Citrus Sinensis ID: 036462

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390
Protein Sequence
MATNNNKTPNDFEITVMSSPRPRPPPPLEAASSPAETESTSSTTTATATRRTSVSSQGGASSSSSPRPASTAPPRGIPETAMYSDFLSPFKRHFPWMVPGFVVANIVLFVITMYENNCPQTSATGCLGAKFLGRFSFLPLKDNPLLGPSSPALDKMGALTVAKVVTQHQVWRLLTCIWLHGGVFHVLANMLSLLFIGIRLEQEFGFVRIGFLYVLSGFGGSLTSALFIQEGISVGASGALFGLLGAMLSELFTNWTIYANKLAALLTLIVIISINLAVGILPKVDNFAHIGGFLSGFLLGFVLLIRPQFGWISQKKAPPGYMINCVKSKHKPYQYVFWVISLILLIAGYTVGLILLLRGGNLNNHCSWCRYLSCVPTPWWNCKAQQLYCQ
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHcccccEEccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccEEEEEccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccEEEEccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHEHHHHHHccccccccccccEEEHHHHcccccccccccccccccHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHEEEEEHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEcccccccccccccccc
Coil and Loop (DISEMBL)
matnnnktpndfeitvmssprprppppleaasspaetestsstttatatrrtsvssqggasssssprpastapprgipetamysdflspfkrhfpwmvpgFVVANIVLFVITMYenncpqtsatgclgakflgrfsflplkdnpllgpsspaldkMGALTVAKVVTQHQVWRLLTCIWLHGGVFHVLANMLSLLFIGIRLEQEFGFVRIGFLYVLsgfggsltSALFIQEGISVGASGALFGLLGAMLSELFTNWTIYANKLAALLTLIVIISINLavgilpkvdnfahiggFLSGFLLGFVLLirpqfgwisqkkappgymincvkskhkpyqYVFWVISLILLIAGYTVGLILLLrggnlnnhcswcrylscvptpwwnckaqqlycq
Flexible Loop (DISEMBL)
matnnnktpndfeiTVMSSPRPRPPPPLEaasspaetestsstttatatrrtsvssqggasssssprpastapprgIPETAMYSDFLSPFKRHFPWMVPGFVVANIVLFVITMYENNCPQTSATGCLGAKFLGRFSFLPLKDNPLLGPSSPALDKMGALTVAKVVTQHQVWRLLTCIWLHGGVFHVLANMLSLLFIGIRLEQEFGFVRIGFLYVLSGFGGSLTSALFIQEGISVGASGALFGLLGAMLSELFTNWTIYANKLAALLTLIVIISINLAVGILPKVDNFAHIGGFLSGFLLGFVLLIRPQFGWISQKKAPPGYMINCVKSKHKPYQYVFWVISLILLIAGYTVGLILLLRGGNLNNHCSWCRYLSCVPTPWWNCKAQQLYCQ
Low Complexity Region (SEG)
MATNNNKTPNDFEITVMssprprppppleaasspaetestsstttatatrrtsvssqggasssssprpastapprgIPETAMYSDFLSPFKRHFPWMVPGFVVANIVLFVITMYENNCPQTSATGCLGAKFLGRFSFLPLKDNPLLGPSSPALDKMGALTVAKVVTQHQVWRLLTCIWLHGGVFHVLANMLSLLFIGIRLEQEFGFVRIGFLYVLSGFGGSLTSALFIQEGIsvgasgalfgllgamlsELFTNWTIYANKLAALLTLIVIISINLAVGILPKVDNFAHIggflsgfllgfvllIRPQFGWISQKKAPPGYMINCVKSKHKPYQYVFWVISLILLIAGYTVglilllrggnlnnHCSWCRYLSCVPTPWWNCKAQQLYCQ
Disordered region (IsUnstruct)
********************************************************************************AMYSDFLSPFKRHFPWMVPGFVVANIVLFVITMYENNCPQTSATGCLGAKFLGRFSFLPLKDNPLLGP**PALDKMGALTVAKVVTQHQVWRLLTCIWLHGGVFHVLANMLSLLFIGIRLEQEFGFVRIGFLYVLSGFGGSLTSALFIQEGISVGASGALFGLLGAMLSELFTNWTIYANKLAALLTLIVIISINLAVGILPKVDNFAHIGGFLSGFLLGFVLLIRPQFGWISQKKAPPGYMINCVKSKHKPYQYVFWVISLILLIAGYTVGLILLLRGGNLNNHCSWCRYLSCVPTPWWNCKAQQLYC*
Disordered Region (DISOPRED)
****************************************************************************************PFKRHFPWMVPGFVVANIVLFVITMYENNCPQTSATGCLGAKFLGRFSFLPLKDNPLLGPSSPALDKMGALTVAKVVTQHQVWRLLTCIWLHGGVFHVLANMLSLLFIGIRLEQEFGFVRIGFLYVLSGFGGSLTSALFIQEGISVGASGALFGLLGAMLSELFTNWTIYANKLAALLTLIVIISINLAVGILPKVDNFAHIGGFLSGFLLGFVLLIRPQFGWISQKKAPPGYMINCVKSKHKPYQYVFWVISLILLIAGYTVGLILLLRGGNLNNHCSWCRYLSCVPTPWWNCKAQQL***
Disordered Region (DISEMBL)
********PNDFEITVMS*******************************************************PRGIPETAMYSDFLSPFKRHFPWMVPGFVVANIVLFVITMYENNCPQTSATGCLGAKFLGRFSFLPLKDNPLLGPSSPALDKMGALTVAKVVTQHQVWRLLTCIWLHGGVFHVLANMLSLLFIGIRLEQEFGFVRIGFLYVLSGFGGSLTSALFIQEGISVGASGALFGLLGAMLSELFTNWTIYANKLAALLTLIVIISINLAVGILPKVDNFAHIGGFLSGFLLGFVLLIRPQFGWISQKKAPPGYMINCVKSKHKPYQYVFWVISLILLIAGYTVGLILLLRGGNLNNHCSWCRYLSCVPTPWWNCKAQQLYCQ
Disordered Region (DISPRO)
***********FE**V*SS************************************************************TAMYSDFLSPFKRHFPWMVPGFVVANIVLFVITMYENNCPQTSATGCLGAKFLGRFSFLPLKDNPLLGPSSPALDKMGALTVAKVVTQHQVWRLLTCIWLHGGVFHVLANMLSLLFIGIRLEQEFGFVRIGFLYVLSGFGGSLTSALFIQEGISVGASGALFGLLGAMLSELFTNWTIYANKLAALLTLIVIISINLAVGILPKVDNFAHIGGFLSGFLLGFVLLIRPQFGWISQKKAPPGYMINCVKSKHKPYQYVFWVISLILLIAGYTVGLILLLRGGNLNNHCSWCRYLSCVPTPWWNCKAQQL*C*
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MATNNNKTPNDFEITVMSSPRPRPPPPLEAASSPAETESTSSTTTATATRRTSVSSQGGASSSSSPRPASTAPPRGIPETAMYSDFLSPFKRHFPWMVPGFVVANIVLFVITMYENNCPQTSATGCLGAKFLGRFSFLPLKDNPLLGPSSPALDKMGALTVAKVVTQHQVWRLLTCIWLHGGVFHVLANMLSLLFIGIRLEQEFGFVRIGFLYVLSGFGGSLTSALFIQEGISVGASGALFGLLGAMLSELFTNWTIYANKLAALLTLIVIISINLAVGILPKVDNFAHIGGFLSGFLLGFVLLIRPQFGWISQKKAPPGYMINCVKSKHKPYQYVFWVISLILLIAGYTVGLILLLRGGNLNNHCSWCRYLSCVPTPWWNCKAQQLYCQ
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	390	2.2.26 [Sep-21-2011]
Q6GMF8	857	Inactive rhomboid protein	yes	no	0.482	0.219	0.326	2e-26
Q6PIX5	856	Inactive rhomboid protein	yes	no	0.517	0.235	0.315	1e-24
Q96CC6	855	Inactive rhomboid protein	yes	no	0.517	0.236	0.310	1e-24
Q499S9	856	Inactive rhomboid protein	yes	no	0.517	0.235	0.315	1e-24
B0VX73	855	Inactive rhomboid protein	yes	no	0.517	0.236	0.306	2e-24
A9L8T6	855	Inactive rhomboid protein	N/A	no	0.517	0.236	0.310	3e-24
A7YWH9	856	Inactive rhomboid protein	yes	no	0.517	0.235	0.310	4e-24
B1MT31	855	Inactive rhomboid protein	N/A	no	0.517	0.236	0.306	4e-24
Q00M95	827	Inactive rhomboid protein	no	no	0.551	0.259	0.330	2e-22
A0JPA1	826	Inactive rhomboid protein	no	no	0.482	0.227	0.346	2e-22

>sp|Q6GMF8|RHDF1_DANRE Inactive rhomboid protein 1 OS=Danio rerio GN=rhbdf1 PE=2 SV=1

 Score =  120 bits (301), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 68/208 (32%), Positives = 105/208 (50%), Gaps = 20/208 (9%)

Query: 169 QVWRLLTCIWLHGGVFHVLANMLSLLFIGIRLEQEFGFVRIGFLYVLSGFGGSLTSALFI 228
           Q +RL   ++LH G+ H L ++   + I   LE+  G++RI  +Y+LSG  G+L SA+F+
Sbjct: 654 QFYRLWLSLFLHAGILHCLVSVCFQMTILRDLEKLAGWLRISIIYILSGITGNLASAIFL 713

Query: 229 QEGISVGASGALFGLLGAMLSELFTNWTIYANKLAALLTLIVIISINLAVGILPKVDNFA 288
                VG +G+ FG+L  +  EL  +W I A    A   L+ ++    A G+LP +DNFA
Sbjct: 714 PYRAEVGPAGSQFGILACLFVELIQSWQILAQPWRAFTKLLCVVLFLFAFGLLPWIDNFA 773

Query: 289 HIGGFLSGFLLGFVLLIRPQFGWISQKKAPPGYMINCVKSKHKPYQYVFWVISLILLIAG 348
           HI GF+SGF L F  L    FG +                    Y+    +I  +++  G
Sbjct: 774 HISGFISGFFLSFAFLPYISFGRLDM------------------YRKRCQIIIFLVVFLG 815

Query: 349 YTVGLILLLRGGNLNNHCSWCRYLSCVP 376
              GL++L     +   C WC  L+C+P
Sbjct: 816 LFAGLVVLFYVHPIK--CEWCELLTCIP 841

Rhomboid protease-like protein which has no protease activity but regulates the secretion of several ligands of the epidermal growth factor receptor. Indirectly activates the epidermal growth factor receptor signaling pathway and may thereby regulate sleep, cell survival, proliferation and migration.
Danio rerio (taxid: 7955)

>sp|Q6PIX5|RHDF1_MOUSE Inactive rhomboid protein 1 OS=Mus musculus GN=Rhbdf1 PE=1 SV=2

 Score =  114 bits (286), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 108/222 (48%), Gaps = 20/222 (9%)

Query: 169 QVWRLLTCIWLHGGVFHVLANMLSLLFIGIRLEQEFGFVRIGFLYVLSGFGGSLTSALFI 228
           Q +RL   ++LH G+ H L ++   + +   LE+  G+ RI  +Y+LSG  G+L SA+F+
Sbjct: 653 QFYRLWLSLFLHAGILHCLVSVCFQMTVLRDLEKLAGWHRIAIIYLLSGITGNLASAIFL 712

Query: 229 QEGISVGASGALFGLLGAMLSELFTNWTIYANKLAALLTLIVIISINLAVGILPKVDNFA 288
                VG +G+ FG+L  +  ELF +W I A    A   L+ ++    A G+LP +DNFA
Sbjct: 713 PYRAEVGPAGSQFGILACLFVELFQSWQILARPWRAFFKLLAVVLFLFAFGLLPWIDNFA 772

Query: 289 HIGGFLSGFLLGFVLLIRPQFGWISQKKAPPGYMINCVKSKHKPYQYVFWVISLILLIAG 348
           HI GF+SG  L F  L    FG     +     +I         +Q VF  +   L++  
Sbjct: 773 HISGFVSGLFLSFAFLPYISFGKFDLYRKRCQIII---------FQVVFLGLLAGLVVLF 823

Query: 349 YTVGLILLLRGGNLNNHCSWCRYLSCVPTPWWNCKAQQLYCQ 390
           Y   +            C WC +L+C+P     C+  +L  Q
Sbjct: 824 YFYPV-----------RCEWCEFLTCIPFTDKFCEKYELDAQ 854

Rhomboid protease-like protein which has no protease activity but regulates the secretion of several ligands of the epidermal growth factor receptor. Indirectly activates the epidermal growth factor receptor signaling pathway and may thereby regulate sleep, cell survival, proliferation and migration.

Mus musculus (taxid: 10090)

>sp|Q96CC6|RHDF1_HUMAN Inactive rhomboid protein 1 OS=Homo sapiens GN=RHBDF1 PE=1 SV=2

 Score =  114 bits (285), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 69/222 (31%), Positives = 107/222 (48%), Gaps = 20/222 (9%)

Query: 169 QVWRLLTCIWLHGGVFHVLANMLSLLFIGIRLEQEFGFVRIGFLYVLSGFGGSLTSALFI 228
           Q +RL   ++LH G+ H L ++   + +   LE+  G+ RI  +Y+LSG  G+L SA+F+
Sbjct: 652 QFYRLWLSLFLHAGILHCLVSICFQMTVLRDLEKLAGWHRIAIIYLLSGVTGNLASAIFL 711

Query: 229 QEGISVGASGALFGLLGAMLSELFTNWTIYANKLAALLTLIVIISINLAVGILPKVDNFA 288
                VG +G+ FG+L  +  ELF +W I A    A   L+ ++      G+LP +DNFA
Sbjct: 712 PYRAEVGPAGSQFGILACLFVELFQSWQILARPWRAFFKLLAVVLFLFTFGLLPWIDNFA 771

Query: 289 HIGGFLSGFLLGFVLLIRPQFGWISQKKAPPGYMINCVKSKHKPYQYVFWVISLILLIAG 348
           HI GF+SG  L F  L    FG     +     +I         +Q VF  +   L++  
Sbjct: 772 HISGFISGLFLSFAFLPYISFGKFDLYRKRCQIII---------FQVVFLGLLAGLVVLF 822

Query: 349 YTVGLILLLRGGNLNNHCSWCRYLSCVPTPWWNCKAQQLYCQ 390
           Y   +            C WC +L+C+P     C+  +L  Q
Sbjct: 823 YVYPV-----------RCEWCEFLTCIPFTDKFCEKYELDAQ 853

Rhomboid protease-like protein which has no protease activity but regulates the secretion of several ligands of the epidermal growth factor receptor. Indirectly activates the epidermal growth factor receptor signaling pathway and may thereby regulate sleep, cell survival, proliferation and migration.

Homo sapiens (taxid: 9606)

>sp|Q499S9|RHDF1_RAT Inactive rhomboid protein 1 OS=Rattus norvegicus GN=Rhbdf1 PE=2 SV=1

 Score =  114 bits (284), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 108/222 (48%), Gaps = 20/222 (9%)

Query: 169 QVWRLLTCIWLHGGVFHVLANMLSLLFIGIRLEQEFGFVRIGFLYVLSGFGGSLTSALFI 228
           Q +RL   ++LH G+ H L ++   + +   LE+  G+ RI  +Y+LSG  G+L SA+F+
Sbjct: 653 QFYRLWLSLFLHAGILHCLVSVCFQMTVLRDLEKLAGWHRIAIIYLLSGVTGNLASAIFL 712

Query: 229 QEGISVGASGALFGLLGAMLSELFTNWTIYANKLAALLTLIVIISINLAVGILPKVDNFA 288
                VG +G+ FG+L  +  ELF +W I A    A   L+ ++    A G+LP +DNFA
Sbjct: 713 PYRAEVGPAGSQFGILACLFVELFQSWQILARPWRAFFKLLAVVLFLFAFGLLPWIDNFA 772

Query: 289 HIGGFLSGFLLGFVLLIRPQFGWISQKKAPPGYMINCVKSKHKPYQYVFWVISLILLIAG 348
           HI GF+SG  L F  L    FG     +     +I         +Q VF  +   L++  
Sbjct: 773 HISGFVSGLFLSFAFLPYISFGKFDLYRKRCQIII---------FQAVFLGLLAGLVVLF 823

Query: 349 YTVGLILLLRGGNLNNHCSWCRYLSCVPTPWWNCKAQQLYCQ 390
           Y   +            C WC +L+C+P     C+  +L  Q
Sbjct: 824 YFYPV-----------RCEWCEFLTCIPFTDKFCEKYELDAQ 854

Rhomboid protease-like protein which has no protease activity but regulates the secretion of several ligands of the epidermal growth factor receptor. Indirectly activates the epidermal growth factor receptor signaling pathway and may thereby regulate sleep, cell survival, proliferation and migration.

Rattus norvegicus (taxid: 10116)

>sp|B0VX73|RHDF1_CALJA Inactive rhomboid protein 1 OS=Callithrix jacchus GN=RHBDF1 PE=3 SV=1

 Score =  113 bits (283), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 68/222 (30%), Positives = 107/222 (48%), Gaps = 20/222 (9%)

Query: 169 QVWRLLTCIWLHGGVFHVLANMLSLLFIGIRLEQEFGFVRIGFLYVLSGFGGSLTSALFI 228
           Q +RL   ++LH G+ H L ++   + +   LE+  G+ RI  +Y+LSG  G+L SA+F+
Sbjct: 652 QFYRLWLSLFLHAGILHCLVSICFQMTVLRDLEKLAGWHRIAIIYLLSGVTGNLASAIFL 711

Query: 229 QEGISVGASGALFGLLGAMLSELFTNWTIYANKLAALLTLIVIISINLAVGILPKVDNFA 288
                VG +G+ FG+L  +  ELF +W I A    A   L+ ++      G+LP +DNFA
Sbjct: 712 PYRAEVGPAGSQFGILACLFVELFQSWQILARPWRAFFKLLAVVLFLFTFGLLPWIDNFA 771

Query: 289 HIGGFLSGFLLGFVLLIRPQFGWISQKKAPPGYMINCVKSKHKPYQYVFWVISLILLIAG 348
           HI GF+SG  L F  L    FG     +     ++         +Q VF  +   L++  
Sbjct: 772 HISGFISGLFLSFAFLPYISFGKFDLYRKRCQIIV---------FQVVFLGLLAGLVVLF 822

Query: 349 YTVGLILLLRGGNLNNHCSWCRYLSCVPTPWWNCKAQQLYCQ 390
           Y   +            C WC +L+C+P     C+  +L  Q
Sbjct: 823 YVYPV-----------RCEWCEFLTCIPFTDKFCEKYELDAQ 853

Rhomboid protease-like protein which has no protease activity but regulates the secretion of several ligands of the epidermal growth factor receptor. Indirectly activates the epidermal growth factor receptor signaling pathway and may thereby regulate sleep, cell survival, proliferation and migration.

Callithrix jacchus (taxid: 9483)

>sp|A9L8T6|RHDF1_PAPAN Inactive rhomboid protein 1 OS=Papio anubis GN=RHBDF1 PE=3 SV=1

 Score =  113 bits (282), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 69/222 (31%), Positives = 107/222 (48%), Gaps = 20/222 (9%)

Query: 169 QVWRLLTCIWLHGGVFHVLANMLSLLFIGIRLEQEFGFVRIGFLYVLSGFGGSLTSALFI 228
           Q +RL   ++LH G+ H L ++   + +   LE+  G+ RI  +Y+LSG  G+L SA+F+
Sbjct: 652 QFYRLWLSLFLHAGILHCLVSICFQMTVLRDLEKLAGWHRIAIIYLLSGVTGNLASAIFL 711

Query: 229 QEGISVGASGALFGLLGAMLSELFTNWTIYANKLAALLTLIVIISINLAVGILPKVDNFA 288
                VG +G+ FG+L  +  ELF +W I A    A   L+ ++      G+LP +DNFA
Sbjct: 712 PYRAEVGPAGSQFGILACLFVELFQSWQILARPWRAFFKLLAVVLFLFTFGLLPWIDNFA 771

Query: 289 HIGGFLSGFLLGFVLLIRPQFGWISQKKAPPGYMINCVKSKHKPYQYVFWVISLILLIAG 348
           HI GF+SG  L F  L    FG     +     +I         +Q VF  +   L++  
Sbjct: 772 HISGFISGLFLSFAFLPYISFGKFDLYRKRCQIII---------FQVVFLGLLAGLVVLF 822

Query: 349 YTVGLILLLRGGNLNNHCSWCRYLSCVPTPWWNCKAQQLYCQ 390
           Y   +            C WC +L+C+P     C+  +L  Q
Sbjct: 823 YFYPV-----------RCEWCEFLTCIPFTDKFCEKYELDAQ 853

Rhomboid protease-like protein which has no protease activity but regulates the secretion of several ligands of the epidermal growth factor receptor. Indirectly activates the epidermal growth factor receptor signaling pathway and may thereby regulate sleep, cell survival, proliferation and migration.

