Citrus Sinensis ID: 036421

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420--

MALATTTSSLLSSKSLMHHRRSLLPSSGRSVTALKPISAVHSTDPANTKTVSTKWTPDSWRNKKALQIPEYPNKAELDSVLDTLSSFPPIVFAGESRKLEDRLGQAALGNAFLLMGGDCAESFKEFNANNIRDTFRVLLQMSVVLMFGGQMPVIKVGRMAGQFAKPRSDPFEEKNGVKLPSYRGDNVNGDAFDPQSRIPDPHRMIRAYSQSVATLNLLRAFATGGYAAMQRVAHWNLDFTDHSEQGDRYQELANRVDEAIGFMAAAGLTANHPIMTSTEFWTSHECLLLPYEQALTREDSTSGLYYDCSAHMVWVGERTRQLDGAHVEFLRGVANPLGIKVSNKMDPKELVRLIVILNPKNKPGRITVIVRMGAENMRVKLPHLIRAVRNAGQIVTWVSDPMHGNTIKAPSGLKTRSFDAIR

cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcccEEEEEccccccccccccHHHHHHHHHHHHHHHHHHHHcccccEEEEccccccccccccccccccccEEccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccEEEcccccccccccccccccccccccccccccccEEcccccccccHHHHHHHHcccccEEEEcccccHHHHHHHHHHHccccccccEEEEEcccHHHHHHHcHHHHHHHHHccccEEEEccccccccEEcccccccccccccc

cccccccccccccccccccccccccccccccccccccccEcccccccccccccccccccHHccccccccccccHHHHHHHHHHHHccccEEEHHHHHHHHHHHHHHHcccEEEEccccHHHHHHHccHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEcccccccccccccEccccEccccccccEccccccHHHccccHHHHHHHHHHHHHHHHHHHHHHcccHHcHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEccHHHHHccHHHHHHccccccccccccccEEEEEccccccccccEEEEEcccccccEEEEcccccHHHHHHHHHHHccccccccEEEEEEccHHHHHHHcHHHHHHHHHcccEEEEEEcccccccEEcccccccccHHccc

MALATTTSSLLSSKSLMHHRrsllpssgrsvtalkpisavhstdpantktvstkwtpdswrnkkalqipeypnkaeLDSVLdtlssfppivfageSRKLEDRLGQAALGNAFLLMGGDCAESFKEFNANNIRDTFRVLLQMSVVLMfggqmpvikvgrmagqfakprsdpfeekngvklpsyrgdnvngdafdpqsripdphrMIRAYSQSVATLNLLRAFATGGYAAMQRVAhwnldftdhseqgdRYQELANRVDEAIGFMAAagltanhpimtstefwtsheclllpyeqaltredstsglyydcsahMVWVGERTRQLDGAHVEFLRGVanplgikvsnkmdpkELVRLIVIlnpknkpgrITVIVRMGAENMRVKLPHLIRAVRNAGQIVtwvsdpmhgntikapsglktrsfdair

malatttssllssksLMHHRRsllpssgrsvTALKpisavhstdpantktvstkwtpdswrnKKALQIPEYPNKAELDSVLDTLSSFPPIVFAGESRKLEDRLGQAALGNAFLLMGGDCAESFKEFNANNIRDTFRVLLQMSVVLMFGGQMPVIKVGRMAGQfakprsdpfeekngvklpsyrgdnvngdAFDPQSRIPDPHRMIRAYSQSVATLNLLRAFATGGYAAMQRVAHWNLDFTDHSEQGDRYQELANRVDEAIGFMAAAGLTANHPIMTSTEFWTSHECLLLPYEQALTREDSTSGLYYDCSAHMVWVGERTRQLDGAHVEFLRgvanplgikvsnkmdpkELVRLIvilnpknkpgrITVIVRMGAENMRVKLPHLIRAVRNAGQIVtwvsdpmhgntikapsglktrsfdair

malatttssllsskslmhhrrsllPSSGRSVTALKPISAVHSTDPANTKTVSTKWTPDSWRNKKALQIPEYPNKAELDSVLDTLSSFPPIVFAGESRKLEDRLGQAALGNAFLLMGGDCAESFKEFNANNIRDTFRVLLQMSVVLMFGGQMPVIKVGRMAGQFAKPRSDPFEEKNGVKLPSYRGDNVNGDAFDPQSRIPDPHRMIRAYSQSVATLNLLRAFATGGYAAMQRVAHWNLDFTDHSEQGDRYQELANRVDEAIGFMAAAGLTANHPIMTSTEFWTSHECLLLPYEQALTREDSTSGLYYDCSAHMVWVGERTRQLDGAHVEFLRGVANPLGIKVSNKMDPKELVRLIVILNPKNKPGRITVIVRMGAENMRVKLPHLIRAVRNAGQIVTWVSDPMHGNTIKAPSGLKTRSFDAIR

***************************************************************************ELDSVLDTLSSFPPIVFAGESRKLEDRLGQAALGNAFLLMGGDCAESFKEFNANNIRDTFRVLLQMSVVLMFGGQMPVIKVGRMAG******************************************MIRAYSQSVATLNLLRAFATGGYAAMQRVAHWNLDFTDHSEQGDRYQELANRVDEAIGFMAAAGLTANHPIMTSTEFWTSHECLLLPYEQALTREDSTSGLYYDCSAHMVWVGERTRQLDGAHVEFLRGVANPLGIKVSNKMDPKELVRLIVILNPKNKPGRITVIVRMGAENMRVKLPHLIRAVRNAGQIVTWVSDP*********************

***********************************************************WRNKKALQIPEYPNKAELDSVLDTLSSFPPIVFAGESRKLEDRLGQAALGNAFLLMGGDCAESFKEFNANNIRDTFRVLLQMSVVLMFGGQMPVIKVGRMAGQFAK**********GVKLPSYRGDNVNGDAFDPQSRIPDPHRMIRAYSQSVATLNLLRAFATGGYAAMQRVAHWNLDFTDHSEQGDRYQELANRVDEAIGFMAAAGLTANHPIMTSTEFWTSHECLLLPYEQALTREDSTSGLYYDCSAHMVWVGERTRQLDGAHVEFLRGVANPLGIKVSNKMDPKELVRLIVILNPKNKPGRITVIVRMGAENMRVKLPHLIRAVRNAGQIVTWVSDPMHGNTIKAPSGLKTRSFD*I*

*********LLSSKSLMHHRRSLLPSSGRSVTALKPISAVHS**************PDSWRNKKALQIPEYPNKAELDSVLDTLSSFPPIVFAGESRKLEDRLGQAALGNAFLLMGGDCAESFKEFNANNIRDTFRVLLQMSVVLMFGGQMPVIKVGRMAGQFAKPRSDPFEEKNGVKLPSYRGDNVNGDAFDPQSRIPDPHRMIRAYSQSVATLNLLRAFATGGYAAMQRVAHWNLDFTDHSEQGDRYQELANRVDEAIGFMAAAGLTANHPIMTSTEFWTSHECLLLPYEQALTREDSTSGLYYDCSAHMVWVGERTRQLDGAHVEFLRGVANPLGIKVSNKMDPKELVRLIVILNPKNKPGRITVIVRMGAENMRVKLPHLIRAVRNAGQIVTWVSDPMHGNTIKAPSGLKTRSFDAIR

*********************************************************DSWRNKKALQIPEYPNKAELDSVLDTLSSFPPIVFAGESRKLEDRLGQAALGNAFLLMGGDCAESFKEFNANNIRDTFRVLLQMSVVLMFGGQMPVIKVGRMAGQFAKPRSDPFEEKNGVKLPSYRGDNVNGDAFDPQSRIPDPHRMIRAYSQSVATLNLLRAFATGGYAAMQRVAHWNLDFTDHSEQGDRYQELANRVDEAIGFMAAAGLTANHPIMTSTEFWTSHECLLLPYEQALTREDSTSGLYYDCSAHMVWVGERTRQLDGAHVEFLRGVANPLGIKVSNKMDPKELVRLIVILNPKNKPGRITVIVRMGAENMRVKLPHLIRAVRNAGQIVTWVSDPMHGNTIKAPSGLKTRS*****

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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		422	2.2.26 [Sep-21-2011]
Q00218		507	Phospho-2-dehydro-3-deoxy	no	no	0.971	0.808	0.806	0.0
P37215		511	Phospho-2-dehydro-3-deoxy	N/A	no	0.945	0.780	0.802	0.0
P21357		538	Phospho-2-dehydro-3-deoxy	N/A	no	0.997	0.782	0.730	0.0
P27608		542	Phospho-2-dehydro-3-deoxy	N/A	no	0.971	0.756	0.744	0.0
P37216		541	Phospho-2-dehydro-3-deoxy	N/A	no	0.997	0.778	0.728	0.0
P37822		511	Phospho-2-dehydro-3-deoxy	N/A	no	0.943	0.778	0.797	0.0
P29976		525	Phospho-2-dehydro-3-deoxy	no	no	0.992	0.798	0.718	0.0
Q75LR2		554	Phospho-2-dehydro-3-deoxy	no	no	0.886	0.675	0.813	0.0
Q75W16		539	Phospho-2-dehydro-3-deoxy	yes	no	0.917	0.717	0.761	0.0
A0MH68		493	Probable phospho-2-dehydr	N/A	no	0.945	0.809	0.617	1e-144

