Citrus Sinensis ID: 036474

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640------
MITGKDIYDVLAAIVPLYVAMILAYGSVRWWKIFTPDQCSGINRFVAVFAVPLLSFHFISLNDPYAMNYHFIAADSLQKVVILAALFLWQAFTKHGNLEWMITLFSLSTLPNTLVMGIPLLKAMYGDDSGSLMVQVVVLQSVIWYTLMLFMFEYRGAKLLITEQFPETAGSITSFRVDSDVVSLNGREPLQTDAEIGDDGKLHVVVRRSSASSIVSSFNKSHGLNSLTSMTPRASNLTGVEIYSVQSSREPTPRASSFNQNDFYAMFASKAPSPKHGYTNSFQGGIGDVYSLQSSKGATPRTSNFDEEMFKLGNKKRGGRSMSGELFNGGLVSSYPPPNPMFSGGTSAGARKKESAGGGGSGGGAAPAGVPNNKELHMFVWSSTASPVSEGNLRHAVNRAASADFAGVDSSNKAALYHENAASKAMHELIENMSPASKVNGERNLEIEDGSKFPSSGSPYSCQKKMVMEEGDAAKKHQMPPASVMTRLILIMVWRKLIRNPNTYSSVLGLIWSLVSYRWHIKMPTIMSGSISILSDAGLGMAMFSLGLFMALQPKIIACGKSVATFAMAVRFLTGPAVIAATSIAIGLRGVLLHIAIVQAALPQGIVPFVFAKEYNVHPDILSTAVIFGMLIALPITILYYVLLGL
cccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHccccccEEEHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccEEccccccccccccccccccEEEEEEEccccccccccccccccccccccccccccccccEEEEccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHcccHHHHHcccccccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHcccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcc
cccHHHHHHHHHHHHHHHHHHHHHHHHHHEHHEccHHHHcHHHHHHHHHHHHHHHHHHEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEEHccccccEEEHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEEcccEEEcccccccEEEEEEcccccEEEEEEEccccccccccccccccccccccccccccccccEEEEEEcccccccccccccccHHHHHHcccccccccccccccccccccEEEcccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHcc
MITGKDIYDVLAAIVPLYVAMILAYGSVrwwkiftpdqcsgiNRFVAVFAVPLLSfhfislndpyamnyhfiaADSLQKVVILAALFLWQAFTKHGNLEWMITLFSlstlpntlvMGIPLlkamygddsgsLMVQVVVLQSVIWYTLMLFMFEYRGAKLLiteqfpetagsitsfrvdsdvvslngreplqtdaeigddgkLHVVVRRSSASSIVSSFnkshglnsltsmtprasnltgveiysvqssreptprassfnqndfyamfaskapspkhgytnsfqggigdvyslqsskgatprtsnfdEEMFKlgnkkrggrsmsgelfngglvssypppnpmfsggtsagarkkesaggggsgggaapagvpnnkeLHMFVWsstaspvsegnlRHAVNRaasadfagvdssnkaALYHENAASKAMHELIEnmspaskvngernleiedgskfpssgspyscqKKMVMEEgdaakkhqmppasVMTRLILIMVWRKLirnpntysSVLGLIWSLVSYRwhikmptimsgsisilsdAGLGMAMFSLGLFMALQPKIIACGKSVATFAMAVRFLTGPAVIAATSIAIGLRGVLLHIAIVQAalpqgivpFVFAkeynvhpdiLSTAVIFGMLIALPITILYYVLLGL
MITGKDIYDVLAAIVPLYVAMILAYGSVRWWKIFTPDQCSGINRFVAVFAVPLLSFHFISLNDPYAMNYHFIAADSLQKVVILAALFLWQAFTKHGNLEWMITLFSLSTLPNTLVMGIPLLKAMYGDDSGSLMVQVVVLQSVIWYTLMLFMFEYRGAKLLITEQFPETAGSITSFRVDSDVVSLNGReplqtdaeigddgklHVVVRRSSASSIVSsfnkshglnsltsmTPRASNLTGVEIYSvqssreptprasSFNQNDFYAMFASKAPSPKHGYTNSFQGGIGDVYSLQSSKgatprtsnfdeEMFKlgnkkrggrsMSGELFNGGLVSSYPPPNPMFSGGTSAGARKKESAGGGGSGGGAAPAGVPNNKELHMFVWSSTASPVSEGNLRHAVNRAASADFAGVDSSNKAALYHENAASKAMHELIENMSPASKVNGERNLEiedgskfpssgspYSCQKKMVMEEGDaakkhqmppaSVMTRLILIMVWRKLIRNPNTYSSVLGLIWSLVSYRWHIKMPTIMSGSISILSDAGLGMAMFSLGLFMALQPKIIACGKSVATFAMAVRFLTGPAVIAATSIAIGLRGVLLHIAIVQAALPQGIVPFVFAKEYNVHPDILSTAVIFGMLIALPITILYYVLLGL
MITGKDIYDVLAAIVPLYVAMILAYGSVRWWKIFTPDQCSGINRFVAVFAVPLLSFHFISLNDPYAMNYHFIAADSLQKVVILAALFLWQAFTKHGNLEWMITLFSLSTLPNTLVMGIPLLKAMYGDDSGslmvqvvvlqsvIWYTLMLFMFEYRGAKLLITEQFPETAGSITSFRVDSDVVSLNGREPLQTDAEIGDDGKLHvvvrrssassivssFNKSHGLNSLTSMTPRASNLTGVEIYSVQSSREPTPRASSFNQNDFYAMFASKAPSPKHGYTNSFQGGIGDVYSLQSSKGATPRTSNFDEEMFKLGNKKRGGRSMSGELFNGGLVSSYPPPNPMFSGGTsagarkkesaggggsgggaapagVPNNKELHMFVWSSTASPVSEGNLRHAVNRAASADFAGVDSSNKAALYHENAASKAMHELIENMSPASKVNGERNLEIEDGSKFPSSGSPYSCQKKMVMEEGDAAKKHQMPPASVMTRLILIMVWRKLIRNPNTYSSVLGLIWSLVSYRWHIKMPTIMSGSISILSDAGLGMAMFSLGLFMALQPKIIACGKSVATFAMAVRFLTGPAVIAATSIAIGLRGVLLHIAIVQAALPQGIVPFVFAKEYNVHPDILSTAVIFGMLIALPITILYYVLLGL
