------E--LSDFSASW   95 (139)
T ss_dssp             CSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHH------HHHHHHHHCTTSEEEEEETT------T--SHHHHHHT
T ss_pred             CCHHHHHHHHHHHhhcCCEEEEEEECCCCHHHHHHHH------HHHHHHHHCCCCEEEEEeCc------c--cHHHHHHc
Confidence            3457899999999999999999999999999999964      3444443 025888888887      3  25688999


Q ss_pred             CCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHHcCC
Q 036413          209 KLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMESGP  251 (346)
Q Consensus       209 ~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~~~~  251 (346)
                      ++..+|++.++  ..|+.+..+.|. +++++.+.|.+.+..-+
T Consensus        96 ~v~~~Pt~~~~--~~G~~~~~~~G~-~~~~l~~~l~~~~~~~~  135 (139)
T 3d22_A           96 EIKATPTFFFL--RDGQQVDKLVGA-NKPELHKKITAILDSLP  135 (139)
T ss_dssp             TCCEESEEEEE--ETTEEEEEEESC-CHHHHHHHHHHHHHTSC
T ss_pred             CCCcccEEEEE--cCCeEEEEEeCC-CHHHHHHHHHHHhccCC
Confidence            99999999888  379999899998 88888888888876544

>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1

Probab=98.46  E-value=7.4e-07  Score=69.58  Aligned_cols=98  Identities=15%  Similarity=0.286  Sum_probs=75.8

Q ss_pred             HHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCCCCce
Q 036413          136 EKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPV  215 (346)
Q Consensus       136 ~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~  215 (346)
                      ++......+.+|.++|++.++||..|+.+...+   +.+.+-++ .++.|..++.+      .  ...++..|++..+|+
T Consensus         9 ~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l---~~~~~~~~-~~~~~~~v~~~------~--~~~~~~~~~v~~~Pt   76 (107)
T 1dby_A            9 DTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVV---DEIAGEYK-DKLKCVKLNTD------E--SPNVASEYGIRSIPT   76 (107)
T ss_dssp             HHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHH---HHHHHHTT-TTCEEEEEETT------T--CHHHHHHHTCCSSCE
T ss_pred             HHHHHHHhcCCCcEEEEEECCCCHhHHHHHHHH---HHHHHHhC-CceEEEEEECC------C--CHHHHHHCCCCcCCE
Confidence            333444556789999999999999999996543   44555555 67889888877      3  246888999999999


Q ss_pred             EEEEeCCCCceEEEEeCCCChHHHHHHHHHHH
Q 036413          216 VLVIDPITGEKMRKWCGMVDPVSLLEDLLSFM  247 (346)
Q Consensus       216 i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl  247 (346)
                      +.++  ..|+.+..+.|..+.+++.+.|.+.+
T Consensus        77 ~~~~--~~G~~~~~~~G~~~~~~l~~~l~~~l  106 (107)
T 1dby_A           77 IMVF--KGGKKCETIIGAVPKATIVQTVEKYL  106 (107)
T ss_dssp             EEEE--SSSSEEEEEESCCCHHHHHHHHHHHC
T ss_pred             EEEE--eCCEEEEEEeCCCCHHHHHHHHHHHh
Confidence            8877  37999988999988888877777654

>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti}

Probab=98.45  E-value=5.9e-07  Score=69.86  Aligned_cols=97  Identities=15%  Similarity=0.212  Sum_probs=76.5

Q ss_pred             ccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCC
Q 036413          132 NGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLD  211 (346)
Q Consensus       132 ~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~  211 (346)
                      ..+|+++.   .+.+|.++|++.++||..|+.+...+   +.+.+-+. .++.|..++.+      ..  ..++..|++.
T Consensus         9 ~~~~~~~~---~~~~~~~lv~f~~~~C~~C~~~~~~~---~~~~~~~~-~~~~~~~v~~~------~~--~~~~~~~~v~   73 (107)
T 2i4a_A            9 DSSFDQDV---LKASGLVLVDFWAEWCGPCKMIGPAL---GEIGKEFA-GKVTVAKVNID------DN--PETPNAYQVR   73 (107)
T ss_dssp             TTTHHHHT---TTCSSEEEEEEECTTCHHHHHHHHHH---HHHHHHHT-TSEEEEEEETT------TC--CHHHHHTTCC
T ss_pred             hhhhhHHH---HhCCCEEEEEEECCCChhHHHHhHHH---HHHHHHhC-CcEEEEEEECC------CC--HHHHHhcCCC
Confidence            34565544   46789999999999999999996554   45556666 68999999888      22  3688899999


Q ss_pred             CCceEEEEeCCCCceEEEEeCCCChHHHHHHHHH
Q 036413          212 SLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLS  245 (346)
Q Consensus       212 ~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~  245 (346)
                      .+|++.++  ..|+.+..+.|..+.+.+.+.|.+
T Consensus        74 ~~Pt~~~~--~~G~~~~~~~G~~~~~~l~~~l~~  105 (107)
T 2i4a_A           74 SIPTLMLV--RDGKVIDKKVGALPKSQLKAWVES  105 (107)
T ss_dssp             SSSEEEEE--ETTEEEEEEESCCCHHHHHHHHHH
T ss_pred             ccCEEEEE--eCCEEEEEecCCCCHHHHHHHHHh
Confidence            99999999  369999889998888877766654

>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ...

Probab=98.44  E-value=9.3e-07  Score=69.13  Aligned_cols=99  Identities=14%  Similarity=0.174  Sum_probs=77.0

Q ss_pred             ccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCC
Q 036413          132 NGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLD  211 (346)
Q Consensus       132 ~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~  211 (346)
                      ..+|++..   .+.+|.++|++.++||..|+.+...+   ..+.+-.+ .++.|..++.+      ..  ..++..|++.
T Consensus         9 ~~~f~~~~---~~~~~~~~v~f~~~~C~~C~~~~~~l---~~~~~~~~-~~~~~~~v~~~------~~--~~~~~~~~v~   73 (108)
T 2trx_A            9 DDSFDTDV---LKADGAILVDFWAEWCGPCKMIAPIL---DEIADEYQ-GKLTVAKLNID------QN--PGTAPKYGIR   73 (108)
T ss_dssp             TTTHHHHT---TTCSSEEEEEEECTTCHHHHHHHHHH---HHHHHHTT-TTEEEEEEETT------TC--TTHHHHTTCC
T ss_pred             hhhHHHHH---HhcCCeEEEEEECCCCHhHHHHHHHH---HHHHHHhC-CCcEEEEEECC------CC--HHHHHHcCCc
Confidence            34555443   46789999999999999999996543   34555555 68999999887      22  3578899999


Q ss_pred             CCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHH
Q 036413          212 SLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFM  247 (346)
Q Consensus       212 ~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl  247 (346)
                      .+|++.++ + .|+.+..+.|..++++|.+.|.+.+
T Consensus        74 ~~Pt~~~~-~-~G~~~~~~~G~~~~~~l~~~l~~~l  107 (108)
T 2trx_A           74 GIPTLLLF-K-NGEVAATKVGALSKGQLKEFLDANL  107 (108)
T ss_dssp             SSSEEEEE-E-TTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred             ccCEEEEE-e-CCEEEEEEecCCCHHHHHHHHHHhh
Confidence            99999999 3 7999888999989888887777654

>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}

Probab=98.44  E-value=1.1e-06  Score=73.40  Aligned_cols=103  Identities=11%  Similarity=0.169  Sum_probs=82.9

Q ss_pred             cccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCC
Q 036413          131 FNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKL  210 (346)
Q Consensus       131 ~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~  210 (346)
                      -..+|++++    ..+|++||++.++||..|+.+...+   ..+.+-++ .++.|..++.+      .  ...++..|++
T Consensus        44 ~~~~~~~~~----~~~k~vlv~F~a~wC~~C~~~~p~l---~~~~~~~~-~~~~~~~vd~~------~--~~~l~~~~~v  107 (148)
T 3p2a_A           44 TAETLDKLL----QDDLPMVIDFWAPWCGPCRSFAPIF---AETAAERA-GKVRFVKVNTE------A--EPALSTRFRI  107 (148)
T ss_dssp             CTTTHHHHT----TCSSCEEEEEECSSCHHHHHHHHHH---HHHHHHTT-TTCEEEEEETT------T--CHHHHHHTTC
T ss_pred             CHHHHHHHH----hcCCcEEEEEECCCCHHHHHHHHHH---HHHHHHcC-CceEEEEEECc------C--CHHHHHHCCC
Confidence            355677666    7789999999999999999995433   34444555 67899998877      3  2468899999


Q ss_pred             CCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHHcCC
Q 036413          211 DSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMESGP  251 (346)
Q Consensus       211 ~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~~~~  251 (346)
                      ..+|++.++.  .|+.+..+.|..+.+.|.+.|.+.+...+
T Consensus       108 ~~~Pt~~~~~--~G~~~~~~~G~~~~~~l~~~l~~~l~~~~  146 (148)
T 3p2a_A          108 RSIPTIMLYR--NGKMIDMLNGAVPKAPFDNWLDEQLSRDP  146 (148)
T ss_dssp             CSSSEEEEEE--TTEEEEEESSCCCHHHHHHHHHHHHHSCC
T ss_pred             CccCEEEEEE--CCeEEEEEeCCCCHHHHHHHHHHHhcccC
Confidence            9999999995  69999999999999999999998887643

>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A

Probab=98.43  E-value=5.4e-07  Score=70.04  Aligned_cols=98  Identities=12%  Similarity=0.230  Sum_probs=76.6

Q ss_pred             ccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCC
Q 036413          132 NGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLD  211 (346)
Q Consensus       132 ~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~  211 (346)
                      ..+|++++    +.+|+++|++.++||..|+.+...+   +.+.+-+. .++.|..++.+      ..  ..++..|++.
T Consensus         8 ~~~~~~~~----~~~~~~lv~f~~~~C~~C~~~~~~l---~~~~~~~~-~~~~~~~v~~~------~~--~~~~~~~~v~   71 (109)
T 2yzu_A            8 DQNFDETL----GQHPLVLVDFWAEWCAPCRMIAPIL---EEIAKEYE-GKLLVAKLDVD------EN--PKTAMRYRVM   71 (109)
T ss_dssp             TTTHHHHH----HHCSEEEEEEECTTCHHHHHHHHHH---HHHHHHTB-TTBEEEEEETT------TC--HHHHHHTTCC
T ss_pred             HhHHHHHh----cCCCeEEEEEECCCCHHHHHhhHHH---HHHHHHhh-CceEEEEEECC------CC--HhHHHhCCCC
Confidence            44566554    4689999999999999999996543   45555566 68999999887      32  4688999999


Q ss_pred             CCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHH
Q 036413          212 SLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFM  247 (346)
Q Consensus       212 ~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl  247 (346)
                      .+|++.++  ..|+.+..+.|..+.+++.+.|.+.+
T Consensus        72 ~~Pt~~~~--~~g~~~~~~~g~~~~~~l~~~l~~~l  105 (109)
T 2yzu_A           72 SIPTVILF--KDGQPVEVLVGAQPKRNYQAKIEKHL  105 (109)
T ss_dssp             SSSEEEEE--ETTEEEEEEESCCCHHHHHHHHHTTC
T ss_pred             cCCEEEEE--eCCcEeeeEeCCCCHHHHHHHHHHHh
Confidence            99999999  36998888999888877777666544

>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A

Probab=98.42  E-value=1.1e-06  Score=67.45  Aligned_cols=98  Identities=15%  Similarity=0.198  Sum_probs=76.0

Q ss_pred             ccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCC
Q 036413          132 NGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLD  211 (346)
Q Consensus       132 ~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~  211 (346)
                      ..+|++++    +.+|.++|++.++||..|+.+...+   ..+.+-+. + +.|..++.+      .  ...++..|++.
T Consensus         6 ~~~~~~~~----~~~~~~~v~f~~~~C~~C~~~~~~~---~~~~~~~~-~-~~~~~v~~~------~--~~~~~~~~~v~   68 (104)
T 2e0q_A            6 SKNFDSFL----ASHEIAVVDFWAEWCAPCLILAPII---EELAEDYP-Q-VGFGKLNSD------E--NPDIAARYGVM   68 (104)
T ss_dssp             TTTHHHHH----HHSSEEEEEEECTTCHHHHHHHHHH---HHHHHHCT-T-SEEEEEETT------T--CHHHHHHTTCC
T ss_pred             HHHHHHHH----hcCCcEEEEEECCCChhHHHHhHHH---HHHHHHcC-C-ceEEEEECC------C--CHHHHHhCCcc
Confidence            45677777    4689999999999999999995432   23334444 4 888888877      2  24688999999


Q ss_pred             CCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHH
Q 036413          212 SLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFME  248 (346)
Q Consensus       212 ~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~  248 (346)
                      .+|++.++  ..|+.+..+.|..+.+.+.+.|.+.+.
T Consensus        69 ~~Pt~~~~--~~g~~~~~~~g~~~~~~l~~~l~~~l~  103 (104)
T 2e0q_A           69 SLPTVIFF--KDGEPVDEIIGAVPREEIEIRIKNLLG  103 (104)
T ss_dssp             SSCEEEEE--ETTEEEEEEESCCCHHHHHHHHHHHHT
T ss_pred             ccCEEEEE--ECCeEhhhccCCCCHHHHHHHHHHHhc
Confidence            99999999  369988889998898888888877664

>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae}

Probab=98.42  E-value=1e-06  Score=69.65  Aligned_cols=98  Identities=14%  Similarity=0.320  Sum_probs=73.0

Q ss_pred             cCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhc---cCcEEEEEeecCCCCCCCChHHHHHHhhcC
Q 036413          133 GSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIR---ASNFIFWQVYDDDDDDDDDSECRKVCGYYK  209 (346)
Q Consensus       133 gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~---~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~  209 (346)
                      .+|++++.. +..+|+++|++.++||..|+.+..      .+.++.+   ..++.|..++.+      ..  ..++..|+
T Consensus         9 ~~~~~~~~~-~~~~~~~~v~f~a~wC~~C~~~~~------~~~~~~~~~~~~~~~~~~vd~~------~~--~~~~~~~~   73 (112)
T 3d6i_A            9 EQFTYLTTT-AAGDKLIVLYFHTSWAEPCKALKQ------VFEAISNEPSNSNVSFLSIDAD------EN--SEISELFE   73 (112)
T ss_dssp             HHHHHHHTT-TTTTCCEEEEEECCC--CHHHHHH------HHHHHHHCGGGTTSEEEEEETT------TC--HHHHHHTT
T ss_pred             HHHHHHHhc-ccCCCEEEEEEECCCCHHHHHHHH------HHHHHHHhcCCCCEEEEEEecc------cC--HHHHHHcC
Confidence            457777765 567899999999999999999864      3444443   147999999887      32  46888999


Q ss_pred             CCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHH
Q 036413          210 LDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFME  248 (346)
Q Consensus       210 ~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~  248 (346)
                      +..+|++.++.  .|+.+..+.|. .++++.+.|.+.+.
T Consensus        74 v~~~Pt~~~~~--~G~~~~~~~G~-~~~~l~~~l~~~~~  109 (112)
T 3d6i_A           74 ISAVPYFIIIH--KGTILKELSGA-DPKEYVSLLEDCKN  109 (112)
T ss_dssp             CCSSSEEEEEE--TTEEEEEECSC-CHHHHHHHHHHHHH
T ss_pred             CCcccEEEEEE--CCEEEEEecCC-CHHHHHHHHHHHHh
Confidence            99999998884  69999999996 55567666666653

>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A

Probab=98.42  E-value=2.3e-07  Score=72.25  Aligned_cols=95  Identities=13%  Similarity=0.181  Sum_probs=73.4

Q ss_pred             cCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCCC
Q 036413          133 GSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDS  212 (346)
Q Consensus       133 gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~  212 (346)
                      .+|+++    .+.+|.++|++.++||..|+.+...+   +.+.+-.. .++.|..++.+      .  ...++..|++..
T Consensus         8 ~~~~~~----~~~~~~~~v~f~~~~C~~C~~~~~~l---~~~~~~~~-~~v~~~~v~~~------~--~~~~~~~~~v~~   71 (105)
T 1nsw_A            8 ANFQQA----IQGDGPVLVDFWAAWCGPCRMMAPVL---EEFAEAHA-DKVTVAKLNVD------E--NPETTSQFGIMS   71 (105)
T ss_dssp             TTHHHH----HSSSSCEEEEEECTTCHHHHHHHHHH---HHHHHHST-TTCEEEEEETT------T--CHHHHHHTTCCS
T ss_pred             HhHHHH----HhCCCcEEEEEECCCCHHHHHHHHHH---HHHHHHhc-CCcEEEEEECc------C--CHHHHHHcCCcc
Confidence            445543    45679999999999999999996544   45555556 67899998887      3  246889999999


Q ss_pred             CceEEEEeCCCCceEEEEeCCCChHHHHHHHHH
Q 036413          213 LPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLS  245 (346)
Q Consensus       213 ~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~  245 (346)
                      +|++.++ + .|+.+..+.|..+++++.+.|.+
T Consensus        72 ~Pt~~~~-~-~G~~~~~~~G~~~~~~l~~~l~~  102 (105)
T 1nsw_A           72 IPTLILF-K-GGRPVKQLIGYQPKEQLEAQLAD  102 (105)
T ss_dssp             SSEEEEE-E-TTEEEEEEESCCCHHHHHHHTTT
T ss_pred             ccEEEEE-e-CCeEEEEEecCCCHHHHHHHHHH
Confidence            9999999 3 69988889998888776665543

>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A

Probab=98.41  E-value=6e-07  Score=74.02  Aligned_cols=90  Identities=13%  Similarity=0.135  Sum_probs=72.7

Q ss_pred             cCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCCCCceEEEEeCCCC
Q 036413          145 ENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVLVIDPITG  224 (346)
Q Consensus       145 ~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~i~iidp~tg  224 (346)
                      .+|.+||++.++||..|+.+...+   ..+.+-+. .++.|+.++.+      .  ...++..|++..+|++.++++ .|
T Consensus        50 ~~k~vlv~f~a~wC~~C~~~~~~~---~~~~~~~~-~~~~~~~v~~~------~--~~~~~~~~~v~~~Pt~~~~~~-~g  116 (141)
T 3hxs_A           50 GDKPAIVDFYADWCGPCKMVAPIL---EELSKEYA-GKIYIYKVNVD------K--EPELARDFGIQSIPTIWFVPM-KG  116 (141)
T ss_dssp             CSSCEEEEEECTTCTTHHHHHHHH---HHHHHHTT-TTCEEEEEETT------T--CHHHHHHTTCCSSSEEEEECS-SS
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHH---HHHHHHhc-CceEEEEEECC------C--CHHHHHHcCCCCcCEEEEEeC-CC
Confidence            689999999999999999996544   55555566 78999998887      3  246899999999999999996 57


Q ss_pred             ceEEEEeCCCChHHHHHHHHHHHH
Q 036413          225 EKMRKWCGMVDPVSLLEDLLSFME  248 (346)
Q Consensus       225 e~l~~~~G~~~~~~~i~~L~~fl~  248 (346)
                      +.+ ...|..+.++|.+.|.+.+.
T Consensus       117 ~~~-~~~G~~~~~~l~~~l~~~l~  139 (141)
T 3hxs_A          117 EPQ-VNMGALSKEQLKGYIDKVLL  139 (141)
T ss_dssp             CCE-EEESCCCHHHHHHHHHHTTC
T ss_pred             CEE-EEeCCCCHHHHHHHHHHHHc
Confidence            765 77898898888877776553

>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus}

Probab=98.41  E-value=8.5e-07  Score=73.24  Aligned_cols=107  Identities=12%  Similarity=0.174  Sum_probs=81.7

Q ss_pred             ccCHHHHHHHhh--------hcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHH
Q 036413          132 NGSFEKAKDVGS--------DENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRK  203 (346)
Q Consensus       132 ~gsf~~A~~~Ak--------~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~  203 (346)
                      ..+|.+.+..+.        +.+|.+||++.++||..|+.+...+   ..+.+-++ .++.|..++.+      ..  ..
T Consensus        16 ~~~f~~~v~~~~~~~~~~~~~~~k~~lv~f~a~wC~~C~~~~~~l---~~l~~~~~-~~v~~~~vd~~------~~--~~   83 (136)
T 2l5l_A           16 KAEFLAKVYNFEKNPEEWKYEGDKPAIVDFYADWCGPCKMVAPIL---DELAKEYD-GQIVIYKVDTE------KE--QE   83 (136)
T ss_dssp             HHHHHHHTBCTTTCSSSCCBCCSSCEEEEEECTTSHHHHHHHHHH---HHHHHHTT-TTCEEEEEETT------TC--HH
T ss_pred             chHHHHHHHhhccCccceeecCCCEEEEEEECCcCHHHHHHHHHH---HHHHHHhc-CCEEEEEEeCC------CC--HH
Confidence            345555554433        4679999999999999999996543   34555556 67999998887      32  46


Q ss_pred             HHhhcCCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHHcCCc
Q 036413          204 VCGYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMESGPR  252 (346)
Q Consensus       204 ~~~~y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~~~~~  252 (346)
                      ++..|++..+|++.++++ .|+.+ .+.|..+.++|.+.|.+.+.....
T Consensus        84 l~~~~~v~~~Pt~~~~~~-~G~~~-~~~G~~~~~~l~~~l~~~~~~~~~  130 (136)
T 2l5l_A           84 LAGAFGIRSIPSILFIPM-EGKPE-MAQGAMPKASFKKAIDEFLLKKEG  130 (136)
T ss_dssp             HHHHTTCCSSCEEEEECS-SSCCE-EEESCCCHHHHHHHHHHHHTSCTT
T ss_pred             HHHHcCCCCCCEEEEECC-CCcEE-EEeCCCCHHHHHHHHHHHhhccCC
Confidence            889999999999999986 68876 678988999888888887765543

>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor}

Probab=98.40  E-value=7.6e-07  Score=70.23  Aligned_cols=94  Identities=17%  Similarity=0.208  Sum_probs=74.1

Q ss_pred             HhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCCCCceEEEEe
Q 036413          141 VGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVLVID  220 (346)
Q Consensus       141 ~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~i~iid  220 (346)
                      ...+.+|.++|++.++||..|+.+...+   ..+.+-+. .++.|..++.+      ..  ..++..|++..+|++.++.
T Consensus        18 ~~~~~~~~~vv~f~~~~C~~C~~~~~~l---~~~~~~~~-~~~~~~~v~~~------~~--~~~~~~~~v~~~Pt~~~~~   85 (112)
T 1t00_A           18 DVLKNDKPVLVDFWAAWCGPCRQIAPSL---EAIAAEYG-DKIEIVKLNID------EN--PGTAAKYGVMSIPTLNVYQ   85 (112)
T ss_dssp             HTTTCSSCEEEEEECTTCHHHHHHHHHH---HHHHHHTT-TTCEEEEEETT------TC--HHHHHHTTCCSSSEEEEEE
T ss_pred             HHhhCCCeEEEEEECCCCHhHHhcCHHH---HHHHHHhc-CCeEEEEEEcC------CC--HHHHHhCCCCcccEEEEEe
Confidence            3345689999999999999999986433   34444455 67999998887      32  4688999999999988873


Q ss_pred             CCCCceEEEEeCCCChHHHHHHHHHHHH
Q 036413          221 PITGEKMRKWCGMVDPVSLLEDLLSFME  248 (346)
Q Consensus       221 p~tge~l~~~~G~~~~~~~i~~L~~fl~  248 (346)
                        .|+.+..+.|..+.+++.+.|.+.+.
T Consensus        86 --~G~~~~~~~G~~~~~~l~~~l~~~l~  111 (112)
T 1t00_A           86 --GGEVAKTIVGAKPKAAIVRDLEDFIA  111 (112)
T ss_dssp             --TTEEEEEEESCCCHHHHHHHTHHHHC
T ss_pred             --CCEEEEEEeCCCCHHHHHHHHHHHhh
Confidence              69998889999898888888877663

>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei}

Probab=98.39  E-value=8.5e-07  Score=73.68  Aligned_cols=104  Identities=14%  Similarity=0.118  Sum_probs=84.1

Q ss_pred             cCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCCC
Q 036413          133 GSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDS  212 (346)
Q Consensus       133 gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~  212 (346)
                      -+-++......+.+|++||++.++||..|+.+...+   +.+.+-+. .++.|..++.+      ..  ..++..|++..
T Consensus        11 l~~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~~~l---~~l~~~~~-~~v~~~~vd~~------~~--~~l~~~~~v~~   78 (140)
T 3hz4_A           11 FEDMTWSQQVEDSKKPVVVMFYSPACPYCKAMEPYF---EEYAKEYG-SSAVFGRINIA------TN--PWTAEKYGVQG   78 (140)
T ss_dssp             ECHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHH---HHHHHHHT-TTSEEEEEETT------TC--HHHHHHHTCCE
T ss_pred             cchHhHHHHHHhCCCcEEEEEECCCChhHHHHHHHH---HHHHHHhC-CceEEEEEECC------cC--HhHHHHCCCCc
Confidence            344444556667799999999999999999996544   56666666 77999998887      32  56889999999


Q ss_pred             CceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHHcC
Q 036413          213 LPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMESG  250 (346)
Q Consensus       213 ~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~~~  250 (346)
                      +|+++++.  .|+.+....|..+++.|.+.|.+.+...
T Consensus        79 ~Pt~~~~~--~G~~~~~~~G~~~~~~l~~~l~~~l~~~  114 (140)
T 3hz4_A           79 TPTFKFFC--HGRPVWEQVGQIYPSILKNAVRDMLQHG  114 (140)
T ss_dssp             ESEEEEEE--TTEEEEEEESSCCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEe--CCcEEEEEcCCCCHHHHHHHHHHHhccc
Confidence            99999984  6999989999999999999999888653

>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...

Probab=98.38  E-value=1e-06  Score=68.41  Aligned_cols=96  Identities=21%  Similarity=0.353  Sum_probs=72.9

Q ss_pred             cCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCCC
Q 036413          133 GSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDS  212 (346)
Q Consensus       133 gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~  212 (346)
                      .+|++++..+  .+|.++|++.++||..|+.+...+   +.+.+-..  ++.|..++.+      .  ...++..|++..
T Consensus         9 ~~~~~~l~~~--~~~~~~v~f~~~~C~~C~~~~~~~---~~~~~~~~--~~~~~~vd~~------~--~~~~~~~~~v~~   73 (105)
T 3m9j_A            9 TAFQEALDAA--GDKLVVVDFSATWCGPCKMIKPFF---HSLSEKYS--NVIFLEVDVD------D--CQDVASESEVKS   73 (105)
T ss_dssp             HHHHHHHHHT--TTSCEEEEEECTTCHHHHHHHHHH---HHHHHHST--TSEEEEEETT------T--CHHHHHHTTCCB
T ss_pred             HHHHHHHHhc--CCCeEEEEEECCCChhhHHHHHHH---HHHHHHcc--CeEEEEEEhh------h--hHHHHHHcCCCc
Confidence            4566666544  689999999999999999996433   22333333  4888888777      2  356889999999


Q ss_pred             CceEEEEeCCCCceEEEEeCCCChHHHHHHHHHH
Q 036413          213 LPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSF  246 (346)
Q Consensus       213 ~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~f  246 (346)
                      +|++.++.  .|+.+..+.|. +++++.+.|.+.
T Consensus        74 ~Pt~~~~~--~g~~~~~~~g~-~~~~l~~~l~~~  104 (105)
T 3m9j_A           74 MPTFQFFK--KGQKVGEFSGA-NKEKLEATINEL  104 (105)
T ss_dssp             SSEEEEEE--TTEEEEEEESS-CHHHHHHHHHHH
T ss_pred             CcEEEEEE--CCeEEEEEeCC-CHHHHHHHHHHh
Confidence            99999994  59999999998 888777776654

>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C

Probab=98.37  E-value=9.1e-07  Score=68.53  Aligned_cols=97  Identities=14%  Similarity=0.297  Sum_probs=75.4

Q ss_pred             cCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCCC
Q 036413          133 GSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDS  212 (346)
Q Consensus       133 gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~  212 (346)
                      .+|+++.   .+.+|.++|++.++||..|+.+...+   ..+.+-++ .++.|..++.+      .  ...++..|++..
T Consensus         8 ~~~~~~~---~~~~~~~~v~f~~~~C~~C~~~~~~~---~~~~~~~~-~~~~~~~v~~~------~--~~~~~~~~~v~~   72 (105)
T 1fb6_A            8 SSWKEFV---LESEVPVMVDFWAPWCGPCKLIAPVI---DELAKEYS-GKIAVYKLNTD------E--APGIATQYNIRS   72 (105)
T ss_dssp             TTHHHHT---TTCSSCEEEEEECTTCHHHHHHHHHH---HHHHHHTT-TTCEEEEEETT------T--CHHHHHHTTCCS
T ss_pred             hhHHHHH---hcCCCcEEEEEECCCChHHHHHHHHH---HHHHHHhc-CceEEEEEcCc------c--hHHHHHhCCCCc
Confidence            3455543   34589999999999999999997554   45555566 67999888877      3  246889999999


Q ss_pred             CceEEEEeCCCCceEEEEeCCCChHHHHHHHHHH
Q 036413          213 LPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSF  246 (346)
Q Consensus       213 ~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~f  246 (346)
                      +|++.++.  .|+.+..+.|..+.+.+.+.|.+.
T Consensus        73 ~Pt~~~~~--~g~~~~~~~G~~~~~~l~~~l~~~  104 (105)
T 1fb6_A           73 IPTVLFFK--NGERKESIIGAVPKSTLTDSIEKY  104 (105)
T ss_dssp             SSEEEEEE--TTEEEEEEEECCCHHHHHHHHHHH
T ss_pred             ccEEEEEe--CCeEEEEEecCCCHHHHHHHHHhh
Confidence            99988773  699888899988888887777654

>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum}

Probab=98.37  E-value=6.5e-07  Score=73.04  Aligned_cols=114  Identities=8%  Similarity=0.108  Sum_probs=77.6

Q ss_pred             hhHHHHhhcCCCcccccccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCC
Q 036413          115 NNNNLASLYRPPVDLMFNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDD  194 (346)
Q Consensus       115 ~~~~l~~lf~PP~~l~~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~  194 (346)
                      +...+.++|.+--.+  ...-.+....+..++|.+||++.++||..|+.+...+   +.+.+-++ .++.|..++.+   
T Consensus        13 f~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l---~~~~~~~~-~~v~~~~vd~d---   83 (128)
T 3ul3_B           13 FDKYYLRMFKKVPRL--QQNGSNIINGVNMKNTVIVLYFFAKWCQACTMQSTEM---DKLQKYYG-KRIYLLKVDLD---   83 (128)
T ss_dssp             -------------CC--CCCCCSSSSBTTSCCSEEEEEEECTTCHHHHHHHHHH---HHHHHHHG-GGEEEEEEEGG---
T ss_pred             HHHHHHHHhccCCcc--ccCCccHHHHHHccCCEEEEEEECCCCHHHHHHhHHH---HHHHHHhc-CCeEEEEEECC---
Confidence            334455566442221  1222233566678899999999999999999996554   45556666 78999999887   


Q ss_pred             CCCChHHHHHHhhcCCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHH
Q 036413          195 DDDDSECRKVCGYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLL  244 (346)
Q Consensus       195 ~~~~~eg~~~~~~y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~  244 (346)
                         ..  ..++..|++..+|++.++.  .|+.+....|..+.+++.+.|.
T Consensus        84 ---~~--~~l~~~~~v~~~Pt~~~~~--~G~~~~~~~G~~~~~~l~~~l~  126 (128)
T 3ul3_B           84 ---KN--ESLARKFSVKSLPTIILLK--NKTMLARKDHFVSSNDLIALIK  126 (128)
T ss_dssp             ---GC--HHHHHHTTCCSSSEEEEEE--TTEEEEEESSCCCHHHHHHHHT
T ss_pred             ---CC--HHHHHHcCCCCcCEEEEEE--CCEEEEEecCCCCHHHHHHHHH
Confidence               32  4789999999999999994  6999999999989877766554

>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}

Probab=98.35  E-value=1.1e-06  Score=72.23  Aligned_cols=99  Identities=14%  Similarity=0.172  Sum_probs=77.9

Q ss_pred             ccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCC
Q 036413          132 NGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLD  211 (346)
Q Consensus       132 ~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~  211 (346)
                      ..+|++..   .+.+|.+||++.++||..|+.+...+   +.+.+.+. .++.|..++.+.      .  ..++..|++.
T Consensus        29 ~~~f~~~~---~~~~k~vlv~F~a~wC~~C~~~~p~l---~~l~~~~~-~~v~~~~vd~~~------~--~~l~~~~~v~   93 (128)
T 2o8v_B           29 DDSFDTDV---LKADGAILVDFWAEWCGPAKMIAPIL---DEIADEYQ-GKLTVAKLNIDQ------N--PGTAPKYGIR   93 (128)
T ss_dssp             TTTHHHHT---TTCSSEEEEEEECSSCHHHHHTHHHH---HHHHHHTT-TTEEEEEEETTT------C--CTTSGGGTCC
T ss_pred             hhhHHHHH---HhcCCEEEEEEECCCCHHHHHHhHHH---HHHHHHhc-CCeEEEEEECCC------C--HHHHHHcCCC
Confidence            44565443   56789999999999999999996543   34555556 689999998882      2  3578899999


Q ss_pred             CCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHH
Q 036413          212 SLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFM  247 (346)
Q Consensus       212 ~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl  247 (346)
                      .+|++.++  ..|+.+..+.|..+.++|.+.|.+.+
T Consensus        94 ~~Pt~~~~--~~G~~~~~~~G~~~~~~l~~~l~~~l  127 (128)
T 2o8v_B           94 GIPTLLLF--KNGEVAATKVGALSKGQLKEFLDANL  127 (128)
T ss_dssp             SSSEEEEE--ETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred             ccCEEEEE--eCCEEEEEEcCCCCHHHHHHHHHHhh
Confidence            99999999  37998888999989888888877655

>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B

Probab=98.34  E-value=2e-06  Score=68.23  Aligned_cols=91  Identities=15%  Similarity=0.269  Sum_probs=67.6

Q ss_pred             HHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCCCCceEEE
Q 036413          139 KDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVLV  218 (346)
Q Consensus       139 ~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~i~i  218 (346)
                      ++.+.+++|++||++.++||..|+.+...+   +.+.+-..  ++.|..++.+      .  ...++..|++..+|++.+
T Consensus        17 f~~~~~~~k~vlv~f~a~wC~~C~~~~p~l---~~l~~~~~--~~~~~~vd~~------~--~~~l~~~~~v~~~Pt~~~   83 (109)
T 3f3q_A           17 FDSAIAQDKLVVVDFYATWCGPCKMIAPMI---EKFSEQYP--QADFYKLDVD------E--LGDVAQKNEVSAMPTLLL   83 (109)
T ss_dssp             HHHHTTSSSCEEEEEECTTCHHHHHHHHHH---HHHHHHCT--TSEEEEEETT------T--CHHHHHHTTCCSSSEEEE
T ss_pred             HHHHHhcCCEEEEEEECCcCHhHHHHHHHH---HHHHHHCC--CCEEEEEECC------C--CHHHHHHcCCCccCEEEE
Confidence            344556699999999999999999996433   22222223  4777777776      2  246889999999999999


Q ss_pred             EeCCCCceEEEEeCCCChHHHHHHHHH
Q 036413          219 IDPITGEKMRKWCGMVDPVSLLEDLLS  245 (346)
Q Consensus       219 idp~tge~l~~~~G~~~~~~~i~~L~~  245 (346)
                      ++  .|+.+..+.|. +++++.+.|.+
T Consensus        84 ~~--~G~~~~~~~G~-~~~~l~~~i~~  107 (109)
T 3f3q_A           84 FK--NGKEVAKVVGA-NPAAIKQAIAA  107 (109)
T ss_dssp             EE--TTEEEEEEESS-CHHHHHHHHHH
T ss_pred             EE--CCEEEEEEeCC-CHHHHHHHHHh
Confidence            98  69999999997 66666665554

>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A

Probab=98.33  E-value=2.2e-06  Score=66.50  Aligned_cols=96  Identities=13%  Similarity=0.252  Sum_probs=72.6

Q ss_pred             cCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCCC
Q 036413          133 GSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDS  212 (346)
Q Consensus       133 gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~  212 (346)
                      .+|++++..  .++|+++|++.++||..|+.+...+   ..+.+-.+ .++.|..++.+      ..  ..++..|++..
T Consensus         9 ~~~~~~l~~--~~~~~~vv~f~~~~C~~C~~~~~~l---~~~~~~~~-~~~~~~~v~~~------~~--~~~~~~~~v~~   74 (106)
T 1xwb_A            9 ADLDGQLTK--ASGKLVVLDFFATWCGPCKMISPKL---VELSTQFA-DNVVVLKVDVD------EC--EDIAMEYNISS   74 (106)
T ss_dssp             HHHHHHHHH--HTTSEEEEEEECTTCHHHHHHHHHH---HHHHHHTT-TTEEEEEEETT------TC--HHHHHHTTCCS
T ss_pred             HHHHHHHHh--cCCCEEEEEEECCcCHHHHHhhHHH---HHHHHHhC-CCeEEEEEecc------ch--HHHHHHcCCCc
Confidence            356666643  4789999999999999999996543   34455555 68999999887      32  46889999999


Q ss_pred             CceEEEEeCCCCceEEEEeCCCChHHHHHHHHH
Q 036413          213 LPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLS  245 (346)
Q Consensus       213 ~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~  245 (346)
                      +|++.++.  .|+.+..+.| .+++.+.+.|.+
T Consensus        75 ~Pt~~~~~--~G~~~~~~~g-~~~~~l~~~i~~  104 (106)
T 1xwb_A           75 MPTFVFLK--NGVKVEEFAG-ANAKRLEDVIKA  104 (106)
T ss_dssp             SSEEEEEE--TTEEEEEEES-CCHHHHHHHHHH
T ss_pred             ccEEEEEc--CCcEEEEEcC-CCHHHHHHHHHH
Confidence            99987774  6998888999 677766555543

>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}

Probab=98.32  E-value=5.2e-07  Score=70.86  Aligned_cols=89  Identities=13%  Similarity=0.203  Sum_probs=64.1

Q ss_pred             hhcCcEEEEEecCCCCccccccccccCCCHHHHHHhcc-CcEEEEEeecCCCCCCCChHHHHHHhhcCCCCCceEEEEeC
Q 036413          143 SDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRA-SNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVLVIDP  221 (346)
Q Consensus       143 k~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~-~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~i~iidp  221 (346)
                      .+++|.++|++.++||..|+.+.      +.+.++.++ .++.|..++.+.      .  ..++..|++..+|++.++. 
T Consensus        15 ~~~~~~vlv~f~a~wC~~C~~~~------p~~~~~~~~~~~~~~~~vd~~~------~--~~l~~~~~v~~~Pt~~~~~-   79 (105)
T 4euy_A           15 IEEQQLVLLFIKTENCGVCDVML------RKVNYVLENYNYVEKIEILLQD------M--QEIAGRYAVFTGPTVLLFY-   79 (105)
T ss_dssp             TTCSSEEEEEEEESSCHHHHHHH------HHHHHHHHTCTTEEEEEEEECC------C-----------CCCCEEEEEE-
T ss_pred             HhcCCCEEEEEeCCCCcchHHHH------HHHHHHHHHcCCceEEEEECCC------C--HHHHHhcCCCCCCEEEEEe-
Confidence            36789999999999999999984      455555551 268999988882      2  3688899999999999996 


Q ss_pred             CCCceEEEEeCCCChHHHHHHHHHHH
Q 036413          222 ITGEKMRKWCGMVDPVSLLEDLLSFM  247 (346)
Q Consensus       222 ~tge~l~~~~G~~~~~~~i~~L~~fl  247 (346)
                       .|+.+....|..+.++|.+.|.+++
T Consensus        80 -~G~~~~~~~g~~~~~~l~~~l~~~~  104 (105)
T 4euy_A           80 -NGKEILRESRFISLENLERTIQLFE  104 (105)
T ss_dssp             -TTEEEEEEESSCCHHHHHHHHHTTC
T ss_pred             -CCeEEEEEeCCcCHHHHHHHHHHhh
Confidence             6999989999999888887776543

>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1

Probab=98.31  E-value=1.8e-06  Score=70.76  Aligned_cols=96  Identities=15%  Similarity=0.229  Sum_probs=74.2

Q ss_pred             cCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhcc-CcEEEEEeecCCCCCCCChHHHHHHhhcCCC
Q 036413          133 GSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRA-SNFIFWQVYDDDDDDDDDSECRKVCGYYKLD  211 (346)
Q Consensus       133 gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~-~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~  211 (346)
                      .+|++++    ..+|++||++.++||..|+.+...      +.++.++ .++.|..++.+      ..  ..++..|++.
T Consensus        28 ~~f~~~~----~~~k~vvv~F~a~wC~~C~~~~p~------l~~l~~~~~~v~~~~vd~d------~~--~~l~~~~~v~   89 (125)
T 1r26_A           28 EQFRNIM----SEDILTVAWFTAVWCGPCKTIERP------MEKIAYEFPTVKFAKVDAD------NN--SEIVSKCRVL   89 (125)
T ss_dssp             HHHHHHH----HSSSCEEEEEECTTCHHHHHTHHH------HHHHHHHCTTSEEEEEETT------TC--HHHHHHTTCC
T ss_pred             HHHHHHH----ccCCEEEEEEECCcCHhHHHHHHH------HHHHHHHCCCCEEEEEECC------CC--HHHHHHcCCC
Confidence            4566665    688999999999999999999543      3444330 26899999887      32  4688999999


Q ss_pred             CCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHHc
Q 036413          212 SLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMES  249 (346)
Q Consensus       212 ~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~~  249 (346)
                      .+|++.|+  ..|+.+..+.| .++++|.+.|.+.+..
T Consensus        90 ~~Pt~~i~--~~G~~~~~~~G-~~~~~l~~~l~~~l~~  124 (125)
T 1r26_A           90 QLPTFIIA--RSGKMLGHVIG-ANPGMLRQKLRDIIKD  124 (125)
T ss_dssp             SSSEEEEE--ETTEEEEEEES-SCHHHHHHHHHHHHHC
T ss_pred             cccEEEEE--eCCeEEEEEeC-CCHHHHHHHHHHHhcC
Confidence            99998877  36998888999 6888888888777653

>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.30  E-value=2.8e-06  Score=68.84  Aligned_cols=103  Identities=15%  Similarity=0.235  Sum_probs=78.1

Q ss_pred             ccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhcc---CcEEEEEeecCCCCCCCChHHHHHHhhc
Q 036413          132 NGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRA---SNFIFWQVYDDDDDDDDDSECRKVCGYY  208 (346)
Q Consensus       132 ~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~---~nFVfw~~~~~~~~~~~~~eg~~~~~~y  208 (346)
                      ..+|+++.   .+.+|.+||++.++||..|+.+...+   ..+.+-+++   .++.|..++.+      .  ...++..|
T Consensus        14 ~~~~~~~~---~~~~~~~lv~f~a~wC~~C~~~~~~~---~~~~~~~~~~~~~~~~~~~vd~~------~--~~~l~~~~   79 (133)
T 1x5d_A           14 DDSFDKNV---LDSEDVWMVEFYAPWCGHCKNLEPEW---AAAASEVKEQTKGKVKLAAVDAT------V--NQVLASRY   79 (133)
T ss_dssp             TTHHHHHT---TTSSSEEEEEEECTTCHHHHTHHHHH---HHHHHHHHHHTTTSEEEEEEETT------T--CCHHHHHH
T ss_pred             HhhHHHHH---hcCCCeEEEEEECCCCHHHHhhcHHH---HHHHHHHHhhcCCcEEEEEEECC------C--CHHHHHhC
Confidence            34455433   45689999999999999999986443   233332220   47899888877      2  24688899


Q ss_pred             CCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHHcC
Q 036413          209 KLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMESG  250 (346)
Q Consensus       209 ~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~~~  250 (346)
                      ++..+|++.++++  |+.+..+.|..+.++|.+.|.+.+...
T Consensus        80 ~v~~~Pt~~~~~~--g~~~~~~~G~~~~~~l~~~l~~~~~~~  119 (133)
T 1x5d_A           80 GIRGFPTIKIFQK--GESPVDYDGGRTRSDIVSRALDLFSDN  119 (133)
T ss_dssp             TCCSSSEEEEEET--TEEEEEECSCCSHHHHHHHHHHHHHHH
T ss_pred             CCCeeCeEEEEeC--CCceEEecCCCCHHHHHHHHHHHhhcc
Confidence            9999999999996  888888899889999999998888653

>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A

Probab=98.29  E-value=4.4e-07  Score=78.04  Aligned_cols=118  Identities=14%  Similarity=0.215  Sum_probs=84.5

Q ss_pred             HHHhhcCCCcccccccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHh--ccCcEEEEEeecCCCCC
Q 036413          118 NLASLYRPPVDLMFNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTI--RASNFIFWQVYDDDDDD  195 (346)
Q Consensus       118 ~l~~lf~PP~~l~~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i--~~~nFVfw~~~~~~~~~  195 (346)
                      .+...|++....   -+|++++..+..++|++||++..+||..|+.+... |..  +.++.  + -+|+..-++..    
T Consensus        21 ~~~~~~~~~i~w---~~~~~~~~~~~~~~k~vlv~F~a~WC~~C~~~~p~-l~~--~~~~~~~~-~~~~~v~~d~~----   89 (164)
T 1sen_A           21 GLGKGFGDHIHW---RTLEDGKKEAAASGLPLMVIIHKSWCGACKALKPK-FAE--STEISELS-HNFVMVNLEDE----   89 (164)
T ss_dssp             -CCTTSCTTSCB---CCHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHH-HHT--CHHHHHHH-TTSEEEEEEGG----
T ss_pred             cccccccccccc---cCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHHHH-HHH--HHHHhhcC-CeEEEEEecCC----
Confidence            334455565543   68999999999999999999999999999999763 333  22222  3 45665554433    


Q ss_pred             CCChHHHHHHhhcCC--CCCceEEEEeCCCCceEEEEeCC----------CChHHHHHHHHHHHHcCCc
Q 036413          196 DDDSECRKVCGYYKL--DSLPVVLVIDPITGEKMRKWCGM----------VDPVSLLEDLLSFMESGPR  252 (346)
Q Consensus       196 ~~~~eg~~~~~~y~~--~~~P~i~iidp~tge~l~~~~G~----------~~~~~~i~~L~~fl~~~~~  252 (346)
                        ..   .++..|.+  ..+|++.++|+ .|+.+..+.|.          .++++|++.|.+.++....
T Consensus        90 --~~---~~~~~~~~~~~~~Pt~~~~d~-~G~~~~~~~G~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~  152 (164)
T 1sen_A           90 --EE---PKDEDFSPDGGYIPRILFLDP-SGKVHPEIINENGNPSYKYFYVSAEQVVQGMKEAQERLTG  152 (164)
T ss_dssp             --GS---CSCGGGCTTCSCSSEEEEECT-TSCBCTTCCCTTSCTTSTTCCCSHHHHHHHHHHHHHHHGG
T ss_pred             --ch---HHHHHhcccCCcCCeEEEECC-CCCEEEEEeCCCCccchhcccCCHHHHHHHHHHHHHhccH
Confidence              11   14566777  56999999996 68888777774          7889999999998876543

>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A

Probab=98.29  E-value=2.2e-06  Score=68.38  Aligned_cols=92  Identities=14%  Similarity=0.193  Sum_probs=71.8

Q ss_pred             HHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCCCCceEEE
Q 036413          139 KDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVLV  218 (346)
Q Consensus       139 ~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~i~i  218 (346)
                      ...+.+.+|.+||+++++||..|+.+...+   +.+.+-.. .++.|..++.+      .  ...++..|++..+|++.+
T Consensus        23 ~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~---~~~~~~~~-~~~~~~~v~~~------~--~~~~~~~~~i~~~Pt~~~   90 (121)
T 2i1u_A           23 ATDVLSSNKPVLVDFWATWCGPCKMVAPVL---EEIATERA-TDLTVAKLDVD------T--NPETARNFQVVSIPTLIL   90 (121)
T ss_dssp             HHHTTTCSSCEEEEEECTTCHHHHHHHHHH---HHHHHHTT-TTCEEEEEETT------T--CHHHHHHTTCCSSSEEEE
T ss_pred             HHHHHhCCCcEEEEEECCCCHHHHHHHHHH---HHHHHHhc-CCeEEEEEECC------C--CHHHHHhcCCCcCCEEEE
Confidence            344456789999999999999999996544   45555555 67999998887      3  246889999999999988


Q ss_pred             EeCCCCceEEEEeCCCChHHHHHHHH
Q 036413          219 IDPITGEKMRKWCGMVDPVSLLEDLL  244 (346)
Q Consensus       219 idp~tge~l~~~~G~~~~~~~i~~L~  244 (346)
                      +.  .|+.+....|..+.++|.+.|.
T Consensus        91 ~~--~g~~~~~~~G~~~~~~l~~~l~  114 (121)
T 2i1u_A           91 FK--DGQPVKRIVGAKGKAALLRELS  114 (121)
T ss_dssp             EE--TTEEEEEEESCCCHHHHHHHTC
T ss_pred             EE--CCEEEEEecCCCCHHHHHHHHH
Confidence            85  6998888999888776655543

>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=98.28  E-value=3.4e-06  Score=69.19  Aligned_cols=101  Identities=9%  Similarity=0.239  Sum_probs=77.5

Q ss_pred             cccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccC---cEEEEEeecCCCCCCCChHHHHHHhh
Q 036413          131 FNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRAS---NFIFWQVYDDDDDDDDDSECRKVCGY  207 (346)
Q Consensus       131 ~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~---nFVfw~~~~~~~~~~~~~eg~~~~~~  207 (346)
                      -..+|++++    +.+|.+||++.++||..|+.+...+   ..+.+.++ .   +++|..++.+      .  ...++..
T Consensus        23 ~~~~~~~~~----~~~~~vlv~f~a~wC~~C~~~~p~~---~~~~~~~~-~~~~~v~~~~vd~~------~--~~~~~~~   86 (140)
T 2dj1_A           23 NDGNFDNFV----ADKDTVLLEFYAPWCGHCKQFAPEY---EKIASTLK-DNDPPIAVAKIDAT------S--ASMLASK   86 (140)
T ss_dssp             CTTTHHHHH----TTCSEEEEEECCTTCHHHHTTHHHH---HHHHHHHH-SSSSCCEEEEECTT------T--CHHHHHH
T ss_pred             ChHhHHHHH----hcCCeEEEEEECCCCHHHHHhhHHH---HHHHHHHh-ccCCceEEEEEeCc------c--cHHHHHH
Confidence            456677765    3589999999999999999986443   23444444 3   3889888777      2  2568899


Q ss_pred             cCCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHHcC
Q 036413          208 YKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMESG  250 (346)
Q Consensus       208 y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~~~  250 (346)
                      |++..+|++.|+.  .|+ +..+.|..+.+.|.+.|.+.+...
T Consensus        87 ~~v~~~Pt~~~~~--~G~-~~~~~g~~~~~~l~~~l~~~~~~~  126 (140)
T 2dj1_A           87 FDVSGYPTIKILK--KGQ-AVDYDGSRTQEEIVAKVREVSQPD  126 (140)
T ss_dssp             TTCCSSSEEEEEE--TTE-EEECCSCCCHHHHHHHHHHHHSSS
T ss_pred             CCCCccCeEEEEE--CCc-EEEcCCCCCHHHHHHHHHHhcCCC
Confidence            9999999999994  588 777889899998888888877543

>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A

Probab=98.28  E-value=5.3e-06  Score=64.77  Aligned_cols=95  Identities=19%  Similarity=0.260  Sum_probs=75.1

Q ss_pred             ccccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhcc-----CcEEEEEeecCCCCCCCChHHHHH
Q 036413          130 MFNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRA-----SNFIFWQVYDDDDDDDDDSECRKV  204 (346)
Q Consensus       130 ~~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~-----~nFVfw~~~~~~~~~~~~~eg~~~  204 (346)
                      +-..+|++++.     +|.+||++.++||..|+.+.      +.+.++.++     .++.|..++.+      .  ...+
T Consensus        10 l~~~~~~~~~~-----~~~~lv~f~~~~C~~C~~~~------~~~~~~~~~~~~~~~~~~~~~vd~~------~--~~~l   70 (111)
T 3uvt_A           10 LTENNFDDTIA-----EGITFIKFYAPWCGHCKTLA------PTWEELSKKEFPGLAGVKIAEVDCT------A--ERNI   70 (111)
T ss_dssp             CCTTTHHHHHH-----SSEEEEEEECSSCHHHHHHH------HHHHHHHTCCCCC-CCEEEEEEETT------T--CHHH
T ss_pred             cChhhHHHHhc-----CCcEEEEEECCCChhHHHhh------HHHHHHHHHhhccCCceEEEEEecc------c--cHhH
Confidence            34667888876     78999999999999999884      566666651     26888888877      3  2468


Q ss_pred             HhhcCCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHH
Q 036413          205 CGYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLS  245 (346)
Q Consensus       205 ~~~y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~  245 (346)
                      +..|++..+|++.++.  .|+.+..+.|..+.++|.+.|.+
T Consensus        71 ~~~~~v~~~Pt~~~~~--~g~~~~~~~g~~~~~~l~~~l~~  109 (111)
T 3uvt_A           71 CSKYSVRGYPTLLLFR--GGKKVSEHSGGRDLDSLHRFVLS  109 (111)
T ss_dssp             HHHTTCCSSSEEEEEE--TTEEEEEECSCCSHHHHHHHHHH
T ss_pred             HHhcCCCcccEEEEEe--CCcEEEeccCCcCHHHHHHHHHh
Confidence            9999999999999884  68988899998888877776654

>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus}

Probab=98.27  E-value=1.7e-06  Score=69.36  Aligned_cols=104  Identities=10%  Similarity=0.064  Sum_probs=78.9

Q ss_pred             CHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCCCC
Q 036413          134 SFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSL  213 (346)
Q Consensus       134 sf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~  213 (346)
                      +-++......+.+|.+||++.++||..|+.+...+   ..+.+.+. .++.|..++.+      ..  ..++..|++..+
T Consensus         9 ~~~~f~~~~~~~~~~~lv~f~a~~C~~C~~~~~~~---~~~~~~~~-~~~~~~~vd~~------~~--~~~~~~~~v~~~   76 (122)
T 3aps_A            9 TPQTFNEKVLQGKTHWVVDFYAPWCGPCQNFAPEF---ELLARMIK-GKVRAGKVDCQ------AY--PQTCQKAGIKAY   76 (122)
T ss_dssp             CHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHH---HHHHHHHT-TTCEEEEEETT------TC--HHHHHHTTCCSS
T ss_pred             CHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHH---HHHHHHhc-CCeEEEEEeCc------CC--HHHHHHcCCCcc
Confidence            33444455667899999999999999999996543   44555566 68999999887      32  468899999999


Q ss_pred             ceEEEEeCCCCceEEEEeCC----CChHHHHHHHHHHHHcCC
Q 036413          214 PVVLVIDPITGEKMRKWCGM----VDPVSLLEDLLSFMESGP  251 (346)
Q Consensus       214 P~i~iidp~tge~l~~~~G~----~~~~~~i~~L~~fl~~~~  251 (346)
                      |++.++++ .|+ +..+.|.    .+++.+.+.|.+.+...+
T Consensus        77 Pt~~~~~~-~~~-~~~~~g~~~~~~~~~~l~~~l~~~l~~~~  116 (122)
T 3aps_A           77 PSVKLYQY-ERA-KKSIWEEQINSRDAKTIAALIYGKLETLQ  116 (122)
T ss_dssp             SEEEEEEE-EGG-GTEEEEEEECCSCHHHHHHHHHHHHHCC-
T ss_pred             ceEEEEeC-CCc-cceeeccccCcCCHHHHHHHHHHHHHhhh
Confidence            99999985 334 5555664    789999999988887643

>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A

Probab=98.27  E-value=3.2e-06  Score=69.14  Aligned_cols=102  Identities=14%  Similarity=0.076  Sum_probs=74.5

Q ss_pred             hhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCC-------------------hHHHH
Q 036413          143 SDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDD-------------------SECRK  203 (346)
Q Consensus       143 k~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~-------------------~eg~~  203 (346)
                      .-.+|++||++.++||..|+.+...+   ..+.+-+. +++.|..++.+....+.+                   .....
T Consensus        26 ~~~gk~~lv~f~~~~C~~C~~~~~~l---~~l~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  101 (148)
T 2b5x_A           26 LIGEKPTLIHFWSISCHLCKEAMPQV---NEFRDKYQ-DQLNVVAVHMPRSEDDLDPGKIKETAAEHDITQPIFVDSDHA  101 (148)
T ss_dssp             HTTTSCEEEEEECTTCHHHHHHHHHH---HHHHHHHT-TTSEEEEEECCCSTTTSSHHHHHHHHHHTTCCSCEEECSSCH
T ss_pred             hcCCCEEEEEEEcCCCHHHHHHhHHH---HHHHHHhc-CCcEEEEEEcCCCccccCHHHHHHHHHHcCCCcceEECCchh
Confidence            34679999999999999998875432   22333344 448888887662111000                   11346


Q ss_pred             HHhhcCCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHHc
Q 036413          204 VCGYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMES  249 (346)
Q Consensus       204 ~~~~y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~~  249 (346)
                      ++..|++..+|++.|||+ .|+.+..+.|..+++++.+.|.+.+..
T Consensus       102 ~~~~~~v~~~P~~~lid~-~G~i~~~~~g~~~~~~l~~~l~~~l~~  146 (148)
T 2b5x_A          102 LTDAFENEYVPAYYVFDK-TGQLRHFQAGGSGMKMLEKRVNRVLAE  146 (148)
T ss_dssp             HHHHTCCCCSSEEEEECT-TCBEEEEEESCSTTHHHHHHHHHHHTT
T ss_pred             HHHHhCCCCCCEEEEECC-CCcEEEEecCCCCHHHHHHHHHHHHhc
Confidence            788899999999999997 699999999988899999998888764

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=98.27  E-value=2.9e-06  Score=75.38  Aligned_cols=112  Identities=19%  Similarity=0.269  Sum_probs=85.8

Q ss_pred             hcCCCccc--ccccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCCh
Q 036413          122 LYRPPVDL--MFNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDS  199 (346)
Q Consensus       122 lf~PP~~l--~~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~  199 (346)
                      +|.+...+  +-..+|+.++    ..+|++||++.++||..|+.+...+   +.+.+-++ .++.|..++.+      ..
T Consensus        92 ~~~~~~~v~~l~~~~f~~~~----~~~~~vlv~F~a~wC~~C~~~~p~~---~~l~~~~~-~~v~~~~vd~~------~~  157 (210)
T 3apq_A           92 IYDDDPEIITLERREFDAAV----NSGELWFVNFYSPGCSHCHDLAPTW---REFAKEVD-GLLRIGAVNCG------DD  157 (210)
T ss_dssp             TTTTCTTSEECCHHHHHHHH----HHSCCEEEEEECTTCHHHHHHHHHH---HHHHHHTB-TTBEEEEEETT------TC
T ss_pred             ccCCCCceEEecHHHHHHHH----ccCCcEEEEEeCCCChhHHHHHHHH---HHHHHHhc-CceEEEEEECC------cc
Confidence            44444443  2234566655    6789999999999999999996533   45555566 78999999887      32


Q ss_pred             HHHHHHhhcCCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHHcCC
Q 036413          200 ECRKVCGYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMESGP  251 (346)
Q Consensus       200 eg~~~~~~y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~~~~  251 (346)
                        ..++..|++..+|++.++  ..|+.+....|..+.++|.+.|.+.+....
T Consensus       158 --~~l~~~~~v~~~Pt~~~~--~~G~~~~~~~G~~~~~~l~~~i~~~l~~~~  205 (210)
T 3apq_A          158 --RMLCRMKGVNSYPSLFIF--RSGMAAVKYNGDRSKESLVAFAMQHVRSTV  205 (210)
T ss_dssp             --HHHHHHTTCCSSSEEEEE--CTTSCCEECCSCCCHHHHHHHHHHHHHCCS
T ss_pred             --HHHHHHcCCCcCCeEEEE--ECCCceeEecCCCCHHHHHHHHHHhCcccc
Confidence              468899999999999999  468888889999999999999988886543

>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus}

Probab=98.26  E-value=5.4e-06  Score=68.59  Aligned_cols=100  Identities=9%  Similarity=0.117  Sum_probs=75.9

Q ss_pred             hhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChH---------------------H
Q 036413          143 SDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSE---------------------C  201 (346)
Q Consensus       143 k~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~e---------------------g  201 (346)
                      .-.+|++||++.++||..|+.+...+   ..+.+-+.+.++.+..++.+      ...                     .
T Consensus        27 ~~~gk~~lv~f~~~~C~~C~~~~~~l---~~l~~~~~~~~~~~v~v~~d------~~~~~~~~~~~~~~~~~~~~~~d~~   97 (152)
T 2lja_A           27 DLKGKYIYIDVWATWCGPCRGELPAL---KELEEKYAGKDIHFVSLSCD------KNKKAWENMVTKDQLKGIQLHMGTD   97 (152)
T ss_dssp             TTTTSEEEEEECCSSCCGGGGTHHHH---HHHHHHSTTSSEEEEEEECC------SCHHHHHHHHHHHTCCSEEEECSSC
T ss_pred             HcCCCEEEEEEECCcCHhHHHHhHHH---HHHHHHhccCCeEEEEEEcc------CcHHHHHHHHHhcCCCCceeecCcc
Confidence            34589999999999999998775332   12223233247989988887      322                     1


Q ss_pred             HHHHhhcCCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHHcCCc
Q 036413          202 RKVCGYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMESGPR  252 (346)
Q Consensus       202 ~~~~~~y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~~~~~  252 (346)
                      ..++..|++..+|++.|||+ .|+.+....|..+++++.+.|...+.....
T Consensus        98 ~~~~~~~~v~~~P~~~lid~-~G~i~~~~~g~~~~~~l~~~l~~~~~~~~~  147 (152)
T 2lja_A           98 RTFMDAYLINGIPRFILLDR-DGKIISANMTRPSDPKTAEKFNELLGLEGH  147 (152)
T ss_dssp             THHHHHTTCCSSCCEEEECT-TSCEEESSCCCTTCHHHHHHHHHHHTCCSS
T ss_pred             hhHHHHcCcCCCCEEEEECC-CCeEEEccCCCCCHHHHHHHHHHHhccccc
Confidence            26778899999999999997 599988888988889999999888876653

>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus}

Probab=98.26  E-value=3.5e-06  Score=69.57  Aligned_cols=99  Identities=17%  Similarity=0.272  Sum_probs=72.9

Q ss_pred             ccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCC
Q 036413          132 NGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLD  211 (346)
Q Consensus       132 ~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~  211 (346)
                      ..+|.+++.   +.++ ++|++.++||..|+.+...+   +.+.+-+. .++.|+.++.+      ..  ..++..|++.
T Consensus        40 ~~~~~~~~~---~~~~-vvv~f~~~~C~~C~~~~~~l---~~l~~~~~-~~v~~~~vd~~------~~--~~l~~~~~v~  103 (140)
T 1v98_A           40 EKGFAQEVA---GAPL-TLVDFFAPWCGPCRLVSPIL---EELARDHA-GRLKVVKVNVD------EH--PGLAARYGVR  103 (140)
T ss_dssp             ------------CCCE-EEEEEECTTCHHHHHHHHHH---HHHHHHTT-TTEEEEEEETT------TC--HHHHHHTTCC
T ss_pred             HHHHHHHHH---cCCC-EEEEEECCCCHHHHHHHHHH---HHHHHHcc-CceEEEEEECC------CC--HHHHHHCCCC
Confidence            445555544   3456 99999999999999996544   34555555 68999999888      32  4688999999


Q ss_pred             CCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHH
Q 036413          212 SLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFME  248 (346)
Q Consensus       212 ~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~  248 (346)
                      .+|++.++.  .|+.+..+.|..+.++|.+.|.+.++
T Consensus       104 ~~Pt~~~~~--~G~~~~~~~G~~~~~~l~~~i~~~l~  138 (140)
T 1v98_A          104 SVPTLVLFR--RGAPVATWVGASPRRVLEERLRPYLE  138 (140)
T ss_dssp             SSSEEEEEE--TTEEEEEEESCCCHHHHHHHHHHHHT
T ss_pred             ccCEEEEEe--CCcEEEEEeCCCCHHHHHHHHHHHHc
Confidence            999999994  69998889999898888888887775

>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1

Probab=98.25  E-value=2.3e-06  Score=67.91  Aligned_cols=96  Identities=17%  Similarity=0.215  Sum_probs=71.7

Q ss_pred             ccccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcC
Q 036413          130 MFNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYK  209 (346)
Q Consensus       130 ~~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~  209 (346)
                      .-..+|+++++    .+|.+||++.++||..|+.+...+   +.+.+-..  ++.|..++.+      .  ...++..|+
T Consensus        14 ~~~~~f~~~~~----~~k~vlv~f~a~~C~~C~~~~~~l---~~l~~~~~--~v~~~~vd~~------~--~~~~~~~~~   76 (112)
T 1syr_A           14 TSQAEFDSIIS----QNELVIVDFFAEWCGPCKRIAPFY---EECSKTYT--KMVFIKVDVD------E--VSEVTEKEN   76 (112)
T ss_dssp             CSHHHHHHHHH----HCSEEEEEEECTTCHHHHHHHHHH---HHHHHHCT--TSEEEEEETT------T--THHHHHHTT
T ss_pred             CCHHHHHHHHc----cCCeEEEEEECCCCHHHHHHHHHH---HHHHHHcC--CCEEEEEECC------C--CHHHHHHcC
Confidence            34556777773    789999999999999999996433   22333223  5888888877      3  246889999


Q ss_pred             CCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHH
Q 036413          210 LDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLS  245 (346)
Q Consensus       210 ~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~  245 (346)
                      +..+|++.++.  .|+.+..+.|. ++++|.+.|.+
T Consensus        77 v~~~Pt~~~~~--~G~~~~~~~G~-~~~~l~~~l~~  109 (112)
T 1syr_A           77 ITSMPTFKVYK--NGSSVDTLLGA-NDSALKQLIEK  109 (112)
T ss_dssp             CCSSSEEEEEE--TTEEEEEEESC-CHHHHHHHHHT
T ss_pred             CCcccEEEEEE--CCcEEEEEeCC-CHHHHHHHHHH
Confidence            99999987774  69998889998 87766665543

>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A

Probab=98.25  E-value=3.6e-06  Score=67.13  Aligned_cols=94  Identities=19%  Similarity=0.303  Sum_probs=73.5

Q ss_pred             cCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccC-cEEEEEeecCCCCCCCChHHHHHHhhcCCC
Q 036413          133 GSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRAS-NFIFWQVYDDDDDDDDDSECRKVCGYYKLD  211 (346)
Q Consensus       133 gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~-nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~  211 (346)
                      .+|++++..  ..+|+++|++.++||..|+.+.      +.+.++.+ + ++.|..++.+      .  ...++..|++.
T Consensus        22 ~~~~~~l~~--~~~~~~vv~f~a~wC~~C~~~~------~~~~~~~~-~~~~~~~~vd~~------~--~~~~~~~~~v~   84 (117)
T 2xc2_A           22 GDLESLLEQ--HKNKLVVVDFFATWCGPCKTIA------PLFKELSE-KYDAIFVKVDVD------K--LEETARKYNIS   84 (117)
T ss_dssp             THHHHHHHH--TTTSCEEEEEECTTCHHHHHHH------HHHHHHHT-TSSSEEEEEETT------T--SHHHHHHTTCC
T ss_pred             HHHHHHHHh--CCCCEEEEEEECCCCHhHHHHh------HHHHHHHH-HcCcEEEEEECC------c--cHHHHHHcCCC
Confidence            677777764  3689999999999999999995      45666666 5 6888888777      2  25688999999


Q ss_pred             CCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHH
Q 036413          212 SLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSF  246 (346)
Q Consensus       212 ~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~f  246 (346)
                      .+|++.++.  .|+.+..+.| .+++++.+.|.+.
T Consensus        85 ~~Pt~~~~~--~G~~~~~~~G-~~~~~l~~~l~~~  116 (117)
T 2xc2_A           85 AMPTFIAIK--NGEKVGDVVG-ASIAKVEDMIKKF  116 (117)
T ss_dssp             SSSEEEEEE--TTEEEEEEES-SCHHHHHHHHHHH
T ss_pred             ccceEEEEe--CCcEEEEEeC-CCHHHHHHHHHHh
Confidence            999988873  6999888999 5777766666543

>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1

Probab=98.24  E-value=4.5e-06  Score=65.39  Aligned_cols=97  Identities=13%  Similarity=0.215  Sum_probs=71.6

Q ss_pred             ccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhcc-CcEEEEEeecCCCCCCCChHHHHHHhhcCC
Q 036413          132 NGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRA-SNFIFWQVYDDDDDDDDDSECRKVCGYYKL  210 (346)
Q Consensus       132 ~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~-~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~  210 (346)
                      ..+|++++..  ..+|.++|++.++||..|+.+..      .+.++.++ .++.|..++.+      .  ...++..|++
T Consensus         9 ~~~~~~~~~~--~~~~~v~v~f~a~wC~~C~~~~~------~~~~~~~~~~~~~~~~vd~~------~--~~~~~~~~~v   72 (107)
T 1gh2_A            9 DPDFQPELSG--AGSRLAVVKFTMRGCGPCLRIAP------AFSSMSNKYPQAVFLEVDVH------Q--CQGTAATNNI   72 (107)
T ss_dssp             GGGHHHHHHH--TTTSCEEEEEECSSCHHHHHHHH------HHHHHHHHCTTSEEEEEETT------T--SHHHHHHTTC
T ss_pred             HHHHHHHHHh--CCCCEEEEEEECCCChhhHHHHH------HHHHHHHHCCCcEEEEEECc------c--CHHHHHhcCC
Confidence            4567777654  56899999999999999999853      33443330 26889888887      3  2458899999


Q ss_pred             CCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHH
Q 036413          211 DSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFM  247 (346)
Q Consensus       211 ~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl  247 (346)
                      ..+|++.++.  .|+.+..+.|. .++++.+.|.+.+
T Consensus        73 ~~~Pt~~~~~--~G~~~~~~~G~-~~~~l~~~l~~~l  106 (107)
T 1gh2_A           73 SATPTFQFFR--NKVRIDQYQGA-DAVGLEEKIKQHL  106 (107)
T ss_dssp             CSSSEEEEEE--TTEEEEEEESS-CHHHHHHHHHHHH
T ss_pred             CcccEEEEEE--CCeEEEEEeCC-CHHHHHHHHHHhc
Confidence            9999999884  69988889995 4555665555543

>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A

Probab=98.23  E-value=4.6e-06  Score=66.90  Aligned_cols=92  Identities=13%  Similarity=0.141  Sum_probs=67.0

Q ss_pred             HHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCCCCce
Q 036413          136 EKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPV  215 (346)
Q Consensus       136 ~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~  215 (346)
                      .+.++.+.+.+|.++|++.++||..|+.+...+   ..+.+-..  ++.|..++.+      ..  ..++..|++..+|+
T Consensus        20 ~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l---~~~~~~~~--~v~~~~vd~~------~~--~~l~~~~~v~~~Pt   86 (114)
T 2oe3_A           20 LTEFRNLIKQNDKLVIDFYATWCGPCKMMQPHL---TKLIQAYP--DVRFVKCDVD------ES--PDIAKECEVTAMPT   86 (114)
T ss_dssp             HHHHHHHHHHCSEEEEEEECTTCHHHHHTHHHH---HHHHHHCT--TSEEEEEETT------TC--HHHHHHTTCCSBSE
T ss_pred             HHHHHHHHhCCCEEEEEEECCCCHHHHHHHHHH---HHHHHHCC--CCEEEEEECC------CC--HHHHHHCCCCcccE
Confidence            444555566889999999999999999985432   22333333  3788888877      22  46889999999999


Q ss_pred             EEEEeCCCCceEEEEeCCCChHHHHHHH
Q 036413          216 VLVIDPITGEKMRKWCGMVDPVSLLEDL  243 (346)
Q Consensus       216 i~iidp~tge~l~~~~G~~~~~~~i~~L  243 (346)
                      +.++  ..|+.+..+.|.. +++|.+.|
T Consensus        87 ~~~~--~~G~~~~~~~G~~-~~~l~~~l  111 (114)
T 2oe3_A           87 FVLG--KDGQLIGKIIGAN-PTALEKGI  111 (114)
T ss_dssp             EEEE--ETTEEEEEEESSC-HHHHHHHH
T ss_pred             EEEE--eCCeEEEEEeCCC-HHHHHHHH
Confidence            8876  3699998899976 66555444

>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa}

Probab=98.22  E-value=3.6e-07  Score=73.97  Aligned_cols=101  Identities=14%  Similarity=0.274  Sum_probs=79.6

Q ss_pred             cccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccC--cEEEEEeecCCCCCCCChHHHHHHhhc
Q 036413          131 FNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRAS--NFIFWQVYDDDDDDDDDSECRKVCGYY  208 (346)
Q Consensus       131 ~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~--nFVfw~~~~~~~~~~~~~eg~~~~~~y  208 (346)
                      -..+|++++..|+..+|+++|++.++||..|+.+.      +.+.++.+ .  ++.|..++.+      .  ...++..|
T Consensus        21 ~~~~~~~~l~~~~~~~~~~vv~f~~~~C~~C~~~~------~~l~~~~~-~~~~v~~~~v~~~------~--~~~~~~~~   85 (130)
T 1wmj_A           21 NKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIA------PVFAEYAK-KFPGAVFLKVDVD------E--LKEVAEKY   85 (130)
T ss_dssp             SSHHHHHHHHHHHTTTCBCBEECCSSSCSCSSSSH------HHHHHHHH-HCTTBCCEECCTT------T--SGGGHHHH
T ss_pred             CHHHHHHHHHHHhhcCCEEEEEEECCCChhHHHHH------HHHHHHHH-HCCCCEEEEEecc------c--hHHHHHHc
Confidence            35679999999999999999999999999999985      34455554 3  5777777666      2  24688899


Q ss_pred             CCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHHc
Q 036413          209 KLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMES  249 (346)
Q Consensus       209 ~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~~  249 (346)
                      ++..+|++.++  ..|+.+..+.| .+++++.+.|.+.+..
T Consensus        86 ~v~~~Pt~~~~--~~g~~~~~~~g-~~~~~l~~~l~~~~~~  123 (130)
T 1wmj_A           86 NVEAMPTFLFI--KDGAEADKVVG-ARKDDLQNTIVKHVGA  123 (130)
T ss_dssp             TCCSSCCCCBC--TTTTCCBCCCT-TCTTTHHHHHHHHTSS
T ss_pred             CCCccceEEEE--eCCeEEEEEeC-CCHHHHHHHHHHHHhc
Confidence            99999998777  46888888888 4777787777777654

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.21  E-value=6.6e-06  Score=76.00  Aligned_cols=102  Identities=13%  Similarity=0.195  Sum_probs=80.3

Q ss_pred             ccccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcC
Q 036413          130 MFNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYK  209 (346)
Q Consensus       130 ~~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~  209 (346)
                      +-..+|++.+  ....+|+++|++..+||..|+.+...+   +.+.+-.. .+++|..++++      ..  ..++..|+
T Consensus        12 ~~~~~f~~~~--~~~~~~~v~v~f~a~wC~~C~~~~p~~---~~~~~~~~-~~~~~~~vd~~------~~--~~~~~~~~   77 (287)
T 3qou_A           12 INESNLQQVL--EQSMTTPVLFYFWSERSQHCLQLTPIL---ESLAAQYN-GQFILAKLDCD------AE--QMIAAQFG   77 (287)
T ss_dssp             CCTTTHHHHH--TTTTTSCEEEEEECTTCTTTTTTHHHH---HHHHHHHT-SSSEEEEEETT------TC--HHHHHTTT
T ss_pred             CCHHHHHHHH--HhcCCCeEEEEEECCCChHHHHHHHHH---HHHHHHcC-CCeEEEEEeCc------cC--HHHHHHcC
Confidence            4466788855  345689999999999999999996433   34444455 67999999888      32  47899999


Q ss_pred             CCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHH
Q 036413          210 LDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFM  247 (346)
Q Consensus       210 ~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl  247 (346)
                      +..+|++.++.  .|+.+..+.|..+.+.+...|...+
T Consensus        78 v~~~Pt~~~~~--~G~~~~~~~g~~~~~~l~~~l~~~l  113 (287)
T 3qou_A           78 LRAIPTVYLFQ--NGQPVDGFQGPQPEEAIRALLDXVL  113 (287)
T ss_dssp             CCSSSEEEEEE--TTEEEEEEESCCCHHHHHHHHHHHS
T ss_pred             CCCCCeEEEEE--CCEEEEEeeCCCCHHHHHHHHHHHc
Confidence            99999999994  6999989999888887777776654

>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}

Probab=98.21  E-value=5.5e-06  Score=70.46  Aligned_cols=91  Identities=13%  Similarity=0.215  Sum_probs=74.7

Q ss_pred             hcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCCCCceEEEEeCCC
Q 036413          144 DENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVLVIDPIT  223 (346)
Q Consensus       144 ~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~i~iidp~t  223 (346)
                      +.+|.+||++.++||..|+.+...+   +.+.+-+. .++.|..++.+      ..  ..++..|++..+|++.++.  .
T Consensus        62 ~~~~~vlv~F~a~wC~~C~~~~p~l---~~la~~~~-~~v~~~~vd~~------~~--~~l~~~~~i~~~Pt~~~~~--~  127 (155)
T 2ppt_A           62 RDDLPLLVDFWAPWCGPCRQMAPQF---QAAAATLA-GQVRLAKIDTQ------AH--PAVAGRHRIQGIPAFILFH--K  127 (155)
T ss_dssp             TCSSCEEEEEECTTCHHHHHHHHHH---HHHHHHHT-TTCEEEEEETT------TS--THHHHHTTCCSSSEEEEEE--T
T ss_pred             hCCCcEEEEEECCCCHHHHHHHHHH---HHHHHHcc-CCEEEEEEeCC------cc--HHHHHHcCCCcCCEEEEEe--C
Confidence            7789999999999999999996543   34555555 67999999887      22  4688999999999999984  6


Q ss_pred             CceEEEEeCCCChHHHHHHHHHHHH
Q 036413          224 GEKMRKWCGMVDPVSLLEDLLSFME  248 (346)
Q Consensus       224 ge~l~~~~G~~~~~~~i~~L~~fl~  248 (346)
                      |+.+..+.|..+.++|.+.|.+.+.
T Consensus       128 G~~~~~~~G~~~~~~l~~~l~~~l~  152 (155)
T 2ppt_A          128 GRELARAAGARPASELVGFVRGKLG  152 (155)
T ss_dssp             TEEEEEEESCCCHHHHHHHHHHHHC
T ss_pred             CeEEEEecCCCCHHHHHHHHHHHhc
Confidence            9999899999898888888887764

>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}

Probab=98.21  E-value=3.5e-06  Score=68.07  Aligned_cols=96  Identities=16%  Similarity=0.272  Sum_probs=71.6

Q ss_pred             cCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCCC
Q 036413          133 GSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDS  212 (346)
Q Consensus       133 gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~  212 (346)
                      .+|++++    +.+|.++|++.++||..|+.+...+   ..+.+-+...++.|..++.+      .  ...++..|++..
T Consensus        24 ~~f~~~l----~~~k~vvv~f~a~~C~~C~~~~~~l---~~l~~~~~~~~v~~~~vd~d------~--~~~~~~~~~v~~   88 (121)
T 2j23_A           24 DQFKQVT----GGDKVVVIDFWATWCGPCKMIGPVF---EKISDTPAGDKVGFYKVDVD------E--QSQIAQEVGIRA   88 (121)
T ss_dssp             HHHHHHH----SSSSCEEEEEECTTCSTHHHHHHHH---HHHHTSTHHHHSEEEEEETT------T--CHHHHHHHTCCS
T ss_pred             HHHHHHH----cCCCEEEEEEECCCCHhHHHHHHHH---HHHHHHCcCCcEEEEEEECc------C--CHHHHHHcCCCc
Confidence            3455555    7789999999999999999996443   23333333123899998887      3  246888999999


Q ss_pred             CceEEEEeCCCCceEEEEeCCCChHHHHHHHHHH
Q 036413          213 LPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSF  246 (346)
Q Consensus       213 ~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~f  246 (346)
                      +|++.++.  .|+.+..+.|. +++++.+.|.+.
T Consensus        89 ~Pt~~~~~--~G~~~~~~~G~-~~~~l~~~l~~~  119 (121)
T 2j23_A           89 MPTFVFFK--NGQKIDTVVGA-DPSKLQAAITQH  119 (121)
T ss_dssp             SSEEEEEE--TTEEEEEEESS-CHHHHHHHHHHH
T ss_pred             ccEEEEEE--CCeEEeeEcCC-CHHHHHHHHHHh
Confidence            99998885  69988889998 887777766654

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}

Probab=98.20  E-value=2.8e-06  Score=76.30  Aligned_cols=103  Identities=14%  Similarity=0.166  Sum_probs=81.3

Q ss_pred             cccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCC
Q 036413          131 FNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKL  210 (346)
Q Consensus       131 ~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~  210 (346)
                      -..+|++++   .+.+|.+||++.++||..|+.+...+   +.+.+.++ .++.|..++.+      ..  ..++..|++
T Consensus        18 t~~~f~~~v---~~~~k~vvv~F~a~wC~~C~~~~p~l---~~l~~~~~-~~v~~~~vd~d------~~--~~l~~~~~v   82 (222)
T 3dxb_A           18 TDDSFDTDV---LKADGAILVDFWAEWCGPCKMIAPIL---DEIADEYQ-GKLTVAKLNID------QN--PGTAPKYGI   82 (222)
T ss_dssp             CTTTHHHHH---TTCSSCEEEEEECTTCHHHHHHHHHH---HHHHHHTT-TTCEEEEEETT------TC--TTTGGGGTC
T ss_pred             CHHHHHHHH---HhcCCEEEEEEECCcCHHHHHHHHHH---HHHHHHhc-CCcEEEEEECC------CC--HHHHHHcCC
Confidence            355666654   45789999999999999999996543   45555566 67888888887      22  347889999


Q ss_pred             CCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHHcC
Q 036413          211 DSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMESG  250 (346)
Q Consensus       211 ~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~~~  250 (346)
                      ..+|++.++.  .|+.+....|..+.++|.+.|.+.+...
T Consensus        83 ~~~Pt~~~~~--~G~~~~~~~G~~~~~~l~~~l~~~l~~~  120 (222)
T 3dxb_A           83 RGIPTLLLFK--NGEVAATKVGALSKGQLKEFLDANLAGS  120 (222)
T ss_dssp             CSBSEEEEEE--TTEEEEEEESCCCHHHHHHHHHHHSCCS
T ss_pred             CcCCEEEEEE--CCeEEEEeccccChHHHHHHHHhhcccc
Confidence            9999999996  6999989999999998888888887543

>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A

Probab=98.19  E-value=4.2e-06  Score=70.57  Aligned_cols=99  Identities=17%  Similarity=0.312  Sum_probs=75.5

Q ss_pred             ccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhc-cCcEEEEEeecCCCCCCCChHHHHHHhhcCC
Q 036413          132 NGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIR-ASNFIFWQVYDDDDDDDDDSECRKVCGYYKL  210 (346)
Q Consensus       132 ~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~-~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~  210 (346)
                      ..+|++++..+  .+|++||++.++||..|+.+..      .+.++.+ -.++.|..++.+      .  ...++..|++
T Consensus        20 ~~~~~~~~~~~--~~~~vvv~F~a~wC~~C~~~~p------~l~~l~~~~~~v~~~~vd~~------~--~~~l~~~~~v   83 (153)
T 2wz9_A           20 AGQFEELLRLK--AKSLLVVHFWAPWAPQCAQMNE------VMAELAKELPQVSFVKLEAE------G--VPEVSEKYEI   83 (153)
T ss_dssp             HHHHHHHHHHT--TTSCEEEEEECTTCHHHHHHHH------HHHHHHHHCTTSEEEEEETT------T--SHHHHHHTTC
T ss_pred             HHHHHHHHHhc--CCCeEEEEEECCCCHhHHHHHH------HHHHHHHHcCCeEEEEEECC------C--CHHHHHHcCC
Confidence            45677666543  4899999999999999999853      3444443 036899998887      3  2468899999


Q ss_pred             CCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHHc
Q 036413          211 DSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMES  249 (346)
Q Consensus       211 ~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~~  249 (346)
                      ..+|++.+++  .|+.+..+.|. +++++.+.|.+.+..
T Consensus        84 ~~~Pt~~~~~--~G~~~~~~~G~-~~~~l~~~i~~~l~~  119 (153)
T 2wz9_A           84 SSVPTFLFFK--NSQKIDRLDGA-HAPELTKKVQRHASS  119 (153)
T ss_dssp             CSSSEEEEEE--TTEEEEEEESS-CHHHHHHHHHHHSCT
T ss_pred             CCCCEEEEEE--CCEEEEEEeCC-CHHHHHHHHHHHhcc
Confidence            9999999999  69988888994 777777777776644

>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A

Probab=98.18  E-value=5.2e-06  Score=68.86  Aligned_cols=99  Identities=12%  Similarity=0.126  Sum_probs=74.0

Q ss_pred             hhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChH-------------------HH
Q 036413          142 GSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSE-------------------CR  202 (346)
Q Consensus       142 Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~e-------------------g~  202 (346)
                      +.-.+|++||++.++||..|+.+...+   ..+.+-+.+.++.+..++.+.     +++                   ..
T Consensus        22 ~~~~gk~vlv~F~~~~C~~C~~~~~~l---~~~~~~~~~~~v~vv~v~~d~-----~~~~~~~~~~~~~~~~~~~~d~~~   93 (151)
T 2f9s_A           22 SDLKGKGVFLNFWGTWCEPCKKEFPYM---ANQYKHFKSQGVEIVAVNVGE-----SKIAVHNFMKSYGVNFPVVLDTDR   93 (151)
T ss_dssp             GGGTTSEEEEEEECTTCHHHHHHHHHH---HHHHHHHGGGTEEEEEEEESC-----CHHHHHHHHHHHTCCSCEEEETTS
T ss_pred             HHcCCCEEEEEEECCCCHHHHHHHHHH---HHHHHHhccCCeEEEEEECCC-----CHHHHHHHHHHcCCCceEEECCch
Confidence            344689999999999999998775432   122232331478888888872     221                   24


Q ss_pred             HHHhhcCCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHHc
Q 036413          203 KVCGYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMES  249 (346)
Q Consensus       203 ~~~~~y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~~  249 (346)
                      .++..|++..+|++.|||+ .|+.+..+.|..+++++.+.|...+..
T Consensus        94 ~~~~~~~v~~~P~~~lid~-~G~i~~~~~G~~~~~~l~~~l~~ll~~  139 (151)
T 2f9s_A           94 QVLDAYDVSPLPTTFLINP-EGKVVKVVTGTMTESMIHDYMNLIKPG  139 (151)
T ss_dssp             HHHHHTTCCSSCEEEEECT-TSEEEEEEESCCCHHHHHHHHHHHSCC
T ss_pred             HHHHhcCCCCCCeEEEECC-CCcEEEEEeCCCCHHHHHHHHHHHHhh
Confidence            6778899999999999997 699999999998998888888877654

>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A

Probab=98.17  E-value=4e-06  Score=67.39  Aligned_cols=93  Identities=18%  Similarity=0.117  Sum_probs=70.1

Q ss_pred             hhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccC--cEEEEEeecCCCCCCCC--------------------h
Q 036413          142 GSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRAS--NFIFWQVYDDDDDDDDD--------------------S  199 (346)
Q Consensus       142 Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~--nFVfw~~~~~~~~~~~~--------------------~  199 (346)
                      +.-.+|++||++.++||..|+.+.      +.+.++.+ +  ++.+..++.+.     +                    .
T Consensus        21 ~~~~~k~~ll~f~~~~C~~C~~~~------~~l~~~~~-~~~~~~~~~v~~~~-----~~~~~~~~~~~~~~~~~~~~~d   88 (136)
T 1zzo_A           21 ESLLGKPAVLWFWAPWCPTCQGEA------PVVGQVAA-SHPEVTFVGVAGLD-----QVPAMQEFVNKYPVKTFTQLAD   88 (136)
T ss_dssp             GGGTTSCEEEEEECTTCHHHHHHH------HHHHHHHH-HCTTSEEEEEECSS-----CHHHHHHHHHHTTCTTSEEEEC
T ss_pred             HHhCCCeEEEEEEcCCChhHHHHH------HHHHHHHH-HcCCeEEEEEeCCC-----CHHHHHHHHHHcCCCceEEEEc
Confidence            344689999999999999998874      44455544 2  67777777661     1                    1