>sp\|Q00218\|AROG_ARATH Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic OS=Arabidopsis thaliana GN=DHS2 PE=2 SV=2	Back alignment and function desciption

 Score =  716 bits (1847), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/418 (80%), Positives = 377/418 (90%), Gaps = 8/418 (1%)

Query: 8   SSLLSSKSLMHHRRSLLPSSGRSVTALKPISAVHSTDP---ANTKTVSTKWTPDSWRNKK 64
           SS L++KS + +R +      R   +  P+ AVHSTDP     + + S KW+ +SW++KK
Sbjct: 7   SSPLTTKSFLPYRHA-----PRRPISFSPVFAVHSTDPKKSTQSASASVKWSLESWKSKK 61

Query: 65  ALQIPEYPNKAELDSVLDTLSSFPPIVFAGESRKLEDRLGQAALGNAFLLMGGDCAESFK 124
           ALQ+P+YP++ ++DSVL TLSSFPPIVFAGE+RKLED+LGQAA+G AF+L GGDCAESFK
Sbjct: 62  ALQLPDYPDQKDVDSVLQTLSSFPPIVFAGEARKLEDKLGQAAMGQAFMLQGGDCAESFK 121

Query: 125 EFNANNIRDTFRVLLQMSVVLMFGGQMPVIKVGRMAGQFAKPRSDPFEEKNGVKLPSYRG 184
           EFNANNIRDTFRVLLQM VVLMFGGQ+PVIKVGRMAGQFAKPRSDPFEEK+GVKLPSYRG
Sbjct: 122 EFNANNIRDTFRVLLQMGVVLMFGGQLPVIKVGRMAGQFAKPRSDPFEEKDGVKLPSYRG 181

Query: 185 DNVNGDAFDPQSRIPDPHRMIRAYSQSVATLNLLRAFATGGYAAMQRVAHWNLDFTDHSE 244
           DN+NGDAFD +SRIPDPHRM+RAY+QSVATLNLLRAFATGGYAAMQRV+ WNLDFT HSE
Sbjct: 182 DNINGDAFDEKSRIPDPHRMVRAYTQSVATLNLLRAFATGGYAAMQRVSQWNLDFTQHSE 241

Query: 245 QGDRYQELANRVDEAIGFMAAAGLTANHPIMTSTEFWTSHECLLLPYEQALTREDSTSGL 304
           QGDRY+ELANRVDEA+GFM AAGLT+ HPIMT+TEFWTSHECLLLPYEQALTREDSTSGL
Sbjct: 242 QGDRYRELANRVDEALGFMGAAGLTSAHPIMTTTEFWTSHECLLLPYEQALTREDSTSGL 301

Query: 305 YYDCSAHMVWVGERTRQLDGAHVEFLRGVANPLGIKVSNKMDPKELVRLIVILNPKNKPG 364
           YYDCSAHM+WVGERTRQLDGAHVEFLRG+ANPLGIKVS+KM P ELV+LI ILNP+NKPG
Sbjct: 302 YYDCSAHMLWVGERTRQLDGAHVEFLRGIANPLGIKVSDKMVPSELVKLIEILNPQNKPG 361

Query: 365 RITVIVRMGAENMRVKLPHLIRAVRNAGQIVTWVSDPMHGNTIKAPSGLKTRSFDAIR 422
           RITVIVRMGAENMRVKLP+LIRAVR AGQIVTWVSDPMHGNTI AP GLKTRSFDAIR
Sbjct: 362 RITVIVRMGAENMRVKLPNLIRAVRGAGQIVTWVSDPMHGNTIMAPGGLKTRSFDAIR 419

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: 5EC: 4

>sp\|P37215\|AROF_SOLLC Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic OS=Solanum lycopersicum PE=2 SV=1	Back alignment and function description

>sp\|P21357\|AROF_SOLTU Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic OS=Solanum tuberosum GN=SHKA PE=1 SV=2	Back alignment and function description

>sp\|P27608\|AROF_TOBAC Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic OS=Nicotiana tabacum GN=DHAPS-1 PE=2 SV=1	Back alignment and function description

>sp\|P37216\|AROG_SOLLC Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic OS=Solanum lycopersicum PE=2 SV=1	Back alignment and function description

>sp\|P37822\|AROG_SOLTU Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic OS=Solanum tuberosum GN=SHKB PE=2 SV=1	Back alignment and function description

>sp\|P29976\|AROF_ARATH Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic OS=Arabidopsis thaliana GN=DHS1 PE=2 SV=2	Back alignment and function description

>sp\|Q75LR2\|AROF_ORYSJ Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic OS=Oryza sativa subsp. japonica GN=DAHPS1 PE=2 SV=2	Back alignment and function description

>sp\|Q75W16\|AROG_ORYSJ Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic OS=Oryza sativa subsp. japonica GN=DAHPS2 PE=2 SV=1	Back alignment and function description

>sp\|A0MH68\|AROF_CATRO Probable phospho-2-dehydro-3-deoxyheptonate aldolase, chloroplastic OS=Catharanthus roseus GN=DHS1 PE=2 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		422
297802656		505	3-deoxy-D-arabino-heptulosonate 7-phosph	0.983	0.821	0.803	0.0
145334213		432	phospho-2-dehydro-3-deoxyheptonate aldol	0.971	0.949	0.806	0.0
15234217		507	phospho-2-dehydro-3-deoxyheptonate aldol	0.971	0.808	0.806	0.0
449438211		515	PREDICTED: phospho-2-dehydro-3-deoxyhept	0.990	0.811	0.803	0.0
166690		507	3-deoxy-D-arabino-heptulosonate 7-phosph	0.971	0.808	0.803	0.0
21593248		507	2-dehydro-3-deoxyphosphoheptonate aldola	0.971	0.808	0.803	0.0
2398679		535	3-deoxy-D-arabino-heptulosonate 7-phosph	1.0	0.788	0.748	0.0
2398681		513	3-deoxy-D-arabino-heptulosonate 7-phosph	0.926	0.762	0.841	0.0
356500707		532	PREDICTED: phospho-2-dehydro-3-deoxyhept	0.997	0.791	0.756	0.0
224063263		531	2-dehydro-3-deoxyphosphoheptonate aldola	0.988	0.785	0.764	0.0

>gi\|297802656\|ref\|XP_002869212.1\| 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase [Arabidopsis lyrata subsp. lyrata] gi\|297315048\|gb\|EFH45471.1\| 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

 Score =  718 bits (1853), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/423 (80%), Positives = 376/423 (88%), Gaps = 8/423 (1%)

Query: 3   LATTTSSLLSSKSLMHHRRSLLPSSGRSVTALKPISAVHSTDP---ANTKTVSTKWTPDS 59
           L    SS L++KS + +R +      R   +  P+ A+HSTDP     + + S KW+ DS
Sbjct: 2   LTLNASSPLTTKSFLPYRHA-----PRRPISFSPVFAIHSTDPKKSTQSASASAKWSIDS 56

Query: 60  WRNKKALQIPEYPNKAELDSVLDTLSSFPPIVFAGESRKLEDRLGQAALGNAFLLMGGDC 119
           W++ KALQ+PEYP++ +LDSVL TLSSFPPIVFAGE+RKLED+LGQAA+G AF+L GGDC
Sbjct: 57  WKSLKALQLPEYPDQKDLDSVLQTLSSFPPIVFAGEARKLEDKLGQAAMGQAFMLQGGDC 116

Query: 120 AESFKEFNANNIRDTFRVLLQMSVVLMFGGQMPVIKVGRMAGQFAKPRSDPFEEKNGVKL 179
           AESFKEFNANNIRDTFRVLLQM VVLMFGGQ+PVIKVGRMAGQFAKPRSDPFEEK+GVKL
Sbjct: 117 AESFKEFNANNIRDTFRVLLQMGVVLMFGGQLPVIKVGRMAGQFAKPRSDPFEEKDGVKL 176

Query: 180 PSYRGDNVNGDAFDPQSRIPDPHRMIRAYSQSVATLNLLRAFATGGYAAMQRVAHWNLDF 239
           PSYRGDN+NGDAFD +SRIPDPHRM+RAY+QSVATLNLLRAFATGGYAAMQRV+ WNLDF
Sbjct: 177 PSYRGDNINGDAFDEKSRIPDPHRMVRAYTQSVATLNLLRAFATGGYAAMQRVSQWNLDF 236

Query: 240 TDHSEQGDRYQELANRVDEAIGFMAAAGLTANHPIMTSTEFWTSHECLLLPYEQALTRED 299
           T HSEQGDRY+ELANRVDEA+GFM AAGLT  HPIMT+TEFWTSHECLLLPYEQALTRED
Sbjct: 237 TQHSEQGDRYRELANRVDEALGFMGAAGLTNAHPIMTTTEFWTSHECLLLPYEQALTRED 296

Query: 300 STSGLYYDCSAHMVWVGERTRQLDGAHVEFLRGVANPLGIKVSNKMDPKELVRLIVILNP 359
           STSGLYYDCSAHM+WVGERTRQLDGAHVEFLRG+ANPLGIKVS+KM P ELVRLI ILNP
Sbjct: 297 STSGLYYDCSAHMLWVGERTRQLDGAHVEFLRGIANPLGIKVSDKMVPSELVRLIEILNP 356