Papio anubis (taxid: 9555)

>sp|A7YWH9|RHDF1_BOVIN Inactive rhomboid protein 1 OS=Bos taurus GN=RHBDF1 PE=2 SV=1

 Score =  112 bits (281), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 69/222 (31%), Positives = 107/222 (48%), Gaps = 20/222 (9%)

Query: 169 QVWRLLTCIWLHGGVFHVLANMLSLLFIGIRLEQEFGFVRIGFLYVLSGFGGSLTSALFI 228
           Q +RL   ++LH GV H L ++   + +   LE+  G+ RI  +Y+LSG  G+L SA+F+
Sbjct: 653 QFYRLWLSLFLHAGVLHCLVSVCFQMTVLRDLEKLAGWHRIAIIYLLSGVTGNLASAIFL 712

Query: 229 QEGISVGASGALFGLLGAMLSELFTNWTIYANKLAALLTLIVIISINLAVGILPKVDNFA 288
                VG +G+ FG+L  +  ELF +W I A    A   L+ ++      G+LP +DNFA
Sbjct: 713 PYRAEVGPAGSQFGILACLFVELFQSWQILARPWRAFFKLLAVVLFLFTFGLLPWIDNFA 772

Query: 289 HIGGFLSGFLLGFVLLIRPQFGWISQKKAPPGYMINCVKSKHKPYQYVFWVISLILLIAG 348
           HI GF+SG  L F  L    FG     +     ++         +Q VF  +   L++  
Sbjct: 773 HISGFISGLFLSFAFLPYISFGKFDLYRKRCQIIV---------FQLVFLGLLAGLVVLF 823

Query: 349 YTVGLILLLRGGNLNNHCSWCRYLSCVPTPWWNCKAQQLYCQ 390
           Y   +            C WC +L+C+P     C+  +L  Q
Sbjct: 824 YFYPV-----------RCEWCEFLTCIPFTDKFCEKYELDAQ 854

Rhomboid protease-like protein which has no protease activity but regulates the secretion of several ligands of the epidermal growth factor receptor. Indirectly activates the epidermal growth factor receptor signaling pathway and may thereby regulate sleep, cell survival, proliferation and migration.

Bos taurus (taxid: 9913)

>sp|B1MT31|RHDF1_CALMO Inactive rhomboid protein 1 OS=Callicebus moloch GN=RHBDF1 PE=3 SV=1

 Score =  112 bits (281), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 68/222 (30%), Positives = 107/222 (48%), Gaps = 20/222 (9%)

Query: 169 QVWRLLTCIWLHGGVFHVLANMLSLLFIGIRLEQEFGFVRIGFLYVLSGFGGSLTSALFI 228
           Q +RL   ++LH G+ H L ++   + +   LE+  G+ RI  +Y+LSG  G+L SA+F+
Sbjct: 652 QFYRLWLSLFLHAGILHCLVSICFQMTVLRDLEKLAGWHRIAIIYLLSGVTGNLASAIFL 711

Query: 229 QEGISVGASGALFGLLGAMLSELFTNWTIYANKLAALLTLIVIISINLAVGILPKVDNFA 288
                VG +G+ FG+L  +  ELF +W I A    A   L+ ++      G+LP +DNFA
Sbjct: 712 PYRAEVGPAGSQFGILACLFVELFQSWQILARPWRAFFKLLAVVLFLFTFGLLPWIDNFA 771

Query: 289 HIGGFLSGFLLGFVLLIRPQFGWISQKKAPPGYMINCVKSKHKPYQYVFWVISLILLIAG 348
           HI GF+SG  L F  L    FG     +     ++         +Q VF  +   L++  
Sbjct: 772 HISGFISGLFLSFAFLPYISFGKFDLYRKRCQIIV---------FQVVFLGLLAGLVVLF 822

Query: 349 YTVGLILLLRGGNLNNHCSWCRYLSCVPTPWWNCKAQQLYCQ 390
           Y   +            C WC +L+C+P     C+  +L  Q
Sbjct: 823 YFYPV-----------RCEWCEFLTCIPFTDKFCEKYELDAQ 853

Rhomboid protease-like protein which has no protease activity but regulates the secretion of several ligands of the epidermal growth factor receptor. Indirectly activates the epidermal growth factor receptor signaling pathway and may thereby regulate sleep, cell survival, proliferation and migration.

Callicebus moloch (taxid: 9523)

>sp|Q00M95|RHDF2_CANFA Inactive rhomboid protein 2 OS=Canis familiaris GN=RHBDF2 PE=2 SV=1

 Score =  107 bits (267), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 78/236 (33%), Positives = 113/236 (47%), Gaps = 21/236 (8%)

Query: 153 LDKM-GALTVAKVVTQHQVWRLLTCIWLHGGVFHVLANMLSLLFIGIRLEQEFGFVRIGF 211
           LDK+ G L         Q +RL   ++LH GV H L +++  + I   LE+  G+ RI  
Sbjct: 607 LDKVCGLLPFLNPEVPDQFYRLWLSLFLHAGVVHCLVSVVFQMTILRDLEKLAGWHRIAI 666

Query: 212 LYVLSGFGGSLTSALFIQEGISVGASGALFGLLGAMLSELFTNWTIYANKLAALLTLIVI 271
           +++LSG  G+L SA+F+     VG +G+ FGLL  +  ELF +W +      A L L  I
Sbjct: 667 IFILSGITGNLASAIFLPYRAEVGPAGSQFGLLACLFVELFQSWQLLERPWKAFLNLSAI 726

Query: 272 ISINLAVGILPKVDNFAHIGGFLSGFLLGFVLLIRPQFGWISQKKAPPGYMINCVKSKHK 331
           +      G+LP +DN AHI GFLSG LL F  L    FG  S K                
Sbjct: 727 VLFLFICGLLPWIDNIAHIFGFLSGLLLAFAFLPYITFG-TSDK---------------- 769

Query: 332 PYQYVFWVISLILLIAGYTVGLILLLRGGNLNNHCSWCRYLSCVPTPWWNCKAQQL 387
            Y+    ++  +L+ AG    L++ L    +N    W  YL+C P     C+  +L
Sbjct: 770 -YRKRALILVSLLVFAGLFASLVIWLYVYPIN--WPWIEYLTCFPFTSRFCEKYEL 822

Rhomboid protease-like protein which has no protease activity but regulates the secretion of several ligands of the epidermal growth factor receptor. Indirectly activates the epidermal growth factor receptor signaling pathway and may thereby regulate sleep, cell survival, proliferation and migration.

Canis familiaris (taxid: 9615)

>sp|A0JPA1|RHDF2_XENTR Inactive rhomboid protein 2 OS=Xenopus tropicalis GN=rhbdf2 PE=2 SV=1

 Score =  106 bits (265), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 72/208 (34%), Positives = 107/208 (51%), Gaps = 20/208 (9%)

Query: 169 QVWRLLTCIWLHGGVFHVLANMLSLLFIGIRLEQEFGFVRIGFLYVLSGFGGSLTSALFI 228
           Q +RL   ++LH GV H   +++  + +   LE+  G++RI  +Y+LSG  G+L SALF+
Sbjct: 623 QFYRLWLSLFLHAGVIHCCVSVVFQMTVLRDLEKLAGWLRISIIYILSGITGNLASALFL 682

Query: 229 QEGISVGASGALFGLLGAMLSELFTNWTIYANKLAALLTLIVIISINLAVGILPKVDNFA 288
                VG +G+ FGLL  +  ELF +W I A    A L L+ I+      G+LP +DN A
Sbjct: 683 PYRAEVGPAGSQFGLLACLFVELFQSWQILAKPWKAFLKLLGIVLFLFLFGLLPWIDNIA 742

Query: 289 HIGGFLSGFLLGFVLLIRPQFGWISQKKAPPGYMINCVKSKHKPYQYVFWVISLILLIAG 348
           HI GFLSG LL F  L    FG                 +  K  +    +ISL++ + G
Sbjct: 743 HIFGFLSGLLLSFSFLPYITFG-----------------TADKFRKRAMIIISLLVFV-G 784

Query: 349 YTVGLILLLRGGNLNNHCSWCRYLSCVP 376
               L++ L    +N   +W  YL+C+P
Sbjct: 785 LFASLVIWLYVYPIN--WAWIEYLTCLP 810

Rhomboid protease-like protein which has no protease activity but regulates the secretion of several ligands of the epidermal growth factor receptor. Indirectly activates the epidermal growth factor receptor signaling pathway and may thereby regulate sleep, cell survival, proliferation and migration.

Xenopus tropicalis (taxid: 8364)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	390
225434919	391	PREDICTED: inactive rhomboid protein 1 [	0.815	0.813	0.727	1e-129
147818034	391	hypothetical protein VITISV_021082 [Viti	0.815	0.813	0.727	1e-129
42569431	389	protein RHOMBOID-like 1 [Arabidopsis tha	0.782	0.784	0.724	1e-127
297822631	387	hypothetical protein ARALYDRAFT_481823 [	0.782	0.788	0.717	1e-126
356547255	392	PREDICTED: inactive rhomboid protein 1-l	0.794	0.790	0.727	1e-123
356557429	389	PREDICTED: inactive rhomboid protein 1-l	0.782	0.784	0.737	1e-122
255584755	408	KOM, putative [Ricinus communis] gi|2235	0.861	0.823	0.632	1e-122
449455106	383	PREDICTED: inactive rhomboid protein 1-l	0.876	0.892	0.648	1e-122
224104429	292	predicted protein [Populus trichocarpa]	0.748	1.0	0.721	1e-118
224054696	328	predicted protein [Populus trichocarpa]	0.751	0.893	0.715	1e-118

>gi|225434919|ref|XP_002283488.1| PREDICTED: inactive rhomboid protein 1 [Vitis vinifera]

 Score =  467 bits (1201), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 235/323 (72%), Positives = 275/323 (85%), Gaps = 5/323 (1%)

Query: 68  PASTAPPRGIPETAMYSDFLSPFKRHFPWMVPGFVVANIVLFVITMYENNCPQTSATGCL 127
           PA++APPR   +  ++S+F  PFKR FPWMVP FVVANI +F+ITM+ NNCP+ S + C+
Sbjct: 34  PAASAPPR--QQQHLFSEF-RPFKRWFPWMVPTFVVANIAMFLITMFINNCPKNSVS-CV 89

Query: 128 GAKFLGRFSFLPLKDNPLLGPSSPALDKMGALTVAKVVTQHQVWRLLTCIWLHGGVFHVL 187
            A FLGRFSF PLK+NPLLGPSS  L+KMGAL V+KVV +HQVWRL++CIWLH GVFHVL
Sbjct: 90  -ADFLGRFSFQPLKENPLLGPSSSTLEKMGALEVSKVVHRHQVWRLISCIWLHAGVFHVL 148

Query: 188 ANMLSLLFIGIRLEQEFGFVRIGFLYVLSGFGGSLTSALFIQEGISVGASGALFGLLGAM 247
           ANMLSL+FIGIRLEQEFGFVRIG LYV+SGFGGS+ S+LFIQ  ISVGASGALFGLLG M
Sbjct: 149 ANMLSLVFIGIRLEQEFGFVRIGLLYVVSGFGGSMLSSLFIQSSISVGASGALFGLLGGM 208

Query: 248 LSELFTNWTIYANKLAALLTLIVIISINLAVGILPKVDNFAHIGGFLSGFLLGFVLLIRP 307
           LSEL TNWTIYANK AALLTLI+II +NLAVGILP VDNFAHIGGF+SGFLLGFV LIRP
Sbjct: 209 LSELITNWTIYANKFAALLTLILIIIVNLAVGILPHVDNFAHIGGFVSGFLLGFVFLIRP 268

Query: 308 QFGWISQKKAPPGYMINCVKSKHKPYQYVFWVISLILLIAGYTVGLILLLRGGNLNNHCS 367
           QFGW+SQ+ A PG++   VK KHK YQYV WV+SLILL  G+TVG+++LLRG + N+ CS
Sbjct: 269 QFGWVSQRNASPGHIAPSVKPKHKMYQYVLWVMSLILLTVGFTVGMVMLLRGVSGNDQCS 328

Query: 368 WCRYLSCVPTPWWNCKAQQLYCQ 390
           WC YLSCVPT  W+CK+QQ+YC+
Sbjct: 329 WCHYLSCVPTSKWSCKSQQVYCE 351

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147818034|emb|CAN64890.1| hypothetical protein VITISV_021082 [Vitis vinifera]

 Score =  466 bits (1199), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 235/323 (72%), Positives = 274/323 (84%), Gaps = 5/323 (1%)

Query: 68  PASTAPPRGIPETAMYSDFLSPFKRHFPWMVPGFVVANIVLFVITMYENNCPQTSATGCL 127
           PA++APPR   +  ++S+F  PFKR FPWMVP FVVANI +F+ITM+ NNCP+ S + C+
Sbjct: 34  PAASAPPR--QQQHLFSEF-RPFKRWFPWMVPTFVVANIAMFLITMFINNCPKNSVS-CV 89

Query: 128 GAKFLGRFSFLPLKDNPLLGPSSPALDKMGALTVAKVVTQHQVWRLLTCIWLHGGVFHVL 187
            A FLGRFSF PLK+NPLLGPSS  L+KMGAL V+KVV +HQVWRL++CIWLH GVFHVL
Sbjct: 90  -ADFLGRFSFQPLKENPLLGPSSSTLEKMGALEVSKVVHRHQVWRLISCIWLHAGVFHVL 148

Query: 188 ANMLSLLFIGIRLEQEFGFVRIGFLYVLSGFGGSLTSALFIQEGISVGASGALFGLLGAM 247
           ANMLSL+FIGIRLEQEFGFVRIG LYV+SGFGGS+ S+LFIQ  ISVGASGALFGLLG M
Sbjct: 149 ANMLSLVFIGIRLEQEFGFVRIGLLYVVSGFGGSMLSSLFIQSSISVGASGALFGLLGGM 208

Query: 248 LSELFTNWTIYANKLAALLTLIVIISINLAVGILPKVDNFAHIGGFLSGFLLGFVLLIRP 307
           LSEL TNWTIYANK AALLTLI+II +NLAVGILP VDNFAHIGGF+SGFLLGFV LIRP
Sbjct: 209 LSELITNWTIYANKFAALLTLILIIIVNLAVGILPHVDNFAHIGGFVSGFLLGFVFLIRP 268

Query: 308 QFGWISQKKAPPGYMINCVKSKHKPYQYVFWVISLILLIAGYTVGLILLLRGGNLNNHCS 367
           QFGW+SQ+ A PG++   VK KHK YQYV WV+SLILL  G+TVG+++LLRG   N+ CS
Sbjct: 269 QFGWVSQRNASPGHIAXSVKPKHKMYQYVLWVMSLILLTVGFTVGMVMLLRGVXGNDXCS 328

Query: 368 WCRYLSCVPTPWWNCKAQQLYCQ 390
           WC YLSCVPT  W+CK+QQ+YC+
Sbjct: 329 WCHYLSCVPTSKWSCKSQQVYCE 351

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42569431|ref|NP_180469.3| protein RHOMBOID-like 1 [Arabidopsis thaliana] gi|110737035|dbj|BAF00472.1| hypothetical protein [Arabidopsis thaliana] gi|330253108|gb|AEC08202.1| protein RHOMBOID-like 1 [Arabidopsis thaliana]

 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 223/308 (72%), Positives = 259/308 (84%), Gaps = 3/308 (0%)

Query: 83  YSDFLSPFKRHFPWMVPGFVVANIVLFVITMYENNCPQTSATGCLGAKFLGRFSFLPLKD 142
           +++F  PFK  FPW+VP  VVANI LF I+M+ NNCP+ SA  CL A+FLGRF+F P+K+
Sbjct: 45  FAEF-RPFKLWFPWLVPAIVVANIALFAISMFINNCPKNSAY-CL-ARFLGRFAFQPMKE 101

Query: 143 NPLLGPSSPALDKMGALTVAKVVTQHQVWRLLTCIWLHGGVFHVLANMLSLLFIGIRLEQ 202
           NPLLGPSS  L+KMGAL V+ VV +H+VWRL TCIWLH GVFHVLANMLSL+FIGIRLEQ
Sbjct: 102 NPLLGPSSLTLEKMGALDVSMVVHKHEVWRLFTCIWLHAGVFHVLANMLSLIFIGIRLEQ 161

Query: 203 EFGFVRIGFLYVLSGFGGSLTSALFIQEGISVGASGALFGLLGAMLSELFTNWTIYANKL 262
           EFGFVRIG LY++SGFGGSL S+LF + GISVGASGALFGLLGAMLSEL TNWTIYANK 
Sbjct: 162 EFGFVRIGLLYMISGFGGSLLSSLFNRAGISVGASGALFGLLGAMLSELLTNWTIYANKF 221

Query: 263 AALLTLIVIISINLAVGILPKVDNFAHIGGFLSGFLLGFVLLIRPQFGWISQKKAPPGYM 322
           AALLTLI II+INLAVGILP VDNFAH+GGF SGFLLGFV LIRPQ+G+ +Q+  P GY 
Sbjct: 222 AALLTLIFIIAINLAVGILPHVDNFAHLGGFTSGFLLGFVFLIRPQYGYFNQRNNPRGYA 281

Query: 323 INCVKSKHKPYQYVFWVISLILLIAGYTVGLILLLRGGNLNNHCSWCRYLSCVPTPWWNC 382
               KSKHKPYQYV W+ SL+LLIAGYT GL++LLRG +LN HCSWC YLSC+PT  W+C
Sbjct: 282 APSAKSKHKPYQYVLWITSLVLLIAGYTAGLVVLLRGTDLNKHCSWCHYLSCIPTSLWSC 341

Query: 383 KAQQLYCQ 390
           K+Q +YC+
Sbjct: 342 KSQNVYCE 349

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297822631|ref|XP_002879198.1| hypothetical protein ARALYDRAFT_481823 [Arabidopsis lyrata subsp. lyrata] gi|297325037|gb|EFH55457.1| hypothetical protein ARALYDRAFT_481823 [Arabidopsis lyrata subsp. lyrata]

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 221/308 (71%), Positives = 256/308 (83%), Gaps = 3/308 (0%)

Query: 83  YSDFLSPFKRHFPWMVPGFVVANIVLFVITMYENNCPQTSATGCLGAKFLGRFSFLPLKD 142
           +++F  PFK  FPW+VP  VVANI LF I+M+ NNCP+ SA     A+FLGRF+F P+K+
Sbjct: 43  FAEF-RPFKLWFPWLVPAIVVANIALFAISMFINNCPKNSAY--CSARFLGRFAFQPMKE 99

Query: 143 NPLLGPSSPALDKMGALTVAKVVTQHQVWRLLTCIWLHGGVFHVLANMLSLLFIGIRLEQ 202
           NPLLGPSS  L+KMGAL V+ VV +H+VWRL TCIWLH GVFHVLANMLSL+FIGIRLEQ
Sbjct: 100 NPLLGPSSLTLEKMGALDVSMVVHKHEVWRLFTCIWLHAGVFHVLANMLSLIFIGIRLEQ 159

Query: 203 EFGFVRIGFLYVLSGFGGSLTSALFIQEGISVGASGALFGLLGAMLSELFTNWTIYANKL 262
           EFGFVRIG LY++SGFGGSL S+LF + GISVGASGALFGLLGAMLSEL TNWTIYANK 
Sbjct: 160 EFGFVRIGLLYMISGFGGSLLSSLFNRAGISVGASGALFGLLGAMLSELLTNWTIYANKF 219

Query: 263 AALLTLIVIISINLAVGILPKVDNFAHIGGFLSGFLLGFVLLIRPQFGWISQKKAPPGYM 322
           AALLTLI II+INLAVGILP VDNFAH+GGF SGFLLGFV LIRPQ+G+ +Q+  P  Y 
Sbjct: 220 AALLTLIFIIAINLAVGILPHVDNFAHLGGFTSGFLLGFVFLIRPQYGYFNQRNNPRSYA 279