Q ss_pred             HHHHHHhhcCCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHH
Q 036413          200 ECRKVCGYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFME  248 (346)
Q Consensus       200 eg~~~~~~y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~  248 (346)
                      ....++..|++..+|++.|||+ .|+.+ .+.|..+.+++.+.|.+.+.
T Consensus        89 ~~~~~~~~~~i~~~P~~~~id~-~g~i~-~~~g~~~~~~l~~~l~~~l~  135 (136)
T 1zzo_A           89 TDGSVWANFGVTQQPAYAFVDP-HGNVD-VVRGRMSQDELTRRVTALTS  135 (136)
T ss_dssp             TTCHHHHHTTCCSSSEEEEECT-TCCEE-EEESCCCHHHHHHHHHHHC-
T ss_pred             CCcHHHHHcCCCCCceEEEECC-CCCEE-EEecCCCHHHHHHHHHHHhc
Confidence            2346778899999999999997 68888 88998898888888877653

>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae}

Probab=98.16  E-value=9.3e-06  Score=64.92  Aligned_cols=99  Identities=14%  Similarity=0.233  Sum_probs=70.0

Q ss_pred             hhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCCh--------------------HH
Q 036413          142 GSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDS--------------------EC  201 (346)
Q Consensus       142 Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~--------------------eg  201 (346)
                      +.-.+|++||++.++||..|+.+-..+   ..+.+-.. .++.+..++....+.+++.                    ..
T Consensus        18 ~~~~gk~~lv~f~~~~C~~C~~~~~~l---~~~~~~~~-~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~   93 (138)
T 4evm_A           18 SDYKGKKVYLKFWASWCSICLASLPDT---DEIAKEAG-DDYVVLTVVSPGHKGEQSEADFKNWYKGLDYKNLPVLVDPS   93 (138)
T ss_dssp             GGGTTSEEEEEECCTTCHHHHHHHHHH---HHHHHTCT-TTEEEEEEECTTSTTCCCHHHHHHHHTTCCCTTCCEEECTT
T ss_pred             HHhCCCEEEEEEEcCcCHHHHHHHHHH---HHHHHHhC-CCcEEEEEEcCCCCchhhHHHHHHHHhhcCCCCeeEEECcc
Confidence            334689999999999999998875443   23333344 6788888743310111111                    12


Q ss_pred             HHHHhhcCCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHH
Q 036413          202 RKVCGYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLS  245 (346)
Q Consensus       202 ~~~~~~y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~  245 (346)
                      ..++..|++..+|++.|||+ .|+.+..+.|..+++++.+.|.+
T Consensus        94 ~~~~~~~~v~~~P~~~lid~-~G~i~~~~~g~~~~~~l~~~l~~  136 (138)
T 4evm_A           94 GKLLETYGVRSYPTQAFIDK-EGKLVKTHPGFMEKDAILQTLKE  136 (138)
T ss_dssp             CHHHHHTTCCSSSEEEEECT-TCCEEEEEESCCCHHHHHHHHHH
T ss_pred             hHHHHHcCcccCCeEEEECC-CCcEEEeecCCCcHHHHHHHHHh
Confidence            35778899999999999997 69999999999898887777654

>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}

Probab=98.16  E-value=1.1e-05  Score=64.94  Aligned_cols=102  Identities=16%  Similarity=0.241  Sum_probs=75.1

Q ss_pred             cccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCC
Q 036413          131 FNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKL  210 (346)
Q Consensus       131 ~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~  210 (346)
                      ..|+.++..+..++.+|++||++.++||..|+.+...+   +.+.+-+  .++.|..++.+      ..  ..++..|++
T Consensus         8 ~~g~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~~~l---~~l~~~~--~~v~~~~vd~~------~~--~~~~~~~~i   74 (118)
T 2f51_A            8 FNGTHEALLNRIKEAPGLVLVDFFATWCGPCQRLGQIL---PSIAEAN--KDVTFIKVDVD------KN--GNAADAYGV   74 (118)
T ss_dssp             ECSCHHHHHHHHHHCSSCEEEEEECTTCHHHHHHHHHH---HHHHHHC--TTSEEEEEETT------TC--HHHHHHTTC
T ss_pred             ecCCHHHHHHHHHhCCCEEEEEEECCCCHHHHHHHHHH---HHHHHHC--CCeEEEEEECC------CC--HHHHHhcCC
Confidence            46777777766667899999999999999999986443   2333322  37889998887      32  468899999


Q ss_pred             CCCceEEEEeC--CCCceEEEEeCCCChHHHHHHHHHH
Q 036413          211 DSLPVVLVIDP--ITGEKMRKWCGMVDPVSLLEDLLSF  246 (346)
Q Consensus       211 ~~~P~i~iidp--~tge~l~~~~G~~~~~~~i~~L~~f  246 (346)
                      ..+|++.+++.  ..|+.+..+.|..+ .++...+.++
T Consensus        75 ~~~Pt~~~~~~~~~~G~~~~~~~G~~~-~~l~~~~~~~  111 (118)
T 2f51_A           75 SSIPALFFVKKEGNEIKTLDQFVGADV-SRIKADIEKF  111 (118)
T ss_dssp             CSSSEEEEEEEETTEEEEEEEEESCCH-HHHHHHHHHH
T ss_pred             CCCCEEEEEeCCCCcceEEEeecCCCH-HHHHHHHHHh
Confidence            99999999974  13788888999654 4455555544

>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=98.14  E-value=4.6e-06  Score=67.30  Aligned_cols=92  Identities=12%  Similarity=0.060  Sum_probs=69.6

Q ss_pred             hhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccC--cEEEEEeecCCCCCCCCh-------------------H
Q 036413          142 GSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRAS--NFIFWQVYDDDDDDDDDS-------------------E  200 (346)
Q Consensus       142 Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~--nFVfw~~~~~~~~~~~~~-------------------e  200 (346)
                      +.-.+|+++|++.++||..|+.+.      +.+.++.+ +  ++.|+.++.+.     +.                   .
T Consensus        20 ~~~~~k~~lv~f~~~~C~~C~~~~------~~l~~~~~-~~~~~~~~~v~~~~-----~~~~~~~~~~~~~~~~~~~~d~   87 (136)
T 1lu4_A           20 ASLQGKPAVLWFWTPWCPFCNAEA------PSLSQVAA-ANPAVTFVGIATRA-----DVGAMQSFVSKYNLNFTNLNDA   87 (136)
T ss_dssp             GGGTTSCEEEEEECTTCHHHHHHH------HHHHHHHH-HCTTSEEEEEECSS-----CHHHHHHHHHHHTCCSEEEECT
T ss_pred             HHhCCCEEEEEEECCcChhHHHHH------HHHHHHHH-HCCCcEEEEEEcCC-----CHHHHHHHHHHcCCCceEEECC
Confidence            344689999999999999998874      44455554 2  67788887761     11                   1


Q ss_pred             HHHHHhhcCCCCCceEEEEeCCCCceEEEEe---CCCChHHHHHHHHHHH
Q 036413          201 CRKVCGYYKLDSLPVVLVIDPITGEKMRKWC---GMVDPVSLLEDLLSFM  247 (346)
Q Consensus       201 g~~~~~~y~~~~~P~i~iidp~tge~l~~~~---G~~~~~~~i~~L~~fl  247 (346)
                      ...++..|++..+|++.|||+ .|+.+ .+.   |..+++++.+.|.+.+
T Consensus        88 ~~~~~~~~~i~~~P~~~lid~-~G~i~-~~~~~~g~~~~~~l~~~l~~ll  135 (136)
T 1lu4_A           88 DGVIWARYNVPWQPAFVFYRA-DGTST-FVNNPTAAMSQDELSGRVAALT  135 (136)
T ss_dssp             TSHHHHHTTCCSSSEEEEECT-TSCEE-EECCSSSCCCHHHHHHHHHHC-
T ss_pred             chhHHHhcCCCCCCEEEEECC-CCcEE-EEEcCCCccCHHHHHHHHHHHh
Confidence            346778899999999999997 68888 888   9889888888777643

>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum}

Probab=98.14  E-value=5.3e-06  Score=68.49  Aligned_cols=99  Identities=11%  Similarity=0.123  Sum_probs=73.0

Q ss_pred             ccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccC-cEEEEEeecCCCCCCCChHHHHHHhhcCC
Q 036413          132 NGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRAS-NFIFWQVYDDDDDDDDDSECRKVCGYYKL  210 (346)
Q Consensus       132 ~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~-nFVfw~~~~~~~~~~~~~eg~~~~~~y~~  210 (346)
                      ...|++++.  ...+|++||++.++||..|+.+.      +.+.++.+ + +++|..++.+      .  ...++..|++
T Consensus        28 ~~~~~~~l~--~~~~k~vvv~F~a~wC~~C~~~~------p~l~~l~~-~~~v~~~~vd~~------~--~~~l~~~~~v   90 (133)
T 3cxg_A           28 TGSLNQVFS--STQNSSIVIKFGAVWCKPCNKIK------EYFKNQLN-YYYVTLVDIDVD------I--HPKLNDQHNI   90 (133)
T ss_dssp             TTHHHHHHT--C-CCSEEEEEEECTTCHHHHHTH------HHHHGGGG-TEECEEEEEETT------T--CHHHHHHTTC
T ss_pred             hhHHHHHHH--hcCCCEEEEEEECCCCHHHHHHH------HHHHHHHH-hcCEEEEEEecc------c--hHHHHHhcCC
Confidence            356766664  33489999999999999999983      44555555 3 4688888776      2  3568889999


Q ss_pred             CCCceEEEEeCCCCc--eEEEEeCCCChHHHHHHHHHHHH
Q 036413          211 DSLPVVLVIDPITGE--KMRKWCGMVDPVSLLEDLLSFME  248 (346)
Q Consensus       211 ~~~P~i~iidp~tge--~l~~~~G~~~~~~~i~~L~~fl~  248 (346)
                      ..+|++.++....|+  .+..+.|. ++++|.+.|.+.+.
T Consensus        91 ~~~Pt~~~~~~~~g~g~~~~~~~G~-~~~~l~~~l~~~l~  129 (133)
T 3cxg_A           91 KALPTFEFYFNLNNEWVLVHTVEGA-NQNDIEKAFQKYCL  129 (133)
T ss_dssp             CSSSEEEEEEEETTEEEEEEEEESC-CHHHHHHHHHHHSE
T ss_pred             CCCCEEEEEEecCCCeEEEEEEcCC-CHHHHHHHHHHHHH
Confidence            999999999312466  77888897 78888777777654

>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0

Probab=98.13  E-value=4.9e-06  Score=67.75  Aligned_cols=93  Identities=9%  Similarity=0.080  Sum_probs=69.0

Q ss_pred             HhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhc---cCcEEEEEeecCCCCCCCC-------------------
Q 036413          141 VGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIR---ASNFIFWQVYDDDDDDDDD-------------------  198 (346)
Q Consensus       141 ~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~---~~nFVfw~~~~~~~~~~~~-------------------  198 (346)
                      .+. .+|++||++.++||..|+.+..      .+.++.+   +.++.++.++.+.  .+++                   
T Consensus        30 l~~-~gk~~ll~f~~~~C~~C~~~~~------~l~~~~~~~~~~~~~~v~v~~d~--~~~~~~~~~~~~~~~~~~~~~~~  100 (145)
T 3erw_A           30 IPN-KGQKTILHFWTSWCPPCKKELP------QFQSFYDAHPSDSVKLVTVNLVN--SEQNQQVVEDFIKANKLTFPIVL  100 (145)
T ss_dssp             ESC-TTSEEEEEEECSSCHHHHHHHH------HHHHHHHHCCCSSEEEEEEECGG--GSSCHHHHHHHHHHTTCCSCEEE
T ss_pred             HHH-CCCEEEEEEECCCCHHHHHHHH------HHHHHHHHcCCCCEEEEEEEccC--CcCCHHHHHHHHHHcCCceeEEE
Confidence            344 8899999999999999988753      3333333   2578888888761  0001                   


Q ss_pred             hHHHHHHhhcCCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHH
Q 036413          199 SECRKVCGYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDL  243 (346)
Q Consensus       199 ~eg~~~~~~y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L  243 (346)
                      .....++..|++..+|++.|||+ .|+.+..+.|..+.++|.+.|
T Consensus       101 d~~~~~~~~~~v~~~P~~~lid~-~G~i~~~~~g~~~~~~l~~~l  144 (145)
T 3erw_A          101 DSKGELMKEYHIITIPTSFLLNE-KGEIEKTKIGPMTAEQLKEWT  144 (145)
T ss_dssp             CSSSHHHHHTTCCEESEEEEECT-TCCEEEEEESCCCHHHHHHHH
T ss_pred             cCchhHHHhcCcCccCeEEEEcC-CCcEEEEEcCCcCHHHHHHhh
Confidence            11346788999999999999996 699999999998988776654

>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2

Probab=98.13  E-value=2.3e-06  Score=67.63  Aligned_cols=99  Identities=15%  Similarity=0.253  Sum_probs=71.0

Q ss_pred             ccccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhcc--CcEEEEEeecCCCCCCCChHHHHHHhh
Q 036413          130 MFNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRA--SNFIFWQVYDDDDDDDDDSECRKVCGY  207 (346)
Q Consensus       130 ~~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~--~nFVfw~~~~~~~~~~~~~eg~~~~~~  207 (346)
                      +-..+|++++.    .+|++||++.++||..|+.+...+   ..+.+-+++  .+++|..++.+      .  ...++..
T Consensus        12 l~~~~~~~~~~----~~~~~lv~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~v~~~~vd~~------~--~~~~~~~   76 (120)
T 1mek_A           12 LRKSNFAEALA----AHKYLLVEFYAPWCGHCKALAPEY---AKAAGKLKAEGSEIRLAKVDAT------E--ESDLAQQ   76 (120)
T ss_dssp             CCTTTHHHHHH----HCSEEEEEEECSSCSTTSTTHHHH---HHHHHTTTTTCCCCBCEEEETT------T--CCSSHHH
T ss_pred             echhhHHHHHc----cCCeEEEEEECCCCHHHHHhhHHH---HHHHHHHhccCCcEEEEEEcCC------C--CHHHHHH
Confidence            34567887663    579999999999999999985332   122232320  25888888776      2  1367888


Q ss_pred             cCCCCCceEEEEeCCCCceE--EEEeCCCChHHHHHHHHH
Q 036413          208 YKLDSLPVVLVIDPITGEKM--RKWCGMVDPVSLLEDLLS  245 (346)
Q Consensus       208 y~~~~~P~i~iidp~tge~l--~~~~G~~~~~~~i~~L~~  245 (346)
                      |++..+|++.++.  .|+.+  ..+.|..+.+.|.+.|.+
T Consensus        77 ~~v~~~Pt~~~~~--~g~~~~~~~~~g~~~~~~l~~~l~~  114 (120)
T 1mek_A           77 YGVRGYPTIKFFR--NGDTASPKEYTAGREADDIVNWLKK  114 (120)
T ss_dssp             HTCCSSSEEEEEE--SSCSSSCEECCCCSSHHHHHHHHHT
T ss_pred             CCCCcccEEEEEe--CCCcCCcccccCccCHHHHHHHHHh
Confidence            9999999999994  58776  778898888776666554

>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A

Probab=98.12  E-value=6.4e-06  Score=65.37  Aligned_cols=96  Identities=9%  Similarity=0.111  Sum_probs=71.4

Q ss_pred             cccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccC--cEEEEEeecCCCCCCCChHHHHHHhhc
Q 036413          131 FNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRAS--NFIFWQVYDDDDDDDDDSECRKVCGYY  208 (346)
Q Consensus       131 ~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~--nFVfw~~~~~~~~~~~~~eg~~~~~~y  208 (346)
                      -..+| +++    .++|.++|++.++||..|+.+.      +.+.++.+ .  ++.|..++.+        +...++..|
T Consensus         9 ~~~~f-~~~----~~~~~~vv~f~a~wC~~C~~~~------~~l~~~~~-~~~~v~~~~vd~~--------~~~~l~~~~   68 (110)
T 2l6c_A            9 TEAGM-AHF----EGLSDAIVFFHKNLCPHCKNME------KVLDKFGA-RAPQVAISSVDSE--------ARPELMKEL   68 (110)
T ss_dssp             GGCSH-HHH----TTCSEEEEEEECSSCSTHHHHH------HHHHHHHT-TCTTSCEEEEEGG--------GCHHHHHHT
T ss_pred             CHHHH-HHH----HcCCCEEEEEECCCCHhHHHHH------HHHHHHHH-HCCCcEEEEEcCc--------CCHHHHHHc
Confidence            34567 544    3568999999999999999984      34455444 3  4677777665        235688899


Q ss_pred             CCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHH
Q 036413          209 KLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFME  248 (346)
Q Consensus       209 ~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~  248 (346)
                      ++..+|++.++  ..|+.+.++.|..++++|...|..+..
T Consensus        69 ~v~~~Pt~~~~--~~G~~v~~~~G~~~~~~l~~~~~~~~~  106 (110)
T 2l6c_A           69 GFERVPTLVFI--RDGKVAKVFSGIMNPRELQALYASIHH  106 (110)
T ss_dssp             TCCSSCEEEEE--ESSSEEEEEESCCCHHHHHHHHHTC--
T ss_pred             CCcccCEEEEE--ECCEEEEEEcCCCCHHHHHHHHHHHhh
Confidence            99999999999  369999999999898877776665543

>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}

Probab=98.12  E-value=1e-05  Score=67.21  Aligned_cols=105  Identities=17%  Similarity=0.100  Sum_probs=75.5

Q ss_pred             HHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhc---cCcEEEEEeecCCCCC----------------CCChH
Q 036413          140 DVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIR---ASNFIFWQVYDDDDDD----------------DDDSE  200 (346)
Q Consensus       140 ~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~---~~nFVfw~~~~~~~~~----------------~~~~e  200 (346)
                      ..+.-++|++||++..+||..|..+-.      .+.++.+   +.++.+..++.+..+.                +...+
T Consensus        18 ~l~~~~gk~vlv~F~a~wC~~C~~~~~------~l~~l~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~   91 (151)
T 3raz_A           18 SLQSLKAPVRIVNLWATWCGPCRKEMP------AMSKWYKAQKKGSVDMVGIALDTSDNIGNFLKQTPVSYPIWRYTGAN   91 (151)
T ss_dssp             CGGGCCSSEEEEEEECTTCHHHHHHHH------HHHHHHHTSCTTTEEEEEEESSCHHHHHHHHHHSCCSSCEEEECCSC
T ss_pred             cHHHhCCCEEEEEEEcCcCHHHHHHHH------HHHHHHHHhccCCeEEEEEECCChHHHHHHHHHcCCCCceEecCccc
Confidence            334457899999999999999988743      3344332   2578898888761000                00123


Q ss_pred             HHHHHhhcC--CCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHHcCC
Q 036413          201 CRKVCGYYK--LDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMESGP  251 (346)
Q Consensus       201 g~~~~~~y~--~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~~~~  251 (346)
                      ...++..|+  +..+|++.|||+ .|+.+..+.|..+++++.+.|.......+
T Consensus        92 ~~~~~~~~~~~v~~~P~~~lid~-~G~i~~~~~g~~~~~~l~~~l~~l~~~~~  143 (151)
T 3raz_A           92 SRNFMKTYGNTVGVLPFTVVEAP-KCGYRQTITGEVNEKSLTDAVKLAHSKCR  143 (151)
T ss_dssp             HHHHHHTTTCCSCCSSEEEEEET-TTTEEEECCSCCCHHHHHHHHHHHHTC--
T ss_pred             hHHHHHHhCCccCCCCEEEEECC-CCcEEEEECCCCCHHHHHHHHHHHHHHhh
Confidence            455777788  889999999997 69999999999999998888888776544

>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A

Probab=98.12  E-value=6.8e-06  Score=69.50  Aligned_cols=98  Identities=15%  Similarity=0.269  Sum_probs=74.7

Q ss_pred             CHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhc--cCcEEEEEeecCCCCCCCChHHHHHHhhcCCC
Q 036413          134 SFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIR--ASNFIFWQVYDDDDDDDDDSECRKVCGYYKLD  211 (346)
Q Consensus       134 sf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~--~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~  211 (346)
                      +|++++.  ...+|++||++..+||..|+.+.      +.+.++.+  ..++.|+.++++      .  ...++..|++.
T Consensus        13 ~~~~~i~--~~~~k~vlv~F~a~WC~~C~~~~------p~l~~l~~~~~~~~~~~~vd~d------~--~~~l~~~~~v~   76 (149)
T 3gix_A           13 EVDQAIK--STAEKVLVLRFGRDEDPVCLQLD------DILSKTSSDLSKMAAIYLVDVD------Q--TAVYTQYFDIS   76 (149)
T ss_dssp             HHHHHHH--HCCSSEEEEEEECTTSHHHHHHH------HHHHHHHTTTTTTEEEEEEETT------T--CCHHHHHTTCC
T ss_pred             HHHHHHH--hcCCCEEEEEEECCCCHHHHHHH------HHHHHHHHHccCceEEEEEECC------c--CHHHHHHcCCC
Confidence            4555543  25789999999999999999985      33444433  156999999887      2  24588999999


Q ss_pred             CCceEEEEeCCCCceE---------EEEeC-CCChHHHHHHHHHHHHc
Q 036413          212 SLPVVLVIDPITGEKM---------RKWCG-MVDPVSLLEDLLSFMES  249 (346)
Q Consensus       212 ~~P~i~iidp~tge~l---------~~~~G-~~~~~~~i~~L~~fl~~  249 (346)
                      .+|++.+..  .|+.+         ..+.| ..+.++|.+.|...+..
T Consensus        77 ~~Pt~~~~~--~G~~v~~~~g~~~~~~~~G~~~~~~~l~~~l~~~~~~  122 (149)
T 3gix_A           77 YIPSTVFFF--NGQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVIYRG  122 (149)
T ss_dssp             SSSEEEEEE--TTEEEEEECSSSCCSCEESCCSSHHHHHHHHHHHHHH
T ss_pred             ccCeEEEEE--CCeEEEeecCCCCCCeEeeecCCHHHHHHHHHHHHHH
Confidence            999999444  58888         77889 88999998888887643

>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica}

Probab=98.12  E-value=9.9e-06  Score=62.42  Aligned_cols=95  Identities=15%  Similarity=0.293  Sum_probs=71.0

Q ss_pred             cCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhcc-CcEEEEEeecCCCCCCCChHHHHHHhhcCCC
Q 036413          133 GSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRA-SNFIFWQVYDDDDDDDDDSECRKVCGYYKLD  211 (346)
Q Consensus       133 gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~-~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~  211 (346)
                      .+|++++..  ..+|.++|++.++||..|+.+..      .+.++.++ .++.|..++.+      .  ...++..|++.
T Consensus         8 ~~~~~~l~~--~~~~~~~v~f~~~~C~~C~~~~~------~l~~~~~~~~~~~~~~v~~~------~--~~~~~~~~~v~   71 (104)
T 2vim_A            8 ADLEKLINE--NKGRLIVVDFFAQWCGPCRNIAP------KVEALAKEIPEVEFAKVDVD------Q--NEEAAAKYSVT   71 (104)
T ss_dssp             HHHHHHHHT--TTTSCEEEEEECTTCHHHHHHHH------HHHHHHHHCTTSEEEEEETT------T--CHHHHHHTTCC
T ss_pred             HHHHHHHHh--cCCCeEEEEEECCCCHHHHHhhH------HHHHHHHHCCCCEEEEEecc------C--CHHHHHHcCCc
Confidence            346666543  37899999999999999999853      34444440 26888888877      3  24688899999


Q ss_pred             CCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHH
Q 036413          212 SLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSF  246 (346)
Q Consensus       212 ~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~f  246 (346)
                      .+|++.++.  .|+.+..+.| .+++++.+.|.++
T Consensus        72 ~~Pt~~~~~--~g~~~~~~~G-~~~~~l~~~l~~~  103 (104)
T 2vim_A           72 AMPTFVFIK--DGKEVDRFSG-ANETKLRETITRH  103 (104)
T ss_dssp             SSSEEEEEE--TTEEEEEEES-SCHHHHHHHHHHH
T ss_pred             cccEEEEEe--CCcEEEEEeC-CCHHHHHHHHHhh
Confidence            999988885  6999888999 5777766666553

>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=98.12  E-value=8.4e-06  Score=67.58  Aligned_cols=95  Identities=19%  Similarity=0.201  Sum_probs=73.6

Q ss_pred             hhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCCh--------------------HHH
Q 036413          143 SDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDS--------------------ECR  202 (346)
Q Consensus       143 k~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~--------------------eg~  202 (346)
                      .-.+|++||++.++||..|+.+.      +.+.++.++.++.|+.++.+.     +.                    +..
T Consensus        39 ~~~gk~~ll~f~~~~C~~C~~~~------~~l~~l~~~~~v~~v~v~~~~-----~~~~~~~~~~~~~~~~~~~~~d~~~  107 (156)
T 1kng_A           39 AFKGKVSLVNVWASWCVPCHDEA------PLLTELGKDKRFQLVGINYKD-----AADNARRFLGRYGNPFGRVGVDANG  107 (156)
T ss_dssp             GGTTSCEEEEEECTTCHHHHHHH------HHHHHHTTCTTSEEEEEEESC-----CHHHHHHHHHHHCCCCSEEEEETTS
T ss_pred             HhCCCEEEEEEEcccCHhHHHHH------HHHHHHHhcCCeEEEEEECCC-----CHHHHHHHHHHcCCCCceeeeCchh
Confidence            33589999999999999998873      566677662348888877651     21                    123


Q ss_pred             HHHhhcCCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHHc
Q 036413          203 KVCGYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMES  249 (346)
Q Consensus       203 ~~~~~y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~~  249 (346)
                      .++..|++..+|++.|||+ .|+.+..+.|..+.+++.+.|.+.++.
T Consensus       108 ~~~~~~~v~~~P~~~~id~-~G~i~~~~~g~~~~~~l~~~l~~~l~~  153 (156)
T 1kng_A          108 RASIEWGVYGVPETFVVGR-EGTIVYKLVGPITPDNLRSVLLPQMEK  153 (156)
T ss_dssp             HHHHHTTCCSSCEEEEECT-TSBEEEEEESCCCHHHHHHTHHHHHHH
T ss_pred             HHHHhcCcCccCeEEEEcC-CCCEEEEEeCCCCHHHHHHHHHHHHHH
Confidence            5677899999999999997 699999999998998888888877653

>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A

Probab=98.11  E-value=2.9e-06  Score=73.23  Aligned_cols=98  Identities=16%  Similarity=0.121  Sum_probs=78.3

Q ss_pred             HHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCCh--------------------
Q 036413          140 DVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDS--------------------  199 (346)
Q Consensus       140 ~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~--------------------  199 (346)
                      ..+.-.+|++||++.++||..|...      -+.+.++.+ +++.++.+++++     +.                    
T Consensus        52 ~l~~~~gk~vll~F~a~~C~~C~~~------~~~l~~l~~-~~v~vv~vs~~d-----~~~~~~~~~~~~~~~~~~~~~d  119 (176)
T 3kh7_A           52 TEADLKGKPALVNVWGTWCPSCRVE------HPELTRLAE-QGVVIYGINYKD-----DNAAAIKWLNELHNPYLLSISD  119 (176)
T ss_dssp             EGGGGCSSCEEEEEECTTCHHHHHH------HHHHHHHHH-TTCEEEEEEESC-----CHHHHHHHHHHTTCCCSEEEEE
T ss_pred             cHHHhCCCEEEEEEECCcCHHHHHH------HHHHHHHHH-CCCEEEEEeCCC-----CHHHHHHHHHHcCCCCceEEEC
Confidence            3445568999999999999999887      367788888 788888888651     22                    


Q ss_pred             HHHHHHhhcCCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHHcC
Q 036413          200 ECRKVCGYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMESG  250 (346)
Q Consensus       200 eg~~~~~~y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~~~  250 (346)
                      ....++..|++..+|++.|||+ .|+.+..+.|..+++++.+.|.+.++..
T Consensus       120 ~~~~~~~~~~v~~~P~~~lid~-~G~i~~~~~g~~~~~~l~~~l~~~l~~l  169 (176)
T 3kh7_A          120 ADGTLGLDLGVYGAPETYLIDK-QGIIRHKIVGVVDQKVWREQLAPLYQQL  169 (176)
T ss_dssp             TTCHHHHHHTCCSSCEEEEECT-TCBEEEEEESCCCHHHHHHHTHHHHHHH
T ss_pred             CcchHHHHcCCCCCCeEEEECC-CCeEEEEEcCCCCHHHHHHHHHHHHHHH
Confidence            1235667788889999999997 6999999999999999999888887653

>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0

Probab=98.09  E-value=1.9e-05  Score=64.04  Aligned_cols=96  Identities=13%  Similarity=0.082  Sum_probs=70.9

Q ss_pred             ccccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHH--------hccCcEEEEEeecCCCCCCCChHH
Q 036413          130 MFNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQT--------IRASNFIFWQVYDDDDDDDDDSEC  201 (346)
Q Consensus       130 ~~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~--------i~~~nFVfw~~~~~~~~~~~~~eg  201 (346)
                      +-..+|++.+.   +.+|++||+++++||..|+.+..      .+.++        .+ .++.|..++.+      .  .
T Consensus        20 l~~~~f~~~~~---~~~~~vlv~F~a~wC~~C~~~~p------~~~~la~~~~~~~~~-~~v~~~~vd~~------~--~   81 (127)
T 3h79_A           20 LTDETFDSIVM---DPEKDVFVLYYVPWSRHSVAAMR------LWDDLSMSQSQKRNH-LTFVAARIDGE------K--Y   81 (127)
T ss_dssp             CCTTTHHHHHT---CTTCEEEEEEECTTCHHHHHHHH------HHHHHHHHHHTSTTT-TTEEEEEEETT------T--C
T ss_pred             CChhhHHHHHh---CCCCCEEEEEECCccHHHHHHhH------HHHHHHHHHHhcccC-CCeEEEEEEcc------c--c
Confidence            34556877664   45899999999999999999853      33333        23 57999999887      3  3


Q ss_pred             HHHHhhcCCCCCceEEEEeCCCCceE--EEEeCCCChHHHHHHHHH
Q 036413          202 RKVCGYYKLDSLPVVLVIDPITGEKM--RKWCGMVDPVSLLEDLLS  245 (346)
Q Consensus       202 ~~~~~~y~~~~~P~i~iidp~tge~l--~~~~G~~~~~~~i~~L~~  245 (346)
                      ..++..|++..||++.++.+  |..+  ..+.|..+.+.+++.|.+
T Consensus        82 ~~l~~~~~v~~~Pt~~~~~~--g~~~~~~~~~G~~~~~~l~~~i~~  125 (127)
T 3h79_A           82 PDVIERMRVSGFPTMRYYTR--IDKQEPFEYSGQRYLSLVDSFVFQ  125 (127)
T ss_dssp             HHHHHHTTCCSSSEEEEECS--SCSSSCEECCSCCCHHHHHHHHHH
T ss_pred             HhHHHhcCCccCCEEEEEeC--CCCCCceEecCCccHHHHHHHHHh
Confidence            57899999999999999985  3332  467898887766665543

>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}

Probab=97.37  E-value=4.2e-07  Score=70.16  Aligned_cols=93  Identities=17%  Similarity=0.200  Sum_probs=70.3

Q ss_pred             HHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCCCCceEEEE
Q 036413          140 DVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVLVI  219 (346)
Q Consensus       140 ~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~i~ii  219 (346)
                      ..+.+.+|+++|++.++||..|+.+...+   +.+.+.+. .++.|..++.+        +...++..|++..+|++.++
T Consensus        13 ~~~~~~~~~~~v~f~~~~C~~C~~~~~~~---~~~~~~~~-~~~~~~~v~~~--------~~~~~~~~~~v~~~Pt~~~~   80 (106)
T 2yj7_A           13 QEVLKSDKPVLVDFWAPWCGPCRMIAPII---EELAKEYE-GKVKVVKVNVD--------ENPNTAAQYGIRSIPTLLLF   80 (106)
Confidence            34457789999999999999999996543   34444455 57788777666        23568889999999999999


Q ss_pred             eCCCCceEEEEeCCCChHHHHHHHHHH
Q 036413          220 DPITGEKMRKWCGMVDPVSLLEDLLSF  246 (346)
Q Consensus       220 dp~tge~l~~~~G~~~~~~~i~~L~~f  246 (346)
                        ..|+.+..+.|..+.+++.+.|.+.
T Consensus        81 --~~g~~~~~~~g~~~~~~l~~~l~~~  105 (106)
T 2yj7_A           81 --KNGQVVDRLVGAQPKEALKERIDKH  105 (106)
Confidence              3688888888987777776666543

>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1

Probab=98.08  E-value=3e-06  Score=69.18  Aligned_cols=97  Identities=14%  Similarity=0.173  Sum_probs=67.7

Q ss_pred             ccCHHHHHHHhhhcCcEEEEEecCCCCc--------------cccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCC
Q 036413          132 NGSFEKAKDVGSDENKWLLVNLQSPKEF--------------TSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDD  197 (346)
Q Consensus       132 ~gsf~~A~~~Ak~~~K~LlV~l~~~~~f--------------~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~  197 (346)
                      ..+|+++.   .+.+|.+||++.++||.              .|+.+...+   +.+.+-+. .++.|..++.+      
T Consensus        10 ~~~f~~~~---~~~~k~vlv~F~a~wC~~c~~l~~~~~~~~~~C~~~~p~~---~~l~~~~~-~~~~~~~vd~d------   76 (123)
T 1oaz_A           10 DDSFDTDV---LKADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPIL---DEIADEYQ-GKLTVAKLNID------   76 (123)
T ss_dssp             STTHHHHT---TSCSSEEEEEEECSSCSCBSSSTTSCCSCCCCCCTTHHHH---TTC--------CEEEEEETT------
T ss_pred             hhhHHHHH---HhCCCeEEEEEECCCCccccccccccccCCCCcHHHHHHH---HHHHHHhc-CCeEEEEEECC------
Confidence            34565443   57899999999999999              666664321   12333344 57899999888      


Q ss_pred             ChHHHHHHhhcCCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHH
Q 036413          198 DSECRKVCGYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLS  245 (346)
Q Consensus       198 ~~eg~~~~~~y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~  245 (346)
                      ..  ..++..|++..+|++.++  ..|+.+....|..+.+++.+.|.+
T Consensus        77 ~~--~~l~~~~~v~~~Pt~~~~--~~G~~~~~~~G~~~~~~l~~~l~~  120 (123)
T 1oaz_A           77 QN--PGTAPKYGIRGIPTLLLF--KNGEVAATKVGALSKGQLKEFLDA  120 (123)
T ss_dssp             SC--TTTGGGGTCCBSSEEEEE--ESSSEEEEEESCCCHHHHHHHHTT
T ss_pred             CC--HHHHHHcCCCccCEEEEE--ECCEEEEEEeCCCCHHHHHHHHHH
Confidence            22  358889999999999999  369999889998888776666543

>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0

Probab=98.08  E-value=1.7e-05  Score=66.25  Aligned_cols=102  Identities=15%  Similarity=0.117  Sum_probs=72.8

Q ss_pred             hhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhc-------------
Q 036413          142 GSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYY-------------  208 (346)
Q Consensus       142 Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y-------------  208 (346)
                      +.-.+|++||++.++||..|..+...+   ..+.+-+.+.++.+..++.+.    ......+++..+             
T Consensus        30 ~~~~gk~vlv~f~~~~C~~C~~~~~~l---~~l~~~~~~~~v~~v~v~~d~----~~~~~~~~~~~~~~~~~~~~~~~~~  102 (165)
T 3or5_A           30 ASLKGKAYIVNFFATWCPPCRSEIPDM---VQVQKTWASRGFTFVGIAVNE----QLPNVKNYMKTQGIIYPVMMATPEL  102 (165)
T ss_dssp             GGGTTCEEEEEEECTTSHHHHHHHHHH---HHHHHHHTTTTEEEEEEECSC----CHHHHHHHHHHHTCCSCEEECCHHH
T ss_pred             hHcCCCEEEEEEEcCcCHHHHHHHHHH---HHHHHHhccCCeEEEEEECCC----CHHHHHHHHHHcCCCCceEecCHHH
Confidence            334689999999999999999885443   223333332569999988772    022333443322             


Q ss_pred             ----------CCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHHcCC
Q 036413          209 ----------KLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMESGP  251 (346)
Q Consensus       209 ----------~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~~~~  251 (346)
                                ++..+|++.|||+ .|+.+..+.|..+++++.+.|...+....
T Consensus       103 ~~~~~~~~~~~i~~~P~~~lid~-~G~i~~~~~g~~~~~~l~~~l~~~l~~~~  154 (165)
T 3or5_A          103 IRAFNGYIDGGITGIPTSFVIDA-SGNVSGVIVGPRSKADFDRIVKMALGAKA  154 (165)
T ss_dssp             HHHHHTTSTTCSCSSSEEEEECT-TSBEEEEECSCCCHHHHHHHHHHHHC---
T ss_pred             HHHHhhhhccCCCCCCeEEEECC-CCcEEEEEcCCCCHHHHHHHHHHHHhhhc
Confidence                      6889999999996 69999999999999999999999886553

>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A

Probab=98.05  E-value=1.9e-05  Score=62.18  Aligned_cols=99  Identities=12%  Similarity=0.098  Sum_probs=71.3

Q ss_pred             cccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhc-cCcEEEEEeecCCCCCCCChHHHHHHhhcC
Q 036413          131 FNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIR-ASNFIFWQVYDDDDDDDDDSECRKVCGYYK  209 (346)
Q Consensus       131 ~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~-~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~  209 (346)
                      -..+|++++..+  .+|.+||++.++||..|+.+...      +.++.+ -.++.|..++.+      . +...++..|+
T Consensus        11 ~~~~~~~~~~~~--~~~~vlv~f~a~wC~~C~~~~~~------l~~~~~~~~~v~~~~vd~~------~-~~~~~~~~~~   75 (111)
T 2pu9_C           11 NKDTFWPIVKAA--GDKPVVLDMFTQWCGPSKAMAPK------YEKLAEEYLDVIFLKLDCN------Q-ENKTLAKELG   75 (111)
T ss_dssp             CTTTHHHHHTTC--TTSCEEEEEECTTCHHHHHHHHH------HHHHHHHCTTSEEEEEECS------S-TTHHHHHHHC
T ss_pred             chHHHHHHHHhc--CCCEEEEEEECCcCHhHHHHCHH------HHHHHHHCCCeEEEEEecC------c-chHHHHHHcC
Confidence            355777777432  57999999999999999998643      344333 024788888776      2 2357889999


Q ss_pred             CCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHH
Q 036413          210 LDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFM  247 (346)
Q Consensus       210 ~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl  247 (346)
                      +..+|++ ++++ .|+.+..+.|. +++++.+.|.+++
T Consensus        76 v~~~Pt~-~~~~-~G~~~~~~~G~-~~~~l~~~l~~~~  110 (111)
T 2pu9_C           76 IRVVPTF-KILK-ENSVVGEVTGA-KYDKLLEAIQAAR  110 (111)
T ss_dssp             CSBSSEE-EEES-SSSEEEEEESS-CHHHHHHHHHHHH
T ss_pred             CCeeeEE-EEEe-CCcEEEEEcCC-CHHHHHHHHHHhh
Confidence            9999995 4553 69988888997 4777776666553

>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}

Probab=98.04  E-value=2.2e-05  Score=65.44  Aligned_cols=102  Identities=15%  Similarity=0.041  Sum_probs=72.7

Q ss_pred             HHhhhcCcEEEEEecCCCCccccc-cccccCCCHHHHHHh---ccCcEEEEEeecCCCCC--CCChH-------------
Q 036413          140 DVGSDENKWLLVNLQSPKEFTSHT-LNRDTWADEAVSQTI---RASNFIFWQVYDDDDDD--DDDSE-------------  200 (346)
Q Consensus       140 ~~Ak~~~K~LlV~l~~~~~f~c~~-lnRdvw~~~~V~~~i---~~~nFVfw~~~~~~~~~--~~~~e-------------  200 (346)
                      ..+.-.+|++||++..+||..|.. +-      +.+.++.   .+.++.++.++.+. +.  +++.+             
T Consensus        24 ~l~~~~gk~vlv~F~a~~C~~C~~e~~------~~l~~l~~~~~~~~v~~v~v~~~~-~~~~~~~~~~~~~~~~~~~~~~   96 (160)
T 3lor_A           24 SNEDLRGKVVVVEVFQMLCPGCVNHGV------PQAQKIHRMIDESQVQVIGLHSVF-EHHDVMTPEALKVFIDEFGIKF   96 (160)
T ss_dssp             CHHHHTTSEEEEEEECTTCHHHHHTHH------HHHHHHHHHSCTTTEEEEEEECCC-SCGGGSCHHHHHHHHHHTTCCS
T ss_pred             CHHHhCCCEEEEEEEcCCCcchhhhhh------HHHHHHHHHhCcCCcEEEEEeccc-cccccCCHHHHHHHHHHcCCCC
Confidence            334446899999999999999976 32      3333333   22468888887631 00  00111             


Q ss_pred             ------------HHHHHhhcCCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHHc
Q 036413          201 ------------CRKVCGYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMES  249 (346)
Q Consensus       201 ------------g~~~~~~y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~~  249 (346)
                                  ...++..|++..+|++.|||+ .|+.+..+.|..+++++.+.|.+.+..
T Consensus        97 ~~~~d~~~~~~~~~~~~~~~~v~~~P~~~lid~-~G~i~~~~~g~~~~~~l~~~i~~ll~~  156 (160)
T 3lor_A           97 PVAVDMPREGQRIPSTMKKYRLEGTPSIILADR-KGRIRQVQFGQVDDFVLGLLLGSLLSE  156 (160)
T ss_dssp             CEEEECCCTTCSSCHHHHHTTCCSSSEEEEECT-TSBEEEEEESCCCHHHHHHHHHHHHTC
T ss_pred             cEEECCccccchhhhHHHhcccCccceEEEECC-CCcEEEEecCcCCHHHHHHHHHHHHhc
Confidence                        112778899999999999997 699999999999999999999888865

>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}

Probab=98.03  E-value=9.9e-06  Score=66.26  Aligned_cols=98  Identities=13%  Similarity=0.086  Sum_probs=71.7

Q ss_pred             hhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChH-HHH-----------------
Q 036413          142 GSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSE-CRK-----------------  203 (346)
Q Consensus       142 Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~e-g~~-----------------  203 (346)
                      +.-.+|++||++.++||..|+.+...+-   .+.+-+.+.++.+..++.+.     +.+ ..+                 
T Consensus        27 ~~~~gk~vll~f~~~~C~~C~~~~~~l~---~l~~~~~~~~~~~v~v~~d~-----~~~~~~~~~~~~~~~~~~~~~d~~   98 (148)
T 3hcz_A           27 YDVQAKYTILFFWDSQCGHCQQETPKLY---DWWLKNRAKGIQVYAANIER-----KDEEWLKFIRSKKIGGWLNVRDSK   98 (148)
T ss_dssp             GGCCCSEEEEEEECGGGCTTCSHHHHHH---HHHHHHGGGTEEEEEEECCS-----SSHHHHHHHHHHTCTTSEEEECTT
T ss_pred             HHcCCCEEEEEEECCCCccHHHHHHHHH---HHHHHhccCCEEEEEEEecC-----CHHHHHHHHHHcCCCCceEEeccc
Confidence            3346899999999999999988753221   12222332469999988872     222 111                 


Q ss_pred             ----HHhhcCCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHH
Q 036413          204 ----VCGYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFME  248 (346)
Q Consensus       204 ----~~~~y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~  248 (346)
                          ++..|++..+|++.|||+ .|+.+..+.|..+.+++++.|.+.+.
T Consensus        99 ~~~~~~~~~~i~~~P~~~lid~-~G~i~~~~~g~~~~~~~l~~l~~~l~  146 (148)
T 3hcz_A           99 NHTDFKITYDIYATPVLYVLDK-NKVIIAKRIGYENLDDFLVQYEKSLK  146 (148)
T ss_dssp             CCCCHHHHHCCCSSCEEEEECT-TCBEEEESCCGGGHHHHHHHHHHHHH
T ss_pred             cchhHHHhcCcCCCCEEEEECC-CCcEEEecCCHHHHHHHHHHHHHHhc
Confidence                778899999999999997 69999888888788888888877654

>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}

Probab=98.03  E-value=1.3e-05  Score=65.53  Aligned_cols=92  Identities=17%  Similarity=0.273  Sum_probs=68.7

Q ss_pred             hcCcEEEEEecCCCCccccccccccCCCHHHHHHh-ccCcEEEEEeecCCCCCCCChH----------------------
Q 036413          144 DENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTI-RASNFIFWQVYDDDDDDDDDSE----------------------  200 (346)
Q Consensus       144 ~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i-~~~nFVfw~~~~~~~~~~~~~e----------------------  200 (346)
                      -.+|++||++.++||..|+.+...+   ..+.+-+ .+.++.++.++.+      ...                      
T Consensus        31 ~~gk~vll~F~~~~C~~C~~~~~~l---~~l~~~~~~~~~~~~v~v~~d------~~~~~~~~~~~~~~~~~~~~~d~~~  101 (148)
T 3fkf_A           31 FRNRYLLLNFWASWCDPQPEANAEL---KRLNKEYKKNKNFAMLGISLD------IDREAWETAIKKDTLSWDQVCDFTG  101 (148)
T ss_dssp             TTTSEEEEEEECGGGCCCHHHHHHH---HHHHHHTTTCTTEEEEEEECC------SCHHHHHHHHHHTTCCSEEECCSCG
T ss_pred             cCCcEEEEEEECCCCHHHHHHhHHH---HHHHHHhcCCCCeEEEEEECC------CCHHHHHHHHHHcCCCceEEEccCC
Confidence            3789999999999999999885433   2233333 3145999999888      433                      


Q ss_pred             -HHHHHhhcCCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHH
Q 036413          201 -CRKVCGYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFME  248 (346)
Q Consensus       201 -g~~~~~~y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~  248 (346)
                       ...++..|++..+|++.|||+ .|+.+..+.   +.+++.+.|.+.+.
T Consensus       102 ~~~~~~~~~~v~~~P~~~lid~-~G~i~~~~~---~~~~l~~~l~~ll~  146 (148)
T 3fkf_A          102 LSSETAKQYAILTLPTNILLSP-TGKILARDI---QGEALTGKLKELLK  146 (148)
T ss_dssp             GGCHHHHHTTCCSSSEEEEECT-TSBEEEESC---CHHHHHHHHHHHC-
T ss_pred             cchHHHHhcCCCCcCEEEEECC-CCeEEEecC---CHHHHHHHHHHHHc
Confidence             457889999999999999997 688776654   67778777777653

>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1

Probab=98.01  E-value=1.9e-05  Score=63.09  Aligned_cols=89  Identities=8%  Similarity=0.075  Sum_probs=62.8

Q ss_pred             hhcCcEEEEEecCCCCccccccccccCCCHHHHHHhcc--CcEEEEEeecCCCCCCCChHHHHHHhhcCCCCCceEEEEe
Q 036413          143 SDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRA--SNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVLVID  220 (346)
Q Consensus       143 k~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~--~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~i~iid  220 (346)
                      .+.+|.++|++.++||..|+.+.      +.+.++.++  ..+++.-++..    .+..+...++..|++..+|++.++.
T Consensus        26 ~~~~~~~~v~f~a~wC~~C~~~~------p~l~~~~~~~~~~v~~~~~~~~----~~~~~~~~~~~~~~i~~~Pt~~~~~   95 (118)
T 1zma_A           26 LDKKETATFFIGRKTCPYCRKFA------GTLSGVVAETKAHIYFINSEEP----SQLNDLQAFRSRYGIPTVPGFVHIT   95 (118)
T ss_dssp             HHTTCCEEEEEECTTCHHHHHHH------HHHHHHHHHHCCCCEEEETTCG----GGHHHHHHHHHHHTCCSSCEEEEEE
T ss_pred             HhCCCeEEEEEECCCCccHHHHH------HHHHHHHHhcCCeEEEEECCCc----CcHHHHHHHHHHcCCCCCCeEEEEE
Confidence            34678999999999999999985      334444430  34444433221    0023456788999999999999996


Q ss_pred             CCCCceEEEEeCCCChHHHHHHH
Q 036413          221 PITGEKMRKWCGMVDPVSLLEDL  243 (346)
Q Consensus       221 p~tge~l~~~~G~~~~~~~i~~L  243 (346)
                        .|+.+.+..|..++++|.+.|
T Consensus        96 --~G~~~~~~~G~~~~~~l~~~l  116 (118)
T 1zma_A           96 --DGQINVRCDSSMSAQEIKDFA  116 (118)
T ss_dssp             --TTEEEEECCTTCCHHHHHHHH
T ss_pred             --CCEEEEEecCCCCHHHHHHHh
Confidence              688888889988887665544

>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A

Probab=98.00  E-value=6.5e-06  Score=69.63  Aligned_cols=97  Identities=15%  Similarity=0.095  Sum_probs=74.2

Q ss_pred             hcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCC----------------ChHHHHHHhh
Q 036413          144 DENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDD----------------DSECRKVCGY  207 (346)
Q Consensus       144 ~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~----------------~~eg~~~~~~  207 (346)
                      ..+|++||++.++||..|+.+.      +.+.++.+ +++.++.++.+. +.+.                ......++..
T Consensus        49 ~~gk~vll~F~a~~C~~C~~~~------~~l~~l~~-~~v~vv~v~~~~-~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  120 (168)
T 2b1k_A           49 TQGKPVLLNVWATWCPTCRAEH------QYLNQLSA-QGIRVVGMNYKD-DRQKAISWLKELGNPYALSLFDGDGMLGLD  120 (168)
T ss_dssp             CCSSCEEEEEECTTCHHHHHHH------HHHHHHHH-TTCCEEEEEESC-CHHHHHHHHHHHCCCCSEEEEETTCHHHHH
T ss_pred             cCCCEEEEEEECCCCHHHHHHH------HHHHHHHH-CCCEEEEEECCC-ChHHHHHHHHHcCCCCceeeECcchHHHHH
Confidence            4689999999999999998874      56777777 688888887551 0000                0112356778


Q ss_pred             cCCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHHc
Q 036413          208 YKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMES  249 (346)
Q Consensus       208 y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~~  249 (346)
                      |++..+|++.|||+ .|+.+..+.|..+++.+.+.|.+.++.
T Consensus       121 ~~v~~~P~~~lid~-~G~i~~~~~g~~~~~~l~~~l~~~l~~  161 (168)
T 2b1k_A          121 LGVYGAPETFLIDG-NGIIRYRHAGDLNPRVWEEEIKPLWEK  161 (168)
T ss_dssp             HTCCSSSEEEEECT-TSBEEEEEESCCCHHHHHHTTHHHHHH
T ss_pred             cCccccCEEEEECC-CCeEEEEEeCCCCHHHHHHHHHHHHHH
Confidence            89999999999996 699998999999999888888877754

>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}

Probab=97.99  E-value=1.6e-05  Score=65.83  Aligned_cols=104  Identities=15%  Similarity=0.143  Sum_probs=73.8

Q ss_pred             hcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCC---------------ChHHHHHHhhc
Q 036413          144 DENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDD---------------DSECRKVCGYY  208 (346)
Q Consensus       144 ~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~---------------~~eg~~~~~~y  208 (346)
                      -.+|++||++.++||..|+.+...+   ..+.+-+.+.++.++.++.+.+..+.               ......++..|
T Consensus        26 ~~gk~~lv~f~~~~C~~C~~~~~~l---~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  102 (153)
T 2l5o_A           26 LQGKVTLINFWFPSCPGCVSEMPKI---IKTANDYKNKNFQVLAVAQPIDPIESVRQYVKDYGLPFTVMYDADKAVGQAF  102 (153)
T ss_dssp             HTTCEEEEEEECTTCTTHHHHHHHH---HHHHHHGGGTTEEEEEEECTTSCHHHHHHHHHHTTCCSEEEECSSCHHHHHH
T ss_pred             hCCCEEEEEEECCCCccHHHHHHHH---HHHHHHhccCCeEEEEEecCCCCHHHHHHHHHHcCCCceEEcCchHHHHHHc
Confidence            3689999999999999998875432   12222233246888877643100000               01134577889


Q ss_pred             CCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHHcCC
Q 036413          209 KLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMESGP  251 (346)
Q Consensus       209 ~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~~~~  251 (346)
                      ++..+|++.|||+ .|+.+..+.|..+++++.+.|...+....
T Consensus       103 ~i~~~P~~~lid~-~G~i~~~~~g~~~~~~l~~~l~~ll~~~~  144 (153)
T 2l5o_A          103 GTQVYPTSVLIGK-KGEILKTYVGEPDFGKLYQEIDTAWRNSD  144 (153)
T ss_dssp             TCCSSSEEEEECS-SSCCCEEEESSCCHHHHHHHHHHHHHCCS
T ss_pred             CCCccCeEEEECC-CCcEEEEEcCCCCHHHHHHHHHHHHHhhh
Confidence            9999999999997 69988889999999999999999887653

>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}

Probab=97.98  E-value=4.4e-05  Score=62.98  Aligned_cols=103  Identities=12%  Similarity=0.159  Sum_probs=71.6

Q ss_pred             HHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChH-H----------------
Q 036413          139 KDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSE-C----------------  201 (346)
Q Consensus       139 ~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~e-g----------------  201 (346)
                      ...+.-.+|++||++.++||..|..+...+   ..+.+-+.+.++.+..++.+.     ..+ .                
T Consensus        21 ~~l~~~~gk~vll~f~~~~C~~C~~~~~~l---~~l~~~~~~~~~~~v~v~~d~-----~~~~~~~~~~~~~~~~~~~~d   92 (152)
T 3gl3_A           21 VKLSDKTGSVVYLDFWASWCGPCRQSFPWM---NQMQAKYKAKGFQVVAVNLDA-----KTGDAMKFLAQVPAEFTVAFD   92 (152)
T ss_dssp             EEGGGGTTSEEEEEEECTTCTHHHHHHHHH---HHHHHHHGGGTEEEEEEECCS-----SHHHHHHHHHHSCCCSEEEEC
T ss_pred             EeHHHhCCCEEEEEEECCcCHHHHHHHHHH---HHHHHHhhcCCeEEEEEECCC-----CHHHHHHHHHHcCCCCceeEC
Confidence            344555789999999999999998875443   223333332568888888772     221 1                


Q ss_pred             --HHHHhhcCCCCCceEEEEeCCCCceEEEEeCCCC--hHHHHHHHHHHHHcC
Q 036413          202 --RKVCGYYKLDSLPVVLVIDPITGEKMRKWCGMVD--PVSLLEDLLSFMESG  250 (346)
Q Consensus       202 --~~~~~~y~~~~~P~i~iidp~tge~l~~~~G~~~--~~~~i~~L~~fl~~~  250 (346)
                        ..++..|++..+|++.|||+ .|+.+..+.|...  .+++.+.|.+.+...
T Consensus        93 ~~~~~~~~~~v~~~P~~~lid~-~G~i~~~~~g~~~~~~~~l~~~i~~~~~~~  144 (152)
T 3gl3_A           93 PKGQTPRLYGVKGMPTSFLIDR-NGKVLLQHVGFRPADKEALEQQILAALGGN  144 (152)
T ss_dssp             TTCHHHHHTTCCSSSEEEEECT-TSBEEEEEESCCTTTHHHHHHHHHHHTC--
T ss_pred             CcchhHHHcCCCCCCeEEEECC-CCCEEEEEccCCCcCHHHHHHHHHHHHccc
Confidence              15678899999999999997 6999999999654  356666666655443

>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix}

Probab=97.98  E-value=1.5e-05  Score=65.70  Aligned_cols=106  Identities=10%  Similarity=-0.006  Sum_probs=75.0

Q ss_pred             ccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCC-CChHHHHHHhhcCC
Q 036413          132 NGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDD-DDSECRKVCGYYKL  210 (346)
Q Consensus       132 ~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~-~~~eg~~~~~~y~~  210 (346)
                      ..+|++++..      +++|++.++||..|+.+.      +.+.++.++-++.|..++.+..... ...+...++..|++
T Consensus        23 ~~~~~~~~~~------~vlv~F~a~wC~~C~~~~------p~l~~l~~~~~v~~~~vd~~~~~~~~~~d~~~~l~~~~~v   90 (135)
T 3emx_A           23 PEEFRQLLQG------DAILAVYSKTCPHCHRDW------PQLIQASKEVDVPIVMFIWGSLIGERELSAARLEMNKAGV   90 (135)
T ss_dssp             HHHHHHHHTS------SEEEEEEETTCHHHHHHH------HHHHHHHTTCCSCEEEEEECTTCCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHhCC------cEEEEEECCcCHhhhHhC------hhHHHHHHHCCCEEEEEECCCchhhhhhhhhHHHHHHcCC
Confidence            4456655532      999999999999999984      6667777622477777777510000 00567788999999


Q ss_pred             CCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHHcCC
Q 036413          211 DSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMESGP  251 (346)
Q Consensus       211 ~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~~~~  251 (346)
                      ..+|++++++  .|+.+..+.|..+.+.+...+.+.++...
T Consensus        91 ~~~Pt~~~~~--~G~~v~~~~G~~~~~~~~~~i~~~~~~~~  129 (135)
T 3emx_A           91 EGTPTLVFYK--EGRIVDKLVGATPWSLKVEKAREIYGGEG  129 (135)
T ss_dssp             CSSSEEEEEE--TTEEEEEEESCCCHHHHHHHHHHHC----
T ss_pred             ceeCeEEEEc--CCEEEEEEeCCCCHHHHHHHHHHHhCCCc
Confidence            9999999888  69999999998888777777776665543

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}

Probab=97.97  E-value=3.5e-05  Score=69.81  Aligned_cols=117  Identities=16%  Similarity=0.226  Sum_probs=85.4

Q ss_pred             HhhcCCCccc--ccccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccC---cEEEEEeecCCCC
Q 036413          120 ASLYRPPVDL--MFNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRAS---NFIFWQVYDDDDD  194 (346)
Q Consensus       120 ~~lf~PP~~l--~~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~---nFVfw~~~~~~~~  194 (346)
                      +.||.+..++  +-..+|++.+   .+.+|.++|++.++||..|+.+...+   +.+.+-+. .   ++.|..++.+   
T Consensus         5 ~~l~~~~~~v~~l~~~~f~~~i---~~~~~~vlv~F~a~wC~~C~~~~p~~---~~l~~~~~-~~~~~v~~~~vd~~---   74 (244)
T 3q6o_A            5 SALYSPSDPLTLLQADTVRGAV---LGSRSAWAVEFFASWCGHCIAFAPTW---XALAEDVK-AWRPALYLAALDCA---   74 (244)
T ss_dssp             -CCSCTTSSSEEECTTTHHHHH---SSCSSEEEEEEECTTCHHHHHHHHHH---HHHHHHTG-GGTTTEEEEEEETT---
T ss_pred             cCCCCCCCCceeCChhhHHHHH---hhCCCeEEEEEECCcCHHHHHHHHHH---HHHHHHHH-hccCcEEEEEEeCC---
Confidence            3456543333  3456677665   34569999999999999999995322   33444444 4   7999999997   


Q ss_pred             CCCChHHHHHHhhcCCCCCceEEEEeCC--C--CceEEEEeCCCChHHHHHHHHHHHHcCC
Q 036413          195 DDDDSECRKVCGYYKLDSLPVVLVIDPI--T--GEKMRKWCGMVDPVSLLEDLLSFMESGP  251 (346)
Q Consensus       195 ~~~~~eg~~~~~~y~~~~~P~i~iidp~--t--ge~l~~~~G~~~~~~~i~~L~~fl~~~~  251 (346)
                         ..+...++..|++..+|++.++++-  .  |..+ ...| .+++.+.+.|.+++....
T Consensus        75 ---~~~~~~l~~~~~v~~~Pt~~~~~~g~~~~~g~~~-~~~g-~~~~~l~~~i~~~l~~~~  130 (244)
T 3q6o_A           75 ---EETNSAVCRDFNIPGFPTVRFFXAFTXNGSGAVF-PVAG-ADVQTLRERLIDALESHH  130 (244)
T ss_dssp             ---STTTHHHHHHTTCCSSSEEEEECTTCCSSSCEEC-CCTT-CCHHHHHHHHHHHHHTCT
T ss_pred             ---chhhHHHHHHcCCCccCEEEEEeCCCcCCCCeeE-ecCC-CCHHHHHHHHHHHHHhcc
Confidence               6667889999999999999999962  1  2233 4566 589999999999998765

>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1

Probab=97.96  E-value=3.2e-05  Score=62.03  Aligned_cols=99  Identities=10%  Similarity=0.122  Sum_probs=71.9

Q ss_pred             ccccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhcc-CcEEEEEeecCCCCCCCChHHHHHHhhc
Q 036413          130 MFNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRA-SNFIFWQVYDDDDDDDDDSECRKVCGYY  208 (346)
Q Consensus       130 ~~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~-~nFVfw~~~~~~~~~~~~~eg~~~~~~y  208 (346)
                      +-..+|.+.+..  ..+|.++|++.++||..|+.+...      +.++.++ .++.|..++.+      . +...++..|
T Consensus        23 l~~~~~~~~~~~--~~~~~~vv~f~a~wC~~C~~~~~~------l~~~~~~~~~~~~~~vd~~------~-~~~~~~~~~   87 (124)
T 1faa_A           23 VNKDTFWPIVKA--AGDKPVVLDMFTQWCGPCKAMAPK------YEKLAEEYLDVIFLKLDCN------Q-ENKTLAKEL   87 (124)
T ss_dssp             ECTTTHHHHHHH--TTTSCEEEEEECTTCHHHHHHHHH------HHHHHHHCTTSEEEEEECS------S-TTHHHHHHH
T ss_pred             ecchhHHHHHHh--cCCCEEEEEEECCcCHhHHHHhHH------HHHHHHHCCCCEEEEEecC------c-chHHHHHHc
Confidence            345678887764  468999999999999999998643      3444330 24788888776      2 346788999


Q ss_pred             CCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHH
Q 036413          209 KLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSF  246 (346)
Q Consensus       209 ~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~f  246 (346)
                      ++..+|++.+..  .|+.+..+.|.. ++++.+.|.+.
T Consensus        88 ~v~~~Pt~~~~~--~G~~~~~~~G~~-~~~l~~~i~~~  122 (124)
T 1faa_A           88 GIRVVPTFKILK--ENSVVGEVTGAK-YDKLLEAIQAA  122 (124)
T ss_dssp             CCSSSSEEEEEE--TTEEEEEEESSC-HHHHHHHHHHH
T ss_pred             CCCeeeEEEEEe--CCcEEEEEcCCC-HHHHHHHHHHh
Confidence            999999966653  699888889965 77666666554

>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum}

Probab=97.96  E-value=3.9e-05  Score=65.88  Aligned_cols=100  Identities=12%  Similarity=0.139  Sum_probs=70.5

Q ss_pred             hhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcE------EEEEeecCCCCCCCChHHHHHHhhc--------
Q 036413          143 SDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNF------IFWQVYDDDDDDDDDSECRKVCGYY--------  208 (346)
Q Consensus       143 k~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nF------Vfw~~~~~~~~~~~~~eg~~~~~~y--------  208 (346)
                      .-++|++||++..+||..|+.+...+   ..+.+-+++.++      .|+.++.+.   +......+++..|        
T Consensus        56 ~~~gk~vlv~F~a~~C~~C~~~~~~l---~~l~~~~~~~~~~~~~~v~~v~v~~d~---~~~~~~~~~~~~~~~~~~~~~  129 (183)
T 3lwa_A           56 DFENQVVILNAWGQWCAPCRSESDDL---QIIHEELQAAGNGDTPGGTVLGINVRD---YSRDIAQDFVTDNGLDYPSIY  129 (183)
T ss_dssp             GGTTSEEEEEEECTTCHHHHHHHHHH---HHHHHHHHHCC---CCSEEEEEEECSC---CCHHHHHHHHHHTTCCSCEEE
T ss_pred             HhCCCEEEEEEECCcCHhHHHHHHHH---HHHHHHHHhcCCCccCCcEEEEEECCC---CCHHHHHHHHHHcCCCccEEE
Confidence            34689999999999999998775433   122222331447      888888871   0123344554433        


Q ss_pred             -------------CCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHHc
Q 036413          209 -------------KLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMES  249 (346)
Q Consensus       209 -------------~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~~  249 (346)
                                   ++..+|++.|||+ .|+.+..+.|..+++++.+.|.+.+.+
T Consensus       130 d~~~~~~~~~~~~~v~~~P~~~lid~-~G~i~~~~~g~~~~~~l~~~l~~ll~~  182 (183)
T 3lwa_A          130 DPPFMTAASLGGVPASVIPTTIVLDK-QHRPAAVFLREVTSKDVLDVALPLVDE  182 (183)
T ss_dssp             CTTCGGGGGTTTCCTTCCSEEEEECT-TSCEEEEECSCCCHHHHHHHHHHHHHC
T ss_pred             CCcchHHHHhccCCCCCCCeEEEECC-CCcEEEEEcCCCCHHHHHHHHHHHHhc
Confidence                         4678999999997 699999999999999999999887753

>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=97.94  E-value=1.5e-05  Score=65.91  Aligned_cols=84  Identities=15%  Similarity=0.307  Sum_probs=63.0

Q ss_pred             cccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhcc-CcEEEEEeecCCCCCCCChHHHHHHhhcC
Q 036413          131 FNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRA-SNFIFWQVYDDDDDDDDDSECRKVCGYYK  209 (346)
Q Consensus       131 ~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~-~nFVfw~~~~~~~~~~~~~eg~~~~~~y~  209 (346)
                      -..+|.+++..+ ..+|++||++.++||..|+.|.      +.+.++.++ .++.|..++.+      ..     ...|+
T Consensus        16 ~~~~~~~~v~~~-~~~~~vvv~f~a~wC~~C~~~~------p~l~~la~~~~~v~~~~vd~~------~~-----~~~~~   77 (135)
T 2dbc_A           16 SGNQYVNEVTNA-EKDLWVVIHLYRSSVPMCLVVN------QHLSVLARKFPETKFVKAIVN------SC-----IEHYH   77 (135)
T ss_dssp             CHHHHHHHTTTC-CSSCEEEEEECCTTCHHHHHHH------HHHHHHHHHCSSEEEEEECCS------SS-----CSSCC
T ss_pred             CHHHHHHHHHhc-CCCCEEEEEEECCCChHHHHHH------HHHHHHHHHCCCcEEEEEEhh------cC-----cccCC
Confidence            344566666554 3468999999999999999995      444555440 25788888887      22     16899


Q ss_pred             CCCCceEEEEeCCCCceEEEEeCCC
Q 036413          210 LDSLPVVLVIDPITGEKMRKWCGMV  234 (346)
Q Consensus       210 ~~~~P~i~iidp~tge~l~~~~G~~  234 (346)
                      +..+|++.++.  .|+.+.++.|..
T Consensus        78 i~~~Pt~~~~~--~G~~v~~~~G~~  100 (135)
T 2dbc_A           78 DNCLPTIFVYK--NGQIEGKFIGII  100 (135)
T ss_dssp             SSCCSEEEEES--SSSCSEEEESTT
T ss_pred             CCCCCEEEEEE--CCEEEEEEEeEE
Confidence            99999999996  699998888865

>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}

Probab=97.92  E-value=6.6e-05  Score=62.35  Aligned_cols=95  Identities=17%  Similarity=0.253  Sum_probs=69.0

Q ss_pred             hcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChH----------------------H
Q 036413          144 DENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSE----------------------C  201 (346)
Q Consensus       144 ~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~e----------------------g  201 (346)
                      -.+|++||++.++||..|..+...+   ..+.+-+.+.++.++.++.+.     +.+                      .
T Consensus        27 ~~gk~vll~F~a~~C~~C~~~~~~l---~~l~~~~~~~~~~vv~v~~d~-----~~~~~~~~~~~~~~~~~~~~d~~~~~   98 (152)
T 2lrn_A           27 FKGKYVLVDFWFAGCSWCRKETPYL---LKTYNAFKDKGFTIYGVSTDR-----REEDWKKAIEEDKSYWNQVLLQKDDV   98 (152)
T ss_dssp             GTTSEEEEEEECTTCTTHHHHHHHH---HHHHHHHTTTTEEEEEEECCS-----CHHHHHHHHHHHTCCSEEEEECHHHH
T ss_pred             cCCCEEEEEEECCCChhHHHHHHHH---HHHHHHhccCCeEEEEEEccC-----CHHHHHHHHHHhCCCCeEEecccchh
Confidence            3689999999999999998874332   122332332569999998882     222                      4


Q ss_pred             HHHHhhcCCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHHcC
Q 036413          202 RKVCGYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMESG  250 (346)
Q Consensus       202 ~~~~~~y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~~~  250 (346)
                      ..++..|++..+|++.|||+ .|+.+..+   ++++++.+.|.+.+...
T Consensus        99 ~~~~~~~~v~~~P~~~lid~-~G~i~~~~---~~~~~l~~~l~~l~~~~  143 (152)
T 2lrn_A           99 KDVLESYCIVGFPHIILVDP-EGKIVAKE---LRGDDLYNTVEKFVNGA  143 (152)
T ss_dssp             HHHHHHTTCCSSCEEEEECT-TSEEEEEC---CCTTHHHHHHHHHHTSS
T ss_pred             HHHHHHhCCCcCCeEEEECC-CCeEEEee---CCHHHHHHHHHHHHhhc
Confidence            67889999999999999997 68887765   35667777777776554

>1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A

Probab=97.92  E-value=4.2e-05  Score=64.05  Aligned_cols=100  Identities=8%  Similarity=0.118  Sum_probs=73.5

Q ss_pred             CHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCCCC
Q 036413          134 SFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSL  213 (346)
Q Consensus       134 sf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~  213 (346)
                      +|++++..  ..+|++||++.++||..|+.+...+   +.+.+-.. .++.|..+++++      .  ..++..|++..+
T Consensus        13 ~~~~~v~~--~~~k~vlv~F~a~wC~~C~~~~p~l---~~l~~~~~-~~v~~~~vd~d~------~--~~~~~~~~i~~~   78 (142)
T 1qgv_A           13 QVDQAILS--EEDRVVVIRFGHDWDPTCMKMDEVL---YSIAEKVK-NFAVIYLVDITE------V--PDFNKMYELYDP   78 (142)
T ss_dssp             HHHHHHHT--CSSSEEEEEEECTTSHHHHHHHHHH---HHHHHHHT-TTEEEEEEETTT------C--CTTTTSSCSCSS
T ss_pred             HHHHHHHh--cCCCEEEEEEECCCCHHHHHHHHHH---HHHHHHhC-CCeEEEEEcccc------C--HHHHHHcCCCCC
Confidence            34444432  2589999999999999999996443   23444445 679999998882      2  347889999999


Q ss_pred             ceEEEEeCCCCceEE---------EEeCCCC-hHHHHHHHHHHHHc
Q 036413          214 PVVLVIDPITGEKMR---------KWCGMVD-PVSLLEDLLSFMES  249 (346)
Q Consensus       214 P~i~iidp~tge~l~---------~~~G~~~-~~~~i~~L~~fl~~  249 (346)
                      |++.++.  .|+.+.         .+.|.++ .++|++.|...+..
T Consensus        79 Pt~~~~~--~G~~v~~~~g~~~~~~~~g~~~~~~~l~~~i~~~~~~  122 (142)
T 1qgv_A           79 CTVMFFF--RNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETVYRG  122 (142)
T ss_dssp             CEEEEEE--TTEEEEEECC------CCSCCSCHHHHHHHHHHHHHH
T ss_pred             CEEEEEE--CCcEEEEecCCCCcceeeeecCcHHHHHHHHHHHHHH
Confidence            9999996  588775         3556664 88888888887764

>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.90  E-value=2.2e-05  Score=64.53  Aligned_cols=93  Identities=12%  Similarity=0.137  Sum_probs=69.2

Q ss_pred             cccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCC
Q 036413          131 FNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKL  210 (346)
Q Consensus       131 ~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~  210 (346)
                      -..+|++++  ++.++|++||++.++||..|+.+...+   ..+.+-.+..++.|..++.+      .  ...++..|++
T Consensus        13 ~~~~f~~~~--~~~~~~~vlv~f~a~wC~~C~~~~p~~---~~l~~~~~~~~v~~~~vd~~------~--~~~~~~~~~v   79 (137)
T 2dj0_A           13 NDKTIDEEL--ERDKRVTWIVEFFANWSNDCQSFAPIY---ADLSLKYNCTGLNFGKVDVG------R--YTDVSTRYKV   79 (137)
T ss_dssp             CTTHHHHHH--HHSTTSCEEEEECCTTCSTTTTTHHHH---HHHHHHHCSSSCEEEECCTT------T--CHHHHHHTTC
T ss_pred             cHhhHHHHH--hcCCCCEEEEEEECCCCHHHHHHHHHH---HHHHHHhCCCCeEEEEEeCc------c--CHHHHHHccC
Confidence            356788887  455578999999999999999996433   23333344138999998877      2  2458889999


Q ss_pred             C------CCceEEEEeCCCCceEEEEeCCCChHH
Q 036413          211 D------SLPVVLVIDPITGEKMRKWCGMVDPVS  238 (346)
Q Consensus       211 ~------~~P~i~iidp~tge~l~~~~G~~~~~~  238 (346)
                      .      .+|++.++.  .|+.+....|..+.+.
T Consensus        80 ~~~~~~~~~Pt~~~~~--~G~~~~~~~G~~~~~~  111 (137)
T 2dj0_A           80 STSPLTKQLPTLILFQ--GGKEAMRRPQIDKKGR  111 (137)
T ss_dssp             CCCSSSSCSSEEEEES--SSSEEEEESCBCSSSC
T ss_pred             cccCCcCCCCEEEEEE--CCEEEEEecCcCchHH
Confidence            8      999999994  6998888888765543

>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}

Probab=97.90  E-value=2.7e-05  Score=64.79  Aligned_cols=103  Identities=10%  Similarity=0.085  Sum_probs=73.6

Q ss_pred             HHhhhcCcEEEEEecCCCCcccccc-ccccCCCHHHHHHhc---cCcEEEEEeecCCCCC-CCC----------------
Q 036413          140 DVGSDENKWLLVNLQSPKEFTSHTL-NRDTWADEAVSQTIR---ASNFIFWQVYDDDDDD-DDD----------------  198 (346)
Q Consensus       140 ~~Ak~~~K~LlV~l~~~~~f~c~~l-nRdvw~~~~V~~~i~---~~nFVfw~~~~~~~~~-~~~----------------  198 (346)
                      ..+.-.+|++||++..+||..|... -      +.+.++.+   +.++.+..++.+.... .++                
T Consensus        22 ~l~~~~gk~vlv~f~a~wC~~C~~~~~------~~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (158)
T 3eyt_A           22 TLADLRGKVIVIEAFQMLCPGCVMHGI------PLAQKVRAAFPEDKVAVLGLHTVFEHHEAMTPISLKAFLHEYRIKFP   95 (158)
T ss_dssp             CTGGGTTSEEEEEEECTTCHHHHHTHH------HHHHHHHHHSCTTTEEEEEEECCCSCGGGSCHHHHHHHHHHTTCCSC
T ss_pred             CHHHhCCCEEEEEEECCcCcchhhhhh------HHHHHHHHHhCcCCEEEEEEEecccccccCCHHHHHHHHHHcCCCce
Confidence            3444468999999999999999873 2      33333332   2578888887531000 001                


Q ss_pred             ----hHHH----HHHhhcCCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHHc
Q 036413          199 ----SECR----KVCGYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMES  249 (346)
Q Consensus       199 ----~eg~----~~~~~y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~~  249 (346)
                          .++.    .++..|++..+|++.|||+ .|+.+..+.|..+.+++.+.|.+.+..
T Consensus        96 ~~~d~~~~~~~~~~~~~~~v~~~P~~~lid~-~G~i~~~~~g~~~~~~l~~~i~~ll~~  153 (158)
T 3eyt_A           96 VGVDQPGDGAMPRTMAAYQMRGTPSLLLIDK-AGDLRAHHFGDVSELLLGAEIATLLGE  153 (158)
T ss_dssp             EEEECCCSSSSCHHHHHTTCCSSSEEEEECT-TSEEEEEEESCCCHHHHHHHHHHHHTS
T ss_pred             EEEcCccchhhHHHHHHcCCCCCCEEEEECC-CCCEEEEEeCCCCHHHHHHHHHHHhcc
Confidence                1111    5788899999999999997 699999999999999999999888864

>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii}

Probab=97.88  E-value=3.7e-05  Score=66.61  Aligned_cols=99  Identities=8%  Similarity=0.094  Sum_probs=77.1

Q ss_pred             cCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhc--cCcEEEEEeecCCCCCCCChHHHHHHhhcCC
Q 036413          133 GSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIR--ASNFIFWQVYDDDDDDDDDSECRKVCGYYKL  210 (346)
Q Consensus       133 gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~--~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~  210 (346)
                      -+|++++..  +.+|+++|++..+||.+|.++.      |.+.++-.  ++..+|+.+|+++     .   ..++..|.+
T Consensus        30 ~~f~~~v~~--~~~k~VVVdF~A~WCgPCk~m~------PvleelA~e~~~~v~f~kVDVDe-----~---~e~a~~y~V   93 (160)
T 2av4_A           30 WAVDQAIVN--EDERLVCIRFGHDYDPDCMKMD------ELLYKVADDIKNFCVIYLVDITE-----V---PDFNTMYEL   93 (160)
T ss_dssp             HHHHHHHHH--CSSSEEEEEEECTTSHHHHHHH------HHHHHHHHHHTTTEEEEEEETTT-----C---CTTTTTTTC
T ss_pred             HHHHHHHHh--cCCCEEEEEEECCCChhHHHHH------HHHHHHHHHccCCcEEEEEECCC-----C---HHHHHHcCC
Confidence            457776632  5789999999999999999993      55555444  1468999999993     3   458999999


Q ss_pred             CCCceEEEEeCCCCceE--E-------EEeCCCC-hHHHHHHHHHHHHc
Q 036413          211 DSLPVVLVIDPITGEKM--R-------KWCGMVD-PVSLLEDLLSFMES  249 (346)
Q Consensus       211 ~~~P~i~iidp~tge~l--~-------~~~G~~~-~~~~i~~L~~fl~~  249 (346)
                      .+.|++.+.-  .|+.+  .       ++.|..+ .++|++.|..++..
T Consensus        94 ~siPT~~fFk--~G~~v~vd~Gtgd~~k~vGa~~~k~~l~~~ie~~~r~  140 (160)
T 2av4_A           94 YDPVSVMFFY--RNKHMMIDLGTGNNNKINWPMNNKQEFIDIVETIFRG  140 (160)
T ss_dssp             CSSEEEEEEE--TTEEEEEECSSSCCSCBCSCCCCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEEE--CCEEEEEecCCCCcCeEEeecCCHHHHHHHHHHHHHH
Confidence            9999998886  48877  4       6789876 88898888888744

>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15}

Probab=97.86  E-value=4.5e-05  Score=63.07  Aligned_cols=100  Identities=16%  Similarity=0.183  Sum_probs=70.9

Q ss_pred             hhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCC-hHH-------------------
Q 036413          142 GSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDD-SEC-------------------  201 (346)
Q Consensus       142 Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~-~eg-------------------  201 (346)
                      +.-.+|++||++.++||..|+.+-..+   ..+.+-+.+.++.++.++.+.     . .+.                   
T Consensus        24 ~~~~gk~vll~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~v~v~~d~-----~~~~~~~~~~~~~~~~~~~~~d~~   95 (154)
T 3kcm_A           24 SDLKGQVVIVNFWATWCPPCREEIPSM---MRLNAAMAGKPFRMLCVSIDE-----GGKVAVEEFFRKTGFTLPVLLDAD   95 (154)
T ss_dssp             GGGTTSEEEEEEECTTCHHHHHHHHHH---HHHHHHTTTSSEEEEEEECCT-----THHHHHHHHHHHHCCCCCEEECTT
T ss_pred             hhcCCCEEEEEEECCCCHHHHHHHHHH---HHHHHHhccCCeEEEEEEcCC-----cchHHHHHHHHHcCCCeeEEecCc
Confidence            444789999999999999999875443   233333332578888888882     1 221                   


Q ss_pred             HHHHhhcCCCCCceEEEEeCCCCceEEEEeCCC--ChHHHHHHHHHHHHcC
Q 036413          202 RKVCGYYKLDSLPVVLVIDPITGEKMRKWCGMV--DPVSLLEDLLSFMESG  250 (346)
Q Consensus       202 ~~~~~~y~~~~~P~i~iidp~tge~l~~~~G~~--~~~~~i~~L~~fl~~~  250 (346)
                      ..++..|++..+|++.|||+ .|+.+..+.|..  +.+++.+.|.+.....
T Consensus        96 ~~~~~~~~v~~~P~~~lid~-~G~i~~~~~g~~~~~~~~l~~~l~~l~~~~  145 (154)
T 3kcm_A           96 KRVGKLYGTTGVPETFVIDR-HGVILKKVVGAMEWDHPEVIAFLNNELSKA  145 (154)
T ss_dssp             CHHHHHHTCCSBCEEEEECT-TSBEEEEEESCCCTTSHHHHHHHHTC----
T ss_pred             hHHHHHhCCCCCCeEEEECC-CCcEEEEEcCCCccccHHHHHHHHHHHHHh
Confidence            33778899999999999996 699999999965  5667777776655444

>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris}

Probab=97.86  E-value=0.00016  Score=61.05  Aligned_cols=112  Identities=12%  Similarity=0.149  Sum_probs=83.7

Q ss_pred             HHHHhhcCCCcccccccCHHHHHHHhhhcCcEEEEEecCCCC--ccccccccccCCCHHHHHHhc--cCcEEEEEeecCC
Q 036413          117 NNLASLYRPPVDLMFNGSFEKAKDVGSDENKWLLVNLQSPKE--FTSHTLNRDTWADEAVSQTIR--ASNFIFWQVYDDD  192 (346)
Q Consensus       117 ~~l~~lf~PP~~l~~~gsf~~A~~~Ak~~~K~LlV~l~~~~~--f~c~~lnRdvw~~~~V~~~i~--~~nFVfw~~~~~~  192 (346)
                      ++|....+-|  .+-..+|++.+.   +.++.+||++..+||  .+|+++      .+-+-++.+  +..+.|+.++++ 
T Consensus         9 ~rl~~~~g~~--~vt~~~F~~~v~---~~~~~vlVdF~A~wCr~gpCk~i------aPvleela~e~~~~v~~~KVdvD-   76 (137)
T 2qsi_A            9 RAAARPNAPT--LVDEATVDDFIA---HSGKIVVLFFRGDAVRFPEAADL------AVVLPELINAFPGRLVAAEVAAE-   76 (137)
T ss_dssp             --------CE--EECTTTHHHHHH---TSSSEEEEEECCCTTTCTTHHHH------HHHHHHHHHTSTTTEEEEEECGG-
T ss_pred             HHHHHhcCCc--ccCHhHHHHHHh---cCCCcEEEEEeCCccCCCchhhH------HhHHHHHHHHccCCcEEEEEECC-
Confidence            3455544443  346788998773   344699999999999  999998      355555555  146889888777 


Q ss_pred             CCCCCChHHHHHHhhcCCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHHc
Q 036413          193 DDDDDDSECRKVCGYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMES  249 (346)
Q Consensus       193 ~~~~~~~eg~~~~~~y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~~  249 (346)
                             +...++..|++.+.|++++.-  .|+.+.++.|..+.+++.+.|.+.+..
T Consensus        77 -------e~~~la~~ygV~siPTlilFk--dG~~v~~~vG~~~k~~l~~~l~~~l~~  124 (137)
T 2qsi_A           77 -------AERGLMARFGVAVCPSLAVVQ--PERTLGVIAKIQDWSSYLAQIGAMLAE  124 (137)
T ss_dssp             -------GHHHHHHHHTCCSSSEEEEEE--CCEEEEEEESCCCHHHHHHHHHHHHHH
T ss_pred             -------CCHHHHHHcCCccCCEEEEEE--CCEEEEEEeCCCCHHHHHHHHHHHhcc
Confidence                   457899999999999999997  699999999999988888888888743

>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A

Probab=97.85  E-value=8.4e-05  Score=62.03  Aligned_cols=100  Identities=16%  Similarity=0.209  Sum_probs=71.7

Q ss_pred             cCcEEEEEecCCCCcc-ccccccccCCCHHHHHHhcc----CcEEEEEeecCCCCCCCC---------------------
Q 036413          145 ENKWLLVNLQSPKEFT-SHTLNRDTWADEAVSQTIRA----SNFIFWQVYDDDDDDDDD---------------------  198 (346)
Q Consensus       145 ~~K~LlV~l~~~~~f~-c~~lnRdvw~~~~V~~~i~~----~nFVfw~~~~~~~~~~~~---------------------  198 (346)
                      .+||+||++-.+||.. |...-..+   ..+.+-+++    .++.++.++++.  ..++                     
T Consensus        22 ~gk~vll~f~~~~C~~~C~~~~~~l---~~l~~~~~~~~~~~~~~vv~vs~d~--~~d~~~~~~~~~~~~~~~~~~l~~~   96 (164)
T 2ggt_A           22 LGQWLLIYFGFTHCPDVCPEELEKM---IQVVDEIDSITTLPDLTPLFISIDP--ERDTKEAIANYVKEFSPKLVGLTGT   96 (164)
T ss_dssp             TTCEEEEEEECTTCSSHHHHHHHHH---HHHHHHHHHSSSSCCEEEEEEESCT--TTCCHHHHHHHHHTTCSSCEEEECC
T ss_pred             CCCEEEEEEEeCCCCchhHHHHHHH---HHHHHHHhhccCCCcEEEEEEEeCC--CCCCHHHHHHHHHHcCCCeEEEeCC
Confidence            5899999999999998 97653221   122233331    277777777761  1111                     


Q ss_pred             -hHHHHHHhhcCCCCCc---------------eEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHHcC
Q 036413          199 -SECRKVCGYYKLDSLP---------------VVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMESG  250 (346)
Q Consensus       199 -~eg~~~~~~y~~~~~P---------------~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~~~  250 (346)
                       .....+++.|++...|               ++.|||+ .|+.+..+.|..+++++.+.|.+.+..+
T Consensus        97 ~d~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~-~G~i~~~~~g~~~~~~l~~~l~~ll~~~  163 (164)
T 2ggt_A           97 REEVDQVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGP-DGEFLDYFGQNKRKGEIAASIATHMRPY  163 (164)
T ss_dssp             HHHHHHHHHTTTCCEEEEEECTTSCEEEEECCEEEEECT-TSCEEEEEETTCCHHHHHHHHHHHHGGG
T ss_pred             HHHHHHHHHhcCeEEEecCCCCCCCeeEeccceEEEECC-CCeEEEEeCCCCCHHHHHHHHHHHHHhc
Confidence             2233577889988888               8999997 6999999999889999999999888654

>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A

Probab=97.84  E-value=1.6e-05  Score=66.51  Aligned_cols=102  Identities=11%  Similarity=-0.001  Sum_probs=67.1

Q ss_pred             HHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhc---cCcEEEEEeecCCCCCCC-------------------
Q 036413          140 DVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIR---ASNFIFWQVYDDDDDDDD-------------------  197 (346)
Q Consensus       140 ~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~---~~nFVfw~~~~~~~~~~~-------------------  197 (346)
                      ..+...+|++||++.++||..|+.+.      +.+.++.+   ..++.++.++.+....++                   
T Consensus        32 ~~~~~~gk~vlv~F~a~~C~~C~~~~------~~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (164)
T 2h30_A           32 SVYLKKDKPTLIKFWASWCPLCLSEL------GQAEKWAQDAKFSSANLITVASPGFLHEKKDGEFQKWYAGLNYPKLPV  105 (164)
T ss_dssp             GGGCCTTSCEEEEECCTTCHHHHHHH------HHHHHHHTCGGGTTSEEEEEECTTSTTCCCTTHHHHHHTTSCCTTSCE
T ss_pred             eHHHhCCCEEEEEEECCCCHHHHHHH------HHHHHHHHHcccCCcEEEEEEcCCCccccCHHHHHHHHHhCCCCcceE
Confidence            34556789999999999999998764      33333332   123344443332100000                   