****KDIYDVLAAIVPLYVAMILAYGSVRWWKIFTPDQCSGINRFVAVFAVPLLSFHFISLNDPYAMNYHFIAADSLQKVVILAALFLWQAFTKHGNLEWMITLFSLSTLPNTLVMGIPLLKAMYGDDSGSLMVQVVVLQSVIWYTLMLFMFEYRGAKLLITEQFPETAGSITSFRVDSDVVSL*****************LHVV****************************************************************************************************************************************************************************MFVW******************************************************************************************************VMTRLILIMVWRKLIRNPNTYSSVLGLIWSLVSYRWHIKMPTIMSGSISILSDAGLGMAMFSLGLFMALQPKIIACGKSVATFAMAVRFLTGPAVIAATSIAIGLRGVLLHIAIVQAALPQGIVPFVFAKEYNVHPDILSTAVIFGMLIALPITILYYVLL**
**TGKDIYDVLAAIVPLYVAMILAYGSVRWWKIFTPDQCSGINRFVAVFAVPLLSFHFISLNDPYAMNYHFIAADSLQKVVILAALFLWQAFTKHGNLEWMITLFSLSTLPNTLVMGIPLLKAMYGDDSGSLMVQVVVLQSVIWYTLMLFMFEYRGAK******************************************************************************LTGVEI*******************DFYAMF*************************************************************************************************************HMFVWSS*A******************************************************************************************************LILIMVWRKLIRNPNTYSSVLGLIWSLVSYRWHIKMPTIMSGSISILSDAGLGMAMFSLGLFMALQPKIIACGKSVATFAMAVRFLTGPAVIAATSIAIGLRGVLLHIAIVQAALPQGIVPFVFAKEYNVHPDILSTAVIFGMLIALPITILYYVLLGL
MITGKDIYDVLAAIVPLYVAMILAYGSVRWWKIFTPDQCSGINRFVAVFAVPLLSFHFISLNDPYAMNYHFIAADSLQKVVILAALFLWQAFTKHGNLEWMITLFSLSTLPNTLVMGIPLLKAMYGDDSGSLMVQVVVLQSVIWYTLMLFMFEYRGAKLLITEQFPETAGSITSFRVDSDVVSLNGREPLQTDAEIGDDGKLHVVVRRSSASSIVSSFNKSHGLNSLTSMTPRASNLTGVEIYS**********ASSFNQNDFYAMFASKAPSPKHGYTNSFQGGIGDVYSL**********SNFDEEMFKLGNKKRGGRSMSGELFNGGLVSSYPPPNPMFSG*********************APAGVPNNKELHMFVWSSTASPVSEGNLRHAVNRAASADFAGVDSSNKAALYHENAASKAMHELIENMSPASKVNGERNLEIEDGSKFPSSGSPYSCQKKMVME**********PPASVMTRLILIMVWRKLIRNPNTYSSVLGLIWSLVSYRWHIKMPTIMSGSISILSDAGLGMAMFSLGLFMALQPKIIACGKSVATFAMAVRFLTGPAVIAATSIAIGLRGVLLHIAIVQAALPQGIVPFVFAKEYNVHPDILSTAVIFGMLIALPITILYYVLLGL
MITGKDIYDVLAAIVPLYVAMILAYGSVRWWKIFTPDQCSGINRFVAVFAVPLLSFHFISLNDPYAMNYHFIAADSLQKVVILAALFLWQAFTKHGNLEWMITLFSLSTLPNTLVMGIPLLKAMYGDDSGSLMVQVVVLQSVIWYTLMLFMFEYRGAKLLITEQFPETAGSITSFRVDSDVVSLNGREPLQTDAEIGDDGKLHVVVRRS**********************PRASNLTGVEIYSVQSSREPTPRASSFNQNDFYAMFASKAPSPKHGYTNSFQGGIGDVYSLQSSKGATPRTSNFDEEMFKL****RGGRS********G**SSY**************************************KELHMFVWSST*********************************************************************************************QMPPASVMTRLILIMVWRKLIRNPNTYSSVLGLIWSLVSYRWHIKMPTIMSGSISILSDAGLGMAMFSLGLFMALQPKIIACGKSVATFAMAVRFLTGPAVIAATSIAIGLRGVLLHIAIVQAALPQGIVPFVFAKEYNVHPDILSTAVIFGMLIALPITILYYVLLGL
oooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHii
oooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoo
oooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoo
oooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooo
oooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MITGKDIYDVLAAIVPLYVAMILAYGSVRWWKIFTPDQCSGINRFVAVFAVPLLSFHFISLNDPYAMNYHFIAADSLQKVVILAALFLWQAFTKHGNLEWMITLFSLSTLPNTLVMGIPLLKAMYGDDSGSLMVQVVVLQSVIWYTLMLFMFEYRGAKLLITEQFPETAGSITSFRVDSDVVSLNGREPLQTDAEIGDDGKLHVVVRRSSASSIVSSFNKSHGLNSLTSMTPRASNLTGVEIYSVQSSREPTPRASSFNQNDFYAMFASKAPSPKHGYTNSFQGGIGDVYSLQSSKGATPRTSNFDEEMFKLGNKKRGGRSMSGELFNGGLVSSYPPPNPMFSGGTSAGARKKESAGGGGSGGGAAPAGVPNNKELHMFVWSSTASPVSEGNLRHAVNRAASADFAGVDSSNKAALYHENAASKAMHELIENMSPASKVNGERNLEIEDGSKFPSSGSPYSCQKKMVMEEGDAAKKHQMPPASVMTRLILIMVWRKLIRNPNTYSSVLGLIWSLVSYRWHIKMPTIMSGSISILSDAGLGMAMFSLGLFMALQPKIIACGKSVATFAMAVRFLTGPAVIAATSIAIGLRGVLLHIAIVQAALPQGIVPFVFAKEYNVHPDILSTAVIFGMLIALPITILYYVLLGL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query646 2.2.26 [Sep-21-2011]
Q9LU77647 Auxin efflux carrier comp yes no 0.984 0.982 0.777 0.0
Q651V6630 Probable auxin efflux car yes no 0.933 0.957 0.646 0.0
Q9S7Z8640 Auxin efflux carrier comp no no 0.942 0.951 0.584 0.0
Q8RWZ6616 Auxin efflux carrier comp no no 0.938 0.983 0.592 0.0
Q940Y5619 Auxin efflux carrier comp no no 0.934 0.975 0.588 0.0
Q67UL3592 Probable auxin efflux car no no 0.900 0.983 0.576 0.0
Q5SMQ9595 Auxin efflux carrier comp no no 0.914 0.993 0.576 0.0
Q9C6B8622 Auxin efflux carrier comp no no 0.944 0.980 0.582 0.0
Q5VP70618 Probable auxin efflux car no no 0.908 0.949 0.565 0.0
P0C0X5554 Probable auxin efflux car no no 0.835 0.974 0.557 0.0
>sp|Q9LU77|PIN2_ARATH Auxin efflux carrier component 2 OS=Arabidopsis thaliana GN=PIN2 PE=1 SV=2 Back     alignment and function desciption
 Score =  969 bits (2505), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 511/657 (77%), Positives = 564/657 (85%), Gaps = 21/657 (3%)