Query: 323 INCVKSKHKPYQYVFWVISLILLIAGYTVGLILLLRGGNLNNHCSWCRYLSCVPTPWWNC 382
               KSKHKPYQYV W+ SL+LLIAGYTVGL++LLRG +LN HCSWC YLSC+PT  W+C
Sbjct: 280 APSAKSKHKPYQYVLWITSLLLLIAGYTVGLVVLLRGTDLNKHCSWCHYLSCIPTSLWSC 339

Query: 383 KAQQLYCQ 390
           K+Q  YC+
Sbjct: 340 KSQNDYCE 347

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356547255|ref|XP_003542031.1| PREDICTED: inactive rhomboid protein 1-like [Glycine max]

 Score =  449 bits (1154), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 227/312 (72%), Positives = 253/312 (81%), Gaps = 2/312 (0%)

Query: 81  AMYSDFLSPFKRHFPWMVPGFVVANIVLFVITMYENNCPQTSATGCLGAKFLGRFSFLPL 140
           A++    S FKR FPW+VP FVVANIV+F++TMY N+CP  S  G   A FLGRFSF PL
Sbjct: 40  AVHDRDFSLFKRWFPWLVPTFVVANIVVFIVTMYINDCPNHSFYGSCVASFLGRFSFQPL 99

Query: 141 KDNPLLGPSSPALDKMGALTVAKVVTQHQVWRLLTCIWLHGGVFHVLANMLSLLFIGIRL 200
           K+NPLLGPSS  L+KMGAL V KV+  HQVWRL +CIWLHGGV HVLANMLSL+FIGIRL
Sbjct: 100 KENPLLGPSSSTLEKMGALEVGKVIHGHQVWRLFSCIWLHGGVVHVLANMLSLVFIGIRL 159

Query: 201 EQEFGFVRIGFLYVLSGFGGSLTSALFIQEGISVGASGALFGLLGAMLSELFTNWTIYAN 260
           EQEFGFVRIGFLYV+SGFGGSL SALFIQEGISVGASGALFGLLG MLSEL  NWTIYAN
Sbjct: 160 EQEFGFVRIGFLYVISGFGGSLLSALFIQEGISVGASGALFGLLGGMLSELLINWTIYAN 219

Query: 261 KLAALLTLIVIISINLAVGILPKVDNFAHIGGFLSGFLLGFVLLIRPQFGWIS--QKKAP 318
           K AALLTLIVI+ INLA+G+LP VDNFAHIGGF+SGF LGF+ LIRPQF W+S   + + 
Sbjct: 220 KFAALLTLIVIVVINLAIGVLPHVDNFAHIGGFVSGFFLGFIFLIRPQFKWVSSRHRNSH 279

Query: 319 PGYMINCVKSKHKPYQYVFWVISLILLIAGYTVGLILLLRGGNLNNHCSWCRYLSCVPTP 378
                  VK KHKPYQY  WVIS ILLIAG   GL+LLLRG NLN+ CSWC YLSCVPT 
Sbjct: 280 STAAAPSVKYKHKPYQYALWVISFILLIAGLVTGLVLLLRGVNLNDRCSWCHYLSCVPTS 339

Query: 379 WWNCKAQQLYCQ 390
            W+CK+QQLYC+
Sbjct: 340 KWSCKSQQLYCE 351

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356557429|ref|XP_003547018.1| PREDICTED: inactive rhomboid protein 1-like [Glycine max]

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 227/308 (73%), Positives = 252/308 (81%), Gaps = 3/308 (0%)

Query: 85  DFLSPFKRHFPWMVPGFVVANIVLFVITMYENNCPQTSATGCLGAKFLGRFSFLPLKDNP 144
           DF S FKR FPW+VP FVVANIV+F++TMY N+CP+ S  G   A FLGRFSF PLK+NP
Sbjct: 42  DF-SLFKRWFPWLVPTFVVANIVVFIVTMYINDCPKHSFYGSCVASFLGRFSFQPLKENP 100

Query: 145 LLGPSSPALDKMGALTVAKVVTQHQVWRLLTCIWLHGGVFHVLANMLSLLFIGIRLEQEF 204
           L GPSS  L+KMGAL V KV+ +HQVWRL +CIWLHGGV H+LANMLSL+FIGIRLEQEF
Sbjct: 101 LFGPSSSTLEKMGALEVGKVIHRHQVWRLFSCIWLHGGVVHLLANMLSLVFIGIRLEQEF 160

Query: 205 GFVRIGFLYVLSGFGGSLTSALFIQEGISVGASGALFGLLGAMLSELFTNWTIYANKLAA 264
           GFVRIGFLYV+SGFGGSL SALFIQEGISVGASGALFGLLG MLSEL  NWTIYANK AA
Sbjct: 161 GFVRIGFLYVISGFGGSLLSALFIQEGISVGASGALFGLLGGMLSELLINWTIYANKFAA 220

Query: 265 LLTLIVIISINLAVGILPKVDNFAHIGGFLSGFLLGFVLLIRPQFGWISQKKAPPGYMIN 324
           LLTLIVI+ INLAVGILP VDNFAHIGGF+SGFLLGF+ LIRPQF W+S +         
Sbjct: 221 LLTLIVIVVINLAVGILPHVDNFAHIGGFVSGFLLGFIFLIRPQFKWVSSRHRNSHSSAA 280

Query: 325 C--VKSKHKPYQYVFWVISLILLIAGYTVGLILLLRGGNLNNHCSWCRYLSCVPTPWWNC 382
              VK KHKPYQY  WVIS ILLIAG   GL+LLLR  NLN+ CSWC YLSC+PT  W+C
Sbjct: 281 APSVKYKHKPYQYALWVISFILLIAGLVTGLVLLLRSANLNDRCSWCHYLSCIPTSKWSC 340

Query: 383 KAQQLYCQ 390
           K+QQLYC+
Sbjct: 341 KSQQLYCE 348

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255584755|ref|XP_002533096.1| KOM, putative [Ricinus communis] gi|223527108|gb|EEF29288.1| KOM, putative [Ricinus communis]

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 236/373 (63%), Positives = 271/373 (72%), Gaps = 37/373 (9%)

Query: 20  PRPRPPPPLEAASSPAETESTSSTTTATATRRTSVSSQGGASSSSSPRPASTAPPRGIPE 79
           P  + PPPL   S+P           A+  ++ +VSS G                     
Sbjct: 29  PVGQSPPPLSKGSTPLPV-------VASHNQQQNVSSAGE-------------------- 61

Query: 80  TAMYSDFLSPFKRHFPWMVPGFVVANIVLFVITMYENNCPQTSA--TGCLGAKFLGRFSF 137
                    PF+R  PW+VP FV AN+VLFV TMY NNCP  S     C+ AKFLGRFSF
Sbjct: 62  -------FRPFRRWLPWLVPLFVGANVVLFVTTMYVNNCPSNSMKPESCI-AKFLGRFSF 113

Query: 138 LPLKDNPLLGPSSPALDKMGALTVAKVVTQHQVWRLLTCIWLHGGVFHVLANMLSLLFIG 197
            P+K+NPLLGPSS  L+KMGAL V KVV  HQ WRLL+C+WLH GVFH+LANMLSL+FIG
Sbjct: 114 QPMKENPLLGPSSSTLEKMGALDVDKVVDGHQAWRLLSCMWLHAGVFHILANMLSLVFIG 173

Query: 198 IRLEQEFGFVRIGFLYVLSGFGGSLTSALFIQEGISVGASGALFGLLGAMLSELFTNWTI 257
           IRLEQEFGF+RIG +YV+SGFGGSL SALFIQ  ISVGASGALFGLLG MLSEL TNWTI
Sbjct: 174 IRLEQEFGFIRIGLVYVISGFGGSLLSALFIQSNISVGASGALFGLLGGMLSELITNWTI 233

Query: 258 YANKLAALLTLIVIISINLAVGILPKVDNFAHIGGFLSGFLLGFVLLIRPQFGWISQKKA 317
           YANKLAALLTL++II INLAVGILP VDNFAHIGGF SGFLLGFV LIRPQFGW++QK  
Sbjct: 234 YANKLAALLTLVLIIIINLAVGILPHVDNFAHIGGFFSGFLLGFVFLIRPQFGWVNQKAC 293

Query: 318 PPGYMINCVKSKHKPYQYVFWVISLILLIAGYTVGLILLLRGGNLNNHCSWCRYLSCVPT 377
           PPGY+    KSKHK YQYV WV+S+ILLI G+ VGL+ LLRG NLN+HCSWC Y+SCVPT
Sbjct: 294 PPGYIAPPAKSKHKTYQYVLWVVSVILLIVGFAVGLVTLLRGTNLNDHCSWCHYMSCVPT 353

Query: 378 PWWNCKAQQLYCQ 390
             W+CK+ ++ C 
Sbjct: 354 SLWSCKSSRVDCN 366

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449455106|ref|XP_004145294.1| PREDICTED: inactive rhomboid protein 1-like [Cucumis sativus] gi|449473549|ref|XP_004153913.1| PREDICTED: inactive rhomboid protein 1-like [Cucumis sativus] gi|449508492|ref|XP_004163327.1| PREDICTED: inactive rhomboid protein 1-like [Cucumis sativus]

 Score =  442 bits (1138), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 231/356 (64%), Positives = 274/356 (76%), Gaps = 14/356 (3%)

Query: 35  AETESTSSTTTATATRRTSVSSQGGASSSSSPRPASTAPPRGIPETAMYSDFLSPFKRHF 94
           A  + T+       +R      Q  A+ S   RP+ T+P     E   Y     PFK+  
Sbjct: 2   ARDKPTAGIEIKVHSRHGEHEVQPAAARS---RPSGTSPI----EFGQYR----PFKKWV 50

Query: 95  PWMVPGFVVANIVLFVITMYENNCPQTSATGCLGAKFLGRFSFLPLKDNPLLGPSSPALD 154
           PW+VP FVVAN V+F I+MY N+CP+ SA+ C+G +FLGRFSF PLK+NPLLGPSS  L+
Sbjct: 51  PWLVPVFVVANSVMFTISMYVNDCPKNSAS-CIG-RFLGRFSFQPLKENPLLGPSSSTLE 108

Query: 155 KMGALTVAKVVTQHQVWRLLTCIWLHGGVFHVLANMLSLLFIGIRLEQEFGFVRIGFLYV 214
           KMGAL V KVV  HQ WRL++C+WLH GVFH+LANMLSL+FIGIRLEQEFGFVRIG LY+
Sbjct: 109 KMGALEVDKVVYGHQAWRLISCLWLHAGVFHILANMLSLVFIGIRLEQEFGFVRIGMLYI 168

Query: 215 LSGFGGSLTSALFIQEGISVGASGALFGLLGAMLSELFTNWTIYANKLAALLTLIVIISI 274
           +SGFGGSL SALFIQ GISVGASGALFGLLG MLSEL TNWTIYANKLAALLTL+ II I
Sbjct: 169 VSGFGGSLMSALFIQSGISVGASGALFGLLGGMLSELLTNWTIYANKLAALLTLLFIIVI 228

Query: 275 NLAVGILPKVDNFAHIGGFLSGFLLGFVLLIRPQFGWISQKKAPPGYMINCVKSKHKPYQ 334
           NLAVG+LP VDNFAHIGGF+SGFLLGFV L+RPQFGW+SQ+ AP G   +  KSK+KPYQ
Sbjct: 229 NLAVGVLPHVDNFAHIGGFISGFLLGFVFLVRPQFGWVSQRNAPRGNS-STSKSKYKPYQ 287

Query: 335 YVFWVISLILLIAGYTVGLILLLRGGNLNNHCSWCRYLSCVPTPWWNCKAQQLYCQ 390
           YV WV+SL+LLIAG+ VGL+ L RG N+N+ CSWC YLSC+PT  W+C +Q+  C+
Sbjct: 288 YVLWVVSLVLLIAGFAVGLVFLFRGENMNDRCSWCHYLSCIPTSKWSCNSQKFSCE 343

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224104429|ref|XP_002313433.1| predicted protein [Populus trichocarpa] gi|222849841|gb|EEE87388.1| predicted protein [Populus trichocarpa]

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 212/294 (72%), Positives = 245/294 (83%), Gaps = 2/294 (0%)

Query: 91  KRHFPWMVPGFVVANIVLFVITMYENNCPQTSATGCLGAKFLGRFSFLPLKDNPLLGPSS 150
           K   PW+VP FVVAN+ +F+  MY N+CP  S + C+ A  LGRFSF PLK+NPLLGPSS
Sbjct: 1   KNWVPWLVPLFVVANVAVFIAVMYVNDCPSNSGS-CV-APSLGRFSFQPLKENPLLGPSS 58

Query: 151 PALDKMGALTVAKVVTQHQVWRLLTCIWLHGGVFHVLANMLSLLFIGIRLEQEFGFVRIG 210
             L+KMGAL V +VV +HQ WRL++CIWLH GVFHVLANMLSLLFIGIRLEQEFGF+R+G
Sbjct: 59  STLEKMGALDVNRVVHKHQSWRLISCIWLHAGVFHVLANMLSLLFIGIRLEQEFGFLRVG 118

Query: 211 FLYVLSGFGGSLTSALFIQEGISVGASGALFGLLGAMLSELFTNWTIYANKLAALLTLIV 270
            +YV+SGFGGSL SALFIQ GISVGASGALFGLLG MLSEL TNWTIYANK AALLTL+ 
Sbjct: 119 LVYVISGFGGSLLSALFIQTGISVGASGALFGLLGGMLSELITNWTIYANKFAALLTLLC 178

Query: 271 IISINLAVGILPKVDNFAHIGGFLSGFLLGFVLLIRPQFGWISQKKAPPGYMINCVKSKH 330
           II++NLAVG+LP VDNFAHIGGFLSGF LGFV LIRPQF WI+QK  PPGY+    +SKH
Sbjct: 179 IIAVNLAVGLLPHVDNFAHIGGFLSGFFLGFVFLIRPQFKWINQKTCPPGYIAPPAQSKH 238

Query: 331 KPYQYVFWVISLILLIAGYTVGLILLLRGGNLNNHCSWCRYLSCVPTPWWNCKA 384
           + YQYV WVISLI+LI G+T+GL+ L RG N+NN+CSWC YLSCVPT  W+CK+
Sbjct: 239 QTYQYVLWVISLIVLIIGFTLGLVALFRGVNVNNNCSWCHYLSCVPTSLWSCKS 292

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224054696|ref|XP_002298351.1| predicted protein [Populus trichocarpa] gi|222845609|gb|EEE83156.1| predicted protein [Populus trichocarpa]

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 211/295 (71%), Positives = 244/295 (82%), Gaps = 2/295 (0%)

Query: 90  FKRHFPWMVPGFVVANIVLFVITMYENNCPQTSATGCLGAKFLGRFSFLPLKDNPLLGPS 149
           FK+  PW+VP FVV+NI +F+  MY N+CP  S + C+ A  LGRFSF PLK+NPLLGPS
Sbjct: 36  FKKWVPWLVPLFVVSNIAVFIAVMYVNDCPTNSGS-CV-APSLGRFSFQPLKENPLLGPS 93

Query: 150 SPALDKMGALTVAKVVTQHQVWRLLTCIWLHGGVFHVLANMLSLLFIGIRLEQEFGFVRI 209
           S  L KMGAL VA+VV +HQ WRL++CIWLH GVFHV+ANMLSLL IGIRLEQEFGF RI
Sbjct: 94  SSTLVKMGALDVARVVNKHQSWRLISCIWLHAGVFHVVANMLSLLLIGIRLEQEFGFFRI 153

Query: 210 GFLYVLSGFGGSLTSALFIQEGISVGASGALFGLLGAMLSELFTNWTIYANKLAALLTLI 269
           G +YV+SGFGGSL SALFIQ GISVGASGALFGLLG MLSEL TNWTIYANK AAL TL+
Sbjct: 154 GLVYVISGFGGSLLSALFIQTGISVGASGALFGLLGGMLSELITNWTIYANKSAALTTLL 213

Query: 270 VIISINLAVGILPKVDNFAHIGGFLSGFLLGFVLLIRPQFGWISQKKAPPGYMINCVKSK 329
            II+INLAVG+LP VDN+AHIGGFLSGF LGFV LIRPQF WI+QK  PPGY+    KSK
Sbjct: 214 CIIAINLAVGLLPHVDNYAHIGGFLSGFFLGFVFLIRPQFKWINQKACPPGYIAPPAKSK 273

Query: 330 HKPYQYVFWVISLILLIAGYTVGLILLLRGGNLNNHCSWCRYLSCVPTPWWNCKA 384
           HK YQYV WV+SLI++I G+T+G++ LLRG N+N+HCSWC YLSCVPT  W+C +
Sbjct: 274 HKAYQYVLWVVSLIVIIIGFTLGMVALLRGVNVNDHCSWCHYLSCVPTSLWSCNS 328

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	390
TAIR|locus:2066102	389	RBL1 "RHOMBOID-like 1" [Arabid	0.792	0.794	0.599	2.4e-99
TAIR|locus:2084465	394	RBL4 "RHOMBOID-like protein 4"	0.751	0.743	0.493	6.8e-79
TAIR|locus:2182925	346	RBL3 "RHOMBOID-like protein 3"	0.728	0.820	0.522	2.3e-78
TAIR|locus:2015193	317	RBL2 "RHOMBOID-like 2" [Arabid	0.717	0.883	0.501	4.3e-77
TAIR|locus:2195067	307	RBL6 "RHOMBOID-like protein 6"	0.728	0.925	0.451	4.4e-68
TAIR|locus:2127258	313	RBL7 "RHOMBOID-like protein 7"	0.717	0.894	0.451	2.6e-63
TAIR|locus:2035190	309	RBL5 "RHOMBOID-like protein 5"	0.646	0.815	0.496	4.8e-62
TAIR|locus:2029376	351	KOM "KOMPEITO" [Arabidopsis th	0.753	0.837	0.352	2.6e-47
DICTYBASE|DDB_G0295849	489	DDB_G0295849 "rhomboid family	0.392	0.312	0.348	8e-22
CGD|CAL0003539	669	RBD1 [Candida albicans (taxid:	0.312	0.182	0.325	7.8e-16

TAIR|locus:2066102 RBL1 "RHOMBOID-like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 986 (352.1 bits), Expect = 2.4e-99, P = 2.4e-99
 Identities = 187/312 (59%), Positives = 221/312 (70%)

Query:    79 ETAMYSDFLSPFKRHFPWMVPGFVVANIVLFVITMYENNCPQTSATGCLGAKFLGRFSFL 138
             + A +++F  PFK  FPW+VP  VVANI LF I+M+ NNCP+ SA  CL A+FLGRF+F 
Sbjct:    41 QRASFAEF-RPFKLWFPWLVPAIVVANIALFAISMFINNCPKNSAY-CL-ARFLGRFAFQ 97

Query:   139 PLKDNPLLGPSSPALDKMGALTVAKVVTQHQVWRLLTCIWLHGGVFHVLANMLSLLFIGI 198
             P+K+NPLLGPSS  L+KMGAL V+ VV +H+VWRL TCIWLH GVFHVLANMLSL+FIGI
Sbjct:    98 PMKENPLLGPSSLTLEKMGALDVSMVVHKHEVWRLFTCIWLHAGVFHVLANMLSLIFIGI 157

Query:   199 RLEQEFGFVRIGFLYVLSGFGGSLTSALFIQEGIXXXXXXXXXXXXXXXXXELFTNWTIY 258
             RLEQEFGFVRIG LY++SGFGGSL S+LF + GI                 EL TNWTIY
Sbjct:   158 RLEQEFGFVRIGLLYMISGFGGSLLSSLFNRAGISVGASGALFGLLGAMLSELLTNWTIY 217

Query:   259 ANKLAALLTLIVIISINLAVGILPKVDNFAHIXXXXXXXXXXXXXXIRPQFGWISQKKAP 318
             ANK AALLTLI II+INLAVGILP VDNFAH+              IRPQ+G+ +Q+  P
Sbjct:   218 ANKFAALLTLIFIIAINLAVGILPHVDNFAHLGGFTSGFLLGFVFLIRPQYGYFNQRNNP 277

Query:   319 PGYMINCVKSKHKPYQYVFWVISLILLIAGYTVXXXXXXXXXXXXXHCSWCRYLSCVPTP 378
              GY     KSKHKPYQYV W+ SL+LLIAGYT              HCSWC YLSC+PT 
Sbjct:   278 RGYAAPSAKSKHKPYQYVLWITSLVLLIAGYTAGLVVLLRGTDLNKHCSWCHYLSCIPTS 337