Q ss_pred             -ChHHHHHHhhcCCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHH
Q 036413          198 -DSECRKVCGYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFME  248 (346)
Q Consensus       198 -~~eg~~~~~~y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~  248 (346)
                       ..+...++..|++..+|++.|||+ .|+.+..+.|..+.+++.+.|.+.+.
T Consensus       106 ~~d~~~~~~~~~~v~~~P~~~lid~-~G~i~~~~~g~~~~~~l~~~i~~~~~  156 (164)
T 2h30_A          106 VTDNGGTIAQNLNISVYPSWALIGK-DGDVQRIVKGSINEAQALALIRNPNA  156 (164)
T ss_dssp             EECTTCHHHHHTTCCSSSEEEEECT-TSCEEEEEESCCCHHHHHHHHHCTTC
T ss_pred             EEcCchHHHHHcCCCccceEEEECC-CCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence             111246778899999999999996 69999999998888877776665543

>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=97.80  E-value=0.00011  Score=63.00  Aligned_cols=100  Identities=19%  Similarity=0.181  Sum_probs=71.5

Q ss_pred             hhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCC-----------
Q 036413          143 SDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLD-----------  211 (346)
Q Consensus       143 k~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~-----------  211 (346)
                      .-.+||+||++..+||..|......+  +....++=+ .++.++.++.+.   +.......++..|++.           
T Consensus        57 ~~~gk~vll~F~a~~C~~C~~~~~~l--~~l~~~~~~-~~~~vv~v~~d~---~~~~~~~~~~~~~~~~~~~~~~d~~~~  130 (186)
T 1jfu_A           57 DFRGKTLLVNLWATWCVPCRKEMPAL--DELQGKLSG-PNFEVVAINIDT---RDPEKPKTFLKEANLTRLGYFNDQKAK  130 (186)
T ss_dssp             GGTTSEEEEEEECTTCHHHHHHHHHH--HHHHHHHCB-TTEEEEEEECCC---SCTTHHHHHHHHTTCCTTCCEECTTCH
T ss_pred             HcCCCEEEEEEEeCCCHhHHHHHHHH--HHHHHHhcc-CCcEEEEEECCC---CCHHHHHHHHHHcCCCCCceEECCcch
Confidence            33689999999999999998775443  122222323 688888888872   1123456677777664           


Q ss_pred             ------------CCceEEEEeCCCCceEEEEeCCCC--hHHHHHHHHHHHHc
Q 036413          212 ------------SLPVVLVIDPITGEKMRKWCGMVD--PVSLLEDLLSFMES  249 (346)
Q Consensus       212 ------------~~P~i~iidp~tge~l~~~~G~~~--~~~~i~~L~~fl~~  249 (346)
                                  .+|++.|||+ .|+.+..+.|..+  .+++.+.|...+..
T Consensus       131 ~~~~~~~~~~~~~~P~~~lid~-~G~i~~~~~g~~~~~~~~l~~~l~~ll~~  181 (186)
T 1jfu_A          131 VFQDLKAIGRALGMPTSVLVDP-QGCEIATIAGPAEWASEDALKLIRAATGK  181 (186)
T ss_dssp             HHHHHHTTTCCSSSSEEEEECT-TSBEEEEEESCCCTTSHHHHHHHHHHHC-
T ss_pred             HHHHhccccccCCCCEEEEECC-CCCEEEEEecCCccCHHHHHHHHHHHhcc
Confidence                        7999999997 6999999999754  77888888877653

>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A*

Probab=97.79  E-value=0.0001  Score=75.01  Aligned_cols=119  Identities=12%  Similarity=0.106  Sum_probs=90.6

Q ss_pred             HhhcCCCccc--ccccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccC---cEEEEEeecCCCC
Q 036413          120 ASLYRPPVDL--MFNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRAS---NFIFWQVYDDDDD  194 (346)
Q Consensus       120 ~~lf~PP~~l--~~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~---nFVfw~~~~~~~~  194 (346)
                      +.+|.+...+  +-..+|++++   .+.+|.+||++.++||..|+.+...+   +.+.+-+. .   ++.|..++.+   
T Consensus         5 ~~Ly~~~~~V~~Lt~~~f~~~v---~~~~k~vlV~FyA~WC~pCk~~~P~l---~~la~~~~-~~~~~v~~~~VD~d---   74 (519)
T 3t58_A            5 SVLYSSSDPLTLLDADSVRPTV---LGSSSAWAVEFFASWCGHAIAFAPTW---KELANDVK-DWRPALNLAVLDCA---   74 (519)
T ss_dssp             CCSCCTTSSSEEECTTTHHHHH---SSCSSEEEEEEECTTSHHHHHHHHHH---HHHHHHHG-GGTTTEEEEEEETT---
T ss_pred             cccCCCCCCcEECChHHHHHHH---HhCCCeEEEEEECCCCHHHHHHHHHH---HHHHHHhh-CcCCcEEEEEEECC---
Confidence            3456554443  3455677665   34579999999999999999995433   44455555 4   7999999998   


Q ss_pred             CCCChHHHHHHhhcCCCCCceEEEEeCC--CCceEEEEeCCCChHHHHHHHHHHHHcCC
Q 036413          195 DDDDSECRKVCGYYKLDSLPVVLVIDPI--TGEKMRKWCGMVDPVSLLEDLLSFMESGP  251 (346)
Q Consensus       195 ~~~~~eg~~~~~~y~~~~~P~i~iidp~--tge~l~~~~G~~~~~~~i~~L~~fl~~~~  251 (346)
                         ..+...++..|++..+|++.++++-  .|+.+....|..+++.+.+.|.+++....
T Consensus        75 ---~d~~~~l~~~~~V~~~PTl~~f~~g~~~G~~~~~~~g~~~~~~L~~~l~~~l~~~~  130 (519)
T 3t58_A           75 ---EETNSAVCREFNIAGFPTVRFFQAFTKNGSGATLPGAGANVQTLRMRLIDALESHR  130 (519)
T ss_dssp             ---SGGGHHHHHHTTCCSBSEEEEECTTCCSCCCEEECCSSCCHHHHHHHHHHHHTTCC
T ss_pred             ---ccccHHHHHHcCCcccCEEEEEcCcccCCCceeEecCCCCHHHHHHHHHHHHhhcc
Confidence               6677899999999999999999961  35555556677899999999999997755

>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A

Probab=97.79  E-value=2.5e-05  Score=62.15  Aligned_cols=87  Identities=13%  Similarity=0.167  Sum_probs=64.7

Q ss_pred             hcCcEEEEEecCCCCccccccccccCCCHHHHHHhccC-----cEEEEEeecCCCCCCCChHHHHHHhhcCCCCCceEEE
Q 036413          144 DENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRAS-----NFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVLV  218 (346)
Q Consensus       144 ~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~-----nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~i~i  218 (346)
                      ..+|.+||++.++||..|+.+...+   ..+.+-+. .     ++.|..++.+      ..+   ++.  ++..+|++.+
T Consensus        23 ~~~~~vlv~f~a~wC~~C~~~~p~~---~~~~~~~~-~~~~~~~v~~~~vd~~------~~~---~~~--~v~~~Pt~~~   87 (121)
T 2djj_A           23 DDTKDVLIEFYAPWCGHCKALAPKY---EELGALYA-KSEFKDRVVIAKVDAT------AND---VPD--EIQGFPTIKL   87 (121)
T ss_dssp             CTTSCEEEEEECSSCTTHHHHHHHH---HHHHHHHT-TSSCTTSSEEEEEETT------TSC---CSS--CCSSSSEEEE
T ss_pred             cCCCCEEEEEECCCCHhHHHhhHHH---HHHHHHHh-hcccCCceEEEEEECc------ccc---ccc--ccCcCCeEEE
Confidence            5689999999999999999996543   34555555 4     7999999888      322   344  8899999999


Q ss_pred             EeCCCCce-EEEEeCCCChHHHHHHHHHH
Q 036413          219 IDPITGEK-MRKWCGMVDPVSLLEDLLSF  246 (346)
Q Consensus       219 idp~tge~-l~~~~G~~~~~~~i~~L~~f  246 (346)
                      +++ .|+. +..+.|..+.++|.+.|.+.
T Consensus        88 ~~~-~~~~~~~~~~G~~~~~~l~~~i~~~  115 (121)
T 2djj_A           88 YPA-GAKGQPVTYSGSRTVEDLIKFIAEN  115 (121)
T ss_dssp             ECS-SCTTSCCCCCCCSCHHHHHHHHHHT
T ss_pred             EeC-cCCCCceEecCCCCHHHHHHHHHhc
Confidence            986 3442 56678988877666655543

>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15}

Probab=97.79  E-value=5.8e-05  Score=63.20  Aligned_cols=98  Identities=16%  Similarity=0.170  Sum_probs=67.5

Q ss_pred             hhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCC------------ChHHHHHHhhcC
Q 036413          142 GSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDD------------DSECRKVCGYYK  209 (346)
Q Consensus       142 Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~------------~~eg~~~~~~y~  209 (346)
                      +.-++|++||++.++||..|..+...+  .+...++=+ .++.|..++.+. +-.+            ......++..|+
T Consensus        37 ~~~~gk~vll~F~~~~C~~C~~~~~~l--~~~~~~~~~-~~~~~v~v~~d~-~~~~~~~~~~~~~~~~~d~~~~~~~~~~  112 (158)
T 3hdc_A           37 AQYRGKIVLVNFWASWCPYCRDEMPSM--DRLVKSFPK-GDLVVLAVNVEK-RFPEKYRRAPVSFNFLSDATGQVQQRYG  112 (158)
T ss_dssp             GGGTTSEEEEEEECTTCHHHHHHHHHH--HHHHHHSST-TSEEEEEEECSS-SCCGGGGGCCCSCEEEECTTSHHHHHTT
T ss_pred             HHhCCCEEEEEEECCcCHHHHHHHHHH--HHHHHHccc-CCeEEEEEeCCH-HHHHHHHHcCCCceEEECchHHHHHHhC
Confidence            334689999999999999998775433  122222323 689999998871 0000            011346889999


Q ss_pred             CCCCceEEEEeCCCCceEEEEeCCC--ChHHHHHHHH
Q 036413          210 LDSLPVVLVIDPITGEKMRKWCGMV--DPVSLLEDLL  244 (346)
Q Consensus       210 ~~~~P~i~iidp~tge~l~~~~G~~--~~~~~i~~L~  244 (346)
                      +..+|++.|||+ .|+.+..+.|..  +..++++.+.
T Consensus       113 v~~~P~~~lid~-~G~i~~~~~G~~~~~~~~~~~~~~  148 (158)
T 3hdc_A          113 ANRLPDTFIVDR-KGIIRQRVTGGIEWDAPKVVSYLK  148 (158)
T ss_dssp             CCSSSEEEEECT-TSBEEEEEESCCCTTSHHHHHHHH
T ss_pred             CCCcceEEEEcC-CCCEEEEEeCCCccchHHHHHHHH
Confidence            999999999997 699999999965  4455555543

>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae}

Probab=97.77  E-value=6.3e-05  Score=70.93  Aligned_cols=101  Identities=19%  Similarity=0.260  Sum_probs=76.7

Q ss_pred             ccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCC
Q 036413          132 NGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLD  211 (346)
Q Consensus       132 ~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~  211 (346)
                      ..+|++++   ++.+|++||++.++||..|+.+...+   +.+.+.+. .++.+..++.+      ..+...++..|++.
T Consensus        24 ~~~f~~~i---~~~~~~vlV~F~A~wC~~C~~~~p~~---~~la~~~~-~~~~~~~v~~d------~~~~~~l~~~~~I~   90 (298)
T 3ed3_A           24 PKSFDKAI---HNTNYTSLVEFYAPWCGHCKKLSSTF---RKAAKRLD-GVVQVAAVNCD------LNKNKALCAKYDVN   90 (298)
T ss_dssp             HHHHHHHH---TSSSSCEEEEEECTTCHHHHHHHHHH---HHHHHHTT-TTSEEEEEETT------STTTHHHHHHTTCC
T ss_pred             HHHHHHHH---HhCCCeEEEEEECCCCHHHHHHHHHH---HHHHHHcc-CCcEEEEEEcc------CccCHHHHHhCCCC
Confidence            44577766   35689999999999999999996533   45555666 67888888888      66678899999999


Q ss_pred             CCceEEEEeCCCCc-----------------eEEEEeCCCChHHHHHHHHHHH
Q 036413          212 SLPVVLVIDPITGE-----------------KMRKWCGMVDPVSLLEDLLSFM  247 (346)
Q Consensus       212 ~~P~i~iidp~tge-----------------~l~~~~G~~~~~~~i~~L~~fl  247 (346)
                      .+|++.++.+  |+                 ....+.|..+.+.+++-|.+.+
T Consensus        91 ~~Pt~~~~~~--g~~v~~~~g~~~~~~~~~~~~~~y~G~r~~~~i~~fl~~~~  141 (298)
T 3ed3_A           91 GFPTLMVFRP--PKIDLSKPIDNAKKSFSAHANEVYSGARTLAPIVDFSLSRI  141 (298)
T ss_dssp             BSSEEEEEEC--CCC-------------CCCEEEECCSCCSHHHHHHHHHTTC
T ss_pred             ccceEEEEEC--CceeecccccccccccccccceeecCCcCHHHHHHHHHHhc
Confidence            9999999996  43                 3556788888776665554443

>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.72  E-value=4.8e-05  Score=61.26  Aligned_cols=97  Identities=11%  Similarity=0.183  Sum_probs=69.4

Q ss_pred             cccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCC
Q 036413          131 FNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKL  210 (346)
Q Consensus       131 ~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~  210 (346)
                      -..+|++++.     ++ +||++.++||..|+.+...+   ..+.+.+...++.|..++.+      ..  ..++..|++
T Consensus        13 ~~~~f~~~~~-----~~-vlv~f~a~wC~~C~~~~p~~---~~~~~~~~~~~v~~~~vd~~------~~--~~~~~~~~v   75 (126)
T 1x5e_A           13 TDENWRELLE-----GD-WMIEFYAPWCPACQNLQPEW---ESFAEWGEDLEVNIAKVDVT------EQ--PGLSGRFII   75 (126)
T ss_dssp             CTTTHHHHTS-----SE-EEEEEECSSCHHHHHHHHHH---HHHHHHHGGGTCEEEEEETT------TC--HHHHHHTTC
T ss_pred             cHHHHHHHhC-----CC-EEEEEECCCCHHHHHHhHHH---HHHHHHhccCCeEEEEEECc------CC--HHHHHHcCC
Confidence            4566776542     23 79999999999999996443   23334444137999998887      32  458899999


Q ss_pred             CCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHH
Q 036413          211 DSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFM  247 (346)
Q Consensus       211 ~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl  247 (346)
                      ..+|++.++  ..|+ +..+.|..+.++|.+.|.+.+
T Consensus        76 ~~~Pt~~~~--~~G~-~~~~~G~~~~~~l~~~l~~~~  109 (126)
T 1x5e_A           76 NALPTIYHC--KDGE-FRRYQGPRTKKDFINFISDKE  109 (126)
T ss_dssp             CSSSEEEEE--ETTE-EEECCSCCCHHHHHHHHHTCG
T ss_pred             cccCEEEEE--eCCe-EEEeecCCCHHHHHHHHHHHh
Confidence            999999999  3587 567889888776666665544

>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis}

Probab=97.72  E-value=0.00014  Score=59.66  Aligned_cols=84  Identities=14%  Similarity=0.214  Sum_probs=61.9

Q ss_pred             hhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHH---------------------
Q 036413          143 SDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSEC---------------------  201 (346)
Q Consensus       143 k~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg---------------------  201 (346)
                      .-.+|++||++.++||..|...-..+-.++.+.+-+++.++.++.++.+.     ..+.                     
T Consensus        28 ~~~gk~vll~F~a~wC~~C~~~~~~l~~~~~l~~~~~~~~~~vi~i~~d~-----~~~~~~~~~~~~~~~~~~~~d~~~~  102 (142)
T 3eur_A           28 QFPAEYTLLFINNPGCHACAEMIEGLKASPVINGFTAAKKLKVLSIYPDE-----ELDEWKKHRNDFAKEWTNGYDKELV  102 (142)
T ss_dssp             TCCCSEEEEEECCSSSHHHHHHHHHHHHCHHHHHHHHTTSEEEEEEECSS-----CHHHHHHHGGGSCTTSEEEECTTCH
T ss_pred             HcCCCEEEEEEECCCCccHHHHHHHHhhhHHHHHHhccCCeEEEEEEcCC-----CHHHHHHHHHhcccccccccCccch
Confidence            33579999999999999998876555444445555543689999988872     2221                     


Q ss_pred             HHHHhhcCCCCCceEEEEeCCCCceEEEEeC
Q 036413          202 RKVCGYYKLDSLPVVLVIDPITGEKMRKWCG  232 (346)
Q Consensus       202 ~~~~~~y~~~~~P~i~iidp~tge~l~~~~G  232 (346)
                      ..++..|++..+|++.|||+ .|..+....|
T Consensus       103 ~~~~~~~~v~~~P~~~lid~-~G~i~~~~~~  132 (142)
T 3eur_A          103 IKNKNLYDLRAIPTLYLLDK-NKTVLLKDAT  132 (142)
T ss_dssp             HHHTTCSCCTTCSEEEEECT-TCBEEEEEEC
T ss_pred             hhhhhhcCCCcCCeEEEECC-CCcEEecCCC
Confidence            23578899999999999996 6988876544

>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens}

Probab=97.69  E-value=0.00025  Score=59.66  Aligned_cols=101  Identities=11%  Similarity=0.107  Sum_probs=71.8

Q ss_pred             hcCcEEEEEecCCCCcc-ccccccccCCCHHHHHHhcc----CcEEEEEeecCCCCCCCCh-------------------
Q 036413          144 DENKWLLVNLQSPKEFT-SHTLNRDTWADEAVSQTIRA----SNFIFWQVYDDDDDDDDDS-------------------  199 (346)
Q Consensus       144 ~~~K~LlV~l~~~~~f~-c~~lnRdvw~~~~V~~~i~~----~nFVfw~~~~~~~~~~~~~-------------------  199 (346)
                      -.+||+||++-.+||.. |...-..+   ..+.+-+++    .++.++.++++.  ..+++                   
T Consensus        24 ~~gk~vll~F~~~~C~~~C~~~~~~l---~~l~~~~~~~~~~~~v~vv~is~d~--~~d~~~~~~~~~~~~~~~~~~l~~   98 (171)
T 2rli_A           24 FRGQWVLMYFGFTHCPDICPDELEKL---VQVVRQLEAEPGLPPVQPVFITVDP--ERDDVEAMARYVQDFHPRLLGLTG   98 (171)
T ss_dssp             TTTSEEEEEEECTTCSSSHHHHHHHH---HHHHHHHHHSTTSCCEEEEEEESCS--TTCCHHHHHHHHHTTCTTCCEEEC
T ss_pred             hCCCEEEEEEEcCCCCchhHHHHHHH---HHHHHHHhhccCCCceEEEEEEECC--CCCCHHHHHHHHHHcCCCeEEEeC
Confidence            35899999999999998 97653221   122222321    378888877761  11122                   


Q ss_pred             ---HHHHHHhhcCCCCCc---------------eEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHHcC
Q 036413          200 ---ECRKVCGYYKLDSLP---------------VVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMESG  250 (346)
Q Consensus       200 ---eg~~~~~~y~~~~~P---------------~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~~~  250 (346)
                         ....+++.|++...|               ++.|||+ .|+.+..+.|..+++++.+.|.+.+...
T Consensus        99 ~~~~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~-~G~i~~~~~g~~~~~~l~~~l~~ll~~~  166 (171)
T 2rli_A           99 STKQVAQASHSYRVYYNAGPKDEDQDYIVDHSIAIYLLNP-DGLFTDYYGRSRSAEQISDSVRRHMAAF  166 (171)
T ss_dssp             CHHHHHHHHHHSCCCCEECCCCSSCCCCEECCCEEEEECT-TSCEEEEEESSCCHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhCeEEEecCCCCCCCeEEeccceEEEECC-CCeEEEEECCCCCHHHHHHHHHHHHHHH
Confidence               224677889887777               8999997 6999999999899999999999888654

>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus}

Probab=97.69  E-value=9.8e-05  Score=61.79  Aligned_cols=90  Identities=19%  Similarity=0.252  Sum_probs=65.3

Q ss_pred             cCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHH-------------------H--H
Q 036413          145 ENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSEC-------------------R--K  203 (346)
Q Consensus       145 ~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg-------------------~--~  203 (346)
                      .+|++||++..+||..|......+  .+...+|-. .++.++.++.+      ..+.                   .  .
T Consensus        34 ~gk~vll~F~a~wC~~C~~~~~~l--~~l~~~~~~-~~~~vv~i~~d------~~~~~~~~~~~~~~~~~~~d~~~~~~~  104 (152)
T 2lrt_A           34 KGKVVLIDFTVYNNAMSAAHNLAL--RELYNKYAS-QGFEIYQISLD------GDEHFWKTSADNLPWVCVRDANGAYSS  104 (152)
T ss_dssp             GGSEEEEEEECTTCHHHHHHHHHH--HHHHHHHGG-GTEEEEEEECS------CCHHHHHHHHTTCSSEEEECSSGGGCH
T ss_pred             CCCEEEEEEEcCCChhhHHHHHHH--HHHHHHhcc-CCeEEEEEEcc------CCHHHHHHHHhCCCceEEECCCCcchH
Confidence            579999999999999998764322  112222323 56999999888      2221                   1  3


Q ss_pred             HHhhcCCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHH
Q 036413          204 VCGYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLL  244 (346)
Q Consensus       204 ~~~~y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~  244 (346)
                      ++..|++..+|++.|||+ .|+.+..+.|..+.++.+..+.
T Consensus       105 ~~~~~~v~~~P~~~lid~-~G~i~~~~~g~~~~e~~~~~~~  144 (152)
T 2lrt_A          105 YISLYNVTNLPSVFLVNR-NNELSARGENIKDLDEAIKKLL  144 (152)
T ss_dssp             HHHHHTCCSCSEEEEEET-TTEEEEETTTCSCHHHHHHHHH
T ss_pred             HHHHcCcccCceEEEECC-CCeEEEecCCHHHHHHHHHHHH
Confidence            778899999999999997 6999999999877776555443

>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}

Probab=97.68  E-value=7.4e-05  Score=61.83  Aligned_cols=96  Identities=16%  Similarity=0.182  Sum_probs=68.1

Q ss_pred             cEEEEEecCCCCccccccccccCCCHHHHHHhccC-cEEEEEeecCCCCCC-------------------CChHHHHHHh
Q 036413          147 KWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRAS-NFIFWQVYDDDDDDD-------------------DDSECRKVCG  206 (346)
Q Consensus       147 K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~-nFVfw~~~~~~~~~~-------------------~~~eg~~~~~  206 (346)
                      |++||++.++||..|+.+..      .+.++.+ + ++.++.++.+.++..                   .......++.
T Consensus        31 k~vll~f~~~~C~~C~~~~~------~l~~l~~-~~~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  103 (154)
T 3ia1_A           31 KPAVIVFWASWCTVCKAEFP------GLHRVAE-ETGVPFYVISREPRDTREVVLEYMKTYPRFIPLLASDRDRPHEVAA  103 (154)
T ss_dssp             SSEEEEEECTTCHHHHHHHH------HHHHHHH-HHCCCEEEEECCTTCCHHHHHHHHTTCTTEEECBCCSSCCHHHHHT
T ss_pred             CeEEEEEEcccChhHHHHHH------HHHHHHH-HcCCeEEEEeCCCcccHHHHHHHHHHcCCCcccccccccchHHHHH
Confidence            99999999999999988753      3344333 2 344455555200000                   0025577889


Q ss_pred             hcCCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHHcC
Q 036413          207 YYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMESG  250 (346)
Q Consensus       207 ~y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~~~  250 (346)
                      .|++..+|++.|||+ .|+.+..+.|..+++++.+.|.+.+...
T Consensus       104 ~~~v~~~P~~~lid~-~G~i~~~~~g~~~~~~l~~~l~~~~~~~  146 (154)
T 3ia1_A          104 RFKVLGQPWTFVVDR-EGKVVALFAGRAGREALLDALLLAGADL  146 (154)
T ss_dssp             TSSBCSSCEEEEECT-TSEEEEEEESBCCHHHHHHHHHHTTCCC
T ss_pred             HhCCCcccEEEEECC-CCCEEEEEcCCCCHHHHHHHHHhccCcc
Confidence            999999999999996 6999999999999888888887766443

>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis}

Probab=97.68  E-value=0.00014  Score=59.34  Aligned_cols=94  Identities=11%  Similarity=0.178  Sum_probs=66.2

Q ss_pred             hhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChH-HHHH----------------
Q 036413          142 GSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSE-CRKV----------------  204 (346)
Q Consensus       142 Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~e-g~~~----------------  204 (346)
                      +.-.+|++||++.++||..|..+-..+-..+.+.+.+++.++.++.++.+.     +.+ ..++                
T Consensus        23 ~~~~gk~vll~F~a~~C~~C~~~~~~l~~~~~l~~~~~~~~~~~v~v~~d~-----~~~~~~~~~~~~~~~~~~~~d~~~   97 (142)
T 3ewl_A           23 SRLKAQYTMLFFYDPDCSNCRKFEKLFAEIPAFVEMVENGTLRVLAIYPDE-----NREEWATKAVYMPQGWIVGWNKAG   97 (142)
T ss_dssp             GGCCCSEEEEEECCSSCHHHHHHHHHHHTCHHHHHHHHHTSEEEEEEECSS-----CHHHHHHHHTTSCTTCEEEECTTC
T ss_pred             hhcCCCEEEEEEECCCCccHHHHHHHHHHhHHHHHHhccCCeEEEEEEecC-----CHHHHHHHHHHcCCCcceeeCCcc
Confidence            334689999999999999999875555445556665552679999988872     222 2222                


Q ss_pred             ----HhhcCCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHH
Q 036413          205 ----CGYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLL  244 (346)
Q Consensus       205 ----~~~y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~  244 (346)
                          +..|++..+|++.|||+ .|+.+.   +.++.+++.+.|.
T Consensus        98 ~~~~~~~~~v~~~P~~~lid~-~G~i~~---~~~~~~~l~~~l~  137 (142)
T 3ewl_A           98 DIRTRQLYDIRATPTIYLLDG-RKRVIL---KDTSMEQLIDYLA  137 (142)
T ss_dssp             HHHHTTCSCCCSSSEEEEECT-TCBEEE---CSCCHHHHHHHHH
T ss_pred             chhhHHHcCCCCCCeEEEECC-CCCEEe---cCCCHHHHHHHHH
Confidence                34789999999999997 688765   4466665555544

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A

Probab=97.65  E-value=0.00014  Score=64.77  Aligned_cols=101  Identities=7%  Similarity=0.235  Sum_probs=76.8

Q ss_pred             ccccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCc---EEEEEeecCCCCCCCChHHHHHHh
Q 036413          130 MFNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASN---FIFWQVYDDDDDDDDDSECRKVCG  206 (346)
Q Consensus       130 ~~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~n---FVfw~~~~~~~~~~~~~eg~~~~~  206 (346)
                      +-..+|++++    .++|.+||++.++||..|+.+...+   ..+.+-++ ..   +.|..++.+      ..  ..++.
T Consensus        20 l~~~~~~~~~----~~~~~v~v~F~a~wC~~C~~~~p~~---~~~~~~~~-~~~~~~~~~~vd~~------~~--~~l~~   83 (241)
T 3idv_A           20 LNDANFDNFV----ADKDTVLLEFYAPWCGHCKQFAPEY---EKIANILK-DKDPPIPVAKIDAT------SA--SVLAS   83 (241)
T ss_dssp             ECTTTHHHHH----TTCSEEEEEEECTTCHHHHHHHHHH---HHHHHHHH-TSSSCCCEEEEETT------TC--HHHHH
T ss_pred             ecccCHHHHH----hcCCeEEEEEECCCCHHHHHhhHHH---HHHHHHHh-hcCCceEEEEEecc------CC--HHHHH
Confidence            3456777766    4589999999999999999996433   33333344 33   888888877      32  57899


Q ss_pred             hcCCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHHc
Q 036413          207 YYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMES  249 (346)
Q Consensus       207 ~y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~~  249 (346)
                      .|++..+|++.++.  .|+.+ ...|..+.+++.+.+.+.+..
T Consensus        84 ~~~v~~~Pt~~~~~--~g~~~-~~~g~~~~~~l~~~i~~~~~~  123 (241)
T 3idv_A           84 RFDVSGYPTIKILK--KGQAV-DYEGSRTQEEIVAKVREVSQP  123 (241)
T ss_dssp             HTTCCSSSEEEEEE--TTEEE-ECCSCSCHHHHHHHHHHHHST
T ss_pred             hcCCCcCCEEEEEc--CCCcc-cccCcccHHHHHHHHhhccCc
Confidence            99999999999997  47766 478888999888888887654

>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A

Probab=97.65  E-value=0.00025  Score=60.17  Aligned_cols=110  Identities=9%  Similarity=0.013  Sum_probs=84.8

Q ss_pred             hHHHHhhcCCCcccccccCHHHHHHHhhhcCcEEEEEecCCC--CccccccccccCCCHHHHHHhc--cCc-EEEEEeec
Q 036413          116 NNNLASLYRPPVDLMFNGSFEKAKDVGSDENKWLLVNLQSPK--EFTSHTLNRDTWADEAVSQTIR--ASN-FIFWQVYD  190 (346)
Q Consensus       116 ~~~l~~lf~PP~~l~~~gsf~~A~~~Ak~~~K~LlV~l~~~~--~f~c~~lnRdvw~~~~V~~~i~--~~n-FVfw~~~~  190 (346)
                      .++|... +-  ..+-..+|++.+.    ..+.+||++..+|  |.+|+++      .+.+-++.+  +.. +.|+.+++
T Consensus        11 ~~rl~~~-g~--~~~t~~~F~~~v~----~~~~vlVdF~a~~crCgpCk~i------aPvleela~e~~g~~v~~~KVdv   77 (140)
T 2qgv_A           11 WQRMLAR-GW--TPVSESRLDDWLT----QAPDGVVLLSSDPKRTPEVSDN------PVMIGELLHEFPDYTWQVAIADL   77 (140)
T ss_dssp             HHHHHHT-TC--EECCHHHHHHHHH----TCSSEEEEECCCTTTCTTTTHH------HHHHHHHHTTCTTSCCEEEECCH
T ss_pred             HHHHHhc-CC--ccCCHHHHHHHHh----CCCCEEEEEeCCcccCCcHHHH------HhHHHHHHHHcCCCeEEEEEEEC
Confidence            3455544 33  2345677887772    5678999999988  8999888      466666665  134 78888766


Q ss_pred             CCCCCCCChHHHHHHhhcCCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHH
Q 036413          191 DDDDDDDDSECRKVCGYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFME  248 (346)
Q Consensus       191 ~~~~~~~~~eg~~~~~~y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~  248 (346)
                      +        +...++..|++.+.|++++.-  .|+.+.++.|..+.+.+.+.|.+++.
T Consensus        78 D--------e~~~lA~~ygV~sIPTlilFk--~G~~v~~~~G~~~k~~l~~~i~~~l~  125 (140)
T 2qgv_A           78 E--------QSEAIGDRFGAFRFPATLVFT--GGNYRGVLNGIHPWAELINLMRGLVE  125 (140)
T ss_dssp             H--------HHHHHHHHHTCCSSSEEEEEE--TTEEEEEEESCCCHHHHHHHHHHHHC
T ss_pred             C--------CCHHHHHHcCCccCCEEEEEE--CCEEEEEEecCCCHHHHHHHHHHHhc
Confidence            6        567899999999999999996  69999999999998889999888883

>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A

Probab=97.65  E-value=4e-05  Score=62.07  Aligned_cols=96  Identities=9%  Similarity=0.089  Sum_probs=66.0

Q ss_pred             ccCHHHHHHHhhhcCcEEEEEecCC-------CCccccccccccCCCHHHHHHhc--cCcEEEEEeecCCCCCCCC----
Q 036413          132 NGSFEKAKDVGSDENKWLLVNLQSP-------KEFTSHTLNRDTWADEAVSQTIR--ASNFIFWQVYDDDDDDDDD----  198 (346)
Q Consensus       132 ~gsf~~A~~~Ak~~~K~LlV~l~~~-------~~f~c~~lnRdvw~~~~V~~~i~--~~nFVfw~~~~~~~~~~~~----  198 (346)
                      ..+|++++..+  .+|.++|++.++       ||..|+.+.      +.+.++.+  ..++.|..++++      .    
T Consensus        12 ~~~~~~~~~~~--~~~~v~v~F~a~~~~~~~~wC~~C~~~~------p~l~~~~~~~~~~~~~~~vd~~------~~~~~   77 (123)
T 1wou_A           12 FEEFHRAVEQH--NGKTIFAYFTGSKDAGGKSWCPDCVQAE------PVVREGLKHISEGCVFIYCQVG------EKPYW   77 (123)
T ss_dssp             HHHHHHHHHTT--TTSEEEEEEECCBCTTCCBSCHHHHHHH------HHHHHHGGGCCTTEEEEEEECC------CHHHH
T ss_pred             HHHHHHHHHHh--CCCEEEEEEEccCCCCCCCcCHHHHHhh------HHHHHHHHHcCCCcEEEEEECC------Cchhh
Confidence            34566666544  489999999999       999999985      44555554  147999999984      1    


Q ss_pred             -hHHHHHHhhcCCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHH
Q 036413          199 -SECRKVCGYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFME  248 (346)
Q Consensus       199 -~eg~~~~~~y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~  248 (346)
                       .+...++..|++..+|++.+++.  |.++....| .+++    .|.+|++
T Consensus        78 ~d~~~~~~~~~~i~~~Pt~~~~~~--~~~~~g~~~-~~~~----~l~~~i~  121 (123)
T 1wou_A           78 KDPNNDFRKNLKVTAVPTLLKYGT--PQKLVESEC-LQAN----LVEMLFS  121 (123)
T ss_dssp             HCTTCHHHHHHCCCSSSEEEETTS--SCEEEGGGG-GCHH----HHHHHHH
T ss_pred             hchhHHHHHHCCCCeeCEEEEEcC--CceEecccc-CCHH----HHHHHHh
Confidence             12345788899999999999986  555543333 3444    3445543

>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=97.64  E-value=6.2e-05  Score=60.95  Aligned_cols=95  Identities=14%  Similarity=0.155  Sum_probs=67.2

Q ss_pred             hcCcEEEEEecCCCCccccccccccCCCHHHHHHhc-cCcEEEEEeecCCCCCCCChHHHHHHhhcCCCCCceEEEEeCC
Q 036413          144 DENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIR-ASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVLVIDPI  222 (346)
Q Consensus       144 ~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~-~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~i~iidp~  222 (346)
                      +.+|.+||++.++||..|+.+...+   ..+.+-++ ..+++|..++.+.      .  ..++..|++..+|++.++++ 
T Consensus        23 ~~~~~vlv~f~a~wC~~C~~~~p~~---~~~~~~~~~~~~~~~~~vd~~~------~--~~~~~~~~v~~~Pt~~~~~~-   90 (133)
T 2dj3_A           23 DPKKDVLIEFYAPWCGHCKQLEPIY---TSLGKKYKGQKDLVIAKMDATA------N--DITNDQYKVEGFPTIYFAPS-   90 (133)
T ss_dssp             CTTSEEEEEECCTTCSHHHHHHHHH---HHHHHHHTTSSSEEEEEECTTT------S--CCCCSSCCCSSSSEEEEECT-
T ss_pred             cCCCcEEEEEECCCChhHHHHHHHH---HHHHHHhcCCCCEEEEEecCCc------C--HHHHhhcCCCcCCEEEEEeC-
Confidence            3589999999999999999996442   23333333 1369999888772      2  34567899999999999985 


Q ss_pred             CCceE-EEEe-CCCChHHHHHHHHHHHHcC
Q 036413          223 TGEKM-RKWC-GMVDPVSLLEDLLSFMESG  250 (346)
Q Consensus       223 tge~l-~~~~-G~~~~~~~i~~L~~fl~~~  250 (346)
                      .|+.. ..+. |..++++|.+.|.+.+...
T Consensus        91 g~~~~~~~~~gg~~~~~~l~~~l~~~~~~~  120 (133)
T 2dj3_A           91 GDKKNPIKFEGGNRDLEHLSKFIDEHATKR  120 (133)
T ss_dssp             TCTTSCEECCSSCCSTTHHHHHHHHHSSSC
T ss_pred             CCcccceEecCCCcCHHHHHHHHHHhcccc
Confidence            23321 2355 6678888888887776543

>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1

Probab=97.63  E-value=0.00015  Score=53.71  Aligned_cols=81  Identities=15%  Similarity=0.121  Sum_probs=60.8

Q ss_pred             EEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCCCCceEEEEeCCCCceEE
Q 036413          149 LLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVLVIDPITGEKMR  228 (346)
Q Consensus       149 LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~i~iidp~tge~l~  228 (346)
                      .+|++.++||..|+.+...+   +.+.+-.. .++.|..++.++     .   ..++..|++..+|++.+    .|+.  
T Consensus         4 ~vv~f~~~~C~~C~~~~~~l---~~~~~~~~-~~~~~~~vd~~~-----~---~~~~~~~~v~~~Pt~~~----~G~~--   65 (85)
T 1nho_A            4 NIEVFTSPTCPYCPMAIEVV---DEAKKEFG-DKIDVEKIDIMV-----D---REKAIEYGLMAVPAIAI----NGVV--   65 (85)
T ss_dssp             CEEEESCSSSCCSTTHHHHH---HHHHHHHC-SSCCEEEECTTT-----C---GGGGGGTCSSCSSEEEE----TTTE--
T ss_pred             EEEEEECCCCcchHHHHHHH---HHHHHHhc-CCeEEEEEECCC-----C---HHHHHhCCceeeCEEEE----CCEE--
Confidence            47889999999999996432   33434444 578888887772     2   36888999999999998    4766  


Q ss_pred             EEeCCCChHHHHHHHHHHH
Q 036413          229 KWCGMVDPVSLLEDLLSFM  247 (346)
Q Consensus       229 ~~~G~~~~~~~i~~L~~fl  247 (346)
                      ++.|..+.+++.+.|.+.+
T Consensus        66 ~~~G~~~~~~l~~~l~~~l   84 (85)
T 1nho_A           66 RFVGAPSREELFEAINDEM   84 (85)
T ss_dssp             EEECSSCCHHHHHHHHHHC
T ss_pred             EEccCCCHHHHHHHHHHHh
Confidence            6789888888888777654

>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}

Probab=97.61  E-value=0.00027  Score=59.28  Aligned_cols=96  Identities=7%  Similarity=0.051  Sum_probs=68.3

Q ss_pred             hhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccC--cEEEEEeecCC-------------CCCCCChHH-----
Q 036413          142 GSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRAS--NFIFWQVYDDD-------------DDDDDDSEC-----  201 (346)
Q Consensus       142 Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~--nFVfw~~~~~~-------------~~~~~~~eg-----  201 (346)
                      +.-.+|++||++.++||..|..+.      +.+.++.+ +  ++.|..++.+.             ....++.+.     
T Consensus        33 ~~~~gk~~lv~F~~~~C~~C~~~~------~~l~~l~~-~~~~v~vv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (165)
T 3ha9_A           33 NNVGGDVVILWFMAAWCPSCVYMA------DLLDRLTE-KYREISVIAIDFWTAEALKALGLNKPGYPPPDTPEMFRKFI  105 (165)
T ss_dssp             GGCCSSEEEEEEECTTCTTHHHHH------HHHHHHHH-HCTTEEEEEEECCSHHHHHHHTCCSTTSCCCCCHHHHHHHH
T ss_pred             HHhCCCEEEEEEECCCCcchhhhH------HHHHHHHH-HcCCcEEEEEEecccccccccccccccCCCCCCHHHHHHHH
Confidence            344789999999999999998874      56666666 3  67787777650             000002211     


Q ss_pred             --------------HHHHhhcCCCCCceEEEEeCCCCceEEEEeCCC-ChHHHHHHHHHHH
Q 036413          202 --------------RKVCGYYKLDSLPVVLVIDPITGEKMRKWCGMV-DPVSLLEDLLSFM  247 (346)
Q Consensus       202 --------------~~~~~~y~~~~~P~i~iidp~tge~l~~~~G~~-~~~~~i~~L~~fl  247 (346)
                                    ..++..|++..+|++.|||+ .|+.+.  .|.. +.+++.+.|.+.+
T Consensus       106 ~~~~~~~~~~~~d~~~~~~~~~v~~~P~~~lid~-~G~i~~--~g~~~~~~~l~~~l~~l~  163 (165)
T 3ha9_A          106 ANYGDPSWIMVMDDGSLVEKFNVRSIDYIVIMDK-SSNVLY--AGTTPSLGELESVIKSVQ  163 (165)
T ss_dssp             HHHSCTTSEEEECCSHHHHHTTCCSSSEEEEEET-TCCEEE--EEESCCHHHHHHHHHHC-
T ss_pred             HHcCCCCeeEEeChHHHHHHhCCCCceEEEEEcC-CCcEEE--eCCCCCHHHHHHHHHHHh
Confidence                          26778899999999999997 688777  7877 8887777776543

>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron}

Probab=97.59  E-value=0.00032  Score=57.98  Aligned_cols=96  Identities=16%  Similarity=0.195  Sum_probs=68.6

Q ss_pred             hhcCcEEEEEecCCCCcc--ccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChH--------------------
Q 036413          143 SDENKWLLVNLQSPKEFT--SHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSE--------------------  200 (346)
Q Consensus       143 k~~~K~LlV~l~~~~~f~--c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~e--------------------  200 (346)
                      .-.+|++||++..+||..  |......+  .+...+|-++.++.++.++.+.     +.+                    
T Consensus        30 ~~~gk~vll~F~a~~C~~v~C~~~~~~l--~~l~~~~~~~~~~~~v~v~~d~-----~~~~~~~~~~~~~~~~~~~~d~~  102 (150)
T 3fw2_A           30 AFKQKSLLINFWASWNDSISQKQSNSEL--REIYKKYKKNKYIGMLGISLDV-----DKQQWKDAIKRDTLDWEQVCDFG  102 (150)
T ss_dssp             TTTTSEEEEEEECTTCCCHHHHHHHHHH--HHHHHHHTTCSSEEEEEEECCS-----CHHHHHHHHHHTTCCSEEECCSC
T ss_pred             hhCCCEEEEEEEeCCCCchHHHHHHHHH--HHHHHHhccCCCeEEEEEEcCC-----CHHHHHHHHHHhCCCceEEEcCc
Confidence            336899999999999999  98764322  1112222031468999988882     211                    


Q ss_pred             --HHHHHhhcCCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHHc
Q 036413          201 --CRKVCGYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMES  249 (346)
Q Consensus       201 --g~~~~~~y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~~  249 (346)
                        ...++..|++..+|++.|||+ .|+.+..+   .+++++.+.|.+.+..
T Consensus       103 ~~~~~~~~~~~v~~~P~~~lid~-~G~i~~~~---~~~~~l~~~l~~ll~~  149 (150)
T 3fw2_A          103 GLNSEVAKQYSIYKIPANILLSS-DGKILAKN---LRGEELKKKIENIVEE  149 (150)
T ss_dssp             GGGCHHHHHTTCCSSSEEEEECT-TSBEEEES---CCHHHHHHHHHHHHHH
T ss_pred             ccchHHHHHcCCCccCeEEEECC-CCEEEEcc---CCHHHHHHHHHHHHhc
Confidence              347888999999999999997 69888765   3788888888877653

>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A

Probab=97.59  E-value=0.00013  Score=61.41  Aligned_cols=99  Identities=12%  Similarity=0.093  Sum_probs=60.4

Q ss_pred             ccccCHHHHHHHhhhcCcEEEEEecCCC--CccccccccccCCCHHHHHHhccC--cEE--EEEeecCCCCCCCChHHHH
Q 036413          130 MFNGSFEKAKDVGSDENKWLLVNLQSPK--EFTSHTLNRDTWADEAVSQTIRAS--NFI--FWQVYDDDDDDDDDSECRK  203 (346)
Q Consensus       130 ~~~gsf~~A~~~Ak~~~K~LlV~l~~~~--~f~c~~lnRdvw~~~~V~~~i~~~--nFV--fw~~~~~~~~~~~~~eg~~  203 (346)
                      +-..+|++++..+    +.++|++...+  |..|+.|.      +.+.++.+ +  ++.  |..++++        +...
T Consensus        22 l~~~~f~~~i~~~----~~~vv~f~~~~~~C~~C~~l~------P~l~~la~-~~~~v~~~~~~Vd~d--------~~~~   82 (142)
T 2es7_A           22 VEASTVDDWIKRV----GDGVILLSSDPRRTPEVSDNP------VMIAELLR-EFPQFDWQVAVADLE--------QSEA   82 (142)
T ss_dssp             CCCC--------C----CSEEEEECCCSCC----CCHH------HHHHHHHH-TCTTSCCEEEEECHH--------HHHH
T ss_pred             cccccHHHHHHhC----CCEEEEEECCCCCCccHHHHH------HHHHHHHH-HhcccceeEEEEECC--------CCHH
Confidence            4457788877532    23677777665  88998884      55555555 3  456  7777655        4567


Q ss_pred             HHhhcCCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHHc
Q 036413          204 VCGYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMES  249 (346)
Q Consensus       204 ~~~~y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~~  249 (346)
                      ++..|++..+|++.++  +.|+.+.++.|..+.+++.+.|.+.+..
T Consensus        83 la~~~~V~~iPT~~~f--k~G~~v~~~~G~~~~~~l~~~i~~~l~~  126 (142)
T 2es7_A           83 IGDRFNVRRFPATLVF--TDGKLRGALSGIHPWAELLTLMRSIVDT  126 (142)
T ss_dssp             HHHTTTCCSSSEEEEE--SCC----CEESCCCHHHHHHHHHHHHC-
T ss_pred             HHHhcCCCcCCeEEEE--eCCEEEEEEeCCCCHHHHHHHHHHHhcc
Confidence            8999999999999999  4799998999998988888888887754

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A

Probab=97.57  E-value=0.00037  Score=61.60  Aligned_cols=90  Identities=14%  Similarity=0.128  Sum_probs=66.8

Q ss_pred             cCcEEEEEecCCCCccccccccccCCCHHHHHHhcc---CcEEEEEeecCCCCCCCChHHHHHHhhcCCCCCceEEEEeC
Q 036413          145 ENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRA---SNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVLVIDP  221 (346)
Q Consensus       145 ~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~---~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~i~iidp  221 (346)
                      .+++.+|++.++||..|+.+...+   ..+..-...   .++.|..++.+      .  ...++..|++..+|++.++. 
T Consensus       133 ~~~~~~v~F~a~wC~~C~~~~p~~---~~l~~~~~~~~~~~v~~~~vd~~------~--~~~l~~~~~v~~~Pt~~~~~-  200 (226)
T 1a8l_A          133 DQDVRILVFVTPTCPYCPLAVRMA---HKFAIENTKAGKGKILGDMVEAI------E--YPEWADQYNVMAVPKIVIQV-  200 (226)
T ss_dssp             CSCEEEEEEECSSCTTHHHHHHHH---HHHHHHHHHTTCCCEEEEEEEGG------G--CHHHHHHTTCCSSCEEEEEE-
T ss_pred             CCCcEEEEEeCCCCCccHHHHHHH---HHHHHhcccccCCcEEEEEEEcc------c--CHHHHHhCCCcccCeEEEEe-
Confidence            445559999999999999985332   222222220   37888888776      2  34688999999999988775 


Q ss_pred             CCCceEEEEeCCCChHHHHHHHHHHH
Q 036413          222 ITGEKMRKWCGMVDPVSLLEDLLSFM  247 (346)
Q Consensus       222 ~tge~l~~~~G~~~~~~~i~~L~~fl  247 (346)
                       .|+.+..+.|..+.++|.+.|.+.+
T Consensus       201 -~G~~~~~~~G~~~~~~l~~~l~~~l  225 (226)
T 1a8l_A          201 -NGEDRVEFEGAYPEKMFLEKLLSAL  225 (226)
T ss_dssp             -TTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred             -CCceeEEEcCCCCHHHHHHHHHHhh
Confidence             6888888999999888888887765

>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A

Probab=97.53  E-value=0.00032  Score=57.45  Aligned_cols=82  Identities=11%  Similarity=0.101  Sum_probs=59.3

Q ss_pred             HhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhc-cCcEEEEEeecCCCCCCCC---------------------
Q 036413          141 VGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIR-ASNFIFWQVYDDDDDDDDD---------------------  198 (346)
Q Consensus       141 ~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~-~~nFVfw~~~~~~~~~~~~---------------------  198 (346)
                      .+.-.+|++||++..+||..|+.+...+   ..+.+-++ ..++.+..++.+.     +                     
T Consensus        23 l~~~~gk~vll~F~a~wC~~C~~~~~~l---~~l~~~~~~~~~~~vv~v~~d~-----~~~~~~~~~~~~~~~~~~~~~~   94 (144)
T 1i5g_A           23 LPSLAGKTVFFYFSASWCPPSRAFTPQL---IDFYKAHAEKKNFEVMLISWDE-----SAEDFKDYYAKMPWLALPFEDR   94 (144)
T ss_dssp             GGGGTTSEEEEEEECTTCHHHHHHHHHH---HHHHHHHTTTTTEEEEEEECCS-----SHHHHHHHHTTCSSEECCTTCH
T ss_pred             HHHcCCCEEEEEEECCCCHHHHHHHHHH---HHHHHHhccCCCEEEEEEeCCC-----CHHHHHHHHHhCCccccccCch
Confidence            3444689999999999999998875433   22333333 1478888888872     2                     


Q ss_pred             hHHHHHHhhcCCCCCceEEEEeCCCCceEEEE
Q 036413          199 SECRKVCGYYKLDSLPVVLVIDPITGEKMRKW  230 (346)
Q Consensus       199 ~eg~~~~~~y~~~~~P~i~iidp~tge~l~~~  230 (346)
                      .....++..|++..+|++.|||+..|+.+...
T Consensus        95 d~~~~~~~~~~v~~~P~~~lid~~~G~i~~~~  126 (144)
T 1i5g_A           95 KGMEFLTTGFDVKSIPTLVGVEADSGNIITTQ  126 (144)
T ss_dssp             HHHHHHHHHTTCCSSSEEEEEETTTCCEEESC
T ss_pred             HHHHHHHHHcCCCCCCEEEEEECCCCcEEecc
Confidence            22567889999999999999995468877653

>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1

Probab=97.52  E-value=0.00029  Score=52.09  Aligned_cols=82  Identities=15%  Similarity=0.176  Sum_probs=60.9

Q ss_pred             cEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCCCCceEEEEeCCCCce
Q 036413          147 KWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVLVIDPITGEK  226 (346)
Q Consensus       147 K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~i~iidp~tge~  226 (346)
                      +..+|++.++||..|+.+...+   +.+.+-.. .++.|..++.++     .   ..++..|++..+|++.+    .|+.
T Consensus         3 ~~~vv~f~~~~C~~C~~~~~~l---~~~~~~~~-~~~~~~~vd~~~-----~---~~~~~~~~v~~~Pt~~~----~G~~   66 (85)
T 1fo5_A            3 KVKIELFTSPMCPHCPAAKRVV---EEVANEMP-DAVEVEYINVME-----N---PQKAMEYGIMAVPTIVI----NGDV   66 (85)
T ss_dssp             CEEEEEEECCCSSCCCTHHHHH---HHHHHHCS-SSEEEEEEESSS-----S---CCTTTSTTTCCSSEEEE----TTEE
T ss_pred             ceEEEEEeCCCCCchHHHHHHH---HHHHHHcC-CceEEEEEECCC-----C---HHHHHHCCCcccCEEEE----CCEE
Confidence            4568899999999999985422   23333344 589999888872     2   25778899999999998    4765


Q ss_pred             EEEEeCCCChHHHHHHHHHH
Q 036413          227 MRKWCGMVDPVSLLEDLLSF  246 (346)
Q Consensus       227 l~~~~G~~~~~~~i~~L~~f  246 (346)
                        .+.|..+++++.+.|.+.
T Consensus        67 --~~~G~~~~~~l~~~l~~~   84 (85)
T 1fo5_A           67 --EFIGAPTKEALVEAIKKR   84 (85)
T ss_dssp             --ECCSSSSSHHHHHHHHHH
T ss_pred             --eeecCCCHHHHHHHHHHh
Confidence              778988888887777654

>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1

Probab=97.51  E-value=0.00013  Score=48.20  Aligned_cols=39  Identities=23%  Similarity=0.198  Sum_probs=34.4

Q ss_pred             hhHHHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHh
Q 036413            8 KQRKRVISSFLEITNGQTEETALKILNATNWNLDKAILRFN   48 (346)
Q Consensus         8 ~~~~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~   48 (346)
                      ++.++.|.+++++  |-+.+.|++.|..++||++.|++..|
T Consensus         2 ~~~~~~i~~L~~m--Gf~~~~a~~AL~~~~~n~e~A~~~L~   40 (40)
T 1z96_A            2 PGLNSKIAQLVSM--GFDPLEAAQALDAANGDLDVAASFLL   40 (40)
T ss_dssp             -CHHHHHHHHHHT--TCCHHHHHHHHHHTTTCHHHHHHHHC
T ss_pred             chHHHHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHC
Confidence            3456789999999  88999999999999999999998764

>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C

Probab=97.49  E-value=6.1e-05  Score=69.55  Aligned_cols=103  Identities=15%  Similarity=0.182  Sum_probs=74.2

Q ss_pred             ccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhc-cCcEEEEEeecCCCCCCCChHHHHHHhhcCC
Q 036413          132 NGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIR-ASNFIFWQVYDDDDDDDDDSECRKVCGYYKL  210 (346)
Q Consensus       132 ~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~-~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~  210 (346)
                      ...|.+++..+ ..+|+++|++..+||..|+.+.      +.+.++.. -.++.|..++++      .   ..++..|++
T Consensus       120 ~~~f~~~v~~~-~~~k~VvV~Fya~wC~~Ck~l~------p~l~~La~~~~~v~f~kVd~d------~---~~l~~~~~I  183 (245)
T 1a0r_P          120 GEQFLETIEKE-QKITTIVVHIYEDGIKGCDALN------SSLICLAAEYPMVKFCKIKAS------N---TGAGDRFSS  183 (245)
T ss_dssp             HHHHHHHHHSS-CTTCEEEEEEECTTSTTHHHHH------HHHHHHHHHCTTSEEEEEEHH------H---HCCTTSSCT
T ss_pred             HHHHHHHHHHh-cCCCEEEEEEECCCChHHHHHH------HHHHHHHHHCCCCEEEEEeCC------c---HHHHHHCCC
Confidence            34566666544 3589999999999999999995      34444443 024788888776      3   447889999


Q ss_pred             CCCceEEEEeCCCCceEEEEeCCCCh---HHHHHHHHHHHHcCCc
Q 036413          211 DSLPVVLVIDPITGEKMRKWCGMVDP---VSLLEDLLSFMESGPR  252 (346)
Q Consensus       211 ~~~P~i~iidp~tge~l~~~~G~~~~---~~~i~~L~~fl~~~~~  252 (346)
                      ..+|+++|+.  .|+.+..+.|..+.   +-....|..+|..+-.
T Consensus       184 ~~~PTll~~~--~G~~v~~~vG~~~~~g~~~~~e~Le~~L~~~g~  226 (245)
T 1a0r_P          184 DVLPTLLVYK--GGELLSNFISVTEQLAEEFFTGDVESFLNEYGL  226 (245)
T ss_dssp             TTCSEEEEEE--TTEEEEEETTGGGGSCTTCCHHHHHHHHHTTTC
T ss_pred             CCCCEEEEEE--CCEEEEEEeCCcccccccccHHHHHHHHHHcCC
Confidence            9999998886  69998888886431   1245678888877643

>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=97.46  E-value=0.00038  Score=58.61  Aligned_cols=94  Identities=14%  Similarity=0.168  Sum_probs=65.5

Q ss_pred             cCcE-EEEEec-CCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChH-------------------HHH
Q 036413          145 ENKW-LLVNLQ-SPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSE-------------------CRK  203 (346)
Q Consensus       145 ~~K~-LlV~l~-~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~e-------------------g~~  203 (346)
                      .+|+ ++|++. ++||..|......+  .+...+|=. .++.++.++.+      +++                   ...
T Consensus        27 ~gk~~vvl~F~~a~~C~~C~~~~~~l--~~~~~~~~~-~~v~vv~vs~d------~~~~~~~~~~~~~~~~~~~~d~~~~   97 (161)
T 3drn_A           27 IGKHNIVLYFYPKDDTPGSTREASAF--RDNWDLLKD-YDVVVIGVSSD------DINSHKRFKEKYKLPFILVSDPDKK   97 (161)
T ss_dssp             TTTSEEEEEECSCTTCHHHHHHHHHH--HHTHHHHHT-TCEEEEEEESC------CHHHHHHHHHHTTCCSEEEECTTSH
T ss_pred             cCCCCEEEEEEcCCCCCchHHHHHHH--HHHHHHHHH-cCCEEEEEeCC------CHHHHHHHHHHhCCCceEEECCcHH
Confidence            4676 999998 99999998764332  112222323 57888888887      442                   345


Q ss_pred             HHhhcCCCC----CceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHH
Q 036413          204 VCGYYKLDS----LPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFME  248 (346)
Q Consensus       204 ~~~~y~~~~----~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~  248 (346)
                      ++..|++..    +|++.|||+ .|+.+..+.|...+...++.+.+.++
T Consensus        98 ~~~~~~v~~~~~~~P~~~lid~-~G~i~~~~~g~~~~~~~~~~il~~l~  145 (161)
T 3drn_A           98 IRELYGAKGFILPARITFVIDK-KGIIRHIYNSQMNPANHVNEALKALK  145 (161)
T ss_dssp             HHHHTTCCCSSSCCCEEEEECT-TSBEEEEEECSSCTTHHHHHHHHHHH
T ss_pred             HHHHcCCCCcCcccceEEEECC-CCEEEEEEecCCCCCcCHHHHHHHHH
Confidence            677888877    999999997 69999999995555555555555553

>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major}

Probab=97.46  E-value=0.00032  Score=59.66  Aligned_cols=82  Identities=13%  Similarity=0.201  Sum_probs=59.5

Q ss_pred             HHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhcc-CcEEEEEeecCCCCCCCChH------------------
Q 036413          140 DVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRA-SNFIFWQVYDDDDDDDDDSE------------------  200 (346)
Q Consensus       140 ~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~-~nFVfw~~~~~~~~~~~~~e------------------  200 (346)
                      ..+.-.+|++||++..+||..|+.+...+   ..+.+-+++ .++.+..++++.     +.+                  
T Consensus        42 ~l~~~~gk~vll~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~v~vv~v~~d~-----~~~~~~~~~~~~~~~~~~~~~  113 (165)
T 3s9f_A           42 DMDSLSGKTVFFYFSASWCPPCRGFTPQL---VEFYEKHHDSKNFEIILASWDE-----EEDDFNAYYAKMPWLSIPFAN  113 (165)
T ss_dssp             CSGGGTTSEEEEEEECTTCHHHHHHHHHH---HHHHHHHTTTTTEEEEEEECCC-----SHHHHHHHHTTCSSEECCTTC
T ss_pred             cHHHcCCCEEEEEEECCcChhHHHHHHHH---HHHHHHhccCCCeEEEEEecCC-----CHHHHHHHHHhCCCcccccCc
Confidence            34445689999999999999998875333   223333341 378888888772     211                  


Q ss_pred             ---HHHHHhhcCCCCCceEEEEeCCCCceEEE
Q 036413          201 ---CRKVCGYYKLDSLPVVLVIDPITGEKMRK  229 (346)
Q Consensus       201 ---g~~~~~~y~~~~~P~i~iidp~tge~l~~  229 (346)
                         ...++..|++..+|++.|||+.+|+.+..
T Consensus       114 ~~~~~~l~~~~~v~~~Pt~~lid~~~G~iv~~  145 (165)
T 3s9f_A          114 RNIVEALTKKYSVESIPTLIGLNADTGDTVTT  145 (165)
T ss_dssp             HHHHHHHHHHTTCCSSSEEEEEETTTCCEEES
T ss_pred             hhHHHHHHHHcCCCCCCEEEEEeCCCCEEEec
Confidence               26889999999999999999755887765

>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A

Probab=97.44  E-value=0.00043  Score=56.89  Aligned_cols=83  Identities=13%  Similarity=0.204  Sum_probs=59.8

Q ss_pred             HHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhc-cCcEEEEEeecCCCCCCCC--------------------
Q 036413          140 DVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIR-ASNFIFWQVYDDDDDDDDD--------------------  198 (346)
Q Consensus       140 ~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~-~~nFVfw~~~~~~~~~~~~--------------------  198 (346)
                      ..+.-.+|++||++.++||..|+.+...+   ..+.+-++ ..++.+..++.+.     +                    
T Consensus        22 ~l~~~~gk~vll~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~vv~v~~d~-----~~~~~~~~~~~~~~~~~~~~~   93 (146)
T 1o8x_A           22 EVKSLAGKLVFFYFSASWCPPARGFTPQL---IEFYDKFHESKNFEVVFCTWDE-----EEDGFAGYFAKMPWLAVPFAQ   93 (146)
T ss_dssp             EGGGGTTCEEEEEEECTTCHHHHHHHHHH---HHHHHHHTTTTTEEEEEEECCC-----SHHHHHHHHTTCSSEECCGGG
T ss_pred             cHHHhCCCEEEEEEEccCCHHHHHHHHHH---HHHHHHhhhcCCeEEEEEeCCC-----CHHHHHHHHHHCCceeeccch
Confidence            34445689999999999999998875333   22223233 1478888888872     2                    


Q ss_pred             -hHHHHHHhhcCCCCCceEEEEeCCCCceEEEE
Q 036413          199 -SECRKVCGYYKLDSLPVVLVIDPITGEKMRKW  230 (346)
Q Consensus       199 -~eg~~~~~~y~~~~~P~i~iidp~tge~l~~~  230 (346)
                       .....++..|++..+|++.|||+..|+.+...
T Consensus        94 ~d~~~~~~~~~~v~~~Pt~~lid~~~G~i~~~~  126 (146)
T 1o8x_A           94 SEAVQKLSKHFNVESIPTLIGVDADSGDVVTTR  126 (146)
T ss_dssp             HHHHHHHHHHTTCCSSSEEEEEETTTCCEEESC
T ss_pred             hhHHHHHHHHhCCCCCCEEEEEECCCCeEEEec
Confidence             22567889999999999999995468877653

>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1

Probab=97.43  E-value=0.00016  Score=57.95  Aligned_cols=44  Identities=14%  Similarity=0.313  Sum_probs=40.5

Q ss_pred             hhhHHHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhhcC
Q 036413            7 KKQRKRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNNNS   51 (346)
Q Consensus         7 ~~~~~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~~~   51 (346)
                      ..+.++.|...+++ ||.+++.|+..|..|||||+.||...|+..
T Consensus        36 d~d~eekVk~L~Em-tG~seeeAr~AL~~~ngDl~~AI~~Lleg~   79 (104)
T 1wj7_A           36 DADFEEKVKQLIDI-TGKNQDECVIALHDCNGDVNRAINVLLEGN   79 (104)
T ss_dssp             CHHHHHHHHHHHHH-TCCCHHHHHHHHHHHTSCHHHHHHHHHTCS
T ss_pred             cccHHHHHHHHHHh-hCCCHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence            35668899999999 999999999999999999999999999865

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A

Probab=97.42  E-value=0.00018  Score=71.33  Aligned_cols=103  Identities=16%  Similarity=0.219  Sum_probs=80.6

Q ss_pred             cccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCC
Q 036413          131 FNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKL  210 (346)
Q Consensus       131 ~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~  210 (346)
                      -..+|++++ .....++.+||+++++||..|+.|....   +.+.+.++ ..+.|..++.+      .  ...++..|++
T Consensus         7 ~~~~f~~~i-~~~~~~~~~lv~F~a~wC~~C~~~~p~~---~~~a~~~~-~~v~~~~vd~~------~--~~~l~~~~~v   73 (481)
T 3f8u_A            7 TDDNFESRI-SDTGSAGLMLVEFFAPWCGHAKRLAPEY---EAAATRLK-GIVPLAKVDCT------A--NTNTCNKYGV   73 (481)
T ss_dssp             CTTTHHHHT-TCCSSSSEEEEEEECTTCHHHHHHHHHH---HHHHHHTT-TTCCEEEEETT------T--CHHHHHHTTC
T ss_pred             cHHHHHHHH-HhCCCCCeEEEEEECCCCHHHHHhHHHH---HHHHHHhc-CceEEEEEECC------C--CHHHHHhcCC
Confidence            355688777 3344569999999999999999996433   45666666 66778888777      3  3679999999


Q ss_pred             CCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHH
Q 036413          211 DSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFME  248 (346)
Q Consensus       211 ~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~  248 (346)
                      ..||++.++.  .|+.+....|..+.+.+++.|.+.+.
T Consensus        74 ~~~Ptl~~~~--~g~~~~~~~G~~~~~~l~~~~~~~~~  109 (481)
T 3f8u_A           74 SGYPTLKIFR--DGEEAGAYDGPRTADGIVSHLKKQAG  109 (481)
T ss_dssp             CEESEEEEEE--TTEEEEECCSCSSHHHHHHHHHHHTS
T ss_pred             CCCCEEEEEe--CCceeeeecCccCHHHHHHHHHhhcc
Confidence            9999999995  58888888999898888887777654

>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis}

Probab=97.41  E-value=0.00037  Score=67.55  Aligned_cols=102  Identities=13%  Similarity=0.028  Sum_probs=73.4

Q ss_pred             hcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChH-------------------HHHH
Q 036413          144 DENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSE-------------------CRKV  204 (346)
Q Consensus       144 ~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~e-------------------g~~~  204 (346)
                      -.+|++||++..+||..|+.+...+   ..+.+-+.+.++.++.++.+.+..+++++                   ...+
T Consensus        80 l~GK~vLl~F~atwC~~C~~~~p~L---~~l~~~~~~~~v~vi~Vs~d~~~~~d~~~~~~~~~~~~~l~fpv~~D~~~~l  156 (352)
T 2hyx_A           80 LRGKVVLIDFWAYSCINCQRAIPHV---VGWYQAYKDSGLAVIGVHTPEYAFEKVPGNVAKGAANLGISYPIALDNNYAT  156 (352)
T ss_dssp             GTTSEEEEEEECTTCHHHHHHHHHH---HHHHHHHGGGTEEEEEEECCSSGGGGCHHHHHHHHHHHTCCSCEEECTTSHH
T ss_pred             hCCCEEEEEEECCCChhHHHHHHHH---HHHHHHhhcCCeEEEEEECCcccccCCHHHHHHHHHHcCCCccEEeCCcHHH
Confidence            3589999999999999998774332   12222233147999998765100000111                   2457


Q ss_pred             HhhcCCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHHc
Q 036413          205 CGYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMES  249 (346)
Q Consensus       205 ~~~y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~~  249 (346)
                      +..|++..+|++.|||+ .|+.+..+.|..+.+++.+.|.+.+..
T Consensus       157 ~~~ygV~~~Pt~~lID~-~G~Iv~~~~G~~~~~~l~~~I~~lL~e  200 (352)
T 2hyx_A          157 WTNYRNRYWPAEYLIDA-TGTVRHIKFGEGDYNVTETLVRQLLND  200 (352)
T ss_dssp             HHHTTCCEESEEEEECT-TSBEEEEEESBCCHHHHHHHHHHHHHH
T ss_pred             HHHcCCCccCEEEEEeC-CCeEEEEEcCCCCHHHHHHHHHHHHhh
Confidence            78899999999999996 699999999988999999999888854

>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus}

Probab=97.38  E-value=0.00023  Score=61.39  Aligned_cols=104  Identities=13%  Similarity=0.136  Sum_probs=70.1

Q ss_pred             cCc-EEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCC--CCCh-------------------HHH
Q 036413          145 ENK-WLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDD--DDDS-------------------ECR  202 (346)
Q Consensus       145 ~~K-~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~--~~~~-------------------eg~  202 (346)
                      .+| ++||++.++||..|+..-..+  +....+|-+ .++.++.++.+....  .++.                   +..
T Consensus        44 ~gk~~vlv~F~a~~C~~C~~~~~~l--~~l~~~~~~-~~v~vv~v~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~~~  120 (196)
T 2ywi_A           44 KSDAATVIMFICNHCPFVKHVQHEL--VRLANDYMP-KGVSFVAINSNDAEQYPEDSPENMKKVAEELGYPFPYLYDETQ  120 (196)
T ss_dssp             CCSSEEEEEECCSSCHHHHHHHHHH--HHHHHHHGG-GTCEEEEEECSCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSC
T ss_pred             CCCCeEEEEEeCCCCccHHHHHHHH--HHHHHHHHh-CCcEEEEEECCccccccccCHHHHHHHHHHcCCCceEEECCch
Confidence            466 599999999999998664222  111222223 468888888751000  0011                   123


Q ss_pred             HHHhhcCCCCCceEEEEeCCCCceEEEE---------eCCCChHHHHHHHHHHHHcCCc
Q 036413          203 KVCGYYKLDSLPVVLVIDPITGEKMRKW---------CGMVDPVSLLEDLLSFMESGPR  252 (346)
Q Consensus       203 ~~~~~y~~~~~P~i~iidp~tge~l~~~---------~G~~~~~~~i~~L~~fl~~~~~  252 (346)
                      .++..|++..+|++.|||+ .|+.+..+         .|..+++++.+.|.+.+...+.
T Consensus       121 ~~~~~~~v~~~P~~~lid~-~G~i~~~~~~~~~~~~~~g~~~~~~l~~~i~~ll~~~~~  178 (196)
T 2ywi_A          121 EVAKAYDAACTPDFYIFDR-DLKCVYRGQLDDSRPNNGIPVTGESIRAALDALLEGRPV  178 (196)
T ss_dssp             HHHHHHTCCEESEEEEEET-TCBEEEEECSSSCCTTTCCCCCCHHHHHHHHHHHHTCCC
T ss_pred             HHHHHhCCCCCCeEEEEcC-CCeEEEccccCcccccccCccCHHHHHHHHHHHHcCCCC
Confidence            5677888889999999996 69988773         4667889999999998876543

>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens}

Probab=97.37  E-value=0.00059  Score=66.00  Aligned_cols=102  Identities=17%  Similarity=0.234  Sum_probs=77.7

Q ss_pred             cccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhc-----cCcEEEEEeecCCCCCCCChHHHHHH
Q 036413          131 FNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIR-----ASNFIFWQVYDDDDDDDDDSECRKVC  205 (346)
Q Consensus       131 ~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~-----~~nFVfw~~~~~~~~~~~~~eg~~~~  205 (346)
                      -..+|++++    ..+|++||++.++||..|+.+... |  +.+.+.++     ..++.|..++.+      ..  ..++
T Consensus        11 ~~~~f~~~~----~~~~~vlV~F~a~wC~~C~~~~p~-~--~~~a~~~~~~~~~~~~v~~~~Vd~~------~~--~~l~   75 (382)
T 2r2j_A           11 DTENIDEIL----NNADVALVNFYADWCRFSQMLHPI-F--EEASDVIKEEFPNENQVVFARVDCD------QH--SDIA   75 (382)
T ss_dssp             CTTTHHHHH----HHCSEEEEEEECTTCHHHHHHHHH-H--HHHHHHHTTCC---CCEEEEEEETT------TC--HHHH
T ss_pred             CHHHHHHHH----hcCCeEEEEEECCCCHHHHHHHHH-H--HHHHHHHHhhcCCCCceEEEEEECC------cc--HHHH
Confidence            356688766    357899999999999999999543 2  34444442     045889998877      32  5699


Q ss_pred             hhcCCCCCceEEEEeCCCCceEE-EEeCCCChHHHHHHHHHHHHc
Q 036413          206 GYYKLDSLPVVLVIDPITGEKMR-KWCGMVDPVSLLEDLLSFMES  249 (346)
Q Consensus       206 ~~y~~~~~P~i~iidp~tge~l~-~~~G~~~~~~~i~~L~~fl~~  249 (346)
                      ..|++..||++.++.  .|+.+. ...|..+.+.+++.|.+.+..
T Consensus        76 ~~~~v~~~Pt~~~f~--~G~~~~~~~~G~~~~~~l~~~i~~~~~~  118 (382)
T 2r2j_A           76 QRYRISKYPTLKLFR--NGMMMKREYRGQRSVKALADYIRQQKSD  118 (382)
T ss_dssp             HHTTCCEESEEEEEE--TTEEEEEECCSCCSHHHHHHHHHHHHSC
T ss_pred             HhcCCCcCCEEEEEe--CCcEeeeeecCcchHHHHHHHHHHhccC
Confidence            999999999999885  588776 478988999888888887754

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A

Probab=97.37  E-value=0.00056  Score=68.35  Aligned_cols=100  Identities=10%  Similarity=0.180  Sum_probs=79.3

Q ss_pred             ccccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccC-cEEEEEeecCCCCCCCChHHHHHHhhc
Q 036413          130 MFNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRAS-NFIFWQVYDDDDDDDDDSECRKVCGYY  208 (346)
Q Consensus       130 ~~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~-nFVfw~~~~~~~~~~~~~eg~~~~~~y  208 (346)
                      +-..+|++++    +.+|++||+++++||..|+.+....   +.+.+-++ . ++.|..++.+      ..  ..++..|
T Consensus        19 l~~~~f~~~~----~~~~~~lv~F~a~wC~~C~~~~p~~---~~~a~~~~-~~~v~~~~vd~~------~~--~~l~~~~   82 (504)
T 2b5e_A           19 LATDSFNEYI----QSHDLVLAEFFAPWCGHCKNMAPEY---VKAAETLV-EKNITLAQIDCT------EN--QDLCMEH   82 (504)
T ss_dssp             CCTTTHHHHH----TTCSEEEEEEECTTCHHHHHHHHHH---HHHHHHTT-TTTCEEEEEETT------TC--HHHHHHT
T ss_pred             CCHHHHHHHH----hcCCeEEEEEECCCCHHHHHhHHHH---HHHHHHhc-cCCeEEEEEECC------CC--HHHHHhc
Confidence            3467788876    3589999999999999999995432   44555566 5 5999999888      32  5699999


Q ss_pred             CCCCCceEEEEeCCCCce--EEEEeCCCChHHHHHHHHHHH
Q 036413          209 KLDSLPVVLVIDPITGEK--MRKWCGMVDPVSLLEDLLSFM  247 (346)
Q Consensus       209 ~~~~~P~i~iidp~tge~--l~~~~G~~~~~~~i~~L~~fl  247 (346)
                      ++..||++.++..  |+.  +....|..+.+.+++.|.+.+
T Consensus        83 ~v~~~Pt~~~~~~--g~~~~~~~~~G~~~~~~l~~~l~~~~  121 (504)
T 2b5e_A           83 NIPGFPSLKIFKN--SDVNNSIDYEGPRTAEAIVQFMIKQS  121 (504)
T ss_dssp             TCCSSSEEEEEET--TCTTCEEECCSCCSHHHHHHHHHHHT
T ss_pred             CCCcCCEEEEEeC--CccccceeecCCCCHHHHHHHHHHhc
Confidence            9999999999974  776  778889889888888877654

>3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae}

Probab=97.37  E-value=0.00055  Score=58.08  Aligned_cols=98  Identities=14%  Similarity=0.195  Sum_probs=65.0

Q ss_pred             hcCcEEEEEecCCCCccccccccccCCCHHHHHH---hccCcEEEEEeecCCC---CCCCChHHHHHH------------
Q 036413          144 DENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQT---IRASNFIFWQVYDDDD---DDDDDSECRKVC------------  205 (346)
Q Consensus       144 ~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~---i~~~nFVfw~~~~~~~---~~~~~~eg~~~~------------  205 (346)
                      -.+||+||++..+||..|. .-      +.+.++   +++.++.++.++.+..   +.+...+..+++            
T Consensus        30 ~~Gk~vll~F~a~wC~~C~-~~------~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~d~~~~~~~~~~~~~~~~~p~~~  102 (171)
T 3cmi_A           30 LKGKVVLIVNVASKCGFTP-QY------KELEALYKRYKDEGFTIIGFPCNQFGHQEPGSDEEIAQFCQLNYGVTFPIMK  102 (171)
T ss_dssp             GTTCEEEEEEEESSSCCHH-HH------HHHHHHHHHHGGGTEEEEEEEECSCC------------------CCCSCBBC
T ss_pred             cCCCEEEEEEEecCCCcch-hH------HHHHHHHHHhccCCeEEEEEECcccCCCCCCCHHHHHHHHHhccCCCceEEe
Confidence            3689999999999999998 42      233333   2225688888876310   000011112222            


Q ss_pred             ------------------hhcCCCCCc------eEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHHc
Q 036413          206 ------------------GYYKLDSLP------VVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMES  249 (346)
Q Consensus       206 ------------------~~y~~~~~P------~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~~  249 (346)
                                        ..|++..+|      ++.|||+ .|+.+..+.|..+++++.+.|.+.+..
T Consensus       103 d~d~~~~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~lid~-~G~i~~~~~g~~~~~~l~~~i~~ll~~  169 (171)
T 3cmi_A          103 KIDVNGGNEDPVYKFLKSQKSGMLGLRGIKWNFEKFLVDK-KGKVYERYSSLTKPSSLSETIEELLKE  169 (171)
T ss_dssp             CCBSSSTTBCHHHHHHHHHSCCSSSCCSCCSTTCEEEECS-SSCEEEEECTTSCGGGGHHHHHHHHTC
T ss_pred             eccCCCccchHHHHHHHhccCCcCCCCcccccceEEEECC-CCCEEEEeCCCCCHHHHHHHHHHHHHh
Confidence                              246777889      9999997 699999999988999898888887754

>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10

Probab=97.35  E-value=0.00045  Score=56.32  Aligned_cols=83  Identities=16%  Similarity=0.182  Sum_probs=59.1

Q ss_pred             HHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhc-cCcEEEEEeecCCCCCCCC--------------------
Q 036413          140 DVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIR-ASNFIFWQVYDDDDDDDDD--------------------  198 (346)
Q Consensus       140 ~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~-~~nFVfw~~~~~~~~~~~~--------------------  198 (346)
                      ..+.-++|++||++.++||..|+.+...+   ..+.+-++ +.++.+..++.+.     +                    
T Consensus        22 ~l~~~~gk~vll~F~a~wC~~C~~~~~~l---~~l~~~~~~~~~~~vv~i~~d~-----~~~~~~~~~~~~~~~~~~~~~   93 (144)
T 1o73_A           22 SLGSLVGKTVFLYFSASWCPPCRGFTPVL---AEFYEKHHVAKNFEVVLISWDE-----NESDFHDYYGKMPWLALPFDQ   93 (144)
T ss_dssp             CSGGGTTCEEEEEEECTTCHHHHHHHHHH---HHHHHHHTTTTTEEEEEEECCS-----SHHHHHHHHTTCSSEECCTTC
T ss_pred             cHHHhCCCEEEEEEECcCCHHHHHHHHHH---HHHHHHhccCCCEEEEEEeCCC-----CHHHHHHHHHhCCceEeeccc
Confidence            33445789999999999999998875332   11222222 1578888888872     2                    


Q ss_pred             -hHHHHHHhhcCCCCCceEEEEeCCCCceEEEE
Q 036413          199 -SECRKVCGYYKLDSLPVVLVIDPITGEKMRKW  230 (346)
Q Consensus       199 -~eg~~~~~~y~~~~~P~i~iidp~tge~l~~~  230 (346)
                       .....++..|++..+|++.|||+..|+.+...
T Consensus        94 ~~~~~~~~~~~~v~~~Pt~~lid~~~G~i~~~~  126 (144)
T 1o73_A           94 RSTVSELGKTFGVESIPTLITINADTGAIIGTQ  126 (144)
T ss_dssp             HHHHHHHHHHHTCCSSSEEEEEETTTCCEEESC
T ss_pred             hhHHHHHHHHcCCCCCCEEEEEECCCCeEEecc
Confidence             22567889999999999999995578877653

>2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A

Probab=97.33  E-value=0.00088  Score=56.03  Aligned_cols=101  Identities=11%  Similarity=0.197  Sum_probs=66.8

Q ss_pred             hcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCC---CCCCChHHHHHHh-hc-----------
Q 036413          144 DENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDD---DDDDDSECRKVCG-YY-----------  208 (346)
Q Consensus       144 ~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~---~~~~~~eg~~~~~-~y-----------  208 (346)
                      -.+||+||++-.+||..|...-..+   ..+.+-+++.++.++.++.+..   +.+...+...++. .|           
T Consensus        30 ~~gk~vll~f~a~~C~~C~~~~~~l---~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  106 (170)
T 2p5q_A           30 FKGKVLLIVNVASKCGMTNSNYAEM---NQLYEKYKDQGLEILAFPCNQFGEEEPGTNDQITDFVCTRFKSEFPIFDKID  106 (170)
T ss_dssp             GTTSEEEEEEECSSSTTHHHHHHHH---HHHHHHHGGGTEEEEEEECCTTTTCCCSCHHHHHHHHHHHTCCCSCBBCCCB
T ss_pred             hCCCEEEEEEEeccCCccHHHHHHH---HHHHHHhccCCEEEEEEECCCCCCCCCCCHHHHHHHHHHhcCCCceeEeeec
Confidence            3689999999999999998754332   1222222214688888877510   0011223344444 32           


Q ss_pred             ------------------CC--CCCc---eEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHH
Q 036413          209 ------------------KL--DSLP---VVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFME  248 (346)
Q Consensus       209 ------------------~~--~~~P---~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~  248 (346)
                                        ++  ..+|   ++.|||+ .|+.+.++.|..+++++.+.|.+.+.
T Consensus       107 ~~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~lid~-~G~i~~~~~g~~~~~~l~~~i~~ll~  168 (170)
T 2p5q_A          107 VNGENASPLYRFLKLGKWGIFGDDIQWNFAKFLVNK-DGQVVDRYYPTTSPLSLERDIKQLLE  168 (170)
T ss_dssp             SSSTTBCHHHHHHHTHHHHTTCSCCCSTTCEEEECT-TSCEEEEECTTSCGGGGHHHHHHHTT
T ss_pred             cCCCchHHHHHHHHhcCCCccCCcccccccEEEECC-CCCEEEeeCCCCCHHHHHHHHHHHhh
Confidence                              23  4578   9999997 69999999998888888888887664

>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei}

Probab=97.30  E-value=0.00069  Score=58.76  Aligned_cols=102  Identities=11%  Similarity=0.115  Sum_probs=67.6

Q ss_pred             hcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCC---CCCCChHHHHHH-hh------------
Q 036413          144 DENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDD---DDDDDSECRKVC-GY------------  207 (346)
Q Consensus       144 ~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~---~~~~~~eg~~~~-~~------------  207 (346)
                      -.+||+||++-.+||..|......+   ..+.+-+.+.++.++.++.+..   +.+...+..+++ ..            
T Consensus        46 ~~Gk~vll~F~atwC~~C~~~~~~l---~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~D  122 (190)
T 2vup_A           46 HKGSPLLIYNVASKCGYTKGGYETA---TTLYNKYKSQGFTVLAFPCNQFGGQEPGNEEEIKEFVCTKFKAEFPIMAKIN  122 (190)
T ss_dssp             GTTSCEEEEEECSSSTTHHHHHHHH---HHHHHHHGGGTCEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSCBBCCCB
T ss_pred             cCCCEEEEEEecCCCCccHHHHHHH---HHHHHHHhcCCeEEEEEEcCccCCCCCCCHHHHHHHHHHhcCCCeEEEeecc
Confidence            3689999999999999996553222   1122222214588888876510   001122333344 22            


Q ss_pred             -----------------cCCCCCc------eEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHHc
Q 036413          208 -----------------YKLDSLP------VVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMES  249 (346)
Q Consensus       208 -----------------y~~~~~P------~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~~  249 (346)
                                       |++..+|      ++.|||+ .|+.+..+.|..+++++.+.|.+.+..
T Consensus       123 ~~~~~~~~~~~~l~~~~~~v~~~P~i~~~~~~~lid~-~G~i~~~~~g~~~~~~l~~~i~~ll~~  186 (190)
T 2vup_A          123 VNGENAHPLYEYMKKTKPGILKTKAIKWNFTSFLIDR-DGVPVERFSPGASVKDIEKKLIPLLES  186 (190)
T ss_dssp             SSSTTBCHHHHHHHHHSCCGGGCCSCCSTTCEEEECT-TSCEEEEECTTCCHHHHHHHHHHHHHC
T ss_pred             cCcccccHHHHHHHhhcCCcCCCccccccceEEEECC-CCcEEEEECCCCCHHHHHHHHHHHHhh
Confidence                             3555678      9999996 699999999999999999999888864

>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A

Probab=97.28  E-value=0.00062  Score=56.72  Aligned_cols=91  Identities=8%  Similarity=-0.069  Sum_probs=63.3

Q ss_pred             cCc-EEEEEec-CCCCccccccccccCCCHHHHHHhc---cCcEEEEEeecCCCCCCCChH-------------------
Q 036413          145 ENK-WLLVNLQ-SPKEFTSHTLNRDTWADEAVSQTIR---ASNFIFWQVYDDDDDDDDDSE-------------------  200 (346)
Q Consensus       145 ~~K-~LlV~l~-~~~~f~c~~lnRdvw~~~~V~~~i~---~~nFVfw~~~~~~~~~~~~~e-------------------  200 (346)
                      .+| |++|++. ++||..|....      +.+.++.+   +.++.++.++.+      +++                   
T Consensus        34 ~gk~~vvl~F~~a~~C~~C~~~~------~~l~~~~~~~~~~~~~vv~is~d------~~~~~~~~~~~~~~~~~~~~d~  101 (160)
T 1xvw_A           34 RGAKNVLLVFFPLAFTGICQGEL------DQLRDHLPEFENDDSAALAISVG------PPPTHKIWATQSGFTFPLLSDF  101 (160)
T ss_dssp             TTTCEEEEEECSCTTSSHHHHHH------HHHHHTGGGTSSSSEEEEEEESC------CHHHHHHHHHHHTCCSCEEECT
T ss_pred             cCCCCEEEEEECCCCCCchHHHH------HHHHHHHHHHHHCCcEEEEEeCC------CHHHHHHHHHhcCCCceEEecC
Confidence            455 9999998 99999997653      34444433   247888888877      432                   


Q ss_pred             --HHHHHhhcCCC----CCc--eEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHH
Q 036413          201 --CRKVCGYYKLD----SLP--VVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFME  248 (346)
Q Consensus       201 --g~~~~~~y~~~----~~P--~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~  248 (346)
                        ...++..|++.    .+|  ++.|||+ .|+.+..+.|..+....++.|...++
T Consensus       102 ~~~~~~~~~~~v~~~~~~~p~~~~~lid~-~G~i~~~~~g~~~~~~~~~~l~~~l~  156 (160)
T 1xvw_A          102 WPHGAVSQAYGVFNEQAGIANRGTFVVDR-SGIIRFAEMKQPGEVRDQRLWTDALA  156 (160)
T ss_dssp             TTTTHHHHHTTCEETTTTEECSEEEEECT-TSBEEEEEECCTTCCCCHHHHHHHHH
T ss_pred             CcChHHHHHcCCccccCCCeeeeEEEECC-CCeEEEEEecCCCCCCCHHHHHHHHH
Confidence              45677888887    888  9999997 69999888886543333444444443

>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A

Probab=97.28  E-value=0.00056  Score=58.75  Aligned_cols=101  Identities=13%  Similarity=0.080  Sum_probs=67.1

Q ss_pred             hcCcEEEEEecCCCCccccccccccCCCHHHHHHhc--cCcEEEEEeecCCCCC--CCCh-------------------H
Q 036413          144 DENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIR--ASNFIFWQVYDDDDDD--DDDS-------------------E  200 (346)
Q Consensus       144 ~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~--~~nFVfw~~~~~~~~~--~~~~-------------------e  200 (346)
                      -.+|++||++.++||..|+..-      +.+.++.+  ...+.++.++.+....  +++.                   .
T Consensus        31 ~~gk~vlv~F~a~~C~~C~~~~------~~l~~l~~~~~~~~~~v~v~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~  104 (188)
T 2cvb_A           31 FHEPLLAVVFMCNHCPYVKGSI------GELVALAERYRGKVAFVGINANDYEKYPEDAPEKMAAFAEEHGIFFPYLLDE  104 (188)
T ss_dssp             CCSSEEEEEEECSSCHHHHTTH------HHHHHHHHHTTTTEEEEEEECCCTTTCGGGSHHHHHHHHHHHTCCSCEEECS
T ss_pred             hCCCEEEEEEECCCCccHHHHH------HHHHHHHHHhhcCeEEEEEEcCccccccccCHHHHHHHHHHhCCCceEEECC
Confidence            3579999999999999997653      33333332  0238888888751000  0011                   1