Query: 1   MITGKDIYDVLAAIVPLYVAMILAYGSVRWWKIFTPDQCSGINRFVAVFAVPLLSFHFIS 60
           MITGKD+YDVLAA+VPLYVAMILAYGSVRWW IFTPDQCSGINRFVAVFAVPLLSFHFIS
Sbjct: 1   MITGKDMYDVLAAMVPLYVAMILAYGSVRWWGIFTPDQCSGINRFVAVFAVPLLSFHFIS 60

Query: 61  LNDPYAMNYHFIAADSLQKVVILAALFLWQAFTKHGNLEWMITLFSLSTLPNTLVMGIPL 120
            NDPYAMNYHF+AADSLQKVVILAALFLWQAF++ G+LEWMITLFSLSTLPNTLVMGIPL
Sbjct: 61  SNDPYAMNYHFLAADSLQKVVILAALFLWQAFSRRGSLEWMITLFSLSTLPNTLVMGIPL 120

Query: 121 LKAMYGDDSGSLMVQVVVLQSVIWYTLMLFMFEYRGAKLLITEQFPETAGSITSFRVDSD 180
           L+AMYGD SG+LMVQ+VVLQS+IWYTLMLF+FE+RGAKLLI+EQFPETAGSITSFRVDSD
Sbjct: 121 LRAMYGDFSGNLMVQIVVLQSIIWYTLMLFLFEFRGAKLLISEQFPETAGSITSFRVDSD 180

Query: 181 VVSLNGREPLQTDAEIGDDGKLHVVVRR-SSASSIVSSFNKSH--GLNSLTSMTPRASNL 237
           V+SLNGREPLQTDAEIGDDGKLHVVVRR S+ASS++SSFNKSH  GLNS + +TPRASNL
Sbjct: 181 VISLNGREPLQTDAEIGDDGKLHVVVRRSSAASSMISSFNKSHGGGLNS-SMITPRASNL 239

Query: 238 TGVEIYSVQSSREPTPRASSFNQNDFYAMF-ASKAPSPKHGYTNSF----QGGIGDVYSL 292
           TGVEIYSVQSSREPTPRASSFNQ DFYAMF ASKAPSP+HGYTNS+     G  GDVYSL
Sbjct: 240 TGVEIYSVQSSREPTPRASSFNQTDFYAMFNASKAPSPRHGYTNSYGGAGAGPGGDVYSL 299

Query: 293 QSSKGATPRTSNFDEEMFKLGNKK-RGGRSMSGELFNGGLVSSYPPPNPMFSGGTSAGAR 351
           QSSKG TPRTSNFDEE+ K   K  RGGRSMSGEL+N   V SYPPPNPMF+G TS GA 
Sbjct: 300 QSSKGVTPRTSNFDEEVMKTAKKAGRGGRSMSGELYNNNSVPSYPPPNPMFTGSTS-GAS 358

Query: 352 KKESAGGGGSGGGAAPAGVPNNKELHMFVWSSTASPVSEGNLRHAVNRAASADFAGVDSS 411
             +    GG G G        NKE++MFVWSS+ASPVSE N ++A+ R +S D   V + 
Sbjct: 359 GVKKKESGGGGSGGGVGVGGQNKEMNMFVWSSSASPVSEANAKNAMTRGSSTD---VSTD 415

Query: 412 NKAAL-YHENAASKAMHELIENMSPASKVNGERNLEIEDGSKFPSSGSPYSCQKKMVMEE 470
            K ++  H+N A+KAM  LIENMSP  K + E + +  +G K     SPY  +K   +E+
Sbjct: 416 PKVSIPPHDNLATKAMQNLIENMSPGRKGHVEMDQDGNNGGK-----SPYMGKKGSDVED 470

Query: 471 GD-AAKKHQMPPASVMTRLILIMVWRKLIRNPNTYSSVLGLIWSLVSYRWHIKMPTIMSG 529
           G    +K QMPPASVMTRLILIMVWRKLIRNPNTYSS+ GL WSLVS++W+IKMPTIMSG
Sbjct: 471 GGPGPRKQQMPPASVMTRLILIMVWRKLIRNPNTYSSLFGLAWSLVSFKWNIKMPTIMSG 530

Query: 530 SISILSDAGLGMAMFSLGLFMALQPKIIACGKSVATFAMAVRFLTGPAVIAATSIAIGLR 589
           SISILSDAGLGMAMFSLGLFMALQPKIIACGKSVA FAMAVRFLTGPAVIAATSIAIG+R
Sbjct: 531 SISILSDAGLGMAMFSLGLFMALQPKIIACGKSVAGFAMAVRFLTGPAVIAATSIAIGIR 590

Query: 590 GVLLHIAIVQAALPQGIVPFVFAKEYNVHPDILSTAVIFGMLIALPITILYYVLLGL 646
           G LLHIAIVQAALPQGIVPFVFAKEYNVHPDILSTAVIFGML+ALP+T+LYYVLLGL
Sbjct: 591 GDLLHIAIVQAALPQGIVPFVFAKEYNVHPDILSTAVIFGMLVALPVTVLYYVLLGL 647
Acts as a component of the auxin efflux carrier. Seems to be involved in the root-specific auxin transport, and mediates the root gravitropism. Its particular localization suggest a role in the translocation of auxin towards the elongation zone.
Arabidopsis thaliana (taxid: 3702)
>sp|Q651V6|PIN2_ORYSJ Probable auxin efflux carrier component 2 OS=Oryza sativa subsp. japonica GN=PIN2 PE=2 SV=1 Back     alignment and function description
>sp|Q9S7Z8|PIN3_ARATH Auxin efflux carrier component 3 OS=Arabidopsis thaliana GN=PIN3 PE=1 SV=1 Back     alignment and function description
>sp|Q8RWZ6|PIN4_ARATH Auxin efflux carrier component 4 OS=Arabidopsis thaliana GN=PIN4 PE=1 SV=1 Back     alignment and function description
>sp|Q940Y5|PIN7_ARATH Auxin efflux carrier component 7 OS=Arabidopsis thaliana GN=PIN7 PE=1 SV=2 Back     alignment and function description
>sp|Q67UL3|PIN1C_ORYSJ Probable auxin efflux carrier component 1c OS=Oryza sativa subsp. japonica GN=PIN1C PE=2 SV=1 Back     alignment and function description
>sp|Q5SMQ9|PIN1_ORYSJ Auxin efflux carrier component 1 OS=Oryza sativa subsp. japonica GN=PIN1 PE=2 SV=1 Back     alignment and function description
>sp|Q9C6B8|PINI_ARATH Auxin efflux carrier component 1 OS=Arabidopsis thaliana GN=PIN1 PE=1 SV=1 Back     alignment and function description
>sp|Q5VP70|PIN3A_ORYSJ Probable auxin efflux carrier component 3a OS=Oryza sativa subsp. japonica GN=PIN3A PE=2 SV=1 Back     alignment and function description
>sp|P0C0X5|PIN1B_ORYSJ Probable auxin efflux carrier component 1b OS=Oryza sativa subsp. japonica GN=PIN1B PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query646
224142669633 auxin efflux carrier component [Populus 0.978 0.998 0.859 0.0
255573559636 Auxin efflux carrier component, putative 0.973 0.988 0.854 0.0
351725237626 auxin efflux carrier protein 4 [Glycine 0.948 0.979 0.845 0.0
351724135652 auxin efflux carrier protein 3 [Glycine 0.976 0.967 0.830 0.0
449457209645 PREDICTED: auxin efflux carrier componen 0.984 0.986 0.810 0.0
300068803649 auxin efflux facilitator [Cucumis sativu 0.982 0.978 0.804 0.0
225445972630 PREDICTED: auxin efflux carrier componen 0.970 0.995 0.804 0.0
357479481625 Auxin efflux carrier component [Medicago 0.959 0.992 0.795 0.0
297793227648 hypothetical protein ARALYDRAFT_918870 [ 0.986 0.983 0.780 0.0
18423936647 auxin efflux carrier component 2 [Arabid 0.984 0.982 0.777 0.0
>gi|224142669|ref|XP_002324677.1| auxin efflux carrier component [Populus trichocarpa] gi|222866111|gb|EEF03242.1| auxin efflux carrier component [Populus trichocarpa] Back     alignment and taxonomy information
 Score = 1125 bits (2910), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 556/647 (85%), Positives = 598/647 (92%), Gaps = 15/647 (2%)