Query:   379 WWNCKAQQLYCQ 390
              W+CK+Q +YC+
Sbjct:   338 LWSCKSQNVYCE 349

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IDA

TAIR|locus:2084465 RBL4 "RHOMBOID-like protein 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 793 (284.2 bits), Expect = 6.8e-79, P = 6.8e-79
 Identities = 148/300 (49%), Positives = 191/300 (63%)

Query:    90 FKRHFPWMVPGFVVANIVLFVITMYENNCPQTSATGCLGAKFLGRFSFLPLKDNPLLGPS 149
             F+  FPW++P FVVAN+ +FVITMY NNCP+ S   C  A FLGRFSF   ++NPLLGPS
Sbjct:    61 FRSWFPWLIPCFVVANVAVFVITMYVNNCPKKSGD-CF-ADFLGRFSFQNTRENPLLGPS 118

Query:   150 SPALDKMGALTVAKVVTQHQVWRLLTCIWLHGGVFHVLANMLSLLFIGIRLEQEFGFVRI 209
             S  L  MG L V KVV   + WRLL+C WLHGGV H+L NML+LLFIGIR+E+EFGF+RI
Sbjct:   119 SLTLQTMGGLDVKKVVKGDEGWRLLSCNWLHGGVVHLLMNMLTLLFIGIRMEREFGFIRI 178

Query:   210 GFLYVLSGFGGSLTSALFIQEGIXXXXXXXXXXXXXXXXXELFTNWTIYANKLAALLTLI 269
             G LY++SGFGGS+ SALF++  I                 E+F NWTIY+NK+  ++TL+
Sbjct:   179 GLLYLISGFGGSILSALFLRSNISVGASGAVFGLLGGMLSEIFINWTIYSNKVVTIVTLV 238

Query:   270 VIISINLAVGILPKVDNFAHIXXXXXXXXXXXXXXIRPQFGWISQKKAPPGYMINCVKSK 329
             +I+++NL +G+LP VDNFAHI              IRP +GWI+Q+  P          +
Sbjct:   239 LIVAVNLGLGVLPGVDNFAHIGGFATGFLLGFVLLIRPHYGWINQRNGP-----GAKPHR 293

Query:   330 HKPYQYVFWVISLILLIAGYTVXXXXXXXXXXXXXHCSWCRYLSCVPTPWWNCKAQQLYC 389
              K YQ + W ISL++L+AG+ V             HCSWC YLSCVPT  W+C  +   C
Sbjct:   294 FKIYQGILWTISLLILVAGFIVGLISLFNNVDGNEHCSWCHYLSCVPTSKWSCNREPASC 353

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2182925 RBL3 "RHOMBOID-like protein 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 788 (282.4 bits), Expect = 2.3e-78, P = 2.3e-78
 Identities = 152/291 (52%), Positives = 190/291 (65%)

Query:    96 WMVPGFVVANIVLFVITMYENNCPQTSAT----GCLGAKFLGRFSFLPLKDNPLLGPSSP 151
             W+VP FVVAN+ +FV+ M+ NNCP    +    G   AKFLGR SF PL+ NPL GPSS 
Sbjct:    56 WLVPMFVVANVAVFVVAMFVNNCPNHFESHRLRGHCVAKFLGRLSFEPLRTNPLFGPSSH 115

Query:   152 ALDKMGALTVAKVVTQHQVWRLLTCIWLHGGVFHVLANMLSLLFIGIRLEQEFGFVRIGF 211
              L+K+GAL  +KVV + + WRLLTCIWLH GV H+ ANMLSL+FIGIRLEQ+FGFVRIG 
Sbjct:   116 TLEKLGALEWSKVVEKKEGWRLLTCIWLHAGVIHLGANMLSLVFIGIRLEQQFGFVRIGV 175

Query:   212 LYVLSGFGGSLTSALFIQEGIXXXXXXXXXXXXXXXXXELFTNWTIYANKLAALLTLIVI 271
             +Y+LSG GGS+ S+LFI+  I                 ELFTNWTIY+NK+AALLTL+ +
Sbjct:   176 IYLLSGIGGSVLSSLFIRNSISVGASGALFGLLGSMLSELFTNWTIYSNKIAALLTLLFV 235

Query:   272 ISINLAVGILPKVDNFAHIXXXXXXXXXXXXXXIRPQFGWISQKKAPPGYMINCVKSKHK 331
             I INLA+GILP VDNFAH+               RPQF W++++  P G  +   + K+K
Sbjct:   236 ILINLAIGILPHVDNFAHVGGFVTGFLLGFILLARPQFKWLAREHMPQGTPL---RYKYK 292

Query:   332 PYQYVFWVISLILLIAGYTVXXXXXXXXXXXXXHCSWCRYLSCVPTPWWNC 382
              YQY+ W++SL+LLIAG+ V             HC WC YL CVPT  W C
Sbjct:   293 TYQYLLWLLSLVLLIAGFVVALLMLFRGENGNDHCRWCHYLRCVPTSSWRC 343

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2015193 RBL2 "RHOMBOID-like 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 776 (278.2 bits), Expect = 4.3e-77, P = 4.3e-77
 Identities = 146/291 (50%), Positives = 190/291 (65%)

Query:    96 WMVPGFVVANIVLFVITMYENNCPQTSATG----CLGAKFLGRFSFLPLKDNPLLGPSSP 151
             W++P  VVAN+ +F+  M+ N+CP+   TG    C+ A+FLGRFSF PLK+NPL GPSS 
Sbjct:    34 WLIPAIVVANLAVFIAVMFVNDCPK-KITGPNKECV-ARFLGRFSFQPLKENPLFGPSSS 91

Query:   152 ALDKMGALTVAKVVTQHQVWRLLTCIWLHGGVFHVLANMLSLLFIGIRLEQEFGFVRIGF 211
              L+KMGAL   KVV +HQ WRLL+C+WLH G+ H+L NMLSL+FIGIRLEQ+FGF+R+G 
Sbjct:    92 TLEKMGALEWRKVVHEHQGWRLLSCMWLHAGIIHLLTNMLSLIFIGIRLEQQFGFIRVGL 151

Query:   212 LYVLSGFGGSLTSALFIQEGIXXXXXXXXXXXXXXXXXELFTNWTIYANKLAALLTLIVI 271
             +Y++SG GGS+ S+LF+QE I                 EL TNWTIYANK AAL+TL+ I
Sbjct:   152 IYLISGLGGSILSSLFLQESISVGASGALFGLLGAMLSELLTNWTIYANKAAALITLLFI 211

Query:   272 ISINLAVGILPKVDNFAHIXXXXXXXXXXXXXXIRPQFGWISQKKAPPGYMINCVKSKHK 331
             I+INLA+G+LP+VDNFAHI              +RPQ+GW + +        +  K K+ 
Sbjct:   212 IAINLALGMLPRVDNFAHIGGFLTGFCLGFVLLVRPQYGWEASRTNT-----SRTKRKYS 266

Query:   332 PYQYVFWVISLILLIAGYTVXXXXXXXXXXXXXHCSWCRYLSCVPTPWWNC 382
              YQYV +V+S++LL+ G TV             HC WC YLSC PT  W C
Sbjct:   267 MYQYVLFVVSVVLLVVGLTVALVMLFKGENGNKHCKWCHYLSCFPTSKWTC 317

GO:0004252 "serine-type endopeptidase activity" evidence=IEA;IDA

GO:0006508 "proteolysis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2195067 RBL6 "RHOMBOID-like protein 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 691 (248.3 bits), Expect = 4.4e-68, P = 4.4e-68
 Identities = 131/290 (45%), Positives = 179/290 (61%)

Query:    96 WMVPGFVVANIVLFVITMYENNCPQTSATGCLG---AKFLGRFSFLPLKDNPLLGPSSPA 152
             W+ P  VVAN+ +F++ MY N+CP+T+ TG  G   AK L RFSF PL++NP LGPSS  
Sbjct:    21 WLTPTIVVANVSIFIVVMYTNDCPKTT-TGANGDCVAKLLRRFSFQPLRENPFLGPSSST 79

Query:   153 LDKMGALTVAKVVTQHQVWRLLTCIWLHGGVFHVLANMLSLLFIGIRLEQEFGFVRIGFL 212
             L+K+GAL   KVV  ++ WRL+T +WLH G+ H++ NM  ++  GIRLEQ+FGF+RIG +
Sbjct:    80 LEKLGALDWKKVVQGNEKWRLITAMWLHAGIIHLVMNMFDVIIFGIRLEQQFGFIRIGLI 139

Query:   213 YVLSGFGGSLTSALFIQEGIXXXXXXXXXXXXXXXXXELFTNWTIYANKLAALLTLIVII 272
             Y++SGFGGS+ SALF+Q+ I                 EL TNWTIY +KL ALL+ + II
Sbjct:   140 YLISGFGGSILSALFLQKSISVGASGALLGLMGAMLSELLTNWTIYKSKLCALLSFLFII 199

Query:   273 SINLAVGILPKVDNFAHIXXXXXXXXXXXXXXIRPQFGWISQKKAPPGYMINCVKSKHKP 332
             +INLA+G+LP VDNFAHI              ++PQ GW   + +   Y     +SK+ P
Sbjct:   200 AINLAIGLLPWVDNFAHIGGLLTGFCLGFILLMQPQSGWEEFRNSSQ-YGARA-RSKYNP 257

Query:   333 YQYVFWVISLILLIAGYTVXXXXXXXXXXXXXHCSWCRYLSCVPTPWWNC 382
              QYV + ++ +L++AG TV             HC WC  L C PT  W+C
Sbjct:   258 CQYVLFFVAAVLVVAGLTVGLVMLFDGENGNKHCKWCHRLDCYPTSKWSC 307

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:2127258 RBL7 "RHOMBOID-like protein 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 646 (232.5 bits), Expect = 2.6e-63, P = 2.6e-63
 Identities = 129/286 (45%), Positives = 169/286 (59%)

Query:    96 WMVPGFVVANIVLFVITMYENNCPQTSATGCLGAKFLGRFSFLPLKDNPLLGPSSPALDK 155
             W++P  V+AN+V+FV+ MY N+CP  S   CL AKFLGRFSF   K NPLLGPSS  L+K
Sbjct:    32 WIIPIVVIANVVVFVVVMYYNDCPHKSHR-CL-AKFLGRFSFESFKSNPLLGPSSSTLEK 89

Query:   156 MGALTVAKVVTQHQVWRLLTCIWLHGGVFHVLANMLSLLFIGIRLEQEFGFVRIGFLYVL 215
             MGAL   K+V + QVWRLLTC+WLH GV H+LANM  + +IG+RLEQ+FGFVR+G +Y++
Sbjct:    90 MGALAWGKIVHKRQVWRLLTCMWLHAGVIHLLANMCCVAYIGVRLEQQFGFVRVGTIYLV 149

Query:   216 SGFGGSLTSALFIQEGIXXXXXXXXXXXXXXXXXELFTNWTIYANKLAALLTLIVIISIN 275
             SGF GS+ S LF+++ I                 EL  NWT Y NK  A++ L+VI+ +N
Sbjct:   150 SGFCGSILSCLFLEDAISVGASSALFGLLGAMLSELLINWTTYDNKGVAIVMLLVIVGVN 209

Query:   276 LAVGILPKVDNFAHIXXXXXXXXXXXXXXIRPQFGWI-SQKKAPPGYMINCVKSKHKPYQ 334
             L +G LP VDNFAHI              I PQF W  +Q    PG +   VK K+   Q
Sbjct:   210 LGLGTLPPVDNFAHIGGFFGGFLLGFLLLIHPQFEWEENQVSLMPGTI---VKPKYNTCQ 266

Query:   335 YVFWVISLILLIAGYTVXXXXXXXXXXXXXHCSWCRYLSCVPTPWW 380
              V  +++ I+ +AG+T              +C WC  LS      W
Sbjct:   267 LVLCIVASIVFVAGFTSGLVILFRGDSLNRYCKWCHKLSYSSKSQW 312

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:2035190 RBL5 "RHOMBOID-like protein 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 634 (228.2 bits), Expect = 4.8e-62, P = 4.8e-62
 Identities = 127/256 (49%), Positives = 164/256 (64%)

Query:    96 WMVPGFVVANIVLFVITMYENNCPQTSATGCLGAKFLGRFSFLPLKDNPLLGPSSPALDK 155
             W+VP  + AN V F  TMY N+CP  S   CL    LGR SF P+K+N LLGPS P L K
Sbjct:    34 WLVPLILAANFVTFATTMYVNDCPARSDE-CLLFDVLGRLSFQPIKENMLLGPSIPTLRK 92

Query:   156 MGALTVAKVVTQHQVWRLLTCIWLHGGVFHVLANMLSLLFIGIRLEQEFGFVRIGFLYVL 215
             +GAL   ++V + + WRL++CIWLHGG  H++ANM+SL+ IG+RLEQEFGF+RIG LYV+
Sbjct:    93 LGALE-RRLVEEGERWRLISCIWLHGGFLHLMANMISLMCIGMRLEQEFGFMRIGALYVI 151

Query:   216 SGFGGSLTSALFIQEG--IXXXXXXXXXXXXXXXXXELFTNWTIYANKLAALLTLIVIIS 273
             SG GGSL S L   +G  +                 EL TNWTIY NK  AL+TLI+II 
Sbjct:   152 SGLGGSLVSCLTDSQGERVSVGASGALFGLLGAMLSELITNWTIYENKCTALMTLILIIV 211

Query:   274 INLAVGILPKVDNFAHIXXXXXXXXXXXXXXIRPQFGWISQKKAPPGYMINCVKSKHKPY 333
             +NL+VG LP+VDN AH               +RPQ+G+++ K  PPGY +   KSKHK Y
Sbjct:   212 LNLSVGFLPRVDNSAHFGGFLAGFFLGFVLLLRPQYGYVNPKYIPPGYDMKHKKSKHKCY 271

Query:   334 QYVFWVISLILLIAGY 349
             Q++F   SL +L+AG+
Sbjct:   272 QHIFRFTSLAILLAGF 287

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:2029376 KOM "KOMPEITO" [Arabidopsis thaliana (taxid:3702)]

 Score = 495 (179.3 bits), Expect = 2.6e-47, P = 2.6e-47
 Identities = 105/298 (35%), Positives = 151/298 (50%)

Query:    96 WMVPGFVVANIVLFVITMYENNCPQTSATGCLGAKFLGRFSFLPLKDNPLLGPSSPALDK 155
             W+V  FV+  IVLF +TM  N+C   S   C  AK LGRFSF  L +NP+LGPS+  L+ 
Sbjct:    49 WLVSVFVLLQIVLFAVTMGVNDCSGNSHGHC-SAKLLGRFSFQSLSENPMLGPSASTLEH 107

Query:   156 MGALTVAKVVTQHQVWRLLTCIWLHGGVFHVLANMLSLLFIGIRLEQEFGFVRIGFLYVL 215
             MG L+   +   H++WR+LT  WLH G+FH+  N+ SL+F+GI +EQ+FG +RI  +Y L
Sbjct:   108 MGGLSWKALTENHEIWRILTSPWLHSGLFHLFINLGSLIFVGIYMEQQFGPLRIAVIYFL 167

Query:   216 SGFGGSLTSALFIQEGIXXXXXXXXXXXXXXXXXELFTNWTIYANKLAALLTLIVIISIN 275
             SG  GSL + LF++                     L  NW +Y +K++AL  +  I ++N
Sbjct:   168 SGIMGSLFAVLFVRNIPSISSGAAFFGLIGAMLSALAKNWNLYNSKISALAIIFTIFTVN 227

Query:   276 LAVGILPKVDNFAHIXXXXXXXXXXXXXXIRPQFGWI--SQK-KAPPGYMINCVKSKHKP 332
               +G LP +DNFA+I               +PQ   +  S K K     M    + K + 
Sbjct:   228 FLIGFLPFIDNFANIGGFISGFLLGFVLLFKPQLRQMPPSHKGKLFEDDMNRSTRLKEQF 287

Query:   333 YQYVFWVISLILLIAGYTVXXXXXXXXXXXXXHCSWCRYLSCVPTPWWNCKAQQLYCQ 390
              + V  +I L++                    HC WCRY+ CVPT  W+C      C+
Sbjct:   288 DRPVLRIICLLVFCGILAGVLLAACWGVNLNRHCHWCRYVDCVPTKKWSCSDMTTSCE 345

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

DICTYBASE|DDB_G0295849 DDB_G0295849 "rhomboid family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 237 (88.5 bits), Expect = 8.0e-22, Sum P(2) = 8.0e-22
 Identities = 54/155 (34%), Positives = 83/155 (53%)

Query:   137 FLPLKDNPLLGPSSPALDKMGALTVAKVVTQHQVWRLLTCIWLHGGVFHVLANMLSLLFI 196
             F P K NP  GP+S  L  +GA   + ++   + WR  T I+LH G+FH L NM++ L +
Sbjct:   261 FEPWKTNPWFGPNSYTLLDVGA-KYSPLILNGEWWRFFTPIFLHVGIFHYLMNMVTQLRV 319

Query:   197 GIRLEQEFGFVRIGFLYVLSGFGGSLTSALFIQEGIXXXXXXXXXXXXXXXXXELFTNWT 256
             G++LE+ +G  RI  +Y+L G  G+L SA+ +   +                 +L  NW+
Sbjct:   320 GMQLERAYGGHRIVPIYLLCGVAGNLCSAIMLPNSVQVGASGAIFGFLGVLLTDLIRNWS 379

Query:   257 IYANKLAALLTLIVIISINLAVGI-LPKVDNFAHI 290
             + A       +L+  I  + AVG+ LP VDNFAH+
Sbjct:   380 VLAKPWLNFGSLLFSIITSFAVGLFLPGVDNFAHL 414

GO:0016021 "integral to membrane" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0008236 "serine-type peptidase activity" evidence=ISS

CGD|CAL0003539 RBD1 [Candida albicans (taxid:5476)]

 Score = 176 (67.0 bits), Expect = 7.8e-16, Sum P(3) = 7.8e-16
 Identities = 42/129 (32%), Positives = 64/129 (49%)

Query:   169 QVWRLLTCIWLHGGVFHVLANMLSLLFIGIRLEQEFGFVRIGFLYVLSGFGGSLTSALFI 228
             Q +R+   I+LH G  H++ N+L  + +G  +E+  G ++   +Y+ SG GG L  A F 
Sbjct:   308 QWYRIFIPIFLHAGFLHIIFNLLLQVTMGSSIERNIGIIKYAIIYISSGIGGFLLGANFT 367

Query:   229 QEGIXXXXXXXXXXXXXXXXXELFT-----NWTIYANKLAALLTLIVI--ISINLAVGIL 281
              +GI                  LF      N  +Y  K  AL   I+I  I I+L +G+L
Sbjct:   368 PQGIASTGASGALFGIVATNIILFIYTGKKNTNMYGTKHYALFICIMIGEIVISLVLGLL 427

Query:   282 PKVDNFAHI 290
             P +DNF+HI
Sbjct:   428 PGLDNFSHI 436

GO:0044182 "filamentous growth of a population of unicellular organisms" evidence=IMP

GO:1900429 "negative regulation of filamentous growth of a population of unicellular organisms" evidence=IMP

GO:0030447 "filamentous growth" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.21	0.691
3rd Layer	3.4.21.105	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	390
pfam01694	146	pfam01694, Rhomboid, Rhomboid family	2e-48
COG0705	228	COG0705, COG0705, Membrane associated serine prote	3e-26
PTZ00101	278	PTZ00101, PTZ00101, rhomboid-1 protease; Provision	9e-20
TIGR03902	154	TIGR03902, rhom_GG_sort, rhomboid family GlyGly-CT	1e-08
TIGR04239	271	TIGR04239, rhombo_GlpG, rhomboid family protease G	0.002
PHA03201	318	PHA03201, PHA03201, uracil DNA glycosylase; Provis	0.003

>gnl|CDD|216649 pfam01694, Rhomboid, Rhomboid family

 Score =  160 bits (408), Expect = 2e-48
 Identities = 78/146 (53%), Positives = 100/146 (68%), Gaps = 1/146 (0%)