Q ss_pred             HHHHHhhcCCCCCceEEEEeCCCCceEEEE--------eCCCChHHHHHHHHHHHHcCC
Q 036413          201 CRKVCGYYKLDSLPVVLVIDPITGEKMRKW--------CGMVDPVSLLEDLLSFMESGP  251 (346)
Q Consensus       201 g~~~~~~y~~~~~P~i~iidp~tge~l~~~--------~G~~~~~~~i~~L~~fl~~~~  251 (346)
                      ...++..|++..+|++.|||+ .|+.+...        .|..+++++.+.|.+.+...+
T Consensus       105 ~~~~~~~~~v~~~P~~~lid~-~G~i~~~g~~~~~~~~~g~~~~~~l~~~i~~ll~~~~  162 (188)
T 2cvb_A          105 TQEVAKAYRALRTPEVFLFDE-RRLLRYHGRVNDNPKDPSKVQSHDLEAAIEALLRGEE  162 (188)
T ss_dssp             SSHHHHHTTCCEESEEEEECT-TCBEEEEECSSSCTTCGGGCCCCHHHHHHHHHHTTCC
T ss_pred             cchHHHHcCCCCCCeEEEECC-CCcEEEEEecCCccccccccCHHHHHHHHHHHHcCCC
Confidence            235677888999999999996 68877661        122367888888888876544

>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3

Probab=97.28  E-value=0.0003  Score=50.93  Aligned_cols=42  Identities=19%  Similarity=0.403  Sum_probs=39.6

Q ss_pred             hhHHHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhhc
Q 036413            8 KQRKRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNNN   50 (346)
Q Consensus         8 ~~~~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~~   50 (346)
                      ..+.++|..|+.. ||-+.+-|..+|+.++||++.|+..|-+.
T Consensus         5 ~~q~~mv~~~s~~-Tgmn~~~s~~cL~~~~Wd~~~A~~~F~~l   46 (59)
T 1oai_A            5 PEQQEMLQAFSTQ-SGMNLEWSQKCLQDNNWDYTRSAQAFTHL   46 (59)
T ss_dssp             HHHHHHHHHHHHH-HCCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH-HCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence            5788999999999 99999999999999999999999999873

>3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp}

Probab=97.27  E-value=0.0007  Score=55.24  Aligned_cols=88  Identities=14%  Similarity=0.138  Sum_probs=66.5

Q ss_pred             hhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHH-HHHHhhcCCC-CCceEEEE
Q 036413          142 GSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSEC-RKVCGYYKLD-SLPVVLVI  219 (346)
Q Consensus       142 Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg-~~~~~~y~~~-~~P~i~ii  219 (346)
                      ..+++|.++|+.|++||.+|.++.      +.+.++.++.+.-|+-+++++     ..+- ..++..|++. .-|.+.++
T Consensus        20 ii~~~~~vvi~khatwCgpc~~~~------~~~e~~~~~~~v~~~~vdVde-----~r~~Sn~IA~~~~V~h~sPq~il~   88 (112)
T 3iv4_A           20 VIEENKYVFVLKHSETCPISANAY------DQFNKFLYERDMDGYYLIVQQ-----ERDLSDYIAKKTNVKHESPQAFYF   88 (112)
T ss_dssp             HHHHCSEEEEEEECTTCHHHHHHH------HHHHHHHHHHTCCEEEEEGGG-----GHHHHHHHHHHHTCCCCSSEEEEE
T ss_pred             HHhcCCCEEEEEECCcCHhHHHHH------HHHHHHhccCCceEEEEEeec-----CchhhHHHHHHhCCccCCCeEEEE
Confidence            334499999999999999999984      555666543577788888882     2221 4588999998 59999999


Q ss_pred             eCCCCceEEEE-eCCCChHHHHHH
Q 036413          220 DPITGEKMRKW-CGMVDPVSLLED  242 (346)
Q Consensus       220 dp~tge~l~~~-~G~~~~~~~i~~  242 (346)
                      -  .|+.++.. .|.++.+.+.+.
T Consensus        89 k--~G~~v~~~SH~~I~~~~l~~~  110 (112)
T 3iv4_A           89 V--NGEMVWNRDHGDINVSSLAQA  110 (112)
T ss_dssp             E--TTEEEEEEEGGGCSHHHHHHH
T ss_pred             E--CCEEEEEeeccccCHHHHHHh
Confidence            6  69999874 567888765543

>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6

Probab=97.25  E-value=0.00039  Score=62.68  Aligned_cols=102  Identities=16%  Similarity=0.197  Sum_probs=71.7

Q ss_pred             cccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccC--cEEEEEeecCCCCCCCChHHHHHHhhc
Q 036413          131 FNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRAS--NFIFWQVYDDDDDDDDDSECRKVCGYY  208 (346)
Q Consensus       131 ~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~--nFVfw~~~~~~~~~~~~~eg~~~~~~y  208 (346)
                      -..+|.+++..+ ..+|+++|++..+||..|+.|.      +.+.++.. .  ++.|..++++         ...++..|
T Consensus       106 ~~~~f~~~v~~~-~~~k~vvV~F~a~wC~~C~~l~------p~l~~la~-~~~~v~f~~vd~~---------~~~l~~~~  168 (217)
T 2trc_P          106 TGEQFLETIEKE-QKVTTIVVNIYEDGVRGCDALN------SSLECLAA-EYPMVKFCKIRAS---------NTGAGDRF  168 (217)
T ss_dssp             SHHHHHHHHHHS-CTTCEEEEEEECTTSTTHHHHH------HHHHHHHT-TCTTSEEEEEEHH---------HHTCSTTS
T ss_pred             CHHHHHHHHHhc-CCCcEEEEEEECCCCccHHHHH------HHHHHHHH-HCCCeEEEEEECC---------cHHHHHHC
Confidence            345677766544 2469999999999999999995      44555554 3  4677776543         34577889


Q ss_pred             CCCCCceEEEEeCCCCceEEEEeCCCCh---HHHHHHHHHHHHcCC
Q 036413          209 KLDSLPVVLVIDPITGEKMRKWCGMVDP---VSLLEDLLSFMESGP  251 (346)
Q Consensus       209 ~~~~~P~i~iidp~tge~l~~~~G~~~~---~~~i~~L~~fl~~~~  251 (346)
                      ++..+|+++++.  .|+.+..+.|..+.   +-..+.|..+|..+-
T Consensus       169 ~i~~~PTl~~~~--~G~~v~~~~G~~~~~g~~~~~~~Le~~L~~~g  212 (217)
T 2trc_P          169 SSDVLPTLLVYK--GGELISNFISVAEQFAEDFFAADVESFLNEYG  212 (217)
T ss_dssp             CGGGCSEEEEEE--TTEEEEEETTGGGGSCSSCCHHHHHHHHHTTT
T ss_pred             CCCCCCEEEEEE--CCEEEEEEeCCcccCcccCCHHHHHHHHHHcC
Confidence            999999999996  69998888885442   112356677776543

>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=97.24  E-value=0.0011  Score=57.58  Aligned_cols=94  Identities=15%  Similarity=0.078  Sum_probs=67.2

Q ss_pred             cCcEEEEEec-CCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChH-----------------------
Q 036413          145 ENKWLLVNLQ-SPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSE-----------------------  200 (346)
Q Consensus       145 ~~K~LlV~l~-~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~e-----------------------  200 (346)
                      .+|++||++. .+||..|...-..+   ..+.+-+.+.++.++.++.+      +.+                       
T Consensus        44 ~gk~vvl~F~~a~~C~~C~~~~~~l---~~l~~~~~~~~v~vv~Vs~d------~~~~~~~~~~~~~~~~~~~~~~~~d~  114 (195)
T 2bmx_A           44 PGKWRVVFFWPKDFTFVCPTEIAAF---SKLNDEFEDRDAQILGVSID------SEFAHFQWRAQHNDLKTLPFPMLSDI  114 (195)
T ss_dssp             TTCEEEEEECSCTTSCCCHHHHHHH---HHTHHHHHTTTEEEEEEESS------CHHHHHHHHHHCTTGGGCCSCEEECT
T ss_pred             CCCcEEEEEEcCCCCCCcHHHHHHH---HHHHHHHHHCCCEEEEEECC------CHHHHHHHHHHhccccCCceeEEeCC
Confidence            5799999999 99999997653222   11222222247888888877      322                       


Q ss_pred             HHHHHhhcCCC-----CCceEEEEeCCCCceEEEEeCCC----ChHHHHHHHHHHHH
Q 036413          201 CRKVCGYYKLD-----SLPVVLVIDPITGEKMRKWCGMV----DPVSLLEDLLSFME  248 (346)
Q Consensus       201 g~~~~~~y~~~-----~~P~i~iidp~tge~l~~~~G~~----~~~~~i~~L~~fl~  248 (346)
                      ...++..|++.     .+|++.|||+ .|+.+..+.|..    +++++++.|...+.
T Consensus       115 ~~~~~~~~~v~~~~g~~~P~~~lid~-~G~i~~~~~g~~~~~~~~~~l~~~l~~l~~  170 (195)
T 2bmx_A          115 KRELSQAAGVLNADGVADRVTFIVDP-NNEIQFVSATAGSVGRNVDEVLRVLDALQS  170 (195)
T ss_dssp             TSHHHHHHTCBCTTSSBCEEEEEECT-TSBEEEEEEECTTCCCCHHHHHHHHHHHHC
T ss_pred             chHHHHHhCCcccCCCccceEEEEcC-CCeEEEEEecCCCCCCCHHHHHHHHHHHhh
Confidence            23466778887     8999999996 699998888754    67888888877664

>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens}

Probab=97.23  E-value=0.00057  Score=55.78  Aligned_cols=107  Identities=16%  Similarity=0.275  Sum_probs=73.2

Q ss_pred             cCCCcccccccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhc-cCcEEEEEeecCCCCCCCChHH
Q 036413          123 YRPPVDLMFNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIR-ASNFIFWQVYDDDDDDDDDSEC  201 (346)
Q Consensus       123 f~PP~~l~~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~-~~nFVfw~~~~~~~~~~~~~eg  201 (346)
                      |+-..++ -..+|.+++..+ ..+++++|+++.+||.+|+.|.      +.+.++-+ -.+..|..++++      ..  
T Consensus         2 ~G~v~~i-t~~~f~~~v~~~-~~~~~vvv~F~a~wc~~C~~~~------p~l~~la~~~~~v~f~kvd~d------~~--   65 (118)
T 3evi_A            2 FGELREI-SGNQYVNEVTNA-EEDVWVIIHLYRSSIPMCLLVN------QHLSLLARKFPETKFVKAIVN------SC--   65 (118)
T ss_dssp             CCSCEEC-CGGGHHHHTTTC-CTTCEEEEEEECTTSHHHHHHH------HHHHHHHHHCTTSEEEEEEGG------GT--
T ss_pred             CcceEEe-CHHHHHHHHHhc-CCCCeEEEEEeCCCChHHHHHH------HHHHHHHHHCCCCEEEEEEhH------Hh--
Confidence            3333443 455677666433 2356999999999999999995      55555544 024678888888      32  


Q ss_pred             HHHHhhcCCCCCceEEEEeCCCCceEEEEeCCCCh--HH-HHHHHHHHHHcC
Q 036413          202 RKVCGYYKLDSLPVVLVIDPITGEKMRKWCGMVDP--VS-LLEDLLSFMESG  250 (346)
Q Consensus       202 ~~~~~~y~~~~~P~i~iidp~tge~l~~~~G~~~~--~~-~i~~L~~fl~~~  250 (346)
                         +..|++.+.|++++.-  .|+.+.++.|..+-  .+ -.+.|..+|.+.
T Consensus        66 ---~~~~~v~~~PT~~~fk--~G~~v~~~~G~~~~gg~~~~~~~le~~L~~~  112 (118)
T 3evi_A           66 ---IQHYHDNCLPTIFVYK--NGQIEAKFIGIIECGGINLKLEELEWKLAEV  112 (118)
T ss_dssp             ---STTCCGGGCSEEEEEE--TTEEEEEEESTTTTTCSSCCHHHHHHHHHTT
T ss_pred             ---HHHCCCCCCCEEEEEE--CCEEEEEEeChhhhCCCCCCHHHHHHHHHHc
Confidence               5789999999999997  69999999885421  11 245666666553

>1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10

Probab=97.22  E-value=0.00097  Score=58.08  Aligned_cols=93  Identities=13%  Similarity=0.091  Sum_probs=66.1

Q ss_pred             cCcEEEEEec-CCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChH-----------------------
Q 036413          145 ENKWLLVNLQ-SPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSE-----------------------  200 (346)
Q Consensus       145 ~~K~LlV~l~-~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~e-----------------------  200 (346)
                      .+|+++|++. .+||..|...-..+  .....+|-. .++.++.++.+      +++                       
T Consensus        32 ~gk~vvl~F~~a~~C~~C~~~~~~l--~~l~~~~~~-~~v~vv~Is~d------~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (198)
T 1zof_A           32 GKNGVILFFWPKDFTFVCPTEIIAF--DKRVKDFHE-KGFNVIGVSID------SEQVHFAWKNTPVEKGGIGQVSFPMV  102 (198)
T ss_dssp             CSSEEEEEECSCTTCSSCCTHHHHH--HHTHHHHHH-TTEEEEEEESS------CHHHHHHHHTSCGGGTCCCCCSSCEE
T ss_pred             CCCcEEEEEECCCCCCchHHHHHHH--HHHHHHHHH-cCCEEEEEECC------CHHHHHHHHHhhhhcccccCceeEEE
Confidence            6899999999 89999997663322  111222333 57888888877      322                       


Q ss_pred             ---HHHHHhhcCCC-----CCceEEEEeCCCCceEEEEeCCC----ChHHHHHHHHHHH
Q 036413          201 ---CRKVCGYYKLD-----SLPVVLVIDPITGEKMRKWCGMV----DPVSLLEDLLSFM  247 (346)
Q Consensus       201 ---g~~~~~~y~~~-----~~P~i~iidp~tge~l~~~~G~~----~~~~~i~~L~~fl  247 (346)
                         ...++..|++.     .+|++.|||+ .|+.+..+.|..    +++++++.|....
T Consensus       103 ~d~~~~~~~~~~v~~~~g~~~P~~~lid~-~G~i~~~~~g~~~~~~~~~~l~~~l~~l~  160 (198)
T 1zof_A          103 ADITKSISRDYDVLFEEAIALRGAFLIDK-NMKVRHAVINDLPLGRNADEMLRMVDALL  160 (198)
T ss_dssp             ECTTSHHHHHTTCEETTTEECEEEEEEET-TTEEEEEEEESSSCCCHHHHHHHHHHHHH
T ss_pred             ECCchHHHHHhCCcccCCcccceEEEECC-CCEEEEEEecCCCCCCCHHHHHHHHHHHH
Confidence               24567788887     8999999997 699998888855    5667777766654

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A

Probab=97.22  E-value=0.0013  Score=58.29  Aligned_cols=100  Identities=10%  Similarity=0.230  Sum_probs=71.9

Q ss_pred             ccccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccC--cEEEEEeecCCCCCCCChHHHHHHhh
Q 036413          130 MFNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRAS--NFIFWQVYDDDDDDDDDSECRKVCGY  207 (346)
Q Consensus       130 ~~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~--nFVfw~~~~~~~~~~~~~eg~~~~~~  207 (346)
                      +-..+|++++.    .+|.++|++.++||..|+.+...+   ..+.+-++..  ++.|..++.+      ..  ..++..
T Consensus       135 ~~~~~~~~~~~----~~~~~~v~f~a~wC~~C~~~~p~~---~~~a~~~~~~~~~v~~~~vd~~------~~--~~l~~~  199 (241)
T 3idv_A          135 LTKENFDEVVN----DADIILVEFYAPWCGHCKKLAPEY---EKAAKELSKRSPPIPLAKVDAT------AE--TDLAKR  199 (241)
T ss_dssp             CCTTTHHHHHH----HCSEEEEEEECTTCTGGGGTHHHH---HHHHHHHHTSSSCCCEEEEETT------TC--HHHHHH
T ss_pred             ccHHHHHHhhc----cCCeEEEEEECCCCHHHHHhHHHH---HHHHHHHhccCCcEEEEEEECC------CC--HHHHHH
Confidence            34567777763    467999999999999999884322   2233333302  2788888777      22  468999


Q ss_pred             cCCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHH
Q 036413          208 YKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFM  247 (346)
Q Consensus       208 y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl  247 (346)
                      |++..+|++.++..  |+.+. ..|..+.+.+++.|.+.+
T Consensus       200 ~~v~~~Pt~~~~~~--g~~~~-~~g~~~~~~l~~~l~~~~  236 (241)
T 3idv_A          200 FDVSGYPTLKIFRK--GRPYD-YNGPREKYGIVDYMIEQS  236 (241)
T ss_dssp             TTCCSSSEEEEEET--TEEEE-CCSCCSHHHHHHHHHHHT
T ss_pred             cCCcccCEEEEEEC--CeEEE-ecCCCCHHHHHHHHHhhh
Confidence            99999999999983  77665 789888887777776654

>2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A

Probab=97.21  E-value=0.0017  Score=54.26  Aligned_cols=102  Identities=12%  Similarity=0.138  Sum_probs=64.8

Q ss_pred             hcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCC--CCCCC-hHHHHH-Hhhc-----------
Q 036413          144 DENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDD--DDDDD-SECRKV-CGYY-----------  208 (346)
Q Consensus       144 ~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~--~~~~~-~eg~~~-~~~y-----------  208 (346)
                      -.+||+||++-.+||..|...-..+  ++...+|-. .++.++.++.+..  ...++ .+...+ ...|           
T Consensus        29 ~~gk~vlv~f~a~~C~~C~~~~~~l--~~l~~~~~~-~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  105 (169)
T 2v1m_A           29 YRGHVCLIVNVACKCGATDKNYRQL--QEMHTRLVG-KGLRILAFPCNQFGGQEPWAEAEIKKFVTEKYGVQFDMFSKIK  105 (169)
T ss_dssp             GTTSEEEEEEECSSSTTHHHHHHHH--HHHHHHHGG-GTEEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSEEBCCCC
T ss_pred             cCCCEEEEEEeeccCCchHHHHHHH--HHHHHHhhc-CCeEEEEEECCccCCCCCCCHHHHHHHHHHhcCCCCceEEEEe
Confidence            3589999999999999996553222  111222222 4688888776510  00001 223334 1222           


Q ss_pred             ------------------C-----CCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHHc
Q 036413          209 ------------------K-----LDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMES  249 (346)
Q Consensus       209 ------------------~-----~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~~  249 (346)
                                        +     +..+|++.|||+ .|+.+..+.|..+++++.+.|.+.+..
T Consensus       106 ~~~~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lid~-~G~i~~~~~g~~~~~~l~~~i~~ll~~  168 (169)
T 2v1m_A          106 VNGSDADDLYKFLKSRQHGTLTNNIKWNFSKFLVDR-QGQPVKRYSPTTAPYDIEGDIMELLEK  168 (169)
T ss_dssp             CSSTTSCHHHHHHHHHSCCSSSCSCCSTTCEEEECT-TSCEEEEECTTSCGGGGHHHHHHHHHC
T ss_pred             ecCccccHHHHHHHhhcCCccCCcccccceEEEECC-CCCEEEEcCCCCCHHHHHHHHHHHhcc
Confidence                              2     233589999996 699999999988999888888887753

>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A

Probab=97.20  E-value=0.0013  Score=62.60  Aligned_cols=96  Identities=16%  Similarity=0.165  Sum_probs=69.6

Q ss_pred             ccCHHHHHHHhhhcCcEEEEEecCCCCcccccccccc------CCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHH
Q 036413          132 NGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDT------WADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVC  205 (346)
Q Consensus       132 ~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdv------w~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~  205 (346)
                      ..+|++++    ++++.+||++.++||. |+.+....      |  +.+.+.++..++.|..++.+      ..  ..++
T Consensus        18 ~~~f~~~i----~~~~~~lV~F~a~wC~-c~~~~p~~~~~~~~~--~~~a~~~~~~~v~~~~Vd~~------~~--~~l~   82 (350)
T 1sji_A           18 EKNFKQVL----KKYDVLCLYYHESVSS-DKVAQKQFQLKEIVL--ELVAQVLEHKDIGFVMVDAK------KE--AKLA   82 (350)
T ss_dssp             HHHHHHHH----TTCSEEEEEEECCSCS-SSTTSHHHHHHHHHH--HHHHHHGGGSSEEEEEEETT------TT--HHHH
T ss_pred             HHHHHHHH----hhCCeEEEEEECCCCc-chhhCchhhhhhHHH--HHHHHHHhhcCcEEEEEeCC------CC--HHHH
Confidence            44576665    4579999999999999 86663321      3  24556666136999999888      32  5699


Q ss_pred             hhcCCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHH
Q 036413          206 GYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLS  245 (346)
Q Consensus       206 ~~y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~  245 (346)
                      +.|++..||++.++.  .|+ .....|..+.+.+++.|.+
T Consensus        83 ~~~~v~~~Pt~~~~~--~g~-~~~~~G~~~~~~l~~~i~~  119 (350)
T 1sji_A           83 KKLGFDEEGSLYVLK--GDR-TIEFDGEFAADVLVEFLLD  119 (350)
T ss_dssp             HHHTCCSTTEEEEEE--TTE-EEEECSCCCHHHHHHHHHT
T ss_pred             HhcCCCccceEEEEE--CCc-EEEecCCCCHHHHHHHHHH
Confidence            999999999999994  577 5577898887766655543

>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis}

Probab=97.20  E-value=0.00028  Score=57.82  Aligned_cols=88  Identities=16%  Similarity=0.201  Sum_probs=62.2

Q ss_pred             HhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhc---cCcEEEEEeecCCCCCCCChH-----------------
Q 036413          141 VGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIR---ASNFIFWQVYDDDDDDDDDSE-----------------  200 (346)
Q Consensus       141 ~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~---~~nFVfw~~~~~~~~~~~~~e-----------------  200 (346)
                      .+.-.+|++||++-.+||..|....      +.+.++.+   +.++.++.++.+.     +.+                 
T Consensus        27 l~~~~gk~vll~F~a~wC~~C~~~~------~~l~~l~~~~~~~~~~vv~vs~d~-----~~~~~~~~~~~~~~~~~~~~   95 (143)
T 4fo5_A           27 FHNQLGRYTLLNFWAAYDAESRARN------VQLANEVNKFGPDKIAMCSISMDE-----KESIFTETVKIDKLDLSTQF   95 (143)
T ss_dssp             SCCSSCCEEEEEEECTTCHHHHHHH------HHHHHHHTTSCTTTEEEEEEECCS-----CHHHHHHHHHHHTCCGGGEE
T ss_pred             HHHhCCCEEEEEEEcCcCHHHHHHH------HHHHHHHHHhCcCCEEEEEEEccC-----CHHHHHHHHHHhCCCCceee
Confidence            3344689999999999999998774      55555554   2468888888772     111                 


Q ss_pred             ------HHHHHhhcCCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHH
Q 036413          201 ------CRKVCGYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDL  243 (346)
Q Consensus       201 ------g~~~~~~y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L  243 (346)
                            ...++..|++..+|++.|||+ .|+.+.+.   +.++++.+.|
T Consensus        96 ~d~~~~~~~~~~~~~v~~~P~~~lid~-~G~i~~~~---~~~~~l~~~l  140 (143)
T 4fo5_A           96 HEGLGKESELYKKYDLRKGFKNFLIND-EGVIIAAN---VTPEKLTEIL  140 (143)
T ss_dssp             ECTTGGGSHHHHHTTGGGCCCEEEECT-TSBEEEES---CCHHHHHHHH
T ss_pred             ecccccchHHHHHcCCCCCCcEEEECC-CCEEEEcc---CCHHHHHHHH
Confidence                  135778899999999999997 68887664   3455444433

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A

Probab=97.20  E-value=0.00083  Score=66.53  Aligned_cols=102  Identities=14%  Similarity=0.228  Sum_probs=76.0

Q ss_pred             ccccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccC--cEEEEEeecCCCCCCCChHHHHHHhh
Q 036413          130 MFNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRAS--NFIFWQVYDDDDDDDDDSECRKVCGY  207 (346)
Q Consensus       130 ~~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~--nFVfw~~~~~~~~~~~~~eg~~~~~~  207 (346)
                      +-..+|+++.   ...+|.+||++.++||..|+.+...+   ..+.+.+. .  +++|..++.+      ..   .++..
T Consensus       357 ~~~~~~~~~~---~~~~k~vlv~f~a~wC~~C~~~~p~~---~~l~~~~~-~~~~v~~~~id~~------~~---~~~~~  420 (481)
T 3f8u_A          357 VVAENFDEIV---NNENKDVLIEFYAPWCGHCKNLEPKY---KELGEKLS-KDPNIVIAKMDAT------AN---DVPSP  420 (481)
T ss_dssp             ECTTTHHHHH---TCTTCEEEEEEECTTBHHHHHHHHHH---HHHHHHTT-TCSSEEEEEEETT------SS---CCCTT
T ss_pred             ecccCHHHHh---hcCCCcEEEEEecCcChhHHHhhHHH---HHHHHHhc-cCCCEEEEEEECC------ch---hhHhh
Confidence            4456777665   45789999999999999999996443   44555555 4  7999999888      33   46778


Q ss_pred             cCCCCCceEEEEeCCCCc-eEEEEeCCCChHHHHHHHHHHHH
Q 036413          208 YKLDSLPVVLVIDPITGE-KMRKWCGMVDPVSLLEDLLSFME  248 (346)
Q Consensus       208 y~~~~~P~i~iidp~tge-~l~~~~G~~~~~~~i~~L~~fl~  248 (346)
                      |++..+|++.+++. .|+ ......|..+.++|++.|.+.+.
T Consensus       421 ~~v~~~Pt~~~~~~-~~~~~~~~~~G~~~~~~l~~~l~~~~~  461 (481)
T 3f8u_A          421 YEVRGFPTIYFSPA-NKKLNPKKYEGGRELSDFISYLQREAT  461 (481)
T ss_dssp             CCCCSSSEEEEECT-TCTTSCEECCSCCSHHHHHHHHHHHCS
T ss_pred             CCCcccCEEEEEeC-CCeEeeeEeCCCCCHHHHHHHHHHhcC
Confidence            99999999999984 344 26677898888877777766543

>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10

Probab=97.20  E-value=0.0012  Score=56.84  Aligned_cols=94  Identities=15%  Similarity=0.180  Sum_probs=67.5

Q ss_pred             cCcEEEEEec-CCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChH-----------------------
Q 036413          145 ENKWLLVNLQ-SPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSE-----------------------  200 (346)
Q Consensus       145 ~~K~LlV~l~-~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~e-----------------------  200 (346)
                      .+|++||++. .+||..|...-..+  +....+|=. .++.++.++.+      +++                       
T Consensus        30 ~gk~vvl~F~~a~~C~~C~~~~~~l--~~~~~~~~~-~~v~vv~vs~d------~~~~~~~~~~~~~~~~~~~~~~~~d~  100 (187)
T 1we0_A           30 KGKWSIVVFYPADFSFVCPTELEDV--QKEYAELKK-LGVEVYSVSTD------THFVHKAWHENSPAVGSIEYIMIGDP  100 (187)
T ss_dssp             SSSEEEEEECSCTTCSSCTHHHHHH--HHHHHHHHH-TTEEEEEEESS------CHHHHHHHHHSCHHHHTCCSEEEECT
T ss_pred             CCCCEEEEEECCCCCcchHHHHHHH--HHHHHHHHH-cCCEEEEEECC------CHHHHHHHHHHhccccCCCceEEECC
Confidence            5799999999 99999998653222  111222223 47888888877      321                       


Q ss_pred             HHHHHhhcCCC------CCceEEEEeCCCCceEEEEeCCC----ChHHHHHHHHHHHH
Q 036413          201 CRKVCGYYKLD------SLPVVLVIDPITGEKMRKWCGMV----DPVSLLEDLLSFME  248 (346)
Q Consensus       201 g~~~~~~y~~~------~~P~i~iidp~tge~l~~~~G~~----~~~~~i~~L~~fl~  248 (346)
                      ...++..|++.      .+|++.|||+ .|..+..+.|..    +++++++.|.....
T Consensus       101 ~~~~~~~~~v~~~~~g~~~P~~~lid~-~G~i~~~~~g~~~~~~~~~~l~~~l~~l~~  157 (187)
T 1we0_A          101 SQTISRQFDVLNEETGLADRGTFIIDP-DGVIQAIEINADGIGRDASTLINKVKAAQY  157 (187)
T ss_dssp             TCHHHHHTTCEETTTTEECEEEEEECT-TSBEEEEEEECTTSCCCTTHHHHHHHHHHH
T ss_pred             chHHHHHhCCCcCCCCceeeEEEEECC-CCeEEEEEecCCCCCCCHHHHHHHHHHHhh
Confidence            24566778887      8999999996 699998888854    67888888887664

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A

Probab=97.19  E-value=0.00069  Score=64.46  Aligned_cols=101  Identities=19%  Similarity=0.254  Sum_probs=72.0

Q ss_pred             ccccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhc-cCcEEEEEeecCCCCCCCChHHHHHHhhc
Q 036413          130 MFNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIR-ASNFIFWQVYDDDDDDDDDSECRKVCGYY  208 (346)
Q Consensus       130 ~~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~-~~nFVfw~~~~~~~~~~~~~eg~~~~~~y  208 (346)
                      +-..+|++..   ...+|.+||++.++||..|+.+...+   ..+.+.++ ..++++..++.+      ...    +..|
T Consensus       254 l~~~~f~~~~---~~~~k~~lv~f~a~wC~~C~~~~p~~---~~la~~~~~~~~v~~~~vd~~------~~~----~~~~  317 (361)
T 3uem_A          254 LVGKNFEDVA---FDEKKNVFVEFYAPWCGHCKQLAPIW---DKLGETYKDHENIVIAKMDST------ANE----VEAV  317 (361)
T ss_dssp             ECTTTHHHHH---TCTTCEEEEEEECTTCHHHHHHHHHH---HHHHHHTTTCSSEEEEEEETT------TCB----CSSC
T ss_pred             eecCchhhhc---ccCCCcEEEEEecCcCHhHHHHHHHH---HHHHHHhccCCcEEEEEEECC------ccc----hhhc
Confidence            3345677655   45689999999999999999985332   33444444 125999999888      333    6789


Q ss_pred             CCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHHcC
Q 036413          209 KLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMESG  250 (346)
Q Consensus       209 ~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~~~  250 (346)
                      ++..||++.++..-.|+.+....|..+.++|+    +||+.+
T Consensus       318 ~v~~~Pt~~~~~~~~~~~~~~~~G~~~~~~l~----~~l~~~  355 (361)
T 3uem_A          318 KVHSFPTLKFFPASADRTVIDYNGERTLDGFK----KFLESG  355 (361)
T ss_dssp             CCCSSSEEEEECSSSSCCCEECCSCSSHHHHH----HHHTTT
T ss_pred             CCcccCeEEEEECCCCcceeEecCCCCHHHHH----HHHHhc
Confidence            99999999999754456677788988876554    455544

>2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus}

Probab=97.15  E-value=0.0009  Score=56.07  Aligned_cols=93  Identities=15%  Similarity=0.138  Sum_probs=64.2

Q ss_pred             hhcCcEEEEEecCCCCcc-ccccccccCCCHHHHHHhc---c---CcEEEEEeecCCCCCCCChH-H-------------
Q 036413          143 SDENKWLLVNLQSPKEFT-SHTLNRDTWADEAVSQTIR---A---SNFIFWQVYDDDDDDDDDSE-C-------------  201 (346)
Q Consensus       143 k~~~K~LlV~l~~~~~f~-c~~lnRdvw~~~~V~~~i~---~---~nFVfw~~~~~~~~~~~~~e-g-------------  201 (346)
                      .-.+||+||++-.+||.+ |....      +.+.++.+   +   .++.++.++++.  ..++++ .             
T Consensus        32 ~~~gk~vll~f~~~~C~~~C~~~~------~~l~~~~~~~~~~~~~~v~vv~is~d~--~~d~~~~~~~~~~~~~~~~~~  103 (172)
T 2k6v_A           32 QFQDKVVLLFFGFTRCPDVCPTTL------LALKRAYEKLPPKAQERVQVIFVSVDP--ERDPPEVADRYAKAFHPSFLG  103 (172)
T ss_dssp             GSTTSEEEEEEECTTCSSHHHHHH------HHHHHHHTTSCHHHHTTEEEEEEESCT--TTCCHHHHHHHHHHHCTTEEE
T ss_pred             HhCCCEEEEEEECCCCcchhHHHH------HHHHHHHHHhhhhccCCEEEEEEEECC--CCCCHHHHHHHHHHhCCCcEE
Confidence            346899999999999997 97663      44444443   1   168888888762  111222 1             


Q ss_pred             --------HHHHhhcCC---------------CCCceEEEEeCCCCceEEEEeCCC--ChHHHHHHHHH
Q 036413          202 --------RKVCGYYKL---------------DSLPVVLVIDPITGEKMRKWCGMV--DPVSLLEDLLS  245 (346)
Q Consensus       202 --------~~~~~~y~~---------------~~~P~i~iidp~tge~l~~~~G~~--~~~~~i~~L~~  245 (346)
                              ..+++.|++               ...|++.|||  .|+.+..+.|..  +++++++.|.+
T Consensus       104 l~d~~~~~~~~~~~~gv~~~~~~~~~~~~~~i~~~P~~~lid--~G~i~~~~~g~~~~~~~~l~~~l~~  170 (172)
T 2k6v_A          104 LSGSPEAVREAAQTFGVFYQKSQYRGPGEYLVDHTATTFVVK--EGRLVLLYSPDKAEATDRVVADLQA  170 (172)
T ss_dssp             ECCCHHHHHHHHHHHTCCEEEEEEEETTEEEEEECCCEEEEE--TTEEEEEECHHHHTCHHHHHHHHHH
T ss_pred             EeCCHHHHHHHHHhcCeEEEeccCCCCCCceEecCCEEEEEE--CCEEEEEECCCCCCCHHHHHHHHHH
Confidence                    345555543               4679999999  699999988876  88888877765

>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A

Probab=97.07  E-value=0.0018  Score=62.48  Aligned_cols=103  Identities=17%  Similarity=0.142  Sum_probs=75.1

Q ss_pred             ccccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccC----CCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHH
Q 036413          130 MFNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTW----ADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVC  205 (346)
Q Consensus       130 ~~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw----~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~  205 (346)
                      +-..+|++++    +.++++||+++.+||..| .+|+.+-    .-+.+.+.++..++.|..++.+      .  ...+|
T Consensus        18 lt~~~f~~~i----~~~~~vlV~FyApWC~~~-~~~~~l~~~~p~~e~~a~~~~~~~v~~~~Vd~~------~--~~~l~   84 (367)
T 3us3_A           18 VNAKNYKNVF----KKYEVLALLYHEPPEDDK-ASQRQFEMEELILELAAQVLEDKGVGFGLVDSE------K--DAAVA   84 (367)
T ss_dssp             CCTTTHHHHH----HHCSEEEEEEECCCCSSH-HHHHHHHHHHHHHHHHHHHHTTTTEEEEEEETT------T--THHHH
T ss_pred             CCHHHHHHHH----hhCCeEEEEEECCCchhH-HHhhhhccccHHHHHHHHHhhcCCceEEEEeCc------c--cHHHH
Confidence            4467898887    347999999999999876 5544110    1134555555136999999887      3  25699


Q ss_pred             hhcCCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHH
Q 036413          206 GYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFME  248 (346)
Q Consensus       206 ~~y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~  248 (346)
                      +.|++..||++.++.  .|+. ....|..+.+.+++.|.+.+.
T Consensus        85 ~~~~V~~~PTl~~f~--~G~~-~~y~G~~~~~~i~~~i~~~~~  124 (367)
T 3us3_A           85 KKLGLTEEDSIYVFK--EDEV-IEYDGEFSADTLVEFLLDVLE  124 (367)
T ss_dssp             HHHTCCSTTEEEEEE--TTEE-EECCSCCSHHHHHHHHHHHHS
T ss_pred             HHcCCCcCceEEEEE--CCcE-EEeCCCCCHHHHHHHHHHhcC
Confidence            999999999999998  4765 467898898888877776553

>3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidor peroxidase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A

Probab=97.06  E-value=0.0019  Score=55.82  Aligned_cols=99  Identities=12%  Similarity=0.182  Sum_probs=65.1

Q ss_pred             hcCcEEEEEecCCCCccccccccccCCCHHHHHHh---ccCcEEEEEeecCC---CCCCCChHHHHHHh-----------
Q 036413          144 DENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTI---RASNFIFWQVYDDD---DDDDDDSECRKVCG-----------  206 (346)
Q Consensus       144 ~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i---~~~nFVfw~~~~~~---~~~~~~~eg~~~~~-----------  206 (346)
                      -++|++||++-.+||..|...-      +.+.++.   ++.++.++.++++.   .+.+...+-.+++.           
T Consensus        44 ~~Gk~vlv~F~atwC~~C~~~~------p~l~~l~~~~~~~~~~vi~is~d~~~~~e~~~~~~~~~~~~~~~~~~~p~~~  117 (187)
T 3dwv_A           44 HKGSPLLIYNVASKCGYTKGGY------ETATTLYNKYKSQGFTVLAFPSNQFGGQEPGNEEEIKEFVCTKFKAEFPIMA  117 (187)
T ss_dssp             GTTSCEEEEEECCBCSCCTTHH------HHHHHHHHHHGGGTCEEEEEEBCCCSSCSSSBTTHHHHSCCBCCCCSSCBBC
T ss_pred             hCCCEEEEEEecCCCCCcHHHH------HHHHHHHHHhhhCCeEEEEEECcccCCCCCCCHHHHHHHHHhccCCCCceee
Confidence            3689999999999999998753      2333332   22468888877651   00011122222222           


Q ss_pred             ----------------------hcCCCCCc---eEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHHc
Q 036413          207 ----------------------YYKLDSLP---VVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMES  249 (346)
Q Consensus       207 ----------------------~y~~~~~P---~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~~  249 (346)
                                            .|.+..+|   ++.|||+ .|..+..+.|..+++++.+.|.+.|..
T Consensus       118 ~~d~~~~~~~~~~~~l~~~~~~~~~~~~iP~~~~~~liD~-~G~i~~~~~g~~~~~~l~~~i~~lL~~  184 (187)
T 3dwv_A          118 KINVNGENAHPLYEYMKKTKPGILATKAIKWNFTSFLIDR-DGVPVERFSPGASVKDIEEKLIPLLGS  184 (187)
T ss_dssp             CBCCSCC-CCHHHHHHHHHSCCSBSSSSCCSTTCEEEECT-TSCEEEEECTTCCHHHHHHHHHHHC--
T ss_pred             ccccCCcchhHHHHHHHhhcCCccCCCccccceeEEEECC-CCCEEEEECCCCCHHHHHHHHHHHHhc
Confidence                                  22334677   9999997 699999999999999999888887764

>2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10

Probab=97.03  E-value=0.0023  Score=55.43  Aligned_cols=93  Identities=14%  Similarity=0.131  Sum_probs=65.5

Q ss_pred             cCcEEEEEec-CCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChH-----------------------
Q 036413          145 ENKWLLVNLQ-SPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSE-----------------------  200 (346)
Q Consensus       145 ~~K~LlV~l~-~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~e-----------------------  200 (346)
                      .+||++|++. .++|..|......+  ++...+|-. .++.++.++.+      +.+                       
T Consensus        30 ~gk~vvl~F~~a~~C~~C~~~~~~l--~~~~~~~~~-~~v~vv~Is~d------~~~~~~~~~~~~~~~~~~~~~~~~~l  100 (192)
T 2h01_A           30 GKKYVLLYFYPLDFTFVCPSEIIAL--DKALDSFKE-RNVELLGCSVD------SKFTHLAWKKTPLSQGGIGNIKHTLI  100 (192)
T ss_dssp             TTCEEEEEECSCSSCSSCCHHHHHH--HHTHHHHHH-TTEEEEEEESS------CHHHHHHHHTSCGGGTCCCSCSSEEE
T ss_pred             CCCeEEEEEECCCCCCCCHHHHHHH--HHHHHHHHH-CCCEEEEEEeC------CHHHHHHHHHhHHhhCCccCCCcCeE
Confidence            5799999999 99999998653222  112223333 67888888877      332                       


Q ss_pred             ---HHHHHhhcCCC-----CCceEEEEeCCCCceEEEEeCCC----ChHHHHHHHHHHH
Q 036413          201 ---CRKVCGYYKLD-----SLPVVLVIDPITGEKMRKWCGMV----DPVSLLEDLLSFM  247 (346)
Q Consensus       201 ---g~~~~~~y~~~-----~~P~i~iidp~tge~l~~~~G~~----~~~~~i~~L~~fl  247 (346)
                         ...++..|++.     .+|++.|||+ .|..+..+.|..    +.+++++.|....
T Consensus       101 ~D~~~~~~~~~gv~~~~g~~~P~~~liD~-~G~i~~~~~g~~~~~~~~~~l~~~l~~l~  158 (192)
T 2h01_A          101 SDISKSIARSYDVLFNESVALRAFVLIDK-QGVVQHLLVNNLALGRSVDEILRLIDALQ  158 (192)
T ss_dssp             ECTTSHHHHHTTCEETTTEECCEEEEECT-TSBEEEEEEGGGSSGGGHHHHHHHHHHHH
T ss_pred             ECCcHHHHHHhCCcCcCCceeeEEEEEcC-CCEEEEEEeCCCCCCCCHHHHHHHHHHHh
Confidence               23577788887     8999999997 699888887743    3677777776654

>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP}

Probab=97.01  E-value=0.00037  Score=55.56  Aligned_cols=85  Identities=9%  Similarity=0.057  Sum_probs=57.6

Q ss_pred             HHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCCh--HHHHHHhhcCCCCCc
Q 036413          137 KAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDS--ECRKVCGYYKLDSLP  214 (346)
Q Consensus       137 ~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~--eg~~~~~~y~~~~~P  214 (346)
                      +++..|+..+|..+|++.++||..|+.+.      +.+.++-+  .|-+.-++.+      ..  +...++..|++..+|
T Consensus         3 ~~~~la~~~~k~~vV~F~A~WC~~C~~~~------p~~~~~a~--~~~~v~~~~~------~~~~~~~~l~~~~~V~~~P   68 (106)
T 3kp8_A            3 LAVGLAAHLRQIGGTMYGAYWCPHCQDQK------ELFGAAFD--QVPYVECSPN------GPGTPQAQECTEAGITSYP   68 (106)
T ss_dssp             HHHHHHHHHHHHTCEEEECTTCHHHHHHH------HHHGGGGG--GSCEEESCTT------CTTSCCCHHHHHTTCCSSS
T ss_pred             HhhHHHHhcCCCEEEEEECCCCHHHHHHH------HHHHHHHH--hCCEEEEecc------cccchhHHHHHHcCCeEeC
Confidence            35566777778889999999999999983      33333333  3323334433      22  456789999999999


Q ss_pred             eEEEEeCCCCceEEEEeCCCChHHHHHH
Q 036413          215 VVLVIDPITGEKMRKWCGMVDPVSLLED  242 (346)
Q Consensus       215 ~i~iidp~tge~l~~~~G~~~~~~~i~~  242 (346)
                      ++.|    .|+.   +.|..+.++|.+.
T Consensus        69 T~~i----~G~~---~~G~~~~~~l~~~   89 (106)
T 3kp8_A           69 TWII----NGRT---YTGVRSLEALAVA   89 (106)
T ss_dssp             EEEE----TTEE---EESCCCHHHHHHH
T ss_pred             EEEE----CCEE---ecCCCCHHHHHHH
Confidence            9777    4763   6798887655443

>2jp7_A MRNA export factor MEX67; solution MEX67, UBA, translation; NMR {Saccharomyces cerevisiae} PDB: 2khh_A

Probab=97.01  E-value=0.0006  Score=48.97  Aligned_cols=42  Identities=17%  Similarity=0.307  Sum_probs=39.9

Q ss_pred             hhHHHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhhc
Q 036413            8 KQRKRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNNN   50 (346)
Q Consensus         8 ~~~~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~~   50 (346)
                      ..+.++|.+|+.. ||-+.+-+..+|+.++||++.|+..|-+.
T Consensus         4 ~~q~~mv~~~s~~-T~Mn~e~S~~cL~~n~Wd~~~A~~~F~~~   45 (57)
T 2jp7_A            4 PVQLELLNKLHLE-TKLNAEYTFMLAEQSNWNYEVAIKGFQSS   45 (57)
T ss_dssp             HHHHHHHHHHHHH-HCSCHHHHHHHHHHTTTCSHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHH-HCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence            5688999999999 99999999999999999999999999985

>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A

Probab=97.00  E-value=0.003  Score=54.07  Aligned_cols=102  Identities=12%  Similarity=0.129  Sum_probs=68.6

Q ss_pred             hcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCC---CCCCChHHHHHHhh-cCCC--------
Q 036413          144 DENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDD---DDDDDSECRKVCGY-YKLD--------  211 (346)
Q Consensus       144 ~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~---~~~~~~eg~~~~~~-y~~~--------  211 (346)
                      -.+|++||++-.+||..|...-..+   ..+.+-+++.++.++.++++..   +.+...+-.+++.. |++.        
T Consensus        36 ~~Gk~vlv~F~atwC~~C~~~~p~l---~~l~~~~~~~~~~vi~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~d  112 (180)
T 3kij_A           36 YKGKVSLVVNVASDCQLTDRNYLGL---KELHKEFGPSHFSVLAFPCNQFGESEPRPSKEVESFARKNYGVTFPIFHKIK  112 (180)
T ss_dssp             GTTSEEEEEEECSSSTTHHHHHHHH---HHHHHHHTTTSEEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSCBBCCCC
T ss_pred             cCCCEEEEEEEecCCCCcHHHHHHH---HHHHHHhccCCeEEEEEECCccccCCCCCHHHHHHHHHHhcCCCCceeeeee
Confidence            3689999999999999998753221   1222222325699999886510   01113445566666 4431        


Q ss_pred             ------------------CCce----EEEEeCCCCceEEEEeCCCChHHHHHHHHHHHHc
Q 036413          212 ------------------SLPV----VLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMES  249 (346)
Q Consensus       212 ------------------~~P~----i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~~  249 (346)
                                        ..|.    ..|||+ .|..+..+.|..+++++...|.+.|+.
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~lid~-~G~i~~~~~g~~~~~~l~~~i~~lL~~  171 (180)
T 3kij_A          113 ILGSEGEPAFRFLVDSSKKEPRWNFWKYLVNP-EGQVVKFWRPEEPIEVIRPDIAALVRQ  171 (180)
T ss_dssp             CSSTTCCHHHHHHHHHHTCCCSSTTCEEEECT-TSCEEEEECTTCCGGGTHHHHHHHHHH
T ss_pred             ccCccccHHHHHHHhcCCCCccccceEEEECC-CCCEEEEECCCCCHHHHHHHHHHHHHH
Confidence                              2566    899996 699999999988888888887777654

>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1

Probab=96.99  E-value=0.0023  Score=46.38  Aligned_cols=73  Identities=14%  Similarity=0.130  Sum_probs=53.9

Q ss_pred             EEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCCCCceEEEEeCCCCceEE
Q 036413          149 LLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVLVIDPITGEKMR  228 (346)
Q Consensus       149 LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~i~iidp~tge~l~  228 (346)
                      ..|++.++||..|+.+...+   +.+.+-.+ .++.+..++ +          ..++..|++..+|++.+    .|+.+.
T Consensus         2 ~~v~f~a~wC~~C~~~~~~l---~~~~~~~~-~~~~~~~v~-~----------~~~~~~~~v~~~Pt~~~----~G~~~~   62 (77)
T 1ilo_A            2 MKIQIYGTGCANCQMLEKNA---REAVKELG-IDAEFEKIK-E----------MDQILEAGLTALPGLAV----DGELKI   62 (77)
T ss_dssp             EEEEEECSSSSTTHHHHHHH---HHHHHHTT-CCEEEEEEC-S----------HHHHHHHTCSSSSCEEE----TTEEEE
T ss_pred             cEEEEEcCCChhHHHHHHHH---HHHHHHcC-CceEEEEec-C----------HHHHHHCCCCcCCEEEE----CCEEEE
Confidence            45888889999999986444   44445555 678888775 3          46788999999999988    577665


Q ss_pred             EEeCCC-ChHHHHHH
Q 036413          229 KWCGMV-DPVSLLED  242 (346)
Q Consensus       229 ~~~G~~-~~~~~i~~  242 (346)
                      .  |.. +.+++.+.
T Consensus        63 ~--G~~~~~~~l~~~   75 (77)
T 1ilo_A           63 M--GRVASKEEIKKI   75 (77)
T ss_dssp             C--SSCCCHHHHHHH
T ss_pred             c--CCCCCHHHHHHH
Confidence            4  986 77766554

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A

Probab=96.98  E-value=0.0046  Score=54.44  Aligned_cols=92  Identities=14%  Similarity=0.198  Sum_probs=68.7

Q ss_pred             hcCcEEEEEecCC-CCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCCCCceEEEEeCC
Q 036413          144 DENKWLLVNLQSP-KEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVLVIDPI  222 (346)
Q Consensus       144 ~~~K~LlV~l~~~-~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~i~iidp~  222 (346)
                      .+++.+||++.++ ||..|+.+.. +|  +.+.+. . .++.|..++.+      .++...++..|++..+|++.|+.  
T Consensus        20 ~~~~v~lv~f~~~~~C~~C~~~~~-~~--~~la~~-~-~~v~~~~vd~~------~~~~~~~~~~~~v~~~Pt~~~~~--   86 (226)
T 1a8l_A           20 MVNPVKLIVFVRKDHCQYCDQLKQ-LV--QELSEL-T-DKLSYEIVDFD------TPEGKELAKRYRIDRAPATTITQ--   86 (226)
T ss_dssp             CCSCEEEEEEECSSSCTTHHHHHH-HH--HHHHTT-C-TTEEEEEEETT------SHHHHHHHHHTTCCSSSEEEEEE--
T ss_pred             cCCCeEEEEEecCCCCchhHHHHH-HH--HHHHhh-C-CceEEEEEeCC------CcccHHHHHHcCCCcCceEEEEc--
Confidence            4567788999999 9999998842 22  123332 4 67889999988      87788999999999999999995  


Q ss_pred             CCceE-EEEeCCCChHHHHHHHHHHHH
Q 036413          223 TGEKM-RKWCGMVDPVSLLEDLLSFME  248 (346)
Q Consensus       223 tge~l-~~~~G~~~~~~~i~~L~~fl~  248 (346)
                      .|+.. ..+.|..+..++.+.+...+.
T Consensus        87 ~g~~~~~~~~G~~~~~~l~~~l~~~l~  113 (226)
T 1a8l_A           87 DGKDFGVRYFGLPAGHEFAAFLEDIVD  113 (226)
T ss_dssp             TTBCCSEEEESCCCTTHHHHHHHHHHH
T ss_pred             CCceeeEEEeccCcHHHHHHHHHHHHh
Confidence            36543 567787777777666666553

>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10

Probab=96.97  E-value=0.0024  Score=57.07  Aligned_cols=94  Identities=17%  Similarity=0.111  Sum_probs=67.1

Q ss_pred             cCcEEEEEec-CCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChH-----------------------
Q 036413          145 ENKWLLVNLQ-SPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSE-----------------------  200 (346)
Q Consensus       145 ~~K~LlV~l~-~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~e-----------------------  200 (346)
                      .+||+||++. ..+|+.|...-..+  .+...+|-+ .++.++.++.+      +.+                       
T Consensus        55 ~Gk~vll~F~pa~~Cp~C~~~~~~l--~~l~~~~~~-~~v~vv~Is~D------~~~~~~~~~~~~~~~~g~~~~~fp~l  125 (220)
T 1zye_A           55 KGKYLVLFFYPLDFTFVCPTEIIAF--SDKASEFHD-VNCEVVAVSVD------SHFSHLAWINTPRKNGGLGHMNIALL  125 (220)
T ss_dssp             TTSEEEEEECSCTTCSSSHHHHHHH--HHHHHHHHH-TTEEEEEEESS------CHHHHHHHHTSCGGGTCCCSCSSEEE
T ss_pred             CCCeEEEEEECCCCCCCCHHHHHHH--HHHHHHHHH-CCCEEEEEECC------CHHHHHHHHHHHHHhCCCcCCceEEE
Confidence            4699999999 99999998653222  122233333 68888888877      321                       


Q ss_pred             ---HHHHHhhcCCC------CCceEEEEeCCCCceEEEEeCCC----ChHHHHHHHHHHHH
Q 036413          201 ---CRKVCGYYKLD------SLPVVLVIDPITGEKMRKWCGMV----DPVSLLEDLLSFME  248 (346)
Q Consensus       201 ---g~~~~~~y~~~------~~P~i~iidp~tge~l~~~~G~~----~~~~~i~~L~~fl~  248 (346)
                         ...++..|++.      .+|++.|||+ .|..+..+.|..    +.+++++.|.....
T Consensus       126 ~D~~~~i~~~ygv~~~~~g~~~P~~~liD~-~G~I~~~~~g~~~~~~~~~ell~~l~~l~~  185 (220)
T 1zye_A          126 SDLTKQISRDYGVLLEGPGLALRGLFIIDP-NGVIKHLSVNDLPVGRSVEETLRLVKAFQF  185 (220)
T ss_dssp             ECTTSHHHHHTTCEETTTTEECEEEEEECT-TSBEEEEEEECTTCCCCHHHHHHHHHHHHH
T ss_pred             ECCcHHHHHHhCCeecCCCcccceEEEECC-CCEEEEEEecCCCCCCCHHHHHHHHHHhhh
Confidence               24577788887      8999999997 699888877743    45788887776653

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A

Probab=96.97  E-value=0.0031  Score=55.86  Aligned_cols=88  Identities=6%  Similarity=0.032  Sum_probs=67.0

Q ss_pred             hhcCcEEEEEecCCCCccccccccccCCCHHHHHHhcc-CcEEEEEeecCCCCCCCChHHHHHHhhcCCCCCceEEEEeC
Q 036413          143 SDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRA-SNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVLVIDP  221 (346)
Q Consensus       143 k~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~-~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~i~iidp  221 (346)
                      ...+++++|++.++||..|+.+.      +.+.++.++ .++.|..++.+      .  ...++..|++..+|++.+   
T Consensus       133 ~~~~~~~~v~F~a~wC~~C~~~~------~~~~~~~~~~~~v~~~~vd~~------~--~~~l~~~~~v~~~Pt~~~---  195 (229)
T 2ywm_A          133 VVDIPIEIWVFVTTSCGYCPSAA------VMAWDFALANDYITSKVIDAS------E--NQDLAEQFQVVGVPKIVI---  195 (229)
T ss_dssp             TCCSCEEEEEEECTTCTTHHHHH------HHHHHHHHHCTTEEEEEEEGG------G--CHHHHHHTTCCSSSEEEE---
T ss_pred             hcCCCeEEEEEECCCCcchHHHH------HHHHHHHHHCCCeEEEEEECC------C--CHHHHHHcCCcccCEEEE---
Confidence            34567779999999999999885      444444440 26888888766      2  356889999999999998   


Q ss_pred             CCCceEEEEeCCCChHHHHHHHHHHHHc
Q 036413          222 ITGEKMRKWCGMVDPVSLLEDLLSFMES  249 (346)
Q Consensus       222 ~tge~l~~~~G~~~~~~~i~~L~~fl~~  249 (346)
                       .|+ +..+.|..+.++|.+.|.+.+..
T Consensus       196 -~G~-~~~~~G~~~~~~l~~~l~~~~~~  221 (229)
T 2ywm_A          196 -NKG-VAEFVGAQPENAFLGYIMAVYEK  221 (229)
T ss_dssp             -GGG-TEEEESCCCHHHHHHHHHHHHHH
T ss_pred             -CCE-EEEeeCCCCHHHHHHHHHHHhhh
Confidence             477 56688999998888888887754

>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10

Probab=96.96  E-value=0.0018  Score=56.77  Aligned_cols=93  Identities=15%  Similarity=0.124  Sum_probs=65.9

Q ss_pred             cCcEEEEEec-CCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChH-----------------------
Q 036413          145 ENKWLLVNLQ-SPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSE-----------------------  200 (346)
Q Consensus       145 ~~K~LlV~l~-~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~e-----------------------  200 (346)
                      .+||+||++. .++|+.|......+  ++...+|-+ .++.++.++.+      +.+                       
T Consensus        35 ~gk~vvl~F~~~~~C~~C~~~~~~l--~~l~~~~~~-~~v~vi~Is~D------~~~~~~~~~~~~~~~~~~~~~~~p~l  105 (202)
T 1uul_A           35 KGKWLVLFFYPMDFTFVCPTEICQF--SDRVKEFSD-IGCEVLACSMD------SEYSHLAWTSIERKRGGLGQMNIPIL  105 (202)
T ss_dssp             TTSEEEEEECSCTTCSHHHHHHHHH--HHTHHHHHT-TTEEEEEEESS------CHHHHHHHHHSCGGGTCCCSCSSCEE
T ss_pred             CCCeEEEEEECCCCCCcCHHHHHHH--HHHHHHHHH-CCCEEEEEeCC------CHHHHHHHHHHHHhhCCCCCCceeEE
Confidence            5799999999 99999998664321  112223333 57888888887      322                       


Q ss_pred             ---HHHHHhhcCCC------CCceEEEEeCCCCceEEEEeCCC----ChHHHHHHHHHHH
Q 036413          201 ---CRKVCGYYKLD------SLPVVLVIDPITGEKMRKWCGMV----DPVSLLEDLLSFM  247 (346)
Q Consensus       201 ---g~~~~~~y~~~------~~P~i~iidp~tge~l~~~~G~~----~~~~~i~~L~~fl  247 (346)
                         ...++..|++.      .+|++.|||+ .|..+..+.|..    +.+++++.|....
T Consensus       106 ~D~~~~~~~~ygv~~~~~g~~~P~~~lid~-~G~i~~~~~g~~~~~~~~~ell~~l~~l~  164 (202)
T 1uul_A          106 ADKTKCIMKSYGVLKEEDGVAYRGLFIIDP-KQNLRQITVNDLPVGRDVDEALRLVKAFQ  164 (202)
T ss_dssp             ECTTCHHHHHHTCEETTTTEECEEEEEECT-TSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred             ECCchHHHHHcCCccCCCCceeeEEEEECC-CCEEEEEEeCCCCCCCCHHHHHHHHHHhh
Confidence               23566778887      8999999997 699888877743    4577887777654

>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}

Probab=96.90  E-value=0.0023  Score=45.12  Aligned_cols=43  Identities=19%  Similarity=0.187  Sum_probs=38.1

Q ss_pred             hhHHHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhhcC
Q 036413            8 KQRKRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNNNS   51 (346)
Q Consensus         8 ~~~~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~~~   51 (346)
                      ..-.++|.+.+++ +-.+.+.|+..|.+++||++.||+..|++.
T Consensus         9 ~~~~~~l~~L~~M-GF~~~~~~~~AL~~t~gnve~Ave~L~~~~   51 (53)
T 2knz_A            9 VRFQQQLEQLNSM-GFINREANLQALIATGGDINAAIERLLGSQ   51 (53)
T ss_dssp             HHHHHHHHHHHTT-TCCCHHHHHHHHHHHTSCHHHHHHHHHHCC
T ss_pred             hHHHHHHHHHHHc-CCCCHHHHHHHHHHhCCCHHHHHHHHHHcC
Confidence            4556789999999 666999999999999999999999998854

>2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A

Probab=96.81  E-value=0.0033  Score=56.00  Aligned_cols=93  Identities=15%  Similarity=0.121  Sum_probs=66.0

Q ss_pred             cCcEEEEEec-CCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChH-----------------------
Q 036413          145 ENKWLLVNLQ-SPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSE-----------------------  200 (346)
Q Consensus       145 ~~K~LlV~l~-~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~e-----------------------  200 (346)
                      .+||+||++. .++|+.|......+  ++...+|-+ .++.++.++.+      +++                       
T Consensus        51 ~gk~vvl~F~pa~~C~~C~~~~~~l--~~l~~~~~~-~~v~vv~Is~D------~~~~~~~~~~~~~~~~g~~~~~fp~l  121 (213)
T 2i81_A           51 GKKYVLLYFYPLDFTFVCPSEIIAL--DKALDAFHE-RNVELLGCSVD------SKYTHLAWKKTPLAKGGIGNIKHTLL  121 (213)
T ss_dssp             TTCEEEEEECSCTTSSHHHHHHHHH--HHTHHHHHH-TTEEEEEEESS------CHHHHHHHHSSCGGGTCCCSCSSEEE
T ss_pred             CCCeEEEEEEcCCCCCCCHHHHHHH--HHHHHHHHH-CCCEEEEEeCC------CHHHHHHHHHHHHhhCCccCCCceEE
Confidence            6799999999 99999998764322  122223333 67888888877      432                       


Q ss_pred             ---HHHHHhhcCCC-----CCceEEEEeCCCCceEEEEeCCC----ChHHHHHHHHHHH
Q 036413          201 ---CRKVCGYYKLD-----SLPVVLVIDPITGEKMRKWCGMV----DPVSLLEDLLSFM  247 (346)
Q Consensus       201 ---g~~~~~~y~~~-----~~P~i~iidp~tge~l~~~~G~~----~~~~~i~~L~~fl  247 (346)
                         ...++..|++.     ..|++.|||+ .|+.+..+.|..    +.+++++.|....
T Consensus       122 ~D~~~~~~~~ygv~~~~g~~~p~~~lID~-~G~i~~~~~~~~~~~~~~~ell~~l~~l~  179 (213)
T 2i81_A          122 SDITKSISKDYNVLFDDSVSLRAFVLIDM-NGIVQHLLVNNLAIGRSVDEILRIIDAIQ  179 (213)
T ss_dssp             ECTTSHHHHHTTCEETTTEECEEEEEECT-TSBEEEEEEECTTCCCCHHHHHHHHHHHH
T ss_pred             ECCchHHHHHhCCccccCCcccEEEEECC-CCEEEEEEecCCCCCCCHHHHHHHHHHHH
Confidence               23566778887     7999999997 699888876643    4778888777654

>2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens}

Probab=96.76  E-value=0.0024  Score=54.80  Aligned_cols=97  Identities=10%  Similarity=0.084  Sum_probs=59.4

Q ss_pred             hcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCC---CCCCChHHHHHHhhc------------
Q 036413          144 DENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDD---DDDDDSECRKVCGYY------------  208 (346)
Q Consensus       144 ~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~---~~~~~~eg~~~~~~y------------  208 (346)
                      -.+||+||++-.+||..|......+  .+...+|-+ .++.++.++.+..   +.+...+..+++..|            
T Consensus        45 ~~gk~vll~F~atwC~~C~~~~~~l--~~l~~~~~~-~~v~vv~vs~d~~~~~e~~~~~~~~~~~~~~~~~~p~~~~~d~  121 (183)
T 2obi_A           45 YRGFVCIVTNVASQCGKTEVNYTQL--VDLHARYAE-CGLRILAFPCNQFGKQEPGSNEEIKEFAAGYNVKFDMFSKICV  121 (183)
T ss_dssp             GTTSEEEEEEECSSSTTHHHHHHHH--HHHHHHHGG-GTEEEEEEECCCSTTCCCSCHHHHHHHHHTTTCCSEEBCCCCC
T ss_pred             cCCCEEEEEEeCCCCCCcHHHHHHH--HHHHHHHhc-CCeEEEEEECCCCCCCCCCCHHHHHHHHHHcCCCceEEeeecc
Confidence            3589999999999999997653222  111222222 4688888776410   001112233333322            


Q ss_pred             -------------------C-----CCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHH
Q 036413          209 -------------------K-----LDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLL  244 (346)
Q Consensus       209 -------------------~-----~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~  244 (346)
                                         .     +...|++.|||+ .|+.+..+.|..+++++.+.|.
T Consensus       122 ~~~~~~~~~~~l~~~~~~~g~~~~~i~~~P~~~lid~-~G~i~~~~~g~~~~~~l~~~i~  180 (183)
T 2obi_A          122 NGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDK-NGCVVKRYGPMEEPLVIEKDLP  180 (183)
T ss_dssp             SSTTSCHHHHHHHTSTTTCCSSSSSCCSTTCEEEECT-TSCEEEEECTTSCTHHHHTTSG
T ss_pred             CCcchhHHHHHhhccCCCCCcccccccccceEEEECC-CCCEEEEeCCCCCHHHHHHHHH
Confidence                               1     223599999996 6999999999888887765554

>2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A

Probab=96.73  E-value=0.006  Score=53.37  Aligned_cols=103  Identities=13%  Similarity=0.109  Sum_probs=67.0

Q ss_pred             hcCcEEEEEecCCCCcc-ccccccccCCCHHHHHHhcc---CcEEEEEeecCCCCCCCC---------------------
Q 036413          144 DENKWLLVNLQSPKEFT-SHTLNRDTWADEAVSQTIRA---SNFIFWQVYDDDDDDDDD---------------------  198 (346)
Q Consensus       144 ~~~K~LlV~l~~~~~f~-c~~lnRdvw~~~~V~~~i~~---~nFVfw~~~~~~~~~~~~---------------------  198 (346)
                      -.+||+||++-.+||.. |......+   ..+.+-+.+   .++.++.++++.  ..++                     
T Consensus        39 ~~Gk~vlv~F~at~C~~vC~~~~~~l---~~l~~~~~~~~~~~v~vv~Is~D~--~~d~~~~~~~~~~~~~~~~~~l~~~  113 (200)
T 2b7k_A           39 LLGKFSIIYFGFSNCPDICPDELDKL---GLWLNTLSSKYGITLQPLFITCDP--ARDSPAVLKEYLSDFHPSILGLTGT  113 (200)
T ss_dssp             GTTSCEEEEEECTTCCSHHHHHHHHH---HHHHHHHHHHHCCCCEEEEEESCT--TTCCHHHHHHHHTTSCTTCEEEECC
T ss_pred             cCCCEEEEEEECCCCcchhHHHHHHH---HHHHHHHHHhhCCceEEEEEECCC--CCCCHHHHHHHHHHcCCCceEEeCC
Confidence            35899999999999997 97653211   111111220   367777776651  0011                     


Q ss_pred             -hHHHHHHhhcCCC-CC---------------ceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHHcCCc
Q 036413          199 -SECRKVCGYYKLD-SL---------------PVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMESGPR  252 (346)
Q Consensus       199 -~eg~~~~~~y~~~-~~---------------P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~~~~~  252 (346)
                       .+...++..|++. ..               |++.|||+ .|+.+..+.|..+++.+.+.|.+.+.....
T Consensus       114 ~d~~~~~~~~~gv~~~~p~~~~~~~~~~~~~~~~~~liD~-~G~i~~~~~g~~~~~~~~~~i~~~l~~l~~  183 (200)
T 2b7k_A          114 FDEVKNACKKYRVYFSTPPNVKPGQDYLVDHSIFFYLMDP-EGQFVDALGRNYDEKTGVDKIVEHVKSYVP  183 (200)
T ss_dssp             HHHHHHHHHHTTC--------------CTTTCCCEEEECT-TSCEEEEECTTCCTTHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHcCcEEeeccccCCCCCceeeecceEEEECC-CCcEEEEeCCCCCHHHHHHHHHHHHHHhhh
Confidence             1234567777775 33               37899997 699999988888889999999999876543

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=96.71  E-value=0.00092  Score=70.45  Aligned_cols=97  Identities=21%  Similarity=0.292  Sum_probs=67.0

Q ss_pred             ccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCC
Q 036413          132 NGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLD  211 (346)
Q Consensus       132 ~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~  211 (346)
                      ..+|++++    +.++.+||+++++||..|+.|...+   +.+.+-+. ..+.|..++.++      .  ..++..|++.
T Consensus       123 ~~~f~~~i----~~~~~~lv~Fya~wC~~C~~~~p~~---~~~a~~~~-~~v~~~~vd~~~------~--~~l~~~~~v~  186 (780)
T 3apo_A          123 RREFDAAV----NSGELWFVNFYSPGSSHSHDLAPTW---REFAKEVD-GLLRIGAVNCGD------D--RMLCRMKGVN  186 (780)
T ss_dssp             HHHHHHHH----TSSSCEEEEEECSSCHHHHHHHHHH---HHHHHHTT-TTSEEEEEETTT------C--SSCC------
T ss_pred             hHhHHhhh----cCCCcEEEEEeCCCCcchhHhhHHH---HHHHHHhc-CceEEEEEeCCC------c--HHHHHHcCCc
Confidence            44567666    6789999999999999999996533   45556666 678898988872      2  4688999999


Q ss_pred             CCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHH
Q 036413          212 SLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSF  246 (346)
Q Consensus       212 ~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~f  246 (346)
                      .||++.++.  .|+.+....|..+.+.+.+.|.+.
T Consensus       187 ~~Pt~~~~~--~g~~~~~~~G~~~~~~l~~~l~~~  219 (780)
T 3apo_A          187 SYPSLFIFR--SGMAAVKYNGDRSKESLVAFAMQH  219 (780)
T ss_dssp             --CEEEEEC--TTSCCEECCSCSCHHHHHHHHHTT
T ss_pred             eeeeEEEEe--CCcEeeEecCCCCHHHHHHHHHHh
Confidence            999998884  588777888988877666655443

>2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A

Probab=96.69  E-value=0.0071  Score=49.43  Aligned_cols=90  Identities=9%  Similarity=0.083  Sum_probs=66.4

Q ss_pred             hcCcEEEEEecCCCCccccccccccCCCHHHHHHhc--cCcEEEEEeecCCCCCCCChHHHHHHhhcCCCC--CceEEEE
Q 036413          144 DENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIR--ASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDS--LPVVLVI  219 (346)
Q Consensus       144 ~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~--~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~--~P~i~ii  219 (346)
                      +..+.++|++..+ |.+|.++.      +.+.++-+  ...+.|..++++      .  ...++..|++.+  .|+++|+
T Consensus        21 ~~~~pv~v~f~a~-~~~c~~~~------p~l~~~A~~~~gk~~f~~vd~d------~--~~~~a~~~gi~~~~iPtl~i~   85 (133)
T 2djk_A           21 SAGIPLAYIFAET-AEERKELS------DKLKPIAEAQRGVINFGTIDAK------A--FGAHAGNLNLKTDKFPAFAIQ   85 (133)
T ss_dssp             HTTSCEEEEECSC-SSSHHHHH------HHHHHHHHSSTTTSEEEEECTT------T--TGGGTTTTTCCSSSSSEEEEE
T ss_pred             cCCCCEEEEEecC-hhhHHHHH------HHHHHHHHHhCCeEEEEEEchH------H--hHHHHHHcCCCcccCCEEEEE
Confidence            4678899999988 78887662      44455444  146888888776      2  235889999988  9999999


Q ss_pred             eCCCCceEEEEe--CCCChHHHHHHHHHHHHc
Q 036413          220 DPITGEKMRKWC--GMVDPVSLLEDLLSFMES  249 (346)
Q Consensus       220 dp~tge~l~~~~--G~~~~~~~i~~L~~fl~~  249 (346)
                      ....|++. ...  |.++.+.+.+.|..+++.
T Consensus        86 ~~~~g~~~-~~~~~g~~~~~~l~~fi~~~l~G  116 (133)
T 2djk_A           86 EVAKNQKF-PFDQEKEITFEAIKAFVDDFVAG  116 (133)
T ss_dssp             CTTTCCBC-CCCSSSCCCHHHHHHHHHHHHHT
T ss_pred             ecCcCccc-CCCCccccCHHHHHHHHHHHHcC
Confidence            85346664 444  989998888888888863

>2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics, structural genomics consortium, SGC, oxidoreductase; 1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A

Probab=96.61  E-value=0.0071  Score=53.61  Aligned_cols=102  Identities=12%  Similarity=0.130  Sum_probs=65.3

Q ss_pred             hhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCC---CCCCCChHHHHHHh------hcCC--
Q 036413          142 GSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDD---DDDDDDSECRKVCG------YYKL--  210 (346)
Q Consensus       142 Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~---~~~~~~~eg~~~~~------~y~~--  210 (346)
                      +.-++|++|||+-.+||.+|...-..+  ++...+|=. .++.++.++.+.   .+.+...+..+|+.      .|++  
T Consensus        43 ~~~~Gk~vlv~FwatwC~~C~~e~p~l--~~l~~~~~~-~g~~vv~v~~d~~~~~e~d~~~~i~~f~~~~~~~~~~~~~f  119 (208)
T 2f8a_A           43 GSLRGKVLLIENVASLGGTTVRDYTQM--NELQRRLGP-RGLVVLGFPCNQFGHQENAKNEEILNSLKYVRPGGGFEPNF  119 (208)
T ss_dssp             GGGTTSEEEEEEECSSSTTHHHHHHHH--HHHHHHHGG-GTEEEEEEECCCSTTTTCSCHHHHHHHHHHTSSCTTCCCSS
T ss_pred             HHcCCCEEEEEEECCCCccHHHHHHHH--HHHHHHccC-CCeEEEEEECCcccccCCCCHHHHHHHHHhcccccccccce
Confidence            334689999999999999997632211  112222223 568888887651   01111133344443      2321  


Q ss_pred             ---------------------------------------------------CCCceEEEEeCCCCceEEEEeCCCChHHH
Q 036413          211 ---------------------------------------------------DSLPVVLVIDPITGEKMRKWCGMVDPVSL  239 (346)
Q Consensus       211 ---------------------------------------------------~~~P~i~iidp~tge~l~~~~G~~~~~~~  239 (346)
                                                                         ...|+..|||+ .|+.+.++.|..+++++
T Consensus       120 p~l~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~tflID~-~G~i~~~~~g~~~~~~l  198 (208)
T 2f8a_A          120 MLFEKCEVNGAGAHPLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGP-DGVPLRRYSRRFQTIDI  198 (208)
T ss_dssp             EEBCCCCCSSTTCCHHHHHHHHHSCSCTTCSSCCCSSGGGCCSSSCCTTCCCSTTCEEEECT-TSCEEEEECTTSCGGGG
T ss_pred             EEEEEeecCCCCccHHHHHHHhcCCCccccchhhccccccccccccccCccccCceEEEEcC-CCcEEEEeCCCCCHHHH
Confidence                                                               12388999996 79999999998899888


Q ss_pred             HHHHHHHH
Q 036413          240 LEDLLSFM  247 (346)
Q Consensus       240 i~~L~~fl  247 (346)
                      .+.|...+
T Consensus       199 ~~~I~~ll  206 (208)
T 2f8a_A          199 EPDIEALL  206 (208)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            88887765

>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=96.60  E-value=0.0023  Score=45.35  Aligned_cols=43  Identities=19%  Similarity=0.215  Sum_probs=37.7

Q ss_pred             hHHHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhhcCC
Q 036413            9 QRKRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNNNSN   52 (346)
Q Consensus         9 ~~~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~~~~   52 (346)
                      .-+++|.+.+++ +-.+.+.+++.|.+++||++.||...|....
T Consensus         8 ~~~~~l~~L~~M-GF~d~~~n~~AL~~~~Gdv~~Ave~L~~~~~   50 (54)
T 2dah_A            8 HFQVQLEQLRSM-GFLNREANLQALIATGGDVDAAVEKLRQSSG   50 (54)
T ss_dssp             SSHHHHHHHHHH-TCCCHHHHHHHHHHHTSCHHHHHHHHHHHSC
T ss_pred             hHHHHHHHHHHc-CCCcHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence            346789999999 7778888899999999999999999998654

>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti}

Probab=96.59  E-value=0.0046  Score=54.95  Aligned_cols=101  Identities=13%  Similarity=0.105  Sum_probs=68.0

Q ss_pred             cCcE-EEEEecCCCCccccccccccCCCHHHHHHh---ccCcEEEEEeecCCCCC--CCCh-------------------
Q 036413          145 ENKW-LLVNLQSPKEFTSHTLNRDTWADEAVSQTI---RASNFIFWQVYDDDDDD--DDDS-------------------  199 (346)
Q Consensus       145 ~~K~-LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i---~~~nFVfw~~~~~~~~~--~~~~-------------------  199 (346)
                      .+|+ +||++-.+||..|...-      +.+.++.   ++.++.++.++.+....  .++.                   
T Consensus        57 ~gk~~vll~F~a~~C~~C~~~~------~~l~~l~~~~~~~~v~vv~Vs~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D  130 (218)
T 3u5r_E           57 KDSPALLVAFISNRCPFVVLIR------EALAKFAGDYAGQGLAVVAINSNDAQAFPEETLERVGAEVKAYGYGFPYLKD  130 (218)
T ss_dssp             TTCSEEEEEECCSSCHHHHTTH------HHHHHHHHHHTTTTEEEEEEECSCTTTCGGGSHHHHHHHHHHHTCCSCEEEC
T ss_pred             CCCCeEEEEEECCCCccHHHHH------HHHHHHHHHHHhCCcEEEEEECCcccccccCCHHHHHHHHHHhCCCccEEEC
Confidence            4776 99999999999997664      3333333   22569999998851000  0011                   


Q ss_pred             HHHHHHhhcCCCCCceEEEEeCCCCceEEEEe---------CCCChHHHHHHHHHHHHcCCc
Q 036413          200 ECRKVCGYYKLDSLPVVLVIDPITGEKMRKWC---------GMVDPVSLLEDLLSFMESGPR  252 (346)
Q Consensus       200 eg~~~~~~y~~~~~P~i~iidp~tge~l~~~~---------G~~~~~~~i~~L~~fl~~~~~  252 (346)
                      ....++..|++..+|++.|||+ .|+.+....         |..+.+++.+.|...+...+.
T Consensus       131 ~~~~~~~~~~v~~~P~~~liD~-~G~i~~~g~~d~~~~~~~~~~~~~~l~~~i~~ll~~~~~  191 (218)
T 3u5r_E          131 ASQSVAKAYGAACTPDFFLYDR-ERRLVYHGQFDDARPGNGKDVTGADLRAAVDAVLKGKDV  191 (218)
T ss_dssp             TTCHHHHHHTCCEESEEEEECT-TCBEEEEECSSSCCTTSCCCCCCHHHHHHHHHHHTTCCC
T ss_pred             CccHHHHHcCCCCCCeEEEECC-CCcEEEeccccccccccccccCHHHHHHHHHHHHcCCCC
Confidence            1346778899999999999996 688775421         234578888888888866544

>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1

Probab=96.59  E-value=0.0037  Score=41.88  Aligned_cols=39  Identities=26%  Similarity=0.412  Sum_probs=35.1

Q ss_pred             HHHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhhc
Q 036413           10 RKRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNNN   50 (346)
Q Consensus        10 ~~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~~   50 (346)
                      ..+.|.+.+++  |-+.+.|++.|.+++||++.|++..|++
T Consensus         4 ~e~~i~~L~~M--GF~~~~a~~AL~~~~~n~e~A~~~L~~~   42 (43)
T 2g3q_A            4 KSLAVEELSGM--GFTEEEAHNALEKCNWDLEAATNFLLDS   42 (43)
T ss_dssp             HHHHHHHHHTT--TSCHHHHHHHHHHHTSCHHHHHHHHHTC
T ss_pred             CHHHHHHHHHc--CCCHHHHHHHHHHhCcCHHHHHHHHHcC
Confidence            35789999999  7899999999999999999999988763

>4gew_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; 2.35A {Caenorhabditis elegans} PDB: 4f1i_A

Probab=96.59  E-value=0.00093  Score=64.56  Aligned_cols=42  Identities=26%  Similarity=0.438  Sum_probs=38.8

Q ss_pred             hHHHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhhcC
Q 036413            9 QRKRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNNNS   51 (346)
Q Consensus         9 ~~~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~~~   51 (346)
                      ..++++.+|-+| |++|+..|..||+..+||||.|++.||+..
T Consensus        44 ~~~~~~~~f~~~-~~~~~~~~~~~l~~~~w~~~~~~~~~~~~~   85 (362)
T 4gew_A           44 SDEQKLHEFAII-TATDEAFAQSILQDVDWDLKKALDVFYGSE   85 (362)
T ss_dssp             CHHHHHHHHHHH-HTCCHHHHHHHTTSSSSCHHHHHHHHHHCG
T ss_pred             chHHHHHHHHHH-hCCcHHHHHHHHhhcCchHHHHHHHHcCCc
Confidence            456799999999 999999999999999999999999999754

>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=96.59  E-value=0.0032  Score=43.65  Aligned_cols=41  Identities=15%  Similarity=0.258  Sum_probs=37.1

Q ss_pred             hhHHHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhhc
Q 036413            8 KQRKRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNNN   50 (346)
Q Consensus         8 ~~~~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~~   50 (346)
                      +..+++|.+.+++  |-+.+.|+..|.+++||++.|++..|++
T Consensus         6 ~~~~~~i~~L~~M--GF~~~~a~~AL~~~~~n~e~A~e~L~~g   46 (49)
T 1ify_A            6 SEYETMLTEIMSM--GYERERVVAALRASYNNPHRAVEYLLTG   46 (49)
T ss_dssp             HHHHHHHHHHHHT--TCCHHHHHHHHHTTTSCSHHHHHHHHHC
T ss_pred             ccCHHHHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence            4567889999999  7899999999999999999999998874

>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A

Probab=96.58  E-value=0.0033  Score=43.02  Aligned_cols=39  Identities=8%  Similarity=0.044  Sum_probs=35.2

Q ss_pred             HHHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhh
Q 036413           10 RKRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNN   49 (346)
Q Consensus        10 ~~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~   49 (346)
                      -+++|.+.+++ +-.+.+.+++.|.+++||++.||...|+
T Consensus         7 ~~~~i~~L~~M-GF~d~~~~~~AL~~~~gnv~~Ave~L~~   45 (46)
T 2bwb_A            7 YEHQLRQLNDM-GFFDFDRNVAALRRSGGSVQGALDSLLN   45 (46)
T ss_dssp             THHHHHHHHHT-TCCCHHHHHHHHHHHTTCHHHHHHHHHC
T ss_pred             HHHHHHHHHHc-CCCcHHHHHHHHHHhCCCHHHHHHHHHc
Confidence            46789999999 6678999999999999999999998885

>2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron}

Probab=95.59  E-value=0.00036  Score=58.14  Aligned_cols=93  Identities=9%  Similarity=0.034  Sum_probs=58.3

Q ss_pred             HHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHh-ccCcEEEEEeecCCCCCCCCh-HHHHHH-----------
Q 036413          139 KDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTI-RASNFIFWQVYDDDDDDDDDS-ECRKVC-----------  205 (346)
Q Consensus       139 ~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i-~~~nFVfw~~~~~~~~~~~~~-eg~~~~-----------  205 (346)
                      ...+.-++|++||++..+||..|..+...+ ......++- + .++.++.++.+.     +. ...++.           
T Consensus        26 ~~l~~~~gk~vll~f~a~~C~~C~~~~~~l-~~~l~~~~~~~-~~~~vv~v~~d~-----~~~~~~~~~~~~~~~~~~~~   98 (159)
T 2ls5_A           26 VTLSSLRGKVVMLQFTASWCGVCRKEMPFI-EKDIWLKHKDN-ADFALIGIDRDE-----PLEKVLAFAKSTGVTYPLGL   98 (159)
Confidence            344444789999999999999998764432 221222233 4 677787777662     11 123333           


Q ss_pred             -------hhcC--CCCCceEEEEeCCCCceEEEEeCCCChHHHH
Q 036413          206 -------GYYK--LDSLPVVLVIDPITGEKMRKWCGMVDPVSLL  240 (346)
Q Consensus       206 -------~~y~--~~~~P~i~iidp~tge~l~~~~G~~~~~~~i  240 (346)
                             ..|+  +..+|++.|||+ .|+.+..+.|. ++.++.
T Consensus        99 d~~~~~~~~~~~~~~~~P~~~lid~-~G~i~~~~~g~-~~~~l~  140 (159)
T 2ls5_A           99 DPGADIFAKYALRDAGITRNVLIDR-EGKIVKLTRLY-NEEEFA  140 (159)
Confidence                   4444  345999999996 69888887773 444433

>2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens}

Probab=96.56  E-value=0.0017  Score=55.75  Aligned_cols=99  Identities=11%  Similarity=0.078  Sum_probs=63.3

Q ss_pred             hcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCC---CCCCChHHHHHHhh-cC----------
Q 036413          144 DENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDD---DDDDDSECRKVCGY-YK----------  209 (346)
Q Consensus       144 ~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~---~~~~~~eg~~~~~~-y~----------  209 (346)
                      -.+|++||++-.+||..|...-..+  ++...+|-+ .++.++.++.+..   +.+...+..+++.. |+          
T Consensus        47 ~~Gk~vlv~F~atwC~~C~~~~p~l--~~l~~~~~~-~~v~vv~vs~d~~~~~e~~~~~~~~~~~~~~~~~~~p~~~~~d  123 (181)
T 2p31_A           47 YRGSVSLVVNVASECGFTDQHYRAL--QQLQRDLGP-HHFNVLAFPCNQFGQQEPDSNKEIESFARRTYSVSFPMFSKIA  123 (181)
T ss_dssp             GTTSEEEEEEECSSSTTHHHHHHHH--HHHHHHHGG-GTEEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSCBBCCCC
T ss_pred             cCCCEEEEEEeccCCCCcHHHHHHH--HHHHHHhhc-CCEEEEEEECcCCCCCCCCCHHHHHHHHHhhcCCCceeEeecc
Confidence            3689999999999999998653221  112222323 5688888877510   00112233445544 22          


Q ss_pred             -------------CCCCc-------eEEEEeCCCCceEEEEeCCCChHHHHHHHHHH
Q 036413          210 -------------LDSLP-------VVLVIDPITGEKMRKWCGMVDPVSLLEDLLSF  246 (346)
Q Consensus       210 -------------~~~~P-------~i~iidp~tge~l~~~~G~~~~~~~i~~L~~f  246 (346)
                                   +..+|       ++.|||+ .|+.+..+.|..+++++.+.|.+.
T Consensus       124 ~~g~~~~~~~~~~~~~~P~~~~~~~~~~lid~-~G~i~~~~~g~~~~~~l~~~i~~l  179 (181)
T 2p31_A          124 VTGTGAHPAFKYLAQTSGKEPTWNFWKYLVAP-DGKVVGAWDPTVSVEEVRPQITAL  179 (181)
T ss_dssp             CSSTTSCHHHHHHHHHHSCCCCSTTCEEEECT-TSCEEEEECTTSCHHHHHHHHHTT
T ss_pred             cCCccchhhhhhhhhcCCCccccceeEEEEcC-CCCEEEEeCCCCCHHHHHHHHHHH
Confidence                         22357       8999996 699999999988888877776543

>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1

Probab=96.56  E-value=0.0035  Score=47.19  Aligned_cols=43  Identities=16%  Similarity=0.169  Sum_probs=38.5

Q ss_pred             hhHHHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhhcCC
Q 036413            8 KQRKRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNNNSN   52 (346)
Q Consensus         8 ~~~~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~~~~   52 (346)
                      ...+++|.+.+++  |-+.+.|+..|.+++||++.|++..|++..
T Consensus        27 ~~~ee~I~~L~eM--GF~r~~a~~AL~~~~~nve~Ave~Ll~~~~   69 (73)
T 1vg5_A           27 AASEEQIQKLVAM--GFDRTQVEVALAAADDDLTVAVEILMSQSG   69 (73)
T ss_dssp             CCCHHHHHHHHTT--TCCHHHHHHHHHHHTSCHHHHHHHHHTCSC
T ss_pred             cccHHHHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHHHHCCC
Confidence            4567899999999  799999999999999999999999998543

>2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens}

Probab=96.55  E-value=0.0035  Score=53.93  Aligned_cols=99  Identities=10%  Similarity=0.109  Sum_probs=61.6

Q ss_pred             hcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCC---CCCCChHHHHHHhhcCC----------
Q 036413          144 DENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDD---DDDDDSECRKVCGYYKL----------  210 (346)
Q Consensus       144 ~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~---~~~~~~eg~~~~~~y~~----------  210 (346)
                      -.+||+||++-.+||..|...-..+  ++...++-+ .++.++.++.+..   +.+...+..+++..|++          
T Consensus        47 ~~Gk~vlv~F~atwC~~C~~~~~~l--~~l~~~~~~-~~v~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~  123 (185)
T 2gs3_A           47 YRGFVCIVTNVASQGGKTEVNYTQL--VDLHARYAE-CGLRILAFPCNQFGKQEPGSNEEIKEFAAGYNVKFDMFSKICV  123 (185)
T ss_dssp             GTTSEEEEEEECSSSTTHHHHHHHH--HHHHHHHGG-GTEEEEEEECCTTTTCCCSCHHHHHHHHHHTTCCSEEBCCCBS
T ss_pred             cCCCEEEEEEecCCCCchHHHHHHH--HHHHHHhhc-CCeEEEEEECcccCCCCCCCHHHHHHHHHHcCCCCeeeeeecc
Confidence            3679999999999999996543221  111222223 5688888876510   00111223444433322          