Query: 360 KNKPGRITVIVRMGAENMRVKLPHLIRAVRNAGQIVTWVSDPMHGNTIKAPSGLKTRSFD 419
           +NKPGRITVIVRMGAENMRVKLP+LIRAVR AGQIVTWVSDPMHGNTI AP GLKTRSFD
Sbjct: 357 QNKPGRITVIVRMGAENMRVKLPNLIRAVRGAGQIVTWVSDPMHGNTIMAPGGLKTRSFD 416

Query: 420 AIR 422
           AIR
Sbjct: 417 AIR 419

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|145334213\|ref\|NP_001078487.1\| phospho-2-dehydro-3-deoxyheptonate aldolase 2 [Arabidopsis thaliana] gi\|332660838\|gb\|AEE86238.1\| phospho-2-dehydro-3-deoxyheptonate aldolase 2 [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi|15234217|ref|NP_195077.1| phospho-2-dehydro-3-deoxyheptonate aldolase 2 [Arabidopsis thaliana] gi|21264400|sp|Q00218.2|AROG_ARATH RecName: Full=Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic; AltName: Full=3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 2; AltName: Full=DAHP synthase 2; AltName: Full=Phospho-2-keto-3-deoxyheptonate aldolase 2; Flags: Precursor gi|13605635|gb|AAK32811.1|AF361798_1 AT4g33510/F17M5_270 [Arabidopsis thaliana] gi|4490318|emb|CAB38809.1| 2-dehydro-3-deoxyphosphoheptonate aldolase [Arabidopsis thaliana] gi|7270299|emb|CAB80068.1| 2-dehydro-3-deoxyphosphoheptonate aldolase [Arabidopsis thaliana] gi|21700887|gb|AAM70567.1| AT4g33510/F17M5_270 [Arabidopsis thaliana] gi|332660837|gb|AEE86237.1| phospho-2-dehydro-3-deoxyheptonate aldolase 2 [Arabidopsis thaliana]

Back alignment and taxonomy information

>gi\|449438211\|ref\|XP_004136883.1\| PREDICTED: phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic-like [Cucumis sativus] gi\|449478853\|ref\|XP_004155435.1\| PREDICTED: phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|166690\|gb\|AAA32785.1\| 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|21593248\|gb\|AAM65197.1\| 2-dehydro-3-deoxyphosphoheptonate aldolase [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|2398679\|emb\|CAA75092.1\| 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase [Morinda citrifolia]	Back alignment and taxonomy information

>gi\|2398681\|emb\|CAA75093.1\| 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase [Morinda citrifolia]	Back alignment and taxonomy information

>gi\|356500707\|ref\|XP_003519173.1\| PREDICTED: phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic-like [Glycine max]	Back alignment and taxonomy information

>gi\|224063263\|ref\|XP_002301067.1\| 2-dehydro-3-deoxyphosphoheptonate aldolase/ 3-deoxy-d-arabino-heptulosonate 7-phosphate synthetase [Populus trichocarpa] gi\|222842793\|gb\|EEE80340.1\| 2-dehydro-3-deoxyphosphoheptonate aldolase/ 3-deoxy-d-arabino-heptulosonate 7-phosphate synthetase [Populus trichocarpa]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		422
TAIR\|locus:2005526		507	DHS2 "3-deoxy-d-arabino-heptul	0.933	0.777	0.833	6.8e-182
TAIR\|locus:2009547		527	AT1G22410 [Arabidopsis thalian	0.898	0.719	0.820	5.6e-171
TAIR\|locus:2005525		525	DHS1 "3-deoxy-D-arabino-heptul	0.940	0.756	0.759	4.1e-168
TIGR_CMR\|SPO_1942		465	SPO_1942 "3-deoxy-7-phosphohep	0.872	0.791	0.567	1.3e-109
TIGR_CMR\|CJE_0816		446	CJE_0816 "3-deoxy-7-phosphohep	0.867	0.820	0.524	4.7e-103
ASPGD\|ASPL0000049433		482	AN1673 [Emericella nidulans (t	0.573	0.502	0.440	6.4e-85
UNIPROTKB\|O53512		462	aroG "Phospho-2-dehydro-3-deox	0.893	0.816	0.434	1.8e-78
UNIPROTKB\|A0R033		464	aroG "Phospho-2-dehydro-3-deox	0.845	0.769	0.445	7.1e-77
UNIPROTKB\|G4N683		466	MGG_08596 "Phospho-2-dehydro-3	0.860	0.778	0.433	1.5e-76

TAIR\|locus:2005526 DHS2 "3-deoxy-d-arabino-heptulosonate 7-phosphate synthase" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1765 (626.4 bits), Expect = 6.8e-182, P = 6.8e-182
 Identities = 331/397 (83%), Positives = 366/397 (92%)

Query:    29 RSVTALKPISAVHSTDP---ANTKTVSTKWTPDSWRNKKALQIPEYPNKAELDSVLDTLS 85
             R   +  P+ AVHSTDP     + + S KW+ +SW++KKALQ+P+YP++ ++DSVL TLS
Sbjct:    23 RRPISFSPVFAVHSTDPKKSTQSASASVKWSLESWKSKKALQLPDYPDQKDVDSVLQTLS 82

Query:    86 SFPPIVFAGESRKLEDRLGQAALGNAFLLMGGDCAESFKEFNANNIRDTFRVLLQMSVVL 145
             SFPPIVFAGE+RKLED+LGQAA+G AF+L GGDCAESFKEFNANNIRDTFRVLLQM VVL
Sbjct:    83 SFPPIVFAGEARKLEDKLGQAAMGQAFMLQGGDCAESFKEFNANNIRDTFRVLLQMGVVL 142

Query:   146 MFGGQMPVIKVGRMAGQFAKPRSDPFEEKNGVKLPSYRGDNVNGDAFDPQSRIPDPHRMI 205
             MFGGQ+PVIKVGRMAGQFAKPRSDPFEEK+GVKLPSYRGDN+NGDAFD +SRIPDPHRM+
Sbjct:   143 MFGGQLPVIKVGRMAGQFAKPRSDPFEEKDGVKLPSYRGDNINGDAFDEKSRIPDPHRMV 202

Query:   206 RAYSQSVATLNLLRAFATGGYAAMQRVAHWNLDFTDHSEQGDRYQELANRVDEAIGFMAA 265
             RAY+QSVATLNLLRAFATGGYAAMQRV+ WNLDFT HSEQGDRY+ELANRVDEA+GFM A
Sbjct:   203 RAYTQSVATLNLLRAFATGGYAAMQRVSQWNLDFTQHSEQGDRYRELANRVDEALGFMGA 262

Query:   266 AGLTANHPIMTSTEFWTSHECLLLPYEQALTREDSTSGLYYDCSAHMVWVGERTRQLDGA 325
             AGLT+ HPIMT+TEFWTSHECLLLPYEQALTREDSTSGLYYDCSAHM+WVGERTRQLDGA
Sbjct:   263 AGLTSAHPIMTTTEFWTSHECLLLPYEQALTREDSTSGLYYDCSAHMLWVGERTRQLDGA 322

Query:   326 HVEFLRGVANPLGIKVSNKMDPKELVRLIVILNPKNKPGRITVIVRMGAENMRVKLPHLI 385
             HVEFLRG+ANPLGIKVS+KM P ELV+LI ILNP+NKPGRITVIVRMGAENMRVKLP+LI
Sbjct:   323 HVEFLRGIANPLGIKVSDKMVPSELVKLIEILNPQNKPGRITVIVRMGAENMRVKLPNLI 382

Query:   386 RAVRNAGQIVTWVSDPMHGNTIKAPSGLKTRSFDAIR 422
             RAVR AGQIVTWVSDPMHGNTI AP GLKTRSFDAIR
Sbjct:   383 RAVRGAGQIVTWVSDPMHGNTIMAPGGLKTRSFDAIR 419

GO:0003849 "3-deoxy-7-phosphoheptulonate synthase activity" evidence=IEA;IGI

GO:0009073 "aromatic amino acid family biosynthetic process" evidence=IEA;TAS

GO:0009507 "chloroplast" evidence=ISM;IDA;TAS

GO:0009423 "chorismate biosynthetic process" evidence=IGI

GO:0005515 "protein binding" evidence=IPI

GO:0009534 "chloroplast thylakoid" evidence=IDA

TAIR\|locus:2009547 AT1G22410 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2005525 DHS1 "3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TIGR_CMR\|SPO_1942 SPO_1942 "3-deoxy-7-phosphoheptulonate synthase" [Ruegeria pomeroyi DSS-3 (taxid:246200)]	Back alignment and assigned GO terms

TIGR_CMR\|CJE_0816 CJE_0816 "3-deoxy-7-phosphoheptulonate synthase" [Campylobacter jejuni RM1221 (taxid:195099)]	Back alignment and assigned GO terms

ASPGD\|ASPL0000049433 AN1673 [Emericella nidulans (taxid:162425)]	Back alignment and assigned GO terms