Query: 164 VVTQHQVWRLLTCIWLHGGVFHVLANMLSLLFIGIRLEQEFGFVRIGFLYVLSGFGGSLT 223
           ++ + Q+WRL+T ++LH G  H+L NML+LLF GI LE+  G VR   LY+LSG  GSL 
Sbjct: 1   LLQRGQLWRLITSMFLHAGWLHLLFNMLALLFFGIPLERILGSVRFLLLYLLSGLAGSLL 60

Query: 224 SALFIQEGI-SVGASGALFGLLGAMLSELFTNWTIYANKLAALLTLIVIISINLAVGILP 282
           S LF      SVGASGA+FGLLGA+L  L  N  +  N   ALL L+ II +NL +G LP
Sbjct: 61  SYLFSPASSPSVGASGAIFGLLGALLVLLPRNRILLFNFPGALLLLLGIILLNLLLGFLP 120

Query: 283 KVDNFAHIGGFLSGFLLGFVLLIRPQ 308
            + NFAH+GG ++G LLGF+LL RPQ
Sbjct: 121 GISNFAHLGGLIAGLLLGFLLLRRPQ 146

This family contains integral membrane proteins that are related to Drosophila rhomboid protein. Members of this family are found in bacteria and eukaryotes. Rhomboid promotes the cleavage of the membrane-anchored TGF-alpha-like growth factor Spitz, allowing it to activate the Drosophila EGF receptor. Analysis has shown that Rhomboid-1 is an intramembrane serine protease (EC:3.4.21.105). Parasite-encoded rhomboid enzymes are also important for invasion of host cells by Toxoplasma and the malaria parasite. Length = 146

>gnl|CDD|223777 COG0705, COG0705, Membrane associated serine protease [Amino acid transport and metabolism]

 Score =  104 bits (262), Expect = 3e-26
 Identities = 66/226 (29%), Positives = 97/226 (42%), Gaps = 34/226 (15%)

Query: 87  LSPFKRHFPWMVPGFVVANIVLFVITMYENNCPQTSATGCLGAKFLGRFSFLPLKDNPLL 146
                   P +    ++ NI++F++ +                 +   F    L     L
Sbjct: 9   NPWRLIRAPPVTLFLILLNILVFLLELV--------------LGWSAIFLLTFLFRLFGL 54

Query: 147 GPSSPALDKMGALTVAKVVTQHQVWRLLTCIWLHGGVFHVLANMLSLLFIGIRLEQEFGF 206
            P          L +   + + Q+WRL+T I+LH G  H+L NML+L   G  LE+  G 
Sbjct: 55  YP----------LNLLGALARDQLWRLITAIFLHAGFLHLLFNMLALWVFGSNLERRLGT 104

Query: 207 VRIGFLYVLSGFGGSLTSALFIQEG--ISVGASGALFGLLGAMLSELFTNWTIYANKLAA 264
           +R    Y+LSG    L   LF  +G   S+GASGA+FGLLGA    LF    I    L+ 
Sbjct: 105 LRFLLFYLLSGLLAGLAQVLFGPKGGAPSLGASGAIFGLLGAYFL-LFPFARILLLFLSL 163

Query: 265 LLTLIVIISINLAVGIL-------PKVDNFAHIGGFLSGFLLGFVL 303
               +++I I L   +        P V   AH+GG + G LL  +L
Sbjct: 164 PRPALILILIWLLYSLFSGAGSFGPSVAWSAHLGGLIGGLLLAALL 209

Length = 228

>gnl|CDD|185445 PTZ00101, PTZ00101, rhomboid-1 protease; Provisional

 Score = 88.0 bits (218), Expect = 9e-20
 Identities = 55/164 (33%), Positives = 84/164 (51%), Gaps = 4/164 (2%)

Query: 140 LKDNPLLGPSSPALDKMGALTVAKVVTQHQVWRLLTCIWLHGGVFHVLANMLSLLFIGIR 199
           +K    L PS   L  +GA  VA  + Q ++ RL+  I+LH  +FH   N+   L +G  
Sbjct: 73  IKPADFLTPSDSLLVTLGA-NVASRIKQGEIHRLILPIFLHANIFHTFFNVFFQLRMGFT 131

Query: 200 LEQEFGFVRIGFLYVLSGFGGSLTSALFIQEGISVGASGALFGLLGAMLSELFTNWTIYA 259
           LE+ +G V+I  LY L+G  G++ S+      I VGAS +  GLLG + SEL   W +  
Sbjct: 132 LEKNYGIVKIIILYFLTGIYGNILSSSVTYCPIKVGASTSGMGLLGIVTSELILLWHVIR 191

Query: 260 NKLAALLTLI--VIISINLAVGIL-PKVDNFAHIGGFLSGFLLG 300
           ++   +  +I   +IS           +D+  H+GG LSG  +G
Sbjct: 192 HRERVVFNIIFFSLISFFYYFTFNGSNIDHVGHLGGLLSGISMG 235

Length = 278

>gnl|CDD|234388 TIGR03902, rhom_GG_sort, rhomboid family GlyGly-CTERM serine protease

 Score = 53.4 bits (129), Expect = 1e-08
 Identities = 40/146 (27%), Positives = 60/146 (41%), Gaps = 11/146 (7%)

Query: 165 VTQHQVWRLLTCIWLHGGVFHVLANMLSLLFIGIRLEQEFGFVRIGFLYVLSGFGGSLTS 224
           + + + WRLLT  ++H   +H+L N+  LL + +  E+     R+  L +L     SL  
Sbjct: 11  ILEGEWWRLLTGHFVHLNWWHLLMNLAGLLLLWLLFERHLRARRLLLLLLLLSLLISLGL 70

Query: 225 ALFIQE-GISVGASGALFGLLGA-----MLSELFTNWTIYAN---KLAALLTLIVIISIN 275
            LF+      VG SG L GL        +     + W +      KLA         S  
Sbjct: 71  LLFLPSLQWYVGLSGVLHGLFAWGALRDIRYGRRSGWLLLLGVIAKLAWEQLFGASASTA 130

Query: 276 LAVGILPKVDNFAHIGGFLSGFLLGF 301
             +G     +  AH+ G LSG LL  
Sbjct: 131 ELIGAPVATE--AHLAGALSGLLLAL 154

This model describes a rhomboid-like intramembrane serine protease. Its species distribution closely matches model TIGR03501, GlyGly-CTERM, which describes a protein targeting domain analogous to LPXTG and PEP-CTERM. In a number of species (Ralstonia eutropha ,R. metallidurans, R. solanacearum, Marinobacter aquaeolei, etc) with just one GlyGly-CTERM protein (i.e., a dedicated system), the rhombosortase and GlyGly-CTERM genes are adjacent. Length = 154

>gnl|CDD|234518 TIGR04239, rhombo_GlpG, rhomboid family protease GlpG

 Score = 39.1 bits (92), Expect = 0.002
 Identities = 35/145 (24%), Positives = 65/145 (44%), Gaps = 16/145 (11%)

Query: 166 TQHQVWRLLTCIWLHGGVFHVLANMLSLLFIGIRLEQEFGFVRIGFLYVLSGFGGSLTSA 225
            Q Q+WR  T   LH  + H++ N+L   ++G ++E+  G  ++  L+++S    +    
Sbjct: 131 QQSQLWRWFTPALLHFSLLHIIFNLLWWWYLGGQIEKRLGSGKLLVLFLVSALLSNWAQY 190

Query: 226 LFIQEGISVGA-SGALFGLLGAMLSELFTNWTIYANKLAALL---TLIVIISINLAVG-- 279
           L    G + G  SG ++ L+G      +          + L     L+  + + L +G  
Sbjct: 191 LV--SGPNFGGLSGVVYALVG------YVWLRGERAPESGLGLPRGLMGFMLVWLVLGFF 242

Query: 280 -ILP-KVDNFAHIGGFLSGFLLGFV 302
            +L   + N AH+ G L G L+ F 
Sbjct: 243 DLLGMSIANAAHLAGLLIGLLMAFW 267

GlpG in E. coli is a rhomboid family intramembrane serine protease that has been extensively characterized as a proxy for rhomboid family proteases in animals. It efficiently cleaves eukaryote-derived model substrates. This multiple membrane-spanning protein excludes inappropriate substrates from access to its cleavage site, and shows activity against truncated versions, but not full-length versions, of the E. coli multidrug transporter MdfA. This finding suggests a housekeeping function in removing faulty proteins. In contrast, several eukaryotic rhomboid family proteases release peptide hormones for signaling functions, and the Shewanella and Vibrio protein rhombosortase appears to be part of a protein-sorting system, cleaving a C-terminal anchoring helix domain. Length = 271

>gnl|CDD|165468 PHA03201, PHA03201, uracil DNA glycosylase; Provisional

 Score = 39.1 bits (91), Expect = 0.003
 Identities = 16/69 (23%), Positives = 21/69 (30%), Gaps = 1/69 (1%)

Query: 17 MSSPRPRPPPPLEAASSPAETESTSSTTTATATRRT-SVSSQGGASSSSSPRPASTAPPR 75
          M   R R P P    S P  T   S   +   T  +            ++   A    PR
Sbjct: 1  MKRARSRSPSPPRRPSPPRPTPPRSPDASPEETPPSPPGPGAEPPPGRAAGPAAPRRRPR 60

Query: 76 GIPETAMYS 84
          G P    +S
Sbjct: 61 GCPAGVTFS 69

Length = 318

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	390
KOG2289	316	consensus Rhomboid family proteins [Signal transdu	100.0
PTZ00101	278	rhomboid-1 protease; Provisional	100.0
KOG2290	652	consensus Rhomboid family proteins [Signal transdu	100.0
PRK10907	276	intramembrane serine protease GlpG; Provisional	99.95
COG0705	228	Membrane associated serine protease [Amino acid tr	99.91
PF01694	145	Rhomboid: Rhomboid family; InterPro: IPR022764 In	99.89
KOG2632	258	consensus Rhomboid family proteins [Function unkno	99.65
KOG2980	310	consensus Integral membrane protease of the rhombo	98.91
PF08551	99	DUF1751: Eukaryotic integral membrane protein (DUF	98.19
PF04511	197	DER1: Der1-like family; InterPro: IPR007599 The en	97.82
KOG0858	239	consensus Predicted membrane protein [Function unk	97.63
KOG2890	326	consensus Predicted membrane protein [Function unk	97.08
KOG4463	323	consensus Uncharacterized conserved protein [Funct	95.65
KOG2290	652	consensus Rhomboid family proteins [Signal transdu	93.26
COG5291	313	Predicted membrane protein [Function unknown]	93.21
PF11992	325	DUF3488: Domain of unknown function (DUF3488); Int	81.54

>KOG2289 consensus Rhomboid family proteins [Signal transduction mechanisms]

Probab=100.00  E-value=1.7e-42  Score=333.23  Aligned_cols=277  Identities=55%  Similarity=0.972  Sum_probs=251.2

Q ss_pred             cccCCcHHHHHHHHHHHHHHHHHhhcCCCCCCcCc----ccccccccccccccCCCCCCCCCChhHHHhhcchhhhhhhc
Q 036462           91 KRHFPWMVPGFVVANIVLFVITMYENNCPQTSATG----CLGAKFLGRFSFLPLKDNPLLGPSSPALDKMGALTVAKVVT  166 (390)
Q Consensus        91 ~~~~p~vt~~li~i~v~vfi~~~~~~~~~~~~~g~----~~~~~~~~~~~~~p~~~n~~~gps~~~L~~~Gal~~~~i~~  166 (390)
                      ..+..+.+..+...++..|+..++.++++....+.    |+....+.+|.+++.++||..+|+..+++.+|++...++.+
T Consensus        36 ~~~~~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~f~~~~~~~~l~~f~~~~~~~n~~~~~s~~~~~~~~~~~i~~~~~  115 (316)
T KOG2289|consen   36 RSWTKWLIPRFAVANVPEFIVVMYVNDCPKCCPPPIFMLCLAIVFLGRFSFQGLRENPLLGPSSLTLEKMGGLLIYKPVH  115 (316)
T ss_pred             chhhHHHHhHHHhhccchhheeeeeecccccCCCchhhhhhhhhhhheeeeeeeccCCccCcCCCCccccCCceecChhh
Confidence            46677888999999999998889999998876655    77333899999999999999999999999999999999999


Q ss_pred             CCcchhhhhhhhccccHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhHHhhcCCcceechHHHHHHHHHH
Q 036462          167 QHQVWRLLTCIWLHGGVFHVLANMLSLLFIGIRLEQEFGFVRIGFLYVLSGFGGSLTSALFIQEGISVGASGALFGLLGA  246 (390)
Q Consensus       167 ~~q~wRllTs~FlH~~~~HLl~N~~~l~~~G~~lE~~~G~~r~l~lyl~sgi~g~l~~~l~~~~~~~vGaSgav~Gllg~  246 (390)
                      ++|+||++|++|+|+|+.||++||+.|+++|..+|..+|.+|+.++|+++|++|++++.++.++.++|||||++||++|+
T Consensus       116 r~E~WRllTym~LHaGi~HL~~N~~~ql~iGi~LE~~~G~~RiglIYl~gg~aGSlls~l~d~~~~sVGASggvfaLlgA  195 (316)
T KOG2289|consen  116 RGELWRLLTYMWLHAGIFHLLLNMLSQLFIGIPLEQVHGFLRIGLIYLAGGVAGSLLSSLFDPNSISVGASGGVFALLGA  195 (316)
T ss_pred             hchhHHHHHHHHHhcCHHHHHHHHHHHHhccccHHhhcCceEEeeehhhhhhhhHHHHHHhccCCceecccHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhhhhHHhhHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHhhccccccccccCCCCCCccccc
Q 036462          247 MLSELFTNWTIYANKLAALLTLIVIISINLAVGILPKVDNFAHIGGFLSGFLLGFVLLIRPQFGWISQKKAPPGYMINCV  326 (390)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~i~~~aHLgG~l~G~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (390)
                      +++.++.||..++.+...+..+++++.+++.+|+.+.+|+++|+||++.|..+|++...++++++......     +...
T Consensus       196 ~Ls~l~~Nw~~m~~~~~~l~~ll~Ii~i~l~~G~~~~~~~~~h~gg~~~G~~~~fil~~~g~~~~~~~~~~-----~~~~  270 (316)
T KOG2289|consen  196 HLSNLLTNWTIMKNKFAALRTLLIIIFINLDLGFAPYVDNFAHIGGLLAGFLLGFVLHIGGQLGGITIGLI-----VLRV  270 (316)
T ss_pred             HHHHHHhhHHHhcchHHHHHHHHHHHHHHHhhccccceeccccccccCCCcchhHHhhhccceeEEeccce-----eeec
Confidence            99999999999999998888899999999999999999999999999999999999999999988764332     2223


Q ss_pred             cccCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccceeeeee
Q 036462          327 KSKHKPYQYVFWVISLILLIAGYTVGLILLLRGGNLNNHCSWCRYLSCVP  376 (390)
Q Consensus       327 k~k~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~C~~c~~~~C~p  376 (390)
                      +.|++.+|.+.|+...+.++.++.+.++.++.+    ++|.||+++.|+|
T Consensus       271 ~~~~~~~q~~~w~~~~~~~v~~~~~~~~~if~~----~~~~~~~~~~~~~  316 (316)
T KOG2289|consen  271 FSKRLPYQLLLWIVLLVYLVAGLFASLFNIFDG----KYCLWCHPLSCVP  316 (316)
T ss_pred             cccccccchHHHHHHHHHHHHHHHHHHHHhhcC----CccccccccCCCC
Confidence            445556667888888888898998888888876    7999999999986

>PTZ00101 rhomboid-1 protease; Provisional

Probab=100.00  E-value=5.9e-35  Score=279.04  Aligned_cols=226  Identities=27%  Similarity=0.428  Sum_probs=174.8

Q ss_pred             CCCCcccCCcHHHHHHHHHHHHHHHHHhhcCCCCCCcCcccccccccccccccCCCCCCCCCChhHHHhhcchhhhhhhc
Q 036462           87 LSPFKRHFPWMVPGFVVANIVLFVITMYENNCPQTSATGCLGAKFLGRFSFLPLKDNPLLGPSSPALDKMGALTVAKVVT  166 (390)
Q Consensus        87 r~~~~~~~p~vt~~li~i~v~vfi~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~n~~~gps~~~L~~~Gal~~~~i~~  166 (390)
                      |+.++...+.+|..++++|+++|++.....                         .+..++|+.+.+.++|+++++.+. 
T Consensus        45 r~Fp~f~i~~l~~~Iiii~iivfil~l~~~-------------------------~~~~l~p~~~~L~~~Ga~~~~~i~-   98 (278)
T PTZ00101         45 LIFPHFTWKSFIMAISIIQIIVFIISVSIK-------------------------PADFLTPSDSLLVTLGANVASRIK-   98 (278)
T ss_pred             HHcCCccHHHHHHHHHHHHHHHHHHHHHhc-------------------------ccccCCCCHHHHHHHhCcchhhhh-
Confidence            455778888999999999999999876431                         112457888899999999988775 


Q ss_pred             CCcchhhhhhhhccccHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhHHhhcCCcceechHHHHHHHHHH
Q 036462          167 QHQVWRLLTCIWLHGGVFHVLANMLSLLFIGIRLEQEFGFVRIGFLYVLSGFGGSLTSALFIQEGISVGASGALFGLLGA  246 (390)
Q Consensus       167 ~~q~wRllTs~FlH~~~~HLl~N~~~l~~~G~~lE~~~G~~r~l~lyl~sgi~g~l~~~l~~~~~~~vGaSgav~Gllg~  246 (390)
                      ++||||++|++|+|.|+.|+++||+.++.+|..+|+.+|++|++++|+++|++|++++.++.+...++||||++||++|+
T Consensus        99 ~gq~WRLiT~~FlH~~~~HLl~Nm~~l~~~G~~lE~~~G~~r~~ilYl~sGi~G~l~s~~~~~~~~svGASgAifGLiGa  178 (278)
T PTZ00101         99 QGEIHRLILPIFLHANIFHTFFNVFFQLRMGFTLEKNYGIVKIIILYFLTGIYGNILSSSVTYCPIKVGASTSGMGLLGI  178 (278)
T ss_pred             cCCCHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHccCCcEEehhHHHHHHHHH
Confidence            49999999999999999999999999999999999999999999999999999999999888777899999999999999


Q ss_pred             HHHhhhhhhHHhhHHHHHHHHHHHHHHHHH--hhcc-CCchhHHHHHHHHHHHHHHHHHHhhccccccccccCCCCCCcc
Q 036462          247 MLSELFTNWTIYANKLAALLTLIVIISINL--AVGI-LPKVDNFAHIGGFLSGFLLGFVLLIRPQFGWISQKKAPPGYMI  323 (390)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l--~~~~-~p~i~~~aHLgG~l~G~l~g~~~~~~~~~~~~~~~~~~~~~~~  323 (390)
                      +++.++.+|...+.+......++.+.++.+  .... .+++|++||+||+++|+++|+.+.++.+               
T Consensus       179 ~~~~lil~w~~~~~~~~~~~~~i~~~li~~~l~~~~~g~~Id~~aHlGG~i~G~llg~~~~~~l~---------------  243 (278)
T PTZ00101        179 VTSELILLWHVIRHRERVVFNIIFFSLISFFYYFTFNGSNIDHVGHLGGLLSGISMGILYNSQME---------------  243 (278)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHhhhh---------------
Confidence            998888888765544333322222222222  2222 4789999999999999999998764432               


Q ss_pred             ccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHh
Q 036462          324 NCVKSKHKPYQYVFWVISLILLIAGYTVGLILLLR  358 (390)
Q Consensus       324 ~~~k~k~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  358 (390)
                          .|.+ +-+..++.+..++++..++..+.+|-
T Consensus       244 ----~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~  273 (278)
T PTZ00101        244 ----NKPS-WYDHMKMASYACLALLAIVPPIVLFA  273 (278)
T ss_pred             ----hccc-HHHHHHHHHHHHHHHHHHHhhHheee
Confidence                1212 22345555665666666665555443

>KOG2290 consensus Rhomboid family proteins [Signal transduction mechanisms]

Probab=100.00  E-value=3.7e-34  Score=279.35  Aligned_cols=225  Identities=28%  Similarity=0.544  Sum_probs=187.4