Q ss_pred             --------------------------CCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHH
Q 036413          211 --------------------------DSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSF  246 (346)
Q Consensus       211 --------------------------~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~f  246 (346)
                                                ...|++.|||+ .|+.+..+.|..+++++.+.|.+.
T Consensus       124 ~~~~~~~~~~~l~~~~~~~g~~~~~i~~~P~~~lid~-~G~i~~~~~g~~~~~~l~~~i~~l  184 (185)
T 2gs3_A          124 NGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDK-NGCVVKRYGPMEEPLVIEKDLPHY  184 (185)
T ss_dssp             SSTTBCHHHHHHTTSGGGCCSSSSSCCSSCCEEEECT-TSCEEEEECTTSCGGGGGGGHHHH
T ss_pred             CChhhhHHHHHHHhhcccccccCCcccccceEEEECC-CCCEEEeeCCCCCHHHHHHHHHHh
Confidence                                      12489999996 699999999988888877776653

>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A

Probab=96.53  E-value=0.015  Score=48.64  Aligned_cols=98  Identities=10%  Similarity=0.187  Sum_probs=60.7

Q ss_pred             cCcEEEEEecCCCCc-cccccccccCCCHHHHHHhccC--cEEEEEeecCCCCCCCCh-HHHHHHhh-------------
Q 036413          145 ENKWLLVNLQSPKEF-TSHTLNRDTWADEAVSQTIRAS--NFIFWQVYDDDDDDDDDS-ECRKVCGY-------------  207 (346)
Q Consensus       145 ~~K~LlV~l~~~~~f-~c~~lnRdvw~~~~V~~~i~~~--nFVfw~~~~~~~~~~~~~-eg~~~~~~-------------  207 (346)
                      .+|++||++-.+||. .|......+   ..+.+-+++.  ++.++.++.+.  ..+++ ...+++..             
T Consensus        32 ~gk~vll~f~~~~C~~~C~~~~~~l---~~l~~~~~~~~~~~~vv~is~d~--~~d~~~~~~~~~~~~~~~~~~~~~l~d  106 (174)
T 1xzo_A           32 KGEVWLADFIFTNCETICPPMTAHM---TDLQKKLKAENIDVRIISFSVDP--ENDKPKQLKKFAANYPLSFDNWDFLTG  106 (174)
T ss_dssp             TTCCEEEEEECSCCSSCCCSHHHHH---HHHHHHHHHTTCCCEEEEEESCT--TTCCHHHHHHHHTTSCCCGGGEEEEBC
T ss_pred             CCCEEEEEEEcCCCcchhHHHHHHH---HHHHHHhhhcCCcEEEEEEEeCC--CCCCHHHHHHHHHHcCCCCcceEEEeC
Confidence            589999999999998 886542211   1222222212  37777777651  00011 11222221             


Q ss_pred             ------------------------cCCCCCceEEEEeCCCCceEEEEeCCC--ChHHHHHHHHHHHH
Q 036413          208 ------------------------YKLDSLPVVLVIDPITGEKMRKWCGMV--DPVSLLEDLLSFME  248 (346)
Q Consensus       208 ------------------------y~~~~~P~i~iidp~tge~l~~~~G~~--~~~~~i~~L~~fl~  248 (346)
                                              |.+...|++.|||+ .|+.+..+.|..  +++++++.|.+.+.
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~-~G~i~~~~~g~~~~~~~~l~~~l~~ll~  172 (174)
T 1xzo_A          107 YSQSEIEEFALKSFKAIVKKPEGEDQVIHQSSFYLVGP-DGKVLKDYNGVENTPYDDIISDVKSAST  172 (174)
T ss_dssp             SCHHHHHHHHHHHHCCCCCCCSSCCSCCSCCEEEEECT-TSEEEEEEESSSSCCHHHHHHHHHHHTC
T ss_pred             CCHHHHHHHHHhhcCeeEeecCCCCeeeeeeEEEEECC-CCeEEEEEcCCCCCCHHHHHHHHHHHHh
Confidence                                    34456799999997 699999999965  47888888887653

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=96.48  E-value=0.0027  Score=66.89  Aligned_cols=117  Identities=10%  Similarity=0.094  Sum_probs=82.3

Q ss_pred             HHHhhcCCCcccccccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCC
Q 036413          118 NLASLYRPPVDLMFNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDD  197 (346)
Q Consensus       118 ~l~~lf~PP~~l~~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~  197 (346)
                      .+...+.||..  ..-+-+.........+|.++|++..+||..|+.+...+   +.+.+-.+ .++.|..++.+      
T Consensus       649 ~fi~~~~~~~v--~~l~~~~~~~~~~~~~~~v~v~F~a~wC~~C~~~~p~~---~~la~~~~-~~~~~~~vd~~------  716 (780)
T 3apo_A          649 SWGLGFLPQAS--IDLTPQTFNEKVLQGKTHWVVDFYAPWSGPSQNFAPEF---ELLARMIK-GKVRAGKVDCQ------  716 (780)
T ss_dssp             HHHHTTSCCCS--EEECHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHH---HHHHHHHT-TTCEEEEEETT------
T ss_pred             HHHhhhccccc--ccCCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHH---HHHHHHhc-CCceEEEEECC------
Confidence            44444455532  23344444445567789999999999999999885433   44555555 68888888877      


Q ss_pred             ChHHHHHHhhcCCCCCceEEEEeCCCCceEEEEeC----CCChHHHHHHHHHHHHcC
Q 036413          198 DSECRKVCGYYKLDSLPVVLVIDPITGEKMRKWCG----MVDPVSLLEDLLSFMESG  250 (346)
Q Consensus       198 ~~eg~~~~~~y~~~~~P~i~iidp~tge~l~~~~G----~~~~~~~i~~L~~fl~~~  250 (346)
                      .  ...++..|++..+|++.++.  .|+.+....|    ..+.+++.+.|.+.++..
T Consensus       717 ~--~~~~~~~~~v~~~Pt~~~~~--~g~~~~~~~G~~~g~~~~~~l~~~l~~~l~~~  769 (780)
T 3apo_A          717 A--YPQTCQKAGIKAYPSVKLYQ--YERAKKSIWEEQINSRDAKTIAALIYGKLETL  769 (780)
T ss_dssp             T--CHHHHHHTTCCSSSEEEEEE--EETTTTEEEEEEECCCCHHHHHHHHHHHTTC-
T ss_pred             C--CHHHHHhcCCCcCCEEEEEc--CCCccccccCcccCCcCHHHHHHHHHHHHHHh
Confidence            3  24588999999999999993  4766655555    478888988888887654

>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A

Probab=96.45  E-value=0.0016  Score=44.84  Aligned_cols=42  Identities=19%  Similarity=0.145  Sum_probs=38.0

Q ss_pred             hhHHHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhhcC
Q 036413            8 KQRKRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNNNS   51 (346)
Q Consensus         8 ~~~~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~~~   51 (346)
                      ++..++|.+.+++  |-+...|++.|.+|+||++.|.+..|++.
T Consensus         2 ~~e~eaI~rL~~m--GF~~~~a~~Al~a~~~n~e~A~~~Lf~~~   43 (47)
T 1dv0_A            2 SQEKEAIERLKAL--GFPESLVIQAYFACEKNENLAANFLLSQN   43 (47)
T ss_dssp             -CCHHHHTTTTTT--TCCHHHHHHHHTTTTSCHHHHHHHTTSCC
T ss_pred             cchHHHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHHhCc
Confidence            4567899999999  99999999999999999999999999854

>1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A

Probab=96.39  E-value=0.0074  Score=52.03  Aligned_cols=86  Identities=14%  Similarity=0.079  Sum_probs=59.2

Q ss_pred             hhcCcEEEEEecCCCCccccccccccCCCHHHHHHhc-cCcEEEEEeecCCCCCCCChHHHHHHhhcC---CCCCceEEE
Q 036413          143 SDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIR-ASNFIFWQVYDDDDDDDDDSECRKVCGYYK---LDSLPVVLV  218 (346)
Q Consensus       143 k~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~-~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~---~~~~P~i~i  218 (346)
                      .-.+|.++|++..+||.+|+.+.      |.+.++.. -.++.|..++++        +...++..|.   +.++|++.+
T Consensus        51 ~~~~k~vvv~F~A~WC~pC~~~~------P~l~~l~~~~~~v~~~~v~~d--------~~~~~~~~~~~~~v~~iPt~i~  116 (167)
T 1z6n_A           51 RIERRYRLLVAGEMWCPDCQINL------AALDFAQRLQPNIELAIISKG--------RAEDDLRQRLALERIAIPLVLV  116 (167)
T ss_dssp             TCCSCEEEEEECCTTCHHHHHHH------HHHHHHHHHCTTEEEEEECHH--------HHHHHTTTTTTCSSCCSSEEEE
T ss_pred             HhCCCEEEEEEECCCChhHHHHH------HHHHHHHHHCCCcEEEEEECC--------CCHHHHHHHHHcCCCCcCeEEE
Confidence            34579999999999999999883      55555543 135777776555        3455677776   899999999


Q ss_pred             EeCCCCceEEEEeCCCChHHHHHHHHH
Q 036413          219 IDPITGEKMRKWCGMVDPVSLLEDLLS  245 (346)
Q Consensus       219 idp~tge~l~~~~G~~~~~~~i~~L~~  245 (346)
                      ++. .|+.+.++.|  .|..+...+.+
T Consensus       117 ~~~-~G~~~~~~g~--~p~~~~~~i~~  140 (167)
T 1z6n_A          117 LDE-EFNLLGRFVE--RPQAVLDGGPQ  140 (167)
T ss_dssp             ECT-TCCEEEEEES--SCHHHHHHCHH
T ss_pred             ECC-CCCEEEEEcC--CCHHHHHhHHH
Confidence            995 5788777744  23444444433

>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B

Probab=96.37  E-value=0.0054  Score=43.00  Aligned_cols=41  Identities=20%  Similarity=0.216  Sum_probs=36.2

Q ss_pred             hHHHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhhc
Q 036413            9 QRKRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNNN   50 (346)
Q Consensus         9 ~~~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~~   50 (346)
                      .-.++|.+.+++ +-.+.+.|++.|.+++||++.||+..|.+
T Consensus        11 ~~~~~l~~L~~M-GF~~~~~~~~AL~~t~gn~e~A~e~L~~~   51 (52)
T 2jy5_A           11 RFQQQLEQLSAM-GFLNREANLQALIATGGDINAAIERLLGS   51 (52)
T ss_dssp             TTHHHHHHHHHT-TCCCHHHHHHHHHHHTTCHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHc-CCCCHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence            346799999999 65599999999999999999999988864

>3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D

Probab=96.34  E-value=0.005  Score=54.98  Aligned_cols=88  Identities=16%  Similarity=0.101  Sum_probs=61.0

Q ss_pred             hcCcEEEEEec-CCCCccccccccccCCCHHHHHHhc---cCcEEEEEeecCCCCCCCChH-------------------
Q 036413          144 DENKWLLVNLQ-SPKEFTSHTLNRDTWADEAVSQTIR---ASNFIFWQVYDDDDDDDDDSE-------------------  200 (346)
Q Consensus       144 ~~~K~LlV~l~-~~~~f~c~~lnRdvw~~~~V~~~i~---~~nFVfw~~~~~~~~~~~~~e-------------------  200 (346)
                      -.+|++||++- ++||..|...-      +.+.++.+   +.++.++.++++      +.+                   
T Consensus        67 ~~Gk~vll~F~a~~wC~~C~~~~------p~l~~l~~~~~~~~v~vv~Is~D------~~~~~~~~~~~~~~~~~~~~~~  134 (222)
T 3ztl_A           67 YRGKYVVLFFYPADFTFVCPTEI------IAFSDQVEEFNSRNCQVIACSTD------SQYSHLAWDNLDRKSGGLGHMK  134 (222)
T ss_dssp             GTTSEEEEEECSCSSCSHHHHHH------HHHHHTHHHHHTTTEEEEEEESS------CHHHHHHHHHSCGGGTSCCSCS
T ss_pred             hCCCeEEEEEECCCCCCchHHHH------HHHHHHHHHHHHCCCEEEEEECC------CHHHHHHHHHHhhhhccccccc
Confidence            36899999998 59999997753      33333332   257888888887      432                   


Q ss_pred             -------HHHHHhhcCCC------CCceEEEEeCCCCceEEEEeCCCC----hHHHHHHHH
Q 036413          201 -------CRKVCGYYKLD------SLPVVLVIDPITGEKMRKWCGMVD----PVSLLEDLL  244 (346)
Q Consensus       201 -------g~~~~~~y~~~------~~P~i~iidp~tge~l~~~~G~~~----~~~~i~~L~  244 (346)
                             ...++..|++.      .+|++.|||+ .|..+..+.|...    .+++++.|.
T Consensus       135 ~~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~-~G~I~~~~~g~~~~~~~~~~il~~l~  194 (222)
T 3ztl_A          135 IPLLADRKQEISKAYGVFDEEDGNAFRGLFIIDP-NGILRQITINDKPVGRSVDETLRLLD  194 (222)
T ss_dssp             SCEEECSSSHHHHHTTCBCTTTSSBCEEEEEECT-TSEEEEEEEECTTBCCCHHHHHHHHH
T ss_pred             eeEEeCCchHHHHHcCCeecCCCCccceEEEECC-CCeEEEEEecCCCCCCCHHHHHHHHH
Confidence                   12455667776      7899999997 6999888877533    455555554

>4f9z_D Endoplasmic reticulum resident protein 27; thioredoxin fold, ER foldase, ERP57, binding protein; HET: PE3 PE4; 2.20A {Homo sapiens} PDB: 2l4c_A

Probab=96.33  E-value=0.031  Score=49.74  Aligned_cols=110  Identities=12%  Similarity=0.083  Sum_probs=71.8

Q ss_pred             cccccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhc
Q 036413          129 LMFNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYY  208 (346)
Q Consensus       129 l~~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y  208 (346)
                      ++-.-+.+.+...-....+++++.+.+.++.+|..+- ..|  ..|..-.+ .++.|.-++.+      ..+..++++.|
T Consensus       114 lv~e~t~~n~~~~~~~~~~~~~l~f~~~~~~~~~~~~-~~~--~~vAk~~k-~~i~F~~vd~~------~~~~~~~l~~f  183 (227)
T 4f9z_D          114 MVTEYNPVTVIGLFNSVIQIHLLLIMNKASPEYEENM-HRY--QKAAKLFQ-GKILFILVDSG------MKENGKVISFF  183 (227)
T ss_dssp             SEEECCHHHHHHHHHSSCCEEEEEEECTTSTTHHHHH-HHH--HHHHHHTT-TTCEEEEEETT------SGGGHHHHHHT
T ss_pred             ceeecCcccHHHHhccCCceEEEEEEcCCcchHHHHH-HHH--HHHHHHhh-CCEEEEEeCCc------cHhHHHHHHHc
Confidence            3445566666655555667777767677777776552 333  23444455 66777777766      55556788999


Q ss_pred             CCC--CCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHH
Q 036413          209 KLD--SLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFME  248 (346)
Q Consensus       209 ~~~--~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~  248 (346)
                      ++.  .+|.|+|++...+.+...-.|.++++.+.+-|..|++
T Consensus       184 gl~~~~~P~~~i~~~~~~~ky~~~~~~~t~~~i~~Fv~~~~~  225 (227)
T 4f9z_D          184 KLKESQLPALAIYQTLDDEWDTLPTAEVSVEHVQNFCDGFLS  225 (227)
T ss_dssp             TCCGGGCSEEEEEESSSCCEEEETTCCCCHHHHHHHHHHHHT
T ss_pred             CCCcccCCEEEEEECCCCccccCCcCCCCHHHHHHHHHHHhC
Confidence            997  8999999997544344333467788877776666654

>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1

Probab=96.31  E-value=0.0057  Score=43.99  Aligned_cols=41  Identities=7%  Similarity=0.058  Sum_probs=36.6

Q ss_pred             hHHHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhhc
Q 036413            9 QRKRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNNN   50 (346)
Q Consensus         9 ~~~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~~   50 (346)
                      .-+++|.+.+++ +-.+.+.+++.|.+++||++.||+..|.+
T Consensus        16 ~~~~qi~~L~~M-GF~d~~~~~~AL~~~~gnve~Ave~L~~~   56 (58)
T 1wr1_B           16 RYEHQLRQLNDM-GFFDFDRNVAALRRSGGSVQGALDSLLNG   56 (58)
T ss_dssp             HTHHHHHHHHHH-TCCCHHHHHHHHHHHTSCHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHc-CCCcHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence            346789999999 66789999999999999999999999875

>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1

Probab=96.31  E-value=0.0035  Score=48.32  Aligned_cols=42  Identities=14%  Similarity=0.148  Sum_probs=38.5

Q ss_pred             HHHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhhcCCC
Q 036413           10 RKRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNNNSNN   53 (346)
Q Consensus        10 ~~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~~~~~   53 (346)
                      .+++|.+.+++  |-+.+.|+..|.+++||++.|++..|.+.+.
T Consensus        29 ~ee~I~~Lv~M--GF~~~~A~~AL~~t~gdve~A~e~L~sh~~~   70 (83)
T 1veg_A           29 SQESINQLVYM--GFDTVVAEAALRVFGGNVQLAAQTLAHHGGS   70 (83)
T ss_dssp             CHHHHHHHHHH--SCCHHHHHHHHHHTTTCHHHHHHHHHHHTSS
T ss_pred             CHHHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHHhCCCC
Confidence            57899999999  8899999999999999999999999987653

>3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A*

Probab=96.28  E-value=0.013  Score=51.43  Aligned_cols=90  Identities=12%  Similarity=0.166  Sum_probs=64.9

Q ss_pred             HHHHhhcCCCccc-ccccCHHHHHHHhhhcCcEEEEEecC-------CCCccccccccccCCCHHHHHHhc--c-----C
Q 036413          117 NNLASLYRPPVDL-MFNGSFEKAKDVGSDENKWLLVNLQS-------PKEFTSHTLNRDTWADEAVSQTIR--A-----S  181 (346)
Q Consensus       117 ~~l~~lf~PP~~l-~~~gsf~~A~~~Ak~~~K~LlV~l~~-------~~~f~c~~lnRdvw~~~~V~~~i~--~-----~  181 (346)
                      ..|..+-.+...+ +-..+|++.+.  ...+.++||.+..       .||..|++|.      +.+.++-+  .     .
T Consensus         9 ~~l~~l~~~~~vi~lt~~nF~~~v~--~~~~~~vvV~F~A~~~~~~~~wCgpCk~l~------P~~e~lA~~~~~~~~~~   80 (178)
T 3ga4_A            9 DDILQLKDDTGVITVTADNYPLLSR--GVPGYFNILYITMRGTNSNGMSCQLCHDFE------KTYHAVADVIRSQAPQS   80 (178)
T ss_dssp             HHHHTTCCTTSEEECCTTTHHHHTT--CCTTCEEEEEEECCSBCTTSCBCHHHHHHH------HHHHHHHHHHHHHCTTC
T ss_pred             HHHHHhhccCCCEECCHHHHHHHHc--ccCCCcEEEEEeCCCCCCCCCCChhHHHHH------HHHHHHHHHhhhccCCC
Confidence            3455555444344 45778997542  4567899999988       4999999993      44444333  1     4


Q ss_pred             cEEEEEeecCCCCCCCChHHHHHHhhcCCCCCceEEEEeCC
Q 036413          182 NFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVLVIDPI  222 (346)
Q Consensus       182 nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~i~iidp~  222 (346)
                      +.+|..+|++        ++..++..|++.++|+|.++-+-
T Consensus        81 ~v~f~kvD~d--------~~~~la~~~~I~siPtl~~F~~g  113 (178)
T 3ga4_A           81 LNLFFTVDVN--------EVPQLVKDLKLQNVPHLVVYPPA  113 (178)
T ss_dssp             CEEEEEEETT--------TCHHHHHHTTCCSSCEEEEECCC
T ss_pred             CEEEEEEECc--------cCHHHHHHcCCCCCCEEEEEcCC
Confidence            6788888877        35789999999999999999974

>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A*

Probab=96.25  E-value=0.0054  Score=61.62  Aligned_cols=105  Identities=8%  Similarity=0.048  Sum_probs=69.9

Q ss_pred             cccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccC-------cEEEEEeecCCCCCCCChHHHH
Q 036413          131 FNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRAS-------NFIFWQVYDDDDDDDDDSECRK  203 (346)
Q Consensus       131 ~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~-------nFVfw~~~~~~~~~~~~~eg~~  203 (346)
                      -..+|++++  +...+|.+||++..+||..|+.+...+   +.+.+-+...       ++.|..++.+      ..  ..
T Consensus        29 t~~~F~~~l--~~~~~k~VlV~FyA~WC~pCk~~~P~l---~~la~~~~~~~g~~~~~~v~f~~VD~d------~~--~~   95 (470)
T 3qcp_A           29 SGDDFSRVH--RVAPLCPWIVLFYNDGCGACRRYASTF---SKFAGGLKVEHGKDALQIATAAAVNCA------SE--VD   95 (470)
T ss_dssp             SCSCGGGTC--TTGGGSCEEEEEECTTCHHHHHHHHHH---HHHHHTSCCSSCSSGGGGCEEEEEETT------TC--HH
T ss_pred             CHHHHHHHH--HhCCCCeEEEEEECCCCHHHHHHHHHH---HHHHHHHhhhcccccCceEEEEEEECC------CC--HH
Confidence            345676554  335678999999999999999995332   2233322201       3899999888      32  57


Q ss_pred             HHhhcCCCCCceEEEEeCCCCceEEEE------------eCCCChHHHHHHHHHHHH
Q 036413          204 VCGYYKLDSLPVVLVIDPITGEKMRKW------------CGMVDPVSLLEDLLSFME  248 (346)
Q Consensus       204 ~~~~y~~~~~P~i~iidp~tge~l~~~------------~G~~~~~~~i~~L~~fl~  248 (346)
                      ++..|++..||++.++++..+.....+            ...++.+++...+...+.
T Consensus        96 la~~y~V~~~PTlilf~~gg~~~~~~y~G~r~~e~L~fI~k~l~~~eLe~~~e~Lin  152 (470)
T 3qcp_A           96 LCRKYDINFVPRLFFFYPRDSCRSNEECGTSSLEHVAFENSHLEVDELESEVRRLVN  152 (470)
T ss_dssp             HHHHTTCCSSCEEEEEEESSCCCTTSCCCCCCEEEEECSCTTCCHHHHHHHHHHHHH
T ss_pred             HHHHcCCCccCeEEEEECCCceEEEEeeCCCCHHHHHHHHHhcCHHHHHHHHHHHhh
Confidence            899999999999999986433222122            234677777776666653

>2r37_A Glutathione peroxidase 3; plasma, structural genomics consort oxidoreductase, secreted, selenium, selenocysteine; 1.85A {Homo sapiens}

Probab=96.23  E-value=0.051  Score=48.17  Aligned_cols=103  Identities=11%  Similarity=0.096  Sum_probs=65.6

Q ss_pred             hhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCC---CCCCChHHHHHHh------hcCCC-
Q 036413          142 GSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDD---DDDDDSECRKVCG------YYKLD-  211 (346)
Q Consensus       142 Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~---~~~~~~eg~~~~~------~y~~~-  211 (346)
                      +.=++|++|||+-.+||.+|..+. ++  ++.-.+|=. .++.+++++.+..   +.+...+-..++.      .|++. 
T Consensus        34 s~~kGKvvll~F~At~C~~c~e~p-~L--~~l~~~~~~-~g~~vlgvs~d~f~~~e~~~~~~i~~f~~~~~~~~~~~~~f  109 (207)
T 2r37_A           34 KQYAGKYVLFVNVASYGGLTGQYI-EL--NALQEELAP-FGLVILGFPCNQFGKQEPGENSEILPTLKYVRPGGGFVPNF  109 (207)
T ss_dssp             GGGTTSEEEEEEECSSSTTTTHHH-HH--HHHHHHHGG-GTEEEEEEECCCBTTCCCSCHHHHHHHHHHTSSCTTCCCSS
T ss_pred             HHhCCCEEEEEEeCCCCCChHHHH-HH--HHHHHHhcc-CCEEEEEEECcccCcCCCCCHHHHHHHHHhcchhhccCccc
Confidence            444689999999999999995442 11  112222333 5788888875410   0011123344555      44321 


Q ss_pred             ------------------------------------------------CCceEEEEeCCCCceEEEEeCCCChHHHHHHH
Q 036413          212 ------------------------------------------------SLPVVLVIDPITGEKMRKWCGMVDPVSLLEDL  243 (346)
Q Consensus       212 ------------------------------------------------~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L  243 (346)
                                                                      --|+..|||+ .|+.+.+|.|.++++++...|
T Consensus       110 p~l~d~d~~g~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~p~~~~~i~~~~ttflID~-~G~i~~~~~g~~~~~~l~~~I  188 (207)
T 2r37_A          110 QLFEKGDVNGEKEQKFYTFLKNSCPPTSELLGTSDRLFWEPMKVHDIRWNFEKFLVGP-DGIPIMRWHHRTTVSNVKMDI  188 (207)
T ss_dssp             EEBCCCCSSSTTCCHHHHHHHHHSCCSCSCCCCGGGBCCSSCCTTCCCSTTCEEEECT-TSCEEEEECTTSCHHHHHHHH
T ss_pred             eeeeEeccCCcccchHHHHHHhhCccccccccccccccccccccCcccccceEEEECC-CCcEEEEECCCCCHHHHHHHH
Confidence                                                            0167899996 799999999988999988888


Q ss_pred             HHHHHc
Q 036413          244 LSFMES  249 (346)
Q Consensus       244 ~~fl~~  249 (346)
                      ...+..
T Consensus       189 ~~ll~~  194 (207)
T 2r37_A          189 LSYMRR  194 (207)
T ss_dssp             HHHHHH
T ss_pred             HHHHhh
Confidence            887754

>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}

Probab=96.20  E-value=0.016  Score=52.56  Aligned_cols=88  Identities=11%  Similarity=0.083  Sum_probs=63.3

Q ss_pred             cCcEEEEEecCCCCccccccccccCCCHHHHHHh---ccCcEEEEEeecCCCCCCCChHHHHHHhhcCCCCCceEEEEeC
Q 036413          145 ENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTI---RASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVLVIDP  221 (346)
Q Consensus       145 ~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i---~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~i~iidp  221 (346)
                      .++..+|++.++||..|+.+...+   ..+....   ...++.+..++.+      .  ...++..|++.++|++.|   
T Consensus       137 ~~~~~vv~F~a~wC~~C~~~~p~l---~~la~~~~~~~~~~v~~~~vd~~------~--~~~~~~~~~V~~vPt~~i---  202 (243)
T 2hls_A          137 KGRVHIETIITPSCPYCPYAVLLA---HMFAYEAWKQGNPVILSEAVEAY------E--NPDIADKYGVMSVPSIAI---  202 (243)
T ss_dssp             CSCEEEEEEECSSCSSHHHHHHHH---HHHHHHHHHTTCCCEEEEEEETT------T--CHHHHHHTTCCSSSEEEE---
T ss_pred             CCCcEEEEEECCCCCCcHHHHHHH---HHHHHHcccccCCcEEEEEEECc------c--CHHHHHHcCCeeeCeEEE---
Confidence            477889999999999998874221   1111111   0036888888777      2  235788899999999988   


Q ss_pred             CCCceEEEEeCCCChHHHHHHHHHHHHc
Q 036413          222 ITGEKMRKWCGMVDPVSLLEDLLSFMES  249 (346)
Q Consensus       222 ~tge~l~~~~G~~~~~~~i~~L~~fl~~  249 (346)
                       .|+.+  ..|..+.++|++.|.+.+..
T Consensus       203 -~G~~~--~~G~~~~~~l~~~l~~~~~~  227 (243)
T 2hls_A          203 -NGYLV--FVGVPYEEDFLDYVKSAAEG  227 (243)
T ss_dssp             -TTEEE--EESCCCHHHHHHHHHHHHTT
T ss_pred             -CCEEE--EeCCCCHHHHHHHHHHHhhc
Confidence             47753  78999999999988888754

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A

Probab=96.14  E-value=0.0026  Score=63.47  Aligned_cols=99  Identities=17%  Similarity=0.222  Sum_probs=69.5

Q ss_pred             ccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhc--cCcEEEEEeecCCCCCCCChHHHHHHhhcC
Q 036413          132 NGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIR--ASNFIFWQVYDDDDDDDDDSECRKVCGYYK  209 (346)
Q Consensus       132 ~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~--~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~  209 (346)
                      ..+|++..   ...+|.+||++.++||..|+.+...+   ..+.+-+.  ..++++..++.+      ..+   ... |+
T Consensus       365 ~~~f~~~v---~~~~k~vlv~F~a~wC~~C~~~~p~~---~~l~~~~~~~~~~v~~~~vd~~------~~~---~~~-~~  428 (504)
T 2b5e_A          365 GKNHDEIV---NDPKKDVLVLYYAPWCGHCKRLAPTY---QELADTYANATSDVLIAKLDHT------END---VRG-VV  428 (504)
T ss_dssp             TTTHHHHH---HCTTCCEEEEEECTTCHHHHHHHHHH---HHHHHHHHHHCSSCEEEEEEGG------GCC---CSS-CC
T ss_pred             cccHHHhh---ccCCCCEEEEEECCCChhHHHHhHHH---HHHHHHhhccCCcEEEEEecCC------ccc---ccc-CC
Confidence            44576654   45689999999999999999995432   12222221  148999999877      322   233 99


Q ss_pred             CCCCceEEEEeCCCCce--EEEEeCCCChHHHHHHHHHHHH
Q 036413          210 LDSLPVVLVIDPITGEK--MRKWCGMVDPVSLLEDLLSFME  248 (346)
Q Consensus       210 ~~~~P~i~iidp~tge~--l~~~~G~~~~~~~i~~L~~fl~  248 (346)
                      +..||++.++ + .|+.  .....|..+.+.|++.|.+.+.
T Consensus       429 v~~~Pt~~~~-~-~G~~~~~~~~~G~~~~~~l~~~i~~~~~  467 (504)
T 2b5e_A          429 IEGYPTIVLY-P-GGKKSESVVYQGSRSLDSLFDFIKENGH  467 (504)
T ss_dssp             CSSSSEEEEE-C-CTTSCCCCBCCSCCCHHHHHHHHHHHCT
T ss_pred             ceecCeEEEE-e-CCceecceEecCCCCHHHHHHHHHhcCC
Confidence            9999999999 3 5765  5567898888877777776543

>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A

Probab=96.11  E-value=0.0081  Score=48.54  Aligned_cols=41  Identities=17%  Similarity=0.227  Sum_probs=37.7

Q ss_pred             HHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhhcCC
Q 036413           11 KRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNNNSN   52 (346)
Q Consensus        11 ~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~~~~   52 (346)
                      +++|.+.+++ +-.+.+.+++.|.+++||++.||+..|+.+.
T Consensus        67 ~~qL~qL~eM-GF~d~~~ni~AL~~t~Gdve~AVe~L~~~~~  107 (108)
T 2cwb_A           67 QPQLQQLRDM-GIQDDELSLRALQATGGDIQAALELIFAGGA  107 (108)
T ss_dssp             HHHHHHHHTT-TCCCHHHHHHHHHHHTSCHHHHHHHHHHTSC
T ss_pred             HHHHHHHHHc-CCCCHHHHHHHHHHhCCCHHHHHHHHHhcCC
Confidence            6799999999 7789999999999999999999999998653

>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda}

Probab=95.10  E-value=0.00093  Score=54.10  Aligned_cols=80  Identities=13%  Similarity=0.209  Sum_probs=52.4

Q ss_pred             cCc-EEEEEecCCCCccccccccccCCCHHHHHHhc--cCcEEEEEeecCCCCCCC------------------ChHHHH
Q 036413          145 ENK-WLLVNLQSPKEFTSHTLNRDTWADEAVSQTIR--ASNFIFWQVYDDDDDDDD------------------DSECRK  203 (346)
Q Consensus       145 ~~K-~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~--~~nFVfw~~~~~~~~~~~------------------~~eg~~  203 (346)
                      .+| ++||++.++||..|+.+...+   ..+.+-++  ..++.+..++.+. +.+.                  ......
T Consensus        24 ~gk~~vll~F~a~wC~~C~~~~~~l---~~~~~~~~~~~~~~~v~~v~~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (143)
T 2lus_A           24 KDKDIIGFYFSAHWCPPCRGFTPIL---ADMYSELVDDSAPFEIIFVSSDR-SEDDMFQYMMESHGDWLAIPYRSGPASN   99 (143)
Confidence            467 999999999999998875443   11222221  0366677776662 0000                  011246


Q ss_pred             HHhhcCCCCCceEEEEeCCCCceEEE
Q 036413          204 VCGYYKLDSLPVVLVIDPITGEKMRK  229 (346)
Q Consensus       204 ~~~~y~~~~~P~i~iidp~tge~l~~  229 (346)
                      ++..|++..+|++.|||+ .|+.+..
T Consensus       100 ~~~~~~v~~~P~~~lid~-~G~i~~~  124 (143)
T 2lus_A          100 VTAKYGITGIPALVIVKK-DGTLISM  124 (143)
Confidence            788899999999999997 5887765

>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1

Probab=96.09  E-value=0.011  Score=44.60  Aligned_cols=43  Identities=16%  Similarity=0.186  Sum_probs=38.0

Q ss_pred             hHHHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhhcCC
Q 036413            9 QRKRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNNNSN   52 (346)
Q Consensus         9 ~~~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~~~~   52 (346)
                      .-+++|.+.+++ +-.+.+.+++.|.+++||++.||+..|....
T Consensus        28 ~ye~qi~qL~eM-GF~dr~~~~~AL~~t~Gnve~Ave~L~~~~~   70 (74)
T 1vej_A           28 RYQQELEELKAL-GFANRDANLQALVATDGDIHAAIEMLLGASG   70 (74)
T ss_dssp             TSHHHHHHHHHH-TCCCHHHHHHHHHHTTSCHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHHc-CCCcHHHHHHHHHHhCCCHHHHHHHHHhCCC
Confidence            346789999999 6678999999999999999999999998653

>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=96.04  E-value=0.01  Score=43.36  Aligned_cols=42  Identities=17%  Similarity=0.259  Sum_probs=37.7

Q ss_pred             hHHHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhhcCC
Q 036413            9 QRKRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNNNSN   52 (346)
Q Consensus         9 ~~~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~~~~   52 (346)
                      ..+++|.+.+++  |-+.+.|++.|.+++||++.|++..|++..
T Consensus         8 ~~~~~I~~L~~M--GF~~~~a~~AL~~~~~nve~A~e~L~~~~~   49 (63)
T 1wji_A            8 VDEKALKHITEM--GFSKEASRQALMDNGNNLEAALNVLLTSNK   49 (63)
T ss_dssp             SCHHHHHHHHTT--TCCHHHHHHHHHHTTSCHHHHHHHHHHHSS
T ss_pred             CCHHHHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHHHHCCC
Confidence            356789999999  889999999999999999999999998653

>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A

Probab=96.03  E-value=0.016  Score=48.17  Aligned_cols=93  Identities=12%  Similarity=0.268  Sum_probs=57.0

Q ss_pred             cCcEEEEEecC-CCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChH-HH------------------HH
Q 036413          145 ENKWLLVNLQS-PKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSE-CR------------------KV  204 (346)
Q Consensus       145 ~~K~LlV~l~~-~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~e-g~------------------~~  204 (346)
                      .+||++|++.. ++|..|...-..+  ++...+|=. .++.++.++.+      +++ ..                  .+
T Consensus        34 ~gk~~vl~F~~~~~c~~C~~~~~~l--~~~~~~~~~-~~~~vv~vs~d------~~~~~~~~~~~~~~~~~~~~d~~~~~  104 (163)
T 3gkn_A           34 AGHWLVIYFYPKDSTPGATTEGLDF--NALLPEFDK-AGAKILGVSRD------SVKSHDNFCAKQGFAFPLVSDGDEAL  104 (163)
T ss_dssp             TTSCEEEEECSCTTSHHHHHHHHHH--HHHHHHHHH-TTCEEEEEESS------CHHHHHHHHHHHCCSSCEEECTTCHH
T ss_pred             CCCcEEEEEeCCCCCCcHHHHHHHH--HHHHHHHHH-CCCEEEEEeCC------CHHHHHHHHHHhCCCceEEECCcHHH
Confidence            57899999986 8999887653222  112222223 56888888777      443 22                  34


Q ss_pred             HhhcCCCC------------CceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHH
Q 036413          205 CGYYKLDS------------LPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFME  248 (346)
Q Consensus       205 ~~~y~~~~------------~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~  248 (346)
                      +..|++..            .|++.|||+ .|..+..+.|. .+...++.+.+.++
T Consensus       105 ~~~~~v~~~~~~~~~~~~~~~p~~~lid~-~G~i~~~~~~~-~~~~~~~~il~~l~  158 (163)
T 3gkn_A          105 CRAFDVIKEKNMYGKQVLGIERSTFLLSP-EGQVVQAWRKV-KVAGHADAVLAALK  158 (163)
T ss_dssp             HHHTTCEEEEEETTEEEEEECCEEEEECT-TSCEEEEECSC-CSTTHHHHHHHHHH
T ss_pred             HHHhCCccccccccccccCcceEEEEECC-CCeEEEEEcCC-CcccCHHHHHHHHH
Confidence            45565544            899999997 69988888653 33333444444443

>3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A

Probab=96.03  E-value=0.015  Score=53.60  Aligned_cols=93  Identities=12%  Similarity=0.006  Sum_probs=63.9

Q ss_pred             cCcEEE-EEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChH-----------------------
Q 036413          145 ENKWLL-VNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSE-----------------------  200 (346)
Q Consensus       145 ~~K~Ll-V~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~e-----------------------  200 (346)
                      .+||++ +++-.++|+.|...-..+  +....+|-+ .++.++.++++      +.+                       
T Consensus        32 ~GK~vVL~~fpa~~CpvC~tEl~~l--~~l~~ef~~-~gv~VI~VS~D------s~~~~~~w~~~~~~~~~~~i~fPil~  102 (249)
T 3a2v_A           32 QGKWFVLFSHPADFTPVCTTEFVSF--ARRYEDFQR-LGVDLIGLSVD------SVFSHIKWKEWIERHIGVRIPFPIIA  102 (249)
T ss_dssp             TTCEEEEECCSCTTCHHHHHHHHHH--HHTHHHHHH-TTEEEEEEESS------CHHHHHHHHHHHHHHTCCCCCSCEEE
T ss_pred             CCCEEEEEEEcCCCCcChHHHHHHH--HHHHHHHHh-CCcEEEEEECC------CHHHHHHHHHHHHHhcCCCCceeEEE
Confidence            578864 566788999997653221  122233334 68999999887      433                       


Q ss_pred             --HHHHHhhcCCC-------CCceEEEEeCCCCceEEEEeCCC----ChHHHHHHHHHHH
Q 036413          201 --CRKVCGYYKLD-------SLPVVLVIDPITGEKMRKWCGMV----DPVSLLEDLLSFM  247 (346)
Q Consensus       201 --g~~~~~~y~~~-------~~P~i~iidp~tge~l~~~~G~~----~~~~~i~~L~~fl  247 (346)
                        ...++..|++.       .+|.+.|||| .|.....+.|..    +.++++..|....
T Consensus       103 D~~~~ia~~ygv~~~~~g~~~~p~~fIID~-dG~I~~~~~~~~~~gr~~~Ellr~I~alq  161 (249)
T 3a2v_A          103 DPQGTVARRLGLLHAESATHTVRGVFIVDA-RGVIRTMLYYPMELGRLVDEILRIVKALK  161 (249)
T ss_dssp             CTTSHHHHHHTCCCTTCSSSCCEEEEEECT-TSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred             CCchHHHHHhCCccccCCCcccceEEEECC-CCeEEEEEecCCcccchhHHHHHHHHHHH
Confidence              23567778875       8999999998 588887776643    5788887777654

>2l2d_A OTU domain-containing protein 7A; UBA fold, structural genomics, PSI-biology, protein structur initiative, northeast structural genomics consortium; NMR {Homo sapiens}

Probab=95.90  E-value=0.0096  Score=43.27  Aligned_cols=40  Identities=25%  Similarity=0.517  Sum_probs=37.1

Q ss_pred             hHHHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhh
Q 036413            9 QRKRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNN   49 (346)
Q Consensus         9 ~~~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~   49 (346)
                      +++..|..|+-- ||+++-.||.+|+--||||..|++.|=.
T Consensus        16 dmdavls~fvrs-tgaepgLaRDlleGKnWDl~AAL~D~eq   55 (73)
T 2l2d_A           16 DMDAVLSDFVRS-TGAEPGLARDLLEGKNWDLTAALSDYEQ   55 (73)
T ss_dssp             CHHHHHHHHHHH-HCCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh-cCCCcchhHHhhccCCccHhHHhhhHHH
Confidence            678899999999 8999999999999999999999998854

>4gqc_A Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, fully folded, locally unfolded, peroxide, DTT, structural genomics, riken; 2.00A {Aeropyrum pernix} PDB: 2cx3_A 2cx4_A 4gqf_A

Probab=95.85  E-value=0.041  Score=46.64  Aligned_cols=95  Identities=12%  Similarity=0.104  Sum_probs=63.0

Q ss_pred             hcCcEEEEEec-CCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChH-HHHHH----------------
Q 036413          144 DENKWLLVNLQ-SPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSE-CRKVC----------------  205 (346)
Q Consensus       144 ~~~K~LlV~l~-~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~e-g~~~~----------------  205 (346)
                      .++||+++++. +.||+.|..--..+  ++...+|-+ .++.++.++.+      +++ ..+++                
T Consensus        31 ~~Gk~vvl~f~~~~~cp~C~~e~~~l--~~~~~~~~~-~~v~vv~is~d------~~~~~~~~~~~~~~~fp~l~D~~~~  101 (164)
T 4gqc_A           31 KRGRPAVLIFFPAAFSPVCTKELCTF--RDKMAQLEK-ANAEVLAISVD------SPWCLKKFKDENRLAFNLLSDYNRE  101 (164)
T ss_dssp             HTSSCEEEEECSCTTCCEECSSCEES--CCCGGGGGG-SSSEEEEEESS------CHHHHHHHHHHTTCCSEEEECTTSH
T ss_pred             cCCCEEEEEEeCCCCCCCcccchhhh--hhhHHHhhc-cCceEEEecCC------CHHHHHHHHHhcCcccceeecCchH
Confidence            36899999987 88999997643333  222334445 78888888877      544 23344                


Q ss_pred             --hhcCCC----------CCceEEEEeCCCCceEEEEeC-----CCChHHHHHHHHHHHH
Q 036413          206 --GYYKLD----------SLPVVLVIDPITGEKMRKWCG-----MVDPVSLLEDLLSFME  248 (346)
Q Consensus       206 --~~y~~~----------~~P~i~iidp~tge~l~~~~G-----~~~~~~~i~~L~~fl~  248 (346)
                        ..|++-          ..|.+.|||+ .|.....+.+     ..+.+++++.|.+...
T Consensus       102 v~~~ygv~~~~~~~~~~~~~p~tflID~-~G~I~~~~~~~~~~~~~~~~eil~~l~~l~~  160 (164)
T 4gqc_A          102 VIKLYNVYHEDLKGLKMVAKRAVFIVKP-DGTVAYKWVTDNPLNEPDYDEVVREANKIAG  160 (164)
T ss_dssp             HHHHTTCEEEEETTEEEEECCEEEEECT-TSBEEEEEECSCTTCCCCHHHHHHHHHHHHH
T ss_pred             HHHHcCCcccccccCcCCeeeEEEEECC-CCEEEEEEEeCCCCCCCCHHHHHHHHHHHhc
Confidence              344431          3577889997 6988777654     2467888888877554

>2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A

Probab=95.81  E-value=0.032  Score=46.57  Aligned_cols=96  Identities=7%  Similarity=0.019  Sum_probs=61.5

Q ss_pred             cCcEEEEEecCCC-CccccccccccCCCHHHHHHhcc-CcEEEEEeecCCCCCCC------C--------h-HHHHHHhh
Q 036413          145 ENKWLLVNLQSPK-EFTSHTLNRDTWADEAVSQTIRA-SNFIFWQVYDDDDDDDD------D--------S-ECRKVCGY  207 (346)
Q Consensus       145 ~~K~LlV~l~~~~-~f~c~~lnRdvw~~~~V~~~i~~-~nFVfw~~~~~~~~~~~------~--------~-eg~~~~~~  207 (346)
                      .+||++|++-.+| |..|...-      +.+.++.++ .++.++.++.+..+.-+      .        . ....++..
T Consensus        43 ~gk~~vl~F~~~~~C~~C~~~~------~~l~~l~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  116 (167)
T 2jsy_A           43 KGKVTIISVIPSIDTGVCDAQT------RRFNEEAAKLGDVNVYTISADLPFAQARWCGANGIDKVETLSDHRDMSFGEA  116 (167)
T ss_dssp             TTSCEEEEECSCSTTSHHHHTH------HHHHHHHHHHSSCEEEEEECSSGGGTSCCGGGSSCTTEEEEEGGGTCHHHHH
T ss_pred             CCCeEEEEEecCCCCCchHHHH------HHHHHHHHHcCCCEEEEEECCCHHHHHHHHHhcCCCCceEeeCCchhHHHHH
Confidence            4789999999988 99997653      333333320 25666666665100000      0        0 23456777


Q ss_pred             cCCCC------CceEEEEeCCCCceEEEEeCC-----CChHHHHHHHHHHH
Q 036413          208 YKLDS------LPVVLVIDPITGEKMRKWCGM-----VDPVSLLEDLLSFM  247 (346)
Q Consensus       208 y~~~~------~P~i~iidp~tge~l~~~~G~-----~~~~~~i~~L~~fl  247 (346)
                      |++..      +|++.|||+ .|..+..+.|.     .+.+++++.|.+.+
T Consensus       117 ~~v~~~~~g~~~p~~~lid~-~G~i~~~~~g~~~~~~~~~~~l~~~l~~ll  166 (167)
T 2jsy_A          117 FGVYIKELRLLARSVFVLDE-NGKVVYAEYVSEATNHPNYEKPIEAAKALV  166 (167)
T ss_dssp             TTCBBTTTCSBCCEEEEECT-TSCEEEEEECSBTTSCCCSHHHHHHHHHHH
T ss_pred             hCCccccCCceeeEEEEEcC-CCcEEEEEecCCcCCCCCHHHHHHHHHHhh
Confidence            88754      599999997 69998888652     24578888887654

>2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold, epididymal androgen related protein, struc genomics, structural genomics consortium; 2.00A {Homo sapiens}

Probab=95.78  E-value=0.076  Score=47.42  Aligned_cols=103  Identities=10%  Similarity=0.077  Sum_probs=66.3

Q ss_pred             hhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCC---CCCCChHHHHHHh------hcCCC-
Q 036413          142 GSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDD---DDDDDSECRKVCG------YYKLD-  211 (346)
Q Consensus       142 Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~---~~~~~~eg~~~~~------~y~~~-  211 (346)
                      +.=++|++|||+-.+||.+|..+. ++  ++...+|=. .+|.+++++.+..   +.+...+-..|+.      .|++. 
T Consensus        52 sd~~GKvvll~FwAt~C~~c~e~p-~L--~~l~~~~~~-~g~~Vlgvs~d~f~~~e~~~~~~i~~f~~~~~~~~~~~~~f  127 (215)
T 2i3y_A           52 KQYVGKHILFVNVATYCGLTAQYP-EL--NALQEELKP-YGLVVLGFPCNQFGKQEPGDNKEILPGLKYVRPGGGFVPSF  127 (215)
T ss_dssp             GGGTTSEEEEEEECSSSGGGGGHH-HH--HHHHHHHGG-GTEEEEEEECCCSTTCCCSCHHHHHHHHHHTSSCTTCCCSS
T ss_pred             HHhCCCEEEEEEeCCCCCChHhHH-HH--HHHHHHhcc-CCeEEEEEEccccCcCCCCCHHHHHHHHHhccchhccCccc
Confidence            444689999999999999996442 11  122223333 6788888875410   0011123445555      44320 


Q ss_pred             ---------------------------------------------C---CceEEEEeCCCCceEEEEeCCCChHHHHHHH
Q 036413          212 ---------------------------------------------S---LPVVLVIDPITGEKMRKWCGMVDPVSLLEDL  243 (346)
Q Consensus       212 ---------------------------------------------~---~P~i~iidp~tge~l~~~~G~~~~~~~i~~L  243 (346)
                                                                   .   .|+..|||+ .|+.+.++.|.++++++.+.|
T Consensus       128 pll~d~d~~g~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~p~~~~~i~~npttfLID~-~G~vv~~~~g~~~~~~l~~~I  206 (215)
T 2i3y_A          128 QLFEKGDVNGEKEQKVFSFLKHSCPHPSEILGTFKSISWDPVKVHDIRWNFEKFLVGP-DGIPVMRWSHRATVSSVKTDI  206 (215)
T ss_dssp             EEBCCCCSSSTTCCHHHHHHHHHSCCSCSCCCCTTTCCSSSCCTTCCCSTTCEEEECT-TSCEEEEECTTSCHHHHHHHH
T ss_pred             eeEeeeccCCcccchHHHHHHhhCcccccccccccccccccccccccccCceEEEECC-CCeEEEEeCCCCCHHHHHHHH
Confidence                                                         0   167899996 799999999988999888888


Q ss_pred             HHHHHc
Q 036413          244 LSFMES  249 (346)
Q Consensus       244 ~~fl~~  249 (346)
                      ...+..
T Consensus       207 ~~ll~~  212 (215)
T 2i3y_A          207 LAYLKQ  212 (215)
T ss_dssp             HHHGGG
T ss_pred             HHHHHH
Confidence            877653

>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1

Probab=95.75  E-value=0.016  Score=43.50  Aligned_cols=42  Identities=29%  Similarity=0.345  Sum_probs=37.8

Q ss_pred             hHHHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhhcCC
Q 036413            9 QRKRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNNNSN   52 (346)
Q Consensus         9 ~~~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~~~~   52 (346)
                      -..++|.+.+++  |-+.+.|++.|.+++||++.|++..|++..
T Consensus        28 ~~~~~v~~L~~M--GF~~~~a~~AL~~t~~nve~Ave~L~~~~~   69 (73)
T 1wiv_A           28 IDQSSVDTLLSF--GFAEDVARKALKASGGDIEKATDWVFNNSG   69 (73)
T ss_dssp             SCHHHHHHHHHH--TCCHHHHHHHHHHTTSCHHHHHHHHHHSCC
T ss_pred             CCHHHHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHHHhCCC
Confidence            346789999999  789999999999999999999999998654

>1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A

Probab=95.72  E-value=0.027  Score=47.90  Aligned_cols=75  Identities=16%  Similarity=0.042  Sum_probs=52.1

Q ss_pred             cCcEEEEEecCCC-CccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChH--------------------HHH
Q 036413          145 ENKWLLVNLQSPK-EFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSE--------------------CRK  203 (346)
Q Consensus       145 ~~K~LlV~l~~~~-~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~e--------------------g~~  203 (346)
                      .+||+||++-..| |..|...-      +.+.++.++.++.++.++.+      +++                    ...
T Consensus        43 ~gk~vvl~F~~t~~C~~C~~~~------~~l~~l~~~~~v~vv~Is~D------~~~~~~~~~~~~~~~~~~~l~D~~~~  110 (175)
T 1xvq_A           43 RGKSVLLNIFPSVDTPVCATSV------RTFDERAAASGATVLCVSKD------LPFAQKRFCGAEGTENVMPASAFRDS  110 (175)
T ss_dssp             TTSCEEEEECSCCCSSCCCHHH------HHHHHHHHHTTCEEEEEESS------CHHHHTTCC------CEEEEECTTSS
T ss_pred             CCCEEEEEEEeCCCCchHHHHH------HHHHHHHhhcCCEEEEEECC------CHHHHHHHHHHcCCCCceEeeCCHHH
Confidence            4789999999887 99997652      34444443246677777666      332                    134


Q ss_pred             HHhhcCCCCC---------ceEEEEeCCCCceEEEEeC
Q 036413          204 VCGYYKLDSL---------PVVLVIDPITGEKMRKWCG  232 (346)
Q Consensus       204 ~~~~y~~~~~---------P~i~iidp~tge~l~~~~G  232 (346)
                      ++..|++...         |.+.|||+ .|+.+..+.|
T Consensus       111 ~~~~~gv~~~~~~~~g~~~p~~~lid~-~G~I~~~~~g  147 (175)
T 1xvq_A          111 FGEDYGVTIADGPMAGLLARAIVVIGA-DGNVAYTELV  147 (175)
T ss_dssp             HHHHTTCBBCSSTTTTSBCSEEEEECT-TSBEEEEEEC
T ss_pred             HHHHhCCcccccccCCcccceEEEECC-CCeEEEEEEC
Confidence            6677877654         99999996 6999888864

>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=95.70  E-value=0.019  Score=44.39  Aligned_cols=42  Identities=26%  Similarity=0.394  Sum_probs=38.1

Q ss_pred             HHHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhhcCCC
Q 036413           10 RKRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNNNSNN   53 (346)
Q Consensus        10 ~~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~~~~~   53 (346)
                      ..++|.+++++  |-+.+.|++.|..++||+|.|++-.|++...
T Consensus        21 n~~~I~qL~~M--GF~~~~a~~AL~~~n~n~e~A~ewL~~h~~D   62 (85)
T 2dkl_A           21 MSRLIKQLTDM--GFPREPAEEALKSNNMNLDQAMSALLEKKVD   62 (85)
T ss_dssp             HHHHHHHHHHH--TCCHHHHHHHHHHTTSCHHHHHHHHHTTSCC
T ss_pred             CHHHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHHHCcCC
Confidence            37889999999  8899999999999999999999999987643

>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A

Probab=95.62  E-value=0.043  Score=50.44  Aligned_cols=99  Identities=19%  Similarity=0.240  Sum_probs=69.3

Q ss_pred             ccccCHHHHHHHhhhcCcEEEEEec--CCCCccccccccccCCCHHHHHHhc--cCcEEEEEeecCCCCCCCC---hHHH
Q 036413          130 MFNGSFEKAKDVGSDENKWLLVNLQ--SPKEFTSHTLNRDTWADEAVSQTIR--ASNFIFWQVYDDDDDDDDD---SECR  202 (346)
Q Consensus       130 ~~~gsf~~A~~~Ak~~~K~LlV~l~--~~~~f~c~~lnRdvw~~~~V~~~i~--~~nFVfw~~~~~~~~~~~~---~eg~  202 (346)
                      +-..+|++++    ..++.+||++.  .+||.    | .-+|  +.+.+-+.  ..+++|..++++      .   .+..
T Consensus        21 Lt~~nF~~vi----~~~~~vlV~Fy~~ApWCg----l-~P~~--e~lA~~~~~~~~~v~~akVD~d------~~g~~~n~   83 (248)
T 2c0g_A           21 LDELSFEKTV----ERFPYSVVKFDIASPYGE----K-HEAF--TAFSKSAHKATKDLLIATVGVK------DYGELENK   83 (248)
T ss_dssp             CCTTTHHHHH----TTSSEEEEEEEESSCCSH----H-HHHH--HHHHHHHHHHCSSEEEEEEEEC------SSTTCTTH
T ss_pred             CCHHHHHHHH----hcCCCEEEEEECCCCCCc----c-HHHH--HHHHHHHhccCCCeEEEEEECC------cccccccH
Confidence            3466888865    45789999999  89986    3 1122  23333332  147999999988      4   2357


Q ss_pred             HHHhhcCCC--CCceEEEEeCCCCc--eEEEE--eCCCChHHHHHHHHHHHH
Q 036413          203 KVCGYYKLD--SLPVVLVIDPITGE--KMRKW--CGMVDPVSLLEDLLSFME  248 (346)
Q Consensus       203 ~~~~~y~~~--~~P~i~iidp~tge--~l~~~--~G~~~~~~~i~~L~~fl~  248 (346)
                      .++..|++.  .||++.+.-   |+  .....  .|..+.+.|.+.|.+.+.
T Consensus        84 ~la~~~~V~~~~~PTl~~F~---G~~~~~~~y~~~G~~~~~~L~~fi~~~~~  132 (248)
T 2c0g_A           84 ALGDRYKVDDKNFPSIFLFK---GNADEYVQLPSHVDVTLDNLKAFVSANTP  132 (248)
T ss_dssp             HHHHHTTCCTTSCCEEEEES---SSSSSEEECCTTSCCCHHHHHHHHHHHSS
T ss_pred             HHHHHhCCCcCCCCeEEEEe---CCcCcceeecccCCCCHHHHHHHHHHhhc
Confidence            899999999  999999985   65  24556  788888777776666543

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A

Probab=95.60  E-value=0.044  Score=51.82  Aligned_cols=112  Identities=15%  Similarity=0.205  Sum_probs=76.0

Q ss_pred             cCCCcccccccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHH
Q 036413          123 YRPPVDLMFNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECR  202 (346)
Q Consensus       123 f~PP~~l~~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~  202 (346)
                      -.|....+-..++....   ....+.++|++.+++|..|+.+... |  ..+.+-++ ..+.|..++.+      ..+..
T Consensus       115 ~~p~v~~~~~~~~~~~~---~~~~~~~~v~F~~~~~~~~~~~~~~-~--~~~A~~~~-~~i~f~~vd~~------~~~~~  181 (361)
T 3uem_A          115 QLPLVIEFTEQTAPKIF---GGEIKTHILLFLPKSVSDYDGKLSN-F--KTAAESFK-GKILFIFIDSD------HTDNQ  181 (361)
T ss_dssp             SSCSEEECSTTTHHHHH---SCSCCEEEEEECCSSSSSHHHHHHH-H--HHHHGGGT-TTCEEEEECTT------SGGGH
T ss_pred             CCCcceecCcccHHHHh---cCCCCcEEEEEEeCCchhHHHHHHH-H--HHHHHHcc-CceEEEEecCC------hHHHH
Confidence            34554445566666443   3345567888999999999887411 1  23333445 67788888777      56788


Q ss_pred             HHHhhcCCCC--CceEEEEeCCCCceEEEE---eCCCChHHHHHHHHHHHHc
Q 036413          203 KVCGYYKLDS--LPVVLVIDPITGEKMRKW---CGMVDPVSLLEDLLSFMES  249 (346)
Q Consensus       203 ~~~~~y~~~~--~P~i~iidp~tge~l~~~---~G~~~~~~~i~~L~~fl~~  249 (346)
                      ++++.|++..  +|++++++.  |+....+   .|..+++.+.+-+..+++.
T Consensus       182 ~~~~~fgi~~~~~P~~~~~~~--~~~~~ky~~~~~~~~~~~l~~fi~~~l~g  231 (361)
T 3uem_A          182 RILEFFGLKKEECPAVRLITL--EEEMTKYKPESEELTAERITEFCHRFLEG  231 (361)
T ss_dssp             HHHHHTTCCTTTCSEEEEEEC--C--CCEECCSSCCCCHHHHHHHHHHHHTT
T ss_pred             HHHHHcCCCccCCccEEEEEc--CCcccccCCCccccCHHHHHHHHHHHhcC
Confidence            9999999987  999999996  2222233   2678888888888888764

>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A

Probab=95.59  E-value=0.03  Score=51.20  Aligned_cols=97  Identities=21%  Similarity=0.277  Sum_probs=66.1

Q ss_pred             cccCHHHHHHHhhhcCcEEEEEecC--CCCccccccccccCCCHHHHHHhc-cCcEEEEEeecCCCCCCCC---hHHHHH
Q 036413          131 FNGSFEKAKDVGSDENKWLLVNLQS--PKEFTSHTLNRDTWADEAVSQTIR-ASNFIFWQVYDDDDDDDDD---SECRKV  204 (346)
Q Consensus       131 ~~gsf~~A~~~Ak~~~K~LlV~l~~--~~~f~c~~lnRdvw~~~~V~~~i~-~~nFVfw~~~~~~~~~~~~---~eg~~~  204 (346)
                      -..+|++++    ..++.+||++..  +||.    |. .+|  +.+.+-+. ..+++|..++++      .   .+...+
T Consensus        11 t~~nF~~~i----~~~~~vlV~FyA~~pWCg----l~-P~~--e~lA~~~~~~~~v~~akVDvd------~~g~~~~~~l   73 (240)
T 2qc7_A           11 DTVTFYKVI----PKSKFVLVKFDTQYPYGE----KQ-DEF--KRLAENSASSDDLLVAEVGIS------DYGDKLNMEL   73 (240)
T ss_dssp             CTTHHHHHG----GGCSEEEEEECCSSCCSH----HH-HHH--HHHHHHHTTCTTEEEEEECCC------CSSSCCSHHH
T ss_pred             CHHHHHHHH----cCCCCEEEEEeCCCCCCc----ch-HHH--HHHHHHhcCCCCeEEEEEeCC------cccchhhHHH
Confidence            456687765    357899999999  8886    31 122  22333332 147999999976      3   234679


Q ss_pred             HhhcCCC--CCceEEEEeCCCCc--eEEEEeCCCChHHHHHHHHHH
Q 036413          205 CGYYKLD--SLPVVLVIDPITGE--KMRKWCGMVDPVSLLEDLLSF  246 (346)
Q Consensus       205 ~~~y~~~--~~P~i~iidp~tge--~l~~~~G~~~~~~~i~~L~~f  246 (346)
                      +..|++.  .||++.++-.  |+  ....+.|..+.+.|++.|.+.
T Consensus        74 ~~~~~V~~~~~PTl~~f~~--G~~~~~~~y~G~~~~~~L~~fi~~~  117 (240)
T 2qc7_A           74 SEKYKLDKESYPVFYLFRD--GDFENPVPYTGAVKVGAIQRWLKGQ  117 (240)
T ss_dssp             HHHTTCCGGGCSEEEEEET--TCSSCCEECCSCSCHHHHHHHHHHT
T ss_pred             HHHcCCCCCCCCEEEEEeC--CCcCcceeecCCCCHHHHHHHHHHh
Confidence            9999999  9999999963  65  355678988876666555543

>4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A

Probab=95.53  E-value=0.045  Score=45.80  Aligned_cols=91  Identities=12%  Similarity=0.092  Sum_probs=53.9

Q ss_pred             hcCcEEEEEec-CCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHH-HHHHh---------------
Q 036413          144 DENKWLLVNLQ-SPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSEC-RKVCG---------------  206 (346)
Q Consensus       144 ~~~K~LlV~l~-~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg-~~~~~---------------  206 (346)
                      -.+|+++|++. .+||..|..--..+  .+...++-+ .+++++.++.+      +++. .++++               
T Consensus        28 ~~Gk~vvl~f~~~~~c~~C~~e~~~l--~~~~~~~~~-~~~~~v~vs~d------~~~~~~~~~~~~~~~~p~l~D~~~~   98 (157)
T 4g2e_A           28 LKGKVVVLAFYPAAFTQVCTKEMCTF--RDSMAKFNQ-VNAVVLGISVD------PPFSNKAFKEHNKLNFTILSDYNRE   98 (157)
T ss_dssp             GTTSCEEEEECSCTTCCC------CC--SCGGGGGGG-CSSEEEEEESS------CHHHHHHHHHHTTCCSEEEECTTSH
T ss_pred             HCCCeEEEEecCCCCCCccccchhhc--ccccccccc-cCceEeeeccc------chhHHHHHHHHcCCcEEEEEcCCcH
Confidence            35789999987 88999997643333  223344445 78889988887      5543 33443               


Q ss_pred             ---hcCCC-----------CCceEEEEeCCCCceEEEEeC-----CCChHHHHHHHH
Q 036413          207 ---YYKLD-----------SLPVVLVIDPITGEKMRKWCG-----MVDPVSLLEDLL  244 (346)
Q Consensus       207 ---~y~~~-----------~~P~i~iidp~tge~l~~~~G-----~~~~~~~i~~L~  244 (346)
                         .|++.           ..|++.|||+ .|.....+.|     ..+.+++++.|.
T Consensus        99 v~~~ygv~~~~~~~~~~~~~~p~tflID~-~G~I~~~~~~~~~~~~~~~~eil~~l~  154 (157)
T 4g2e_A           99 VVKKYNVAWEFPALPGYVLAKRAVFVIDK-EGKVRYKWVSDDPTKEPPYDEIEKVVK  154 (157)
T ss_dssp             HHHHTTCEEECTTSTTCEEECEEEEEECT-TSBEEEEEEESSTTCCCCHHHHHHHHH
T ss_pred             HHHHcCCccccccCCCcceeeeeEEEECC-CCEEEEEEECCCCCCCCCHHHHHHHHH
Confidence               44431           3567889997 6888777654     234556655543

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A

Probab=95.50  E-value=0.047  Score=48.04  Aligned_cols=91  Identities=9%  Similarity=0.110  Sum_probs=58.7

Q ss_pred             hcCcEEEEEec-----CCCCccccccccccCCCHHH-HHHh-ccCcEEEEEeecCCCCCCCChHHHHHHhhcCCCCCceE
Q 036413          144 DENKWLLVNLQ-----SPKEFTSHTLNRDTWADEAV-SQTI-RASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVV  216 (346)
Q Consensus       144 ~~~K~LlV~l~-----~~~~f~c~~lnRdvw~~~~V-~~~i-~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~i  216 (346)
                      +..+.++|.+.     ++||..|+.|-.. |  ..+ .++. . .+..|..++.+      .  ...++..|++..||++
T Consensus        18 ~~~~~v~v~~~~~~~~~~~C~~c~~~~~~-~--~~~a~~~~~~-~~v~~~~vd~~------~--~~~l~~~~~v~~~Ptl   85 (229)
T 2ywm_A           18 EFKEPVSIKLFSQAIGCESCQTAEELLKE-T--VEVIGEAVGQ-DKIKLDIYSPF------T--HKEETEKYGVDRVPTI   85 (229)
T ss_dssp             HCCSCEEEEEECCCTTCGGGGHHHHHHHH-H--HHHHHHHHCT-TTEEEEEECTT------T--CHHHHHHTTCCBSSEE
T ss_pred             hccCCeEEEEEccCCCCcccHHHHHHHHH-H--HHHHhccCCC-CceEEEEecCc------c--cHHHHHHcCCCcCcEE
Confidence            33445555554     4455556555322 1  111 2222 4 67888887666      2  4679999999999999


Q ss_pred             EEEeCCCCceEEEEeCCCChHHHHHHHHHHHH
Q 036413          217 LVIDPITGEKMRKWCGMVDPVSLLEDLLSFME  248 (346)
Q Consensus       217 ~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~  248 (346)
                      .+..  .|.....+.|..+.+++.+.+...+.
T Consensus        86 ~~~~--~~~~~~~~~G~~~~~~l~~~~~~~~~  115 (229)
T 2ywm_A           86 VIEG--DKDYGIRYIGLPAGLEFTTLINGIFH  115 (229)
T ss_dssp             EEES--SSCCCEEEESCCCTTHHHHHHHHHHH
T ss_pred             EEEC--CCcccceecCCccHHHHHHHHHHHHh
Confidence            9996  35666778898777777777766654

>4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis}

Probab=95.48  E-value=0.13  Score=43.59  Aligned_cols=33  Identities=21%  Similarity=0.475  Sum_probs=25.7

Q ss_pred             ceEEEEeCCCCceEEEEeCC--CChHHHHHHHHHHH
Q 036413          214 PVVLVIDPITGEKMRKWCGM--VDPVSLLEDLLSFM  247 (346)
Q Consensus       214 P~i~iidp~tge~l~~~~G~--~~~~~~i~~L~~fl  247 (346)
                      |.+.|||| .|..+..+.|.  .+.+++++.|..-+
T Consensus       135 ~~~~liD~-~G~i~~~~~g~~~~~~~~l~~~ik~Ll  169 (170)
T 4hde_A          135 TSFYLIDQ-NGKVMKKYSGISNTPYEDIIRDMKRLA  169 (170)
T ss_dssp             CEEEEECT-TSCEEEEEESSSSCCHHHHHHHHHHHH
T ss_pred             eEEEEEcC-CCeEEEEECCCCCCCHHHHHHHHHHHh
Confidence            68899997 69998888884  35677888877654

>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.39  E-value=0.015  Score=42.33  Aligned_cols=42  Identities=24%  Similarity=0.389  Sum_probs=37.7

Q ss_pred             hHHHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhhcCC
Q 036413            9 QRKRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNNNSN   52 (346)
Q Consensus         9 ~~~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~~~~   52 (346)
                      ...++|.+.+++  |-+.+.|+..|.+++||+|.|++-.|++..
T Consensus         8 ~~~~~v~~L~~M--GF~~~~a~~AL~~t~~nve~A~e~L~~~~~   49 (63)
T 2dak_A            8 PPEDCVTTIVSM--GFSRDQALKALRATNNSLERAVDWIFSHID   49 (63)
T ss_dssp             CCHHHHHHHHHH--TCCHHHHHHHHHHTTSCSHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence            456789999999  789999999999999999999999998653

>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}

Probab=95.26  E-value=0.0099  Score=45.45  Aligned_cols=49  Identities=16%  Similarity=0.264  Sum_probs=34.7

Q ss_pred             EEEEEcCCCccc---------------------cC-CcceEEecCCCCCCCCcc-CCcccchhhcCCCceeEEE
Q 036413          293 RIGVRLPDGQEA---------------------NQ-TRQFRLTRPDPGAPKPLD-YNSKMTFQESGLNNSVILV  343 (346)
Q Consensus       293 rIqiRlpdG~ri---------------------~~-~~~f~l~~~~P~~~~~l~-~~~d~TieeagL~n~~vl~  343 (346)
                      +|+||+++|+.+                     .. ...++|...||+  +.+. .+.+.||+++||++++.++
T Consensus         2 ~i~vr~~~G~~~v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~--k~l~l~~~~~tL~~~gl~~g~~l~   73 (86)
T 2kzr_A            2 RVRCKAKGGTHLLQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPP--ECLDLSDRDITLGDLPIQSGDMLI   73 (86)
T ss_dssp             CEEEEETTEEEEECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCC--CCCCCCCSSCBTTTSSCCTTCEEE
T ss_pred             EEEEEcCCCCEEeeecCCCCCHHHHHHHHHHHhCCCccceEEEeCCCC--cccccCCCCCCHHHcCCCCCCEEE
Confidence            589999999764                     11 245778878886  4453 3367899999999666554

>3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A

Probab=95.24  E-value=0.073  Score=45.06  Aligned_cols=102  Identities=13%  Similarity=0.100  Sum_probs=62.7

Q ss_pred             cCcEEEEEecCCCCc-cccccccccCCCHHHHHHhcc--CcEEEEEeecCCCCCCC------------------------
Q 036413          145 ENKWLLVNLQSPKEF-TSHTLNRDTWADEAVSQTIRA--SNFIFWQVYDDDDDDDD------------------------  197 (346)
Q Consensus       145 ~~K~LlV~l~~~~~f-~c~~lnRdvw~~~~V~~~i~~--~nFVfw~~~~~~~~~~~------------------------  197 (346)
                      .+||+||++-.+||. .|......+   ..+.+-+.+  .++.++.++.+.  .+.                        
T Consensus        27 ~Gk~vll~F~~t~C~~~C~~~~~~l---~~~~~~~~~~~~~~~vv~is~d~--~d~~~~~~~~~~~~~~~~~~w~~l~~~  101 (170)
T 3me7_A           27 KGKPIILSPIYTHCRAACPLITKSL---LKVIPKLGTPGKDFWVITFTFDP--KDTLEDIKRFQKEYGIDGKGWKVVKAK  101 (170)
T ss_dssp             TTSCEEEEEECTTCCSHHHHHHHHH---HTTHHHHCCBTTTBEEEEEECCT--TCCHHHHHHHHHHTTCCSSSEEEEEES
T ss_pred             CCCEEEEEEECCCCCchhHHHHHHH---HHHHHHhhhcCCceEEEEEECCC--CCCHHHHHHHHHHcCCCCCCeEEEeCC
Confidence            389999999999996 475432211   111111210  345555555441  000                        


Q ss_pred             -ChHHHHHHhhcCC---------CCCceEEEEeCCCCceEEEEeCC-CChHHHHHHHHHHHHcCCc
Q 036413          198 -DSECRKVCGYYKL---------DSLPVVLVIDPITGEKMRKWCGM-VDPVSLLEDLLSFMESGPR  252 (346)
Q Consensus       198 -~~eg~~~~~~y~~---------~~~P~i~iidp~tge~l~~~~G~-~~~~~~i~~L~~fl~~~~~  252 (346)
                       ..+..++++.|++         ...|.+.|||| .|+.+..+.|. .++++++..|.+.......
T Consensus       102 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~lID~-~G~i~~~~~g~~~~~~~i~~~l~~~~~~~~~  166 (170)
T 3me7_A          102 TSEDLFKLLDAIDFRFMTAGNDFIHPNVVVVLSP-ELQIKDYIYGVNYNYLEFVNALRLARGEGHH  166 (170)
T ss_dssp             SHHHHHHHHHHTTCCCEEETTEEECCCEEEEECT-TSBEEEEEESSSCCHHHHHHHHHHHTTCSCT
T ss_pred             CHHHHHHHHHHCCeEEecCCCccccCceEEEECC-CCeEEEEEeCCCCCHHHHHHHHHHhhccccc
Confidence             1244566666553         34588999997 69988888995 6889999998887755443

>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum}

Probab=95.17  E-value=0.097  Score=46.75  Aligned_cols=93  Identities=13%  Similarity=0.115  Sum_probs=60.2

Q ss_pred             cCcEEEEEec-CCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChH-H---------------------
Q 036413          145 ENKWLLVNLQ-SPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSE-C---------------------  201 (346)
Q Consensus       145 ~~K~LlV~l~-~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~e-g---------------------  201 (346)
                      .+||+||++- .+||..|..--..+  ++...+|-. .++.++.++.+      +.+ .                     
T Consensus        55 ~Gk~vvl~F~patwCp~C~~e~p~l--~~l~~~~~~-~~v~vv~Is~D------~~~~~~~~~~~~~~~~g~~~~~fp~l  125 (221)
T 2c0d_A           55 GQKYCCLLFYPLNYTFVCPTEIIEF--NKHIKDFEN-KNVELLGISVD------SVYSHLAWKNMPIEKGGIGNVEFTLV  125 (221)
T ss_dssp             TTCEEEEEECCCCTTTCCHHHHHHH--HHTHHHHHH-TTEEEEEEESS------CHHHHHHHHHSCGGGTCCCSCSSEEE
T ss_pred             CCCeEEEEEEcCCCCCchHHHHHHH--HHHHHHHHH-CCCEEEEEeCC------CHHHHHHHHHHhhhhcCccCCceEEE
Confidence            6799999998 99999997542211  111122223 56777777766      332 1                     


Q ss_pred             ----HHHHhhcCC-----CCCceEEEEeCCCCceEEEEeCC----CChHHHHHHHHHHH
Q 036413          202 ----RKVCGYYKL-----DSLPVVLVIDPITGEKMRKWCGM----VDPVSLLEDLLSFM  247 (346)
Q Consensus       202 ----~~~~~~y~~-----~~~P~i~iidp~tge~l~~~~G~----~~~~~~i~~L~~fl  247 (346)
                          ..++..|++     ...|++.|||+ .|..+..+.|.    .+++++++.|....
T Consensus       126 ~D~~~~~~~~ygv~~~~g~~~P~~~lID~-~G~I~~~~~g~~~~~~~~~ell~~l~~L~  183 (221)
T 2c0d_A          126 SDINKDISKNYNVLYDNSFALRGLFIIDK-NGCVRHQTVNDLPIGRNVQEVLRTIDSII  183 (221)
T ss_dssp             ECTTSHHHHHTTCEETTTEECEEEEEECT-TSBEEEEEEECTTCCCCHHHHHHHHHHHH
T ss_pred             ECCchHHHHHcCCcccCCCccceEEEECC-CCeEEEEEecCCCCCCCHHHHHHHHHHHh
Confidence                234445555     25799999996 69988887663    35677877777654

>2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics consortium, SGC; 1.80A {Homo sapiens}

Probab=94.99  E-value=0.075  Score=46.91  Aligned_cols=90  Identities=17%  Similarity=0.101  Sum_probs=60.1

Q ss_pred             cCcEEEEEec-CCCCccccccccccCCCHHHHHHh---ccCcEEEEEeecCCCCCCCChH-H------------------
Q 036413          145 ENKWLLVNLQ-SPKEFTSHTLNRDTWADEAVSQTI---RASNFIFWQVYDDDDDDDDDSE-C------------------  201 (346)
Q Consensus       145 ~~K~LlV~l~-~~~~f~c~~lnRdvw~~~~V~~~i---~~~nFVfw~~~~~~~~~~~~~e-g------------------  201 (346)
                      .+||+||++. ..||..|..--      +.+.++.   ++.++.++.++.+      +++ .                  
T Consensus        47 ~Gk~vvl~F~pat~C~~C~~e~------~~l~~l~~~~~~~~v~vv~Is~D------~~~~~~~~~~~~~~~~g~~~~~f  114 (211)
T 2pn8_A           47 RGKYLVFFFYPLDFTFVCPTEI------IAFGDRLEEFRSINTEVVACSVD------SQFTHLAWINTPRRQGGLGPIRI  114 (211)
T ss_dssp             TTSEEEEEECSCTTSSHHHHHH------HHHHHTHHHHHTTTEEEEEEESS------CHHHHHHHHTSCGGGTCCCSCSS
T ss_pred             CCCeEEEEEECCCCCCCCHHHH------HHHHHHHHHHHHCCCEEEEEECC------CHHHHHHHHHHhhhccCccCCce
Confidence            5799999998 89999996532      2233322   2257888887776      332 1                  


Q ss_pred             -------HHHHhhcCCC------CCceEEEEeCCCCceEEEEeCCC----ChHHHHHHHHHHH
Q 036413          202 -------RKVCGYYKLD------SLPVVLVIDPITGEKMRKWCGMV----DPVSLLEDLLSFM  247 (346)
Q Consensus       202 -------~~~~~~y~~~------~~P~i~iidp~tge~l~~~~G~~----~~~~~i~~L~~fl  247 (346)
                             ..++..|++.      ..|++.|||+ .|..+..+.|..    +++++++.|....
T Consensus       115 p~l~D~~~~~~~~ygv~~~~~g~~~p~~~lID~-~G~I~~~~~g~~~~~~~~~ell~~l~~l~  176 (211)
T 2pn8_A          115 PLLSDLTHQISKDYGVYLEDSGHTLRGLFIIDD-KGILRQITLNDLPVGRSVDETLRLVQAFQ  176 (211)
T ss_dssp             CEEECTTSHHHHHTTCEETTTTEECEEEEEECT-TSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred             EEEECCchHHHHHcCCcccCCCcccceEEEECC-CCEEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence                   2344455552      4899999997 699888876642    5677888777654

>2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus}

Probab=94.95  E-value=0.13  Score=43.10  Aligned_cols=32  Identities=13%  Similarity=0.069  Sum_probs=24.8

Q ss_pred             CceEEEEeCCCCceEEEEeC-----CCChHHHHHHHHH
Q 036413          213 LPVVLVIDPITGEKMRKWCG-----MVDPVSLLEDLLS  245 (346)
Q Consensus       213 ~P~i~iidp~tge~l~~~~G-----~~~~~~~i~~L~~  245 (346)
                      .|++.|||+ .|..+..+.|     ..+++++++.|.+
T Consensus       133 ~p~~~liD~-~G~i~~~~~~~~~~~~~~~~~ll~~l~~  169 (171)
T 2yzh_A          133 ARAVFIIDK-EGKVAYVQLVPEITEEPNYDEVVNKVKE  169 (171)
T ss_dssp             CCEEEEECT-TSBEEEEEECSBTTSCCCCHHHHHHHHH
T ss_pred             eeEEEEEcC-CCeEEEEEeCCCcCCCCCHHHHHHHHHh
Confidence            599999997 6998888764     3457888887765

>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=94.88  E-value=0.037  Score=40.02  Aligned_cols=44  Identities=11%  Similarity=0.267  Sum_probs=39.9

Q ss_pred             hhHHHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhhcCCC
Q 036413            8 KQRKRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNNNSNN   53 (346)
Q Consensus         8 ~~~~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~~~~~   53 (346)
                      +.+.+.|.+.+++  |=+.+.|+.-|+++++|+|.|++=-|.+...
T Consensus        17 ~se~e~V~~LvsM--GFs~~qA~kALKat~~NvErAaDWLFSH~D~   60 (63)
T 1wgn_A           17 PSERQCVETVVNM--GYSYECVLRAMKKKGENIEQILDYLFAHSGP   60 (63)
T ss_dssp             HHHHHHHHHHHHH--HCCHHHHHHHHHHHCSCHHHHHHHHHHHSCC
T ss_pred             cchHHHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHHhCCCC
Confidence            5678889999999  8999999999999999999999999987643

>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A

Probab=94.86  E-value=0.048  Score=38.04  Aligned_cols=37  Identities=16%  Similarity=0.153  Sum_probs=33.7

Q ss_pred             HHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhh
Q 036413           11 KRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNN   49 (346)
Q Consensus        11 ~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~   49 (346)
                      .+.|++.|++  |-|.+.|++.|..++||++.|.+.-.+
T Consensus        12 ~~~Ia~Lm~m--GFsr~~ai~AL~~a~nnve~AaniLle   48 (52)
T 2ooa_A           12 DAKIAKLMGE--GYAFEEVKRALEIAQNNVEVARSILRE   48 (52)
T ss_dssp             HHHHHHHHHT--TCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence            3899999999  999999999999999999999887543

>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1

Probab=94.81  E-value=0.037  Score=40.40  Aligned_cols=42  Identities=21%  Similarity=0.297  Sum_probs=37.3

Q ss_pred             HHHHHHhhhcccCCCCHHHHHHHHHHc-CCCHHHHHHHHhhcCCC
Q 036413           10 RKRVISSFLEITNGQTEETALKILNAT-NWNLDKAILRFNNNSNN   53 (346)
Q Consensus        10 ~~~~i~~F~~iTt~~~~~~A~~~L~~~-~wdle~Av~~f~~~~~~   53 (346)
                      ..++|.+++++  |-+.+.|++.|.++ |||+|.|++-.|++...
T Consensus         9 ~~~~v~~L~~M--GF~~~~a~~AL~~t~~~nve~A~ewLl~~~~d   51 (64)
T 1whc_A            9 ELTALESLIEM--GFPRGRAEKALALTGNQGIEAAMDWLMEHEDD   51 (64)
T ss_dssp             CCCHHHHHHTT--TCCHHHHHHHHHHHTSCCHHHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHc--CCCHHHHHHHHHHhcCCCHHHHHHHHHhCCCC
Confidence            45689999999  89999999999999 79999999999997643

>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.79  E-value=0.044  Score=42.14  Aligned_cols=41  Identities=17%  Similarity=0.273  Sum_probs=37.7

Q ss_pred             HHHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhhcCC
Q 036413           10 RKRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNNNSN   52 (346)
Q Consensus        10 ~~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~~~~   52 (346)
                      ..+.|.+.+++  |=+.+.|++.|.+++||+|.|++-.|++..
T Consensus        29 ~e~~i~~L~~M--GF~~~~a~~AL~~t~~nve~A~ewL~~~~~   69 (83)
T 2dai_A           29 DEAALRQLTEM--GFPENRATKALQLNHMSVPQAMEWLIEHAE   69 (83)
T ss_dssp             CHHHHHHHHHH--TCCHHHHHHHHHHTTSCHHHHHHHHHHGGG
T ss_pred             CHHHHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHHHHCCC
Confidence            56789999999  899999999999999999999999998654

>1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=94.74  E-value=0.064  Score=41.76  Aligned_cols=80  Identities=16%  Similarity=0.130  Sum_probs=52.1

Q ss_pred             CcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCCCCceEEEEeCCCCc
Q 036413          146 NKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVLVIDPITGE  225 (346)
Q Consensus       146 ~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~i~iidp~tge  225 (346)
                      .+..+|.+..+||..|+.+.+ ++.     + +. .++-|..++++      +++...++..|+ .+.|.+ +++   |+
T Consensus        15 ~~~~v~~f~~~~C~~C~~~~~-~L~-----~-l~-~~i~~~~vdi~------~~~~~el~~~~g-~~vP~l-~~~---g~   75 (100)
T 1wjk_A           15 ALPVLTLFTKAPCPLCDEAKE-VLQ-----P-YK-DRFILQEVDIT------LPENSTWYERYK-FDIPVF-HLN---GQ   75 (100)
T ss_dssp             CCCEEEEEECSSCHHHHHHHH-HTS-----T-TS-SSSEEEEEETT------SSTTHHHHHHSS-SSCSEE-EES---SS
T ss_pred             CCCEEEEEeCCCCcchHHHHH-HHH-----H-hh-hCCeEEEEECC------CcchHHHHHHHC-CCCCEE-EEC---CE
Confidence            345677788899999987732 111     1 22 45667777887      445578889999 999976 444   66


Q ss_pred             eEEEEeCCCChHHHHHHHHHH
Q 036413          226 KMRKWCGMVDPVSLLEDLLSF  246 (346)
Q Consensus       226 ~l~~~~G~~~~~~~i~~L~~f  246 (346)
                      .+ .+ |..+++.+.+.|..+
T Consensus        76 ~~-~~-~g~~~~~l~~~l~~~   94 (100)
T 1wjk_A           76 FL-MM-HRVNTSKLEKQLRKL   94 (100)
T ss_dssp             EE-EE-SSCCHHHHHHHHHSS
T ss_pred             EE-Ee-cCCCHHHHHHHHHHH
Confidence            54 33 446777665555443

>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1

Probab=94.64  E-value=0.068  Score=39.42  Aligned_cols=42  Identities=14%  Similarity=0.177  Sum_probs=37.7

Q ss_pred             HHHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhhcCC
Q 036413           10 RKRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNNNSN   52 (346)
Q Consensus        10 ~~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~~~~   52 (346)
                      -.+.|.+.+++ +-.+.+.+++.|.++++|++.||+.-|....
T Consensus        19 y~~ql~qL~~M-GF~d~~an~~AL~at~Gnve~Ave~L~~~~~   60 (67)
T 2dna_A           19 FSKEMECLQAM-GFVNYNANLQALIATDGDTNAAIYKLKSSQG   60 (67)
T ss_dssp             THHHHHHHHHH-TCCCHHHHHHHHHHTTSCHHHHHHHHHHCCS
T ss_pred             HHHHHHHHHHc-CCCcHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence            35689999999 7789999999999999999999999999764

>1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A

Probab=94.60  E-value=0.17  Score=43.44  Aligned_cols=93  Identities=16%  Similarity=0.123  Sum_probs=59.6

Q ss_pred             cCcEEEEEec-CCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChH-HHHHHhhc--------------
Q 036413          145 ENKWLLVNLQ-SPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSE-CRKVCGYY--------------  208 (346)
Q Consensus       145 ~~K~LlV~l~-~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~e-g~~~~~~y--------------  208 (346)
                      .+||+||++. ..+|..|..--..+  +....+|-+ .++.++.++.+      +++ ..+++..+              
T Consensus        29 ~Gk~vvl~F~~~~~Cp~C~~e~~~l--~~~~~~~~~-~~v~vv~Is~d------~~~~~~~~~~~~~~~~~~~fp~l~D~   99 (186)
T 1n8j_A           29 EGRWSVFFFYPADFTFVSPTELGDV--ADHYEELQK-LGVDVYSVSTD------THFTHKAWHSSSETIAKIKYAMIGDP   99 (186)
T ss_dssp             TTSEEEEEECSCTTCSHHHHHHHHH--HHHHHHHHH-TTEEEEEEESS------CHHHHHHHHHHCTTGGGCCSEEEECT
T ss_pred             CCCeEEEEEECCCCCCccHHHHHHH--HHHHHHHHH-CCCEEEEEECC------CHHHHHHHHHHcCcccCCceeEEECC
Confidence            4799999997 48999886542211  112222333 57888888777      443 23344433              


Q ss_pred             --------CCC------CCceEEEEeCCCCceEEEEeCCC----ChHHHHHHHHHHH
Q 036413          209 --------KLD------SLPVVLVIDPITGEKMRKWCGMV----DPVSLLEDLLSFM  247 (346)
Q Consensus       209 --------~~~------~~P~i~iidp~tge~l~~~~G~~----~~~~~i~~L~~fl  247 (346)
                              ++.      ..|++.|||+ .|..+..+.|..    +.+++++.|....
T Consensus       100 ~~~~~~~ygv~~~~~g~~~p~~~lID~-~G~i~~~~~~~~~~~~~~~~l~~~l~~l~  155 (186)
T 1n8j_A          100 TGALTRNFDNMREDEGLADRATFVVDP-QGIIQAIEVTAEGIGRDASDLLRKIKAAQ  155 (186)
T ss_dssp             TSHHHHHTTCEETTTTEECEEEEEECT-TSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred             chHHHHHhCCccCCCCceeeEEEEECC-CCeEEEEEecCCCCCCCHHHHHHHHHHHH
Confidence                    332      2599999997 699888887743    4777877777654