Query: 1   MITGKDIYDVLAAIVPLYVAMILAYGSVRWWKIFTPDQCSGINRFVAVFAVPLLSFHFIS 60
           MITGKDIYDVLAAIVPLYVAMILAYGSVRWWKIFTPDQCSGINRFVAVFAVPLLSFHFIS
Sbjct: 1   MITGKDIYDVLAAIVPLYVAMILAYGSVRWWKIFTPDQCSGINRFVAVFAVPLLSFHFIS 60

Query: 61  LNDPYAMNYHFIAADSLQKVVILAALFLWQAFTKHGNLEWMITLFSLSTLPNTLVMGIPL 120
            NDPYAMN+ FIAAD+LQKVVIL ALF+WQAF+K GNLEWMITLFSLSTLPNTLVMGIPL
Sbjct: 61  SNDPYAMNFRFIAADTLQKVVILGALFIWQAFSKRGNLEWMITLFSLSTLPNTLVMGIPL 120

Query: 121 LKAMYGDDSGSLMVQVVVLQSVIWYTLMLFMFEYRGAKLLITEQFPETAGSITSFRVDSD 180
           LKAMYGD SG+LMVQ+VVLQSVIWYT+MLF+FEYRGA+LLI+EQFPETAGSITSFRVDSD
Sbjct: 121 LKAMYGDFSGNLMVQIVVLQSVIWYTIMLFLFEYRGARLLISEQFPETAGSITSFRVDSD 180

Query: 181 VVSLNGREPLQTDAEIGDDGKLHVVVRRSSASSIVSSFNKSHGLNSLTSMTPRASNLTGV 240
           VVSLNGREPLQ DAEIGDDGKLHVVV+RS+ASSIVSSFNKSHGLNS+TSMTPRASNLTGV
Sbjct: 181 VVSLNGREPLQADAEIGDDGKLHVVVKRSNASSIVSSFNKSHGLNSITSMTPRASNLTGV 240

Query: 241 EIYSVQSSREPTPRASSFNQNDFYAMFASKAPSPKHGYTNSFQGGIGDVYSLQSSKGATP 300
           EIYSVQSSREPTPRASSFNQ DFYAMFASKA SPKHGYTNSFQGGIGDVYSLQSSKGATP
Sbjct: 241 EIYSVQSSREPTPRASSFNQTDFYAMFASKAASPKHGYTNSFQGGIGDVYSLQSSKGATP 300

Query: 301 RTSNFDEEMFKLGNKKRGGRSMSGELFNGG-LVSSYPPPNPMFSGGTSAGARKKESAGGG 359
           RTSN+DEEM KLG KK+G  +MSGELFNGG LVSSYPPPNPMFSG TS G +KKE     
Sbjct: 301 RTSNYDEEMLKLG-KKKGRTNMSGELFNGGSLVSSYPPPNPMFSGSTSGGPKKKE----- 354

Query: 360 GSGGGAAPAGVPNNKELHMFVWSSTASPVSEGNLRHAVNRAASADFAGVDSSNKAALYHE 419
            SG GA P     NKELHMFVWSS+ASPVSEGNLRHAVNRAAS DF GV   +KAA   E
Sbjct: 355 -SGSGAMP-----NKELHMFVWSSSASPVSEGNLRHAVNRAASTDF-GVTDPSKAAFQPE 407

Query: 420 NAASKAMHELIENMSPASKVNGERNLEIEDGSKFPSSGSPYSCQKKMVMEEGDAAKKHQM 479
           +AASKAM++LIENMSP+ K +GE+  ++EDG KFP + SP++CQKKM M   D +KKHQM
Sbjct: 408 SAASKAMNQLIENMSPSGKWSGEKEHDVEDGCKFPQNVSPFTCQKKMDM-AADGSKKHQM 466

Query: 480 PPASVMTRLILIMVWRKLIRNPNTYSSVLGLIWSLVSYRWHIKMPTIMSGSISILSDAGL 539
           PPASVMTRLILIMVWRKLIRNPNTYSS+LG+IWSLVSYRW+IKMP+I+SGSI+ILSDAGL
Sbjct: 467 PPASVMTRLILIMVWRKLIRNPNTYSSLLGVIWSLVSYRWNIKMPSIVSGSIAILSDAGL 526

Query: 540 GMAMFSLGLFMALQPKIIACGKSVATFAMAVRFLTGPAVIAATSIAIGLRGVLLHIAIVQ 599
           GMAMFSLGLFMALQPKIIACGK+VATFAMAVRFLTGPAVIAATSIAIG+RGVLLH+AIVQ
Sbjct: 527 GMAMFSLGLFMALQPKIIACGKTVATFAMAVRFLTGPAVIAATSIAIGIRGVLLHVAIVQ 586

Query: 600 AALPQGIVPFVFAKEYNVHPDILSTAVIFGMLIALPITILYYVLLGL 646
           AALPQGIVPFVFAKEYNVHPDILSTAVIFGMLIALPIT+LYYVLLG+
Sbjct: 587 AALPQGIVPFVFAKEYNVHPDILSTAVIFGMLIALPITVLYYVLLGV 633