Q ss_pred             CCCCCCCCCChhHHHh-hcchhhhhhhcCCcchhhhhhhhccccHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 036462          140 LKDNPLLGPSSPALDK-MGALTVAKVVTQHQVWRLLTCIWLHGGVFHVLANMLSLLFIGIRLEQEFGFVRIGFLYVLSGF  218 (390)
Q Consensus       140 ~~~n~~~gps~~~L~~-~Gal~~~~i~~~~q~wRllTs~FlH~~~~HLl~N~~~l~~~G~~lE~~~G~~r~l~lyl~sgi  218 (390)
                      +++|..+.....++.. .|.+..-.--.++|+|||+|++|+|+|++|++..+..++.+.+.+|+..|+.|..++|++||+
T Consensus       420 ~HEeAtLCSQVhC~d~VCGllPFln~e~PdQfYRL~~SLFlHagviH~~vSi~FQm~vmrdlEkL~g~~riAIiy~~SGi  499 (652)
T KOG2290|consen  420 FHEEATLCSQVHCFDGVCGLLPFLNPEVPDQFYRLWLSLFLHAGVIHLLVSICFQMTVMRDLEKLAGWHRIAIIYFLSGI  499 (652)
T ss_pred             hhhhhhhhhhhhhhhcccccccccCCCChhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcchhhheeeecccc
Confidence            6788888888888877 455444445567999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhHHhhcCCcceechHHHHHHHHHHHHHhhhhhhHHhhHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHH
Q 036462          219 GGSLTSALFIQEGISVGASGALFGLLGAMLSELFTNWTIYANKLAALLTLIVIISINLAVGILPKVDNFAHIGGFLSGFL  298 (390)
Q Consensus       219 ~g~l~~~l~~~~~~~vGaSgav~Gllg~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~i~~~aHLgG~l~G~l  298 (390)
                      .||+++++|.|+.+.||.||+-+|+++++++.++.+|++..+++.++..++...++.. +|++|++||++|++|+++|++
T Consensus       500 tGNLASAIFlpY~~eVgPa~sQ~Gila~l~vEl~qs~~il~~~w~a~~~Lia~~L~L~-iGliPWiDN~aHlfG~i~GLl  578 (652)
T KOG2290|consen  500 TGNLASAIFLPYRAEVGPAGSQFGILACLFVELFQSWQILERPWRAFFHLIATLLVLC-IGLIPWIDNWAHLFGTIFGLL  578 (652)
T ss_pred             cccchheeeeccccccCCcccccchHHHHHHHHHhhhHhhhhHHHHHHHHHHHHHHHH-hccccchhhHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999998887776555544 499999999999999999999


Q ss_pred             HHHHHhhccccccccccCCCCCCccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccceeeeeeCC
Q 036462          299 LGFVLLIRPQFGWISQKKAPPGYMINCVKSKHKPYQYVFWVISLILLIAGYTVGLILLLRGGNLNNHCSWCRYLSCVPTP  378 (390)
Q Consensus       299 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~k~k~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~C~~c~~~~C~p~~  378 (390)
                      .++++++..+||..+.               ++  ++...+++.+++..++...+|++| ..  .-.|+||.|+||+|+.
T Consensus       579 ~s~~~~PYi~Fg~~d~---------------yr--Kr~~ilIs~ivf~~Lla~Lvv~fy-~~--~i~cpWce~ltClP~~  638 (652)
T KOG2290|consen  579 TSIIFLPYIDFGDFDL---------------YR--KRFYILISQIVFSGLLAILVVVFY-NY--PIDCPWCEHLTCLPFT  638 (652)
T ss_pred             HHHHhhccccccchhh---------------hh--hHHHHHHHHHHHHHHHHHHHHhee-ec--ccCCchhhhccccchh
Confidence            9999999998886542               11  223444444444444444344444 33  3489999999999999


Q ss_pred             CCCcCCC
Q 036462          379 WWNCKAQ  385 (390)
Q Consensus       379 ~~~c~~~  385 (390)
                      .-+|..+
T Consensus       639 ~~~~e~~  645 (652)
T KOG2290|consen  639 DCFCEKY  645 (652)
T ss_pred             hhhhhhh
Confidence            9888764

>PRK10907 intramembrane serine protease GlpG; Provisional

Probab=99.95  E-value=1.5e-26  Score=221.69  Aligned_cols=177  Identities=17%  Similarity=0.202  Sum_probs=127.5

Q ss_pred             CCcHHHHHHHHHHHHHHHHHhhcCCCCCCcCcccccccccccccccCCCCCCCCCChhHHHhhcchhhhhhhcCCcchhh
Q 036462           94 FPWMVPGFVVANIVLFVITMYENNCPQTSATGCLGAKFLGRFSFLPLKDNPLLGPSSPALDKMGALTVAKVVTQHQVWRL  173 (390)
Q Consensus        94 ~p~vt~~li~i~v~vfi~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~n~~~gps~~~L~~~Gal~~~~i~~~~q~wRl  173 (390)
                      ..++|..++++|++||++.....+           .                      .+..+... +......+||||+
T Consensus        93 ~~p~T~~li~i~i~vf~l~~~~~~-----------~----------------------~~~~~l~~-~~~~~~~~q~WRl  138 (276)
T PRK10907         93 AGPLTLGVMIACVVVFILMQILGD-----------Q----------------------TVMLWLAW-PFDPSLKFELWRY  138 (276)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHhcc-----------H----------------------HHHHHHhc-cccccccCCcHHH
Confidence            456999999999999998765421           0                      01111111 1122345999999


Q ss_pred             hhhhhccccHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhHHhhcCCcceechHHHHHHHHHHHHHhhhh
Q 036462          174 LTCIWLHGGVFHVLANMLSLLFIGIRLEQEFGFVRIGFLYVLSGFGGSLTSALFIQEGISVGASGALFGLLGAMLSELFT  253 (390)
Q Consensus       174 lTs~FlH~~~~HLl~N~~~l~~~G~~lE~~~G~~r~l~lyl~sgi~g~l~~~l~~~~~~~vGaSgav~Gllg~~~~~~~~  253 (390)
                      +|++|+|.|+.|+++||+.+|.+|..+|+.+|+++++.+|++++++|+++.+++.. ...+|+||+|||++|+.......
T Consensus       139 ~T~~flH~~~~Hl~fNml~l~~lG~~iE~~~G~~~~l~l~l~s~i~~~~~~~~~~~-~~~gGaSGvVygL~g~~~~~~~~  217 (276)
T PRK10907        139 FTHALLHFSLLHILFNLLWWWYLGGAVEKRLGSGKLIVITLISALLSGWVQSKFSG-PWFGGLSGVVYALMGYVWLRGER  217 (276)
T ss_pred             HhHHHHhCCHHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHcc-chhhHHHHHHHHHHHHHHHHhcc
Confidence            99999999999999999999999999999999999999999999999999888754 56889999999999986543221


Q ss_pred             hhHH-hhHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHhh
Q 036462          254 NWTI-YANKLAALLTLIVIISINLAVGILPKVDNFAHIGGFLSGFLLGFVLLI  305 (390)
Q Consensus       254 ~~~~-~~~~~~~~~~l~~~~~~~l~~~~~p~i~~~aHLgG~l~G~l~g~~~~~  305 (390)
                      .... ...+...+..+++++++.+.-.+.++++|.||++|+++|+++|+...+
T Consensus       218 ~p~~~~~lp~~~~~f~llwl~~g~~~~~g~~Ian~AHlgGli~Gll~g~~~~~  270 (276)
T PRK10907        218 DPQSGIYLPRGLIAFALLWLVAGYFDLFGMSIANAAHVAGLAVGLAMAFWDTR  270 (276)
T ss_pred             ccccchhhhHHHHHHHHHHHHHHHHHccCcccHHHHHHHHHHHHHHHHHHhhh
Confidence            1110 111112222233333332222234689999999999999999987653

>COG0705 Membrane associated serine protease [Amino acid transport and metabolism]

Probab=99.91  E-value=9.6e-24  Score=197.85  Aligned_cols=187  Identities=32%  Similarity=0.478  Sum_probs=139.9

Q ss_pred             CCcHHHHHHHHHHHHHHHHHhhcCCCCCCcCcccccccccccccccCCCCCCCCCChhHHHhhcchhhhhhhcCC---cc
Q 036462           94 FPWMVPGFVVANIVLFVITMYENNCPQTSATGCLGAKFLGRFSFLPLKDNPLLGPSSPALDKMGALTVAKVVTQH---QV  170 (390)
Q Consensus        94 ~p~vt~~li~i~v~vfi~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~n~~~gps~~~L~~~Gal~~~~i~~~~---q~  170 (390)
                      .+.++..++++|+++|+...+......            ...               ..+....+..+.......   |+
T Consensus        16 ~~~~~~~~~~~~~~v~~~~~~~~~~~~------------~~~---------------~~~~~~~~~~~~~~~~~~~~~~~   68 (228)
T COG0705          16 APPVTLFLILLNILVFLLELVLGWSAI------------FLL---------------TFLFRLFGLYPLNLLGALARDQL   68 (228)
T ss_pred             cchHHHHHHHHHHHHHHHHHHccchHH------------HHH---------------HHhhhHHhhcchhhhccccccch
Confidence            578999999999999999876542100            000               000011111222222212   89


Q ss_pred             hhhhhhhhccccHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhHHhhcCCc--ceechHHHHHHHHHHHH
Q 036462          171 WRLLTCIWLHGGVFHVLANMLSLLFIGIRLEQEFGFVRIGFLYVLSGFGGSLTSALFIQEG--ISVGASGALFGLLGAML  248 (390)
Q Consensus       171 wRllTs~FlH~~~~HLl~N~~~l~~~G~~lE~~~G~~r~l~lyl~sgi~g~l~~~l~~~~~--~~vGaSgav~Gllg~~~  248 (390)
                      ||++|++|+|.|+.|+++||+.++.+|..+|+.+|+.+++.+|+++|+++++....+.+..  +++||||++||++++++
T Consensus        69 w~lit~~FlH~~~~Hll~N~~~l~~fg~~le~~~G~~~f~~~yl~~gl~~~~~~~~~~~~~~~~~~GASG~i~gllga~~  148 (228)
T COG0705          69 WRLITAIFLHAGFLHLLFNMLALWVFGSNLERRLGTLRFLLFYLLSGLLAGLAQVLFGPKGGAPSLGASGAIFGLLGAYF  148 (228)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHhhHHHHHHhchhHHHHHHHHHHHHHHHHHHHHcccccCcccchhHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999998888765  79999999999999997


Q ss_pred             HhhhhhhHHhh---HHHHHHHHHHHHHHHHHhhccCC---chhHHHHHHHHHHHHHHHHHHhhcc
Q 036462          249 SELFTNWTIYA---NKLAALLTLIVIISINLAVGILP---KVDNFAHIGGFLSGFLLGFVLLIRP  307 (390)
Q Consensus       249 ~~~~~~~~~~~---~~~~~~~~l~~~~~~~l~~~~~p---~i~~~aHLgG~l~G~l~g~~~~~~~  307 (390)
                      ...........   .+......+.+++..+++.+...   ++++.+|++|++.|++++..+.++.
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~va~~aHl~G~i~G~l~~~~~~~~~  213 (228)
T COG0705         149 LLFPFARILLLFLSLPRPALILILIWLLYSLFSGAGSFGPSVAWSAHLGGLIGGLLLAALLSRKL  213 (228)
T ss_pred             HHccccchhhhhccCchhHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            64433322222   33445555666666666665543   7999999999999999998887543

>PF01694 Rhomboid: Rhomboid family; InterPro: IPR022764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.89  E-value=7.4e-24  Score=184.05  Aligned_cols=142  Identities=43%  Similarity=0.691  Sum_probs=108.1

Q ss_pred             cCCcchhhhhhhhccccHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhHHhhcCCc-ceechHHHHHHHH
Q 036462          166 TQHQVWRLLTCIWLHGGVFHVLANMLSLLFIGIRLEQEFGFVRIGFLYVLSGFGGSLTSALFIQEG-ISVGASGALFGLL  244 (390)
Q Consensus       166 ~~~q~wRllTs~FlH~~~~HLl~N~~~l~~~G~~lE~~~G~~r~l~lyl~sgi~g~l~~~l~~~~~-~~vGaSgav~Gll  244 (390)
                      +++||||++|++|+|.|+.|+++|++.++.+|..+|+.+|+++++.+|+++++.++++..++.+.. +.+|+||+++|++
T Consensus         2 ~~~~~wrl~T~~f~h~~~~hl~~n~~~l~~~g~~lE~~~G~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~G~Sg~~~~l~   81 (145)
T PF01694_consen    2 QNGQWWRLFTSPFVHANFLHLLFNLLALWFFGSLLERRLGSRRFLALYLLSGLLGSLLSLLFSPPNQPYVGASGAVFGLL   81 (145)
T ss_dssp             GCC-TTHHHHGGG--SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-S-----SSHHHHHHHH
T ss_pred             CCCcchhhhHHHHHccCHHHHHHHHHHHHHhhhhHhhhccchHHHHHHHHHHHhhhhccccccccccccCCCcccchHHH
Confidence            459999999999999999999999999999999999999999999999999999999999888777 8999999999999


Q ss_pred             HHHHHhhhhhhHHhhHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHhhcc
Q 036462          245 GAMLSELFTNWTIYANKLAALLTLIVIISINLAVGILPKVDNFAHIGGFLSGFLLGFVLLIRP  307 (390)
Q Consensus       245 g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~i~~~aHLgG~l~G~l~g~~~~~~~  307 (390)
                      ++.+.....+++....+..........+.+.+..+..+++++.+|++|+++|++++..+.+++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~hl~G~~~G~~~~~~~~~~~  144 (145)
T PF01694_consen   82 GAFLFLYPQNKKRLRFIYLALVVPIIVLVIILLLGFIPNISFLGHLGGFLAGLLYGFLILRRP  144 (145)
T ss_dssp             HHHHHHHHCCCCCS---HCCCCCCCCCCCHHHCTSSSSTTTHHHHHHHHHHHHHHHHHHCH--
T ss_pred             HHHHHHHhhccchhhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            998776665543332211111112222334455556899999999999999999999998665

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of proteins contain serine peptidases belonging to the MEROPS peptidase family S54 (Rhomboid, clan ST). They are integral membrane proteins related to the Drosophila melanogaster (Fruit fly) rhomboid protein P20350 from SWISSPROT. Members of this family are found in archaea, bacteria and eukaryotes. The D. melanogaster rhomboid protease cleaves type-1 transmembrane domains using a catalytic triad composed of serine, histidine and asparagine contributed by different transmembrane domains. It cleaves the transmembrane proteins Spitz, Gurken and Keren within their transmembrane domains to release a soluble TGFalpha-like growth factor. Cleavage occurs in the Golgi, following translocation of the substrates from the endoplasmic reticulum membrane by Star, another transmembrane protein. The growth factors are then able to activate the epidermal growth factor receptor [, ]. Few substrates of mammalian rhomboid homologues have been determined, but rhomboid-like protein 2 (MEROPS S54.002) has been shown to cleave ephrin B3 []. Parasite-encoded rhomboid enzymes are also important for invasion of host cells by Toxoplasma and the malaria parasite. In Saccharomyces cerevisiae (Baker's yeast) the Pcp1 (MDM37) protein (MEROPS S54.007) is a mitochondrial endopeptidase required for the activation of cytochrome c peroxidase and for the processing of the mitochondrial dynamin-like protein Mgm1 [, ]. Mutations in Pcp1 result in cells have fragmented mitochondria, which have very few short tubulues []. This entry represents the 6 transmembrane helix rhomboid domain.; GO: 0004252 serine-type endopeptidase activity, 0016021 integral to membrane; PDB: 3UBB_A 3B45_A 3B44_A 2NRF_A 3TXT_A 2O7L_A 2XTU_A 2IRV_A 2XOW_A 2XTV_A ....

>KOG2632 consensus Rhomboid family proteins [Function unknown]

Probab=99.65  E-value=1.2e-15  Score=142.38  Aligned_cols=176  Identities=21%  Similarity=0.333  Sum_probs=124.0

Q ss_pred             CcccCCcHHHHHHHHHHHHHHHHHhhcCCCCCCcCcccccccccccccccCCCCCCCCCChhHHHhhcchhhhhhhcCCc
Q 036462           90 FKRHFPWMVPGFVVANIVLFVITMYENNCPQTSATGCLGAKFLGRFSFLPLKDNPLLGPSSPALDKMGALTVAKVVTQHQ  169 (390)
Q Consensus        90 ~~~~~p~vt~~li~i~v~vfi~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~n~~~gps~~~L~~~Gal~~~~i~~~~q  169 (390)
                      .-.+.|.+|.+++.++.++|++.....               +...                      -..+..+..+.|
T Consensus        10 ~~~~~p~~ts~~~~~~~~i~lv~~~~~---------------i~~~----------------------~~l~~~~l~~~q   52 (258)
T KOG2632|consen   10 FWMKIPLLTSIVVVLAILIYLVSFFPG---------------IVEV----------------------LGLPSELLINWQ   52 (258)
T ss_pred             ccccchHHHHHHHHHHHHHHHHhccch---------------hhhH----------------------hcCCHHHhhhHH
Confidence            335568899999999999998765321               0000                      011233455699


Q ss_pred             chhhhhhhhccccHHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHhHHhhcC-----C----cceechHHH
Q 036462          170 VWRLLTCIWLHGGVFHVLANMLSLLFIGIRLEQEFG-FVRIGFLYVLSGFGGSLTSALFIQ-----E----GISVGASGA  239 (390)
Q Consensus       170 ~wRllTs~FlH~~~~HLl~N~~~l~~~G~~lE~~~G-~~r~l~lyl~sgi~g~l~~~l~~~-----~----~~~vGaSga  239 (390)
                      .||++||+++|.+..|+++||+.+|.+|...|+.+| +.+++..+.+-++..+++..+...     +    ...+|.||.
T Consensus        53 l~RL~Ty~l~H~s~~hllfnmlaL~~~g~~fE~~~G~t~~~l~~~~llalf~gIl~ll~~~~~~~~d~~~~~~a~G~s~v  132 (258)
T KOG2632|consen   53 LYRLITYALVHLSLPHLLFNMLALWPLGSQFERTHGTTVRILMFTVLLALFSGILYLLAYHVFLLSDLVYVEGAIGFSGV  132 (258)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHhchhHHHhhccceehHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhcccccccHH
Confidence            999999999999999999999999999999999999 888888777777777777655542     1    246999999


Q ss_pred             HHHHHHHHHHhhhhhhHHhhHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHH
Q 036462          240 LFGLLGAMLSELFTNWTIYANKLAALLTLIVIISINLAVGILPKVDNFAHIGGFLSGFLLGFV  302 (390)
Q Consensus       240 v~Gllg~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~i~~~aHLgG~l~G~l~g~~  302 (390)
                      .|+.++...+.--........-......+..++.+.+..-+.|+.|+.+|++|+++|+.+++.
T Consensus       133 ~Fam~~~~~~~sp~r~~~~fg~~siP~~l~Pw~lLi~~~~lvp~aSFlghl~GllvG~ay~~~  195 (258)
T KOG2632|consen  133 LFAMMAVLEVQSPVRSRSVFGLFSIPIVLAPWALLIATQILVPQASFLGHLCGLLVGYAYAFS  195 (258)
T ss_pred             HHHHHHHHhhcCcccchhhcccccccHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHH
Confidence            999998865432221111111111122333444444444467999999999999999999985

>KOG2980 consensus Integral membrane protease of the rhomboid family involved in different forms of regulated intramembrane proteolysis [Signal transduction mechanisms]

Probab=98.91  E-value=1.5e-09  Score=103.40  Aligned_cols=175  Identities=26%  Similarity=0.341  Sum_probs=119.5

Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCCCcCcccccccccccccccCCCCCCCCCChhHHHhhcchhhhhhhcCCcchhhhhh
Q 036462           97 MVPGFVVANIVLFVITMYENNCPQTSATGCLGAKFLGRFSFLPLKDNPLLGPSSPALDKMGALTVAKVVTQHQVWRLLTC  176 (390)
Q Consensus        97 vt~~li~i~v~vfi~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~n~~~gps~~~L~~~Gal~~~~i~~~~q~wRllTs  176 (390)
                      +++.++++|+++|..|....-           ...+..|..   .+|                     ..+--.|.++++
T Consensus       117 ~v~~ll~~n~~vf~lWrv~~~-----------~~~~~~~ml---s~~---------------------~~~t~~w~i~~s  161 (310)
T KOG2980|consen  117 VVFGLLIANAFVFTLWRVPQK-----------QFTMIPWML---SRN---------------------AYKTGCWKIILS  161 (310)
T ss_pred             chhHHHHHHHHHHHHHHhcch-----------hhhhhhHHh---hcc---------------------cccccceeEEee
Confidence            889999999999999885420           111222210   011                     112335669999