UNIPROTKB\|O53512 aroG "Phospho-2-dehydro-3-deoxyheptonate aldolase AroG" [Mycobacterium tuberculosis (taxid:1773)]	Back alignment and assigned GO terms

UNIPROTKB\|A0R033 aroG "Phospho-2-dehydro-3-deoxyheptonate aldolase AroG" [Mycobacterium smegmatis str. MC2 155 (taxid:246196)]	Back alignment and assigned GO terms

UNIPROTKB\|G4N683 MGG_08596 "Phospho-2-dehydro-3-deoxyheptonate aldolase" [Magnaporthe oryzae 70-15 (taxid:242507)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
A0MH68	AROF_CATRO	2, ., 5, ., 1, ., 5, 4	0.6173	0.9454	0.8093	N/A	no
P80574	AROF_STRCO	2, ., 5, ., 1, ., 5, 4	0.5093	0.8767	0.8222	yes	no
P27608	AROF_TOBAC	2, ., 5, ., 1, ., 5, 4	0.7449	0.9715	0.7564	N/A	no
P37215	AROF_SOLLC	2, ., 5, ., 1, ., 5, 4	0.8024	0.9454	0.7808	N/A	no
P37216	AROG_SOLLC	2, ., 5, ., 1, ., 5, 4	0.7286	0.9976	0.7781	N/A	no
Q00218	AROG_ARATH	2, ., 5, ., 1, ., 5, 4	0.8062	0.9715	0.8086	no	no
P37822	AROG_SOLTU	2, ., 5, ., 1, ., 5, 4	0.7970	0.9431	0.7788	N/A	no
P21357	AROF_SOLTU	2, ., 5, ., 1, ., 5, 4	0.7308	0.9976	0.7825	N/A	no
Q75W16	AROG_ORYSJ	2, ., 5, ., 1, ., 5, 4	0.7615	0.9170	0.7179	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	2.5.1.54	0.991
3rd Layer	2.5.1	0.976

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		422
PLN02291		474	PLN02291, PLN02291, phospho-2-dehydro-3-deoxyhepto	0.0
pfam01474		437	pfam01474, DAHP_synth_2, Class-II DAHP synthetase	0.0
TIGR01358		443	TIGR01358, DAHP_synth_II, 3-deoxy-7-phosphoheptulo	0.0
COG3200		445	COG3200, AroG, 3-deoxy-D-arabino-heptulosonate 7-p	0.0

>gnl\|CDD\|177928 PLN02291, PLN02291, phospho-2-dehydro-3-deoxyheptonate aldolase	Back alignment and domain information

 Score =  834 bits (2156), Expect = 0.0
 Identities = 323/387 (83%), Positives = 357/387 (92%), Gaps = 4/387 (1%)

Query: 40  VHSTDPANTKTVS----TKWTPDSWRNKKALQIPEYPNKAELDSVLDTLSSFPPIVFAGE 95
           VH+ +P+ T   S     KW+PDSWR+KKALQ+PEYP++AEL+ VL TL +FPP+VFAGE
Sbjct: 1   VHAAEPSKTPVSSAGGPKKWSPDSWRSKKALQLPEYPDQAELEEVLKTLEAFPPLVFAGE 60

Query: 96  SRKLEDRLGQAALGNAFLLMGGDCAESFKEFNANNIRDTFRVLLQMSVVLMFGGQMPVIK 155
           +R LE+RL +AA+G AFLL GGDCAESFKEFNANNIRDTFRVLLQM VVLMFGGQMPV+K
Sbjct: 61  ARSLEERLAEAAMGRAFLLQGGDCAESFKEFNANNIRDTFRVLLQMGVVLMFGGQMPVVK 120

Query: 156 VGRMAGQFAKPRSDPFEEKNGVKLPSYRGDNVNGDAFDPQSRIPDPHRMIRAYSQSVATL 215
           VGRMAGQFAKPRSDPFEEK+GVKLPSYRGDN+NGDAFD +SR PDP RM+RAYSQS ATL
Sbjct: 121 VGRMAGQFAKPRSDPFEEKDGVKLPSYRGDNINGDAFDEKSRRPDPQRMVRAYSQSAATL 180

Query: 216 NLLRAFATGGYAAMQRVAHWNLDFTDHSEQGDRYQELANRVDEAIGFMAAAGLTANHPIM 275
           NLLRAFATGGYAAMQRV  WNLDFT+HSEQGDRY+ELA+RVDEA+GFMAA GLT +HPIM
Sbjct: 181 NLLRAFATGGYAAMQRVTQWNLDFTEHSEQGDRYRELAHRVDEALGFMAACGLTTDHPIM 240

Query: 276 TSTEFWTSHECLLLPYEQALTREDSTSGLYYDCSAHMVWVGERTRQLDGAHVEFLRGVAN 335
           T+TEFWTSHECLLLPYEQALTREDSTSGLYYDCSAHM+WVGERTRQLDGAHVEFLRGVAN
Sbjct: 241 TTTEFWTSHECLLLPYEQALTREDSTSGLYYDCSAHMLWVGERTRQLDGAHVEFLRGVAN 300

Query: 336 PLGIKVSNKMDPKELVRLIVILNPKNKPGRITVIVRMGAENMRVKLPHLIRAVRNAGQIV 395
           PLGIKVS+KMDP+ELV+LI ILNP+NKPGR+T+IVRMGAE +RVKLPHLIRAVR AGQIV
Sbjct: 301 PLGIKVSDKMDPEELVKLIEILNPQNKPGRLTIIVRMGAEKLRVKLPHLIRAVRRAGQIV 360

Query: 396 TWVSDPMHGNTIKAPSGLKTRSFDAIR 422
           TWVSDPMHGNTIKAPSGLKTR FDAIR
Sbjct: 361 TWVSDPMHGNTIKAPSGLKTRPFDAIR 387

Length = 474

>gnl\|CDD\|216520 pfam01474, DAHP_synth_2, Class-II DAHP synthetase family	Back alignment and domain information

>gnl\|CDD\|130425 TIGR01358, DAHP_synth_II, 3-deoxy-7-phosphoheptulonate synthase, class II	Back alignment and domain information

>gnl\|CDD\|225741 COG3200, AroG, 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		422
PLN02291		474	phospho-2-dehydro-3-deoxyheptonate aldolase	100.0
TIGR01358		443	DAHP_synth_II 3-deoxy-7-phosphoheptulonate synthas	100.0
PF01474		439	DAHP_synth_2: Class-II DAHP synthetase family; Int	100.0
COG3200		445	AroG 3-deoxy-D-arabino-heptulosonate 7-phosphate (	100.0
PLN03033		290	2-dehydro-3-deoxyphosphooctonate aldolase; Provisi	96.45
PRK12755		353	phospho-2-dehydro-3-deoxyheptonate aldolase; Provi	94.03
PF00793		270	DAHP_synth_1: DAHP synthetase I family; InterPro:	93.94
TIGR00034		344	aroFGH phospho-2-dehydro-3-deoxyheptonate aldolase	93.93
PRK09261		349	phospho-2-dehydro-3-deoxyheptonate aldolase; Valid	93.59
PRK13398		266	3-deoxy-7-phosphoheptulonate synthase; Provisional	92.32
KOG2599		308	consensus Pyridoxal/pyridoxine/pyridoxamine kinase	91.58
PRK08673		335	3-deoxy-7-phosphoheptulonate synthase; Reviewed	89.6
PRK13396		352	3-deoxy-7-phosphoheptulonate synthase; Provisional	89.49
COG2240		281	PdxK Pyridoxal/pyridoxine/pyridoxamine kinase [Coe	88.41
PRK05756		286	pyridoxamine kinase; Validated	87.49
TIGR00687		286	pyridox_kin pyridoxal kinase. ThiD and related pro	86.25
PRK12822		356	phospho-2-dehydro-3-deoxyheptonate aldolase; Provi	81.16

>PLN02291 phospho-2-dehydro-3-deoxyheptonate aldolase	Back alignment and domain information

Probab=100.00  E-value=5e-179  Score=1354.66  Aligned_cols=370  Identities=86%  Similarity=1.390  Sum_probs=365.4