>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10

Probab=94.59  E-value=0.11  Score=42.88  Aligned_cols=92  Identities=11%  Similarity=0.089  Sum_probs=56.2

Q ss_pred             CcEEEEEec-CCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChH-------------------HHHHH
Q 036413          146 NKWLLVNLQ-SPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSE-------------------CRKVC  205 (346)
Q Consensus       146 ~K~LlV~l~-~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~e-------------------g~~~~  205 (346)
                      +||++|++. ..||..|...-..+  ++...+|-+ .+ .++.++.+      +++                   ...++
T Consensus        35 ~~~vvl~f~~~~~c~~C~~~~~~l--~~~~~~~~~-~~-~vv~is~d------~~~~~~~~~~~~~~~~~~l~D~~~~~~  104 (159)
T 2a4v_A           35 NRVVVFFVYPRASTPGSTRQASGF--RDNYQELKE-YA-AVFGLSAD------SVTSQKKFQSKQNLPYHLLSDPKREFI  104 (159)
T ss_dssp             CSEEEEEECSSSSSHHHHHHHHHH--HHHHHHHTT-TC-EEEEEESC------CHHHHHHHHHHHTCSSEEEECTTCHHH
T ss_pred             CCeEEEEEcCCCCCCCHHHHHHHH--HHHHHHHHh-CC-cEEEEeCC------CHHHHHHHHHHhCCCceEEECCccHHH
Confidence            458888875 78888886432111  111122222 44 55566555      322                   12455


Q ss_pred             hhcCCCCCc------eEEEEeCCCCceEEEEeCCCC---hHHHHHHHHHHHHc
Q 036413          206 GYYKLDSLP------VVLVIDPITGEKMRKWCGMVD---PVSLLEDLLSFMES  249 (346)
Q Consensus       206 ~~y~~~~~P------~i~iidp~tge~l~~~~G~~~---~~~~i~~L~~fl~~  249 (346)
                      ..|++...|      +..|| + .|..+..+.|...   .+.+++.|.+.++.
T Consensus       105 ~~~gv~~~p~~g~~~~~~li-~-~G~i~~~~~g~~~~~~~~~~~~~l~~~l~~  155 (159)
T 2a4v_A          105 GLLGAKKTPLSGSIRSHFIF-V-DGKLKFKRVKISPEVSVNDAKKEVLEVAEK  155 (159)
T ss_dssp             HHHTCBSSSSSCBCCEEEEE-E-TTEEEEEEESCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHhCCcccccCCccceEEEE-c-CCEEEEEEccCCccccHHHHHHHHHHHHHH
Confidence            667776677      77788 6 6999888888543   46777778777764

>3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic reticulum, oxidoreductase; HET: CSO; 1.91A {Homo sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A 3tks_A 3tkr_A 3tks_C

Probab=94.55  E-value=0.055  Score=49.59  Aligned_cols=91  Identities=13%  Similarity=0.019  Sum_probs=57.2

Q ss_pred             cCcEEEEEec-CCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHH----------------------
Q 036413          145 ENKWLLVNLQ-SPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSEC----------------------  201 (346)
Q Consensus       145 ~~K~LlV~l~-~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg----------------------  201 (346)
                      .+||+||++. ..+|+.|..--..+  ++...+|-. .++.++.++.+      +.+.                      
T Consensus        90 kGK~vvL~F~~a~~cp~C~~el~~l--~~l~~~~~~-~gv~vv~IS~D------~~~~~~~~~~~~~~~~g~~~~~fp~l  160 (254)
T 3tjj_A           90 RGKYLVFFFYPLDFTFVCPTEIIAF--GDRLEEFRS-INTEVVACSVD------SQFTHLAWINTPRRQGGLGPIRIPLL  160 (254)
T ss_dssp             TTSEEEEEECSCTTCSSCCHHHHHH--HHTHHHHHT-TTEEEEEEESS------CHHHHHHHHTSCGGGTSCCSCSSCEE
T ss_pred             CCCeEEEEEECCCCCCchHHHHHHH--HHHHHHHHH-cCCEEEEEcCC------CHHHHHHHHHHHHHhcCCccccccee
Confidence            5799999998 78999997532111  112222323 67888888777      4332                      


Q ss_pred             ----HHHHhhcCCC------CCceEEEEeCCCCceEEEEeCC----CChHHHHHHHHH
Q 036413          202 ----RKVCGYYKLD------SLPVVLVIDPITGEKMRKWCGM----VDPVSLLEDLLS  245 (346)
Q Consensus       202 ----~~~~~~y~~~------~~P~i~iidp~tge~l~~~~G~----~~~~~~i~~L~~  245 (346)
                          ..++..|++.      .+|.+.|||+ .|....++.|.    .+.++++..|..
T Consensus       161 ~D~~~~va~~ygv~~~~~g~~~p~tflID~-~G~I~~~~~~~~~~~~~~~eil~~L~a  217 (254)
T 3tjj_A          161 SDLTHQISKDYGVYLEDSGHTLRGLFIIDD-KGILRQITLNDLPVGRSVDETLRLVQA  217 (254)
T ss_dssp             ECTTSHHHHHHTCEETTTTEECEEEEEECT-TSBEEEEEEECTTCCCCHHHHHHHHHH
T ss_pred             eCcHHHHHHHcCCccccCCCccceEEEECC-CCeEEEEEecCCCCCCCHHHHHHHHHh
Confidence                2344445542      4799999997 69888776652    245666666554

>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=94.53  E-value=0.065  Score=39.08  Aligned_cols=40  Identities=20%  Similarity=0.202  Sum_probs=36.2

Q ss_pred             HHHHHhhhcccCCCCHHHHHHHHHHcCC-CHHHHHHHHhhcCC
Q 036413           11 KRVISSFLEITNGQTEETALKILNATNW-NLDKAILRFNNNSN   52 (346)
Q Consensus        11 ~~~i~~F~~iTt~~~~~~A~~~L~~~~w-dle~Av~~f~~~~~   52 (346)
                      .+.|.+.+++  |=+.+.|++.|.+++| |+|.|++-.|++..
T Consensus        20 e~~i~~L~~M--GF~~~~a~~AL~~t~~~nve~A~ewL~~~~~   60 (64)
T 2cpw_A           20 GSALDVLLSM--GFPRARAQKALASTGGRSVQTACDWLFSHSG   60 (64)
T ss_dssp             CCHHHHHHHH--TCCHHHHHHHHHHTTTSCHHHHHHHHHSCCS
T ss_pred             HHHHHHHHHc--CCCHHHHHHHHHHcCCCCHHHHHHHHHhCCC
Confidence            3579999999  8899999999999999 99999999998654

>3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A {Larimichthys crocea}

Probab=94.42  E-value=0.066  Score=48.48  Aligned_cols=88  Identities=17%  Similarity=0.097  Sum_probs=57.9

Q ss_pred             cCcEEEEEecC-CCCccccccccccCCCHHHHHHhc---cCcEEEEEeecCCCCCCCChHH-------------------
Q 036413          145 ENKWLLVNLQS-PKEFTSHTLNRDTWADEAVSQTIR---ASNFIFWQVYDDDDDDDDDSEC-------------------  201 (346)
Q Consensus       145 ~~K~LlV~l~~-~~~f~c~~lnRdvw~~~~V~~~i~---~~nFVfw~~~~~~~~~~~~~eg-------------------  201 (346)
                      .+||+||++.. .+|+.|..--      +.+.++.+   +.++.++.++.+      +.+.                   
T Consensus        76 ~Gk~vvL~F~~~~~cp~C~~el------~~l~~l~~~~~~~gv~vv~Is~D------~~~~~~~~~~~~~~~~~~~~~~f  143 (240)
T 3qpm_A           76 RGKYLVFFFYPLDFTFVCPTEI------IAFSDRVHEFRAINTEVVACSVD------SQFTHLAWIITPRKQGGLGPMKI  143 (240)
T ss_dssp             TTSEEEEEECSCTTSSHHHHHH------HHHHHHHHHHHTTTEEEEEEESS------CHHHHHHHHHSCGGGTCCCSCSS
T ss_pred             CCCEEEEEEECCCCCCchHHHH------HHHHHHHHHHHHCCCEEEEEECC------CHHHHHHHHHHHHhhcCCCCCce
Confidence            57999999987 8999996532      23333322   257888888777      4332                   


Q ss_pred             -------HHHHhhcCCC------CCceEEEEeCCCCceEEEEeCCC----ChHHHHHHHHH
Q 036413          202 -------RKVCGYYKLD------SLPVVLVIDPITGEKMRKWCGMV----DPVSLLEDLLS  245 (346)
Q Consensus       202 -------~~~~~~y~~~------~~P~i~iidp~tge~l~~~~G~~----~~~~~i~~L~~  245 (346)
                             ..++..|++.      .+|.+.|||+ .|.....+.|..    +.+++++.|..
T Consensus       144 p~l~D~~~~v~~~ygv~~~~~g~~~p~~flID~-~G~I~~~~~~~~~~~~~~~eil~~l~~  203 (240)
T 3qpm_A          144 PLLSDLTHQISKDYGVYLEDQGHTLRGLFIIDE-KGVLRQITMNDLPVGRSVDETLRLVQA  203 (240)
T ss_dssp             CEEECTTSHHHHHTTCEETTTTEECEEEEEECT-TSBEEEEEEECTTBCCCHHHHHHHHHH
T ss_pred             eEEeCchHHHHHHhCCccccCCCccceEEEEcC-CCeEEEEEecCCCCCCCHHHHHHHHHH
Confidence                   2344555554      5799999997 699887766532    35666666654

>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.27  E-value=0.064  Score=36.45  Aligned_cols=39  Identities=18%  Similarity=0.333  Sum_probs=34.9

Q ss_pred             hHHHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhhc
Q 036413            9 QRKRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNNN   50 (346)
Q Consensus         9 ~~~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~~   50 (346)
                      -..++|.+.+++  |-+.+.|+..|.+++ |+|.|++-.|++
T Consensus         8 ~~~~~v~~L~~M--GF~~~~a~~AL~~~~-n~e~A~~~L~~h   46 (47)
T 2ekk_A            8 VNQQQLQQLMDM--GFTREHAMEALLNTS-TMEQATEYLLTH   46 (47)
T ss_dssp             SCHHHHHHHHHH--HCCHHHHHHHHHHSC-SHHHHHHHHHTC
T ss_pred             CCHHHHHHHHHc--CCCHHHHHHHHHHcC-CHHHHHHHHHcC
Confidence            456789999999  889999999999997 999999988874

>3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa}

Probab=94.25  E-value=0.12  Score=44.10  Aligned_cols=93  Identities=17%  Similarity=0.227  Sum_probs=56.5

Q ss_pred             hcCcEEEEEec-CCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChH-HHHHH----------------
Q 036413          144 DENKWLLVNLQ-SPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSE-CRKVC----------------  205 (346)
Q Consensus       144 ~~~K~LlV~l~-~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~e-g~~~~----------------  205 (346)
                      -.+||++|++. ..||..|..-...+  .....+|-. .++.++.++.+      +++ ..+++                
T Consensus        49 ~~Gk~vvl~f~~~~~c~~C~~el~~l--~~l~~~~~~-~~~~vv~Vs~D------~~~~~~~~~~~~~~~f~~l~D~~~~  119 (179)
T 3ixr_A           49 YTNQWLVLYFYPKDNTPGSSTEGLEF--NLLLPQFEQ-INATVLGVSRD------SVKSHDSFCAKQGFTFPLVSDSDAI  119 (179)
T ss_dssp             GTTSEEEEEECSCTTSHHHHHHHHHH--HHHHHHHHT-TTEEEEEEESC------CHHHHHHHHHHHTCCSCEEECTTCH
T ss_pred             HCCCCEEEEEEcCCCCCchHHHHHHH--HHHHHHHHH-CCCEEEEEcCC------CHHHHHHHHHHcCCceEEEECCchH
Confidence            35789999997 78899886543221  112222333 67888888877      433 23343                


Q ss_pred             --hhcCCC------------CCceEEEEeCCCCceEEEEeCCC---ChHHHHHHHHHH
Q 036413          206 --GYYKLD------------SLPVVLVIDPITGEKMRKWCGMV---DPVSLLEDLLSF  246 (346)
Q Consensus       206 --~~y~~~------------~~P~i~iidp~tge~l~~~~G~~---~~~~~i~~L~~f  246 (346)
                        ..|++.            ..|++.|||+ .|..+..+.|..   ..+++++.|...
T Consensus       120 ~~~~~gv~~~~~~~g~~~~~~~p~~~lID~-~G~I~~~~~~~~~~~~~~~il~~l~~l  176 (179)
T 3ixr_A          120 LCKAFDVIKEKTMYGRQVIGIERSTFLIGP-THRIVEAWRQVKVPGHAEEVLNKLKAH  176 (179)
T ss_dssp             HHHHTTCEEEECCC--CEEEECCEEEEECT-TSBEEEEECSCCSTTHHHHHHHHHHHH
T ss_pred             HHHHcCCcccccccCcccCCcceEEEEECC-CCEEEEEEcCCCCCCCHHHHHHHHHHH
Confidence              444442            1588999997 699888886532   235555555543

>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=94.15  E-value=0.084  Score=37.00  Aligned_cols=38  Identities=16%  Similarity=0.113  Sum_probs=34.2

Q ss_pred             HHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhhc
Q 036413           11 KRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNNN   50 (346)
Q Consensus        11 ~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~~   50 (346)
                      ++.|.+.|++  |-|.+.|++-|..++||+|.|.+.-.+.
T Consensus        10 e~~I~~L~~l--GF~r~~ai~AL~~a~nnve~Aa~iL~ef   47 (53)
T 2d9s_A           10 SSEIERLMSQ--GYSYQDIQKALVIAHNNIEMAKNILREF   47 (53)
T ss_dssp             HHHHHHHHHH--TCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHc--CCCHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence            3569999999  9999999999999999999999986653

>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.04  E-value=0.089  Score=39.48  Aligned_cols=43  Identities=16%  Similarity=0.184  Sum_probs=37.7

Q ss_pred             hHHHHHHhhhcccCCCCHHHHHHHHHHcC-CCHHHHHHHHhhcCCC
Q 036413            9 QRKRVISSFLEITNGQTEETALKILNATN-WNLDKAILRFNNNSNN   53 (346)
Q Consensus         9 ~~~~~i~~F~~iTt~~~~~~A~~~L~~~~-wdle~Av~~f~~~~~~   53 (346)
                      -..+.|.+.+++  |-+.+.|++.|.+++ ||+|.|++-.|++...
T Consensus         8 ~~e~~v~~L~~M--GF~~~~a~~AL~~t~n~~ve~A~ewL~~~~~d   51 (74)
T 2dag_A            8 LDESVIIQLVEM--GFPMDACRKAVYYTGNSGAEAAMNWVMSHMDD   51 (74)
T ss_dssp             SCHHHHHHHHHH--SCCHHHHHHHHHHHTSCCHHHHHHHHHHHTTS
T ss_pred             CCHHHHHHHHHc--CCCHHHHHHHHHHhCCCCHHHHHHHHHhCCCC
Confidence            356789999999  889999999999998 5899999999997643

>1ttz_A Conserved hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A

Probab=93.87  E-value=0.11  Score=39.78  Aligned_cols=75  Identities=21%  Similarity=0.187  Sum_probs=48.5

Q ss_pred             EEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCCCCceEEEEeCCCCceEEE
Q 036413          150 LVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVLVIDPITGEKMRK  229 (346)
Q Consensus       150 lV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~i~iidp~tge~l~~  229 (346)
                      +|.+..+||..|..+.       .+.+-+. ..+ +..+|+++     ++   .++..|++. .|.|.+   ..|+.+. 
T Consensus         3 vv~f~a~~C~~C~~~~-------~~L~~~~-~~~-~~~vdid~-----~~---~l~~~~g~~-vPtl~~---~~G~~v~-   60 (87)
T 1ttz_A            3 LTLYQRDDCHLCDQAV-------EALAQAR-AGA-FFSVFIDD-----DA---ALESAYGLR-VPVLRD---PMGRELD-   60 (87)
T ss_dssp             EEEEECSSCHHHHHHH-------HHHHHTT-CCC-EEEEECTT-----CH---HHHHHHTTT-CSEEEC---TTCCEEE-
T ss_pred             EEEEECCCCchHHHHH-------HHHHHHH-Hhh-eEEEECCC-----CH---HHHHHhCCC-cCeEEE---ECCEEEe-
Confidence            5677889999998873       2222233 332 34567762     33   377788987 999887   3587763 


Q ss_pred             EeCCCChHHHHHHHHHHHH
Q 036413          230 WCGMVDPVSLLEDLLSFME  248 (346)
Q Consensus       230 ~~G~~~~~~~i~~L~~fl~  248 (346)
                        |..+++.+.+.|...++
T Consensus        61 --g~~~~~~L~~~l~~~~~   77 (87)
T 1ttz_A           61 --WPFDAPRLRAWLDAAPH   77 (87)
T ss_dssp             --SCCCHHHHHHHHHTCC-
T ss_pred             --CCCCHHHHHHHHHHHHH
Confidence              77888776666655443

>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2

Probab=93.68  E-value=0.063  Score=39.26  Aligned_cols=38  Identities=16%  Similarity=0.194  Sum_probs=34.2

Q ss_pred             HHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhh
Q 036413           11 KRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNN   49 (346)
Q Consensus        11 ~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~   49 (346)
                      .+.|....+. ||.....|+.-|+.+|||++.||..--.
T Consensus        10 ~~~Vk~LRe~-TGag~~dcKkAL~e~~GDi~~Ai~~Lr~   47 (64)
T 2cp9_A           10 KELLMKLRRK-TGYSFVNCKKALETCGGDLKQAEIWLHK   47 (64)
T ss_dssp             CHHHHHHHHH-HCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred             HHHHHHHHHH-hCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence            4678899999 8999999999999999999999987654

>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4

Probab=93.67  E-value=0.089  Score=36.41  Aligned_cols=43  Identities=14%  Similarity=0.125  Sum_probs=37.3

Q ss_pred             hHHHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhhcC
Q 036413            9 QRKRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNNNS   51 (346)
Q Consensus         9 ~~~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~~~   51 (346)
                      +.++.+...+++=-..+..++++.|+.++||++.||+..++..
T Consensus         3 ~~e~~v~~L~EMFP~~~~~~ik~~L~~~~Gd~d~Ai~~LL~~~   45 (49)
T 1otr_A            3 DHESKLSILMDMFPAISKSKLQVHLLENNNDLDLTIGLLLKEN   45 (49)
T ss_dssp             SHHHHHHHHHHHCSSSCHHHHHHHHHHTTTCSHHHHHHHHHHT
T ss_pred             hhHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhcc
Confidence            3457778888887888999999999999999999999988764

>2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A

Probab=93.67  E-value=0.066  Score=41.79  Aligned_cols=67  Identities=9%  Similarity=0.110  Sum_probs=43.9

Q ss_pred             cEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCCh---HHHHHHhhcCCCCCceEEEEeCCC
Q 036413          147 KWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDS---ECRKVCGYYKLDSLPVVLVIDPIT  223 (346)
Q Consensus       147 K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~---eg~~~~~~y~~~~~P~i~iidp~t  223 (346)
                      +.|+| +..+||..|+.+..      .+.+ +. ..|.+..++.+      ..   ....++..|++..+|++ +++   
T Consensus        20 ~~vv~-f~a~~C~~C~~~~~------~l~~-~~-~~~~~v~v~~~------~~~~~~~~~l~~~~~v~~~Pt~-~~~---   80 (116)
T 2e7p_A           20 APVVV-FSKTYCGYCNRVKQ------LLTQ-VG-ASYKVVELDEL------SDGSQLQSALAHWTGRGTVPNV-FIG---   80 (116)
T ss_dssp             SSEEE-EECTTCHHHHHHHH------HHHH-HT-CCCEEEEGGGS------TTHHHHHHHHHHHHSCCSSCEE-EET---
T ss_pred             CCEEE-EECCCChhHHHHHH------HHHH-cC-CCeEEEEccCC------CChHHHHHHHHHHhCCCCcCEE-EEC---
Confidence            45666 88999999988742      2333 34 56776665544      21   12457888999999999 554   


Q ss_pred             CceEEEEeC
Q 036413          224 GEKMRKWCG  232 (346)
Q Consensus       224 ge~l~~~~G  232 (346)
                      |+.+..+.|
T Consensus        81 g~~v~~~~~   89 (116)
T 2e7p_A           81 GKQIGGCDT   89 (116)
T ss_dssp             TEEEECHHH
T ss_pred             CEEECChHH
Confidence            776655544

>1vdl_A Ubiquitin carboxyl-terminal hydrolase 25; UBA domain, mouse cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.5.2.1

Probab=93.62  E-value=0.12  Score=38.70  Aligned_cols=42  Identities=19%  Similarity=0.252  Sum_probs=38.3

Q ss_pred             HHHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhhcC
Q 036413           10 RKRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNNNS   51 (346)
Q Consensus        10 ~~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~~~   51 (346)
                      ++-+|.|..+||+..|...-.+.|+++++||..||...-+..
T Consensus        24 ~q~lLnQLrEITGiqD~~~L~~ALkas~Gdl~~AV~~LT~~~   65 (80)
T 1vdl_A           24 QQTFLNQLREITGINDAQILQQALKDSNGNLELAVAFLTAKN   65 (80)
T ss_dssp             HHHHHHHHHHHSCCCCHHHHHHHHHHHTSCHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHhccCCHHHHHHHHhccc
Confidence            555899999999999999999999999999999999888754

>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=93.60  E-value=0.085  Score=37.25  Aligned_cols=42  Identities=14%  Similarity=0.271  Sum_probs=37.5

Q ss_pred             HHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhhcCCC
Q 036413           11 KRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNNNSNN   53 (346)
Q Consensus        11 ~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~~~~~   53 (346)
                      ..++.++.++ +=.|.+..++.|..+||||+.||..-+..+.+
T Consensus        10 a~~L~~L~eM-GF~D~~~N~~aL~~~~gnv~~aI~~Ll~~~~~   51 (54)
T 2cp8_A           10 AALMAHLFEM-GFCDRQLNLRLLKKHNYNILQVVTELLQLSGP   51 (54)
T ss_dssp             HHHHHHHHHH-TCCCHHHHHHHHTTTTTCHHHHHHHHHHHSSS
T ss_pred             HHHHHHHHHc-CCCcHHHHHHHHHHcCCCHHHHHHHHHhccCC
Confidence            3489999999 88899999999999999999999998876544

>1jkg_B TAP; NTF2-like domain, transport protein; 1.90A {Homo sapiens} SCOP: d.17.4.2 PDB: 1jn5_B 1go5_A

Probab=93.52  E-value=0.013  Score=54.01  Aligned_cols=43  Identities=19%  Similarity=0.394  Sum_probs=0.0

Q ss_pred             hhHHHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhhcC
Q 036413            8 KQRKRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNNNS   51 (346)
Q Consensus         8 ~~~~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~~~   51 (346)
                      ..+.++|.+|+.. ||-+.+-|..+|+.+|||++.|+..|-+..
T Consensus       196 ~~q~~~v~~~~~~-T~mn~~~s~~cL~~~~Wd~~~A~~~F~~l~  238 (250)
T 1jkg_B          196 PEQQEMLQAFSTQ-SGMNLEWSQKCLQDNNWDYTRSAQAFTHLK  238 (250)
T ss_dssp             --------------------------------------------
T ss_pred             HHHHHHHHHHHHH-hCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            3566899999999 999999999999999999999999998854

>3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} SCOP: c.47.1.0

Probab=93.43  E-value=0.23  Score=41.44  Aligned_cols=41  Identities=17%  Similarity=0.070  Sum_probs=27.5

Q ss_pred             HHHhhcCCCC------CceEEEEeCCCCceEEEEeC-----CCChHHHHHHHH
Q 036413          203 KVCGYYKLDS------LPVVLVIDPITGEKMRKWCG-----MVDPVSLLEDLL  244 (346)
Q Consensus       203 ~~~~~y~~~~------~P~i~iidp~tge~l~~~~G-----~~~~~~~i~~L~  244 (346)
                      .++..|++..      .|++.|||+ .|..+..+.+     ..+.+++++.|.
T Consensus       113 ~~~~~~gv~~~~~g~~~p~~~liD~-~G~i~~~~~~~~~~~~~~~~~il~~l~  164 (166)
T 3p7x_A          113 SFGENYGVVMEELRLLARAVFVLDA-DNKVVYKEIVSEGTDFPDFDAALAAYK  164 (166)
T ss_dssp             HHHHHHTCEETTTTEECCEEEEECT-TCBEEEEEECSBTTSCCCHHHHHHHHH
T ss_pred             HHHHHhCCccccCCceeeEEEEECC-CCeEEEEEEcCCcccCCCHHHHHHHHh
Confidence            4555666542      799999996 6998877543     234566666654

>1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10

Probab=93.22  E-value=0.54  Score=38.98  Aligned_cols=88  Identities=13%  Similarity=-0.010  Sum_probs=50.8

Q ss_pred             cCcEEEEEec-CCCCccccccccccCCCHHHHHHhcc-CcEEEEEeecCCCCCCCChH---------------------H
Q 036413          145 ENKWLLVNLQ-SPKEFTSHTLNRDTWADEAVSQTIRA-SNFIFWQVYDDDDDDDDDSE---------------------C  201 (346)
Q Consensus       145 ~~K~LlV~l~-~~~~f~c~~lnRdvw~~~~V~~~i~~-~nFVfw~~~~~~~~~~~~~e---------------------g  201 (346)
                      .+||++|++- +.||..|..--      +.+.++.++ .++.++.++.+      +++                     .
T Consensus        41 ~gk~vvl~F~~~~~c~~C~~~~------~~l~~~~~~~~~v~vv~is~d------~~~~~~~~~~~~~~~~~~~l~D~~~  108 (163)
T 1psq_A           41 DGKKKVLSVVPSIDTGICSTQT------RRFNEELAGLDNTVVLTVSMD------LPFAQKRWCGAEGLDNAIMLSDYFD  108 (163)
T ss_dssp             TTSEEEEEECSCTTSHHHHHHH------HHHHHHTTTCTTEEEEEEESS------CHHHHHHHHHHHTCTTSEEEECTTT
T ss_pred             CCCEEEEEEECCCCCCccHHHH------HHHHHHHHHcCCcEEEEEECC------CHHHHHHHHHhcCCCCcEEecCCch
Confidence            5688888886 47888886431      222222220 13444444443      211                     1


Q ss_pred             HHHHhhcCCC----C--CceEEEEeCCCCceEEEEeCC-----CChHHHHHHHHH
Q 036413          202 RKVCGYYKLD----S--LPVVLVIDPITGEKMRKWCGM-----VDPVSLLEDLLS  245 (346)
Q Consensus       202 ~~~~~~y~~~----~--~P~i~iidp~tge~l~~~~G~-----~~~~~~i~~L~~  245 (346)
                      ..++..|++.    .  .|++.|||+ .|..+..+.|.     .+.+++++.|.+
T Consensus       109 ~~~~~~~gv~~~~~g~~~p~~~liD~-~G~i~~~~~g~~~~~~~~~~~~l~~l~~  162 (163)
T 1psq_A          109 HSFGRDYALLINEWHLLARAVFVLDT-DNTIRYVEYVDNINSEPNFEAAIAAAKA  162 (163)
T ss_dssp             CHHHHHHTCBCTTTCSBCCEEEEECT-TCBEEEEEECSBTTSCCCHHHHHHHHHH
T ss_pred             hHHHHHhCCccccCCceEEEEEEEcC-CCeEEEEEecCCcCCCCCHHHHHHHHHh
Confidence            2455555553    2  399999997 69988888762     233777776653

>1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A

Probab=92.89  E-value=0.21  Score=45.07  Aligned_cols=102  Identities=9%  Similarity=0.063  Sum_probs=62.7

Q ss_pred             hhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCc--EEEEEeecCC--------------------------C
Q 036413          142 GSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASN--FIFWQVYDDD--------------------------D  193 (346)
Q Consensus       142 Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~n--FVfw~~~~~~--------------------------~  193 (346)
                      +....|..++.+.+++|..|+.|..      .+.+++++.+  |++..+..-.                          +
T Consensus        93 G~~~ak~~v~~F~D~~Cp~C~~~~~------~l~~~~~~g~v~v~~~~~p~~~~~s~~~a~a~~~a~d~~~~~~~~~~~~  166 (241)
T 1v58_A           93 GKKDAPVIVYVFADPFCPYCKQFWQ------QARPWVDSGKVQLRTLLVGVIKPESPATAAAILASKDPAKTWQQYEASG  166 (241)
T ss_dssp             SCTTCSEEEEEEECTTCHHHHHHHH------HHHHHHHTTSEEEEEEECCCSSTTHHHHHHHHHHSSSHHHHHHHHHHTT
T ss_pred             CCCCCCeEEEEEECCCChhHHHHHH------HHHHHHhCCcEEEEEEECCcCCCcHHHHHHHHHHccCHHHHHHHHHHHh
Confidence            4556788999999999999999964      4566666222  2322221100                          0


Q ss_pred             -----C--CCCC-------hHHHHHHhhcCCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHHcCC
Q 036413          194 -----D--DDDD-------SECRKVCGYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMESGP  251 (346)
Q Consensus       194 -----~--~~~~-------~eg~~~~~~y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~~~~  251 (346)
                           +  +..+       .+..+++..|++...|++.|.+. +|+ +.++.|..++++|.+.|.+.+.++-
T Consensus       167 ~~~~l~~~~~~~~~~~~~v~~~~~l~~~~gv~gtPt~vi~~~-~G~-~~~~~G~~~~~~L~~~l~~~~~~~~  236 (241)
T 1v58_A          167 GKLKLNVPANVSTEQMKVLSDNEKLMDDLGANVTPAIYYMSK-ENT-LQQAVGLPDQKTLNIIMGNKLQHHH  236 (241)
T ss_dssp             TCCCCCCCSSCCHHHHHHHHHHHHHHHHHTCCSSCEEEEEET-TTE-EEEEESSCCHHHHHHHTTC------
T ss_pred             ccCCCCccccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECC-CCC-EEEecCCCCHHHHHHHHHHHHHhhc
Confidence                 0  0001       12345667889999999999885 575 3667899999888887777665543

>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A

Probab=92.24  E-value=0.39  Score=42.32  Aligned_cols=93  Identities=14%  Similarity=0.108  Sum_probs=60.6

Q ss_pred             hhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCc--EEEEEeecCCCC--------------------------
Q 036413          143 SDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASN--FIFWQVYDDDDD--------------------------  194 (346)
Q Consensus       143 k~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~n--FVfw~~~~~~~~--------------------------  194 (346)
                      ...+|..+|.+.+++|..|+.+...      +.++.+ .+  +++..+.....+                          
T Consensus        83 ~~~~k~~vv~F~d~~Cp~C~~~~~~------l~~l~~-~~v~v~~~~~p~~~~~~~s~~~a~a~~~a~d~~~~~~~~~~~  155 (216)
T 1eej_A           83 APQEKHVITVFTDITCGYCHKLHEQ------MADYNA-LGITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDDVMAG  155 (216)
T ss_dssp             CTTCCEEEEEEECTTCHHHHHHHTT------HHHHHH-TTEEEEEEECCTTCSSSHHHHHHHHHHTSSSHHHHHHHHHTT
T ss_pred             CCCCCEEEEEEECCCCHHHHHHHHH------HHHHHh-CCcEEEEEECCccCCCchHHHHHHHHHhccCHHHHHHHHHhC
Confidence            4567999999999999999999654      555554 33  333332211000                          


Q ss_pred             --------CCCChHHHHHHhhcCCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHH
Q 036413          195 --------DDDDSECRKVCGYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFME  248 (346)
Q Consensus       195 --------~~~~~eg~~~~~~y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~  248 (346)
                              ...-.+...++..|++...|++.|.+   |.   ++.|..++++|.+.|.....
T Consensus       156 ~~~~~~~~~~~v~~~~~l~~~~gV~gtPt~v~~d---G~---~~~G~~~~~~l~~~l~~~~~  211 (216)
T 1eej_A          156 KSVAPASCDVDIADHYALGVQLGVSGTPAVVLSN---GT---LVPGYQPPKEMKEFLDEHQK  211 (216)
T ss_dssp             CCCCCCCCSCCHHHHHHHHHHHTCCSSSEEECTT---SC---EEESCCCHHHHHHHHHHHHH
T ss_pred             CCCChhHHHHHHHHHHHHHHHcCCCccCEEEEcC---Ce---EecCCCCHHHHHHHHHHhhh
Confidence                    00123456678889999999995434   54   35798888888887776543

>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1

Probab=92.15  E-value=0.24  Score=38.05  Aligned_cols=42  Identities=12%  Similarity=0.241  Sum_probs=37.4

Q ss_pred             HHHHHHhhhcccCCCCHHHHHHHHHHc-CCCHHHHHHHHhhcCCC
Q 036413           10 RKRVISSFLEITNGQTEETALKILNAT-NWNLDKAILRFNNNSNN   53 (346)
Q Consensus        10 ~~~~i~~F~~iTt~~~~~~A~~~L~~~-~wdle~Av~~f~~~~~~   53 (346)
                      ..+.|.+.+++  |-+.+.|++.|..+ |||++.|++-.|++...
T Consensus        29 ~e~~v~~L~~M--GF~~~~a~~AL~~t~n~n~e~A~ewL~~h~~d   71 (84)
T 1vek_A           29 NEEIVAQLVSM--GFSQLHCQKAAINTSNAGVEEAMNWLLSHMDD   71 (84)
T ss_dssp             CHHHHHHHHHH--TCCHHHHHHHHHHTTTCCHHHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHc--CCCHHHHHHHHHHHcCCCHHHHHHHHHhCCCc
Confidence            57889999999  89999999999988 59999999999997643

>3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin, thioredoxin-fold, ROS PR; 1.74A {Yersinia pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A 4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A

Probab=91.98  E-value=0.84  Score=39.66  Aligned_cols=89  Identities=15%  Similarity=0.012  Sum_probs=55.4

Q ss_pred             hhhcCcEEEEEec-CCCCccccccccccCCCHHHHHHhcc-CcEEEEEeecCCCCCCCChH-------------------
Q 036413          142 GSDENKWLLVNLQ-SPKEFTSHTLNRDTWADEAVSQTIRA-SNFIFWQVYDDDDDDDDDSE-------------------  200 (346)
Q Consensus       142 Ak~~~K~LlV~l~-~~~~f~c~~lnRdvw~~~~V~~~i~~-~nFVfw~~~~~~~~~~~~~e-------------------  200 (346)
                      +.-.+|+++|++. +.||..|..-.      +.+.++.++ .++.++.++.+      +++                   
T Consensus        74 ~d~~Gk~vvl~F~~~~~c~~C~~e~------~~l~~l~~~~~~v~vv~Is~D------~~~~~~~~~~~~~~~~f~~l~D  141 (200)
T 3zrd_A           74 SSFAGKRKVLNIFPSIDTGVCAASV------RKFNQLAGELENTVVLCISSD------LPFAQSRFCGAEGLSNVITLST  141 (200)
T ss_dssp             GGGTTSEEEEEECSCCCCSCCCHHH------HHHHHHHHTSTTEEEEEEESS------CHHHHTTCTTTTTCTTEEEEET
T ss_pred             HHhCCCcEEEEEECCCCCchhHHHH------HHHHHHHHHhCCCEEEEEECC------CHHHHHHHHHHcCCCCceEEec
Confidence            3345799999997 67899986532      334444441 25777777666      222                   


Q ss_pred             --HHHHHhhcCCC---------CCceEEEEeCCCCceEEEEeCC-----CChHHHHHHH
Q 036413          201 --CRKVCGYYKLD---------SLPVVLVIDPITGEKMRKWCGM-----VDPVSLLEDL  243 (346)
Q Consensus       201 --g~~~~~~y~~~---------~~P~i~iidp~tge~l~~~~G~-----~~~~~~i~~L  243 (346)
                        ...++..|++.         ..|.+.|||+ .|..+..+.|.     .+.+++++.|
T Consensus       142 ~~~~~~~~~ygv~~~~~~~~g~~~p~~~lID~-~G~I~~~~~~~~~~~~~~~~~~l~~L  199 (200)
T 3zrd_A          142 LRGADFKQAYGVAITEGPLAGLTARAVVVLDG-QDNVIYSELVNEITTEPNYDAALAAL  199 (200)
T ss_dssp             TSCTHHHHHTTCEECSSTTTTSBCCEEEEECT-TSBEEEEEECSBTTSCCCHHHHHHHH
T ss_pred             CchHHHHHHhCceeecccCCCccccEEEEECC-CCeEEEEEecCCcccCCCHHHHHHhh
Confidence              23455555553         2599999996 69988876542     3455555554

>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4

Probab=91.49  E-value=0.36  Score=34.55  Aligned_cols=43  Identities=16%  Similarity=0.161  Sum_probs=37.1

Q ss_pred             HHHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhhcCC
Q 036413           10 RKRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNNNSN   52 (346)
Q Consensus        10 ~~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~~~~   52 (346)
                      .++.|.++.++=-.-|.++.+..|++|++|+|.||+..++...
T Consensus         9 ~ee~l~~L~emFP~ld~~~I~~vL~a~~gdvd~aI~~LL~m~~   51 (59)
T 1wgl_A            9 SEEDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLLQMGE   51 (59)
T ss_dssp             CHHHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHHHHHHHSSC
T ss_pred             CHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHcCcC
Confidence            4567777777777889999999999999999999999998654

>1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein structure initiative; 1.90A {Haemophilus influenzae} SCOP: c.47.1.10

Probab=91.32  E-value=0.7  Score=38.42  Aligned_cols=81  Identities=16%  Similarity=0.048  Sum_probs=46.8

Q ss_pred             cCcEEEEEec-CCCCccccccccccCCCHHHHHHhcc-CcEEEEEeecCC------CCCC----C-----ChHHHHHHhh
Q 036413          145 ENKWLLVNLQ-SPKEFTSHTLNRDTWADEAVSQTIRA-SNFIFWQVYDDD------DDDD----D-----DSECRKVCGY  207 (346)
Q Consensus       145 ~~K~LlV~l~-~~~~f~c~~lnRdvw~~~~V~~~i~~-~nFVfw~~~~~~------~~~~----~-----~~eg~~~~~~  207 (346)
                      .+||++|++- +.||..|..--      +.+.++.++ .++.++.++.+.      +-+.    .     ++....++..
T Consensus        42 ~gk~vvl~f~~~~~c~~C~~e~------~~l~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~  115 (165)
T 1q98_A           42 ASKRKVLNIFPSIDTGVCATSV------RKFNQQAAKLSNTIVLCISADLPFAQARFCGAEGIENAKTVSTFRNHALHSQ  115 (165)
T ss_dssp             TTSEEEEEECSCSCSSCCCHHH------HHHHHHHHHSTTEEEEEEESSCHHHHTTCTTTTTCTTEEEEECTTCTHHHHH
T ss_pred             CCCeEEEEEECCCCCCccHHHH------HHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHcCCCceEEeeccccchHHHH
Confidence            5789999996 78999986432      223333220 245555555441      0000    0     1112445566


Q ss_pred             cCCCC---------CceEEEEeCCCCceEEEEeC
Q 036413          208 YKLDS---------LPVVLVIDPITGEKMRKWCG  232 (346)
Q Consensus       208 y~~~~---------~P~i~iidp~tge~l~~~~G  232 (346)
                      |++..         .|+..|||+ .|..+..+.|
T Consensus       116 ~gv~~~~~~~~g~~~p~~~liD~-~G~i~~~~~~  148 (165)
T 1q98_A          116 LGVDIQTGPLAGLTSRAVIVLDE-QNNVLHSQLV  148 (165)
T ss_dssp             TTCEECSSTTTTSBCCEEEEECT-TSBEEEEEEC
T ss_pred             hCceecccccCCccceeEEEEcC-CCEEEEEEeC
Confidence            66532         499999997 6998888865

>2lva_A Ubiquitin carboxyl-terminal hydrolase 28; UIM, ubiquitin interacting motif, UBA domain, NESG, northeas structural genomics consortium, SGC; NMR {Homo sapiens}

Probab=90.11  E-value=0.046  Score=44.79  Aligned_cols=42  Identities=19%  Similarity=0.235  Sum_probs=37.9

Q ss_pred             HHHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhhcC
Q 036413           10 RKRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNNNS   51 (346)
Q Consensus        10 ~~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~~~   51 (346)
                      .+-+|.|..+||+..|...=.+.|+++|+||+.||..+-+..
T Consensus        18 ~Q~lLNQLrEITGIqD~~~L~~ALkAsnGdl~qAV~~LT~~~   59 (129)
T 2lva_A           18 GQMLLNQLREITGIQDPSFLHEALKASNGDITQAVSLLTDER   59 (129)
Confidence            444899999999999999999999999999999999988764

>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP}

Probab=90.39  E-value=0.3  Score=45.91  Aligned_cols=88  Identities=8%  Similarity=0.050  Sum_probs=54.9

Q ss_pred             ccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCC-hHHHHHHhhcCC
Q 036413          132 NGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDD-SECRKVCGYYKL  210 (346)
Q Consensus       132 ~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~-~eg~~~~~~y~~  210 (346)
                      .+..+.++....++.+  +|.+..+||..|+.+.      +.+.++-  +.+-+..++..     +. .+...+++.|++
T Consensus       185 s~~~~~~la~~l~~~~--vV~F~A~WC~~Ck~l~------p~le~lA--~~l~~Vd~d~~-----d~~~~~~~la~~~gI  249 (291)
T 3kp9_A          185 PSPLAVGLAAHLRQIG--GTMYGAYWCPHCQDQK------ELFGAAF--DQVPYVECSPN-----GPGTPQAQECTEAGI  249 (291)
T ss_dssp             CCSTHHHHHHHHHHTT--CEEEECTTCHHHHHHH------HHHGGGG--GGSCEEESCSS-----CSSSCCCHHHHTTTC
T ss_pred             CCHHHHHHHHHhCCCC--EEEEECCCCHHHHHHH------HHHHHHH--HHcCEEEEeec-----CchhhHHHHHHHcCC
Confidence            4555666655555555  6888999999999983      2222222  23323333322     12 335678999999


Q ss_pred             CCCceEEEEeCCCCceEEEEeCCCChHHHHH
Q 036413          211 DSLPVVLVIDPITGEKMRKWCGMVDPVSLLE  241 (346)
Q Consensus       211 ~~~P~i~iidp~tge~l~~~~G~~~~~~~i~  241 (346)
                      ..+|++.+    .|+.   ..|..+.+++.+
T Consensus       250 ~~vPT~~i----~G~~---~~G~~~~~~L~~  273 (291)
T 3kp9_A          250 TSYPTWII----NGRT---YTGVRSLEALAV  273 (291)
T ss_dssp             CSTTEEEE----TTEE---EESCCCHHHHHH
T ss_pred             cccCeEEE----CCEE---ecCCCCHHHHHH
Confidence            99999655    4764   789877655443

>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}

Probab=90.34  E-value=0.45  Score=38.93  Aligned_cols=42  Identities=21%  Similarity=0.344  Sum_probs=37.6

Q ss_pred             hHHHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhhcCC
Q 036413            9 QRKRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNNNSN   52 (346)
Q Consensus         9 ~~~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~~~~   52 (346)
                      ...+.|.+.+++  |-+.+.|+..|.+++||++.|++..|.+..
T Consensus        77 ~~e~~v~~L~~M--GF~~~~a~~AL~~~~~~~e~A~e~L~~~~~  118 (126)
T 2lbc_A           77 PPEEIVAIITSM--GFQRNQAIQALRATNNNLERALDWIFSHPE  118 (126)
T ss_dssp             CCHHHHHHHHHH--TSCHHHHHHHHHHHTSCHHHHHHHHHTCCS
T ss_pred             cCHHHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence            356789999999  888999999999999999999999998654

>2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A {Arenicola marina} PDB: 2v32_A 2v41_A

Probab=89.81  E-value=0.38  Score=43.39  Aligned_cols=90  Identities=11%  Similarity=0.001  Sum_probs=56.1

Q ss_pred             cEEEEEec-CCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHH------------------------
Q 036413          147 KWLLVNLQ-SPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSEC------------------------  201 (346)
Q Consensus       147 K~LlV~l~-~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg------------------------  201 (346)
                      ||++|+++ ..+|+.|..--..+  +....+|-+ .++-+++++++      +.+.                        
T Consensus        30 ~~vvL~f~pa~~cpvC~~el~~l--~~l~~ef~~-~~v~vigIS~D------~~~~~~~~~~~i~~~~~~~~~~~fpil~  100 (233)
T 2v2g_A           30 SWGVLFSHPRDFTPVSTTELGRV--IQLEGDFKK-RGVKLIALSCD------NVADHKEWSEDVKCLSGVKGDMPYPIIA  100 (233)
T ss_dssp             SEEEEEECSCSSCHHHHHHHHHH--HHTHHHHHH-TTEEEEEEESS------CHHHHHHHHHHHHHHHTCCSSCSSCEEE
T ss_pred             CeEEEEEECCCCCCCcHHHHHHH--HHHHHHHHH-cCCEEEEEcCC------CHHHHHHHHHHHHHhhCcccCCceEEEE
Confidence            49999998 78999886532111  111222333 67888888777      3321                        


Q ss_pred             ---HHHHhhcCCC------------CCceEEEEeCCCCceEEEEeCC----CChHHHHHHHHHH
Q 036413          202 ---RKVCGYYKLD------------SLPVVLVIDPITGEKMRKWCGM----VDPVSLLEDLLSF  246 (346)
Q Consensus       202 ---~~~~~~y~~~------------~~P~i~iidp~tge~l~~~~G~----~~~~~~i~~L~~f  246 (346)
                         ..++..|++.            ..|.+.|||| .|.....+.|.    -+.++++..|...
T Consensus       101 D~~~~va~~ygv~~~~~~~~~g~~~~~p~~fiID~-~G~I~~~~~~~~~~gr~~~eilr~l~~L  163 (233)
T 2v2g_A          101 DETRELAVKLGMVDPDERTSTGMPLTCRAVFIIGP-DKKLKLSILYPATTGRNFSEILRVIDSL  163 (233)
T ss_dssp             CTTCHHHHHTTCEEEEEECTTCCEEECEEEEEECT-TSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             CChHHHHHHhCCcCcccccCCCcccccceEEEECC-CCEEEEEEecCCCCCCCHHHHHHHHHHH
Confidence               2234445542            4799999997 58887776543    2567777777654

>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}

Probab=89.52  E-value=1.1  Score=40.11  Aligned_cols=87  Identities=13%  Similarity=0.137  Sum_probs=56.6

Q ss_pred             hhcCcEEEEEecCCC--CccccccccccCCCHHHHHHhcc-Cc------EEEEEeecCCCCCCCChHHHHHHhhcCCCCC
Q 036413          143 SDENKWLLVNLQSPK--EFTSHTLNRDTWADEAVSQTIRA-SN------FIFWQVYDDDDDDDDDSECRKVCGYYKLDSL  213 (346)
Q Consensus       143 k~~~K~LlV~l~~~~--~f~c~~lnRdvw~~~~V~~~i~~-~n------FVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~  213 (346)
                      ++-.+.++|.+..+|  |..|..+      .+.+.++-+. ..      ..|..++.+      .  ...++..|++..+
T Consensus        22 ~~~~~pv~v~~~~~~~~c~~c~~~------~~~l~ela~~~~~~~~~~~v~~~~vd~d------~--~~~~~~~~gv~~~   87 (243)
T 2hls_A           22 AEMVNPVEVHVFLSKSGCETCEDT------LRLMKLFEEESPTRNGGKLLKLNVYYRE------S--DSDKFSEFKVERV   87 (243)
T ss_dssp             TTCCSCEEEEEEECSSSCTTHHHH------HHHHHHHHHHSCEETTEESEEEEEEETT------T--THHHHHHTTCCSS
T ss_pred             HhCCCCEEEEEEeCCCCCCchHHH------HHHHHHHHHhccCCCCCceeEEEEecCC------c--CHHHHHhcCCCcC
Confidence            445578888888887  8888777      3334444330 12      445455554      2  3568999999999


Q ss_pred             ceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHH
Q 036413          214 PVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFME  248 (346)
Q Consensus       214 P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~  248 (346)
                      |++.|.+   |  ...+.|..+..++-..+..+++
T Consensus        88 Pt~~i~~---g--~~~~~G~~~~~~l~~fv~~~l~  117 (243)
T 2hls_A           88 PTVAFLG---G--EVRWTGIPAGEEIRALVEVIMR  117 (243)
T ss_dssp             SEEEETT---T--TEEEESCCCTTHHHHHHHHHHH
T ss_pred             CEEEEEC---C--ceeEcCCCcHHHHHHHHHHHHh
Confidence            9999983   5  5556786666666666666554

>1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10

Probab=89.31  E-value=0.71  Score=38.38  Aligned_cols=18  Identities=11%  Similarity=-0.119  Sum_probs=15.1

Q ss_pred             cCcEEEEEec-CCCCcccc
Q 036413          145 ENKWLLVNLQ-SPKEFTSH  162 (346)
Q Consensus       145 ~~K~LlV~l~-~~~~f~c~  162 (346)
                      ++||++|++. +.||..|.
T Consensus        34 ~gk~vvl~f~~~~~c~~C~   52 (162)
T 1tp9_A           34 AGKKVILFGVPGAFTPTCS   52 (162)
T ss_dssp             TTSEEEEEEESCTTCHHHH
T ss_pred             CCCcEEEEEeCCCCCCCCC
Confidence            5788999887 78898887

>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}

Probab=89.20  E-value=1.8  Score=36.02  Aligned_cols=40  Identities=13%  Similarity=0.138  Sum_probs=30.5

Q ss_pred             HHHHhhcCCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHH
Q 036413          202 RKVCGYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFME  248 (346)
Q Consensus       202 ~~~~~~y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~  248 (346)
                      .+++..+++...|++.|    .|+   .+.|..+.+.|.+.|.+.+.
T Consensus       134 ~~~a~~~gv~gtPt~~i----~g~---~~~G~~~~~~l~~~i~~~l~  173 (175)
T 3gyk_A          134 MALAQKLGFNGTPSFVV----EDA---LVPGFVEQSQLQDAVDRARK  173 (175)
T ss_dssp             HHHHHHHTCCSSSEEEE----TTE---EECSCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCccCCEEEE----CCE---EeeCCCCHHHHHHHHHHHHh
Confidence            34567788999999876    353   45798899888888887764

>4eo3_A Bacterioferritin comigratory protein/NADH dehydro; thioredoxin-fold, alpha-beta-aplha sandwich fold, antioxidan oxidoreductase, FMN binding; HET: FMN; 1.65A {Thermotoga maritima}

Probab=89.18  E-value=1.4  Score=41.67  Aligned_cols=89  Identities=13%  Similarity=0.159  Sum_probs=56.1

Q ss_pred             hcCcEEEEEecC-CCCccccccccccCCCHHHHHHhc--cCcEEEEEeecCCCCCCCChHH-------------------
Q 036413          144 DENKWLLVNLQS-PKEFTSHTLNRDTWADEAVSQTIR--ASNFIFWQVYDDDDDDDDDSEC-------------------  201 (346)
Q Consensus       144 ~~~K~LlV~l~~-~~~f~c~~lnRdvw~~~~V~~~i~--~~nFVfw~~~~~~~~~~~~~eg-------------------  201 (346)
                      =.+||+++|+.- .+++.|.         .++.+|-+  .+++.+++++.+      +.+.                   
T Consensus        22 ~~Gk~vvl~F~p~~~tp~C~---------~e~~~~~~~~~~~~~v~gis~D------~~~~~~~f~~~~~l~fp~l~D~~   86 (322)
T 4eo3_A           22 LYGKYTILFFFPKAGTSGST---------REAVEFSRENFEKAQVVGISRD------SVEALKRFKEKNDLKVTLLSDPE   86 (322)
T ss_dssp             TTTSEEEEEECSSTTSHHHH---------HHHHHHHHSCCTTEEEEEEESC------CHHHHHHHHHHHTCCSEEEECTT
T ss_pred             hCCCeEEEEEECCCCCCCCH---------HHHHHHHHHhhCCCEEEEEeCC------CHHHHHHHHHhhCCceEEEEcCc
Confidence            357899999872 3445453         22333322  246777777776      4432                   


Q ss_pred             HHHHhhcCC----CCCceEEEEeCCCCceEEEEeCCC---ChHHHHHHHHHHHH
Q 036413          202 RKVCGYYKL----DSLPVVLVIDPITGEKMRKWCGMV---DPVSLLEDLLSFME  248 (346)
Q Consensus       202 ~~~~~~y~~----~~~P~i~iidp~tge~l~~~~G~~---~~~~~i~~L~~fl~  248 (346)
                      ..+++.|++    ..+|...|||+ .|.....|.+..   .++++++.|....+
T Consensus        87 ~~v~~~ygv~~~~~~~r~tfiId~-~G~i~~~~~~v~~~~h~~~~l~~~~~~~~  139 (322)
T 4eo3_A           87 GILHEFFNVLENGKTVRSTFLIDR-WGFVRKEWRRVKVEGHVQEVKEALDRLIE  139 (322)
T ss_dssp             CHHHHHTTCEETTEECCEEEEECT-TSBEEEEEESCCSTTHHHHHHHHHHHHHH
T ss_pred             hHHHHhcCCCCCCcCccEEEEECC-CCEEEEEEeCCCccccHHHHHHHHhhhch
Confidence            234455665    35789999997 699888898732   25778888777653

>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10

Probab=88.97  E-value=1.1  Score=39.57  Aligned_cols=89  Identities=13%  Similarity=0.028  Sum_probs=52.5

Q ss_pred             cCcEEEEEec-CCCCcccc-ccccccCCCHHHHHHhccCcE-EEEEeecCCCCCCCChH-HH------------------
Q 036413          145 ENKWLLVNLQ-SPKEFTSH-TLNRDTWADEAVSQTIRASNF-IFWQVYDDDDDDDDDSE-CR------------------  202 (346)
Q Consensus       145 ~~K~LlV~l~-~~~~f~c~-~lnRdvw~~~~V~~~i~~~nF-Vfw~~~~~~~~~~~~~e-g~------------------  202 (346)
                      .+||++|++. ..||+.|. .--..+  ++...+|-+ .++ .+++++.+      +++ ..                  
T Consensus        32 ~gk~vvl~f~~a~~cp~C~~~e~~~l--~~~~~~~~~-~~~~~vv~is~d------~~~~~~~~~~~~~~~~~~~l~D~~  102 (241)
T 1nm3_A           32 DNKTVIVFSLPGAFTPTCSSSHLPRY--NELAPVFKK-YGVDDILVVSVN------DTFVMNAWKEDEKSENISFIPDGN  102 (241)
T ss_dssp             TTSEEEEEEESCSSCHHHHHTHHHHH--HHHHHHHHH-TTCCEEEEEESS------CHHHHHHHHHHTTCTTSEEEECTT
T ss_pred             CCCeEEEEEeCCCCCCCCCHHHHHHH--HHHHHHHHH-CCCCEEEEEEcC------CHHHHHHHHHhcCCCceEEEECCC
Confidence            5789999997 89999997 221111  111122223 567 67777766      332 22                  


Q ss_pred             -HHHhhcCCC-----------CCceEEEEeCCCCceEEEEeCC---------CChHHHHHHHH
Q 036413          203 -KVCGYYKLD-----------SLPVVLVIDPITGEKMRKWCGM---------VDPVSLLEDLL  244 (346)
Q Consensus       203 -~~~~~y~~~-----------~~P~i~iidp~tge~l~~~~G~---------~~~~~~i~~L~  244 (346)
                       .++..|++.           ..|+..|| + .|.....+.|.         .+++++++.|.
T Consensus       103 ~~~~~~~gv~~~~~~~g~~~~~~p~t~li-~-~G~i~~~~~~~~~~~~~~~~~~~~~il~~l~  163 (241)
T 1nm3_A          103 GEFTEGMGMLVGKEDLGFGKRSWRYSMLV-K-NGVVEKMFIEPNEPGDPFKVSDADTMLKYLA  163 (241)
T ss_dssp             SHHHHHTTCEEECTTTTCCEEECCEEEEE-E-TTEEEEEEECCSCSSCCCSSSSHHHHHHHHC
T ss_pred             cHHHHHhCceeecccccCcccceeEEEEE-E-CCEEEEEEEeccCCCccceecCHHHHHHHhh
Confidence             234445542           34888888 5 69888887763         24555555554

>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=87.90  E-value=0.8  Score=33.21  Aligned_cols=42  Identities=26%  Similarity=0.416  Sum_probs=36.1

Q ss_pred             HHHHHHhhhcccCCCCHHHHHHHHHHcCC-CHHHHHHHHhhcCCC
Q 036413           10 RKRVISSFLEITNGQTEETALKILNATNW-NLDKAILRFNNNSNN   53 (346)
Q Consensus        10 ~~~~i~~F~~iTt~~~~~~A~~~L~~~~w-dle~Av~~f~~~~~~   53 (346)
                      ..+.|.+.+++  |=+.+.|++.|.++++ |+|.|++-.|++...
T Consensus         9 ~e~~v~~L~~M--GF~~~~a~~AL~~t~n~~~e~A~~wL~~h~~d   51 (64)
T 2crn_A            9 SPSLLEPLLAM--GFPVHTALKALAATGRKTAEEALAWLHDHCND   51 (64)
T ss_dssp             SCSSHHHHHHT--SCCHHHHHHHHHHHTSCCHHHHHHHHHHHSSS
T ss_pred             CHHHHHHHHHc--CCCHHHHHHHHHHhCCCCHHHHHHHHHhCCCC
Confidence            34578899998  8999999999999976 999999999987643

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=87.40  E-value=4.8  Score=40.09  Aligned_cols=81  Identities=9%  Similarity=0.113  Sum_probs=57.4

Q ss_pred             hcCcEEEEEecCCCCccccccccccCCCHHHHHH--hccCcEEEEEeecCCCCCCCChHHHHHHhhcCCCCCceEEEEeC
Q 036413          144 DENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQT--IRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVLVIDP  221 (346)
Q Consensus       144 ~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~--i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~i~iidp  221 (346)
                      ..++..++.+.++||..|+.+..      .+.++  .+ .+..+..++.+        +...++..|++.+.|++.|   
T Consensus       115 ~~~~~~i~~f~a~~C~~C~~~~~------~l~~~a~~~-~~v~~~~vd~~--------~~~~~~~~~~i~svPt~~i---  176 (521)
T 1hyu_A          115 IDGDFEFETYYSLSCHNCPDVVQ------ALNLMAVLN-PRIKHTAIDGG--------TFQNEITERNVMGVPAVFV---  176 (521)
T ss_dssp             CCSCEEEEEEECTTCSSHHHHHH------HHHHHHHHC-TTEEEEEEETT--------TCHHHHHHTTCCSSSEEEE---
T ss_pred             cCCCcceEEEECCCCcCcHHHHH------HHHHHHhHc-CceEEEEEech--------hhHHHHHHhCCCccCEEEE---
Confidence            34667788888999999998742      23222  23 46777777766        3356899999999999976   


Q ss_pred             CCCceEEEEeCCCChHHHHHHHHH
Q 036413          222 ITGEKMRKWCGMVDPVSLLEDLLS  245 (346)
Q Consensus       222 ~tge~l~~~~G~~~~~~~i~~L~~  245 (346)
                       .|+.+.  .|..+.+++++.|..
T Consensus       177 -~g~~~~--~G~~~~~~l~~~l~~  197 (521)
T 1hyu_A          177 -NGKEFG--QGRMTLTEIVAKVDT  197 (521)
T ss_dssp             -TTEEEE--ESCCCHHHHHHHHCC
T ss_pred             -CCEEEe--cCCCCHHHHHHHHhh
Confidence             577664  488887777766543

>3keb_A Probable thiol peroxidase; structural genomics, APC40679, PSI-2, Pro structure initiative; HET: MSE; 1.80A {Chromobacterium violaceum}

Probab=87.38  E-value=5  Score=35.98  Aligned_cols=48  Identities=13%  Similarity=0.007  Sum_probs=34.4

Q ss_pred             HHHHhhcCCCC---------CceEEEEeCCCCceEEEEeC-----CCChHHHHHHHHHHHHcC
Q 036413          202 RKVCGYYKLDS---------LPVVLVIDPITGEKMRKWCG-----MVDPVSLLEDLLSFMESG  250 (346)
Q Consensus       202 ~~~~~~y~~~~---------~P~i~iidp~tge~l~~~~G-----~~~~~~~i~~L~~fl~~~  250 (346)
                      ..++..|++..         .|.+.|||+ .|.....+.+     ..+.+++++.|.......
T Consensus       117 ~~vak~yGv~~~~~~~~G~~~p~tfvID~-dG~I~~~~~~~~~~~~pd~~evl~~L~~l~~~~  178 (224)
T 3keb_A          117 RDFHKRYGVLITEYPLSGYTSPAIILADA-ANVVHYSERLANTRDFFDFDAIEKLLQEGEQQA  178 (224)
T ss_dssp             TTHHHHTTCBCCSTTSTTCBCCEEEEECT-TCBEEEEEECSBTTCCCCHHHHHHHHHHHHHHC
T ss_pred             hHHHHHhCCccccccccCCccCEEEEEcC-CCEEEEEEecCCCCCCCCHHHHHHHHHHhhhcc
Confidence            35666677632         699999997 5888776542     356888998888776554

>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*

Probab=87.05  E-value=1  Score=36.71  Aligned_cols=40  Identities=20%  Similarity=0.221  Sum_probs=35.9

Q ss_pred             HHHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhhcC
Q 036413           10 RKRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNNNS   51 (346)
Q Consensus        10 ~~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~~~   51 (346)
                      ..++|.+|+++  |=+.+.|+.-|..+++|++.|+...|...
T Consensus        76 ~~~~v~~L~eM--GF~~~~a~~AL~~~~nd~erAlewL~~~~  115 (118)
T 4ae4_A           76 FLQLMSKFKEM--GFELKDIKEVLLLHNNDQDNALEDLMARA  115 (118)
T ss_dssp             HHHHHHHHHHT--TCCHHHHHHHHHHTTTCHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHHHhc
Confidence            34679999999  89999999999999999999999888643

>3bj5_A Protein disulfide-isomerase; thioredoxin fold, chaperone, endoplasmic reticulum, isomeras membrane, redox-active center; 2.20A {Homo sapiens}

Probab=86.78  E-value=3.5  Score=34.14  Aligned_cols=63  Identities=16%  Similarity=0.247  Sum_probs=42.3

Q ss_pred             CcEEEEEeecCCCCCCCChHHHHHHhhcCCC--CCceEEEEeC-CCCceEEEEeCCCChHHHHHHHHHHHHc
Q 036413          181 SNFIFWQVYDDDDDDDDDSECRKVCGYYKLD--SLPVVLVIDP-ITGEKMRKWCGMVDPVSLLEDLLSFMES  249 (346)
Q Consensus       181 ~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~--~~P~i~iidp-~tge~l~~~~G~~~~~~~i~~L~~fl~~  249 (346)
                      ..++|..++.+      ..+..+++..+++.  .+|.|+|++. ..+.+...-.|.++++.+.+-+..|++.
T Consensus        63 gki~Fv~vd~~------~~~~~~~l~~fGl~~~~~P~v~i~~~~~~~~Ky~~~~~~~t~~~i~~Fv~d~l~G  128 (147)
T 3bj5_A           63 GKILFAFIDSD------HTDNQRILEFFGLKKEECPAVRLITLEEEMTKYKPESEELTAERITEFCHRFLEG  128 (147)
T ss_dssp             TTCEEEEECTT------CGGGHHHHHHTTCCGGGCSEEEEEECSSSCEEECCSCCCCCHHHHHHHHHHHHTT
T ss_pred             CceEEEEEecc------hHhHHHHHHHcCCCcccCCEEEEEecccccccCCCCcccCCHHHHHHHHHHHHcC
Confidence            56777777665      34555688889997  4999999995 3444433223677887666666666654

>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}

Probab=86.18  E-value=0.95  Score=36.00  Aligned_cols=77  Identities=13%  Similarity=0.130  Sum_probs=50.0

Q ss_pred             EEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCCCCceEEEEeCCCCceE
Q 036413          148 WLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVLVIDPITGEKM  227 (346)
Q Consensus       148 ~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~i~iidp~tge~l  227 (346)
                      ..+|.+..+||..|..+.      +.+.++..+.++-|-.+++++     ++   .++..|++. .|.|.++.  .|+.+
T Consensus        30 ~~vv~y~~~~C~~C~~a~------~~L~~l~~e~~i~~~~vDId~-----d~---~l~~~ygv~-VP~l~~~~--dG~~v   92 (107)
T 2fgx_A           30 RKLVVYGREGCHLCEEMI------ASLRVLQKKSWFELEVINIDG-----NE---HLTRLYNDR-VPVLFAVN--EDKEL   92 (107)
T ss_dssp             CCEEEEECSSCHHHHHHH------HHHHHHHHHSCCCCEEEETTT-----CH---HHHHHSTTS-CSEEEETT--TTEEE
T ss_pred             cEEEEEeCCCChhHHHHH------HHHHHHHHhcCCeEEEEECCC-----CH---HHHHHhCCC-CceEEEEE--CCEEE
Confidence            347778889999998773      333333331246666777772     33   366778886 99987654  47765


Q ss_pred             EEEeCCCChHHHHHHH
Q 036413          228 RKWCGMVDPVSLLEDL  243 (346)
Q Consensus       228 ~~~~G~~~~~~~i~~L  243 (346)
                        ..|..+++++.+.|
T Consensus        93 --~~g~~~~~~L~~~L  106 (107)
T 2fgx_A           93 --CHYFLDSDVIGAYL  106 (107)
T ss_dssp             --ECSSCCCHHHHHHH
T ss_pred             --EecCCCHHHHHHHh
Confidence              35777877665544

>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}

Probab=84.66  E-value=0.32  Score=36.71  Aligned_cols=51  Identities=18%  Similarity=0.215  Sum_probs=33.7

Q ss_pred             eEEEEEcCCCc-cc-------------------c-CCcceEEecCCCCCCCCccCCcccchhhcCCCceeEEE
Q 036413          292 CRIGVRLPDGQ-EA-------------------N-QTRQFRLTRPDPGAPKPLDYNSKMTFQESGLNNSVILV  343 (346)
Q Consensus       292 trIqiRlpdG~-ri-------------------~-~~~~f~l~~~~P~~~~~l~~~~d~TieeagL~n~~vl~  343 (346)
                      -.|+||.|+|. ||                   . ....|.+...+|+. ..+....+.|+++.||+++.+++
T Consensus         5 m~lRvrs~~G~~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~-~~l~~~~~~~l~~lgl~hGd~l~   76 (80)
T 2pjh_A            5 IIIRVQSPDGVKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKT-GEITASSSKSLHLLKIKHGDLLF   76 (80)
T ss_dssp             CCCEEECSSEEEECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCGG-GGSSSCCCCTTTTTCCCTTCCEE
T ss_pred             EEEEEECCCCCEEEEcCCcChHHHHHHHHHHHcCCCCCcceEEecCCCC-CcccCCCCCCHHHcCCCCCCEEE
Confidence            46899999995 45                   1 12356666666641 33434478899999998766554

>1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1

Probab=84.56  E-value=3  Score=36.39  Aligned_cols=88  Identities=14%  Similarity=0.173  Sum_probs=56.8

Q ss_pred             hcCcEEEEEecCCCCccccccccccCCCHHHHHHhccC--cEEEEEeecCCCCC--------------------------
Q 036413          144 DENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRAS--NFIFWQVYDDDDDD--------------------------  195 (346)
Q Consensus       144 ~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~--nFVfw~~~~~~~~~--------------------------  195 (346)
                      ...|..+|.+.+++|..|+.|...      +.++.+ .  .+++..+.....+.                          
T Consensus        84 ~~~k~~vv~F~d~~Cp~C~~~~~~------l~~~~~-~~v~v~~~~~p~~~~~~~s~~~a~~~~~a~d~~~a~~~~~~~~  156 (211)
T 1t3b_A           84 KNEKHVVTVFMDITCHYCHLLHQQ------LKEYND-LGITVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNEAEKGN  156 (211)
T ss_dssp             TTCSEEEEEEECTTCHHHHHHHTT------HHHHHH-TTEEEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHHHHTTC
T ss_pred             CCCCEEEEEEECCCCHhHHHHHHH------HHHHHh-CCcEEEEEECCccCCCchHHHHHHHHHhCcCHHHHHHHHHcCC
Confidence            467999999999999999999643      555544 3  33333333210000                          


Q ss_pred             --------CCChHHHHHHhhcCCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHH
Q 036413          196 --------DDDSECRKVCGYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLL  244 (346)
Q Consensus       196 --------~~~~eg~~~~~~y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~  244 (346)
                              ..-.+..+++..|++...|++.|.   .|+   ++.|..++++|.+.|.
T Consensus       157 ~~~~~~~~~~v~~~~~l~~~~gV~gTPt~vi~---nG~---~~~G~~~~~~l~~~l~  207 (211)
T 1t3b_A          157 LPKEVKTPNIVKKHYELGIQFGVRGTPSIVTS---TGE---LIGGYLKPADLLRALE  207 (211)
T ss_dssp             CCSSCCCSSHHHHHHHHHHHHTCCSSCEEECT---TSC---CCCSCCCHHHHHHHHH
T ss_pred             CCChHHHHHHHHHHHHHHHHcCCCcCCEEEEe---CCE---EecCCCCHHHHHHHHH
Confidence                    001134566788999999999883   465   4579888877766554

>2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea}

Probab=84.54  E-value=0.99  Score=32.76  Aligned_cols=62  Identities=15%  Similarity=0.123  Sum_probs=38.6

Q ss_pred             EEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCCCCceEEEEeCCCCceE
Q 036413          151 VNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVLVIDPITGEKM  227 (346)
Q Consensus       151 V~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~i~iidp~tge~l  227 (346)
                      +.+..+||..|+.+.      +.+.+++++.+.-+--++++.     +.+...++..|++.+.|++.|    .|+.+
T Consensus         5 ~~f~~~~C~~C~~~~------~~l~~~~~~~~~~~~~~~v~~-----~~~~~~~~~~~gv~~vPt~~i----~g~~~   66 (80)
T 2k8s_A            5 AIFYHAGCPVCVSAE------QAVANAIDPSKYTVEIVHLGT-----DKARIAEAEKAGVKSVPALVI----DGAAF   66 (80)
T ss_dssp             EEEEECSCHHHHHHH------HHHHHHSCTTTEEEEEEETTT-----CSSTHHHHHHHTCCEEEEEEE----TTEEE
T ss_pred             EEEeCCCCCchHHHH------HHHHHHHHhcCCeEEEEEecC-----ChhhHHHHHHcCCCcCCEEEE----CCEEE
Confidence            444678999999884      445667762222233334441     123456778899999999876    46654

>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}

Probab=84.45  E-value=1.7  Score=30.55  Aligned_cols=41  Identities=17%  Similarity=0.109  Sum_probs=36.4

Q ss_pred             hhHHHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhhc
Q 036413            8 KQRKRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNNN   50 (346)
Q Consensus         8 ~~~~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~~   50 (346)
                      +.-++.|++.|++  |-|.+.|++-|..++.|++.|-+.-.+-
T Consensus         5 ~p~e~~Ia~L~sm--Gfsr~da~~AL~ia~Ndv~~AtNiLlEf   45 (56)
T 2juj_A            5 PQLSSEIENLMSQ--GYSYQDIQKALVIAQNNIEMAKNILREF   45 (56)
T ss_dssp             HHHHHHHHHHHTT--TCCHHHHHHHHHHTTTCSHHHHHHHHHS
T ss_pred             CCChHHHHHHHHc--CCCHHHHHHHHHHhcccHHHHHHHHHHH
Confidence            4456789999999  9999999999999999999999877663

>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=83.84  E-value=1.4  Score=32.37  Aligned_cols=43  Identities=12%  Similarity=0.091  Sum_probs=37.8

Q ss_pred             hhHHHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhhc
Q 036413            8 KQRKRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNNN   50 (346)
Q Consensus         8 ~~~~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~~   50 (346)
                      .+..+.+.++.++=-.-|.++-+..|++|+||++.||+..++.
T Consensus        16 ~~~~~~v~~L~~MFP~lD~~vI~~vL~a~~G~vd~aId~LL~m   58 (67)
T 2dhy_A           16 LEFNQAMDDFKTMFPNMDYDIIECVLRANSGAVDATIDQLLQM   58 (67)
T ss_dssp             CCSHHHHHHHHHHCSSSCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence            3567788888888788899999999999999999999988874

>1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics, structural genomics consortium, SGC; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 PDB: 3tb2_A

Probab=83.51  E-value=2.7  Score=37.08  Aligned_cols=34  Identities=15%  Similarity=0.097  Sum_probs=24.7

Q ss_pred             CCceEEEEeCCCCceEEEEeCC----CChHHHHHHHHHH
Q 036413          212 SLPVVLVIDPITGEKMRKWCGM----VDPVSLLEDLLSF  246 (346)
Q Consensus       212 ~~P~i~iidp~tge~l~~~~G~----~~~~~~i~~L~~f  246 (346)
                      ..|.+.|||| .|.....+.|.    .+.++++..|...
T Consensus       127 ~~p~~flID~-~G~I~~~~~~~~~~g~~~~ell~~i~~l  164 (220)
T 1xcc_A          127 TCRCLFFISP-EKKIKATVLYPATTGRNAHEILRVLKSL  164 (220)
T ss_dssp             ECEEEEEECT-TSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             ccceEEEECC-CCEEEEEEecCCCCCCCHHHHHHHHHHH
Confidence            3699999997 58887776542    3567777777654

>3uma_A Hypothetical peroxiredoxin protein; nysgrc, PSI biology, structural genomics, NEW YORK structura genomics research consortium; 2.20A {Sinorhizobium meliloti}

Probab=82.30  E-value=2.5  Score=36.38  Aligned_cols=76  Identities=11%  Similarity=-0.012  Sum_probs=42.4

Q ss_pred             cCcEEEEE-ecCCCCccccc--cccccCCCHHHHHHhccCcEE-EEEeecCCCCCCCChH-HH-----------------
Q 036413          145 ENKWLLVN-LQSPKEFTSHT--LNRDTWADEAVSQTIRASNFI-FWQVYDDDDDDDDDSE-CR-----------------  202 (346)
Q Consensus       145 ~~K~LlV~-l~~~~~f~c~~--lnRdvw~~~~V~~~i~~~nFV-fw~~~~~~~~~~~~~e-g~-----------------  202 (346)
                      .+||++|+ +-..||+.|..  +. .+  ++...+|-. .++. ++.++.+      +++ ..                 
T Consensus        55 ~Gk~vvL~f~~a~wcp~C~~~e~p-~l--~~~~~~~~~-~gv~~vv~Is~d------~~~~~~~f~~~~~~~~~fp~l~D  124 (184)
T 3uma_A           55 KGKRVVLFAVPGAFTPTCSLNHLP-GY--LENRDAILA-RGVDDIAVVAVN------DLHVMGAWATHSGGMGKIHFLSD  124 (184)
T ss_dssp             TTSEEEEEEESCTTCHHHHHTHHH-HH--HHTHHHHHT-TTCCEEEEEESS------CHHHHHHHHHHHTCTTTSEEEEC
T ss_pred             CCCCEEEEEEcCCCCCCcCHHHHH-HH--HHHHHHHHH-cCCCEEEEEECC------CHHHHHHHHHHhCCCCceEEEEc
Confidence            35665544 45889999976  21 10  111122223 5666 7777666      432 22                 


Q ss_pred             ---HHHhhcCCC-----------CCceEEEEeCCCCceEEEEeC
Q 036413          203 ---KVCGYYKLD-----------SLPVVLVIDPITGEKMRKWCG  232 (346)
Q Consensus       203 ---~~~~~y~~~-----------~~P~i~iidp~tge~l~~~~G  232 (346)
                         .++..|++.           ..|+..||+  .|.....+.|
T Consensus       125 ~~~~va~~yGv~~~~~~~g~g~~~~r~tfiId--dG~I~~~~~~  166 (184)
T 3uma_A          125 WNAAFTKAIGMEIDLSAGTLGIRSKRYSMLVE--DGVVKALNIE  166 (184)
T ss_dssp             TTCHHHHHTTCEEEEGGGTCEEEECCEEEEEE--TTEEEEEEEC
T ss_pred             CchHHHHHcCCceeccccCCcccceeEEEEEC--CCEEEEEEEe
Confidence               244445542           357788885  6888888765

>3sbc_A Peroxiredoxin TSA1; alpha-beta fold, peroxidase, cytosol, oxidoreductase; 2.80A {Saccharomyces cerevisiae}

Probab=81.90  E-value=2.7  Score=37.62  Aligned_cols=91  Identities=15%  Similarity=0.082  Sum_probs=60.0

Q ss_pred             cCcEEEEEec-CCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHH----------------------
Q 036413          145 ENKWLLVNLQ-SPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSEC----------------------  201 (346)
Q Consensus       145 ~~K~LlV~l~-~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg----------------------  201 (346)
                      .+||++++++ ..+++.|..=-..+  ++...+|-+ .+..+++++.+      +...                      
T Consensus        51 ~GK~vVL~FyP~d~TpvCt~E~~~f--~~~~~~f~~-~g~~vigiS~D------s~~sh~aw~~~~~~~~~~~~l~fpll  121 (216)
T 3sbc_A           51 KGKYVVLAFIPLAFTFVSPTEIIAF--SEAAKKFEE-QGAQVLFASTD------SEYSLLAWTNIPRKEGGLGPINIPLL  121 (216)
T ss_dssp             TTSEEEEEECSCTTSSHHHHHHHHH--HHHHHHHHH-TTEEEEEEESS------CHHHHHHHHTSCGGGTCCCSCSSCEE
T ss_pred             CCCeEEEEEEcCCCCCcCchhhhHH--HHhHHhhcc-CCceEEEeecC------chhhHHHHHHHHHHhCCccCcccceE
Confidence            5799999998 67888885432221  233444555 79999999988      4332                      


Q ss_pred             ----HHHHhhcCC------CCCceEEEEeCCCCceEEEEe-C---CCChHHHHHHHHH
Q 036413          202 ----RKVCGYYKL------DSLPVVLVIDPITGEKMRKWC-G---MVDPVSLLEDLLS  245 (346)
Q Consensus       202 ----~~~~~~y~~------~~~P~i~iidp~tge~l~~~~-G---~~~~~~~i~~L~~  245 (346)
                          ..++..|++      -.++.+.|||| .|..-..+. .   --+.+++|..|..
T Consensus       122 sD~~~~vak~YGv~~~~~g~~~R~tFiID~-~G~Ir~~~v~~~~~grn~dEiLr~l~A  178 (216)
T 3sbc_A          122 ADTNHSLSRDYGVLIEEEGVALRGLFIIDP-KGVIRHITINDLPVGRNVDEALRLVEA  178 (216)
T ss_dssp             ECTTSHHHHHHTCEETTTTEECEEEEEECT-TSBEEEEEEECTTBCCCHHHHHHHHHH
T ss_pred             eCCCCHHHHHcCCeeccCCceeeEEEEECC-CCeEEEEEEcCCCCCCCHHHHHHHHHH
Confidence                345666766      14789999998 577554442 1   1367888877765

>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}

Probab=80.83  E-value=3.1  Score=28.09  Aligned_cols=38  Identities=16%  Similarity=0.126  Sum_probs=33.5

Q ss_pred             HHHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhh
Q 036413           10 RKRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNN   49 (346)
Q Consensus        10 ~~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~   49 (346)
                      -++.|...|+.  |-|.+.|++-|..++.|+|.|-+.-.+
T Consensus         4 ~e~~I~~L~s~--Gf~~~~~~rAL~ia~Nnie~A~nIL~e   41 (46)
T 2oo9_A            4 LSSEIENLMSQ--GYSYQDIQKALVIAQNNIEMAKNILRE   41 (46)
T ss_dssp             HHHHHHHHHHT--TBCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHc--CCCHHHHHHHHHHhhccHHHHHHHHHH
Confidence            35678999998  999999999999999999999886554

>3mng_A Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, substrate analog, DTT, oxidoreductase; 1.45A {Homo sapiens} SCOP: c.47.1.10 PDB: 2vl3_A 1oc3_A 2vl2_A 2vl9_A 1urm_A 1hd2_A 1h4o_A

Probab=80.08  E-value=4.4  Score=34.38  Aligned_cols=19  Identities=11%  Similarity=-0.034  Sum_probs=14.8

Q ss_pred             CCceEEEEeCCCCceEEEEeC
Q 036413          212 SLPVVLVIDPITGEKMRKWCG  232 (346)
Q Consensus       212 ~~P~i~iidp~tge~l~~~~G  232 (346)
                      ..|...|||  .|.....+.+
T Consensus       137 ~~r~tfvID--dG~I~~~~v~  155 (173)
T 3mng_A          137 LKRFSMVVQ--DGIVKALNVE  155 (173)
T ss_dssp             BCCEEEEEE--TTEEEEEEEC
T ss_pred             eEEEEEEEE--CCEEEEEEEe
Confidence            359999999  6888877755

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	346
d2dlxa1	147	c.47.1.24 (A:1-147) UBX domain-containing protein	1e-27
d1v92a_	46	a.5.2.3 (A:) NSFL1 (p97 ATPase) cofactor p47, UBA-	1e-05
d2cr5a1	96	d.15.1.2 (A:8-103) UBX domain-containing protein 6	0.002

>d2dlxa1 c.47.1.24 (A:1-147) UBX domain-containing protein 7 {Human (Homo sapiens) [TaxId: 9606]} Length = 147

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: UAS domain
domain: UBX domain-containing protein 7
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  103 bits (258), Expect = 1e-27
 Identities = 63/155 (40%), Positives = 90/155 (58%), Gaps = 9/155 (5%)

Query: 105 GSEEPSDNKNNNNNLASLYRPPVDLMFNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTL 164
           GS   S        LA L+RPP+DLM  GSFE AK+ G  +NKWL++N+Q+ ++F    L
Sbjct: 1   GSSGSSGIDKKLTTLADLFRPPIDLMHKGSFETAKECGQMQNKWLMINIQNVQDFACQCL 60

Query: 165 NRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVLVIDPITG 224
           NRD W++EAV   I   +FIFWQVY D +      E ++   +YKL   P V ++DP TG
Sbjct: 61  NRDVWSNEAVKN-IIREHFIFWQVYHDSE------EGQRYIQFYKLGDFPYVSILDPRTG 113

Query: 225 EKMRKWCGMVDPVSLLEDLLSFM-ESGPRDQLERA 258
           +K+ +W   +D  S L+ +  F+ E G  D L  +
Sbjct: 114 QKLVEW-HQLDVSSFLDQVTGFLGEHGQLDGLSSS 147

>d1v92a_ a.5.2.3 (A:) NSFL1 (p97 ATPase) cofactor p47, UBA-like domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 46

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: TAP-C domain-like
domain: NSFL1 (p97 ATPase) cofactor p47, UBA-like domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.6 bits (93), Expect = 1e-05
 Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 6/50 (12%)

Query: 1  MASRKQKKQRKRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNNN 50
          MA  +Q       +  F+ +T G  E+ A   L +  W+L  A+  F  +
Sbjct: 1  MAEERQDA-----LREFVAVT-GAEEDRARFFLESAGWDLQIALASFYED 44

>d2cr5a1 d.15.1.2 (A:8-103) UBX domain-containing protein 6 (Reproduction 8) {Mouse (Mus musculus) [TaxId: 10090]} Length = 96

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: UBX domain-containing protein 6 (Reproduction 8)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.9 bits (80), Expect = 0.002
 Identities = 16/91 (17%), Positives = 31/91 (34%), Gaps = 24/91 (26%)

Query: 277 PAVPEEPLQVARNLVCRIGVRLPDGQEANQTRQFRLTRP--------------------- 315
           P +PEEP + A   V  + +R P+G+     R+F  +                       
Sbjct: 3   PDLPEEPSETAEE-VVTVALRCPNGR--VLRRRFFKSWNSQVLLDWMMKVGYHKSLYRLS 59

Query: 316 DPGAPKPLDYNSKMTFQESGLNNSVILVTLE 346
                + L+     + ++ G+    +L   E
Sbjct: 60  TSFPRRALEVEGGSSLEDIGITVDTVLNVEE 90

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	346
d2dlxa1	147	UBX domain-containing protein 7 {Human (Homo sapie	100.0
d1v92a_	46	NSFL1 (p97 ATPase) cofactor p47, UBA-like domain {	99.52
d2cr5a1	96	UBX domain-containing protein 6 (Reproduction 8) {	99.33
d1i42a_	89	p47 {Rat (Rattus norvegicus) [TaxId: 10116]}	99.31
d1sena_	135	Thioredoxin-like protein p19, TLP19 {Human (Homo s	99.17
d2fwha1	117	Thiol:disulfide interchange protein DsbD, C-termin	99.17
d1wj4a_	124	Hypothetical protein KIAA0794 {Human (Homo sapiens	98.86
d1h8ca_	82	Fas-associated factor 1, Faf1 {Human (Homo sapiens	98.83
d1xfla_	114	Thioredoxin {Thale cress (Arabidopsis thaliana) [T	98.79
d1ep7a_	112	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	98.69
d1dbya_	107	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	98.62
d1thxa_	108	Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}	98.61
d1ti3a_	113	Thioredoxin {European aspen (Populus tremula), thi	98.55
d1fb6a_	104	Thioredoxin {Spinach (Spinacia oleracea), thioredo	98.5
d2trxa_	108	Thioredoxin {Escherichia coli [TaxId: 562]}	98.49
d1gh2a_	107	Thioredoxin-like protein, N-terminal domain {Human	98.49
d2ifqa1	105	Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}	98.43
d1nw2a_	105	Thioredoxin {Alicyclobacillus acidocaldarius, form	98.43
d1f9ma_	112	Thioredoxin {Spinach (Spinacia oleracea), thioredo	98.37
d1xwaa_	111	Thioredoxin {Fruit fly (Drosophila melanogaster) [	98.24
d1a8la2	107	Protein disulfide isomerase, PDI {Archaeon Pyrococ	98.23
d1r26a_	113	Thioredoxin {Trypanosoma brucei [TaxId: 5691]}	98.23
d2hfda1	132	Hydrogenase-1 operon protein HyaE {Escherichia col	98.05
d1syra_	103	Thioredoxin {Malarial parasite (Plasmodium falcipa	98.04
d2es7a1	119	Hydrogenase-1 operon protein HyaE {Salmonella typh	98.02
d1z5ye1	136	Thioredoxin-like protein CcmG (CycY, DsbE) {Escher	98.02
d1knga_	144	Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyr	98.02
d1zmaa1	115	Bacterocin transport accessory protein Bta {Strept	97.93
d1meka_	120	Protein disulfide isomerase, PDI {Human (Homo sapi	97.83
d1fo5a_	85	MJ0307, thioredoxin/glutaredoxin-like protein {Arc	97.83
d2b5ea4	119	Protein disulfide isomerase, PDI {Baker's yeast (S	97.78
d1qgva_	137	spliceosomal protein U5-15Kd {Human (Homo sapiens)	97.74
d1woua_	119	Putative 42-9-9 protein (thioredoxin containing pr	97.58
d1st9a_	137	Thiol-disulfide oxidoreductase ResA {Bacillus subt	97.57
d2g3qa1	43	Endocytic protein Ede1, YBL047C {Saccharomyces cer	97.56
d1jfua_	176	Membrane-anchored thioredoxin-like protein TlpA, s	97.49
d2fy6a1	143	Peptide methionine sulfoxide reductase MsrA/MsrB,	97.46
d2b5xa1	143	thiol:disulfide oxidoreductase YkuV {Bacillus subt	97.4
d1oaia_	59	FG-binding, C-terminal domain of TAP {Human (Homo	97.39
d1a8ya1	124	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	97.39
d1nhoa_	85	MTH807, thioredoxin/glutaredoxin-like protein {Arc	97.28
d1hyua4	96	Alkyl hydroperoxide reductase subunit F (AhpF), N-	97.19
d2b5ea1	140	Protein disulfide isomerase, PDI {Baker's yeast (S	97.09
d2c0ga2	122	Windbeutel, N-terminal domain {Fruit fly (Drosophi	97.03
d1lu4a_	134	Soluble secreted antigen MPT53 {Mycobacterium tube	96.96
d1zzoa1	134	Lipoprotein DsbF {Mycobacterium tuberculosis [TaxI	96.92
d1o73a_	144	Tryparedoxin I {Trypanosoma brucei brucei [TaxId:	96.91
d2djja1	116	Protein disulfide isomerase, PDI {Fungi (Humicola	96.91
d1i5ga_	144	Tryparedoxin II {Crithidia fasciculata [TaxId: 565	96.9
d1s3si_	50	p47 {Rat (Rattus norvegicus) [TaxId: 10116]}	96.64
d1o8xa_	144	Tryparedoxin I {Crithidia fasciculata [TaxId: 5656	96.48
d1vg5a_	73	Rhomboid family protein At3g58460 {Thale cress (Ar	96.43
d1oqya1	41	DNA repair protein Hhr23a {Human (Homo sapiens) [T	96.4
d1wgna_	63	Ubiquitin-associated protein 1, UBAP1 {Human (Homo	96.15
d1wj7a1	91	Ubiquitin-associated protein 2-like Ubap2l {Mouse	95.43
d1wjia_	63	Tudor domain containing protein 3, TDRD3 {Human (H	95.25
d2cx4a1	160	Bacterioferritin comigratory protein {Archaeon Aer	95.21
d1wiva_	73	Ubiquitin isopeptidase T {Thale cress (Arabidopsis	95.15
d1xb2b1	56	Elongation factor Ts (EF-Ts), N-terminal domain {C	95.03
d1wp0a1	160	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	94.87
d1e2ya_	167	Tryparedoxin peroxidase (thioredoxin peroxidase ho	94.54
d2bwba1	44	DSK2 {Baker's yeast (Saccharomyces cerevisiae) [Ta	94.51
d2trcp_	217	Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}	94.44
d2b7ka1	169	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	94.34
d2dnaa1	50	Ubiquilin-like protein Ubqlnl {Mouse (Mus musculus	94.31
d1aipc1	52	Elongation factor Ts (EF-Ts), N-terminal domain {T	94.3
d2cvba1	187	Probable thiol-disulfide isomerase/thioredoxin TTH	94.3
d1xzoa1	172	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	94.19
d2bmxa1	169	Alkyl hydroperoxide reductase AhpC {Mycobacterium	94.16
d1vdla_	80	Ubiquitin carboxyl-terminal hydrolase 25 {Mouse (M	94.11
d1z96a1	38	UBA-domain protein mud1 {Schizosaccharomyces pombe	94.08
d1g7ea_	122	Endoplasmic reticulum protein ERP29, N-terminal do	93.99
d1uula_	194	Tryparedoxin peroxidase (thioredoxin peroxidase ho	93.6
d1efub3	54	Elongation factor Ts (EF-Ts), N-terminal domain {E	93.23
d1we0a1	166	Alkyl hydroperoxide reductase AhpC {Amphibacillus	93.11
d1zyea1	158	Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [	92.79
d1wjka_	100	Thioredoxin-like structure containing protein C330	91.84
d1veja1	61	4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]	91.65
d2daha1	41	Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}	91.52
d2zcta1	237	Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]}	90.41
d1n8ja_	186	Alkyl hydroperoxide reductase AhpC {Salmonella typ	89.71
d2a4va1	156	Peroxiredoxin dot5 {Baker's yeast (Saccharomyces c	87.02
d1zofa1	170	Thioredoxin reductase TsaA {Helicobacter pylori [T	87.01
d1a8la1	119	Protein disulfide isomerase, PDI {Archaeon Pyrococ	85.91
d1mn3a_	54	Vacuolar protein sorting-associated protein vps9 {	84.86
d2cpwa1	51	Cbl-interacting protein p70, STS1 {Human (Homo sap	84.73
d1whca_	64	UBA/UBX 33.3 kDa protein {Mouse (Mus musculus) [Ta	84.58
d1veka_	84	Ubiquitin isopeptidase T {Thale cress (Arabidopsis	82.3
d2h01a1	170	Thioredoxin peroxidase 2 (thioredoxin peroxidase B	82.0
d1qmva_	197	Thioredoxin peroxidase 2 (thioredoxin peroxidase B	81.54
d1wgla_	59	Toll-interacting protein {Human (Homo sapiens) [Ta	80.05