Q ss_pred             hhccccHHHHHHHHHHHHHHHH-HHHHhhhhHHHHHHHHHHHHHHHHhHHhh----cCCcceechHHHHHHHHHHHHHhh
Q 036462          177 IWLHGGVFHVLANMLSLLFIGI-RLEQEFGFVRIGFLYVLSGFGGSLTSALF----IQEGISVGASGALFGLLGAMLSEL  251 (390)
Q Consensus       177 ~FlH~~~~HLl~N~~~l~~~G~-~lE~~~G~~r~l~lyl~sgi~g~l~~~l~----~~~~~~vGaSgav~Gllg~~~~~~  251 (390)
                      .|.|.+.+|+-.||+.++.+.. .+-...|...+..+|+.++..|..+...-    ...++.+||||++|++++.... +
T Consensus       162 ~Fsh~~a~h~g~~~~~~~~y~~~a~~~~~~~~~~~AlylSa~~~~~~i~~~~~v~~~~~gp~LGAsGav~ai~a~~~~-l  240 (310)
T KOG2980|consen  162 TFSHYSALHLGPNMLVLKSYLAGALKGSLGFSSFFALYLSAGVKGLFISVKDKVPTSWAGPSLGASGAVYAILALDCT-L  240 (310)
T ss_pred             hhcchhHhhhcHHHHHHHHHhcccccCCcchhhcccceeccccccceeEeeccccccccccccccchHHHHHHHHHhh-c
Confidence            9999999999999999998888 78888999999999997777776554332    1234789999999999987743 3


Q ss_pred             hhhhHH-----hhHHHHHHHHHHHHHHHHHhhccC--CchhHHHHHHHHHHHHHHHHHHhhcc
Q 036462          252 FTNWTI-----YANKLAALLTLIVIISINLAVGIL--PKVDNFAHIGGFLSGFLLGFVLLIRP  307 (390)
Q Consensus       252 ~~~~~~-----~~~~~~~~~~l~~~~~~~l~~~~~--p~i~~~aHLgG~l~G~l~g~~~~~~~  307 (390)
                      +++...     +..+..+...+-.++..++....+  ..-|+++|++|.+.|++++.....+.
T Consensus       241 fP~~~~~i~f~~~v~~ga~~~~~~i~~~~~a~~~l~~~~~n~~Ah~~gsl~Gv~va~~~~~ri  303 (310)
T KOG2980|consen  241 FPKTTLYILFVFPVPAGAGLAFKAIAAYDFAGLILGWGFFNHAAHLSGSLFGVVVATYLWARI  303 (310)
T ss_pred             CcCcceeEEEeecccccchhHHHHHHHhhhcceeeccccchhHhhhcchHHHHHHHHHHHHHH
Confidence            443322     122222333333344444433333  45788899999999999998887654

>PF08551 DUF1751: Eukaryotic integral membrane protein (DUF1751); InterPro: IPR013861 This entry is found in eukaryotic integral membrane proteins

Probab=98.19  E-value=3.5e-06  Score=69.00  Aligned_cols=59  Identities=20%  Similarity=0.317  Sum_probs=54.3

Q ss_pred             cchhhhhhhhccccHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhHHhh
Q 036462          169 QVWRLLTCIWLHGGVFHVLANMLSLLFIGIRLEQEFGFVRIGFLYVLSGFGGSLTSALF  227 (390)
Q Consensus       169 q~wRllTs~FlH~~~~HLl~N~~~l~~~G~~lE~~~G~~r~l~lyl~sgi~g~l~~~l~  227 (390)
                      ..|+++|+.|++.++..+++|.+.++..|+.+|+.+|++.++...++.++..+++..+.
T Consensus         7 ~pWtl~T~~fve~~i~~~l~~~~~l~~~g~~lE~~WGs~E~lkFi~vv~~~tnl~~~~~   65 (99)
T PF08551_consen    7 YPWTLFTAGFVETNIIGLLFSLLTLFYGGRYLEPIWGSREFLKFILVVNVITNLLTFLL   65 (99)
T ss_pred             ehHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHhcChHHHHHHHHHHHHHhHHHHHHH
Confidence            68999999999999999999999999999999999999999998888888888776543

Q12239 from SWISSPROT, a Saccharomyces cerevisiae (Baker's yeast) protein, has been shown to localise COP II vesicles [].

>PF04511 DER1: Der1-like family; InterPro: IPR007599 The endoplasmic reticulum (ER) of the yeast Saccharomyces cerevisiae (Baker's yeast) contains a proteolytic system able to selectively degrade misfolded lumenal secretory proteins

Probab=97.82  E-value=8.7e-05  Score=68.26  Aligned_cols=69  Identities=20%  Similarity=0.272  Sum_probs=51.4

Q ss_pred             hhhhhhhcCCcchhhhhhhhccccH-HHHHHHHHHHHHHHHHHHHhh-h-h-HHHHHHHHHHHHHHHHhHHhh
Q 036462          159 LTVAKVVTQHQVWRLLTCIWLHGGV-FHVLANMLSLLFIGIRLEQEF-G-F-VRIGFLYVLSGFGGSLTSALF  227 (390)
Q Consensus       159 l~~~~i~~~~q~wRllTs~FlH~~~-~HLl~N~~~l~~~G~~lE~~~-G-~-~r~l~lyl~sgi~g~l~~~l~  227 (390)
                      ++++.+.++.|+||++|+.|.-++. .++++|++.++..+..+|+.. . + ..++...+.+++.-.+++.+.
T Consensus        31 ~~~~~v~~~~q~WRl~Tsff~~g~~~~~~l~~~~~l~~~s~~LE~~~f~~~~ady~~~ll~~~~~i~~~~~~~  103 (197)
T PF04511_consen   31 FDWELVFKKFQIWRLFTSFFYFGPFSLNFLFNLYFLYQYSSSLEEGHFQGRSADYLWFLLFGASLILILSLLI  103 (197)
T ss_pred             ECcHHHhhhcCceeeEEEEEEEcCCCHHHHHHHHHHHHHhhHhccCCCCCCHHHHHHHHHHHHHHHHHHHHhh
Confidence            3456777789999999999986554 799999999999999999983 2 2 456666555555555555433

For examination of the components involved in this degradation process, mutants were isolated. They could be divided into four complementation groups. The mutations led to stabilisation of two different substrates for this process, and the classes were called der for degradation in the ER. DER1 was cloned by complementation of the der1-2 mutation. The DER1 gene codes for a novel, hydrophobic protein that is localized to the ER. Deletion of DER1 abolished degradation of the substrate proteins, suggesting that the function of the Der1 protein may be specifically required for the degradation process associated with the ER []. Interestingly this family seems distantly related to the Rhomboid family of membrane peptidases. This family may also mediate degradation of misfolded proteins.

>KOG0858 consensus Predicted membrane protein [Function unknown]

Probab=97.63  E-value=0.00094  Score=62.31  Aligned_cols=99  Identities=20%  Similarity=0.253  Sum_probs=72.8

Q ss_pred             ccCCcHHHHHHHHHHHHHHHHHhhcCCCCCCcCcccccccccccccccCCCCCCCCCChhHHHhhcchhhhhhhcCCcch
Q 036462           92 RHFPWMVPGFVVANIVLFVITMYENNCPQTSATGCLGAKFLGRFSFLPLKDNPLLGPSSPALDKMGALTVAKVVTQHQVW  171 (390)
Q Consensus        92 ~~~p~vt~~li~i~v~vfi~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~n~~~gps~~~L~~~Gal~~~~i~~~~q~w  171 (390)
                      ...|++|-....+++++=++....-                    +.|.               +--++++.+.++.|+|
T Consensus        10 ~~iPpVTR~~~~~~v~tt~~~~l~l--------------------IsP~---------------~l~~~p~Lv~kk~QiW   54 (239)
T KOG0858|consen   10 LQIPPVTRYYTTACVVTTLLVRLDL--------------------ISPF---------------QLYLNPELVFKKFQIW   54 (239)
T ss_pred             hcCChHHHHHHHHHHHHHHHHhhcc--------------------cCch---------------heEecHHHHHhHhHHH
Confidence            3468899988888887777665321                    1111               1134667889999999


Q ss_pred             hhhhhhhcccc-HHHHHHHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHhHH
Q 036462          172 RLLTCIWLHGG-VFHVLANMLSLLFIGIRLEQEF---GFVRIGFLYVLSGFGGSLTSA  225 (390)
Q Consensus       172 RllTs~FlH~~-~~HLl~N~~~l~~~G~~lE~~~---G~~r~l~lyl~sgi~g~l~~~  225 (390)
                      |++|+.+.-.. -+|.++||+.++--++.+|+-.   -+..|+.+.+.+++.-.+.+.
T Consensus        55 RliTs~lyfg~~gf~fl~n~~FlyrY~~~LE~g~f~~rtadf~~mllf~~~l~~~~~~  112 (239)
T KOG0858|consen   55 RLITSFLYFGPFGFDFLMNLYFLYRYSSMLEEGSFRGRTADFLYMLLFGAVLLTLTGL  112 (239)
T ss_pred             HhhhhhheeccccHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHH
Confidence            99999998865 6999999999999999999754   236777777777776554443

>KOG2890 consensus Predicted membrane protein [Function unknown]

Probab=97.08  E-value=0.00044  Score=66.38  Aligned_cols=132  Identities=22%  Similarity=0.282  Sum_probs=88.3

Q ss_pred             cchhhhhhhhccccHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhHH--------hhcC----Ccceech
Q 036462          169 QVWRLLTCIWLHGGVFHVLANMLSLLFIGIRLEQEFGFVRIGFLYVLSGFGGSLTSA--------LFIQ----EGISVGA  236 (390)
Q Consensus       169 q~wRllTs~FlH~~~~HLl~N~~~l~~~G~~lE~~~G~~r~l~lyl~sgi~g~l~~~--------l~~~----~~~~vGa  236 (390)
                      ..|+++|+.|+-.+.+-.++|++.+.+-|..+|+.+|+..++..|.+.-..-+++..        ++..    +.+-.|.
T Consensus        66 ~~WtliTs~fie~~vw~V~~sv~~L~v~G~~lEp~Wg~~e~lkff~ivn~~~~l~v~v~~~l~Y~it~n~v~L~~~i~G~  145 (326)
T KOG2890|consen   66 FPWTLITSGFIELNVWDVLVSVLTLSVGGKFLEPNWGSLELLKFFAIVNGSTTLVVLVPALLLYMITDNHVYLYIPIHGT  145 (326)
T ss_pred             hhHHHHhcchhhhhHHHHHHHHHheeecceeeccCCCCHHHHHHHHHhhchhHHHHHHHHHHHHHHhcCceEEEEEeccc
Confidence            689999999999999999999999999999999999999998877654443333221        2211    1267899


Q ss_pred             HHHHHHHHHHHHHhhhhhhHHhhHHHHHH-------HHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHhhc
Q 036462          237 SGALFGLLGAMLSELFTNWTIYANKLAAL-------LTLIVIISINLAVGILPKVDNFAHIGGFLSGFLLGFVLLIR  306 (390)
Q Consensus       237 Sgav~Gllg~~~~~~~~~~~~~~~~~~~~-------~~l~~~~~~~l~~~~~p~i~~~aHLgG~l~G~l~g~~~~~~  306 (390)
                      .|.+-|++.++ -.+++......-+...+       ..++..+++.+     -....++.+.-+.+|.+.++.+++.
T Consensus       146 ~gilaGilVa~-kQllpd~~il~~~~~r~~~~~lP~~~l~~~~il~i-----~~f~~f~~l~s~~~g~~~sWtYLRf  216 (326)
T KOG2890|consen  146 TGILAGILVAW-KQLLPDTIILELKSGRFLYAHLPLLVLFLSLILSI-----ITFLVFASLPSITFGVLVSWTYLRF  216 (326)
T ss_pred             hHHHHHHHHHH-HHHcCceeEEeccchhhhhhhCCHHHHHHHHHHHH-----HHHHHhhhhHHHHHhhhhhhhhhee
Confidence            99999999665 23333221111111111       11111111111     2346678888899999999999864

>KOG4463 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.65  E-value=0.0084  Score=56.62  Aligned_cols=61  Identities=20%  Similarity=0.330  Sum_probs=51.5

Q ss_pred             cCCcchhhhhhhhccccHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhHHhh
Q 036462          166 TQHQVWRLLTCIWLHGGVFHVLANMLSLLFIGIRLEQEFGFVRIGFLYVLSGFGGSLTSALF  227 (390)
Q Consensus       166 ~~~q~wRllTs~FlH~~~~HLl~N~~~l~~~G~~lE~~~G~~r~l~lyl~sgi~g~l~~~l~  227 (390)
                      ...|+||++.+.|...+--.+++-++.++.+ +.+||.+|+.||..+-+.+++.+.++..++
T Consensus        47 ~y~qywrlL~~qF~~~n~~e~~~~l~I~Y~f-R~~ERlLGShky~~fiv~s~~~~~l~~~il  107 (323)
T KOG4463|consen   47 KYFQYWRLLMSQFAFSNTPELMFGLYILYYF-RVFERLLGSHKYSVFIVFSGTVSLLLEVIL  107 (323)
T ss_pred             HHHHHHHHHHHHHHhcCChHHHHHHHHHHHH-HHHHHHhccccceeehhHHHHHHHHHHHHH
Confidence            3489999999999999988888877666554 889999999999998888888887776554

>KOG2290 consensus Rhomboid family proteins [Signal transduction mechanisms]

Probab=93.26  E-value=0.12  Score=52.42  Aligned_cols=85  Identities=19%  Similarity=0.305  Sum_probs=56.5

Q ss_pred             ccCCcHHHHHHHHHHHHHHHHHhhcCCCC-C-CcCccccccccccccccc----CCCCCCCCCChhHHHhhcchhhhhhh
Q 036462           92 RHFPWMVPGFVVANIVLFVITMYENNCPQ-T-SATGCLGAKFLGRFSFLP----LKDNPLLGPSSPALDKMGALTVAKVV  165 (390)
Q Consensus        92 ~~~p~vt~~li~i~v~vfi~~~~~~~~~~-~-~~g~~~~~~~~~~~~~~p----~~~n~~~gps~~~L~~~Gal~~~~i~  165 (390)
                      ...||+|+.+..+++.|-++.+...+..+ . +..+..+.-+-+.+..+.    -++|+++||+.+.|.++||++.+-+.
T Consensus       197 d~RP~FTyWlt~Vh~~V~iLsl~~YG~aP~gf~~~et~~~Vl~n~~v~e~VkYlqQeN~WiGP~~~dLI~LGA~fSPCmr  276 (652)
T KOG2290|consen  197 DHRPWFTYWLTFVHSFVTILSLCIYGIAPVGFSQHETVGDVLDNTLVYERVKYLQQENFWIGPSSADLIHLGAKFSPCMR  276 (652)
T ss_pred             CCCchhHHHHHHHHHHHHHHHHHHhcCCcccchhhHhHHHHHhhhhhhhhhHHHHhcCCccCccHHHHHHhccccChhhh
Confidence            45689999999888888777655433221 1 111111010111111111    36899999999999999999999999


Q ss_pred             cCCcchhhhhh
Q 036462          166 TQHQVWRLLTC  176 (390)
Q Consensus       166 ~~~q~wRllTs  176 (390)
                      ++.|.|..+-.
T Consensus       277 rd~q~~~~I~~  287 (652)
T KOG2290|consen  277 RDPQVWSAIEE  287 (652)
T ss_pred             cChHHHHHHHH
Confidence            99999988754

>COG5291 Predicted membrane protein [Function unknown]

Probab=93.21  E-value=0.4  Score=45.15  Aligned_cols=47  Identities=21%  Similarity=0.371  Sum_probs=37.3

Q ss_pred             hhhhhcCCcchhhhhhhhcccc-HHHHHHHHHHHHHHHHHHHHh-hhhH
Q 036462          161 VAKVVTQHQVWRLLTCIWLHGG-VFHVLANMLSLLFIGIRLEQE-FGFV  207 (390)
Q Consensus       161 ~~~i~~~~q~wRllTs~FlH~~-~~HLl~N~~~l~~~G~~lE~~-~G~~  207 (390)
                      .+...++.||||++|+...-++ -+..++|++.++--.+++|+- +|+.
T Consensus        51 ~pL~~k~~qiwRlfTs~~~~~~~~~d~~M~vyf~Y~yS~~LE~g~f~~~   99 (313)
T COG5291          51 SPLFLKRLQIWRLFTSFLYFGKPTLDMFMHVYFLYRYSRMLEEGCFNTS   99 (313)
T ss_pred             chhHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHhccccCcc
Confidence            3455667999999998766654 578999999999999999974 4443

>PF11992 DUF3488: Domain of unknown function (DUF3488); InterPro: IPR021878 This presumed domain is functionally uncharacterised

Probab=81.54  E-value=58  Score=32.18  Aligned_cols=26  Identities=23%  Similarity=0.052  Sum_probs=18.9

Q ss_pred             cCCchhHHHHHHHHHHHHHHHHHHhh
Q 036462          280 ILPKVDNFAHIGGFLSGFLLGFVLLI  305 (390)
Q Consensus       280 ~~p~i~~~aHLgG~l~G~l~g~~~~~  305 (390)
                      +..++-...++...+...+++++.+.
T Consensus       119 ~~qs~~~~l~~ll~~~~~~~~L~~l~  144 (325)
T PF11992_consen  119 FSQSLLFALYLLLFLVLLLAALVLLH  144 (325)
T ss_pred             HhccHHHHHHHHHHHHHHHHHHHHHh
Confidence            44567777788888888777777763

This domain is found in bacteria. This domain is typically between 323 to 339 amino acids in length. This domain is found associated with PF01841 from PFAM. This domain has a conserved PLW sequence motif. This domain contains 6 transmembrane helices.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	390
2nr9_A	196	Protein GLPG homolog; intramembrane peptidase, rho	5e-44
2xov_A	181	Rhomboid protease GLPG; membrane protein, hydrolas	1e-36

>2nr9_A Protein GLPG homolog; intramembrane peptidase, rhomboid protease, membrane protein; HET: PA6 PQE; 2.20A {Haemophilus influenzae} SCOP: f.51.1.1 PDB: 3odj_A Length = 196

 Score =  150 bits (381), Expect = 5e-44
 Identities = 35/223 (15%), Positives = 71/223 (31%), Gaps = 36/223 (16%)

Query: 87  LSPFKRHFPWMVPGFVVANIVLFVITMYENNCPQTSATGCLGAKFLGRFSFLPLKDNPLL 146
           +  F      +        +++++                     +      P       
Sbjct: 1   MENFLAQQGKITLILTALCVLIYIAQQL------------GFEDDIMYLMHYP------- 41

Query: 147 GPSSPALDKMGALTVAKVVTQHQVWRLLTCIWLHGGVFHVLANMLSLLFIGIRLEQEFGF 206
                          A      +VWR ++   +H    H+L N+      G  +E+ FG 
Sbjct: 42  ---------------AYEEQDSEVWRYISHTLVHLSNLHILFNLSWFFIFGGMIERTFGS 86

Query: 207 VRIGFLYVLSGFGGSLTSALFIQEGISVGASGALFGLLGAMLSELFTNWTIYANKLAALL 266
           V++  LYV++                  G SG ++ +LG +      N  ++        
Sbjct: 87  VKLLMLYVVASAITGYVQNYV-SGPAFFGLSGVVYAVLGYVFIRDKLNHHLFDLPEGFFT 145

Query: 267 TLIVIISINLAVGIL-PKVDNFAHIGGFLSGFLLGFVLLIRPQ 308
            L+V I++     +   ++ N AHI G + G + GF+     +
Sbjct: 146 MLLVGIALGFISPLFGVEMGNAAHISGLIVGLIWGFIDSKLRK 188

>2xov_A Rhomboid protease GLPG; membrane protein, hydrolase, intramembrane protease; HET: BNG; 1.65A {Escherichia coli} PDB: 2ic8_A* 2nrf_A 2xtu_A* 2irv_A* 3b45_A* 2o7l_A* 2xow_A* 3txt_A* 2xtv_A* 3b44_A* Length = 181

 Score =  130 bits (329), Expect = 1e-36
 Identities = 28/160 (17%), Positives = 57/160 (35%), Gaps = 4/160 (2%)