Q ss_pred             CCCCCCccccCccccCCCCCCHHHHHHHHHHhccCCCccCHHHHHHHHHHHHHHhCCCeeEEecCCccchhhhcChhhHH
Q 036421           53 TKWTPDSWRNKKALQIPEYPNKAELDSVLDTLSSFPPIVFAGESRKLEDRLGQAALGNAFLLMGGDCAESFKEFNANNIR  132 (422)
Q Consensus        53 ~~Wsp~sWr~~pa~QqP~ypD~~~l~~v~~~L~~lPPLV~~~Ei~~Lr~~La~vA~G~aFlLQgGDCAEsF~e~~~~~I~  132 (422)
                      ..|+|+|||++||+|||+|||+++|++|+++|+++||||+++||++||++||+||+|+|||||||||||+|+||++++|+
T Consensus        18 ~~W~p~sWr~~pa~QqP~y~D~~~l~~v~~~L~~~PPLV~a~Ei~~Lr~~LA~va~G~AFlLQgGDCAE~F~~~~~~~ir   97 (474)
T PLN02291         18 KKWSPDSWRSKKALQLPEYPDQAELEEVLKTLEAFPPLVFAGEARSLEERLAEAAMGRAFLLQGGDCAESFKEFNANNIR   97 (474)
T ss_pred             CCCChhhhhcCccccCCCCCCHHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHHHhcCCeEEEeCCchhhhhhhhCHHHHH
Confidence            34999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHhhcCCCceEEeccccccCCCCCCCcccccCCeecccccCCcCCCCCCCCCCCCCChHHHHHHHHHHH
Q 036421          133 DTFRVLLQMSVVLMFGGQMPVIKVGRMAGQFAKPRSDPFEEKNGVKLPSYRGDNVNGDAFDPQSRIPDPHRMIRAYSQSV  212 (422)
Q Consensus       133 ~k~~~LlqMa~vL~~g~~~PVVkVGRiAGQfAKPRS~~~E~~~G~~LPsYRGD~VNg~ef~~~aR~PDP~Rll~aY~~Sa  212 (422)
                      +|+++|+|||.||+|++++|||||||||||||||||+++|++||++||||||||||+++||+++|+|||+|||+||+||+
T Consensus        98 ~k~~~llqMa~vL~~~~~~PVVkVGRiAGQyAKPRSs~~E~~dGv~LPsYRGD~VN~~e~t~~aR~PDP~Rll~aY~~Sa  177 (474)
T PLN02291         98 DTFRVLLQMGVVLMFGGQMPVVKVGRMAGQFAKPRSDPFEEKDGVKLPSYRGDNINGDAFDEKSRRPDPQRMVRAYSQSA  177 (474)
T ss_pred             HHHHHHHHHHHHHhhcCCCCeEEecccccccCCCCCCCcccCCCEeccccCCccccCcCCCHhhcCCCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCccccccccccccccccCCchhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCccceeecccccccccc
Q 036421          213 ATLNLLRAFATGGYAAMQRVAHWNLDFTDHSEQGDRYQELANRVDEAIGFMAAAGLTANHPIMTSTEFWTSHECLLLPYE  292 (422)
Q Consensus       213 aTLn~lRa~~~gG~adl~~~~~W~~~fv~~s~~~~~y~~~~~~i~~al~Fm~a~G~~~~~~~~~~~~~~tSHEaLlL~YE  292 (422)
                      +|||+||+|.+|||||||++++||++|+++++.+++|++++++|++||+||++||++.+...+++++||||||||||+||
T Consensus       178 atlnllRa~~~gg~adl~~~~~W~~~fv~~~~~~~~y~~la~~i~~al~fm~a~g~~~~~~~l~~~~~yTSHEaLlL~YE  257 (474)
T PLN02291        178 ATLNLLRAFATGGYAAMQRVTQWNLDFTEHSEQGDRYRELAHRVDEALGFMAACGLTTDHPIMTTTEFWTSHECLLLPYE  257 (474)
T ss_pred             HHHHHHHHHhcCCchhhccccccchhhhccCchhhHHHHHHHHHHHHHHHHHHcCCCccccccccCceeechHhhccchh
Confidence            99999999999999999999999999999999999999999999999999999999987546889999999999999999


Q ss_pred             cccccccCCCCCccccCCcceeecccccCCCchhHHHhhhccCCcceeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEecc
Q 036421          293 QALTREDSTSGLYYDCSAHMVWVGERTRQLDGAHVEFLRGVANPLGIKVSNKMDPKELVRLIVILNPKNKPGRITVIVRM  372 (422)
Q Consensus       293 ~altR~d~~~g~~Y~~SaH~lWIGeRTRqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~LnP~~~pGRlTLI~Rm  372 (422)
                      +||||+|+.+|.|||||||||||||||||+|||||||||||+|||||||||+|+||||++||++|||+|+|||||||+||
T Consensus       258 ~altR~d~~~g~~Y~~SaH~lWIGeRTRqlDgAHVef~rgI~NPIGvKvGPs~~pdel~~L~~~LnP~~epGRlTLI~Rm  337 (474)
T PLN02291        258 QALTREDSTSGLYYDCSAHMLWVGERTRQLDGAHVEFLRGVANPLGIKVSDKMDPEELVKLIEILNPQNKPGRLTIIVRM  337 (474)
T ss_pred             hhhhccCCCCCCcccccccccccccccCCCCccHHHHHhcCCCCeeEEECCCCCHHHHHHHHHHhCCCCCCceEEEEecc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChhHHHhhChHHHHHHHHCCCceEEEcCCCCCCcccCCCCcccccCCccC
Q 036421          373 GAENMRVKLPHLIRAVRNAGQIVTWVSDPMHGNTIKAPSGLKTRSFDAIR  422 (422)
Q Consensus       373 Ga~~v~~~LP~LI~AV~~~G~~ViW~cDPMHGNT~~t~~G~KTR~f~~Il  422 (422)
                      ||+||+++||+||+||+++||+|||+||||||||++|++|||||+|++|+
T Consensus       338 Ga~kV~~~LP~Li~aV~~~G~~VvW~cDPMHGNT~~t~~G~KTR~f~~Il  387 (474)
T PLN02291        338 GAEKLRVKLPHLIRAVRRAGQIVTWVSDPMHGNTIKAPSGLKTRPFDAIR  387 (474)
T ss_pred             chHHHHHHHHHHHHHHHHcCCceEEeecCCCCCceeCCCCccCCcHHHHH
Confidence            99999999999999999999999999999999999999999999999985

>TIGR01358 DAHP_synth_II 3-deoxy-7-phosphoheptulonate synthase, class II	Back alignment and domain information

>PF01474 DAHP_synth_2: Class-II DAHP synthetase family; InterPro: IPR002480 Members of the 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthetase family (2	Back alignment and domain information

>COG3200 AroG 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]	Back alignment and domain information

>PLN03033 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional	Back alignment and domain information

>PRK12755 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional	Back alignment and domain information

>PF00793 DAHP_synth_1: DAHP synthetase I family; InterPro: IPR006218 Members of the 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthetase family catalyse the first step in aromatic amino acid biosynthesis from chorismate	Back alignment and domain information

>TIGR00034 aroFGH phospho-2-dehydro-3-deoxyheptonate aldolase	Back alignment and domain information

>PRK09261 phospho-2-dehydro-3-deoxyheptonate aldolase; Validated	Back alignment and domain information

>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional	Back alignment and domain information

>KOG2599 consensus Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme transport and metabolism]	Back alignment and domain information

>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed	Back alignment and domain information

>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional	Back alignment and domain information

>COG2240 PdxK Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme metabolism]	Back alignment and domain information

>PRK05756 pyridoxamine kinase; Validated	Back alignment and domain information

>TIGR00687 pyridox_kin pyridoxal kinase	Back alignment and domain information

>PRK12822 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		422
2w19_A		472	Non-Covalent Complex Between Dahp Synthase And Chor		6e-86
3kgf_A		464	The Structure Of 3-Deoxy-D-Arabino-Heptulosonate 7-		2e-85
3rzi_A		462	The Structure Of 3-Deoxy-D-Arabino-Heptulosonate 7-		2e-85
2b7o_A		464	The Structure Of 3-Deoxy-D-Arabino-Heptulosonate 7-		8e-77

>pdb|2W19|A Chain A, Non-Covalent Complex Between Dahp Synthase And Chorismate Mutase From Mycobacterium Tuberculosis Length = 472

Back alignment and structure

Iteration: 1

Score = 314 bits (804), Expect = 6e-86, Method: Compositional matrix adjust. Identities = 170/399 (42%), Positives = 240/399 (60%), Gaps = 12/399 (3%) Query: 26 SSGRSVTALKPISAVHSTDPANTKTVSTKWTPDSWRNKKALQIPEYPNKAELDSVLDTLS 85 SSG + T PI + S P T + T+ D+ K A Q P +P L ++ L Sbjct: 8 SSGMNWTVDIPIDQLPSLPPLPTD-LRTRL--DAALAKPAAQQPTWPADQAL-AMRTVLE 63 Query: 86 SFPPIVFAGESRKLEDRLGQAALGNAFLLMGGDCAESFKEFNANNIRDTFRVLLQMSVVL 145 S PP+ E +L+++L Q A G AFLL GGDCAE+F + +IR R LLQM+VVL Sbjct: 64 SVPPVTVPSEIVRLQEQLAQVAKGEAFLLQGGDCAETFMDNTEPHIRGNVRALLQMAVVL 123 Query: 146 MFGGQMPVIKVGRMAGQFAKPRSDPFEEKNGVKLPSYRGDNVNGDAFDPQSRIPDPHRMI 205 +G MPV+KV R+AGQ+AKPRS + + + L SYRGD +NG A D +R DP R++ Sbjct: 124 TYGASMPVVKVARIAGQYAKPRS---ADIDALGLRSYRGDMINGFAPDAAAREHDPSRLV 180 Query: 206 RAYSQSVATLNLLRAFATGGYAAMQRVAHWNLDFTDHSEQGDRYQELANRVDEAIGFMAA 265 RAY+ + A +NL+RA + G A++ V WN +F S G RY+ LA +D + FM+A Sbjct: 181 RAYANASAAMNLVRALTSSGLASLHLVHDWNREFVRTSPAGARYEALATEIDRGLRFMSA 240 Query: 266 AGLTANHPIMTSTEFWTSHECLLLPYEQALTR---EDSTSGLYYDCSAHMVWVGERTRQL 322 G+ + + + E + SHE L+L YE+A+ R D +D SAH VW+GERTRQ+ Sbjct: 241 CGVADRN--LQTAEIYASHEALVLDYERAMLRLSDGDDGEPQLFDLSAHTVWIGERTRQI 298 Query: 323 DGAHVEFLRGVANPLGIKVSNKMDPKELVRLIVILNPKNKPGRITVIVRMGAENMRVKLP 382 DGAH+ F + +ANP+G+K+ M P+ V + L+P NKPGR+T++ RMG +R LP Sbjct: 299 DGAHIAFAQVIANPVGVKLGPNMTPELAVEYVERLDPHNKPGRLTLVSRMGNHKVRDLLP 358 Query: 383 HLIRAVRNAGQIVTWVSDPMHGNTIKAPSGLKTRSFDAI 421 ++ V+ G V W DPMHGNT ++ +G KTR FD I Sbjct: 359 PIVEKVQATGHQVIWQCDPMHGNTHESSTGFKTRHFDRI 397