>d2dlxa1 c.47.1.24 (A:1-147) UBX domain-containing protein 7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: UAS domain
domain: UBX domain-containing protein 7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.9e-34  Score=244.63  Aligned_cols=131  Identities=44%  Similarity=0.875  Sum_probs=125.0

Q ss_pred             chhhHHHHhhcCCCcccccccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCC
Q 036413          113 KNNNNNLASLYRPPVDLMFNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDD  192 (346)
Q Consensus       113 ~~~~~~l~~lf~PP~~l~~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~  192 (346)
                      ..+..+|++||+||++|+|.|+|++|+++||+++||||||||++||+.|+.|+|+||+|+.|+++++ +|||+|+++++ 
T Consensus         9 ~~~~~~~a~~~~pp~~i~~~~~~~~A~~~Ak~~~K~llV~~~~~~C~~C~~m~~~v~~d~~V~~~l~-~~fV~~~v~~~-   86 (147)
T d2dlxa1           9 DKKLTTLADLFRPPIDLMHKGSFETAKECGQMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIR-EHFIFWQVYHD-   86 (147)
T ss_dssp             CCCCCCCCCTTSCCTTTSCCSCHHHHHHHHHHHTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHH-HTEEEEEEESS-
T ss_pred             ccchHHHHHhhCCCccccccCCHHHHHHHHHHcCCcEEEEEecCCCCchHHHHHhccCCHHHHHHHh-hheeEeeeccc-
Confidence            4456689999999999999999999999999999999999999999999999999999999999999 99999999999 


Q ss_pred             CCCCCChHHHHHHhhcCCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHHcCC
Q 036413          193 DDDDDDSECRKVCGYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMESGP  251 (346)
Q Consensus       193 ~~~~~~~eg~~~~~~y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~~~~  251 (346)
                           +++|..+++.|++..||+++||||+||+.++.|.| +++++|++.|++||+.++
T Consensus        87 -----~~e~~~~~~~y~v~~~Pti~~idp~~ge~v~~~~~-~~~~~fl~~L~~fl~~~~  139 (147)
T d2dlxa1          87 -----SEEGQRYIQFYKLGDFPYVSILDPRTGQKLVEWHQ-LDVSSFLDQVTGFLGEHG  139 (147)
T ss_dssp             -----SHHHHHHHHHHTCCSSSEEEEECTTTCCCCEEESS-CCHHHHHHHHHHHHHHTC
T ss_pred             -----chhhhhhhhheecCceeEEEEEeCCCCeEecccCC-CCHHHHHHHHHHHHhhCC
Confidence                 99999999999999999999999999999988854 899999999999998775

>d1v92a_ a.5.2.3 (A:) NSFL1 (p97 ATPase) cofactor p47, UBA-like domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: TAP-C domain-like
domain: NSFL1 (p97 ATPase) cofactor p47, UBA-like domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.52  E-value=4.4e-15  Score=101.51  Aligned_cols=44  Identities=23%  Similarity=0.561  Sum_probs=41.2

Q ss_pred             hhHHHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhhcCC
Q 036413            8 KQRKRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNNNSN   52 (346)
Q Consensus         8 ~~~~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~~~~   52 (346)
                      ++++++|.|||+| ||+++++|++||+++||||+.||++||+.++
T Consensus         3 ~~~~~lI~qF~~i-Tg~~~~~A~~~Le~~~w~Le~Ai~~yfe~gg   46 (46)
T d1v92a_           3 EERQDALREFVAV-TGAEEDRARFFLESAGWDLQIALASFYEDGG   46 (46)
T ss_dssp             THHHHHHHHHHHH-TCCCHHHHHHHHHHTTSCSHHHHHHHHHTCC
T ss_pred             ccHHHHHHHHHHH-HCcCHHHHHHHHHHcCCcHHHHHHHHHhcCC
Confidence            4789999999999 8999999999999999999999999999763

>d2cr5a1 d.15.1.2 (A:8-103) UBX domain-containing protein 6 (Reproduction 8) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: UBX domain-containing protein 6 (Reproduction 8)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.33  E-value=1.4e-12  Score=102.18  Aligned_cols=66  Identities=23%  Similarity=0.491  Sum_probs=55.1

Q ss_pred             CCCCCCCCCCCCCCCeeEEEEEcCCCccc---------------------cCCcceEEecCCCCCCCCccCCcccchhhc
Q 036413          276 YPAVPEEPLQVARNLVCRIGVRLPDGQEA---------------------NQTRQFRLTRPDPGAPKPLDYNSKMTFQES  334 (346)
Q Consensus       276 ~~~~~~EP~~~~~~~~trIqiRlpdG~ri---------------------~~~~~f~l~~~~P~~~~~l~~~~d~Tieea  334 (346)
                      .+.+|+||.. +.+++|+|+||||||+|+                     .....|.|++.||+  +.+..+.+.||+++
T Consensus         2 ~~~lp~EP~~-~~~~~~~i~iRlPdG~r~~r~F~~~dtl~~l~~fv~~~~~~~~~f~l~~~~Pr--~~~~~d~~~TL~e~   78 (96)
T d2cr5a1           2 VPDLPEEPSE-TAEEVVTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKVGYHKSLYRLSTSFPR--RALEVEGGSSLEDI   78 (96)
T ss_dssp             CCCCCCCCCS-SCSSEEEEEEECTTSCEEEEEEESSSBTHHHHHHHHHHTCCTTTEEEECSSSC--CBCCCCSSCBHHHH
T ss_pred             CCCCCCCCCC-CCCCeEEEEEECCCCCEEEEEECCcccHHHHHHHHHHhccCcccceeecCCCc--eecCccCCCcHHHC
Confidence            3679999988 677899999999999998                     13579999999996  56666788999999


Q ss_pred             CCCceeEEEE
Q 036413          335 GLNNSVILVT  344 (346)
Q Consensus       335 gL~n~~vl~~  344 (346)
                      ||.++++|++
T Consensus        79 gl~p~~~L~v   88 (96)
T d2cr5a1          79 GITVDTVLNV   88 (96)
T ss_dssp             TCSSCEEEEE
T ss_pred             CCCCCCEEEE
Confidence            9997766654

>d1i42a_ d.15.1.2 (A:) p47 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: p47
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.31  E-value=1.1e-12  Score=101.79  Aligned_cols=56  Identities=30%  Similarity=0.404  Sum_probs=47.8

Q ss_pred             CCCCeeEEEEEcCCCccc-----------------------cCCcceEEecCCCCCCCCccCCcccchhhcCCCceeEEE
Q 036413          287 ARNLVCRIGVRLPDGQEA-----------------------NQTRQFRLTRPDPGAPKPLDYNSKMTFQESGLNNSVILV  343 (346)
Q Consensus       287 ~~~~~trIqiRlpdG~ri-----------------------~~~~~f~l~~~~P~~~~~l~~~~d~TieeagL~n~~vl~  343 (346)
                      +..++|+||||||||+|+                       .....|+|++.||+  +.+ .+.++||+|+||.|++|+|
T Consensus        10 e~~p~t~I~iRlPdG~~~~~~F~~~~tl~dv~~~v~~~~~~~~~~~f~L~t~~Pr--r~l-~d~~~TL~e~gL~~s~vl~   86 (89)
T d1i42a_          10 EAEPTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPN--KEL-ADENQTLKEANLLNAVIVQ   86 (89)
T ss_dssp             TTSCCEEEEEEETTTCCEEEEECSSSCGGGHHHHHHHHCTTTSSCCEEEEETTTT--EEC-CCCSSCSGGGTTCCSEEEE
T ss_pred             CCCCcEEEEEEcCCCCEEEEEECCchhHHHHHHHHHHhCccCCCCCEEEecCCCC--ccc-CCCcCcHHHCCCcCceEEE
Confidence            345689999999999998                       12468999999995  445 5789999999999999999


Q ss_pred             Ee
Q 036413          344 TL  345 (346)
Q Consensus       344 ~~  345 (346)
                      +|
T Consensus        87 k~   88 (89)
T d1i42a_          87 RL   88 (89)
T ss_dssp             EE
T ss_pred             Ee
Confidence            99

>d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein p19, TLP19
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=7.4e-12  Score=102.83  Aligned_cols=109  Identities=15%  Similarity=0.209  Sum_probs=86.3

Q ss_pred             cCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCCC
Q 036413          133 GSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDS  212 (346)
Q Consensus       133 gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~  212 (346)
                      -+|++|++.|++++|+|||+++.+||..|+.|.+.++.++.|.. ++ ++||+..++.+.     ..+...+  .+....
T Consensus        12 ~~~~~al~~A~~~~Kpvlv~F~a~wC~~C~~~~~~~~~~~~~~~-~~-~~fv~v~vd~~~-----~~~~~~~--~~~~~~   82 (135)
T d1sena_          12 RTLEDGKKEAAASGLPLMVIIHKSWCGACKALKPKFAESTEISE-LS-HNFVMVNLEDEE-----EPKDEDF--SPDGGY   82 (135)
T ss_dssp             CCHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHTCHHHHH-HH-TTSEEEEEEGGG-----SCSCGGG--CTTCSC
T ss_pred             eEHHHHHHHHHHcCCcEEEEEEecCCCCceecchhhhhhHHHHH-hc-CCcEEEeCCCCc-----CHHHHHH--Hhhccc
Confidence            38999999999999999999999999999999999999999988 56 799999888762     2221211  223346


Q ss_pred             CceEEEEeCCCCceEEEEeC----------CCChHHHHHHHHHHHHcCC
Q 036413          213 LPVVLVIDPITGEKMRKWCG----------MVDPVSLLEDLLSFMESGP  251 (346)
Q Consensus       213 ~P~i~iidp~tge~l~~~~G----------~~~~~~~i~~L~~fl~~~~  251 (346)
                      +|++++++| .|..+..+.|          ..+.+.++..+.+.++..+
T Consensus        83 ~Pt~~~~d~-~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  130 (135)
T d1sena_          83 IPRILFLDP-SGKVHPEIINENGNPSYKYFYVSAEQVVQGMKEAQERLT  130 (135)
T ss_dssp             SSEEEEECT-TSCBCTTCCCTTSCTTSTTCCCSHHHHHHHHHHHHHHHG
T ss_pred             ceeEEEECC-CCeEEEEecCCCCCcchhccCCCHHHHHHHHHHHHHHhh
Confidence            899999998 5777655444          3567889998888886644

>d2fwha1 c.47.1.1 (A:428-544) Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma)
species: Escherichia coli [TaxId: 562]

Probab=99.17  E-value=3.6e-11  Score=95.97  Aligned_cols=105  Identities=15%  Similarity=0.242  Sum_probs=86.7

Q ss_pred             ccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCC
Q 036413          132 NGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLD  211 (346)
Q Consensus       132 ~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~  211 (346)
                      ..++++++..|  ++|++||++.++||..|+.|...++.++.|.+..+  +|+++.+++..    .......++..|++.
T Consensus        10 ~~~~~~~l~~~--~gK~vlv~F~a~wC~~C~~~~~~~~~~~~v~~~~~--~~~~~~~~~~~----~~~~~~~l~~~~~v~   81 (117)
T d2fwha1          10 VDELNQALVEA--KGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALA--DTVLLQANVTA----NDAQDVALLKHLNVL   81 (117)
T ss_dssp             HHHHHHHHHHH--TTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTT--TSEEEEEECTT----CCHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHc--CCCeEEEEEecccCCcccccchhHHhHHHHHHhcc--ceEEEeccccc----chhHHHHHHhhhehh
Confidence            34566666544  58999999999999999999999999999999887  67777776651    156678899999999


Q ss_pred             CCceEEEEeCCCCceEE--EEeCCCChHHHHHHHHH
Q 036413          212 SLPVVLVIDPITGEKMR--KWCGMVDPVSLLEDLLS  245 (346)
Q Consensus       212 ~~P~i~iidp~tge~l~--~~~G~~~~~~~i~~L~~  245 (346)
                      .+|++.++++ .|+.+.  ++.|..++++|++.|.+
T Consensus        82 ~~Pt~~~~~~-~G~~~~~~~~~G~~~~~~~~~~l~~  116 (117)
T d2fwha1          82 GLPTILFFDG-QGQEHPQARVTGFMDAETFSAHLRD  116 (117)
T ss_dssp             SSSEEEEECT-TSCBCGGGCBCSCCCHHHHHHHHHH
T ss_pred             hceEEEEEeC-CCcEEecccccccCCHHHHHHHHhc
Confidence            9999999997 587663  57899999999988864

>d1wj4a_ d.15.1.2 (A:) Hypothetical protein KIAA0794 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: Hypothetical protein KIAA0794
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=2.2e-09  Score=87.66  Aligned_cols=56  Identities=23%  Similarity=0.398  Sum_probs=44.8

Q ss_pred             CCCCeeEEEEEcCCCccc---------------------cCCcceEEecCCCCCCCCcc-CCcccchhhcCCCceeEEEE
Q 036413          287 ARNLVCRIGVRLPDGQEA---------------------NQTRQFRLTRPDPGAPKPLD-YNSKMTFQESGLNNSVILVT  344 (346)
Q Consensus       287 ~~~~~trIqiRlpdG~ri---------------------~~~~~f~l~~~~P~~~~~l~-~~~d~TieeagL~n~~vl~~  344 (346)
                      ...++|+||||||||+|+                     ...+.|+|.+.||.  +.+. .+.++||+|+||.++.+|++
T Consensus        39 ~~~p~~~l~iRlPdG~r~~r~F~~~~tl~~l~~~v~~~~~~~~~~~L~~~fPr--~~l~~~d~~~TL~e~gL~P~~~L~v  116 (124)
T d1wj4a_          39 VNGPKAQLMLRYPDGKREQITLPEQAKLLALVKHVQSKGYPNERFELLTNFPR--RKLSHLDYDITLQEAGLCPQETVFV  116 (124)
T ss_dssp             CSSCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHCCTTTEEEECSSSC--CEETSSCSSSCTTTTTCCSSBCCEE
T ss_pred             CCCCceEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcccCCcceEEeecccc--cccccccccCcHHHcCCCCCCEEEE
Confidence            456799999999999998                     13589999999995  5554 46789999999996665543

>d1h8ca_ d.15.1.2 (A:) Fas-associated factor 1, Faf1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: Fas-associated factor 1, Faf1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=2.1e-09  Score=81.40  Aligned_cols=54  Identities=17%  Similarity=0.260  Sum_probs=42.8

Q ss_pred             CCCeeEEEEEcCCCccc---------------------cCCcceEEecCCCCCCCCcc-CCcccchhhcCCCceeEEE
Q 036413          288 RNLVCRIGVRLPDGQEA---------------------NQTRQFRLTRPDPGAPKPLD-YNSKMTFQESGLNNSVILV  343 (346)
Q Consensus       288 ~~~~trIqiRlpdG~ri---------------------~~~~~f~l~~~~P~~~~~l~-~~~d~TieeagL~n~~vl~  343 (346)
                      ..++|+|+||||||+|+                     ..+..|+|.+.||+  +.+. .+.++||+|+||.++++|+
T Consensus         2 ~e~~~~i~iRlPdG~~~~~~F~~~~tl~~v~~~v~~~~~~~~~~~l~~~~Pr--~~l~~~d~~~TL~e~gL~p~~~L~   77 (82)
T d1h8ca_           2 AEPVSKLRIRTPSGEFLERRFLASNKLQIVFDFVASKGFPWDEYKLLSTFPR--RDVTQLDPNKSLLEVKLFPQETLF   77 (82)
T ss_dssp             CCCCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHTCCSSSEEEEETTTT--EETTTCCTTSBHHHHCCCSEEEEE
T ss_pred             CCCcEEEEEECCCCCEEEEEECCCCcHHHHHHHHHhcCCCCCceEEEecCcc--cccccccccCCHHHCCCCCCCEEE
Confidence            46799999999999998                     13578999999995  4443 4578899999998555554

>d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.79  E-value=9.2e-09  Score=81.90  Aligned_cols=101  Identities=12%  Similarity=0.247  Sum_probs=78.7

Q ss_pred             cccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCC
Q 036413          131 FNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKL  210 (346)
Q Consensus       131 ~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~  210 (346)
                      ....|++.+..|++.+|++||+++++||..|+.|...+   +.+.+...  +.+|..++.+        +...++..|++
T Consensus        13 s~~~~~~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~---~~l~~~~~--~~~~~~vd~~--------~~~~l~~~~~V   79 (114)
T d1xfla_          13 TVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFF---ADLAKKLP--NVLFLKVDTD--------ELKSVASDWAI   79 (114)
T ss_dssp             SHHHHHHHHHHHHHTTCEEEEEEECTTCHHHHHHHHHH---HHHHHHCS--SEEEEEEETT--------TSHHHHHHTTC
T ss_pred             CHHHHHHHHHHhhccCCeEEEEEEcCCCCCccccccch---hhhccccc--ccceeEEEee--------eceeeccccce
Confidence            45679999999999999999999999999999995322   23333333  5777777766        33568899999


Q ss_pred             CCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHH
Q 036413          211 DSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFM  247 (346)
Q Consensus       211 ~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl  247 (346)
                      ..+|++.++.  .|+.+..+.|. ++++|.+.|.++|
T Consensus        80 ~~~Pt~~~~~--~G~~v~~~~G~-~~~~l~~~i~k~l  113 (114)
T d1xfla_          80 QAMPTFMFLK--EGKILDKVVGA-KKDELQSTIAKHL  113 (114)
T ss_dssp             CSSSEEEEEE--TTEEEEEEESC-CHHHHHHHHHHHC
T ss_pred             eeeEEEEEEE--CCEEEEEEeCc-CHHHHHHHHHHhh
Confidence            9999999984  79999999994 6777776666554

>d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=98.69  E-value=3.5e-08  Score=78.26  Aligned_cols=100  Identities=17%  Similarity=0.184  Sum_probs=80.3

Q ss_pred             cccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCC
Q 036413          131 FNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKL  210 (346)
Q Consensus       131 ~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~  210 (346)
                      ....|++.+..+++.+|.++|+++++||..|+.+...+   +.+..-.+ .++.|..++++      ..  ..++..|++
T Consensus         9 t~~~fd~~l~~~~~~~k~vvv~f~a~wC~~C~~~~p~~---~~l~~~~~-~~v~~~~vd~d------~~--~~l~~~~~v   76 (112)
T d1ep7a_           9 SKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLF---ETLSNDYA-GKVIFLKVDVD------AV--AAVAEAAGI   76 (112)
T ss_dssp             SHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHH---HHHHHHTT-TTSEEEEEETT------TT--HHHHHHHTC
T ss_pred             CHHHHHHHHHHHhhcCCeEEEEEEcCCcCCCcccchhh---hhhhhccc-ceEEEEEeecc------cc--ccccccccc
Confidence            34578999999999999999999999999999996444   45666666 78999999887      32  578899999


Q ss_pred             CCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHH
Q 036413          211 DSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLS  245 (346)
Q Consensus       211 ~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~  245 (346)
                      ..+|++.++.  .|+.+..+.| .+++++.+.|.+
T Consensus        77 ~~~Pt~~~~~--~G~~v~~~~G-~~~~~l~~~i~k  108 (112)
T d1ep7a_          77 TAMPTFHVYK--DGVKADDLVG-ASQDKLKALVAK  108 (112)
T ss_dssp             CBSSEEEEEE--TTEEEEEEES-CCHHHHHHHHHH
T ss_pred             cCCCEEEEEE--CCEEEEEEeC-cCHHHHHHHHHH
Confidence            9999998885  6999999999 466554444433

>d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=98.62  E-value=7.6e-08  Score=75.12  Aligned_cols=93  Identities=15%  Similarity=0.289  Sum_probs=76.1

Q ss_pred             hhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCCCCceEEEEeC
Q 036413          142 GSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVLVIDP  221 (346)
Q Consensus       142 Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~i~iidp  221 (346)
                      ..+.+|++||++.++||..|+.|.. +|  ..+..-.. .++.|..++++      ..  ..++..|++..+|++.++. 
T Consensus        15 v~~s~kpvlv~F~a~wC~~C~~~~p-~~--~~~~~~~~-~~~~~~~vd~d------~~--~~l~~~~~V~~~Pt~~~~~-   81 (107)
T d1dbya_          15 VLESSVPVLVDFWAPWCGPCRIIAP-VV--DEIAGEYK-DKLKCVKLNTD------ES--PNVASEYGIRSIPTIMVFK-   81 (107)
T ss_dssp             TTTCSSCEEEEEECTTCHHHHHHHH-HH--HHHHHHTT-TTCEEEEEETT------TC--HHHHHHHTCCSSCEEEEES-
T ss_pred             HHhCCCcEEEEEECCCCCCccccCh-HH--HHHHHhhc-ccceEEEEecc------cc--hhHHHHhcccceEEEEEEE-
Confidence            3556899999999999999999964 33  34555566 78888888888      32  4688999999999999996 


Q ss_pred             CCCceEEEEeCCCChHHHHHHHHHHHH
Q 036413          222 ITGEKMRKWCGMVDPVSLLEDLLSFME  248 (346)
Q Consensus       222 ~tge~l~~~~G~~~~~~~i~~L~~fl~  248 (346)
                       .|+.+.+..|..+.++|.+.|.++|+
T Consensus        82 -~G~~v~~~~G~~~~~~l~~~i~~~L~  107 (107)
T d1dbya_          82 -GGKKCETIIGAVPKATIVQTVEKYLN  107 (107)
T ss_dssp             -SSSEEEEEESCCCHHHHHHHHHHHCC
T ss_pred             -CCeEEEEEeCCCCHHHHHHHHHHhhC
Confidence             69999999999999999888888763

>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Anabaena sp., pcc 7120 [TaxId: 1167]

Probab=98.61  E-value=1.1e-07  Score=74.27  Aligned_cols=99  Identities=13%  Similarity=0.136  Sum_probs=80.8

Q ss_pred             ccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCC
Q 036413          132 NGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLD  211 (346)
Q Consensus       132 ~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~  211 (346)
                      ..+|++..   .+.+|++||++.++||..|+.+.+.+   +.+..-.. .++.|..++++      .  ...++..|++.
T Consensus         9 ~~~f~~~v---~~~~~~vlv~f~a~wC~~C~~~~~~~---~~~~~~~~-~~~~~~~vd~d------~--~~~l~~~~~I~   73 (108)
T d1thxa_           9 DAEFESEV---LKAEQPVLVYFWASWCGPCQLMSPLI---NLAANTYS-DRLKVVKLEID------P--NPTTVKKYKVE   73 (108)
T ss_dssp             GGGHHHHT---TTCSSCEEEEEECTTCTTHHHHHHHH---HHHHHHTT-TTCEEEEEEST------T--CHHHHHHTTCC
T ss_pred             HHHHHHHH---HhCCCcEEEEEECCCCCCccccchHH---HHHHHhcC-Ccceeceeccc------c--cHHHHHHhccc
Confidence            45676544   34578999999999999999996644   55666677 78888888877      2  35789999999


Q ss_pred             CCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHH
Q 036413          212 SLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFM  247 (346)
Q Consensus       212 ~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl  247 (346)
                      .+|++.++.  .|+.+....|..+.++|.+.|.++|
T Consensus        74 ~~Pt~~~~~--~g~~v~~~~G~~~~~~l~~~i~~~L  107 (108)
T d1thxa_          74 GVPALRLVK--GEQILDSTEGVISKDKLLSFLDTHL  107 (108)
T ss_dssp             SSSEEEEEE--TTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred             CCCEEEEEE--CCEEEEEEeCCCCHHHHHHHHHHhc
Confidence            999999997  5999999999999998888888776

>d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]

Probab=98.55  E-value=1.2e-07  Score=74.95  Aligned_cols=99  Identities=15%  Similarity=0.254  Sum_probs=77.7

Q ss_pred             cccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhc-cCcEEEEEeecCCCCCCCChHHHHHHhhcC
Q 036413          131 FNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIR-ASNFIFWQVYDDDDDDDDDSECRKVCGYYK  209 (346)
Q Consensus       131 ~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~-~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~  209 (346)
                      ...+|++.++.++..+|++||+++++||..|+.|..      .+.++.+ -.++.|.-++.+        +...++..|+
T Consensus        11 s~e~~~~~l~~~~~~~k~vvv~F~a~wC~~C~~~~p------~~~~~~~~~~~~~~~~vd~d--------~~~~l~~~~~   76 (113)
T d1ti3a_          11 TVDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAP------IFAELAKKFPNVTFLKVDVD--------ELKAVAEEWN   76 (113)
T ss_dssp             SHHHHHHHHHHHTTSSSEEEEEEECSSCHHHHHHHH------HHHHHHHHCSSEEEEEEETT--------TCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHcCCCEEEEEEEcCccccchhhhh------hhhhhhccCCCceEEeeeee--------ccccccccCe
Confidence            356789999999999999999999999999999954      3333332 136778777776        2356899999


Q ss_pred             CCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHH
Q 036413          210 LDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSF  246 (346)
Q Consensus       210 ~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~f  246 (346)
                      +..+|++.++.  .|+.+..+.| .++++|.+.|.+.
T Consensus        77 I~~~Pt~~~~k--~G~~v~~~~G-~~~~~l~~~i~k~  110 (113)
T d1ti3a_          77 VEAMPTFIFLK--DGKLVDKTVG-ADKDGLPTLVAKH  110 (113)
T ss_dssp             CSSTTEEEEEE--TTEEEEEEEC-CCTTHHHHHHHHH
T ss_pred             ecccceEEEEE--CCEEEEEEcC-CCHHHHHHHHHHH
Confidence            99999999996  6999999999 4776666666554

>d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]

Probab=98.50  E-value=1.3e-07  Score=73.24  Aligned_cols=99  Identities=14%  Similarity=0.308  Sum_probs=76.6

Q ss_pred             ccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCC
Q 036413          132 NGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLD  211 (346)
Q Consensus       132 ~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~  211 (346)
                      ..+|++..   .+.+|.+||+++++||..|..|...+   ..+.+-.. .++.+..++.+      .  ...++..|++.
T Consensus         6 d~~f~~~v---~~~~~~vlv~F~a~wC~~C~~~~~~~---~~l~~~~~-~~~~~~~v~~d------~--~~~l~~~~~V~   70 (104)
T d1fb6a_           6 DSSWKEFV---LESEVPVMVDFWAPWCGPCKLIAPVI---DELAKEYS-GKIAVYKLNTD------E--APGIATQYNIR   70 (104)
T ss_dssp             TTTHHHHT---TTCSSCEEEEEECTTCHHHHHHHHHH---HHHHHHTT-TTCEEEEEETT------T--CHHHHHHTTCC
T ss_pred             hhhHHHHH---HcCCCcEEEEEEcCccCCccccCchh---HHHHHhhc-CccceeEEecc------c--chhhhhhccee
Confidence            45677644   45678999999999999999995432   13445555 67778777766      2  35689999999


Q ss_pred             CCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHH
Q 036413          212 SLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFM  247 (346)
Q Consensus       212 ~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl  247 (346)
                      .+|++.++.  .|+.+.++.|..+++.|.+.|.++|
T Consensus        71 ~~Pt~~~~~--~G~~v~~~~G~~~~~~l~~~i~~~L  104 (104)
T d1fb6a_          71 SIPTVLFFK--NGERKESIIGAVPKSTLTDSIEKYL  104 (104)
T ss_dssp             SSSEEEEEE--TTEEEEEEEECCCHHHHHHHHHHHC
T ss_pred             eeeEEEEEE--cCeEEEEEeCCCCHHHHHHHHHHhC
Confidence            999999985  6999999999999988887777653

>d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Escherichia coli [TaxId: 562]

Probab=98.49  E-value=3.1e-07  Score=71.54  Aligned_cols=99  Identities=14%  Similarity=0.177  Sum_probs=77.7

Q ss_pred             ccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCC
Q 036413          132 NGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLD  211 (346)
Q Consensus       132 ~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~  211 (346)
                      ..+|++.   ..+.+|.+||+++++||..|+.+...+   ..+..-.. .++.+..+++++     .   ..++..|++.
T Consensus         9 ~~~f~~~---v~~~~~~v~v~F~a~wC~~C~~~~~~~---~~~a~~~~-~~~~~~~vd~d~-----~---~~l~~~~~v~   73 (108)
T d2trxa_           9 DDSFDTD---VLKADGAILVDFWAEWCGPCKMIAPIL---DEIADEYQ-GKLTVAKLNIDQ-----N---PGTAPKYGIR   73 (108)
T ss_dssp             TTTHHHH---TTTCSSEEEEEEECTTCHHHHHHHHHH---HHHHHHTT-TTEEEEEEETTT-----C---TTHHHHTTCC
T ss_pred             HHHHHHH---HHhCCCcEEEEEECCCCCCccccCcHH---HHHHHHhh-cceeeeeccccc-----h---hhHHHHhCCC
Confidence            4566653   346689999999999999998885433   34455556 789999988872     2   4688999999


Q ss_pred             CCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHH
Q 036413          212 SLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFM  247 (346)
Q Consensus       212 ~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl  247 (346)
                      .+|++.++.  .|+.+.++.|..+++.|.+.|.+-|
T Consensus        74 ~~PT~~~~~--~G~~v~~~~G~~~~~~l~~~i~~~L  107 (108)
T d2trxa_          74 GIPTLLLFK--NGEVAATKVGALSKGQLKEFLDANL  107 (108)
T ss_dssp             SSSEEEEEE--TTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred             cEEEEEEEE--CCEEEEEEeCCCCHHHHHHHHHHhc
Confidence            999998886  5999999999999888887776654

>d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.49  E-value=2e-07  Score=73.28  Aligned_cols=99  Identities=14%  Similarity=0.218  Sum_probs=78.5

Q ss_pred             cccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhc-cCcEEEEEeecCCCCCCCChHHHHHHhhcC
Q 036413          131 FNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIR-ASNFIFWQVYDDDDDDDDDSECRKVCGYYK  209 (346)
Q Consensus       131 ~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~-~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~  209 (346)
                      ....|++++..|.  +|.++|+++++||..|..+.      +.+.++.+ -.+..|+.++.+      .  ...++..|+
T Consensus         8 s~~~f~~~l~~~~--~klvvv~F~a~wC~~Ck~~~------p~~~~la~~~~~~~f~~vd~d------~--~~~l~~~~~   71 (107)
T d1gh2a_           8 SDPDFQPELSGAG--SRLAVVKFTMRGCGPCLRIA------PAFSSMSNKYPQAVFLEVDVH------Q--CQGTAATNN   71 (107)
T ss_dssp             SGGGHHHHHHHTT--TSCEEEEEECSSCHHHHHHH------HHHHHHHHHCTTSEEEEEETT------T--SHHHHHHTT
T ss_pred             CHHHHHHHHHhCC--CCEEEEEEECCCCCCccccc------hhhhccccccccccccccccc------c--chhhhhhcC
Confidence            3567888887654  78999999999999999984      44444443 125788888877      2  356889999


Q ss_pred             CCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHH
Q 036413          210 LDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFME  248 (346)
Q Consensus       210 ~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~  248 (346)
                      +..+|++.+.-  .|+.+.++.| .+++.+.+.|.++|+
T Consensus        72 v~~~Pt~~~~~--~G~~v~~~~G-~~~~~l~~~i~k~le  107 (107)
T d1gh2a_          72 ISATPTFQFFR--NKVRIDQYQG-ADAVGLEEKIKQHLE  107 (107)
T ss_dssp             CCSSSEEEEEE--TTEEEEEEES-SCHHHHHHHHHHHHC
T ss_pred             ceeceEEEEEE--CCEEEEEEeC-CCHHHHHHHHHHhhC
Confidence            99999999994  7999999999 489999888888874

>d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.43  E-value=3.1e-07  Score=71.53  Aligned_cols=96  Identities=20%  Similarity=0.351  Sum_probs=72.7

Q ss_pred             cCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCCC
Q 036413          133 GSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDS  212 (346)
Q Consensus       133 gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~  212 (346)
                      -.|+++++.+  .+|+++|+++++||.+|..+..-+   +.+.+-..  +.+|..++.+      .  ...++..|++..
T Consensus         9 ~~f~~~l~~~--~~k~vvv~F~a~wC~~C~~~~p~~---~~l~~~~~--~~~~~~vd~d------~--~~~~~~~~~V~~   73 (105)
T d2ifqa1           9 TAFQEALDAA--GDKLVVVDFSATWCGPCKMIKPFF---HSLSEKYS--NVIFLEVDVD------D--CQDVASECEVKC   73 (105)
T ss_dssp             HHHHHHHHHT--TTSCEEEEEECTTCHHHHHHHHHH---HHHHHHCT--TSEEEEEETT------T--CHHHHHHTTCCB
T ss_pred             HHHHHHHHhC--CCCEEEEEEEcCCccchhhhhhhh---hhhccccc--cceeeecccc------c--CHhHHHHcCceE
Confidence            4577777665  469999999999999999995433   23333333  5678888777      2  346889999999


Q ss_pred             CceEEEEeCCCCceEEEEeCCCChHHHHHHHHHH
Q 036413          213 LPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSF  246 (346)
Q Consensus       213 ~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~f  246 (346)
                      +|++.++.  .|+.+.++.|. +++++.+.|.++
T Consensus        74 ~Pt~~~~~--~G~~v~~~~G~-~~~~l~~~i~~~  104 (105)
T d2ifqa1          74 MPTFQFFK--KGQKVGEFSGA-NKEKLEATINEL  104 (105)
T ss_dssp             SSEEEEEE--TTEEEEEEESC-CHHHHHHHHHHH
T ss_pred             EEEEEEEE--CCEEEEEEeCC-CHHHHHHHHHhh
Confidence            99999995  69999999995 777776666654

>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]

Probab=98.43  E-value=1.2e-07  Score=73.63  Aligned_cols=97  Identities=13%  Similarity=0.195  Sum_probs=75.5

Q ss_pred             ccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCC
Q 036413          132 NGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLD  211 (346)
Q Consensus       132 ~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~  211 (346)
                      ..+|++++    +.+|+++|+++++||..|+.+...+.   .+..-.+ +++.|..++.+      ..  ..++..|++.
T Consensus         7 ~~~f~~~i----~~~k~vvv~F~a~wC~~C~~~~~~~~---~l~~~~~-~~~~~~~vd~~------~~--~~~~~~~~V~   70 (105)
T d1nw2a_           7 DANFQQAI----QGDKPVLVDFWAAWCGPCRMMAPVLE---EFAEAHA-DKVTVAKLNVD------EN--PETTSQFGIM   70 (105)
T ss_dssp             TTTHHHHT----TSSSCEEEEEECTTCHHHHHHHHHHH---HHHHHHT-TTCEEEEEETT------TC--HHHHHHTTCC
T ss_pred             HHHHHHHH----hCCCcEEEEEECCCCCCcccccchhh---hhhhhcC-CceEEEEEECC------CC--cccHHHCCcc
Confidence            45677754    56899999999999999999954332   2333445 78999999888      32  4678999999


Q ss_pred             CCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHH
Q 036413          212 SLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSF  246 (346)
Q Consensus       212 ~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~f  246 (346)
                      .+|++.++.  .|+.+.+..|..+.++|.+.|.+.
T Consensus        71 ~~Pt~~~~~--~G~~~~~~~G~~~~~~l~~~i~~~  103 (105)
T d1nw2a_          71 SIPTLILFK--GGEPVKQLIGYQPKEQLEAQLADV  103 (105)
T ss_dssp             BSSEEEEEE--TTEEEEEEESCCCHHHHHHHTTTT
T ss_pred             eeeEEEEEE--CCEEEEEEECCCCHHHHHHHHHHH
Confidence            999999996  599999999998887776665543

>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]

Probab=98.37  E-value=6e-07  Score=70.96  Aligned_cols=98  Identities=10%  Similarity=0.116  Sum_probs=75.1

Q ss_pred             cccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhc-cCcEEEEEeecCCCCCCCChHHHHHHhhcC
Q 036413          131 FNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIR-ASNFIFWQVYDDDDDDDDDSECRKVCGYYK  209 (346)
Q Consensus       131 ~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~-~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~  209 (346)
                      -..+|.++++.+  .+|+++|+++.+||..|+.+.      +.+.++.+ =.+.+|+.++.+       .+...+++.|+
T Consensus        12 ~~d~f~~~l~~~--~~k~vvv~f~a~wC~~C~~~~------p~~~~l~~~~~~v~~~~vd~~-------~~~~~l~~~~~   76 (112)
T d1f9ma_          12 NKDTFWPIVKAA--GDKPVVLDMFTQWCGPCKAMA------PKYEKLAEEYLDVIFLKLDCN-------QENKTLAKELG   76 (112)
T ss_dssp             CTTTHHHHHHTC--TTSCEEEEEECTTCHHHHHHH------HHHHHHHHHCTTSEEEEEECS-------STTHHHHHHHC
T ss_pred             CHHHHHHHHHHc--CCCEEEEEEEcCCCcchHHHH------HHHhhhccccccceeeccccc-------ccchhhHhhee
Confidence            356788887665  457999999999999999995      33444443 035788888776       23467899999


Q ss_pred             CCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHH
Q 036413          210 LDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSF  246 (346)
Q Consensus       210 ~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~f  246 (346)
                      +..+|+++++-  .|+.+.++.|. +++.+++.|+..
T Consensus        77 V~~~Pt~~~~k--~G~~v~~~~G~-~~~~l~e~i~~~  110 (112)
T d1f9ma_          77 IRVVPTFKILK--ENSVVGEVTGA-KYDKLLEAIQAA  110 (112)
T ss_dssp             CSSSSEEEEEE--TTEEEEEEESS-CHHHHHHHHHHH
T ss_pred             eccCCEEEEEE--CCEEEEEEeCC-CHHHHHHHHHHc
Confidence            99999999994  69999999995 777888777654

>d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.24  E-value=2.6e-06  Score=66.61  Aligned_cols=97  Identities=13%  Similarity=0.304  Sum_probs=72.4

Q ss_pred             ccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCC
Q 036413          132 NGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLD  211 (346)
Q Consensus       132 ~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~  211 (346)
                      ..+|+..+..+  .+|++||++.++||..|+.+...+   +.+.+-.+ +++.++.++.+      .  ...+++.|++.
T Consensus        13 ~~~~~~~l~~~--~~k~vlv~f~a~wC~~C~~~~p~~---~~l~~~~~-~~~~~~~i~~d------~--~~~l~~~~~V~   78 (111)
T d1xwaa_          13 KADLDGQLTKA--SGKLVVLDFFATWCGPCKMISPKL---VELSTQFA-DNVVVLKVDVD------E--CEDIAMEYNIS   78 (111)
T ss_dssp             HHHHHHHHHHH--TTSEEEEEEECTTCHHHHHHHHHH---HHHHHHTT-TTEEEEEEETT------T--CHHHHHHTTCC
T ss_pred             HHHHHHHHHhc--CCCEEEEEEECCcccCccccchhH---HHHhhhcc-cceEEEEEEee------c--CcchhhcCCCc
Confidence            34566666554  689999999999999999995444   34445555 67888888777      3  24588999999


Q ss_pred             CCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHHc
Q 036413          212 SLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMES  249 (346)
Q Consensus       212 ~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~~  249 (346)
                      .+|++.++.  .|+.+..+.|. +++.    |.+++++
T Consensus        79 ~~Pt~~~~~--~G~~v~~~~G~-~~~~----l~~~I~~  109 (111)
T d1xwaa_          79 SMPTFVFLK--NGVKVEEFAGA-NAKR----LEDVIKA  109 (111)
T ss_dssp             SSSEEEEEE--TTEEEEEEESC-CHHH----HHHHHHH
T ss_pred             cccEEEEEE--CCEEEEEEeCC-CHHH----HHHHHHh
Confidence            999999985  69999999995 4544    4455543

>d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.23  E-value=3.2e-06  Score=65.33  Aligned_cols=95  Identities=16%  Similarity=0.167  Sum_probs=68.6

Q ss_pred             HHHHHhhhcCc-EEEEEecCCCCccccccccccCCCHHHHHHh------ccCcEEEEEeecCCCCCCCChHHHHHHhhcC
Q 036413          137 KAKDVGSDENK-WLLVNLQSPKEFTSHTLNRDTWADEAVSQTI------RASNFIFWQVYDDDDDDDDDSECRKVCGYYK  209 (346)
Q Consensus       137 ~A~~~Ak~~~K-~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i------~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~  209 (346)
                      +.++.++..+| .+++++.++||..|+.+-+      .+.++.      ...++.+..++.+        +...++..|+
T Consensus         5 ~~~e~~~~~~~~v~i~~F~a~wC~~C~~~~p------~~~~la~~~~~~~~~~v~~~~id~~--------~~~~l~~~~~   70 (107)
T d1a8la2           5 ETKQAIRNIDQDVRILVFVTPTCPYCPLAVR------MAHKFAIENTKAGKGKILGDMVEAI--------EYPEWADQYN   70 (107)
T ss_dssp             HHHHHHTTCCSCEEEEEEECSSCTTHHHHHH------HHHHHHHHHHHTTCCCEEEEEEEGG--------GCHHHHHHTT
T ss_pred             HHHHHHHhcCCCeEEEEEEcCccccchhhCh------hHHhhhhhhhhccCCcEEEEEeccc--------cccccccccc
Confidence            45555566454 5566799999999988843      222221      2134566666554        4467899999


Q ss_pred             CCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHH
Q 036413          210 LDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFM  247 (346)
Q Consensus       210 ~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl  247 (346)
                      +..+|++.| . +.|+.+.++.|..+.+.|++.|.+.|
T Consensus        71 V~~vPTi~i-~-~~G~~~~~~~G~~~~~~~~~~i~~al  106 (107)
T d1a8la2          71 VMAVPKIVI-Q-VNGEDRVEFEGAYPEKMFLEKLLSAL  106 (107)
T ss_dssp             CCSSCEEEE-E-ETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred             cccceEEEE-E-eCCeEEEEEECCCCHHHHHHHHHHhh
Confidence            999999855 4 36999999999999999999998876

>d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.23  E-value=3.3e-06  Score=66.68  Aligned_cols=91  Identities=13%  Similarity=0.165  Sum_probs=72.2

Q ss_pred             HhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhc-cCcEEEEEeecCCCCCCCChHHHHHHhhcCCCCCceEEEE
Q 036413          141 VGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIR-ASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVLVI  219 (346)
Q Consensus       141 ~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~-~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~i~ii  219 (346)
                      ...+.+++++|+++.+||..|+.|.      +.+.++.+ -.+..|+.++.+      .  ...++..|++..+|++.++
T Consensus        21 ~~~~~~~~vvv~F~a~wC~~C~~~~------p~l~~l~~~~~~v~~~~vd~d------~--~~~l~~~~~V~~~Pt~~~~   86 (113)
T d1r26a_          21 NIMSEDILTVAWFTAVWCGPCKTIE------RPMEKIAYEFPTVKFAKVDAD------N--NSEIVSKCRVLQLPTFIIA   86 (113)
T ss_dssp             HHHHSSSCEEEEEECTTCHHHHHTH------HHHHHHHHHCTTSEEEEEETT------T--CHHHHHHTTCCSSSEEEEE
T ss_pred             HHHcCCCeEEEEEECCCCccchhhc------eeccccccccccccccccccc------c--chhhHHHccccCCCEEEEE
Confidence            3446789999999999999999883      33444433 136788888877      2  2468999999999999988


Q ss_pred             eCCCCceEEEEeCCCChHHHHHHHHHHHH
Q 036413          220 DPITGEKMRKWCGMVDPVSLLEDLLSFME  248 (346)
Q Consensus       220 dp~tge~l~~~~G~~~~~~~i~~L~~fl~  248 (346)
                      .  .|+.+.++.|. +++.+.+.|.+++.
T Consensus        87 ~--~G~~v~~~~G~-~~~~l~~~l~~~ik  112 (113)
T d1r26a_          87 R--SGKMLGHVIGA-NPGMLRQKLRDIIK  112 (113)
T ss_dssp             E--TTEEEEEEESS-CHHHHHHHHHHHHH
T ss_pred             E--CCEEEEEEeCC-CHHHHHHHHHHHhc
Confidence            5  69999999995 68889999999885

>d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Escherichia coli [TaxId: 562]

Probab=98.05  E-value=7.8e-06  Score=66.55  Aligned_cols=102  Identities=9%  Similarity=0.084  Sum_probs=80.1

Q ss_pred             cccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhc---cCcEEEEEeecCCCCCCCChHHHHHHhh
Q 036413          131 FNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIR---ASNFIFWQVYDDDDDDDDDSECRKVCGY  207 (346)
Q Consensus       131 ~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~---~~nFVfw~~~~~~~~~~~~~eg~~~~~~  207 (346)
                      -.-+|++.+..  ..++.+||++..+||..|..+.      +.+.++.+   ...|.+..++.+        .-..+++.
T Consensus        23 ~~~~~d~~~~~--~~~~vVll~f~a~wCp~C~~~~------pvl~ela~~~~~~~~~~a~Vd~d--------~~~~la~~   86 (132)
T d2hfda1          23 SESRLDDWLTQ--APDGVVLLSSDPKRTPEVSDNP------VMIGELLREFPDYTWQVAIADLE--------QSEAIGDR   86 (132)
T ss_dssp             CHHHHHHHHHH--CSEEEEEECSCCSCCSSSSCCT------HHHHHHHTTCTTSCEEEEEECHH--------HHHHHHHH
T ss_pred             ccccHHHHHHh--CCCcEEEEEeeCCCChhHHHHH------HHHHHHHHHccCCcceeEEEEec--------CCHHHHHh
Confidence            46678877654  4568999999999999998883      55666655   123555555544        45789999


Q ss_pred             cCCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHHcC
Q 036413          208 YKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMESG  250 (346)
Q Consensus       208 y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~~~  250 (346)
                      |++..+|++.++.  .|+.+..+.|..+.+++++.|..+++.-
T Consensus        87 ~~V~~~PT~~~~~--~G~~v~~~~G~~~~~~l~~~i~~ll~~~  127 (132)
T d2hfda1          87 FGVFRFPATLVFT--GGNYRGVLNGIHPWAELINLMRGLVEPQ  127 (132)
T ss_dssp             HTCCSCCEEEEEE--TTEEEEEECCCSCHHHHHHHHHHHHSCS
T ss_pred             hccCcceeEEEEE--cCcEeeeecCCCCHHHHHHHHHHHhCcc
Confidence            9999999999995  6999999999999999999999888653

>d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=98.04  E-value=5.9e-06  Score=63.62  Aligned_cols=93  Identities=18%  Similarity=0.253  Sum_probs=67.1

Q ss_pred             CHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCCCC
Q 036413          134 SFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSL  213 (346)
Q Consensus       134 sf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~  213 (346)
                      .|++++    +++|.++|+++++||..|+.+...+   +.+.+-..  +.+|..++.++        ...++..|++..+
T Consensus        10 ~f~~~i----~~~~~vvv~F~a~wC~~C~~~~~~~---~~l~~~~~--~~~~~~vd~d~--------~~~~~~~~~V~~~   72 (103)
T d1syra_          10 EFDSII----SQNELVIVDFFAEWCGPCKRIAPFY---EECSKTYT--KMVFIKVDVDE--------VSEVTEKENITSM   72 (103)
T ss_dssp             HHHHHH----HHCSEEEEEEECTTCHHHHHHHHHH---HHHHHHCT--TSEEEEEETTT--------THHHHHHTTCCSS
T ss_pred             HHHHHH----hCCCcEEEEEeCCcccCcccccccc---hhhhhccc--ceEEEeecccc--------Ccceeeeeeeecc
Confidence            455555    4689999999999999999996433   22222222  45666676662        2468899999999


Q ss_pred             ceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHHcC
Q 036413          214 PVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMESG  250 (346)
Q Consensus       214 P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~~~  250 (346)
                      |++.++-  .|+.+..+.|. ++    +.|.++++++
T Consensus        73 Pt~i~~k--~G~~v~~~~G~-~~----~~l~~~i~k~  102 (103)
T d1syra_          73 PTFKVYK--NGSSVDTLLGA-ND----SALKQLIEKY  102 (103)
T ss_dssp             SEEEEEE--TTEEEEEEESC-CH----HHHHHHHHTT
T ss_pred             eEEEEEE--CCEEEEEEeCc-CH----HHHHHHHHhh
Confidence            9999995  69999999994 44    4566777665

>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.02  E-value=5.3e-06  Score=66.26  Aligned_cols=100  Identities=10%  Similarity=0.113  Sum_probs=65.9

Q ss_pred             cccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhc---cCcEEEEEeecCCCCCCCChHHHHHHhh
Q 036413          131 FNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIR---ASNFIFWQVYDDDDDDDDDSECRKVCGY  207 (346)
Q Consensus       131 ~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~---~~nFVfw~~~~~~~~~~~~~eg~~~~~~  207 (346)
                      ...+|++.++.+  ..+.+||+++.+||..|..+.      +.+-++.+   ..+|.+..++.+        ....++..
T Consensus        17 ~~~~ld~~~~~~--~~~~vll~f~a~wCp~C~~~~------pvl~eL~~~~~~~~~~~~~Vd~d--------~~~~l~~~   80 (119)
T d2es7a1          17 EASTVDDWIKRV--GDGVILLSSDPRRTPEVSDNP------VMIAELLREFPQFDWQVAVADLE--------QSEAIGDR   80 (119)
T ss_dssp             CCC--------C--CSEEEEECCCSCC----CCHH------HHHHHHHHTCTTSCCEEEEECHH--------HHHHHHHT
T ss_pred             cccCHHHHHHhC--CCcEEEEeecCCCCccHHHHH------HHHHHHHHhcCCCceEEEEEECC--------CCHHHHHh
Confidence            577788877654  558999999999999999883      55555555   125666666544        45789999


Q ss_pred             cCCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHH
Q 036413          208 YKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFME  248 (346)
Q Consensus       208 y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~  248 (346)
                      |++..+|++.++.  .|+.+.++.|..+.+++++.|...|+
T Consensus        81 ~~V~~~Pt~~~~~--~G~~v~~~~G~~~~~~l~~~i~~lLd  119 (119)
T d2es7a1          81 FNVRRFPATLVFT--DGKLRGALSGIHPWAELLTLMRSIVD  119 (119)
T ss_dssp             TTCCSSSEEEEES--CC----CEESCCCHHHHHHHHHHHHC
T ss_pred             cCcCcceEEEEEE--cCeEEEEeeCCCCHHHHHHHHHHHhC
Confidence            9999999999995  69999999999999999999988764

>d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY, DsbE) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Escherichia coli [TaxId: 562]

Probab=98.02  E-value=8.5e-06  Score=65.56  Aligned_cols=97  Identities=18%  Similarity=0.140  Sum_probs=68.7

Q ss_pred             hcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCC-----------------ChHHHHHHh
Q 036413          144 DENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDD-----------------DSECRKVCG  206 (346)
Q Consensus       144 ~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~-----------------~~eg~~~~~  206 (346)
                      .++|++|||+-++||.+|..-      .+.+.++-+ .++.+...+.+. +...                 +++ ..+..
T Consensus        18 ~~Gk~vvl~FwatWC~pC~~e------~p~l~~~~~-~~~~vi~i~~~~-~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~   88 (136)
T d1z5ye1          18 TQGKPVLLNVWATWCPTSRAE------HQYLNQLSA-QGIRVVGMNYKD-DRQKAISWLKELGNPYALSLFDGD-GMLGL   88 (136)
T ss_dssp             HSSSCEEEEEECTTCHHHHHH------HHHHHHHHH-TTCCEEEEEESC-CHHHHHHHHHHHCCCCSEEEEESS-CHHHH
T ss_pred             cCCCEEEEEEEcCcCCCcCcc------ccchhhhhh-hhhhhccccccc-chhhhHHHHHHcCCccceeecccc-hhHHH
Confidence            379999999999999999753      134444444 454444444431 0000                 111 24667


Q ss_pred             hcCCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHHcC
Q 036413          207 YYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMESG  250 (346)
Q Consensus       207 ~y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~~~  250 (346)
                      .|++..+|++.|||+ .|+.+.++.|.++++++.+.|.+.+++.
T Consensus        89 ~~~v~~~P~~~liD~-~G~i~~~~~G~~~~~~l~~~i~~ll~kl  131 (136)
T d1z5ye1          89 DLGVYGAPETFLIDG-NGIIRYRHAGDLNPRVWEEEIKPLWEKY  131 (136)
T ss_dssp             HHTCCSBSEEEEECT-TSCEEEEEESCCCHHHHHHHTHHHHHHH
T ss_pred             hcccCCcceEEEEcC-CCEEEEEEEcCCCHHHHHHHHHHHHHHH
Confidence            788999999999996 6999999999999999888888888764

>d1knga_ c.47.1.10 (A:) Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=98.02  E-value=8.7e-06  Score=66.16  Aligned_cols=102  Identities=21%  Similarity=0.229  Sum_probs=73.3

Q ss_pred             HHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCC-----------------ChHH
Q 036413          139 KDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDD-----------------DSEC  201 (346)
Q Consensus       139 ~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~-----------------~~eg  201 (346)
                      +..+.-++|++|||+-++||..|+...      +.+.++.+..++.++.+.... ..+.                 ++ .
T Consensus        24 ~~~~~~kgK~vll~fwa~wC~~C~~~~------p~l~~l~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~d~-~   95 (144)
T d1knga_          24 LDPAAFKGKVSLVNVWASWCVPCHDEA------PLLTELGKDKRFQLVGINYKD-AADNARRFLGRYGNPFGRVGVDA-N   95 (144)
T ss_dssp             BCGGGGTTSCEEEEEECTTCHHHHHHH------HHHHHHTTCTTSEEEEEEESC-CHHHHHHHHHHHCCCCSEEEEET-T
T ss_pred             cCHHHhCCCEEEEEeeccccccccccC------chhhhhhhccCceeEEEEeee-chHHHHHHHHHcCCccccccccc-c
Confidence            455666789999999999999997663      345555554566666554441 0000                 11 2


Q ss_pred             HHHHhhcCCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHHc
Q 036413          202 RKVCGYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMES  249 (346)
Q Consensus       202 ~~~~~~y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~~  249 (346)
                      .++...|++..+|++.|||+ .|+.+.+..|.++.+++.+.|.+.|+.
T Consensus        96 ~~~~~~~~v~~~P~~~liD~-~G~i~~~~~G~~~~~~l~~~i~~~l~k  142 (144)
T d1knga_          96 GRASIEWGVYGVPETFVVGR-EGTIVYKLVGPITPDNLRSVLLPQMEK  142 (144)
T ss_dssp             SHHHHHTTCCSSCEEEEECT-TSBEEEEEESCCCHHHHHHTHHHHHHH
T ss_pred             chhhhhcCccccceEEEEcC-CCeEEEEEeCCCCHHHHHHHHHHHHHH
Confidence            34667788899999999997 599999999999998888888877764

>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Bacterocin transport accessory protein Bta
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.93  E-value=6.8e-06  Score=64.61  Aligned_cols=93  Identities=8%  Similarity=0.106  Sum_probs=66.0

Q ss_pred             HHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhcc--CcEEEEEeecCCCCCCCChHHHHHHhhcCCCCCce
Q 036413          138 AKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRA--SNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPV  215 (346)
Q Consensus       138 A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~--~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~  215 (346)
                      .+..+...++.++|++..+||..|+.+.      +.+.++..+  ....+  ++++  ..++..+...++..|++..+|+
T Consensus        18 ~~~~~i~~~~~~~v~f~~~~C~~C~~~~------p~l~~~~~~~~~~v~~--v~~~--~~~~~~~~~~~~~~~~V~~~PT   87 (115)
T d1zmaa1          18 RAQEALDKKETATFFIGRKTCPYCRKFA------GTLSGVVAETKAHIYF--INSE--EPSQLNDLQAFRSRYGIPTVPG   87 (115)
T ss_dssp             HHHHHHHTTCCEEEEEECTTCHHHHHHH------HHHHHHHHHHCCCCEE--EETT--CGGGHHHHHHHHHHHTCCSSCE
T ss_pred             HHHHHHhcCCCEEEEEcCCCCccHHHHH------HHHHHHHHHhhhhhhh--heee--cccccccccccccccccccccE
Confidence            4466667899999999999999999995      444444331  33333  3343  1111345567999999999999


Q ss_pred             EEEEeCCCCceEEEEeCCCChHHHHHH
Q 036413          216 VLVIDPITGEKMRKWCGMVDPVSLLED  242 (346)
Q Consensus       216 i~iidp~tge~l~~~~G~~~~~~~i~~  242 (346)
                      +.++.  .|+...++.|..+.+++.+-
T Consensus        88 li~~~--~gk~~~~~~G~~~~~el~~f  112 (115)
T d1zmaa1          88 FVHIT--DGQINVRCDSSMSAQEIKDF  112 (115)
T ss_dssp             EEEEE--TTEEEEECCTTCCHHHHHHH
T ss_pred             EEEEE--CCEEEEEEcCCCCHHHHHHH
Confidence            99997  58888889998887655543

>d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.83  E-value=4.4e-06  Score=65.88  Aligned_cols=97  Identities=14%  Similarity=0.257  Sum_probs=65.4

Q ss_pred             cccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhc--cCcEEEEEeecCCCCCCCChHHHHHHhhc
Q 036413          131 FNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIR--ASNFIFWQVYDDDDDDDDDSECRKVCGYY  208 (346)
Q Consensus       131 ~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~--~~nFVfw~~~~~~~~~~~~~eg~~~~~~y  208 (346)
                      -.-+|+++++    .+|.+||+++++||..|+.|-.. |  ..+.+.++  ..++++..++.+      .  ...++..|
T Consensus        13 ~~~~f~~~l~----~~k~vlV~Fya~wC~~C~~~~p~-~--~~~~~~~~~~~~~v~~~~vd~~------~--~~~l~~~~   77 (120)
T d1meka_          13 RKSNFAEALA----AHKYLLVEFYAPWCGHCKALAPE-Y--AKAAGKLKAEGSEIRLAKVDAT------E--ESDLAQQY   77 (120)
T ss_dssp             CTTTHHHHHH----HCSEEEEEEECSSCSTTSTTHHH-H--HHHHHTTTTTCCCCBCEEEETT------T--CCSSHHHH
T ss_pred             CHHHHHHHHh----cCCcEEEEEECCCcCCccccchh-h--hhhcccccccccceeeeccccc------c--chhHHHHh
Confidence            4567888774    47899999999999999987322 2  12333333  134667777766      2  24688899


Q ss_pred             CCCCCceEEEEeCCCCceE--EEEeCCCChHHHHHHHH
Q 036413          209 KLDSLPVVLVIDPITGEKM--RKWCGMVDPVSLLEDLL  244 (346)
Q Consensus       209 ~~~~~P~i~iidp~tge~l--~~~~G~~~~~~~i~~L~  244 (346)
                      ++..||++.++..  |+..  ....|..+.++|++-|.
T Consensus        78 ~i~~~Pt~~~~~~--G~~~~~~~~~g~~~~~~l~~fi~  113 (120)
T d1meka_          78 GVRGYPTIKFFRN--GDTASPKEYTAGREADDIVNWLK  113 (120)
T ss_dssp             TCCSSSEEEEEES--SCSSSCEECCCCSSHHHHHHHHH
T ss_pred             CCccCCeEEEEEC--CeEeeeEEecCCCCHHHHHHHHH
Confidence            9999999998864  5433  44578777765554443

>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MJ0307, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.83  E-value=1.1e-05  Score=59.73  Aligned_cols=83  Identities=17%  Similarity=0.123  Sum_probs=60.5

Q ss_pred             CcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCCCCceEEEEeCCCCc
Q 036413          146 NKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVLVIDPITGE  225 (346)
Q Consensus       146 ~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~i~iidp~tge  225 (346)
                      +|..+++++++||..|+.+...+   +.+.+-.+ ....+...+.+        +...+++.|++.++|++. |+ ..|+
T Consensus         2 ~kv~v~~F~a~wC~~C~~~~p~~---~~~~~~~~-~~~~~~~~~~d--------~~~~la~~~~V~~~Pt~~-i~-~~g~   67 (85)
T d1fo5a_           2 SKVKIELFTSPMCPHCPAAKRVV---EEVANEMP-DAVEVEYINVM--------ENPQKAMEYGIMAVPTIV-IN-GDVE   67 (85)
T ss_dssp             CCEEEEEEECCCSSCCCTHHHHH---HHHHHHCS-SSEEEEEEESS--------SSCCTTTSTTTCCSSEEE-ET-TEEE
T ss_pred             CceEEEEEECCCCcChHhhhhhc---cccccccc-ccccccccccc--------ccccccccCCceEeeEEE-EE-CCcE
Confidence            47789999999999999996433   34445555 56777776655        235588899999999985 45 2354


Q ss_pred             eEEEEeCCCChHHHHHHHHHH
Q 036413          226 KMRKWCGMVDPVSLLEDLLSF  246 (346)
Q Consensus       226 ~l~~~~G~~~~~~~i~~L~~f  246 (346)
                          +.|..+.+++++.|.+.
T Consensus        68 ----~~G~~~~~~l~~~i~~~   84 (85)
T d1fo5a_          68 ----FIGAPTKEALVEAIKKR   84 (85)
T ss_dssp             ----CCSSSSSHHHHHHHHHH
T ss_pred             ----EECCCCHHHHHHHHHhc
Confidence                56988888888877765

>d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.78  E-value=5.3e-05  Score=59.65  Aligned_cols=99  Identities=10%  Similarity=0.208  Sum_probs=71.0

Q ss_pred             ccccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcC
Q 036413          130 MFNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYK  209 (346)
Q Consensus       130 ~~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~  209 (346)
                      +-..+|++.+    +++|.+||+++++||..|+.|.. +|  +.+.+.++..++.|..++.+      .  ...++..|+
T Consensus        15 lt~~~f~~~i----~~~~~~lV~fya~wC~~C~~~~~-~~--~~la~~~~~~~v~~~~vd~~------~--~~~l~~~~~   79 (119)
T d2b5ea4          15 LATDSFNEYI----QSHDLVLAEFFAPWCGHCKNMAP-EY--VKAAETLVEKNITLAQIDCT------E--NQDLCMEHN   79 (119)
T ss_dssp             CCTTTHHHHH----TTCSEEEEEEECTTCHHHHHHHH-HH--HHHHHHTTTTTCEEEEEETT------T--CHHHHHHTT
T ss_pred             cCHHHHHHHH----hcCCeEEEEEECCccCcccccch-hh--hhhhhhhcccceeeeeeecc------c--hHHHHHHhc
Confidence            4567788776    35788999999999999999964 33  44444444256777788777      3  357899999


Q ss_pred             CCCCceEEEEeCCCCceEE--EEeCCCChHHHHHHHHH
Q 036413          210 LDSLPVVLVIDPITGEKMR--KWCGMVDPVSLLEDLLS  245 (346)
Q Consensus       210 ~~~~P~i~iidp~tge~l~--~~~G~~~~~~~i~~L~~  245 (346)
                      +..||+|.++-  .|+...  ...|..+.++|++-|.+
T Consensus        80 v~~~Pti~~f~--~g~~~~~~~y~g~~~~~~l~~fi~k  115 (119)
T d2b5ea4          80 IPGFPSLKIFK--NSDVNNSIDYEGPRTAEAIVQFMIK  115 (119)
T ss_dssp             CCSSSEEEEEE--TTCTTCEEECCSCCSHHHHHHHHHH
T ss_pred             cccCCeEEEEE--CCEEeeeEEecCCCCHHHHHHHHHH
Confidence            99999999983  465443  34687787776665554

>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: spliceosomal protein U5-15Kd
domain: spliceosomal protein U5-15Kd
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.74  E-value=4.9e-05  Score=62.06  Aligned_cols=101  Identities=8%  Similarity=0.054  Sum_probs=74.6

Q ss_pred             ccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCC
Q 036413          132 NGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLD  211 (346)
Q Consensus       132 ~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~  211 (346)
                      ...+++|+..+  ++|.++|++..+||..|+.|..-+   +.+.+-+. ++++|..+|+++     .   ..+++.|++.
T Consensus        10 ~~~~dq~i~~~--~~k~vvv~F~a~wC~~C~~~~p~l---~~la~~~~-~~v~~~~VDvd~-----~---~~la~~~~I~   75 (137)
T d1qgva_          10 GWQVDQAILSE--EDRVVVIRFGHDWDPTCMKMDEVL---YSIAEKVK-NFAVIYLVDITE-----V---PDFNKMYELY   75 (137)
T ss_dssp             HHHHHHHHHTC--SSSEEEEEEECTTSHHHHHHHHHH---HHHHHHHT-TTEEEEEEETTT-----C---CTTTTSSCSC
T ss_pred             HHHHHHHHHhC--CCCEEEEEEECCCCccchhcChHH---HHHHHHhh-ccceEEEeeccc-----c---chhhhhcCee
Confidence            44678877653  589999999999999999995322   34444456 779999999883     2   3689999999


Q ss_pred             CCceEEEEeCCCCceEEEEe---------CC-CChHHHHHHHHHHHH
Q 036413          212 SLPVVLVIDPITGEKMRKWC---------GM-VDPVSLLEDLLSFME  248 (346)
Q Consensus       212 ~~P~i~iidp~tge~l~~~~---------G~-~~~~~~i~~L~~fl~  248 (346)
                      ++|++.+..  .|+.+..-.         |. .+.++|++.+.....
T Consensus        76 ~~PT~~~f~--~g~~i~~~~g~~~~~k~~~~l~~~~~~i~~ie~i~~  120 (137)
T d1qgva_          76 DPCTVMFFF--RNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETVYR  120 (137)
T ss_dssp             SSCEEEEEE--TTEEEEEECC------CCSCCSCHHHHHHHHHHHHH
T ss_pred             eEEEEEEEe--CCcEEEEEecCCCcceeeeehhhhHHHHHHHHHHHH
Confidence            999999996  577775433         32 366777777766543

>d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Txnl5-like
domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.58  E-value=6.7e-05  Score=59.50  Aligned_cols=76  Identities=11%  Similarity=0.094  Sum_probs=57.2

Q ss_pred             hcCcEEEEEecCC-------CCccccccccccCCCHHHHHHhc--cCcEEEEEeecCCCCCCCChH----HHHHHhhcCC
Q 036413          144 DENKWLLVNLQSP-------KEFTSHTLNRDTWADEAVSQTIR--ASNFIFWQVYDDDDDDDDDSE----CRKVCGYYKL  210 (346)
Q Consensus       144 ~~~K~LlV~l~~~-------~~f~c~~lnRdvw~~~~V~~~i~--~~nFVfw~~~~~~~~~~~~~e----g~~~~~~y~~  210 (346)
                      .++|.++|++.++       ||.+|..+.      |.+.++.+  ..++.|..+++++     .++    ...+++.|++
T Consensus        19 ~~gk~v~v~F~a~~~~~g~sWC~pCk~~~------P~~~~l~~~~~~~~~~~~vdv~~-----~~~~~d~~~~l~~~~~V   87 (119)
T d1woua_          19 HNGKTIFAYFTGSKDAGGKSWCPDCVQAE------PVVREGLKHISEGCVFIYCQVGE-----KPYWKDPNNDFRKNLKV   87 (119)
T ss_dssp             TTTSEEEEEEECCBCTTCCBSCHHHHHHH------HHHHHHGGGCCTTEEEEEEECCC-----HHHHHCTTCHHHHHHCC
T ss_pred             cCCCEEEEEEEecCCCCCCCCChhHHHHH------HHHHHHHHhcCCceEEEEEECCC-----CcccchhhhhHHHhCCe
Confidence            4689999999884       999999995      55555543  2689999999972     222    2458889999


Q ss_pred             CCCceEEEEeCCCCceEEEEeC
Q 036413          211 DSLPVVLVIDPITGEKMRKWCG  232 (346)
Q Consensus       211 ~~~P~i~iidp~tge~l~~~~G  232 (346)
                      ..+|++.+++  .|+++...++
T Consensus        88 ~~iPT~i~~~--~g~~l~~~~~  107 (119)
T d1woua_          88 TAVPTLLKYG--TPQKLVESEC  107 (119)
T ss_dssp             CSSSEEEETT--SSCEEEGGGG
T ss_pred             EEEEEEEEEE--CCeEEeeeec
Confidence            9999999997  4777654333

>d1st9a_ c.47.1.10 (A:) Thiol-disulfide oxidoreductase ResA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol-disulfide oxidoreductase ResA
species: Bacillus subtilis [TaxId: 1423]

Probab=97.57  E-value=0.00015  Score=57.95  Aligned_cols=96  Identities=14%  Similarity=0.136  Sum_probs=62.8

Q ss_pred             hcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCC---------------ChHHHHHHhhc
Q 036413          144 DENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDD---------------DSECRKVCGYY  208 (346)
Q Consensus       144 ~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~---------------~~eg~~~~~~y  208 (346)
                      -++|+++|++.+++|..|+.....+  +....++-+ .++.+..++.++ +.++               ......++..|
T Consensus        23 ~~gk~~li~f~~~~C~~C~~~~~~l--~~~~~~~~~-~~~~~v~i~~~~-~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~   98 (137)
T d1st9a_          23 LKGKGVFLNFWGTWCEPCKKEFPYM--ANQYKHFKS-QGVEIVAVNVGE-SKIAVHNFMKSYGVNFPVVLDTDRQVLDAY   98 (137)
T ss_dssp             GTTSEEEEEEECTTCHHHHHHHHHH--HHHHHHHGG-GTEEEEEEEESC-CHHHHHHHHHHTTCCSCEEEETTSHHHHHT
T ss_pred             hCCCEEEEEEeeccccceeeccccc--ccccccccc-cccccccccccc-hhhhHHHHHHHcCCCccccccccchhhhhh
Confidence            3689999999999999997664332  112223333 667777776552 1000               00123456777


Q ss_pred             CCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHH
Q 036413          209 KLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLS  245 (346)
Q Consensus       209 ~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~  245 (346)
                      ++..+|++.|||+ .|+.+..+.|.++.+.+ +.+.+
T Consensus        99 ~v~~~P~~~liD~-~G~i~~~~~G~~~~~~~-~~~l~  133 (137)
T d1st9a_          99 DVSPLPTTFLINP-EGKVVKVVTGTMTESMI-HDYMN  133 (137)
T ss_dssp             TCCSSCEEEEECT-TSEEEEEEESCCCHHHH-HHHHH
T ss_pred             hccccceEEEECC-CCEEEEEEECCCCHHHH-HHHHH
Confidence            7889999999997 69999999998886554 43333

>d2g3qa1 a.5.2.1 (A:1339-1381) Endocytic protein Ede1, YBL047C {Saccharomyces cerevisiae [TaxId: 4932]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Endocytic protein Ede1, YBL047C
species: Saccharomyces cerevisiae [TaxId: 4932]

Probab=97.56  E-value=6.2e-05  Score=48.65  Aligned_cols=39  Identities=26%  Similarity=0.412  Sum_probs=34.9

Q ss_pred             HHHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhhc
Q 036413           10 RKRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNNN   50 (346)
Q Consensus        10 ~~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~~   50 (346)
                      ....|++.+++  |=++++|+.-|+.|||||+.|++.-+++
T Consensus         4 k~~ai~eL~~M--GF~e~~A~~AL~k~~wnleaAtN~LLd~   42 (43)
T d2g3qa1           4 KSLAVEELSGM--GFTEEEAHNALEKCNWDLEAATNFLLDS   42 (43)
T ss_dssp             HHHHHHHHHTT--TSCHHHHHHHHHHHTSCHHHHHHHHHTC
T ss_pred             HHHHHHHHHhc--CCCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence            35788999999  9999999999999999999999987763

>d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein TlpA, soluble domain {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Membrane-anchored thioredoxin-like protein TlpA, soluble domain
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=97.49  E-value=0.00028  Score=58.78  Aligned_cols=99  Identities=18%  Similarity=0.162  Sum_probs=60.1

Q ss_pred             hcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCC--------------------ChHHHH
Q 036413          144 DENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDD--------------------DSECRK  203 (346)
Q Consensus       144 ~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~--------------------~~eg~~  203 (346)
                      -++|++||++..+||..|+.....+  +....++-. .++.+..+.++..+.++                    ..-...
T Consensus        54 ~kGK~vll~F~a~wC~~C~~~~~~l--~~~~~~~~~-~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  130 (176)
T d1jfua_          54 FRGKTLLVNLWATWCVPCRKEMPAL--DELQGKLSG-PNFEVVAINIDTRDPEKPKTFLKEANLTRLGYFNDQKAKVFQD  130 (176)
T ss_dssp             GTTSEEEEEEECTTCHHHHHHHHHH--HHHHHHHCB-TTEEEEEEECCCSCTTHHHHHHHHTTCCTTCCEECTTCHHHHH
T ss_pred             hCCCEEEEEeccCcccchHHHHHhh--hhccccccc-cccccccccccccchhhhhhhHhhhCCcceeeeecchhHHHHH
Confidence            3678888998888888886654333  122223333 44433334333100000                    223344


Q ss_pred             HHhhcCCCCCceEEEEeCCCCceEEEEeCCC--ChHHHHHHHHHH
Q 036413          204 VCGYYKLDSLPVVLVIDPITGEKMRKWCGMV--DPVSLLEDLLSF  246 (346)
Q Consensus       204 ~~~~y~~~~~P~i~iidp~tge~l~~~~G~~--~~~~~i~~L~~f  246 (346)
                      +...|++..+|+..|||. .|..+.++.|.+  +.+++++.|+..
T Consensus       131 ~~~~~~v~~~P~~~lID~-~G~I~~~~~G~~~~~~~e~~~~l~al  174 (176)
T d1jfua_         131 LKAIGRALGMPTSVLVDP-QGCEIATIAGPAEWASEDALKLIRAA  174 (176)
T ss_dssp             HHTTTCCSSSSEEEEECT-TSBEEEEEESCCCTTSHHHHHHHHHH
T ss_pred             HhhhccCCCCCeEEEEcC-CCEEEEEEECCCCCChHHHHHHHHHh
Confidence            556677778999999995 699999999965  446677776654

>d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain
species: Neisseria meningitidis serogroup A [TaxId: 65699]

Probab=97.46  E-value=8.1e-05  Score=59.79  Aligned_cols=97  Identities=11%  Similarity=0.019  Sum_probs=61.6

Q ss_pred             hhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhc---cCcEEEEEeecCCCCCCC-C-------------------
Q 036413          142 GSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIR---ASNFIFWQVYDDDDDDDD-D-------------------  198 (346)
Q Consensus       142 Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~---~~nFVfw~~~~~~~~~~~-~-------------------  198 (346)
                      ...++|.++|++-++||..|+...      +.+.++.+   ..++.+..+......... .                   
T Consensus        19 ~~~~gk~vvl~F~a~wC~~C~~~~------~~l~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (143)
T d2fy6a1          19 YLKKDKPTLIKFWASWCPLCLSEL------GQTEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLNYPKLPVVT   92 (143)
T ss_dssp             GCCTTSCEEEEEECTTCHHHHTTH------HHHHHHHHCGGGTTSEEEEEECTTSTTCCCTTHHHHHHTTSCCTTSCEEE
T ss_pred             HHhCCCEEEEEEECCCCccccccC------cchhhhhhhhccCCcEEEEEeeeecccccchhhhhhhhhhcCCccccccc
Confidence            445678899999899999887531      23333322   133444444332100000 0                   


Q ss_pred             hHHHHHHhhcCCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHH
Q 036413          199 SECRKVCGYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLS  245 (346)
Q Consensus       199 ~eg~~~~~~y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~  245 (346)
                      .....++..|++..+|++.|||+ .|+.+.+..|.++.+++...|++
T Consensus        93 D~~~~~~~~~~v~~~P~~~liD~-~G~i~~~~~G~~~~~~~~~~l~~  138 (143)
T d2fy6a1          93 DNGGTIAQSLNISVYPSWALIGK-DGDVQRIVKGSINEAQALALIRD  138 (143)
T ss_dssp             CTTCHHHHHTTCCSSSEEEEECT-TSCEEEEEESCCCHHHHHHHHHC
T ss_pred             ccchHHHHHcCCCccCEEEEECC-CCEEEEEEECCCCHHHHHHHHHH
Confidence            01235778899999999999996 69988889999998776666653

>d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: thiol:disulfide oxidoreductase YkuV
species: Bacillus subtilis [TaxId: 1423]

Probab=97.40  E-value=0.00059  Score=54.79  Aligned_cols=99  Identities=15%  Similarity=0.045  Sum_probs=60.7

Q ss_pred             HHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhc--cCcEEEEEeecCCCCCCCChH-----------------
Q 036413          140 DVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIR--ASNFIFWQVYDDDDDDDDDSE-----------------  200 (346)
Q Consensus       140 ~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~--~~nFVfw~~~~~~~~~~~~~e-----------------  200 (346)
                      ..+...+|.++|++-++||..|+..-      +.+.++.+  .+...+..++.+..+.+...+                 
T Consensus        23 ~~~~~~~k~vvl~f~a~~C~~C~~~~------p~l~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~   96 (143)
T d2b5xa1          23 REQLIGEKPTLIHFWSISCHLCKEAM------PQVNEFRDKYQDQLNVVAVHMPRSEDDLDPGKIKETAAEHDITQPIFV   96 (143)
T ss_dssp             HHHHTTTSCEEEEEECTTCHHHHHHH------HHHHHHHHHHTTTSEEEEEECCCSTTTSSHHHHHHHHHHTTCCSCEEE
T ss_pred             cHHHhCCCEEEEEEEcCCCcchhhhh------hhhhhhhhhhhccccceeEEeeccccccchhhhhhHHHhhccCccccc
Confidence            34455678888888888888886542      22322222  134444444433111111111                 


Q ss_pred             --HHHHHhhcCCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHH
Q 036413          201 --CRKVCGYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLS  245 (346)
Q Consensus       201 --g~~~~~~y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~  245 (346)
                        ...++..|++..+|++.|||+ .|..+....|..+.+.+.+.|.+
T Consensus        97 D~~~~~~~~~~v~~~P~~~~id~-~G~i~~~~~G~~~~~~l~~~l~~  142 (143)
T d2b5xa1          97 DSDHALTDAFENEYVPAYYVFDK-TGQLRHFQAGGSGMKMLEKRVNR  142 (143)
T ss_dssp             CSSCHHHHHTCCCCSSEEEEECT-TCBEEEEEESCSTTHHHHHHHHH
T ss_pred             cCccchHHHcCCCcCCEEEEECC-CCEEEEEEECCCCHHHHHHHHHh
Confidence              123556778889999999997 69999889998887766666543

>d1oaia_ a.5.2.3 (A:) FG-binding, C-terminal domain of TAP {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: TAP-C domain-like
domain: FG-binding, C-terminal domain of TAP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.39  E-value=8.8e-05  Score=51.99  Aligned_cols=41  Identities=20%  Similarity=0.437  Sum_probs=39.2

Q ss_pred             hhHHHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhh
Q 036413            8 KQRKRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNN   49 (346)
Q Consensus         8 ~~~~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~   49 (346)
                      ++|.++|..|+.. ||-+.+-++.+|+.+|||++.|+..|-+
T Consensus         5 ~~Qq~mv~~~s~~-T~mn~e~s~~cLe~~~Wd~~~A~~~F~~   45 (59)
T d1oaia_           5 PEQQEMLQAFSTQ-SGMNLEWSQKCLQDNNWDYTRSAQAFTH   45 (59)
T ss_dssp             HHHHHHHHHHHHH-HCCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH-HCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence            6789999999999 9999999999999999999999999975

>d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=97.39  E-value=0.0003  Score=55.49  Aligned_cols=104  Identities=16%  Similarity=0.138  Sum_probs=72.6

Q ss_pred             ccccCHHHHHHHhhhcCcEEEEEecCCCCcccccc--ccccC-CCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHh
Q 036413          130 MFNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTL--NRDTW-ADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCG  206 (346)
Q Consensus       130 ~~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~l--nRdvw-~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~  206 (346)
                      +-..+|+++++    +.+++||.++.+||..|..+  |.... .-+.+...++..++.|-.++.+      ..  ..++.
T Consensus        16 L~~~nf~~~l~----~~~~~~V~FyapwC~~~~~~~~~~~~~~~~~~~a~~~~~~~v~~a~Vd~~------~~--~~l~~   83 (124)
T d1a8ya1          16 VNAKNYKNVFK----KYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSE------KD--AAVAK   83 (124)
T ss_dssp             CCTTTHHHHHH----HCSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEETT------TS--HHHHH
T ss_pred             CCHHHHHHHHH----hCCeEEEEEECCCccchhhhhHHHHHHHHHHHHHHHhccCCeEEEEEEee------cc--cchhh
Confidence            34667888874    46789999999999865321  11110 0123333444245888888877      22  56899


Q ss_pred             hcCCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHH
Q 036413          207 YYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFME  248 (346)
Q Consensus       207 ~y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~  248 (346)
                      .|++..||+|.++.  .|+.+ ...|..+.+.|++-|.+.++
T Consensus        84 ~~~I~~yPTi~~f~--~g~~~-~y~G~r~~~~l~~fi~~~l~  122 (124)
T d1a8ya1          84 KLGLTEEDSIYVFK--EDEVI-EYDGEFSADTLVEFLLDVLE  122 (124)
T ss_dssp             TTTCCSTTCEEEEE--SSSEE-ECCSCCSHHHHHHHHHHHHS
T ss_pred             ccccccCCcEEEec--cCccE-EeeCCCCHHHHHHHHHHhcC
Confidence            99999999999887  37654 57899999999998888775

>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH807, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.28  E-value=0.00028  Score=52.07  Aligned_cols=80  Identities=14%  Similarity=0.113  Sum_probs=58.4

Q ss_pred             EEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCCCCceEEEEeCCCCceEEE
Q 036413          150 LVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVLVIDPITGEKMRK  229 (346)
Q Consensus       150 lV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~i~iidp~tge~l~~  229 (346)
                      ++.++++||..|+.+...+   +.+.+-.+ .++.+..++.+        +...++..|++..+|++.+ +   |+.  +
T Consensus         5 v~~F~a~wC~~C~~~~p~~---~~l~~~~~-~~v~~~~vd~d--------~~~~l~~~~~V~~~Pt~~~-~---~~~--~   66 (85)
T d1nhoa_           5 IEVFTSPTCPYCPMAIEVV---DEAKKEFG-DKIDVEKIDIM--------VDREKAIEYGLMAVPAIAI-N---GVV--R   66 (85)
T ss_dssp             EEEESCSSSCCSTTHHHHH---HHHHHHHC-SSCCEEEECTT--------TCGGGGGGTCSSCSSEEEE-T---TTE--E
T ss_pred             EEEEECCCCcchHHHHHHH---hhhccccc-ccccccccccc--------cchhhHHhcCceEeCEEEE-C---CcE--E
Confidence            3447999999999995433   44444456 77888877766        3467899999999999754 4   332  3


Q ss_pred             EeCCCChHHHHHHHHHHH
Q 036413          230 WCGMVDPVSLLEDLLSFM  247 (346)
Q Consensus       230 ~~G~~~~~~~i~~L~~fl  247 (346)
                      ..|..+++.|.+.|.+.|
T Consensus        67 ~~G~~~~~~l~~~i~~~l   84 (85)
T d1nhoa_          67 FVGAPSREELFEAINDEM   84 (85)
T ss_dssp             EECSSCCHHHHHHHHHHC
T ss_pred             EEcCCCHHHHHHHHHHhh
Confidence            579889998888887754

>d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.19  E-value=0.00088  Score=50.59  Aligned_cols=81  Identities=6%  Similarity=0.100  Sum_probs=58.2

Q ss_pred             cCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCCCCceEEEEeCCCC
Q 036413          145 ENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVLVIDPITG  224 (346)
Q Consensus       145 ~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~i~iidp~tg  224 (346)
                      ++.+.++.++++||..|+.+-.-+   +.+. -.+ .+..|..++.+        +...++..|++.++|++. +   .|
T Consensus        14 ~~~~~i~~F~s~~C~~C~~~~p~~---~~~a-~~~-~~i~~~~vd~~--------~~~~l~~~~~I~~vPt~~-~---ng   76 (96)
T d1hyua4          14 DGDFEFETYYSLSCHNCPDVVQAL---NLMA-VLN-PRIKHTAIDGG--------TFQNEITERNVMGVPAVF-V---NG   76 (96)
T ss_dssp             CSCEEEEEEECTTCSSHHHHHHHH---HHHH-HHC-TTEEEEEEETT--------TCHHHHHHTTCCSSSEEE-E---TT
T ss_pred             CCCeEEEEEECCCCcchHHHHHHH---HHHH-HhC-CceEEEEEecc--------cchHHHhhcccccccEEE-E---CC
Confidence            466778889999999998884322   1222 234 57888877766        236789999999999984 4   47


Q ss_pred             ceEEEEeCCCChHHHHHHHH
Q 036413          225 EKMRKWCGMVDPVSLLEDLL  244 (346)
Q Consensus       225 e~l~~~~G~~~~~~~i~~L~  244 (346)
                      +.+  ..|..+.++|++.|.
T Consensus        77 ~~~--~~G~~~~~~l~~~le   94 (96)
T d1hyua4          77 KEF--GQGRMTLTEIVAKVD   94 (96)
T ss_dssp             EEE--EESCCCHHHHHHHHC
T ss_pred             EEE--EecCCCHHHHHHHHh
Confidence            765  569889888777653