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255573559|ref|XP_002527704.1| Auxin efflux carrier component, putative [Ricinus communis] gi|223532935|gb|EEF34703.1| Auxin efflux carrier component, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|351725237|ref|NP_001238365.1| auxin efflux carrier protein 4 [Glycine max] gi|222142551|gb|ACM45962.1| auxin efflux carrier protein 4 [Glycine max] Back     alignment and taxonomy information
>gi|351724135|ref|NP_001237559.1| auxin efflux carrier protein 3 [Glycine max] gi|222142549|gb|ACM45961.1| auxin efflux carrier protein 3 [Glycine max] Back     alignment and taxonomy information
>gi|449457209|ref|XP_004146341.1| PREDICTED: auxin efflux carrier component 2-like [Cucumis sativus] gi|449520585|ref|XP_004167314.1| PREDICTED: auxin efflux carrier component 2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|300068803|dbj|BAJ10465.1| auxin efflux facilitator [Cucumis sativus] Back     alignment and taxonomy information
>gi|225445972|ref|XP_002266059.1| PREDICTED: auxin efflux carrier component 2 isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|357479481|ref|XP_003610026.1| Auxin efflux carrier component [Medicago truncatula] gi|28204657|gb|AAM55298.2| auxin efflux carrier protein [Medicago truncatula] gi|355511081|gb|AES92223.1| Auxin efflux carrier component [Medicago truncatula] Back     alignment and taxonomy information
>gi|297793227|ref|XP_002864498.1| hypothetical protein ARALYDRAFT_918870 [Arabidopsis lyrata subsp. lyrata] gi|297310333|gb|EFH40757.1| hypothetical protein ARALYDRAFT_918870 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|18423936|ref|NP_568848.1| auxin efflux carrier component 2 [Arabidopsis thaliana] gi|42558886|sp|Q9LU77.2|PIN2_ARATH RecName: Full=Auxin efflux carrier component 2; Short=AtPIN2; AltName: Full=Auxin efflux carrier AGR; AltName: Full=Ethylene-insensitive root 1; Short=AtEIR1; AltName: Full=Polar-auxin-transport efflux component AGR1; AltName: Full=Protein AGRAVITROPIC 1; Short=AtAGR1; AltName: Full=Protein WAVY 6 gi|3377507|gb|AAC39513.1| auxin transport protein EIR1 [Arabidopsis thaliana] gi|3661620|gb|AAC61781.1| putative auxin efflux carrier AGR [Arabidopsis thaliana] gi|3746886|gb|AAC84042.1| polar-auxin-transport efflux component AGRAVITROPIC 1 [Arabidopsis thaliana] gi|4206709|gb|AAD11780.1| root gravitropism control protein [Arabidopsis thaliana] gi|19310454|gb|AAL84962.1| AT5g57090/MUL3_3 [Arabidopsis thaliana] gi|24797062|gb|AAN64543.1| At5g57090/MUL3_3 [Arabidopsis thaliana] gi|51970858|dbj|BAD44121.1| root gravitropism control protein (PIN2) [Arabidopsis thaliana] gi|332009462|gb|AED96845.1| auxin efflux carrier component 2 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query646
TAIR|locus:2175559647 EIR1 "AT5G57090" [Arabidopsis 0.984 0.982 0.738 3.7e-245
TAIR|locus:2035037622 PIN1 "AT1G73590" [Arabidopsis 0.599 0.622 0.544 2.1e-180
TAIR|locus:2038781616 PIN4 "AT2G01420" [Arabidopsis 0.592 0.621 0.521 1.2e-179
TAIR|locus:2201225619 PIN7 "AT1G23080" [Arabidopsis 0.620 0.647 0.495 1.5e-177
TAIR|locus:2013975640 PIN3 "AT1G70940" [Arabidopsis 0.391 0.395 0.642 3.1e-171
UNIPROTKB|Q5SMQ9595 PIN1 "Auxin efflux carrier com 0.456 0.495 0.573 2.1e-167
TAIR|locus:2025312570 PIN6 "AT1G77110" [Arabidopsis 0.458 0.519 0.458 3.8e-129
TAIR|locus:2171392351 PIN5 "AT5G16530" [Arabidopsis 0.241 0.444 0.538 4.4e-88
TAIR|locus:2147835367 PIN8 "AT5G15100" [Arabidopsis 0.275 0.485 0.550 5.7e-86
UNIPROTKB|P0AA49314 yfdV "YfdV AEC Transporter" [E 0.205 0.423 0.230 1.7e-06
TAIR|locus:2175559 EIR1 "AT5G57090" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2362 (836.5 bits), Expect = 3.7e-245, P = 3.7e-245
 Identities = 485/657 (73%), Positives = 531/657 (80%)

Query:     1 MITGKDIYDVLAAIVPLYVAMILAYGSVRWWKIFTPDQCSGINRFVAVFAVPLLSFHFIS 60
             MITGKD+YDVLAA+VPLYVAMILAYGSVRWW IFTPDQCSGINRFVAVFAVPLLSFHFIS
Sbjct:     1 MITGKDMYDVLAAMVPLYVAMILAYGSVRWWGIFTPDQCSGINRFVAVFAVPLLSFHFIS 60

Query:    61 LNDPYAMNYHFIAADSLQKVVILAALFLWQAFTKHGNLEWMITLFSLSTLPNTLVMGIPL 120
              NDPYAMNYHF+AADSLQKVVILAALFLWQAF++ G+LEWMITLFSLSTLPNTLVMGIPL
Sbjct:    61 SNDPYAMNYHFLAADSLQKVVILAALFLWQAFSRRGSLEWMITLFSLSTLPNTLVMGIPL 120

Query:   121 LKAMYGDDSGXXXXXXXXXXXXIWYTLMLFMFEYRGAKLLITEQFPETAGSITSFRVDSD 180
             L+AMYGD SG            IWYTLMLF+FE+RGAKLLI+EQFPETAGSITSFRVDSD
Sbjct:   121 LRAMYGDFSGNLMVQIVVLQSIIWYTLMLFLFEFRGAKLLISEQFPETAGSITSFRVDSD 180

Query:   181 VVSLNGREPLQTDAEIGDDGKLHXXXXXXXXXXXX-XXFNKSHG--LNSLTSMTPRASNL 237
             V+SLNGREPLQTDAEIGDDGKLH               FNKSHG  LNS + +TPRASNL
Sbjct:   181 VISLNGREPLQTDAEIGDDGKLHVVVRRSSAASSMISSFNKSHGGGLNS-SMITPRASNL 239

Query:   238 TGVEIYSVQSSREPTPRASSFNQNDFYAMF-ASKAPSPKHGYTNSFQG-GIG---DVYSL 292
             TGVEIYSVQSSREPTPRASSFNQ DFYAMF ASKAPSP+HGYTNS+ G G G   DVYSL
Sbjct:   240 TGVEIYSVQSSREPTPRASSFNQTDFYAMFNASKAPSPRHGYTNSYGGAGAGPGGDVYSL 299

Query:   293 QSSKGATPRTSNFDEEMFKLGNKK-RGGRSMSGELFNGGLVSSYPPPNPMFSGGTXXXXX 351
             QSSKG TPRTSNFDEE+ K   K  RGGRSMSGEL+N   V SYPPPNPMF+G T     
Sbjct:   300 QSSKGVTPRTSNFDEEVMKTAKKAGRGGRSMSGELYNNNSVPSYPPPNPMFTGSTSGASG 359

Query:   352 XXXXXXXXXXXXXXXXXXVPNNKELHMFVWSSTASPVSEGNLRHAVNRAASADFAGVDSS 411
                                  NKE++MFVWSS+ASPVSE N ++A+ R +S D   V + 
Sbjct:   360 VKKKESGGGGSGGGVGVG-GQNKEMNMFVWSSSASPVSEANAKNAMTRGSSTD---VSTD 415

Query:   412 NKAALY-HENAASKAMHELIENMSPASKVNGERNLEIEDGSKFPSSGSPYSCQKKMVMEE 470
              K ++  H+N A+KAM  LIENMSP  K + E + +  +G K     SPY  +K   +E+
Sbjct:   416 PKVSIPPHDNLATKAMQNLIENMSPGRKGHVEMDQDGNNGGK-----SPYMGKKGSDVED 470

Query:   471 GDAA-KKHQMPPASVMTRLILIMVWRKLIRNPNTYSSVLGLIWSLVSYRWHIKMPTIMSG 529
             G    +K QMPPASVMTRLILIMVWRKLIRNPNTYSS+ GL WSLVS++W+IKMPTIMSG
Sbjct:   471 GGPGPRKQQMPPASVMTRLILIMVWRKLIRNPNTYSSLFGLAWSLVSFKWNIKMPTIMSG 530