PyMOL of 2w19

>pdb|3KGF|A Chain A, The Structure Of 3-Deoxy-D-Arabino-Heptulosonate 7-Phosphate Synthase From Mycobacterium Tuberculosis Complexed With Phenylalanine And Tryptophan Length = 464

Back alignment and structure

>pdb|3RZI|A Chain A, The Structure Of 3-Deoxy-D-Arabino-Heptulosonate 7-Phosphate Synthase From Mycobacterium Tuberculosis Cocrystallized And Complexed With Phenylalanine And Tryptophan Length = 462

Back alignment and structure

>pdb|2B7O|A Chain A, The Structure Of 3-Deoxy-D-Arabino-Heptulosonate 7-Phosphate Synthase From Mycobacterium Tuberculosis Length = 464

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		422
3rzi_A		462	Probable 3-deoxy-D-arabino-heptulosonate 7-phosph	1e-152
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-06

>3rzi_A Probable 3-deoxy-D-arabino-heptulosonate 7-phosph synthase AROG; DAH7P synthase, shikimate pathway, aromatic biosynthesis; HET: PHE TRP; 1.95A {Mycobacterium tuberculosis} PDB: 3kgf_A* 2b7o_A* 3nud_A* 3nue_A* 3nv8_A* 3pfp_A* 2w19_A 2w1a_A* Length = 462	Back alignment and structure

 Score =  439 bits (1129), Expect = e-152
 Identities = 166/396 (41%), Positives = 234/396 (59%), Gaps = 12/396 (3%)

Query: 30  SVTALKPISAVHSTDPANTKTVSTKWTPDSWRNKKALQIPEYPNKAELDSVLDTLSSFPP 89
           + T   PI  + S  P  T     +   D+   K A Q P +P    L ++   L S PP
Sbjct: 2   NWTVDIPIDQLPSLPPLPT---DLRTRLDAALAKPAAQQPTWPADQAL-AMRTVLESVPP 57

Query: 90  IVFAGESRKLEDRLGQAALGNAFLLMGGDCAESFKEFNANNIRDTFRVLLQMSVVLMFGG 149
           +    E  +L+++L Q A G AFLL GGDCAE+F +    +IR   R LLQM+VVL +G 
Sbjct: 58  VTVPSEIVRLQEQLAQVAKGEAFLLQGGDCAETFMDNTEPHIRGNVRALLQMAVVLTYGA 117

Query: 150 QMPVIKVGRMAGQFAKPRSDPFEEKNGVKLPSYRGDNVNGDAFDPQSRIPDPHRMIRAYS 209
            MPV+KV R+AGQ+AKPRS      + + L SYRGD +NG A D  +R  DP R++RAY+
Sbjct: 118 SMPVVKVARIAGQYAKPRSADI---DALGLRSYRGDMINGFAPDAAAREHDPSRLVRAYA 174

Query: 210 QSVATLNLLRAFATGGYAAMQRVAHWNLDFTDHSEQGDRYQELANRVDEAIGFMAAAGLT 269
            + A +NL+RA  + G A++  V  WN +F   S  G RY+ LA  +D  + FM+A G+ 
Sbjct: 175 NASAAMNLVRALTSSGLASLHLVHDWNREFVRTSPAGARYEALATEIDRGLRFMSACGVA 234

Query: 270 ANHPIMTSTEFWTSHECLLLPYEQALTRE---DSTSGLYYDCSAHMVWVGERTRQLDGAH 326
             +  + + E + SHE L+L YE+A+ R    D      +D SAH VW+GERTRQ+DGAH
Sbjct: 235 DRN--LQTAEIYASHEALVLDYERAMLRLSDGDDGEPQLFDLSAHTVWIGERTRQIDGAH 292

Query: 327 VEFLRGVANPLGIKVSNKMDPKELVRLIVILNPKNKPGRITVIVRMGAENMRVKLPHLIR 386
           + F + +ANP+G+K+   M P+  V  +  L+P NKPGR+T++ RMG   +R  LP ++ 
Sbjct: 293 IAFAQVIANPVGVKLGPNMTPELAVEYVERLDPHNKPGRLTLVSRMGNHKVRDLLPPIVE 352

Query: 387 AVRNAGQIVTWVSDPMHGNTIKAPSGLKTRSFDAIR 422
            V+  G  V W  DPMHGNT ++ +G KTR FD I 
Sbjct: 353 KVQATGHQVIWQCDPMHGNTHESSTGFKTRHFDRIV 388

PyMOL of 3rzi

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		422
3rzi_A		462	Probable 3-deoxy-D-arabino-heptulosonate 7-phosph	100.0
3tqk_A		346	Phospho-2-dehydro-3-deoxyheptonate aldolase; trans	96.89
1n8f_A		350	DAHP synthetase; (beta/alpha)8 barrel, metal bindi	96.7
1of8_A		370	Phospho-2-dehydro-3-deoxyheptonate aldolase, tyros	96.07
3nvt_A		385	3-deoxy-D-arabino-heptulosonate 7-phosphate synth;	90.3
1zco_A		262	2-dehydro-3-deoxyphosphoheptonate aldolase; arabin	88.46
2nwr_A		267	2-dehydro-3-deoxyphosphooctonate aldolase; KDO, KD	84.58
3sz8_A		285	2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgci	81.55

>3rzi_A Probable 3-deoxy-D-arabino-heptulosonate 7-phosph synthase AROG; DAH7P synthase, shikimate pathway, aromatic biosynthesis; HET: PHE TRP; 1.95A {Mycobacterium tuberculosis} SCOP: c.1.10.8 PDB: 3kgf_A* 2b7o_A* 3nud_A* 3nue_A* 3nv8_A* 3pfp_A* 2w19_A 2w1a_A*	Back alignment and structure

Probab=100.00  E-value=5.8e-176  Score=1327.70  Aligned_cols=360  Identities=44%  Similarity=0.773  Sum_probs=353.5

Q ss_pred             CCccccCccccCCCCCCHHHHHHHHHHhccCCCccCHHHHHHHHHHHHHHhCCCeeEEecCCccchhhhcChhhHHhHHH
Q 036421           57 PDSWRNKKALQIPEYPNKAELDSVLDTLSSFPPIVFAGESRKLEDRLGQAALGNAFLLMGGDCAESFKEFNANNIRDTFR  136 (422)
Q Consensus        57 p~sWr~~pa~QqP~ypD~~~l~~v~~~L~~lPPLV~~~Ei~~Lr~~La~vA~G~aFlLQgGDCAEsF~e~~~~~I~~k~~  136 (422)
                      ++|||++|++|||+|| +++|+.|+++|+++|||||++||++||++||+||+|+|||||||||||+|+||++++|++|++
T Consensus        26 ~~sWr~~pa~QqP~yp-~~~l~~v~~~L~~~PPLV~a~Ei~~Lr~~La~va~G~AFlLQGGDCAEsF~~~~~~~ir~k~~  104 (462)
T 3rzi_A           26 LDAALAKPAAQQPTWP-ADQALAMRTVLESVPPVTVPSEIVRLQEQLAQVAKGEAFLLQGGDCAETFMDNTEPHIRGNVR  104 (462)
T ss_dssp             HHHHHTSCCTTCCCCC-HHHHHHHHHHHTTSCCSSCHHHHHHHHHHHHHHHTTSCEEEEEECSSCCSTTCCHHHHHHHHH
T ss_pred             ccchhhCCcccCCCCC-HHHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHHCCCEEEEeCccccCChhhcChHHHHHHHH
Confidence            4799999999999999 999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcCCCceEEeccccccCCCCCCCcccccCCeecccccCCcCCCCCCCCCCCCCChHHHHHHHHHHHHHHH
Q 036421          137 VLLQMSVVLMFGGQMPVIKVGRMAGQFAKPRSDPFEEKNGVKLPSYRGDNVNGDAFDPQSRIPDPHRMIRAYSQSVATLN  216 (422)
Q Consensus       137 ~LlqMa~vL~~g~~~PVVkVGRiAGQfAKPRS~~~E~~~G~~LPsYRGD~VNg~ef~~~aR~PDP~Rll~aY~~SaaTLn  216 (422)
                      +|+|||+||+|++++|||||||||||||||||+++|   |++||||||||||+++||+++|+|||+|||+||++|++|||
T Consensus       105 ~llqMa~vLt~g~~~PVVkvGRiAGQfAKPRSs~~E---Gv~LPsYRGD~VNg~~f~~~aR~PDP~Rll~aY~~SaatlN  181 (462)
T 3rzi_A          105 ALLQMAVVLTYGASMPVVKVARIAGQYAKPRSADID---ALGLRSYRGDMINGFAPDAAAREHDPSRLVRAYANASAAMN  181 (462)
T ss_dssp             HHHHHHHHHHHHHTSCEEEEEECSCCCCCCCSCSBC---TTSSBCCCCTTTSCSSSSHHHHSCCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhCCCCCeEEecccccccCCCCCCCcC---CCcccccCCccccCCCCChhhcCCCHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999   99999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCccccccccccccccccCCchhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCccceeecccccccccccccc
Q 036421          217 LLRAFATGGYAAMQRVAHWNLDFTDHSEQGDRYQELANRVDEAIGFMAAAGLTANHPIMTSTEFWTSHECLLLPYEQALT  296 (422)
Q Consensus       217 ~lRa~~~gG~adl~~~~~W~~~fv~~s~~~~~y~~~~~~i~~al~Fm~a~G~~~~~~~~~~~~~~tSHEaLlL~YE~alt  296 (422)
                      +||+|++|||||||++|+||++||++|+.+++|++++++|++||+||++||++.+  .+.+++||||||||||+||+|||
T Consensus       182 llRa~~~gG~Adl~~~~~W~~~fv~~s~~~~~y~~la~~i~~al~Fm~a~G~~~~--~l~~~~~ytSHEaLlL~YE~alt  259 (462)
T 3rzi_A          182 LVRALTSSGLASLHLVHDWNREFVRTSPAGARYEALATEIDRGLRFMSACGVADR--NLQTAEIYASHEALVLDYERAML  259 (462)
T ss_dssp             HHHHHHHTTTTCHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHTTCCCG--GGSCCCCEEEEECCCHHHHHHTE
T ss_pred             HHHHhccCChhhhhccccchhhhcccChhhhHHHHHHHHHHHHHHHHHHcCCCcc--cccccceeechHhhccchhhhhh
Confidence            9999999999999999999999999999999999999999999999999999977  67899999999999999999999