>d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.09  E-value=0.0002  Score=57.70  Aligned_cols=98  Identities=15%  Similarity=0.198  Sum_probs=64.9

Q ss_pred             ccccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhc--cCcEEEEEeecCCCCCCCChHHHHHHhh
Q 036413          130 MFNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIR--ASNFIFWQVYDDDDDDDDDSECRKVCGY  207 (346)
Q Consensus       130 ~~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~--~~nFVfw~~~~~~~~~~~~~eg~~~~~~  207 (346)
                      +-.-+|++.+.   ..+|.+||+++++||..|+.|- -+|.  .+.+.++  ...+.+.-++..          ..++..
T Consensus        17 l~~~nf~~~v~---~~~k~vlV~F~a~wC~~C~~~~-p~~~--~la~~~~~~~~~v~~~~~d~~----------~~~~~~   80 (140)
T d2b5ea1          17 LVGKNHDEIVN---DPKKDVLVLYYAPWCGHCKRLA-PTYQ--ELADTYANATSDVLIAKLDHT----------ENDVRG   80 (140)
T ss_dssp             ECTTTHHHHHH---CTTCCEEEEEECTTCHHHHHHH-HHHH--HHHHHHHHHCSSCEEEEEEGG----------GCCCSS
T ss_pred             ecCcCHHHHHh---cCCCCEEEEEEeccCcccchhH-HHHH--HHHHHHhccccceEEEeeecc----------chhccc
Confidence            45667988875   3468899999999999999994 3443  2333322  023444444433          246788


Q ss_pred             cCCCCCceEEEEeCCCCceEEE--EeCCCChHHHHHHHHH
Q 036413          208 YKLDSLPVVLVIDPITGEKMRK--WCGMVDPVSLLEDLLS  245 (346)
Q Consensus       208 y~~~~~P~i~iidp~tge~l~~--~~G~~~~~~~i~~L~~  245 (346)
                      |++.+||++.++.  .|+....  ..|..+.+.|++-|.+
T Consensus        81 ~~v~~~Ptl~~f~--~g~~~~~~~y~G~~t~~~l~~fi~~  118 (140)
T d2b5ea1          81 VVIEGYPTIVLYP--GGKKSESVVYQGSRSLDSLFDFIKE  118 (140)
T ss_dssp             CCCSSSSEEEEEC--CTTSCCCCBCCSCCCHHHHHHHHHH
T ss_pred             cccccCCeEEEEE--CCEEcceeEeCCCCCHHHHHHHHHH
Confidence            9999999999986  3655433  4688887666555443

>d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Windbeutel, N-terminal domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.03  E-value=0.0022  Score=50.20  Aligned_cols=102  Identities=13%  Similarity=0.145  Sum_probs=65.4

Q ss_pred             cccCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHH-HHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcC
Q 036413          131 FNGSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAV-SQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYK  209 (346)
Q Consensus       131 ~~gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V-~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~  209 (346)
                      -..+|++.+    .+.|++||+++.+||..|+.   ..|..-.- ..-.. .++++-.++.+.++   ..+...++..|+
T Consensus         8 ~~~nFd~~v----~~~~~~lV~Fya~wC~~ck~---p~f~kla~~~~~~~-~~v~ia~Vd~~~~~---~~~n~~l~~~~~   76 (122)
T d2c0ga2           8 DELSFEKTV----ERFPYSVVKFDIASPYGEKH---EAFTAFSKSAHKAT-KDLLIATVGVKDYG---ELENKALGDRYK   76 (122)
T ss_dssp             CTTTHHHHH----TTSSEEEEEEEESSCCSHHH---HHHHHHHHHHHHHC-SSEEEEEEEECSST---TCTTHHHHHHTT
T ss_pred             ChHhHHHHH----hcCCcEEEEEECCCCCcccC---HHHHHHHHHHHHhC-CCeEEEeccccccc---cccCHHHHHHhh
Confidence            355787777    45699999999999999972   33322110 01123 67888888887211   345678999998


Q ss_pred             C--CCCceEEEEeCCCCceEE--EEeCCCChHHHHHHHH
Q 036413          210 L--DSLPVVLVIDPITGEKMR--KWCGMVDPVSLLEDLL  244 (346)
Q Consensus       210 ~--~~~P~i~iidp~tge~l~--~~~G~~~~~~~i~~L~  244 (346)
                      +  ..||+|.++.+- +....  ...|..+.+.|++-|.
T Consensus        77 i~~~~~PTi~~f~~g-~~~~~~~~~~g~rt~~~l~~fv~  114 (122)
T d2c0ga2          77 VDDKNFPSIFLFKGN-ADEYVQLPSHVDVTLDNLKAFVS  114 (122)
T ss_dssp             CCTTSCCEEEEESSS-SSSEEECCTTSCCCHHHHHHHHH
T ss_pred             cccCCCCcEEEEeCC-cccccccccCCCCCHHHHHHHHH
Confidence            8  479999999853 22222  2456667655444443

>d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Soluble secreted antigen MPT53
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.96  E-value=0.00092  Score=53.06  Aligned_cols=92  Identities=12%  Similarity=0.081  Sum_probs=57.1

Q ss_pred             cCcEEEEEecCCCCccccccccccCCCHHHHHHhc-cCcEEEEEeecCCCCCCC----------------ChHHHHHHhh
Q 036413          145 ENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIR-ASNFIFWQVYDDDDDDDD----------------DSECRKVCGY  207 (346)
Q Consensus       145 ~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~-~~nFVfw~~~~~~~~~~~----------------~~eg~~~~~~  207 (346)
                      ++|++||++-++||..|+...      +.+.++.+ ..+..+..++.++ +...                +++ ..++..
T Consensus        23 ~Gk~vll~F~a~wC~~C~~~~------p~l~~~~~~~~~v~~v~v~~~~-~~~~~~~~~~~~~~~~p~~~d~~-~~~~~~   94 (134)
T d1lu4a_          23 QGKPAVLWFWTPWCPFCNAEA------PSLSQVAAANPAVTFVGIATRA-DVGAMQSFVSKYNLNFTNLNDAD-GVIWAR   94 (134)
T ss_dssp             TTSCEEEEEECTTCHHHHHHH------HHHHHHHHHCTTSEEEEEECSS-CHHHHHHHHHHHTCCSEEEECTT-SHHHHH
T ss_pred             CCCEEEEEEeecccCCceecc------hhHHHHhhhhcccccccccccc-chhhhhhhhhhhccccceeeCch-HHHHHH
Confidence            588999999999999997642      22222221 1234444443331 0000                111 236677


Q ss_pred             cCCCCCceEEEEeCCCCceEEE--EeCCCChHHHHHHHHH
Q 036413          208 YKLDSLPVVLVIDPITGEKMRK--WCGMVDPVSLLEDLLS  245 (346)
Q Consensus       208 y~~~~~P~i~iidp~tge~l~~--~~G~~~~~~~i~~L~~  245 (346)
                      |++..+|++.|||+ .|+...+  ..|..+.+++.+.|.+
T Consensus        95 ~~v~~~P~~~lid~-~G~i~~v~~~~g~~~~~~l~~~l~~  133 (134)
T d1lu4a_          95 YNVPWQPAFVFYRA-DGTSTFVNNPTAAMSQDELSGRVAA  133 (134)
T ss_dssp             TTCCSSSEEEEECT-TSCEEEECCSSSCCCHHHHHHHHHH
T ss_pred             cCCCcCCEEEEEeC-CCeEEEEeccCCCCCHHHHHHHHHc
Confidence            88899999999996 5875443  3567888888888754

>d1zzoa1 c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Lipoprotein DsbF
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.92  E-value=0.0018  Score=51.02  Aligned_cols=92  Identities=17%  Similarity=0.115  Sum_probs=56.3

Q ss_pred             hcCcEEEEEecCCCCccccccccccCCCHHHHHHhc-cCcEEEEEeecCCCCCCC-----------------ChHHHHHH
Q 036413          144 DENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIR-ASNFIFWQVYDDDDDDDD-----------------DSECRKVC  205 (346)
Q Consensus       144 ~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~-~~nFVfw~~~~~~~~~~~-----------------~~eg~~~~  205 (346)
                      -++|++||++-++||..|+...      +.+.++.+ ..+..+..+...+ +...                 +. ...+.
T Consensus        23 ~~Gk~vll~fwa~wC~~C~~~~------p~l~~l~~~~~~~~~v~v~~~d-~~~~~~~~~~~~~~~~~~~l~D~-~~~~~   94 (134)
T d1zzoa1          23 LLGKPAVLWFWAPWCPTCQGEA------PVVGQVAASHPEVTFVGVAGLD-QVPAMQEFVNKYPVKTFTQLADT-DGSVW   94 (134)
T ss_dssp             GTTSCEEEEEECTTCHHHHHHH------HHHHHHHHHCTTSEEEEEECSS-CHHHHHHHHHHTTCTTSEEEECT-TCHHH
T ss_pred             hCCCEEEEEecccccCcccccc------hhhHHHHhhhcccccccccccc-cchhHHHHHHhcCCcceeEEeec-cchHH
Confidence            3589999999999999996542      33444333 0111222222220 0000                 11 22566


Q ss_pred             hhcCCCCCceEEEEeCCCCceEEEEeCCCChHHHHHHHHH
Q 036413          206 GYYKLDSLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLS  245 (346)
Q Consensus       206 ~~y~~~~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~  245 (346)
                      ..|++..+|++.|||+ .|+. ....|..+.+++.+.|.+
T Consensus        95 ~~~~v~~~P~~~iiD~-~G~i-~~~~g~~~~~~l~~~i~~  132 (134)
T d1zzoa1          95 ANFGVTQQPAYAFVDP-HGNV-DVVRGRMSQDELTRRVTA  132 (134)
T ss_dssp             HHTTCCSSSEEEEECT-TCCE-EEEESCCCHHHHHHHHHH
T ss_pred             HhcCCCccCeEEEECC-CCeE-EEEECCCCHHHHHHHHHh
Confidence            7788889999999997 5874 446798888887777654

>d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Trypanosoma brucei brucei [TaxId: 5702]

Probab=96.91  E-value=0.0011  Score=53.37  Aligned_cols=87  Identities=17%  Similarity=0.209  Sum_probs=55.8

Q ss_pred             HhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCC----------------CChHHHHH
Q 036413          141 VGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDD----------------DDSECRKV  204 (346)
Q Consensus       141 ~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~----------------~~~eg~~~  204 (346)
                      .+.=++|.++||+-.+||..|+.....+  .+...++-...+|.++.++.+....+                .......+
T Consensus        23 l~~~~GK~vvl~FwatwC~~C~~~~p~l--~~l~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  100 (144)
T d1o73a_          23 LGSLVGKTVFLYFSASWCPPCRGFTPVL--AEFYEKHHVAKNFEVVLISWDENESDFHDYYGKMPWLALPFDQRSTVSEL  100 (144)
T ss_dssp             SGGGTTCEEEEEEECTTCHHHHHHHHHH--HHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHH
T ss_pred             HHHhCCCEEEEEeChhhCccchhhhHHH--HHHHHHHhhccCeEEEEEecchhHHHHHHHHHhccccceeeeccchHHHH
Confidence            3334689999999999999997764332  11123332224688887776620000                01122347


Q ss_pred             HhhcCCCCCceEEEEeCCCCceEEE
Q 036413          205 CGYYKLDSLPVVLVIDPITGEKMRK  229 (346)
Q Consensus       205 ~~~y~~~~~P~i~iidp~tge~l~~  229 (346)
                      .+.|++..+|++.|||+.+|+.+..
T Consensus       101 ~~~y~v~~~Pt~~lID~~~G~Ii~~  125 (144)
T d1o73a_         101 GKTFGVESIPTLITINADTGAIIGT  125 (144)
T ss_dssp             HHHHTCCSSSEEEEEETTTCCEEES
T ss_pred             HHHcCCCcCCEEEEEECCCCEEEee
Confidence            7889999999999999876876654

>d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

Probab=96.91  E-value=7.4e-05  Score=57.94  Aligned_cols=90  Identities=17%  Similarity=0.210  Sum_probs=56.4

Q ss_pred             hhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcE----EEEEeecCCCCCCCChHHHHHHhhcCCCCCceEE
Q 036413          142 GSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNF----IFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVL  217 (346)
Q Consensus       142 Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nF----Vfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~i~  217 (346)
                      ..+.+|.+||+++++||..|+.|.. +|  +.+.+.+...++    ++...+..           ..+..|++..||+|.
T Consensus        16 v~~~~k~vlV~fya~wC~~Ck~~~p-~~--~~la~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~v~~~Pti~   81 (116)
T d2djja1          16 VLDDTKDVLIEFYAPWCGHCKALAP-KY--EELGALYAKSEFKDRVVIAKVDAT-----------ANDVPDEIQGFPTIK   81 (116)
T ss_dssp             SSCTTSCEEEEEECSSCTTHHHHHH-HH--HHHHHHHTTSSCTTSSEEEEEETT-----------TSCCSSCCSSSSEEE
T ss_pred             HhcCCCCEEEEEEecccccccccch-HH--HHHHHHHhcccccceeEEEecccc-----------hhhhcccccCCCEEE
Confidence            3467899999999999999999954 33  344444431322    33333222           234568899999999


Q ss_pred             EEeCCCCceE--EEEeCCCChHHHHHHHHHHHHcCC
Q 036413          218 VIDPITGEKM--RKWCGMVDPVSLLEDLLSFMESGP  251 (346)
Q Consensus       218 iidp~tge~l--~~~~G~~~~~~~i~~L~~fl~~~~  251 (346)
                      ++..  |+..  ....|..+.++    |.+||+++.
T Consensus        82 ~f~~--g~~~~~~~~~g~~~~~~----l~~fi~~~~  111 (116)
T d2djja1          82 LYPA--GAKGQPVTYSGSRTVED----LIKFIAENG  111 (116)
T ss_dssp             EECS--SCTTSCCCCCCCSCHHH----HHHHHHHTS
T ss_pred             EEEC--CccCceEEecCCCCHHH----HHHHHHHcc
Confidence            8853  4432  23567777655    445665544

>d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin II
species: Crithidia fasciculata [TaxId: 5656]

Probab=96.90  E-value=0.0014  Score=52.93  Aligned_cols=81  Identities=14%  Similarity=0.181  Sum_probs=55.6

Q ss_pred             HhhhcCcEEEEEecCCCCccccccccccCCCHHHHHH----hccCcEEEEEeecCCCCCCC----------------ChH
Q 036413          141 VGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQT----IRASNFIFWQVYDDDDDDDD----------------DSE  200 (346)
Q Consensus       141 ~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~----i~~~nFVfw~~~~~~~~~~~----------------~~e  200 (346)
                      .+--++|.+|||+-.+||.+|+...      +.+.++    -+..+|++..++.++ +.++                +..
T Consensus        23 ls~l~GK~vll~FwAtWC~pC~~~~------p~L~~l~~~~~~~~~~~vi~vs~D~-~~~~~~~~~~~~~~~~~~~~d~~   95 (144)
T d1i5ga_          23 LPSLAGKTVFFYFSASWCPPSRAFT------PQLIDFYKAHAEKKNFEVMLISWDE-SAEDFKDYYAKMPWLALPFEDRK   95 (144)
T ss_dssp             GGGGTTSEEEEEEECTTCHHHHHHH------HHHHHHHHHHTTTTTEEEEEEECCS-SHHHHHHHHTTCSSEECCTTCHH
T ss_pred             HHHcCCCEEEEEEEecCCchHhhhh------HhHHHHHHHHHhccCcEEEEEeccc-cHHHHHHHHHhCCCCceeeEChH
Confidence            3445789999999999999998763      333333    222368777776662 0000                223


Q ss_pred             H-HHHHhhcCCCCCceEEEEeCCCCceEE
Q 036413          201 C-RKVCGYYKLDSLPVVLVIDPITGEKMR  228 (346)
Q Consensus       201 g-~~~~~~y~~~~~P~i~iidp~tge~l~  228 (346)
                      + ..+.+.|++..+|++.|||+.+|+.+.
T Consensus        96 ~~~~l~~~y~v~~iPt~~lid~~~G~vi~  124 (144)
T d1i5ga_          96 GMEFLTTGFDVKSIPTLVGVEADSGNIIT  124 (144)
T ss_dssp             HHHHHHHHTTCCSSSEEEEEETTTCCEEE
T ss_pred             HHHHHHHHCCCCCcCEEEEEeCCCCEEEe
Confidence            3 347788999999999999986687764

>d1s3si_ d.15.1.2 (I:) p47 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: p47
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.64  E-value=0.00014  Score=48.89  Aligned_cols=19  Identities=26%  Similarity=0.356  Sum_probs=0.0

Q ss_pred             CCCCCeeEEEEEcCCCccc
Q 036413          286 VARNLVCRIGVRLPDGQEA  304 (346)
Q Consensus       286 ~~~~~~trIqiRlpdG~ri  304 (346)
                      |+..++|+|||||+||+|+
T Consensus        14 d~s~PtT~iQiRL~dG~R~   32 (50)
T d1s3si_          14 NEAEPTTNIQIRLADGGRL   32 (50)
T ss_dssp             -------------------
T ss_pred             cCCCCceEEEEEeCCCCEE
Confidence            4567899999999999998

>d1o8xa_ c.47.1.10 (A:) Tryparedoxin I {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Crithidia fasciculata [TaxId: 5656]

Probab=96.48  E-value=0.0021  Score=51.14  Aligned_cols=85  Identities=13%  Similarity=0.149  Sum_probs=56.2

Q ss_pred             hhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCC---------CCC-------ChHHHHHHh
Q 036413          143 SDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDD---------DDD-------DSECRKVCG  206 (346)
Q Consensus       143 k~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~---------~~~-------~~eg~~~~~  206 (346)
                      .-++|.++||+-++||..|+.....+  .+...++-...++++..++.+...         ...       .....++++
T Consensus        23 ~l~GK~vll~Fwa~wC~~C~~~~~~l--~~l~~~~~~~~~~~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~  100 (144)
T d1o8xa_          23 SLAGKLVFFYFSASWCPPARGFTPQL--IEFYDKFHESKNFEVVFCTWDEEEDGFAGYFAKMPWLAVPFAQSEAVQKLSK  100 (144)
T ss_dssp             GGTTCEEEEEEECTTCHHHHHHHHHH--HHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCGGGHHHHHHHHH
T ss_pred             HhCCCEEEEEeccccccccccccchh--HHhhhhcccccccccccccccccHHHHHHHHhhccccceeeecccchhhHHH
Confidence            34689999999999999998764322  122233322246777777666200         000       123567889


Q ss_pred             hcCCCCCceEEEEeCCCCceEEE
Q 036413          207 YYKLDSLPVVLVIDPITGEKMRK  229 (346)
Q Consensus       207 ~y~~~~~P~i~iidp~tge~l~~  229 (346)
                      .|++..+|++.|||+.+|+.+..
T Consensus       101 ~y~v~~~Pt~~liD~~~G~Vi~~  123 (144)
T d1o8xa_         101 HFNVESIPTLIGVDADSGDVVTT  123 (144)
T ss_dssp             HTTCCSSSEEEEEETTTCCEEES
T ss_pred             HcCCCcCCEEEEEeCCCCEEEEE
Confidence            99999999999999866776543

>d1vg5a_ a.5.2.1 (A:) Rhomboid family protein At3g58460 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Rhomboid family protein At3g58460
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.43  E-value=0.0023  Score=46.35  Aligned_cols=43  Identities=16%  Similarity=0.165  Sum_probs=38.9

Q ss_pred             hHHHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhhcCCC
Q 036413            9 QRKRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNNNSNN   53 (346)
Q Consensus         9 ~~~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~~~~~   53 (346)
                      ..++.|.+.+++  |=+.+.|++-|++|+||+|.|++.-|++.+.
T Consensus        28 ~~ee~i~~L~~M--GF~~~~a~~AL~~~~~n~e~A~~~Ll~~~~p   70 (73)
T d1vg5a_          28 ASEEQIQKLVAM--GFDRTQVEVALAAADDDLTVAVEILMSQSGP   70 (73)
T ss_dssp             CCHHHHHHHHTT--TCCHHHHHHHHHHHTSCHHHHHHHHHTCSCS
T ss_pred             cCHHHHHHHHHh--CCCHHHHHHHHHHhCCCHHHHHHHHHhCCCC
Confidence            457899999999  7899999999999999999999999987653

>d1oqya1 a.5.2.1 (A:160-200) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: DNA repair protein Hhr23a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.40  E-value=0.00082  Score=43.41  Aligned_cols=38  Identities=16%  Similarity=0.269  Sum_probs=34.4

Q ss_pred             hHHHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHh
Q 036413            9 QRKRVISSFLEITNGQTEETALKILNATNWNLDKAILRFN   48 (346)
Q Consensus         9 ~~~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~   48 (346)
                      +.+++|.+.+++  |=+.+.|++-|.+++||+|.|++.-|
T Consensus         3 ~~e~~i~~L~~M--GF~~~~a~~AL~~~~~N~e~A~~~Ll   40 (41)
T d1oqya1           3 EYETMLTEIMSM--GYERERVVAALRASYNNPHRAVEYLL   40 (41)
T ss_dssp             THHHHHHHHHTT--TCCSHHHHHHHHHSCSSTTHHHHTTT
T ss_pred             hHHHHHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHHh
Confidence            567899999999  89999999999999999999998544

>d1wgna_ a.5.2.1 (A:) Ubiquitin-associated protein 1, UBAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin-associated protein 1, UBAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.15  E-value=0.003  Score=44.46  Aligned_cols=43  Identities=12%  Similarity=0.280  Sum_probs=38.9

Q ss_pred             hhHHHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhhcCC
Q 036413            8 KQRKRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNNNSN   52 (346)
Q Consensus         8 ~~~~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~~~~   52 (346)
                      +..++.|.+.+++  |=+.+.|++-|..|+||+|.|++..|.+..
T Consensus        17 ~~de~~v~~L~~M--GF~~~~a~~AL~~~~~n~e~A~~~Lls~~~   59 (63)
T d1wgna_          17 PSERQCVETVVNM--GYSYECVLRAMKKKGENIEQILDYLFAHSG   59 (63)
T ss_dssp             HHHHHHHHHHHHH--HCCHHHHHHHHHHHCSCHHHHHHHHHHHSC
T ss_pred             chhHHHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence            3567899999999  889999999999999999999999998654

>d1wj7a1 a.5.2.1 (A:8-98) Ubiquitin-associated protein 2-like Ubap2l {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin-associated protein 2-like Ubap2l
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.43  E-value=0.011  Score=44.15  Aligned_cols=45  Identities=13%  Similarity=0.299  Sum_probs=40.8

Q ss_pred             hhhHHHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhhcCC
Q 036413            7 KKQRKRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNNNSN   52 (346)
Q Consensus         7 ~~~~~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~~~~   52 (346)
                      .++-.++|.+.|++ |++++++|.-.|--||.|++.||+.-++..+
T Consensus        29 D~~i~~kVkql~e~-T~rsede~~~ALhDcn~D~~~AIn~lLEg~~   73 (91)
T d1wj7a1          29 DADFEEKVKQLIDI-TGKNQDECVIALHDCNGDVNRAINVLLEGNP   73 (91)
T ss_dssp             CHHHHHHHHHHHHH-TCCCHHHHHHHHHHHTSCHHHHHHHHHTCSS
T ss_pred             cHHHHHHHHHHHHH-hCCCHHHHHHHHhcCCccHHHHHHHHHhcCC
Confidence            35667899999999 9999999999999999999999999998653

>d1wjia_ a.5.2.1 (A:) Tudor domain containing protein 3, TDRD3 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Tudor domain containing protein 3, TDRD3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.25  E-value=0.016  Score=40.51  Aligned_cols=44  Identities=16%  Similarity=0.244  Sum_probs=39.6

Q ss_pred             hhHHHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhhcCCC
Q 036413            8 KQRKRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNNNSNN   53 (346)
Q Consensus         8 ~~~~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~~~~~   53 (346)
                      ....+.|.+.+++  |=+...|+.-|.++++|+|.||+-.|++...
T Consensus         7 ~~d~~~v~~L~~M--GF~~~~a~~AL~~~~~~~e~A~~wL~~~~~~   50 (63)
T d1wjia_           7 GVDEKALKHITEM--GFSKEASRQALMDNGNNLEAALNVLLTSNKQ   50 (63)
T ss_dssp             SSCHHHHHHHHTT--TCCHHHHHHHHHHTTSCHHHHHHHHHHHSSC
T ss_pred             ccCHHHHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHHHHCCCC
Confidence            4457899999999  9999999999999999999999999997643

>d2cx4a1 c.47.1.10 (A:4-163) Bacterioferritin comigratory protein {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Bacterioferritin comigratory protein
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=95.21  E-value=0.016  Score=46.58  Aligned_cols=92  Identities=12%  Similarity=0.120  Sum_probs=59.6

Q ss_pred             hcCcEEEEEec-CCCCccccccccccCCCHHHHHHhc---cCcEEEEEeecCCCCCCCChH-------------------
Q 036413          144 DENKWLLVNLQ-SPKEFTSHTLNRDTWADEAVSQTIR---ASNFIFWQVYDDDDDDDDDSE-------------------  200 (346)
Q Consensus       144 ~~~K~LlV~l~-~~~~f~c~~lnRdvw~~~~V~~~i~---~~nFVfw~~~~~~~~~~~~~e-------------------  200 (346)
                      .++|+++|++. +.+|+.|..-.+      .+.++..   +.++.++.++.+      +++                   
T Consensus        28 ~~gk~vvl~f~~~~~cp~C~~~~~------~l~~~~~~~~~~~~~vv~is~d------~~~~~~~~~~~~~~~~~~l~D~   95 (160)
T d2cx4a1          28 KRGRPAVLIFFPAAFSPVCTKELC------TFRDKMAQLEKANAEVLAISVD------SPWCLKKFKDENRLAFNLLSDY   95 (160)
T ss_dssp             TTSSCEEEEECSCTTCHHHHHHHH------HHHHTCTTTSTTCCEEEEEESS------CHHHHHHHHHHHTCSSEEEECT
T ss_pred             hCCCEEEEEecccccCCchhhhhh------hhhccccccccccccccccccc------chhhhhhhcccceeeEEEeecC
Confidence            36788888887 778999865432      2233222   256677777666      433                   


Q ss_pred             HHHHHhhcCC----------CCCceEEEEeCCCCceEEEEeC-----CCChHHHHHHHHHHHH
Q 036413          201 CRKVCGYYKL----------DSLPVVLVIDPITGEKMRKWCG-----MVDPVSLLEDLLSFME  248 (346)
Q Consensus       201 g~~~~~~y~~----------~~~P~i~iidp~tge~l~~~~G-----~~~~~~~i~~L~~fl~  248 (346)
                      ...++..|++          ...|++.|||+ .|....+|.+     ..+.+++++.|.+.+.
T Consensus        96 ~~~~~~~~gv~~~~~~~~~~~~~~~~flId~-~G~I~~~~~~~~~~~~~~~~eil~~l~~l~~  157 (160)
T d2cx4a1          96 NREVIKLYNVYHEDLKGLKMVAKRAVFIVKP-DGTVAYKWVTDNPLNEPDYDEVVREANKIAG  157 (160)
T ss_dssp             TSHHHHHTTCEEEEETTEEEEECCEEEEECT-TSBEEEEEECSSTTCCCCHHHHHHHHHHHHT
T ss_pred             CcchHHHcCccccccccccccceeeEEEEcC-CCEEEEEEEeCCCCCCCCHHHHHHHHHHHcc
Confidence            2234455554          23689999997 6988887754     2356888888887654

>d1wiva_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin isopeptidase T
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.15  E-value=0.018  Score=41.43  Aligned_cols=43  Identities=28%  Similarity=0.330  Sum_probs=38.5

Q ss_pred             hHHHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhhcCCC
Q 036413            9 QRKRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNNNSNN   53 (346)
Q Consensus         9 ~~~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~~~~~   53 (346)
                      ...+.|.+.+++  |=+.+.|+.-|..++||+|.||+-.|++...
T Consensus        28 ~d~~~i~~L~~M--GF~~~~a~~AL~~~~~n~e~Av~~Lls~~~~   70 (73)
T d1wiva_          28 IDQSSVDTLLSF--GFAEDVARKALKASGGDIEKATDWVFNNSGP   70 (73)
T ss_dssp             SCHHHHHHHHHH--TCCHHHHHHHHHHTTSCHHHHHHHHHHSCCS
T ss_pred             CCHHHHHHHHhc--CCCHHHHHHHHHHcCCCHHHHHHHHHcCCCC
Confidence            346789999999  8999999999999999999999999997643

>d1xb2b1 a.5.2.2 (B:56-111) Elongation factor Ts (EF-Ts), N-terminal domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: TS-N domain
domain: Elongation factor Ts (EF-Ts), N-terminal domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=95.03  E-value=0.014  Score=39.94  Aligned_cols=40  Identities=15%  Similarity=0.127  Sum_probs=35.9

Q ss_pred             hhHHHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHh
Q 036413            8 KQRKRVISSFLEITNGQTEETALKILNATNWNLDKAILRFN   48 (346)
Q Consensus         8 ~~~~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~   48 (346)
                      +...++|.+..+. ||...-.|+..|+.+|||+|.|+...-
T Consensus         2 a~s~~lvk~LRe~-Tga~~~dcKkAL~e~~gD~ekA~e~Lr   41 (56)
T d1xb2b1           2 ASSKELLMKLRRK-TGYSFINCKKALETCGGDLKQAESWLH   41 (56)
T ss_dssp             HHHHHHHHHHHHH-HCCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             cccHHHHHHHHHH-hCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence            4567899999999 899999999999999999999998654

>d1wp0a1 c.47.1.10 (A:138-297) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.87  E-value=0.029  Score=44.17  Aligned_cols=36  Identities=14%  Similarity=0.204  Sum_probs=31.2

Q ss_pred             ceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHHcC
Q 036413          214 PVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMESG  250 (346)
Q Consensus       214 P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~~~  250 (346)
                      +.+.|||| .|..+..+.+..+++++++.|.+.|..|
T Consensus       125 ~~~~LId~-~G~i~~~~~~~~~~~~i~~~I~~~lk~~  160 (160)
T d1wp0a1         125 IIMYLIGP-DGEFLDYFGQNKRKGEIAASIATHMRPY  160 (160)
T ss_dssp             CEEEEECT-TSCEEEEEETTCCHHHHHHHHHHHHTTC
T ss_pred             ceEEEECC-CCcEEEEECCCCCHHHHHHHHHHHHhcC
Confidence            68899998 6999888877789999999999998764

>d1e2ya_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Crithidia fasciculata [TaxId: 5656]

Probab=94.54  E-value=0.058  Score=43.76  Aligned_cols=92  Identities=12%  Similarity=0.087  Sum_probs=59.3

Q ss_pred             hcCcEEEEEec-CCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChH----------------------
Q 036413          144 DENKWLLVNLQ-SPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSE----------------------  200 (346)
Q Consensus       144 ~~~K~LlV~l~-~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~e----------------------  200 (346)
                      =.+||++|+++ ..+|+.|..-.+.+  .+...+|-+ .++.++.++.+      +.+                      
T Consensus        31 ~~GK~vVl~F~p~~~c~~C~~e~~~l--~~~~~~~~~-~~~~v~~is~d------~~~~~~~~~~~~~~~~~~~~~~~~~  101 (167)
T d1e2ya_          31 YKGKYVVLFFYPMDFTFVCPTEIIQF--SDDAKRFAE-INTEVISCSCD------SEYSHLQWTSVDRKKGGLGPMAIPM  101 (167)
T ss_dssp             GTTSEEEEEECSCSSCSSCCHHHHHH--HHTHHHHHT-TTEEEEEEESS------CHHHHHHHHHSCGGGTCCCCCSSCE
T ss_pred             HCCCeEEEEEcccccccccchhhHHH--HHHHHHhhc-CceEEEeecCC------cHHhHHHHHhhHHHhcccccccccc
Confidence            36799999998 78999997643222  223344445 79999999887      432                      


Q ss_pred             ----HHHHHhhcCC------CCCceEEEEeCCCCceEEEEeCC----CChHHHHHHHHH
Q 036413          201 ----CRKVCGYYKL------DSLPVVLVIDPITGEKMRKWCGM----VDPVSLLEDLLS  245 (346)
Q Consensus       201 ----g~~~~~~y~~------~~~P~i~iidp~tge~l~~~~G~----~~~~~~i~~L~~  245 (346)
                          ...++..|++      -.+|++.|||+ .|....++.+.    -+++++++.|..
T Consensus       102 l~d~~~~~~~~y~v~~~~~g~~~r~tfvID~-~G~Ir~~~~~~~~~~~~~~evL~~l~a  159 (167)
T d1e2ya_         102 LADKTKAIARAYGVLDEDSGVAYRGVFIIDP-NGKLRQIIINDMPIGRNVEEVIRLVEA  159 (167)
T ss_dssp             EECTTCHHHHHHTCEETTTTEECEEEEEECT-TSBEEEEEEECTTBCCCHHHHHHHHHH
T ss_pred             cccchhHHHHHcCCCcccCCCceeEEEEECC-CCEEEEEEEcCCCCCCCHHHHHHHHHH
Confidence                2234455655      14789999997 58776554321    256777776643

>d2bwba1 a.5.2.1 (A:328-371) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: DSK2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.51  E-value=0.031  Score=36.22  Aligned_cols=38  Identities=8%  Similarity=0.061  Sum_probs=34.4

Q ss_pred             HHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhh
Q 036413           11 KRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNN   49 (346)
Q Consensus        11 ~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~   49 (346)
                      ...+.+..++ +=.|.+...+.|.+++||++.||..-++
T Consensus         6 ~~QL~qL~~M-GF~d~~~Ni~AL~~t~GdV~~Aie~Ll~   43 (44)
T d2bwba1           6 EHQLRQLNDM-GFFDFDRNVAALRRSGGSVQGALDSLLN   43 (44)
T ss_dssp             HHHHHHHHHT-TCCCHHHHHHHHHHHTTCHHHHHHHHHC
T ss_pred             HHHHHHHHHc-CCCcHHHHHHHHHHcCCCHHHHHHHHhC
Confidence            3568899999 9999999999999999999999998775

>d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Phosducin
domain: Phosducin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.44  E-value=0.023  Score=48.95  Aligned_cols=99  Identities=16%  Similarity=0.213  Sum_probs=66.3

Q ss_pred             CHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccC--cEEEEEeecCCCCCCCChHHHHHHhhcCCC
Q 036413          134 SFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRAS--NFIFWQVYDDDDDDDDDSECRKVCGYYKLD  211 (346)
Q Consensus       134 sf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~--nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~  211 (346)
                      .|.++...+ ..+.|++|.|+.+||..|..|+      +.+..+-. .  +--|..++.+         ...++..|++.
T Consensus       109 ~f~~~v~~~-~~~~~Vvvhfy~~~~~~C~~~~------~~l~~lA~-~~~~vkF~ki~~~---------~~~~~~~~~i~  171 (217)
T d2trcp_         109 QFLETIEKE-QKVTTIVVNIYEDGVRGCDALN------SSLECLAA-EYPMVKFCKIRAS---------NTGAGDRFSSD  171 (217)
T ss_dssp             HHHHHHHHS-CTTCEEEEEEECTTSTTHHHHH------HHHHHHHT-TCTTSEEEEEEHH---------HHTCSTTSCGG
T ss_pred             HHHHHHHhc-CCCCeEEEEEEcCCCCChhhhh------hhHHHHhh-hcccceEEEEccc---------cchhHHhCCCC
Confidence            366666433 4467999999999999999995      44444444 2  2344455433         12366789999


Q ss_pred             CCceEEEEeCCCCceEEEEeCCCC--h-HHHHHHHHHHHHcCC
Q 036413          212 SLPVVLVIDPITGEKMRKWCGMVD--P-VSLLEDLLSFMESGP  251 (346)
Q Consensus       212 ~~P~i~iidp~tge~l~~~~G~~~--~-~~~i~~L~~fl~~~~  251 (346)
                      .+|++++.-  .|+.+..+.|..+  . +-....|..||.++-
T Consensus       172 ~lPtl~~yk--~G~~v~~~vg~~~~~g~~~~~~~lE~~L~~~g  212 (217)
T d2trcp_         172 VLPTLLVYK--GGELISNFISVAEQFAEDFFAADVESFLNEYG  212 (217)
T ss_dssp             GCSEEEEEE--TTEEEEEETTGGGGSCSSCCHHHHHHHHHTTT
T ss_pred             CCCeEEEEE--CCEEEEEEECccccccccCCHHHHHHHHHHcC
Confidence            999999996  6999999877421  1 112456777776654

>d2b7ka1 c.47.1.10 (A:111-279) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.34  E-value=0.08  Score=41.29  Aligned_cols=37  Identities=14%  Similarity=0.227  Sum_probs=30.2

Q ss_pred             CCceEEEEeCCCCceEEEEeCCCChHHHHHHHHHHHHc
Q 036413          212 SLPVVLVIDPITGEKMRKWCGMVDPVSLLEDLLSFMES  249 (346)
Q Consensus       212 ~~P~i~iidp~tge~l~~~~G~~~~~~~i~~L~~fl~~  249 (346)
                      ..|++.|||| .|+.+..+.+..+++.++++|.+-|..
T Consensus       129 h~~~~fLID~-~G~vv~~~~~~~~~~~~~~~I~e~ik~  165 (169)
T d2b7ka1         129 HSIFFYLMDP-EGQFVDALGRNYDEKTGVDKIVEHVKS  165 (169)
T ss_dssp             TCCCEEEECT-TSCEEEEECTTCCTTHHHHHHHHHHHH
T ss_pred             ccceEEEECC-CCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence            4589999998 699999988888888887777776654

>d2dnaa1 a.5.2.1 (A:12-61) Ubiquilin-like protein Ubqlnl {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquilin-like protein Ubqlnl
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.31  E-value=0.042  Score=36.52  Aligned_cols=40  Identities=15%  Similarity=0.209  Sum_probs=36.4

Q ss_pred             HHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhhcC
Q 036413           11 KRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNNNS   51 (346)
Q Consensus        11 ~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~~~   51 (346)
                      ...+.+..++ +=.|.+...+.|.++++|++.||...++..
T Consensus         9 ~~QL~qL~~M-GF~d~~~Ni~AL~~t~GdV~~Aie~Ll~~~   48 (50)
T d2dnaa1           9 SKEMECLQAM-GFVNYNANLQALIATDGDTNAAIYKLKSSQ   48 (50)
T ss_dssp             HHHHHHHHHH-TCCCHHHHHHHHHHTTSCHHHHHHHHHHCC
T ss_pred             HHHHHHHHHc-CCCCHHHHHHHHHHcCCCHHHHHHHHHhcC
Confidence            4578899999 999999999999999999999999988754

>d1aipc1 a.5.2.2 (C:2-53) Elongation factor Ts (EF-Ts), N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: TS-N domain
domain: Elongation factor Ts (EF-Ts), N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=94.30  E-value=0.023  Score=38.13  Aligned_cols=38  Identities=18%  Similarity=0.351  Sum_probs=34.0

Q ss_pred             HHHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHh
Q 036413           10 RKRVISSFLEITNGQTEETALKILNATNWNLDKAILRFN   48 (346)
Q Consensus        10 ~~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~   48 (346)
                      +-++|.+..+. ||...-.|++.|+.+|||+|.|+...=
T Consensus         2 ~~elvK~LR~~-Tga~~~dcKkAL~e~~gD~ekA~e~Lr   39 (52)
T d1aipc1           2 QMELIKKLREA-TGAGMMDVKRALEDAGWDEEKAVQLLR   39 (52)
T ss_dssp             HHHHHHHHHHH-HCCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHH-hCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence            34788999999 899999999999999999999998653

>d2cvba1 c.47.1.10 (A:2-188) Probable thiol-disulfide isomerase/thioredoxin TTHA0593 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol-disulfide isomerase/thioredoxin TTHA0593
species: Thermus thermophilus [TaxId: 274]

Probab=94.30  E-value=0.072  Score=44.35  Aligned_cols=104  Identities=15%  Similarity=0.156  Sum_probs=61.1

Q ss_pred             hhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCC--CCCh-------------------H
Q 036413          142 GSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDD--DDDS-------------------E  200 (346)
Q Consensus       142 Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~--~~~~-------------------e  200 (346)
                      +.-++|++||++-++||..|+.---.+   ..+.+-.+ +++.|..+.......  .++.                   +
T Consensus        28 sd~kGk~vvl~FwatwCp~C~~~~p~l---~~l~~~y~-~~v~~v~i~snd~~~~~~~~~e~~~~~~~~~~~~~p~l~D~  103 (187)
T d2cvba1          28 SQFHEPLLAVVFMCNHCPYVKGSIGEL---VALAERYR-GKVAFVGINANDYEKYPEDAPEKMAAFAEEHGIFFPYLLDE  103 (187)
T ss_dssp             GGCCSSEEEEEEECSSCHHHHTTHHHH---HHHHHHTT-TTEEEEEEECCCTTTCGGGSHHHHHHHHHHHTCCSCEEECS
T ss_pred             HHhCCCeEEEEEeCCCCccchhhhhhh---hhhhhhcc-ccceeeeeeccccccccccchHHHHHHHHHhCCcceeeech
Confidence            334578999999999999886542111   12222234 566666665431000  0011                   1


Q ss_pred             HHHHHhhcCCCCCceEEEEeCCCCceEEEEeCC----------CChHHHHHHHHHHHHcCCc
Q 036413          201 CRKVCGYYKLDSLPVVLVIDPITGEKMRKWCGM----------VDPVSLLEDLLSFMESGPR  252 (346)
Q Consensus       201 g~~~~~~y~~~~~P~i~iidp~tge~l~~~~G~----------~~~~~~i~~L~~fl~~~~~  252 (346)
                      ...++..|++..+|++.|||+ +|+.+.+  |.          .+..+|...|...+...+.
T Consensus       104 ~~~~~~~~~v~~~P~~~liD~-~G~i~y~--G~idd~~~~~~~~~~~~L~~Ai~~ll~g~~~  162 (187)
T d2cvba1         104 TQEVAKAYRALRTPEVFLFDE-RRLLRYH--GRVNDNPKDPSKVQSHDLEAAIEALLRGEEP  162 (187)
T ss_dssp             SSHHHHHTTCCEESEEEEECT-TCBEEEE--ECSSSCTTCGGGCCCCHHHHHHHHHHTTCCC
T ss_pred             hhhhcccccccceeeEEEEcC-CCeEEEE--eeecCCCCCCCCCCHHHHHHHHHHHHcCCCC
Confidence            334557788889999999997 6887643  43          2334566677777766544

>d1xzoa1 c.47.1.10 (A:3-174) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Bacillus subtilis [TaxId: 1423]

Probab=94.19  E-value=0.13  Score=41.78  Aligned_cols=31  Identities=16%  Similarity=0.441  Sum_probs=23.8

Q ss_pred             ceEEEEeCCCCceEEEEeCC--CChHHHHHHHHH
Q 036413          214 PVVLVIDPITGEKMRKWCGM--VDPVSLLEDLLS  245 (346)
Q Consensus       214 P~i~iidp~tge~l~~~~G~--~~~~~~i~~L~~  245 (346)
                      |.+.|||| .|..+..+.|.  ...+++++.|++
T Consensus       135 ~~~~liD~-~G~i~~~~~g~~~~~~~~l~~dik~  167 (172)
T d1xzoa1         135 SSFYLVGP-DGKVLKDYNGVENTPYDDIISDVKS  167 (172)
T ss_dssp             CEEEEECT-TSEEEEEEESSSSCCHHHHHHHHHH
T ss_pred             eEEEEEcC-CCeEEEEEcCCCCCCHHHHHHHHHH
Confidence            67899997 59888888885  356778877765

>d2bmxa1 c.47.1.10 (A:2-170) Alkyl hydroperoxide reductase AhpC {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.16  E-value=0.049  Score=44.32  Aligned_cols=91  Identities=15%  Similarity=0.049  Sum_probs=57.9

Q ss_pred             hcCcEEEEEec-CCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChH----------------------
Q 036413          144 DENKWLLVNLQ-SPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSE----------------------  200 (346)
Q Consensus       144 ~~~K~LlV~l~-~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~e----------------------  200 (346)
                      -.+||+++++. ..+|+.|..-...+  .+...+|-+ .+..++.++.+      +.+                      
T Consensus        42 ~~GK~vvl~f~p~~~~p~C~~~~~~~--~~~~~~~~~-~g~~vv~is~d------~~~~~~~~~~~~~~~~~~~f~ll~D  112 (169)
T d2bmxa1          42 HPGKWRVVFFWPKDFTFVCPTEIAAF--SKLNDEFED-RDAQILGVSID------SEFAHFQWRAQHNDLKTLPFPMLSD  112 (169)
T ss_dssp             STTCEEEEEECSCTTSCCCHHHHHHH--HHTHHHHHT-TTEEEEEEESS------CHHHHHHHHHHCTTGGGCCSCEEEC
T ss_pred             HCCCeEEEEEecCCCCcccccccccc--ccccccccc-cCcceeecccc------chhhhhhhcccccccccceEEEEec
Confidence            45789999997 77898885443221  123333444 68888888887      322                      


Q ss_pred             -HHHHHhhcCC-----CCCceEEEEeCCCCceEEEEeCC----CChHHHHHHHH
Q 036413          201 -CRKVCGYYKL-----DSLPVVLVIDPITGEKMRKWCGM----VDPVSLLEDLL  244 (346)
Q Consensus       201 -g~~~~~~y~~-----~~~P~i~iidp~tge~l~~~~G~----~~~~~~i~~L~  244 (346)
                       ..++++.|++     ...|+..|||+ .|.....+.+.    ...+++++.|.
T Consensus       113 ~~~~v~~~ygv~~~~~~~~r~~fvID~-~G~I~~~~~~~~~~~~~~~evl~~l~  165 (169)
T d2bmxa1         113 IKRELSQAAGVLNADGVADRVTFIVDP-NNEIQFVSATAGSVGRNVDEVLRVLD  165 (169)
T ss_dssp             TTSHHHHHHTCBCTTSSBCEEEEEECT-TSBEEEEEEECTTCCCCHHHHHHHHH
T ss_pred             cHHHHHHHcCCCccCCccceeEEEEcC-CCEEEEEEEcCCCCCCCHHHHHHHHH
Confidence             2345566666     46789999997 58877665432    23456665554

>d1vdla_ a.5.2.1 (A:) Ubiquitin carboxyl-terminal hydrolase 25 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin carboxyl-terminal hydrolase 25
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.11  E-value=0.04  Score=39.41  Aligned_cols=44  Identities=20%  Similarity=0.274  Sum_probs=39.7

Q ss_pred             hhHHHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhhcC
Q 036413            8 KQRKRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNNNS   51 (346)
Q Consensus         8 ~~~~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~~~   51 (346)
                      ..+.-+|.|..+||+..|...-.+.|+++++||..||...-+..
T Consensus        22 ~hqQ~lLNQLrEITGIqD~q~L~~ALkas~Gdl~~AV~~LT~~~   65 (80)
T d1vdla_          22 KHQQTFLNQLREITGINDAQILQQALKDSNGNLELAVAFLTAKN   65 (80)
T ss_dssp             SCHHHHHHHHHHHSCCCCHHHHHHHHHHHTSCHHHHHHHHHTTS
T ss_pred             hHHHHHHHHHHHHhCCCcHHHHHHHHHhcCCCHHHHHHHHhcCC
Confidence            35677999999999999999999999999999999999887754

>d1z96a1 a.5.2.1 (A:295-332) UBA-domain protein mud1 {Schizosaccharomyces pombe [TaxId: 4896]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: UBA-domain protein mud1
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=94.08  E-value=0.041  Score=33.06  Aligned_cols=34  Identities=26%  Similarity=0.273  Sum_probs=30.3

Q ss_pred             HHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHH
Q 036413           11 KRVISSFLEITNGQTEETALKILNATNWNLDKAILR   46 (346)
Q Consensus        11 ~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~   46 (346)
                      ..+|+|.+++  |-|+-+|.|.|.++|+||+.|.+-
T Consensus         3 nskiaqlvsm--gfdpleaaqaldaangdldvaasf   36 (38)
T d1z96a1           3 NSKIAQLVSM--GFDPLEAAQALDAANGDLDVAASF   36 (38)
T ss_dssp             HHHHHHHHHT--TCCHHHHHHHHHHTTTCHHHHHHH
T ss_pred             chHHHHHHHc--CCCHHHHHHHHhhhcCcHHHHHHh
Confidence            3578999988  999999999999999999999764

>d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Endoplasmic reticulum protein ERP29, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.99  E-value=0.55  Score=35.62  Aligned_cols=101  Identities=17%  Similarity=0.293  Sum_probs=58.7

Q ss_pred             cCHHHHHHHhhhcCcEEEEEecCCCCccccccccccCCCHHHHHHhc-cCcEEEEEeecCCCCCCCChHHHHHHhhcC--
Q 036413          133 GSFEKAKDVGSDENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIR-ASNFIFWQVYDDDDDDDDDSECRKVCGYYK--  209 (346)
Q Consensus       133 gsf~~A~~~Ak~~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~-~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~--  209 (346)
                      -+|++.+    .++|.+||++..+||-.|  +| ..|  ..+...+. ..+-+.=.+.+...+   ..+...++..|+  
T Consensus        12 ~nFd~~i----~~~~~~lV~F~~~wc~~~--~~-~~~--~~la~~~~~~~~~~~~~V~~~~vd---~~~n~~l~~~~~~~   79 (122)
T d1g7ea_          12 VTFYKVI----PKSKFVLVKFDTQYPYGE--KQ-DEF--KRLAENSASSDDLLVAEVGISDYG---DKLNMELSEKYKLD   79 (122)
T ss_dssp             HHHHHHG----GGSSEEEEEEECSSCCTT--TT-HHH--HHHHHHGGGCSSEEEEEEESCCTT---SCHHHHHHHHHTCS
T ss_pred             HhHHHHH----hhCCeEEEEEecCCcCcc--cC-HHH--HHHHHHHHHHHHHhhhccceeecc---ccccHHHHHhhccc
Confidence            3455544    557899999999998544  32 111  23333333 123332233332100   555677877654  


Q ss_pred             CCCCceEEEEeCCCCc--eEEEEeCCCChHHHHHHHHHHHHcCC
Q 036413          210 LDSLPVVLVIDPITGE--KMRKWCGMVDPVSLLEDLLSFMESGP  251 (346)
Q Consensus       210 ~~~~P~i~iidp~tge--~l~~~~G~~~~~~~i~~L~~fl~~~~  251 (346)
                      +..||+|.+.-.  |.  ......|..+.+    .|.+|++++.
T Consensus        80 I~~yPTi~~f~~--G~~~~~~~y~G~rt~~----~l~~fi~~~~  117 (122)
T d1g7ea_          80 KESYPVFYLFRD--GDFENPVPYSGAVKVG----AIQRWLKGQG  117 (122)
T ss_dssp             SSSCEEEEEEES--SCCCCCEEEESCCCHH----HHHHHHHTTS
T ss_pred             ccCCCeEEEEec--CcccCceecCCCCCHH----HHHHHHHhcc
Confidence            679999999874  54  334578988865    4556666554

>d1uula_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=93.60  E-value=0.056  Score=45.62  Aligned_cols=92  Identities=14%  Similarity=0.084  Sum_probs=62.2

Q ss_pred             hcCcEEEEEec-CCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChH----------------------
Q 036413          144 DENKWLLVNLQ-SPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSE----------------------  200 (346)
Q Consensus       144 ~~~K~LlV~l~-~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~e----------------------  200 (346)
                      -.+||++++++ ..+|+.|..=..++  .+...+|-+ .+..+++++.+      +.+                      
T Consensus        31 ~~GK~vVL~FyP~~~t~~C~~E~~~f--~~~~~~f~~-~g~~VlgIS~D------s~~s~~~~~~~~~~~~~~~~l~fpl  101 (194)
T d1uula_          31 YKGKWLVLFFYPMDFTFVCPTEICQF--SDRVKEFSD-IGCEVLACSMD------SEYSHLAWTSIERKRGGLGQMNIPI  101 (194)
T ss_dssp             GTTSEEEEEECSCTTCSHHHHHHHHH--HHTHHHHHT-TTEEEEEEESS------CHHHHHHHHHSCGGGTCCCSCSSCE
T ss_pred             hCCCeEEEEEEeCCccccchhhhhHH--Hhhhhhhcc-CceEEEEEecC------chhhhhhhhhhhhhhccccCCCcce
Confidence            35899999998 77899986542221  233444555 79999999988      433                      


Q ss_pred             ----HHHHHhhcCC------CCCceEEEEeCCCCceEEEEeCC----CChHHHHHHHHH
Q 036413          201 ----CRKVCGYYKL------DSLPVVLVIDPITGEKMRKWCGM----VDPVSLLEDLLS  245 (346)
Q Consensus       201 ----g~~~~~~y~~------~~~P~i~iidp~tge~l~~~~G~----~~~~~~i~~L~~  245 (346)
                          ...++..|++      -.+|...|||| .|.....|.+.    -.+++++..|..
T Consensus       102 lsD~~~~v~~~ygv~~~~~~~~~R~tfvID~-~G~I~~~~~~~~~~~r~~~E~Lr~l~a  159 (194)
T d1uula_         102 LADKTKCIMKSYGVLKEEDGVAYRGLFIIDP-KQNLRQITVNDLPVGRDVDEALRLVKA  159 (194)
T ss_dssp             EECTTCHHHHHHTCEETTTTEECEEEEEECT-TSBEEEEEEECTTBCCCHHHHHHHHHH
T ss_pred             eeCCcchHHHHcCCeeccCCceEEEEEEECC-CCeEEEEEEecCCCCcCHHHHHHHHHH
Confidence                2346667776      24788999997 68877776432    256777766654

>d1efub3 a.5.2.2 (B:1-54) Elongation factor Ts (EF-Ts), N-terminal domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: TS-N domain
domain: Elongation factor Ts (EF-Ts), N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=93.23  E-value=0.044  Score=37.04  Aligned_cols=37  Identities=19%  Similarity=0.223  Sum_probs=33.3

Q ss_pred             HHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHh
Q 036413           11 KRVISSFLEITNGQTEETALKILNATNWNLDKAILRFN   48 (346)
Q Consensus        11 ~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~   48 (346)
                      .++|.+..+. ||...-.|+..|+.++||+|.|+...=
T Consensus         5 ~~~iK~LR~~-Tgag~~dCKkAL~e~~gD~ekA~e~Lr   41 (54)
T d1efub3           5 ASLVKELRER-TGAGMMDCKKALTEANGDIELAIENMR   41 (54)
T ss_dssp             HHHHHHHHHH-HCCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             HHHHHHHHHH-hCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence            3678899999 899999999999999999999998653

>d1we0a1 c.47.1.10 (A:1-166) Alkyl hydroperoxide reductase AhpC {Amphibacillus xylanus [TaxId: 1449]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Amphibacillus xylanus [TaxId: 1449]

Probab=93.11  E-value=0.18  Score=41.07  Aligned_cols=94  Identities=15%  Similarity=0.191  Sum_probs=60.1

Q ss_pred             hhhcCcEEEEEecC-CCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHH-------------------
Q 036413          142 GSDENKWLLVNLQS-PKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSEC-------------------  201 (346)
Q Consensus       142 Ak~~~K~LlV~l~~-~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg-------------------  201 (346)
                      +.-.+||+++++.- .+|+.|..-..++  .+...+|-+ .++.+++++.+      +.+.                   
T Consensus        27 sd~~GK~vvl~F~p~~~~p~C~~e~~~~--~~~~~~f~~-~g~~vv~IS~D------~~~~~~~~~~~~~~~~~~~fpll   97 (166)
T d1we0a1          27 ADLKGKWSIVVFYPADFSFVCPTELEDV--QKEYAELKK-LGVEVYSVSTD------THFVHKAWHENSPAVGSIEYIMI   97 (166)
T ss_dssp             TTTSSSEEEEEECSCTTCSSCTHHHHHH--HHHHHHHHH-TTEEEEEEESS------CHHHHHHHHHSCHHHHTCCSEEE
T ss_pred             HHhCCCeEEEEEecccCCcHHHHHHHHH--HHHHHhhcc-cceEEEecccc------cHHHHHHHhhhhhhhcccccccc
Confidence            44568999999985 4899986532221  222334444 89999999988      5432                   


Q ss_pred             ----HHHHhhcCCC------CCceEEEEeCCCCceEEEEeCC----CChHHHHHHHHH
Q 036413          202 ----RKVCGYYKLD------SLPVVLVIDPITGEKMRKWCGM----VDPVSLLEDLLS  245 (346)
Q Consensus       202 ----~~~~~~y~~~------~~P~i~iidp~tge~l~~~~G~----~~~~~~i~~L~~  245 (346)
                          .+++..|++-      ..|...|||| .|.....+.+.    -+++++++.|..
T Consensus        98 ~D~~~~v~~~ygv~~~~~~~~~r~tfvID~-~G~I~~~~i~~~~~~r~~~eil~~lka  154 (166)
T d1we0a1          98 GDPSQTISRQFDVLNEETGLADRGTFIIDP-DGVIQAIEINADGIGRDASTLINKVKA  154 (166)
T ss_dssp             ECTTCHHHHHTTCEETTTTEECEEEEEECT-TSBEEEEEEECTTSCCCTTHHHHHHHH
T ss_pred             cCcccHHHHHhCCCccccCcccceEEEECC-CCcEEEEEEcCCCCCCCHHHHHHHHHh
Confidence                2344556551      4678999998 58876655432    256777777643

>d1zyea1 c.47.1.10 (A:6-163) Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin-3 (AOP-1, SP-22)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=92.79  E-value=0.23  Score=39.87  Aligned_cols=90  Identities=17%  Similarity=0.106  Sum_probs=60.7

Q ss_pred             cCcEEEEEec-CCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHH----------------------
Q 036413          145 ENKWLLVNLQ-SPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSEC----------------------  201 (346)
Q Consensus       145 ~~K~LlV~l~-~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg----------------------  201 (346)
                      .+||++++++ ..+|+.|..-.+..  ++...+|-+ .+..+++++.+      +.+.                      
T Consensus        25 ~Gk~vVL~Fyp~~~tp~C~~e~~~~--~~~~~~~~~-~~~~vigIS~d------~~~~~~~~~~~~~~~~~~~~~~f~ll   95 (158)
T d1zyea1          25 KGKYLVLFFYPLDFTFVCPTEIIAF--SDKASEFHD-VNCEVVAVSVD------SHFSHLAWINTPRKNGGLGHMNIALL   95 (158)
T ss_dssp             TTSEEEEEECSCTTCSSSHHHHHHH--HHHHHHHHH-TTEEEEEEESS------CHHHHHHHHTSCGGGTCCCSCSSEEE
T ss_pred             CCCeEEEEEeehhcCCccccchhhH--HHhHHHhhc-CCceEEeccCc------CHHHHHHHHhhhHhhccccccccccc
Confidence            5899999998 77899996543222  344455666 89999999988      4332                      


Q ss_pred             ----HHHHhhcCCC------CCceEEEEeCCCCceEEEEeCCC----ChHHHHHHHH
Q 036413          202 ----RKVCGYYKLD------SLPVVLVIDPITGEKMRKWCGMV----DPVSLLEDLL  244 (346)
Q Consensus       202 ----~~~~~~y~~~------~~P~i~iidp~tge~l~~~~G~~----~~~~~i~~L~  244 (346)
                          ..++..|++.      ..|...|||+ .|....+|.+..    +.+++++.|.
T Consensus        96 sD~~~~~~~~ygv~~~~~g~~~R~tfvID~-~G~I~~~~i~~~~~~~~~~EiL~~lk  151 (158)
T d1zyea1          96 SDLTKQISRDYGVLLEGPGLALRGLFIIDP-NGVIKHLSVNDLPVGRSVEETLRLVK  151 (158)
T ss_dssp             ECTTSHHHHHTTCEETTTTEECEEEEEECT-TSBEEEEEEECTTCCCCHHHHHHHHH
T ss_pred             cccccHHHHHHHhccccCCccccEEEEECC-CCEEEEEEEeCCCCCCCHHHHHHHHH
Confidence                2345566652      3567899998 688777665432    4567776665

>d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like structure containing protein C330018D20Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.84  E-value=0.17  Score=37.76  Aligned_cols=80  Identities=20%  Similarity=0.186  Sum_probs=51.2

Q ss_pred             cCcEEEEEecCCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHHHHHhhcCCCCCceEEEEeCCCC
Q 036413          145 ENKWLLVNLQSPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVLVIDPITG  224 (346)
Q Consensus       145 ~~K~LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~i~iidp~tg  224 (346)
                      .....++.+..++|..|+.+-       .+.+-+. ..|-+--+.++      ..+...+...|.+. .|.|.| |   |
T Consensus        14 ~~~p~i~lft~~~C~~C~~a~-------~~L~~~~-~~~~~~~v~vd------~~~~~~l~~~y~~~-VPvl~i-d---g   74 (100)
T d1wjka_          14 RALPVLTLFTKAPCPLCDEAK-------EVLQPYK-DRFILQEVDIT------LPENSTWYERYKFD-IPVFHL-N---G   74 (100)
T ss_dssp             CCCCEEEEEECSSCHHHHHHH-------HHTSTTS-SSSEEEEEETT------SSTTHHHHHHSSSS-CSEEEE-S---S
T ss_pred             CCCCEEEEEECCCCCChHHHH-------HHHHHhh-hhcceEEEecc------cccCHHHHHHhccc-CCceee-c---C
Confidence            334567778899999998772       1111122 34444444555      45567799999986 897654 4   6


Q ss_pred             ceEEEEeCCCChHHHHHHHHH
Q 036413          225 EKMRKWCGMVDPVSLLEDLLS  245 (346)
Q Consensus       225 e~l~~~~G~~~~~~~i~~L~~  245 (346)
                      +.+  ..|.++.+.|.+.|.+
T Consensus        75 ~~~--~~g~~d~~~L~~~L~~   93 (100)
T d1wjka_          75 QFL--MMHRVNTSKLEKQLRK   93 (100)
T ss_dssp             SEE--EESSCCHHHHHHHHHS
T ss_pred             ceE--EeCCCCHHHHHHHHHH
Confidence            655  4477888777776654

>d1veja1 a.5.2.1 (A:8-68) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: 4931431F19Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.65  E-value=0.14  Score=35.27  Aligned_cols=38  Identities=16%  Similarity=0.193  Sum_probs=34.8

Q ss_pred             HHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhh
Q 036413           11 KRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNN   49 (346)
Q Consensus        11 ~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~   49 (346)
                      ...+.+..++ +=.|.+...+.|.++|+|++.||+.-+.
T Consensus        23 ~~QL~qL~eM-GF~d~~~Nl~AL~~t~Gdv~~Aie~Ll~   60 (61)
T d1veja1          23 QQELEELKAL-GFANRDANLQALVATDGDIHAAIEMLLG   60 (61)
T ss_dssp             HHHHHHHHHH-TCCCHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred             HHHHHHHHHc-CCCCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence            5689999999 8899999999999999999999998663

>d2daha1 a.5.2.1 (A:8-48) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquilin-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.52  E-value=0.13  Score=32.56  Aligned_cols=36  Identities=19%  Similarity=0.222  Sum_probs=32.5

Q ss_pred             HHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHh
Q 036413           12 RVISSFLEITNGQTEETALKILNATNWNLDKAILRFN   48 (346)
Q Consensus        12 ~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~   48 (346)
                      ..+.+..++ +=.|.+...+.|..+++|++.||..-.
T Consensus         4 ~QL~~L~~M-GF~d~~~Ni~AL~~t~Gdv~~Aie~Ll   39 (41)
T d2daha1           4 VQLEQLRSM-GFLNREANLQALIATGGDVDAAVEKLR   39 (41)
T ss_dssp             HHHHHHHHH-TCCCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred             HHHHHHHHc-CCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence            468888999 999999999999999999999998754

>d2zcta1 c.47.1.10 (A:6-242) Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin
species: Aeropyrum pernix [TaxId: 56636]

Probab=90.41  E-value=0.3  Score=42.33  Aligned_cols=93  Identities=12%  Similarity=0.001  Sum_probs=60.7

Q ss_pred             hhcCcEEEEEec-CCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChH---------------------
Q 036413          143 SDENKWLLVNLQ-SPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSE---------------------  200 (346)
Q Consensus       143 k~~~K~LlV~l~-~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~e---------------------  200 (346)
                      ..++||+++++| ..+|+.|..=...+  .....+|-+ .+..+++++++      +.+                     
T Consensus        26 ~~kGk~vVLff~P~dftpvCttEl~~~--~~~~~ef~~-~g~~vigiS~D------s~~sh~~w~~~~~~~~~~~l~fpl   96 (237)
T d2zcta1          26 VSQGKWFVLFSHPADFTPVCTTEFVSF--ARRYEDFQR-LGVDLIGLSVD------SVFSHIKWKEWIERHIGVRIPFPI   96 (237)
T ss_dssp             HTTTCEEEEEEESCSSCHHHHHHHHHH--HHTHHHHHH-TTEEEEEEESS------CHHHHHHHHHHHHHHHCCCCCSCE
T ss_pred             hcCCCEEEEEEECCCCCccCHHHHHHH--Hhhhhhhcc-CCcceeeccCC------cHHHHHHHhhhhhhhccccccccc
Confidence            457899999998 67888885422111  122344555 78999999887      432                     


Q ss_pred             ----HHHHHhhcCC-------CCCceEEEEeCCCCceEEEEeCC----CChHHHHHHHHH
Q 036413          201 ----CRKVCGYYKL-------DSLPVVLVIDPITGEKMRKWCGM----VDPVSLLEDLLS  245 (346)
Q Consensus       201 ----g~~~~~~y~~-------~~~P~i~iidp~tge~l~~~~G~----~~~~~~i~~L~~  245 (346)
                          ...++..|++       ...|.+.|||| .|.....+.+.    -+.+++|..|..
T Consensus        97 lsD~~~~vak~yGv~~~~~~~~~~RatFIIDp-dG~Ir~~~~~~~~~gR~~dEiLr~l~a  155 (237)
T d2zcta1          97 IADPQGTVARRLGLLHAESATHTVRGVFIVDA-RGVIRTMLYYPMELGRLVDEILRIVKA  155 (237)
T ss_dssp             EECGGGHHHHHTTCC----CCTTCCEEEEECT-TSBEEEEEECCTTBCCCHHHHHHHHHH
T ss_pred             ccCcchHHHHHcCCccccccccceeeeEEECC-CCEEEEEEEeCCCCCCCHHHHHHHHHH
Confidence                3456677876       36799999998 57754443321    256777776643

>d1n8ja_ c.47.1.10 (A:) Alkyl hydroperoxide reductase AhpC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Salmonella typhimurium [TaxId: 90371]

Probab=89.71  E-value=0.54  Score=38.96  Aligned_cols=97  Identities=16%  Similarity=0.149  Sum_probs=64.8

Q ss_pred             cCcEEEEEec-CCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHHH-HHH-----------------
Q 036413          145 ENKWLLVNLQ-SPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSECR-KVC-----------------  205 (346)
Q Consensus       145 ~~K~LlV~l~-~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg~-~~~-----------------  205 (346)
                      .+||++++++ ..+++.|..--..+  ++...+|-+ .+..+++++.+      +.+.. +++                 
T Consensus        29 kGk~vVL~FyP~~~tp~C~~e~~~f--~~~~~~f~~-~~~~v~gIS~D------s~~sh~~f~~~~~~~~~~~fpllsD~   99 (186)
T d1n8ja_          29 EGRWSVFFFYPADFTFVSPTELGDV--ADHYEELQK-LGVDVYSVSTD------THFTHKAWHSSSETIAKIKYAMIGDP   99 (186)
T ss_dssp             TTSEEEEEECSCTTCSHHHHHHHHH--HHHHHHHHH-TTEEEEEEESS------CHHHHHHHHHHCTTGGGCCSEEEECT
T ss_pred             CCCeEEEEEEeccCCCccHHHHHHH--HHhhhhccc-ccEEEEecccc------CHHHHHHHhccccccccccccccccH
Confidence            6899999998 56777775543333  445566666 89999999998      66542 233                 


Q ss_pred             -----hhcCCC------CCceEEEEeCCCCceEEEEeC----CCChHHHHHHHHHHH--HcCC
Q 036413          206 -----GYYKLD------SLPVVLVIDPITGEKMRKWCG----MVDPVSLLEDLLSFM--ESGP  251 (346)
Q Consensus       206 -----~~y~~~------~~P~i~iidp~tge~l~~~~G----~~~~~~~i~~L~~fl--~~~~  251 (346)
                           ..|++-      ..|...|||| .|.....+..    .-.++++|+.|..+.  +.++
T Consensus       100 ~~~v~~~yGv~~~~~g~~~r~tfiID~-~G~Ir~~~v~~~~~~r~~~eiL~~lkaLQ~~~~~~  161 (186)
T d1n8ja_         100 TGALTRNFDNMREDEGLADRATFVVDP-QGIIQAIEVTAEGIGRDASDLLRKIKAAQYVAAHP  161 (186)
T ss_dssp             TSHHHHHTTCEETTTTEECEEEEEECT-TSBEEEEEEECTTBCCCHHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHhCCCcccCCcceeeEEEECc-hheEEEEeecCCCcccCHHHHHHHHHHHHHHHhcC
Confidence                 344441      3688999998 4776555432    137789888888654  5544

>d2a4va1 c.47.1.10 (A:59-214) Peroxiredoxin dot5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin dot5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.02  E-value=0.92  Score=35.91  Aligned_cols=97  Identities=10%  Similarity=0.054  Sum_probs=56.1

Q ss_pred             hhhcCcEEEEEec-CCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChH-HHHHHhh------------
Q 036413          142 GSDENKWLLVNLQ-SPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSE-CRKVCGY------------  207 (346)
Q Consensus       142 Ak~~~K~LlV~l~-~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~e-g~~~~~~------------  207 (346)
                      .+.+++|++++++ ..||+.|..--+++  .+...+| + +++++++++.+      +.+ ..+++..            
T Consensus        29 ~~~k~~~vvlff~p~~~cp~C~~~~~~~--~~~~~~~-~-~~~~~~~is~d------~~~~~~~f~~~~~l~f~~L~D~~   98 (156)
T d2a4va1          29 ITENNRVVVFFVYPRASTPGSTRQASGF--RDNYQEL-K-EYAAVFGLSAD------SVTSQKKFQSKQNLPYHLLSDPK   98 (156)
T ss_dssp             HHHHCSEEEEEECSSSSSHHHHHHHHHH--HHHHHHH-T-TTCEEEEEESC------CHHHHHHHHHHHTCSSEEEECTT
T ss_pred             HcCCccEEEEEecccccCcchhhhhHHH--HHHHHHH-h-hccceeeeccc------hhhhHHhhhcccCccceeccchH
Confidence            3456899999987 67999997654333  2333344 5 67888888877      444 2345544            


Q ss_pred             ------cCCCCCce-----EEEEeCCCCceEEEEeCCC---ChHHHHHHHHHHHHc
Q 036413          208 ------YKLDSLPV-----VLVIDPITGEKMRKWCGMV---DPVSLLEDLLSFMES  249 (346)
Q Consensus       208 ------y~~~~~P~-----i~iidp~tge~l~~~~G~~---~~~~~i~~L~~fl~~  249 (346)
                            |++...|.     -.+|++ .|....++.|..   .+...++.+.++++.
T Consensus        99 ~~v~~~ygv~~~~~~~~~r~~~i~~-dg~i~~~~~~~~~~~~~~~~~~evl~~lk~  153 (156)
T d2a4va1          99 REFIGLLGAKKTPLSGSIRSHFIFV-DGKLKFKRVKISPEVSVNDAKKEVLEVAEK  153 (156)
T ss_dssp             CHHHHHHTCBSSSSSCBCCEEEEEE-TTEEEEEEESCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCccccCCeeEEEEEEE-CCeEEEEEEEeCCCCCcchHHHHHHHHHHH
Confidence                  44333332     223333 477666665532   344455666666654

>d1zofa1 c.47.1.10 (A:1-170) Thioredoxin reductase TsaA {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin reductase TsaA
species: Helicobacter pylori [TaxId: 210]

Probab=87.01  E-value=0.8  Score=36.97  Aligned_cols=90  Identities=13%  Similarity=0.069  Sum_probs=57.2

Q ss_pred             CcEEEEEec-CCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHH-----------------------
Q 036413          146 NKWLLVNLQ-SPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSEC-----------------------  201 (346)
Q Consensus       146 ~K~LlV~l~-~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg-----------------------  201 (346)
                      +||++++++ ..+|+.|..=.+++  ++...+|-+ .+...++++.+      +.+.                       
T Consensus        33 k~~vvl~FyP~~~tp~C~~e~~~~--~~~~~~f~~-~g~~Vvgis~d------~~~~~~~~~~~~~~~~~~~~~~~~~l~  103 (170)
T d1zofa1          33 KNGVILFFWPKDFTFVCPTEIIAF--DKRVKDFHE-KGFNVIGVSID------SEQVHFAWKNTPVEKGGIGQVSFPMVA  103 (170)
T ss_dssp             SSEEEEEECSCTTCSSCCTHHHHH--HHTHHHHHH-TTEEEEEEESS------CHHHHHHHHTSCGGGTCCCCCSSCEEE
T ss_pred             CCEEEEEEEccccCCcCHHHHHHH--HHhHHhhcc-CCeeEeccccc------chhhHHHHHhhhhhcccccCccccccc
Confidence            469999997 78999985532221  233344555 89999999888      4432                       


Q ss_pred             ---HHHHhhcCCC-----CCceEEEEeCCCCceEEEEeC--C--CChHHHHHHHHH
Q 036413          202 ---RKVCGYYKLD-----SLPVVLVIDPITGEKMRKWCG--M--VDPVSLLEDLLS  245 (346)
Q Consensus       202 ---~~~~~~y~~~-----~~P~i~iidp~tge~l~~~~G--~--~~~~~~i~~L~~  245 (346)
                         ..+++.|++-     ..|...|||| .|.....+.+  .  -+++++++.|..
T Consensus       104 D~~~~v~~~ygv~~~~~~~~r~tfvID~-~G~I~~~~~~~~~~~~~~~eiL~~l~a  158 (170)
T d1zofa1         104 DITKSISRDYDVLFEEAIALRGAFLIDK-NMKVRHAVINDLPLGRNADEMLRMVDA  158 (170)
T ss_dssp             CTTSHHHHHTTCEETTTEECEEEEEEET-TTEEEEEEEESSSCCCHHHHHHHHHHH
T ss_pred             ccccHHHHHcCCCccccceeEEEEEEcC-CCeEEEEEEeCCCCCCCHHHHHHHHHH
Confidence               3455666651     4688999997 5776544322  1  246777766643

>d1a8la1 c.47.1.2 (A:1-119) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=85.91  E-value=3.6  Score=31.39  Aligned_cols=90  Identities=16%  Similarity=0.206  Sum_probs=54.7

Q ss_pred             hhcCcE--EEEEecCCCCccccccccccCCCHHHHHHhc-cCcEEEEEeecCCCCCCCChHHHHHHhhcCCCCCceEEEE
Q 036413          143 SDENKW--LLVNLQSPKEFTSHTLNRDTWADEAVSQTIR-ASNFIFWQVYDDDDDDDDDSECRKVCGYYKLDSLPVVLVI  219 (346)
Q Consensus       143 k~~~K~--LlV~l~~~~~f~c~~lnRdvw~~~~V~~~i~-~~nFVfw~~~~~~~~~~~~~eg~~~~~~y~~~~~P~i~ii  219 (346)
                      ++-.+.  |.++++...|..|+.+.      +-+.++.. +.+.-+--++.+      ++++..++..|+++..|.++|.
T Consensus        18 ~~l~~pV~l~~~~~~~~~~~~~e~~------~ll~ela~lSdki~~~~~~~~------~~e~~~~~~~~~ver~Ps~~i~   85 (119)
T d1a8la1          18 SKMVNPVKLIVFVRKDHCQYCDQLK------QLVQELSELTDKLSYEIVDFD------TPEGKELAKRYRIDRAPATTIT   85 (119)
T ss_dssp             GGCCSCEEEEEEECSSSCTTHHHHH------HHHHHHHTTCTTEEEEEEETT------SHHHHHHHHHTTCCSSSEEEEE
T ss_pred             HhCCCCEEEEEEecCCCchhHHHHH------HHHHHHHhhCCCeEEEEeccC------cchhhhHHHhhccccCceEEEe
Confidence            344443  34445545566665441      11222221 355555556677      8999999999999999999999


Q ss_pred             eCCCCceE-EEEeCCCChHHHHHHHHHH
Q 036413          220 DPITGEKM-RKWCGMVDPVSLLEDLLSF  246 (346)
Q Consensus       220 dp~tge~l-~~~~G~~~~~~~i~~L~~f  246 (346)
                      ++  |+.. .++.|...-.+|-+-|...
T Consensus        86 ~~--g~~~gIrF~GiP~GhEf~SlilaI  111 (119)
T d1a8la1          86 QD--GKDFGVRYFGLPAGHEFAAFLEDI  111 (119)
T ss_dssp             ET--TBCCSEEEESCCCTTHHHHHHHHH
T ss_pred             cC--CcccceEEEeccCchhHHHHHHHH
Confidence            85  4433 3578866655555544443

>d1mn3a_ a.5.2.4 (A:) Vacuolar protein sorting-associated protein vps9 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: CUE domain
domain: Vacuolar protein sorting-associated protein vps9
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.86  E-value=0.59  Score=31.21  Aligned_cols=44  Identities=7%  Similarity=0.125  Sum_probs=39.3

Q ss_pred             hhhhHHHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhh
Q 036413            6 QKKQRKRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNN   49 (346)
Q Consensus         6 ~~~~~~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~   49 (346)
                      +..++.+.+.+|.++=-.-|.+.=+-.|++++||++.||+..+.
T Consensus         8 ~~~e~~e~~~~Lk~MFP~~D~~VI~~VL~a~~G~vd~aidaLL~   51 (54)
T d1mn3a_           8 EENERKDTLNTLQNMFPDMDPSLIEDVCIAKKSRIEPCVDALLS   51 (54)
T ss_dssp             HHHHHHHHHHHHHHHCTTSCHHHHHHHHSCSSCSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence            34678889999999989999999999999999999999997664

>d2cpwa1 a.5.2.1 (A:8-58) Cbl-interacting protein p70, STS1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Cbl-interacting protein p70, STS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.73  E-value=0.71  Score=30.35  Aligned_cols=39  Identities=18%  Similarity=0.193  Sum_probs=33.9

Q ss_pred             hHHHHHHhhhcccCCCCHHHHHHHHHHcCC-CHHHHHHHHhh
Q 036413            9 QRKRVISSFLEITNGQTEETALKILNATNW-NLDKAILRFNN   49 (346)
Q Consensus         9 ~~~~~i~~F~~iTt~~~~~~A~~~L~~~~w-dle~Av~~f~~   49 (346)
                      .....|++.+++  |=+.+.|++-|..+++ |+|.|++=-|+
T Consensus        11 ~~~~~l~~L~~M--GF~~~~a~~AL~~t~n~~ve~A~~WLl~   50 (51)
T d2cpwa1          11 KHGSALDVLLSM--GFPRARAQKALASTGGRSVQTACDWLFS   50 (51)
T ss_dssp             SCCCHHHHHHHH--TCCHHHHHHHHHHTTTSCHHHHHHHHHS
T ss_pred             CCHHHHHHHHHc--CCCHHHHHHHHHHHCCCCHHHHHHHHHc
Confidence            345679999999  9999999999999887 99999987665

>d1whca_ a.5.2.1 (A:) UBA/UBX 33.3 kDa protein {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: UBA/UBX 33.3 kDa protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.58  E-value=0.74  Score=31.66  Aligned_cols=41  Identities=20%  Similarity=0.251  Sum_probs=36.5

Q ss_pred             HHHHHHhhhcccCCCCHHHHHHHHHHcCC-CHHHHHHHHhhcCC
Q 036413           10 RKRVISSFLEITNGQTEETALKILNATNW-NLDKAILRFNNNSN   52 (346)
Q Consensus        10 ~~~~i~~F~~iTt~~~~~~A~~~L~~~~w-dle~Av~~f~~~~~   52 (346)
                      ..+.|.+.+++  |-+.+.|++-|..++. ++|.|++-.|++..
T Consensus         9 d~~~l~~L~~M--GF~~~~a~~AL~~t~n~~~e~A~~Wl~~h~~   50 (64)
T d1whca_           9 ELTALESLIEM--GFPRGRAEKALALTGNQGIEAAMDWLMEHED   50 (64)
T ss_dssp             CCCHHHHHHTT--TCCHHHHHHHHHHHTSCCHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHc--CCCHHHHHHHHHHhCCCCHHHHHHHHHHCCC
Confidence            35689999999  9999999999999976 89999999999764

>d1veka_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin isopeptidase T
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=82.30  E-value=1.1  Score=32.45  Aligned_cols=42  Identities=12%  Similarity=0.241  Sum_probs=37.0

Q ss_pred             HHHHHHhhhcccCCCCHHHHHHHHHHc-CCCHHHHHHHHhhcCCC
Q 036413           10 RKRVISSFLEITNGQTEETALKILNAT-NWNLDKAILRFNNNSNN   53 (346)
Q Consensus        10 ~~~~i~~F~~iTt~~~~~~A~~~L~~~-~wdle~Av~~f~~~~~~   53 (346)
                      ..+.|.+.+++  |=+...|++-|..+ |.|+|.|++-.|++...
T Consensus        29 d~~~v~~L~~M--GF~~~~a~~AL~~t~n~~~e~A~~Wl~~h~~d   71 (84)
T d1veka_          29 NEEIVAQLVSM--GFSQLHCQKAAINTSNAGVEEAMNWLLSHMDD   71 (84)
T ss_dssp             CHHHHHHHHHH--TCCHHHHHHHHHHTTTCCHHHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHc--CCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCC
Confidence            56899999999  99999999999885 57999999999997654

>d2h01a1 c.47.1.10 (A:2-171) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Plasmodium yoelii [TaxId: 5861]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Plasmodium yoelii [TaxId: 5861]

Probab=82.00  E-value=2.7  Score=33.61  Aligned_cols=91  Identities=14%  Similarity=0.132  Sum_probs=58.1

Q ss_pred             cCcEEEEEec-CCCCccccccccccCCCHHHHHHhccCcEEEEEeecCCCCCCCChHH----------------------
Q 036413          145 ENKWLLVNLQ-SPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDDDDDDDDSEC----------------------  201 (346)
Q Consensus       145 ~~K~LlV~l~-~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~~~~~~~~eg----------------------  201 (346)
                      .+||++++++ ..+++-|..=..++  ++...+|-+ .+...++++.+      +.+.                      
T Consensus        26 g~k~vVl~FyP~~~tp~Ct~e~~~f--~~~~~~f~~-~g~~vigIS~D------~~~~~~~~~~~~~~~~~~~~~~f~ll   96 (170)
T d2h01a1          26 GKKYVLLYFYPLDFTFVCPSEIIAL--DKALDSFKE-RNVELLGCSVD------SKFTHLAWKKTPLSQGGIGNIKHTLI   96 (170)
T ss_dssp             TTCEEEEEECSCSSCSSCCHHHHHH--HHTHHHHHH-TTEEEEEEESS------CHHHHHHHHTSCGGGTCCCSCSSEEE
T ss_pred             CCCeEEEEEECCCCCCccchhhHHH--hhhhhhhhc-CCeeEecccCC------cHHHHHhHhhhhhhhccccccCCcee
Confidence            3589999997 67888885443222  233344555 89999999988      4432                      


Q ss_pred             ----HHHHhhcCC-----CCCceEEEEeCCCCceEEEEeCCC----ChHHHHHHHHH
Q 036413          202 ----RKVCGYYKL-----DSLPVVLVIDPITGEKMRKWCGMV----DPVSLLEDLLS  245 (346)
Q Consensus       202 ----~~~~~~y~~-----~~~P~i~iidp~tge~l~~~~G~~----~~~~~i~~L~~  245 (346)
                          ..++..|++     ...+...|||+ .|.....+.+.+    .++++++.|..
T Consensus        97 sD~~~~~~~~ygv~~~~~~~~R~tfiId~-~G~I~~~~~~~~~~~~~~~eil~~l~~  152 (170)
T d2h01a1          97 SDISKSIARSYDVLFNESVALRAFVLIDK-QGVVQHLLVNNLALGRSVDEILRLIDA  152 (170)
T ss_dssp             ECTTSHHHHHTTCEETTTEECCEEEEECT-TSBEEEEEEGGGSSGGGHHHHHHHHHH
T ss_pred             EcCccHHHHHhCCccccccceeeeEEEcC-CCeEEEEEEecCCCCCCHHHHHHHHHH
Confidence                345556665     13578999997 577666654422    44666666654

>d1qmva_ c.47.1.10 (A:) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.54  E-value=1.1  Score=37.28  Aligned_cols=98  Identities=12%  Similarity=0.042  Sum_probs=60.1

Q ss_pred             cCcEEEEEec-CCCCccccccccccCCCHHHHHHhccCcEEEEEeecCC--------C-CC------CC-----ChHHHH
Q 036413          145 ENKWLLVNLQ-SPKEFTSHTLNRDTWADEAVSQTIRASNFIFWQVYDDD--------D-DD------DD-----DSECRK  203 (346)
Q Consensus       145 ~~K~LlV~l~-~~~~f~c~~lnRdvw~~~~V~~~i~~~nFVfw~~~~~~--------~-~~------~~-----~~eg~~  203 (346)
                      .+||++++++ ..+++.|..-...+  .+...+|-+ .+..+++++.+.        . ..      +-     +.....
T Consensus        33 ~Gk~~vL~FyP~~~tp~C~~e~~~~--~~~~~~f~~-~g~~vigIS~D~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~  109 (197)
T d1qmva_          33 KGKYVVLFFYPLDFTFVCPTEIIAF--SNRAEDFRK-LGCEVLGVSVDSQFTHLAWINTPRKEGGLGPLNIPLLADVTRR  109 (197)
T ss_dssp             TTSEEEEEECSCTTSSHHHHHHHHH--HHTHHHHHT-TTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSCEEECTTCH
T ss_pred             CCCeEEEEEecccccccchhhhHHH--HHHHHHhcc-CCcEEEEEecCCHHHHHhhhcchhhhcCcCCCccceEeccchH
Confidence            4799999998 56788885432221  233445555 799999998871        0 00      00     112344


Q ss_pred             HHhhcCCC------CCceEEEEeCCCCceEEEEeCC----CChHHHHHHHHHH
Q 036413          204 VCGYYKLD------SLPVVLVIDPITGEKMRKWCGM----VDPVSLLEDLLSF  246 (346)
Q Consensus       204 ~~~~y~~~------~~P~i~iidp~tge~l~~~~G~----~~~~~~i~~L~~f  246 (346)
                      ++..|++-      .+|...|||| .|.....+...    -..++++..|...
T Consensus       110 va~~ygv~~~~~g~~~R~tfiID~-~g~Ir~~~~~~~~~~r~~~E~lr~l~al  161 (197)
T d1qmva_         110 LSEDYGVLKTDEGIAYRGLFIIDG-KGVLRQITVNDLPVGRSVDEALRLVQAF  161 (197)
T ss_dssp             HHHHTTCEETTTTEECEEEEEECT-TSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             HHHHhCCCcccCCeeeEEEEEECC-CCcEEEEEecCCCcccCHHHHHHHHHhh
Confidence            66667661      5789999998 57765554332    3567777766654

>d1wgla_ a.5.2.4 (A:) Toll-interacting protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: CUE domain
domain: Toll-interacting protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.05  E-value=1.1  Score=30.34  Aligned_cols=42  Identities=17%  Similarity=0.158  Sum_probs=37.0

Q ss_pred             HHHHHHhhhcccCCCCHHHHHHHHHHcCCCHHHHHHHHhhcC
Q 036413           10 RKRVISSFLEITNGQTEETALKILNATNWNLDKAILRFNNNS   51 (346)
Q Consensus        10 ~~~~i~~F~~iTt~~~~~~A~~~L~~~~wdle~Av~~f~~~~   51 (346)
                      .++.|.++.++=-.-|.++-+..|++++||++.||+.-+...
T Consensus         9 ~Ee~i~~LkeMFP~~D~~vI~~VL~a~~G~vd~aid~LL~Ms   50 (59)
T d1wgla_           9 SEEDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLLQMG   50 (59)
T ss_dssp             CHHHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHHHHHHHSS
T ss_pred             cHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhcC
Confidence            345688999988888999999999999999999999888754