Query:   530 SISILSDAGLGMAMFSLGLFMALQPKIIACGKSVATFAMAVRFLTGPAVIAATSIAIGLR 589
             SISILSDAGLGMAMFSLGLFMALQPKIIACGKSVA FAMAVRFLTGPAVIAATSIAIG+R
Sbjct:   531 SISILSDAGLGMAMFSLGLFMALQPKIIACGKSVAGFAMAVRFLTGPAVIAATSIAIGIR 590

Query:   590 GVLLHIAIVQAALPQGIVPFVFAKEYNVHPDILSTAVIFGMLIALPITILYYVLLGL 646
             G LLHIAIVQAALPQGIVPFVFAKEYNVHPDILSTAVIFGML+ALP+T+LYYVLLGL
Sbjct:   591 GDLLHIAIVQAALPQGIVPFVFAKEYNVHPDILSTAVIFGMLVALPVTVLYYVLLGL 647
GO:0005215 "transporter activity" evidence=ISS
GO:0009672 "auxin:hydrogen symporter activity" evidence=ISS
GO:0009926 "auxin polar transport" evidence=ISS;RCA;IMP
GO:0016021 "integral to membrane" evidence=IEA
GO:0055085 "transmembrane transport" evidence=IEA
GO:0000323 "lytic vacuole" evidence=IDA
GO:0005886 "plasma membrane" evidence=IDA
GO:0009749 "response to glucose stimulus" evidence=IEP
GO:0008361 "regulation of cell size" evidence=RCA
GO:0009637 "response to blue light" evidence=RCA
GO:0009640 "photomorphogenesis" evidence=RCA
GO:0009733 "response to auxin stimulus" evidence=IMP;RCA
GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA
GO:0046685 "response to arsenic-containing substance" evidence=RCA
GO:0048364 "root development" evidence=RCA
GO:0048443 "stamen development" evidence=RCA
GO:0009723 "response to ethylene stimulus" evidence=IMP
GO:0009925 "basal plasma membrane" evidence=IDA
GO:0009958 "positive gravitropism" evidence=IMP
GO:0010329 "auxin efflux transmembrane transporter activity" evidence=IDA
TAIR|locus:2035037 PIN1 "AT1G73590" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2038781 PIN4 "AT2G01420" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2201225 PIN7 "AT1G23080" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2013975 PIN3 "AT1G70940" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q5SMQ9 PIN1 "Auxin efflux carrier component 1" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2025312 PIN6 "AT1G77110" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2171392 PIN5 "AT5G16530" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2147835 PIN8 "AT5G15100" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|P0AA49 yfdV "YfdV AEC Transporter" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9LU77PIN2_ARATHNo assigned EC number0.77770.98450.9829yesno
Q651V6PIN2_ORYSJNo assigned EC number0.64630.93340.9571yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
PIN9
auxin efflux carrier component (633 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query646
TIGR00946321 TIGR00946, 2a69, he Auxin Efflux Carrier (AEC) Fam 7e-59
pfam03547321 pfam03547, Mem_trans, Membrane transport protein 2e-53
TIGR00946321 TIGR00946, 2a69, he Auxin Efflux Carrier (AEC) Fam 2e-46
pfam03547321 pfam03547, Mem_trans, Membrane transport protein 4e-46
COG0679311 COG0679, COG0679, Predicted permeases [General fun 2e-14
COG0679311 COG0679, COG0679, Predicted permeases [General fun 7e-09
>gnl|CDD|233203 TIGR00946, 2a69, he Auxin Efflux Carrier (AEC) Family Back     alignment and domain information 
 Score =  200 bits (510), Expect = 7e-59
 Identities = 77/161 (47%), Positives = 101/161 (62%), Gaps = 6/161 (3%)

Query: 485 MTRLILIMVWRKLIRNPNTYSSVLGLIWSLVSYRWHIKMPTIMSGSISILSDAGLGMAMF 544
            TRL+LI VW+KLI+ P  ++ +L +I SLV      KMP ++  SISILS A   MA+F
Sbjct: 167 STRLMLIFVWKKLIKFPPLWAPLLSVILSLVG----FKMPGLILKSISILSGATTPMALF 222

Query: 545 SLGLFMALQPKIIACGKSVATFAMAVRFLTGPAVIAATSIAIGLRGVLLHIAIVQAALPQ 604
           SLG  +AL P+ I  G   A  A+ VRFL  PAV+A  S  IGLRG+ L +AI+QAALP 
Sbjct: 223 SLG--LALSPRKIKLGVRDAILALIVRFLVQPAVMAGISKLIGLRGLELSVAILQAALPG 280

Query: 605 GIVPFVFAKEYNVHPDILSTAVIFGMLIALPITILYYVLLG 645
           G V  V A EY V  ++ STAV    +++L    L+ +LLG
Sbjct: 281 GAVAAVLATEYEVDVELASTAVTLSTVLSLISLPLFIILLG 321