Q ss_pred             ccc---CCCCCccccCCcceeecccccCCCchhHHHhhhccCCcceeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEeccC
Q 036421          297 RED---STSGLYYDCSAHMVWVGERTRQLDGAHVEFLRGVANPLGIKVSNKMDPKELVRLIVILNPKNKPGRITVIVRMG  373 (422)
Q Consensus       297 R~d---~~~g~~Y~~SaH~lWIGeRTRqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~LnP~~~pGRlTLI~RmG  373 (422)
                      |.|   +.+|.|||||||||||||||||+|||||||||||+|||||||||+|+|+||++||++|||+|+|||||||+|||
T Consensus       260 R~d~~~~~~g~~Y~~SaH~lWIGeRTRqlDgAHVef~rgI~NPIGvKvGP~~~p~elv~L~~~LnP~~epGRlTLI~RmG  339 (462)
T 3rzi_A          260 RLSDGDDGEPQLFDLSAHTVWIGERTRQIDGAHIAFAQVIANPVGVKLGPNMTPELAVEYVERLDPHNKPGRLTLVSRMG  339 (462)
T ss_dssp             EECCC----CCEEETTCSEEEECTTTCCTTSHHHHHHHHCCSCEEEEECTTCCHHHHHHHHHHHCTTCCTTSEEEEECCC
T ss_pred             cccccCCCCCCccccccccceeccccCCCCccHHHHHhcCCCCeeEeECCCCCHHHHHHHHHHhCCCCCCCeEEEEEccC
Confidence            999   88999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHhhChHHHHHHHHCCCceEEEcCCCCCCcccCCCCcccccCCccC
Q 036421          374 AENMRVKLPHLIRAVRNAGQIVTWVSDPMHGNTIKAPSGLKTRSFDAIR  422 (422)
Q Consensus       374 a~~v~~~LP~LI~AV~~~G~~ViW~cDPMHGNT~~t~~G~KTR~f~~Il  422 (422)
                      |+||+++||+||+||+++||+|||+||||||||+++++|||||+|++|+
T Consensus       340 a~kv~~~LP~li~aV~~~G~~VvW~cDPMHGNT~~~~~G~KTR~fd~Il  388 (462)
T 3rzi_A          340 NHKVRDLLPPIVEKVQATGHQVIWQCDPMHGNTHESSTGFKTRHFDRIV  388 (462)
T ss_dssp             TTTHHHHHHHHHHHHHHTSCCCEEEECCSTTSEEECTTSCEEEBHHHHH
T ss_pred             CchhhhhHHHHHHHHHHCCCCeEEEeCCCCCCceeCCCCCccCcHHHHH
Confidence            9999999999999999999999999999999999999999999999985

PyMOL of 3rzi

>3tqk_A Phospho-2-dehydro-3-deoxyheptonate aldolase; transferase; 2.30A {Francisella tularensis}	Back alignment and structure

>1n8f_A DAHP synthetase; (beta/alpha)8 barrel, metal binding protein; HET: PEP; 1.75A {Escherichia coli} SCOP: c.1.10.4 PDB: 1gg1_A 1kfl_A* 1qr7_A*	Back alignment and structure

>1of8_A Phospho-2-dehydro-3-deoxyheptonate aldolase, tyrosine-inhibited; beta-alpha-barrel, lyase, synthase, synthetase; HET: PEP G3P; 1.5A {Saccharomyces cerevisiae} SCOP: c.1.10.4 PDB: 1oab_A* 1of6_A* 1hfb_A* 1ofa_A* 1ofb_A 1ofo_A 1ofp_A 1ofq_A 1ofr_A* 1og0_A*	Back alignment and structure

>3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB: 3tfc_A*	Back alignment and structure

>1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus}	Back alignment and structure

>2nwr_A 2-dehydro-3-deoxyphosphooctonate aldolase; KDO, KDO8P, KDO8PS, PEP, A5P, transferase; HET: PEP; 1.50A {Aquifex aeolicus} PDB: 2nws_A* 2nx1_A* 3e0i_A* 1fwn_A* 1fwt_A* 1fws_A* 1fx6_A 1fww_A 1fxq_A* 1fy6_A* 1jcx_A* 1jcy_A* 1pck_A* 1pcw_A* 1fxp_A* 2a21_A* 2a2i_A* 1pe1_A* 3e12_A* 2nx3_A* ...	Back alignment and structure

>3sz8_A 2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.05A {Burkholderia pseudomallei} PDB: 3tmq_A* 3und_A*	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		422
d2b7oa1		462	c.1.10.8 (A:1-462) Probable DAHP synthetase AroG,	0.0

>d2b7oa1 c.1.10.8 (A:1-462) Probable DAHP synthetase AroG, phenylalanine-repressible {Mycobacterium tuberculosis [TaxId: 1773]} Length = 462	Back information, alignment and structure


class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class-II DAHP synthetase
domain: Probable DAHP synthetase AroG, phenylalanine-repressible
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score =  514 bits (1325), Expect = 0.0
 Identities = 165/389 (42%), Positives = 230/389 (59%), Gaps = 12/389 (3%)

Query: 36  PISAVHSTDPANTKTVSTKWTPDSWRNKKALQIPEYPNKAELDSVLDTLSSFPPIVFAGE 95
           PI  + S  P  T     +   D+   K A Q P +P    L ++   L S PP+    E
Sbjct: 8   PIDQLPSLPPLPT---DLRTRLDAALAKPAAQQPTWPADQAL-AMRTVLESVPPVTVPSE 63

Query: 96  SRKLEDRLGQAALGNAFLLMGGDCAESFKEFNANNIRDTFRVLLQMSVVLMFGGQMPVIK 155
             +L+++L Q A G AFLL GGDCAE+F +    +IR   R LLQM+VVL +G  MPV+K
Sbjct: 64  IVRLQEQLAQVAKGEAFLLQGGDCAETFMDNTEPHIRGNVRALLQMAVVLTYGASMPVVK 123

Query: 156 VGRMAGQFAKPRSDPFEEKNGVKLPSYRGDNVNGDAFDPQSRIPDPHRMIRAYSQSVATL 215
           V R+AGQ+AKPRS      + + L SYRGD +NG A D  +R  DP R++RAY+ + A +
Sbjct: 124 VARIAGQYAKPRSADI---DALGLRSYRGDMINGFAPDAAAREHDPSRLVRAYANASAAM 180

Query: 216 NLLRAFATGGYAAMQRVAHWNLDFTDHSEQGDRYQELANRVDEAIGFMAAAGLTANHPIM 275
           NL+RA  + G A++  V  WN +F   S  G RY+ LA  +D  + FM+A G       +
Sbjct: 181 NLVRALTSSGLASLHLVHDWNREFVRTSPAGARYEALATEIDRGLRFMSACG--VADRNL 238