Query: 145 LLGPSSPALDKMGALTVAKVVTQHQVWRLLTCIWLHGGVFHVLANMLSLLFIGIRLEQEF 204
            +      +  +          + + WR  T   +H  + H+L N+L   ++G  +E+  
Sbjct: 22  QILGDQEVMLWLAW--PFDPTLKFEFWRYFTHALMHFSLMHILFNLLWWWYLGGAVEKRL 79

Query: 205 GFVRIGFLYVLSGFGGSLTSALFIQEGISVGASGALFGLLGAMLSELFTNWTIYANKLAA 264
           G  ++  + ++S          F       G SG ++ L+G +      +          
Sbjct: 80  GSGKLIVITLISALLSGYVQQKF-SGPWFGGLSGVVYALMGYVWLRGERDPQSGIYLQRG 138

Query: 265 LLTLIVIISINLAVGIL-PKVDNFAHIGGFLSGFLLGFVL 303
           L+   +I  +     +    + N AHI G   G  + FV 
Sbjct: 139 LIIFALIWIVAGWFDLFGMSMANGAHIAGLAVGLAMAFVD 178

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	390
2xov_A	181	Rhomboid protease GLPG; membrane protein, hydrolas	99.96
2nr9_A	196	Protein GLPG homolog; intramembrane peptidase, rho	99.96

>2xov_A Rhomboid protease GLPG; membrane protein, hydrolase, intramembrane protease; HET: BNG; 1.65A {Escherichia coli} PDB: 2ic8_A* 2nrf_A 2xtu_A* 2irv_A* 3b45_A* 2o7l_A* 2xow_A* 3txt_A* 2xtv_A* 3b44_A*

Probab=99.96  E-value=9e-29  Score=222.99  Aligned_cols=177  Identities=18%  Similarity=0.208  Sum_probs=130.5

Q ss_pred             CCcHHHHHHHHHHHHHHHHHhhcCCCCCCcCcccccccccccccccCCCCCCCCCChhHHHhhcchhhhhhhcCCcchhh
Q 036462           94 FPWMVPGFVVANIVLFVITMYENNCPQTSATGCLGAKFLGRFSFLPLKDNPLLGPSSPALDKMGALTVAKVVTQHQVWRL  173 (390)
Q Consensus        94 ~p~vt~~li~i~v~vfi~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~n~~~gps~~~L~~~Gal~~~~i~~~~q~wRl  173 (390)
                      .+++|..++++|+++|+++....+           ......+                      +++++ ...++||||+
T Consensus         3 ~~pvt~~li~~~v~vf~~~~~~~~-----------~~~~~~~----------------------~~~p~-~~~~~~~wrl   48 (181)
T 2xov_A            3 AGPVTWVMMIACVVVFIAMQILGD-----------QEVMLWL----------------------AWPFD-PTLKFEFWRY   48 (181)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHCH-----------HHHHHHH----------------------SSCCS-GGGTTCTTHH
T ss_pred             CCcHHHHHHHHHHHHHHHHHHhCc-----------HHHHHhh----------------------cCChh-hccCCCCHHH
Confidence            467999999999999998875421           1112222                      22222 2345999999


Q ss_pred             hhhhhccccHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhHHhhcCCcceechHHHHHHHHHHHHHhhhh
Q 036462          174 LTCIWLHGGVFHVLANMLSLLFIGIRLEQEFGFVRIGFLYVLSGFGGSLTSALFIQEGISVGASGALFGLLGAMLSELFT  253 (390)
Q Consensus       174 lTs~FlH~~~~HLl~N~~~l~~~G~~lE~~~G~~r~l~lyl~sgi~g~l~~~l~~~~~~~vGaSgav~Gllg~~~~~~~~  253 (390)
                      +|++|+|.|+.|+++||+.++.+|..+|+.+|++|++.+|+++++.|+++++++.+.. ++||||++||++++.++.-..
T Consensus        49 ~T~~f~H~~~~Hl~~Nm~~l~~~g~~~E~~~G~~~fl~~yl~~~i~~~l~~~~~~~~~-~vGaSGai~gl~g~~~~~~~~  127 (181)
T 2xov_A           49 FTHALMHFSLMHILFNLLWWWYLGGAVEKRLGSGKLIVITLISALLSGYVQQKFSGPW-FGGLSGVVYALMGYVWLRGER  127 (181)
T ss_dssp             HHGGGCCCSHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCSC-CCCSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHccCHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcCCC-ceeHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999999999999999999999998887654 899999999999987542211


Q ss_pred             hhHHh-hHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHhh
Q 036462          254 NWTIY-ANKLAALLTLIVIISINLAVGILPKVDNFAHIGGFLSGFLLGFVLLI  305 (390)
Q Consensus       254 ~~~~~-~~~~~~~~~l~~~~~~~l~~~~~p~i~~~aHLgG~l~G~l~g~~~~~  305 (390)
                      +.+.. ..+.........+++..+...+.+++|+.||++|+++|+++++.+.+
T Consensus       128 ~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~aHlgG~l~G~l~~~~~~~  180 (181)
T 2xov_A          128 DPQSGIYLQRGLIIFALIWIVAGWFDLFGMSMANGAHIAGLAVGLAMAFVDSL  180 (181)
T ss_dssp             CGGGSCCCCHHHHHHHHHHHHHHHTTSSCCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcCceeeeHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHhc
Confidence            11110 01122222233333333332234689999999999999999987753

>2nr9_A Protein GLPG homolog; intramembrane peptidase, rhomboid protease, membrane protein; HET: PA6 PQE; 2.20A {Haemophilus influenzae} SCOP: f.51.1.1 PDB: 3odj_A

Probab=99.96  E-value=1.7e-29  Score=230.54  Aligned_cols=181  Identities=18%  Similarity=0.275  Sum_probs=131.0

Q ss_pred             ccCCcHHHHHHHHHHHHHHHHHhhcCCCCCCcCcccccccccccccccCCCCCCCCCChhHHHhhcchhhhhhhcCCcch
Q 036462           92 RHFPWMVPGFVVANIVLFVITMYENNCPQTSATGCLGAKFLGRFSFLPLKDNPLLGPSSPALDKMGALTVAKVVTQHQVW  171 (390)
Q Consensus        92 ~~~p~vt~~li~i~v~vfi~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~n~~~gps~~~L~~~Gal~~~~i~~~~q~w  171 (390)
                      .+.+++|..++++|+++|+++....+                                 +.+.++.++.++.+ .++|||
T Consensus         6 ~~~~pvt~~li~~~v~vfll~~~~~~---------------------------------~~~~~~~~~~p~~~-~~~~~w   51 (196)
T 2nr9_A            6 AQQGKITLILTALCVLIYIAQQLGFE---------------------------------DDIMYLMHYPAYEE-QDSEVW   51 (196)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHHHTTCH---------------------------------HHHHHHHSCCCSGG-GGGCTT
T ss_pred             cccccHHHHHHHHHHHHHHHHHHcCc---------------------------------HHHHHhhcCCHhhc-ccCCcH
Confidence            34477999999999999998764310                                 11222223333333 458999


Q ss_pred             hhhhhhhccccHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhHHhhcCCcceechHHHHHHHHHHHHHhh
Q 036462          172 RLLTCIWLHGGVFHVLANMLSLLFIGIRLEQEFGFVRIGFLYVLSGFGGSLTSALFIQEGISVGASGALFGLLGAMLSEL  251 (390)
Q Consensus       172 RllTs~FlH~~~~HLl~N~~~l~~~G~~lE~~~G~~r~l~lyl~sgi~g~l~~~l~~~~~~~vGaSgav~Gllg~~~~~~  251 (390)
                      |++|++|+|.|+.|+++||+.++.+|..+|+.+|++|++.+|+++++.|+++++++.+.. ++||||++||++++.+..-
T Consensus        52 rl~T~~flH~~~~Hl~~Nm~~l~~~G~~lE~~~G~~~~l~~yl~~~~~~~l~~~~~~~~~-~vGaSGai~gl~g~~~~~~  130 (196)
T 2nr9_A           52 RYISHTLVHLSNLHILFNLSWFFIFGGMIERTFGSVKLLMLYVVASAITGYVQNYVSGPA-FFGLSGVVYAVLGYVFIRD  130 (196)
T ss_dssp             HHHHGGGCCSSHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCSC-CCCSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHhcCCC-eeeHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999887654 8999999999999875422


Q ss_pred             hhhhHHhhHHHHHHHHHHHHHHHHHhhc-cCCchhHHHHHHHHHHHHHHHHHHhhcc
Q 036462          252 FTNWTIYANKLAALLTLIVIISINLAVG-ILPKVDNFAHIGGFLSGFLLGFVLLIRP  307 (390)
Q Consensus       252 ~~~~~~~~~~~~~~~~l~~~~~~~l~~~-~~p~i~~~aHLgG~l~G~l~g~~~~~~~  307 (390)
                      ..+.+....+......+.+++++.+... ..+++|+.||+||+++|+++++.+.+++
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~aHlgG~l~G~l~~~~~~~~~  187 (196)
T 2nr9_A          131 KLNHHLFDLPEGFFTMLLVGIALGFISPLFGVEMGNAAHISGLIVGLIWGFIDSKLR  187 (196)
T ss_dssp             HSSTTSCCCCCSSTTTTTTTTTHHHHSCSSCCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhcchhhcchHHHHHHHHHHHHHHHHHhccCCCccHHHHHHHHHHHHHHHHHHHhcc
Confidence            1111110011111111111122222211 2358999999999999999999887554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	390
d3b45a1	180	f.51.1.1 (A:91-270) GlpG {Escherichia coli [TaxId:	5e-20
d2nr9a1	189	f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilu	2e-18

>d3b45a1 f.51.1.1 (A:91-270) GlpG {Escherichia coli [TaxId: 562]} Length = 180

class: Membrane and cell surface proteins and peptides
fold: Rhomboid-like
superfamily: Rhomboid-like
family: Rhomboid-like
domain: GlpG
species: Escherichia coli [TaxId: 562]

 Score = 84.8 bits (209), Expect = 5e-20
 Identities = 28/140 (20%), Positives = 54/140 (38%), Gaps = 2/140 (1%)

Query: 164 VVTQHQVWRLLTCIWLHGGVFHVLANMLSLLFIGIRLEQEFGFVRIGFLYVLSGFGGSLT 223
              + + WR  T   +H  + H+L N+L   ++G  +E+  G  ++  + ++S       
Sbjct: 39  PTLKFEFWRYFTHALMHFSLMHILFNLLWWWYLGGAVEKRLGSGKLIVITLISALLSGYV 98

Query: 224 SALFIQEGISVGASGALFGLLGAMLSELFTNWTIYANKLAALLTLIVIISINLAVGIL-P 282
              F       G SG ++ L+G +      +          L+   +I  +     +   
Sbjct: 99  QQKF-SGPWFGGLSGVVYALMGYVWLRGERDPQSGIYLQRGLIIFALIWIVAGWFDLFGM 157

Query: 283 KVDNFAHIGGFLSGFLLGFV 302
            + N AHI G   G  + FV
Sbjct: 158 SMANGAHIAGLAVGLAMAFV 177

>d2nr9a1 f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilus influenzae [TaxId: 727]} Length = 189

class: Membrane and cell surface proteins and peptides
fold: Rhomboid-like
superfamily: Rhomboid-like
family: Rhomboid-like
domain: GlpG homolog HI0618
species: Haemophilus influenzae [TaxId: 727]

 Score = 80.6 bits (198), Expect = 2e-18
 Identities = 33/148 (22%), Positives = 63/148 (42%), Gaps = 2/148 (1%)

Query: 162 AKVVTQHQVWRLLTCIWLHGGVFHVLANMLSLLFIGIRLEQEFGFVRIGFLYVLSGFGGS 221
           A      +VWR ++   +H    H+L N+      G  +E+ FG V++  LYV++     
Sbjct: 39  AYEEQDSEVWRYISHTLVHLSNLHILFNLSWFFIFGGMIERTFGSVKLLMLYVVASAITG 98

Query: 222 LTSALFIQEGISVGASGALFGLLGAMLSELFTNWTIYANKLAALLTLIVIISINLAVGIL 281
                ++      G SG ++ +LG +      N  ++         L+V I++     + 
Sbjct: 99  YVQ-NYVSGPAFFGLSGVVYAVLGYVFIRDKLNHHLFDLPEGFFTMLLVGIALGFISPLF 157

Query: 282 -PKVDNFAHIGGFLSGFLLGFVLLIRPQ 308
             ++ N AHI G + G + GF+     +
Sbjct: 158 GVEMGNAAHISGLIVGLIWGFIDSKLRK 185

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	390
d3b45a1	180	GlpG {Escherichia coli [TaxId: 562]}	99.95
d2nr9a1	189	GlpG homolog HI0618 {Haemophilus influenzae [TaxId	99.94

>d3b45a1 f.51.1.1 (A:91-270) GlpG {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: Rhomboid-like
superfamily: Rhomboid-like
family: Rhomboid-like
domain: GlpG
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=1e-26  Score=206.88  Aligned_cols=176  Identities=18%  Similarity=0.197  Sum_probs=132.5

Q ss_pred             cCCcHHHHHHHHHHHHHHHHHhhcCCCCCCcCcccccccccccccccCCCCCCCCCChhHHHhhcchhhhhhhcCCcchh
Q 036462           93 HFPWMVPGFVVANIVLFVITMYENNCPQTSATGCLGAKFLGRFSFLPLKDNPLLGPSSPALDKMGALTVAKVVTQHQVWR  172 (390)
Q Consensus        93 ~~p~vt~~li~i~v~vfi~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~n~~~gps~~~L~~~Gal~~~~i~~~~q~wR  172 (390)
                      |.+++|..++++|+++|++.....+                                 +...++.....+ ...++||||
T Consensus         2 r~~pvT~~li~i~~~vf~~~~~~~~---------------------------------~~~~~~~~~~~~-~~~~g~~wr   47 (180)
T d3b45a1           2 RAGPVTWVMMIACVVVFIAMQILGD---------------------------------QEVMLWLAWPFD-PTLKFEFWR   47 (180)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHCH---------------------------------HHHHHHHSSCCS-GGGTTCGGG
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHhCc---------------------------------HHHHHHHcCCCc-ccccCchHH
Confidence            4578999999999999998765421                                 122233333323 334599999


Q ss_pred             hhhhhhccccHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhHHhhcCCcceechHHHHHHHHHHHHHhhh
Q 036462          173 LLTCIWLHGGVFHVLANMLSLLFIGIRLEQEFGFVRIGFLYVLSGFGGSLTSALFIQEGISVGASGALFGLLGAMLSELF  252 (390)
Q Consensus       173 llTs~FlH~~~~HLl~N~~~l~~~G~~lE~~~G~~r~l~lyl~sgi~g~l~~~l~~~~~~~vGaSgav~Gllg~~~~~~~  252 (390)
                      ++|++|+|.|+.|+++||+.++.+|+.+|+.+|++|++.+|+++++.|+++..++.+ ....|+||+++|++++......
T Consensus        48 l~T~~f~H~~~~Hl~~N~~~l~~~G~~lE~~~G~~~~~~~~~~~~~~g~l~~~~~~~-~~~~G~sg~i~~l~~~~~~~~~  126 (180)
T d3b45a1          48 YFTHALMHFSLMHILFNLLWWWYLGGAVEKRLGSGKLIVITLISALLSGYVQQKFSG-PWFGGLSGVVYALMGYVWLRGE  126 (180)
T ss_dssp             GTGGGGCCCSHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHC-SCCCCSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhccchhheeeeeHHHHHHHHHHHHHhc-cccccccchHHHHHHHHHHHhh
Confidence            999999999999999999999999999999999999999999999999999988865 4689999999999998876443


Q ss_pred             hhhHHhh-HHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHH
Q 036462          253 TNWTIYA-NKLAALLTLIVIISINLAVGILPKVDNFAHIGGFLSGFLLGFVL  303 (390)
Q Consensus       253 ~~~~~~~-~~~~~~~~l~~~~~~~l~~~~~p~i~~~aHLgG~l~G~l~g~~~  303 (390)
                      .+..... .+....................+++|+.||++|+++|+++|++.
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~aHlgG~l~G~~~~~~~  178 (180)
T d3b45a1         127 RDPQSGIYLQRGLIIFALIWIVAGWFDLFGMSMANGAHIAGLAVGLAMAFVD  178 (180)
T ss_dssp             HCGGGSCCCCHHHHHHHHHHHHHHHTTSSCCSSCHHHHHHHHHHHHHHHHHH
T ss_pred             hcchhHHhhHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHH
Confidence            3332211 11112222222233333334568899999999999999999865

>d2nr9a1 f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilus influenzae [TaxId: 727]}

class: Membrane and cell surface proteins and peptides
fold: Rhomboid-like
superfamily: Rhomboid-like
family: Rhomboid-like
domain: GlpG homolog HI0618
species: Haemophilus influenzae [TaxId: 727]

Probab=99.94  E-value=1.6e-27  Score=213.91  Aligned_cols=178  Identities=19%  Similarity=0.274  Sum_probs=132.9

Q ss_pred             cCCcHHHHHHHHHHHHHHHHHhhcCCCCCCcCcccccccccccccccCCCCCCCCCChhHHHhhcchhhhhhhcCCcchh
Q 036462           93 HFPWMVPGFVVANIVLFVITMYENNCPQTSATGCLGAKFLGRFSFLPLKDNPLLGPSSPALDKMGALTVAKVVTQHQVWR  172 (390)
Q Consensus        93 ~~p~vt~~li~i~v~vfi~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~n~~~gps~~~L~~~Gal~~~~i~~~~q~wR  172 (390)
                      +.+++|.+++++|+++|+++....+                                 +.+..+.. .+.....++||||
T Consensus         4 ~~~pvt~~i~~~~~~v~~~~~~~~~---------------------------------~~~~~~~~-~~~~~~~~~~~wr   49 (189)
T d2nr9a1           4 QQGKITLILTALCVLIYIAQQLGFE---------------------------------DDIMYLMH-YPAYEEQDSEVWR   49 (189)
T ss_dssp             TSCHHHHHHHHHHHHHHHHHHTTCH---------------------------------HHHHHHHS-CCCSGGGGGCTTH
T ss_pred             CcchHHHHHHHHHHHHHHHHHHhcc---------------------------------HHHHHHHH-ccccccccCchHH
Confidence            3467999999999999998764311                                 11112211 2223445699999


Q ss_pred             hhhhhhccccHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhHHhhcCCcceechHHHHHHHHHHHHHhhh
Q 036462          173 LLTCIWLHGGVFHVLANMLSLLFIGIRLEQEFGFVRIGFLYVLSGFGGSLTSALFIQEGISVGASGALFGLLGAMLSELF  252 (390)
Q Consensus       173 llTs~FlH~~~~HLl~N~~~l~~~G~~lE~~~G~~r~l~lyl~sgi~g~l~~~l~~~~~~~vGaSgav~Gllg~~~~~~~  252 (390)
                      ++|+.|+|.|+.|+++||+.++.+|..+|+.+|+++++.+|+++++.|+++..++.+ ...+|+||++||++++......
T Consensus        50 l~T~~f~H~~~~Hl~~N~~~l~~~g~~~E~~~G~~~~~~~~~~~~~~~~l~~~~~~~-~~~vGaSG~v~gl~~~~~~~~~  128 (189)
T d2nr9a1          50 YISHTLVHLSNLHILFNLSWFFIFGGMIERTFGSVKLLMLYVVASAITGYVQNYVSG-PAFFGLSGVVYAVLGYVFIRDK  128 (189)
T ss_dssp             HHHGGGCCSSHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHC-SCCCCSHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcCC-CCcccchHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999877754 5689999999999998876555


Q ss_pred             hhhHHhhHHHHHHHHHHHHHHHHHhhc-cCCchhHHHHHHHHHHHHHHHHHHhh
Q 036462          253 TNWTIYANKLAALLTLIVIISINLAVG-ILPKVDNFAHIGGFLSGFLLGFVLLI  305 (390)
Q Consensus       253 ~~~~~~~~~~~~~~~l~~~~~~~l~~~-~~p~i~~~aHLgG~l~G~l~g~~~~~  305 (390)
                      .++.....+......++..+.+.+... ..+++|+.||++|+++|+++|+++.+
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~aHl~G~l~G~~~g~~~~~  182 (189)
T d2nr9a1         129 LNHHLFDLPEGFFTMLLVGIALGFISPLFGVEMGNAAHISGLIVGLIWGFIDSK  182 (189)
T ss_dssp             SSTTSCCCCCSSTTTTTTTTTHHHHSCSSCCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhhhHhccHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHc
Confidence            444432222111111222223333332 35789999999999999999988854