[Transport and binding proteins, Other]. Length = 321
>gnl|CDD|217608 pfam03547, Mem_trans, Membrane transport protein Back     alignment and domain information
>gnl|CDD|233203 TIGR00946, 2a69, he Auxin Efflux Carrier (AEC) Family Back     alignment and domain information
>gnl|CDD|217608 pfam03547, Mem_trans, Membrane transport protein Back     alignment and domain information
>gnl|CDD|223751 COG0679, COG0679, Predicted permeases [General function prediction only] Back     alignment and domain information
>gnl|CDD|223751 COG0679, COG0679, Predicted permeases [General function prediction only] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 646
PF03547385 Mem_trans: Membrane transport protein; InterPro: I 100.0
TIGR00946321 2a69 he Auxin Efflux Carrier (AEC) Family. 100.0
PRK09903314 putative transporter YfdV; Provisional 100.0
COG0679311 Predicted permeases [General function prediction o 100.0
KOG2722408 consensus Predicted membrane protein [Function unk 99.73
TIGR00841 286 bass bile acid transporter. Functionally character 99.01
TIGR00832 328 acr3 arsenical-resistance protein. The first prote 98.66
COG0385 319 Predicted Na+-dependent transporter [General funct 98.59
PF01758187 SBF: Sodium Bile acid symporter family; InterPro: 98.48
PF13593 313 DUF4137: SBF-like CPA transporter family (DUF4137) 97.8
COG0798 342 ACR3 Arsenite efflux pump ACR3 and related permeas 97.0
TIGR00841286 bass bile acid transporter. Functionally character 96.02
PF04172215 LrgB: LrgB-like family ; InterPro: IPR007300 The t 95.88
PRK04288232 antiholin-like protein LrgB; Provisional 95.68
PRK10711231 hypothetical protein; Provisional 95.65
TIGR00659226 conserved hypothetical protein TIGR00659. Members 95.39
COG1346230 LrgB Putative effector of murein hydrolase [Cell e 95.02
PF03601 305 Cons_hypoth698: Conserved hypothetical protein 698 94.83
PF03812 314 KdgT: 2-keto-3-deoxygluconate permease; InterPro: 93.47
COG2855 334 Predicted membrane protein [Function unknown] 92.04
PRK03659 601 glutathione-regulated potassium-efflux system prot 91.97
PRK03562 621 glutathione-regulated potassium-efflux system prot 91.18
PF05684378 DUF819: Protein of unknown function (DUF819); Inte 90.32
TIGR00698 335 conserved hypothetical integral membrane protein. 89.12
TIGR00932 273 2a37 transporter, monovalent cation:proton antipor 87.93
PF13593313 DUF4137: SBF-like CPA transporter family (DUF4137) 86.77
PRK10669 558 putative cation:proton antiport protein; Provision 86.53
PRK12460312 2-keto-3-deoxygluconate permease; Provisional 84.89
TIGR00783347 ccs citrate carrier protein, CCS family. These pro 84.77
KOG2718 371 consensus Na+-bile acid cotransporter [Inorganic i 84.29
TIGR00844 810 c_cpa1 na(+)/h(+) antiporter. This model is specif 83.02
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea Back     alignment and domain information 
Probab=100.00  E-value=1.8e-44  Score=382.93  Aligned_cols=376  Identities=30%  Similarity=0.457  Sum_probs=298.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhccccChhhhhHHHHHHHHHHHHHHHHHHhhcCCccc-c-hhHHHHHH-HHHHHHHHHHH
Q 036474           10 VLAAIVPLYVAMILAYGSVRWWKIFTPDQCSGINRFVAVFAVPLLSFHFISLNDPYA-M-NYHFIAAD-SLQKVVILAAL   86 (646)
Q Consensus        10 IL~~ilPVFlLI~LGyla~R~~glfs~e~~~~LnrFV~~~ALPALLF~~lA~~~l~~-l-~~~filay-~l~~ll~f~l~   86 (646)
                      +++.++|+|+++++||+++| +|++++++.+.++++|+|+++||++|..+++.+..+ + ++.++..+ .+..++.+++.
T Consensus         2 v~~~i~~i~~ii~~G~~~~~-~~~l~~~~~~~ls~lv~~~~lP~liF~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (385)
T PF03547_consen    2 VFSAILPIFLIILLGYLLGR-FGILDPEASKGLSKLVFNVFLPALIFSSIANTDTLEDLLSLWFIPVFAFIIFILGLLLG   80 (385)
T ss_pred             cHHHHHHHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHH
Confidence            68899999999999999999 599999999999999999999999999999976444 3 44444333 33333444444


Q ss_pred             HHHHHHHhcCCcchhHHhhhh-cccCcccccHHHHHHHhhcCChhhHHHHHHHHHHHHHHHHHHHHHHhcccchhhhccC
Q 036474           87 FLWQAFTKHGNLEWMITLFSL-STLPNTLVMGIPLLKAMYGDDSGSLMVQVVVLQSVIWYTLMLFMFEYRGAKLLITEQF  165 (646)
Q Consensus        87 ~l~ar~~~~~~~~~~aal~al-asfsNtgfmGiPLl~aLfG~eal~~l~livvv~~lil~~l~lvLmE~~~a~~~~~~~~  165 (646)
                      +++.|+++ .+.++ ...+.+ ++|+|++++|+|++.++||+++..++.++.+++++++|+++..++|.++++....++.
T Consensus        81 ~~~~~~~~-~~~~~-~~~~~~~~~~~N~~~lglpi~~~l~g~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~~~~~~~~  158 (385)
T PF03547_consen   81 FLLSRLFR-LPKEW-RGVFVLAASFGNTGFLGLPILQALFGERGVAYAIIFDVVNNIILWSLGYFLLESRSEKEDKSEEE  158 (385)
T ss_pred             HHHHHhcC-CCccc-ceEEEecccCCcchhhHHHHHHHHhcchhhhhehHHHHhhHHHHHHHHHHhhccccccccccccc
Confidence            55555433 34443 345555 8999999999999999999999999999999999999999999999988776666666


Q ss_pred             CCccCcccceeecCcccccCCCCCcccccccCCCCceEEEEeecCCccccccccccCCCCccccCCCCCCCCCCcceecc
Q 036474          166 PETAGSITSFRVDSDVVSLNGREPLQTDAEIGDDGKLHVVVRRSSASSIVSSFNKSHGLNSLTSMTPRASNLTGVEIYSV  245 (646)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (646)
                      +++..+..+.+.|++..+.++.++..+|.++++|++.+...+++..+.  .+.                           
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~---------------------------  209 (385)
T PF03547_consen  159 PSSAESIDSEQEDSDEMSLDGSSPSSTEEEIDEDGSPSSTPSQSSASA--PSS---------------------------  209 (385)
T ss_pred             ccccccccccccCCccccCCcccccccccccccCCccccccccccccc--chh---------------------------
Confidence            666777889999999999999988899999998888776655444330  000                           


Q ss_pred             cCCCCCCCCCCCCCchhhhhhhhcCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCchhHHhhhccCCCCCCCCCCc
Q 036474          246 QSSREPTPRASSFNQNDFYAMFASKAPSPKHGYTNSFQGGIGDVYSLQSSKGATPRTSNFDEEMFKLGNKKRGGRSMSGE  325 (646)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (646)
                                                                        ...+|+.+                      
T Consensus       210 --------------------------------------------------~~~~~~~~----------------------  217 (385)
T PF03547_consen  210 --------------------------------------------------VSTSPSPS----------------------  217 (385)
T ss_pred             --------------------------------------------------hccCCccc----------------------
Confidence                                                              00000000                      


Q ss_pred             cccCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCcccceeeecCCCCCCCcccchhhccccccccc
Q 036474          326 LFNGGLVSSYPPPNPMFSGGTSAGARKKESAGGGGSGGGAAPAGVPNNKELHMFVWSSTASPVSEGNLRHAVNRAASADF  405 (646)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  405 (646)
                                                                                      .         .     
T Consensus       218 ----------------------------------------------------------------~---------~-----  219 (385)
T PF03547_consen  218 ----------------------------------------------------------------N---------S-----  219 (385)
T ss_pred             ----------------------------------------------------------------c---------c-----
Confidence                                                                            0         0     


Q ss_pred             cCCCCcchhhhhhhhHhhHHHHHhhhccCCCccccCccccccccCCCCCCCCCCccccchhhhhhchhhhccCCCchhhh
Q 036474          406 AGVDSSNKAALYHENAASKAMHELIENMSPASKVNGERNLEIEDGSKFPSSGSPYSCQKKMVMEEGDAAKKHQMPPASVM  485 (646)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  485 (646)
                                 +     .     .+.                                +                 +.-+
T Consensus       220 -----------~-----~-----~~~--------------------------------~-----------------~~~~  229 (385)
T PF03547_consen  220 -----------T-----G-----AEQ--------------------------------K-----------------SSNS  229 (385)
T ss_pred             -----------c-----h-----hhh--------------------------------h-----------------hhhh
Confidence                       0     0     000                                0                 0002


Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCCCCCC----HHHHHHHHHHHHhHHHHHHHHHhhhccccchhhhcch
Q 036474          486 TRLILIMVWRKLIRNPNTYSSVLGLIWSLVSYRWHIKMP----TIMSGSISILSDAGLGMAMFSLGLFMALQPKIIACGK  561 (646)
Q Consensus       486 ~~~il~~vlkkllkNP~IiAiilGLilsll~~r~gI~LP----~~L~~tL~~Lg~aa~PLALf~LG~sLa~~~~~~~~~~  561 (646)
                      .+..+++.+++.++||+++++++|++++++    ++..|    .++.++++++|++++|++||++|+.|+..++.....+
T Consensus       230 ~~~~~~~~~~~~~~nP~~~a~~lgli~~~~----~~~~~~~~~~~i~~~~~~lg~~~~pl~l~~lG~~l~~~~~~~~~~~  305 (385)
T PF03547_consen  230 TRKKLKKSILKLFKNPPLIAIILGLIIGLI----PPLRPLFFPSFITDSLSYLGAAAVPLALFVLGASLARGPRKSALGW  305 (385)
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHHH----HHhcccchHhHHHHHHHHHHhhhHHHHHHHHHHHHhcCCcccchhh
Confidence            344567788889999999999999999999    55555    9999999999999999999999999998643334566


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHhccchhhHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHH
Q 036474          562 SVATFAMAVRFLTGPAVIAATSIAIGLRGVLLHIAIVQAALPQGIVPFVFAKEYNVHPDILSTAVIFGMLIALPITILYY  641 (646)
Q Consensus       562 k~v~~~vliKLIv~PLLa~ll~~l~gL~~~~~~vlVL~AAmP~Av~~~V~A~~Yg~d~elASsaVllSTLLSLpl~i~l~  641 (646)
                      +.....+++|++++|++++++++++++++....++++++++|+|++.+++|++||.+++.++++++++|+++++++++|+
T Consensus       306 ~~~~~~~~~rlii~P~i~~~~~~~~~l~~~~~~~~~~~~~~P~a~~~~~~a~~~~~~~~~~s~~~~~~~~~~~~~~~~~~  385 (385)
T PF03547_consen  306 KPSIIAVLVRLIILPLIGIGIVFLLGLDGDMARVLILQAAMPTAINSFVIASLYGLDEEEASSIVFWSTLLSIPTLPLWI  385 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHhccCCchHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHC
Confidence            66677899999999999999999999999999999999999999999999999999999999999999999988888774

Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family Back     alignment and domain information
>PRK09903 putative transporter YfdV; Provisional Back     alignment and domain information
>COG0679 Predicted permeases [General function prediction only] Back     alignment and domain information
>KOG2722 consensus Predicted membrane protein [Function unknown] Back     alignment and domain information
>TIGR00841 bass bile acid transporter Back     alignment and domain information
>TIGR00832 acr3 arsenical-resistance protein Back     alignment and domain information
>COG0385 Predicted Na+-dependent transporter [General function prediction only] Back     alignment and domain information
>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes Back     alignment and domain information
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137) Back     alignment and domain information
>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR00841 bass bile acid transporter Back     alignment and domain information
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [] Back     alignment and domain information
>PRK04288 antiholin-like protein LrgB; Provisional Back     alignment and domain information
>PRK10711 hypothetical protein; Provisional Back     alignment and domain information
>TIGR00659 conserved hypothetical protein TIGR00659 Back     alignment and domain information
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins Back     alignment and domain information
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi Back     alignment and domain information
>COG2855 Predicted membrane protein [Function unknown] Back     alignment and domain information
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional Back     alignment and domain information
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional Back     alignment and domain information
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species Back     alignment and domain information
>TIGR00698 conserved hypothetical integral membrane protein Back     alignment and domain information
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family Back     alignment and domain information
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137) Back     alignment and domain information
>PRK10669 putative cation:proton antiport protein; Provisional Back     alignment and domain information
>PRK12460 2-keto-3-deoxygluconate permease; Provisional Back     alignment and domain information
>TIGR00783 ccs citrate carrier protein, CCS family Back     alignment and domain information
>KOG2718 consensus Na+-bile acid cotransporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR00844 c_cpa1 na(+)/h(+) antiporter Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query646
3zux_A 332 Transporter, ASBTNM; transport protein, membrane p 99.14
3zux_A332 Transporter, ASBTNM; transport protein, membrane p 94.39
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A* Back     alignment and structure
Probab=99.14  E-value=7.3e-10  Score=116.66  Aligned_cols=145  Identities=16%  Similarity=0.120  Sum_probs=118.3

Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhHHHHHHHHHhhhccccch-hhhcchhHHHHHH
Q 036474          490 LIMVWRKLIRNPNTYSSVLGLIWSLVSYRWHIKMPTIMSGSISILSDAGLGMAMFSLGLFMALQPK-IIACGKSVATFAM  568 (646)
Q Consensus       490 l~~vlkkllkNP~IiAiilGLilsll~~r~gI~LP~~L~~tL~~Lg~aa~PLALf~LG~sLa~~~~-~~~~~~k~v~~~v  568 (646)
                      ++++. +.+.++..+.+++++++.++       .|+... .++..-..+.++.||.+|+.+....- ...++++......
T Consensus         9 l~~~~-~~l~~~~~l~i~~~~~lg~~-------~P~~~~-~~~~~i~~~l~~~mf~~G~~l~~~~l~~~~~~~~~~~~~l   79 (332)
T 3zux_A            9 LSKIS-SFIGKTFSLWAALFAAAAFF-------APDTFK-WAGPYIPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGV   79 (332)
T ss_dssp             HHHHH-HHHHHTHHHHHHHHHHHHHH-------CGGGTG-GGGGGHHHHHHHHHHHHHHHCCGGGGHHHHHSHHHHHHHH
T ss_pred             HHHHH-HHHHHHHHHHHHHHHHHHHH-------cchhhh-hhHHHHHHHHHHHHHHHHhCCCHHHHHHHHhCcHHHHHHH
Confidence            34443 45688999999999999888       554322 23344456889999999999998641 1124667778889


Q ss_pred             HHHHHHHHHHHHHHHHHhCCChHHHHHHHHHhccchhhHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 036474          569 AVRFLTGPAVIAATSIAIGLRGVLLHIAIVQAALPQGIVPFVFAKEYNVHPDILSTAVIFGMLIALPITILYYVL  643 (646)
Q Consensus       569 liKLIv~PLLa~ll~~l~gL~~~~~~vlVL~AAmP~Av~~~V~A~~Yg~d~elASsaVllSTLLSLpl~i~l~~L  643 (646)
                      +++++++|++++++..++++++.....+++.+++|+++.+.+++..+|.|.+.+...+.++|++++.+++++..+
T Consensus        80 ~~~~vi~Pll~~~l~~~~~l~~~~~~Glil~~~~P~~~~s~v~t~~a~Gd~~la~~~~~~stll~~~~~Pl~~~l  154 (332)
T 3zux_A           80 IAQFAIMPATAWCLSKLLNLPAEIAVGVILVGCCPGGTASNVMTYLARGNVALSVAVTSVSTLTSPLLTPAIFLM  154 (332)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHSCCCTHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCChHHHHHHHHHhcCCchhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999996666655444
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00