Query: 276 TSTEFWTSHECLLLPYEQALTR---EDSTSGLYYDCSAHMVWVGERTRQLDGAHVEFLRG 332
            + E + SHE L+L YE+A+ R    D      +D SAH VW+GERTRQ+DGAH+ F + 
Sbjct: 239 QTAEIYASHEALVLDYERAMLRLSDGDDGEPQLFDLSAHTVWIGERTRQIDGAHIAFAQV 298

Query: 333 VANPLGIKVSNKMDPKELVRLIVILNPKNKPGRITVIVRMGAENMRVKLPHLIRAVRNAG 392
           +ANP+G+K+   M P+  V  +  L+P NKPGR+T++ RMG   +R  LP ++  V+  G
Sbjct: 299 IANPVGVKLGPNMTPELAVEYVERLDPHNKPGRLTLVSRMGNHKVRDLLPPIVEKVQATG 358

Query: 393 QIVTWVSDPMHGNTIKAPSGLKTRSFDAI 421
             V W  DPMHGNT ++ +G KTR FD I
Sbjct: 359 HQVIWQCDPMHGNTHESSTGFKTRHFDRI 387

PyMOL of d2b7oa1

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		422
d2b7oa1		462	Probable DAHP synthetase AroG, phenylalanine-repre	100.0
d2a21a1		263	3-deoxy-D-manno-octulosonate 8-phosphate synthase	89.65

>d2b7oa1 c.1.10.8 (A:1-462) Probable DAHP synthetase AroG, phenylalanine-repressible {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class-II DAHP synthetase
domain: Probable DAHP synthetase AroG, phenylalanine-repressible
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=5.6e-173  Score=1306.15  Aligned_cols=363  Identities=44%  Similarity=0.777  Sum_probs=354.4

Q ss_pred             CCCCCccccCccccCCCCCCHHHHHHHHHHhccCCCccCHHHHHHHHHHHHHHhCCCeeEEecCCccchhhhcChhhHHh
Q 036421           54 KWTPDSWRNKKALQIPEYPNKAELDSVLDTLSSFPPIVFAGESRKLEDRLGQAALGNAFLLMGGDCAESFKEFNANNIRD  133 (422)
Q Consensus        54 ~Wsp~sWr~~pa~QqP~ypD~~~l~~v~~~L~~lPPLV~~~Ei~~Lr~~La~vA~G~aFlLQgGDCAEsF~e~~~~~I~~  133 (422)
                      .|..++|+++||+|||.|||+.+| +|+++|+++|||||++||++||++||+||+|+|||||||||||+|+||++++|++
T Consensus        23 ~~~~~~~~~~Pa~QqP~ypd~~~l-~v~~~L~~~PPLV~a~Ei~~Lk~~La~va~G~AFlLQgGDCAEsF~~~~~~~Ir~  101 (462)
T d2b7oa1          23 RTRLDAALAKPAAQQPTWPADQAL-AMRTVLESVPPVTVPSEIVRLQEQLAQVAKGEAFLLQGGDCAETFMDNTEPHIRG  101 (462)
T ss_dssp             HHHHHHHHTSCCTTCCCCCHHHHH-HHHHHHTSSCCSSCHHHHHHHHHHHHHHHTTSCEEEEEECSSCCSTTCSHHHHHH
T ss_pred             hhhhhhhhcCccccCCCCCCHHHH-HHHHHHhcCCCcCCHHHHHHHHHHHHHHhCCCEEEEECcccccChhhcChHHHHH
Confidence            378899999999999999999998 5999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhcCCCceEEeccccccCCCCCCCcccccCCeecccccCCcCCCCCCCCCCCCCChHHHHHHHHHHHH
Q 036421          134 TFRVLLQMSVVLMFGGQMPVIKVGRMAGQFAKPRSDPFEEKNGVKLPSYRGDNVNGDAFDPQSRIPDPHRMIRAYSQSVA  213 (422)
Q Consensus       134 k~~~LlqMa~vL~~g~~~PVVkVGRiAGQfAKPRS~~~E~~~G~~LPsYRGD~VNg~ef~~~aR~PDP~Rll~aY~~Saa  213 (422)
                      |+++|+|||.||+|++++|||||||||||||||||+++   ||++||||||||||+++||+++|+|||+|||+||++|++
T Consensus       102 k~k~llqMa~vL~~~~~~PVVkVGRiAGQyAKPRS~~~---dgv~LpsYRGDiVN~~~f~~~aR~PDP~Rll~aY~~Saa  178 (462)
T d2b7oa1         102 NVRALLQMAVVLTYGASMPVVKVARIAGQYAKPRSADI---DALGLRSYRGDMINGFAPDAAAREHDPSRLVRAYANASA  178 (462)
T ss_dssp             HHHHHHHHHHHHHHHHTSCEEEEEECSSCCCCCCSCSB---CTTSSBCCCCTTTSCSSSSHHHHSCCTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhccCCCEEEeccchhcccCCccCcc---cccccccccCCcccCCCCChhccCCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999986   689999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCccccccccccccccccCCchhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCccceeeccccccccccc
Q 036421          214 TLNLLRAFATGGYAAMQRVAHWNLDFTDHSEQGDRYQELANRVDEAIGFMAAAGLTANHPIMTSTEFWTSHECLLLPYEQ  293 (422)
Q Consensus       214 TLn~lRa~~~gG~adl~~~~~W~~~fv~~s~~~~~y~~~~~~i~~al~Fm~a~G~~~~~~~~~~~~~~tSHEaLlL~YE~  293 (422)
                      |||+||||++||||||+++++||++|+++++.+++|++++++|+++|+||++||++..  .+.+++||||||||||+||+
T Consensus       179 tLNllRa~~~gg~AdL~~v~~Wn~~f~~~s~~~~~y~~la~~I~~al~Fm~a~G~~~~--~l~~~~fyTSHEaLlL~YE~  256 (462)
T d2b7oa1         179 AMNLVRALTSSGLASLHLVHDWNREFVRTSPAGARYEALATEIDRGLRFMSACGVADR--NLQTAEIYASHEALVLDYER  256 (462)
T ss_dssp             HHHHHHHHHTSTTSCHHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHHTTCCGG--GTCCCCEEEEEECCCHHHHH
T ss_pred             HHHHHHHhhccCccchhhhhhcccccccCCchhHHHHHHHHHHHHHhhhHhhcCCCcc--cccccccccchHhhccchhh
Confidence            9999999999999999999999999999999999999999999999999999999865  57899999999999999999


Q ss_pred             ccccc---cCCCCCccccCCcceeecccccCCCchhHHHhhhccCCcceeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEe
Q 036421          294 ALTRE---DSTSGLYYDCSAHMVWVGERTRQLDGAHVEFLRGVANPLGIKVSNKMDPKELVRLIVILNPKNKPGRITVIV  370 (422)
Q Consensus       294 altR~---d~~~g~~Y~~SaH~lWIGeRTRqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~LnP~~~pGRlTLI~  370 (422)
                      ||||.   |+.+++|||||||||||||||||+|||||||||||+|||||||||+|+||||++||++|||+|+|||||||+
T Consensus       257 AltR~~~~d~~~~~~Y~~SaH~lWIGeRTRqlDgAHVef~rgI~NPIGiKvGP~~~pd~l~~L~~~LNP~nepGRltLI~  336 (462)
T d2b7oa1         257 AMLRLSDGDDGEPQLFDLSAHTVWIGERTRQIDGAHIAFAQVIANPVGVKLGPNMTPELAVEYVERLDPHNKPGRLTLVS  336 (462)
T ss_dssp             HTEEECCSSSSSCCEEETTCSEEEECTTTCCTTSHHHHHHHHCCSCEEEEECTTCCHHHHHHHHHHHCTTCCTTSEEEEE
T ss_pred             hheecccccCCCCceeccccceeeecccccccccchhHHHHhccCcceeeeCCCCCHHHHHHHHHHhCcccccceEEEEe
Confidence            99996   555678999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccChhHHHhhChHHHHHHHHCCCceEEEcCCCCCCcccCCCCcccccCCccC
Q 036421          371 RMGAENMRVKLPHLIRAVRNAGQIVTWVSDPMHGNTIKAPSGLKTRSFDAIR  422 (422)
Q Consensus       371 RmGa~~v~~~LP~LI~AV~~~G~~ViW~cDPMHGNT~~t~~G~KTR~f~~Il  422 (422)
                      ||||+||+++||+||+||+++||+|||+||||||||+++++|||||+|++|+
T Consensus       337 RmGa~ki~~~LP~LI~aV~~~g~~VvW~cDPMHGNT~~s~~G~KTR~f~~Il  388 (462)
T d2b7oa1         337 RMGNHKVRDLLPPIVEKVQATGHQVIWQCDPMHGNTHESSTGFKTRHFDRIV  388 (462)
T ss_dssp             CCCTTTHHHHHHHHHHHHHTTTCCCEEEECCSTTSEEECTTSCEEECHHHHH
T ss_pred             hhchHHHHHHHHHHHHHHHhcCCceEEEecCCcCCceeCCCCcccCCHHHHH
Confidence            9999999999999999999999999999999999999999999999999985

PyMOL of d2b7oa1

>d2a21a1 c.1.10.4 (A:1002-1264) 3-deoxy-D-manno-octulosonate 8-phosphate synthase (KDO8P synthase) {Aquifex aeolicus [TaxId: 63363]}	Back information, alignment and structure